Citrus Sinensis ID: 003465
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 818 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZG8 | 1045 | Probable LRR receptor-lik | yes | no | 0.715 | 0.559 | 0.335 | 1e-83 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.588 | 0.429 | 0.390 | 5e-75 | |
| C0LGV1 | 1135 | LRR receptor-like serine/ | no | no | 0.601 | 0.433 | 0.366 | 9e-75 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.528 | 0.378 | 0.397 | 3e-71 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.520 | 0.386 | 0.395 | 3e-70 | |
| O82318 | 960 | Probably inactive leucine | no | no | 0.597 | 0.509 | 0.358 | 3e-70 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.710 | 0.601 | 0.344 | 5e-70 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.531 | 0.347 | 0.392 | 7e-70 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.583 | 0.488 | 0.369 | 8e-69 | |
| O65440 | 992 | Leucine-rich repeat recep | no | no | 0.599 | 0.493 | 0.374 | 8e-69 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 311 bits (798), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 235/700 (33%), Positives = 343/700 (49%), Gaps = 115/700 (16%)
Query: 59 NHSDHC-KWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNI 117
N S C W G+ C+L GSIIR++L+ GI G + F FS PNL + + SG I
Sbjct: 77 NTSSFCTSWYGVACSL-GSIIRLNLTNT-GIEGTFEDFPFSSLPNLTFVDLSMNRFSGTI 134
Query: 118 PSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177
G SKL+ DLS N L G IP +LG+L+NL L+L + LNG IPS +G LT+++
Sbjct: 135 SPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTE 194
Query: 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI 237
+ + N L GPIP + G+LT+L L LF N ++G IP + GNL +L+E+ L N L G I
Sbjct: 195 IAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKI 254
Query: 238 ASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS- 296
S+ G+L N+ L++ QLSG +P EIG + L LSL+ N LTGPIPSTLG + +L+
Sbjct: 255 PSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAV 314
Query: 297 -----------------------DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSI 333
DL++S N L GP+P + LT L L L NQ++G I
Sbjct: 315 LHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPI 374
Query: 334 PLGIGNLE------------------------NLERVDMSSNKLEGPIPLTIGDLTNLIY 369
P GI N LE + + N EGP+P ++ D +LI
Sbjct: 375 PPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIR 434
Query: 370 LDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRI 429
+ N SG I FG L F++L++N +G + + L + ILSNNS+TG I
Sbjct: 435 VRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAI 494
Query: 430 PSEIRNLSYLHELDLSLNFISGMTPPQ---------------HFKQKHSIRDRLLT---Y 471
P EI N++ L +LDLS N I+G P K RLLT Y
Sbjct: 495 PPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEY 554
Query: 472 VNHQFNRLSGQIPMTIG---------------------GLSKLS-------------GSV 497
++ NR S +IP T+ GL+KLS G +
Sbjct: 555 LDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEI 614
Query: 498 PSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE---FINRIMP 554
S+ + L + LS+N+L G IP ++ L ++D+S+NN+ G +P+ F N
Sbjct: 615 SSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPD 674
Query: 555 A-----DLVPMINFSISPTPSPASPQQEPNKVMILLISIIFPIAAFVAFLA--HGTLFLL 607
A DL +N + P + ++ +K L+I I+ PI + L+ G
Sbjct: 675 AFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVCAGIFICF 734
Query: 608 RRKNKRAELTSGEIKSQDRDAFSIWNCDGRIAFEEIIRAT 647
R++ K+ E + + SI++ DG++ ++EII+AT
Sbjct: 735 RKRTKQIEEHTD--SESGGETLSIFSFDGKVRYQEIIKAT 772
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 195/499 (39%), Positives = 271/499 (54%), Gaps = 18/499 (3%)
Query: 58 SNHSDHC-KWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGN 116
+N S C W G+ CN GSI ++L+ GI G F F NL + + +SG
Sbjct: 59 TNTSFSCTSWYGVSCNSRGSIEELNLTNT-GIEGTFQDFPFISLSNLAYVDLSMNLLSGT 117
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
IP + G LSKL DLS N+LTG I LGNL NL LYL ++ L IPS LG++ ++
Sbjct: 118 IPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMT 177
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
L LS N L G IP +LG+L L L L+ N + G IP + GN+ + ++ LS NKL G
Sbjct: 178 DLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGS 237
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
I ST+G+L NL L L L+G +P EIG +E++ L+L+ N LTG IPS+LG L +L+
Sbjct: 238 IPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLT 297
Query: 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGP 356
L L N L G IPP L ++ + L+L +N++ GSIP +GNL+NL + + N L G
Sbjct: 298 LLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGV 357
Query: 357 IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416
IP +G++ ++I L L+ N+L+G IPS+FG+L L +L L N L G IP EL N S+
Sbjct: 358 IPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMI 417
Query: 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQF 476
+L LS N LTG +P N + L L L +N +SG PP H LT +
Sbjct: 418 NLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSH------LTTLILDT 471
Query: 477 NRLSGQIPMTIGGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMG 526
N +G P T+ K L G +P + +C L+ N G I G
Sbjct: 472 NNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFG 531
Query: 527 KIIFLEYLDLSYNNIPGTV 545
L ++D S+N G +
Sbjct: 532 IYPDLNFIDFSHNKFHGEI 550
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (721), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 189/515 (36%), Positives = 284/515 (55%), Gaps = 23/515 (4%)
Query: 50 WNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIW 109
WN S SD C+W I C+ + + + ++ V+ N S F +L+ I
Sbjct: 61 WNPS------DSDPCQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVIS 114
Query: 110 YSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTL 169
+N++G I SEIG S+L ++DLS N+L G IPS LG L NL EL L+ + L G IP L
Sbjct: 115 NTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPEL 174
Query: 170 GHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN-QINGCIPLDFGNLRHLKEVDL 228
G L L++ N L +P LG ++ L +++ N +++G IP + GN R+LK + L
Sbjct: 175 GDCVSLKNLEIFDNYLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGL 234
Query: 229 SGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPST 288
+ K++G + ++G L+ L SL + S LSG +P+E+G L+ L L N+L+G +P
Sbjct: 235 AATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKE 294
Query: 289 LGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDM 348
LG+L +L + L N+L GPIP + + L + L N +G+IP GNL NL+ + +
Sbjct: 295 LGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELML 354
Query: 349 SSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE 408
SSN + G IP + + T L+ + NQ+SG IP G L L NKL G+IP E
Sbjct: 355 SSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDE 414
Query: 409 LMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRL 468
L C +LQ+L LS N LTG +P+ + L L +L L N ISG+ P + +R RL
Sbjct: 415 LAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRL 474
Query: 469 LTYVNHQFNRLSGQIPMTIGGL----------SKLSGSVPSEIGNCSGLLNVTLSNNSLD 518
+ NR++G+IP IG L + LSG VP EI NC L + LSNN+L
Sbjct: 475 VN------NRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQ 528
Query: 519 GTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIM 553
G +PL + + L+ LD+S N++ G +P+ + ++
Sbjct: 529 GYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLI 563
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (690), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 188/473 (39%), Positives = 253/473 (53%), Gaps = 41/473 (8%)
Query: 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175
++P + A LQ L +S NLTGT+P LG+ L L LS + L G IP +L L L
Sbjct: 96 SLPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNL 155
Query: 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNK-LN 234
L L+SN L G IP + ++L +L LF N + G IP + G L L+ + + GNK ++
Sbjct: 156 ETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEIS 215
Query: 235 GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTS 294
G I S IGD +NL L L+ +SG LP +G L+ L LS+ ++G IPS LG +
Sbjct: 216 GQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSE 275
Query: 295 LSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDM------ 348
L DL L NSL G IP + LT+L L L+ N + G IP IGN NL+ +D+
Sbjct: 276 LVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLS 335
Query: 349 ------------------SSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL 390
S NK G IP TI + ++L+ L L NQ+SG IPS G LT
Sbjct: 336 GSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTK 395
Query: 391 LKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450
L SN+L GSIP L +C LQ+L LS NSLTG IPS + L L +L L N +S
Sbjct: 396 LTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLS 455
Query: 451 GMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSK----------LSGSVPSE 500
G P + +R RL FNR++G+IP IG L K L G VP E
Sbjct: 456 GFIPQEIGNCSSLVRLRL------GFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDE 509
Query: 501 IGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIM 553
IG+CS L + LSNNSL+G++P + + L+ LD+S N G +P + R++
Sbjct: 510 IGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLV 562
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 175/442 (39%), Positives = 241/442 (54%), Gaps = 16/442 (3%)
Query: 115 GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTR 174
G+IP +IG LS LQ L + NNLTG IP + L L + R+ +G IPS +
Sbjct: 153 GSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCES 212
Query: 175 LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
L +L L+ N L G +P L L LT L L+ N+++G IP GN+ L+ + L N
Sbjct: 213 LKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFT 272
Query: 235 GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTS 294
G I IG LT + L L + QL+G +P+EIG L + + + N LTG IP G + +
Sbjct: 273 GSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILN 332
Query: 295 LSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354
L L L N L GPIP L LT L L L N++NG+IP + L L + + N+LE
Sbjct: 333 LKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLE 392
Query: 355 GPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFS 414
G IP IG +N LD+S N LSGPIP+ F L L+L SNKL+G+IP +L C S
Sbjct: 393 GKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKS 452
Query: 415 LQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNH 474
L L+L +N LTG +P E+ NL L L+L N++SG K K+ R RL
Sbjct: 453 LTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLAN---- 508
Query: 475 QFNRLSGQIPMTIGGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE 524
N +G+IP IG L+K L+G +P E+G+C + + LS N G I E
Sbjct: 509 --NNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQE 566
Query: 525 MGKIIFLEYLDLSYNNIPGTVP 546
+G++++LE L LS N + G +P
Sbjct: 567 LGQLVYLEILRLSDNRLTGEIP 588
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 188/525 (35%), Positives = 280/525 (53%), Gaps = 36/525 (6%)
Query: 58 SNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNI 117
S+ +D C W+G+VCN ++ + LSG N L F P L++ + +N+SG I
Sbjct: 55 SSTNDVCLWSGVVCNNISRVVSLDLSGKNMSGQILTAATFR-LPFLQTINLSNNNLSGPI 113
Query: 118 PSEIGALSK--LQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175
P +I S L+ L+LS+NN +G+IP G L NL L LS + G I + +G + L
Sbjct: 114 PHDIFTTSSPSLRYLNLSNNNFSGSIPR--GFLPNLYTLDLSNNMFTGEIYNDIGVFSNL 171
Query: 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG 235
+LDL N L G +P LG+L++L L L SNQ+ G +P++ G +++LK + L N L+G
Sbjct: 172 RVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSG 231
Query: 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSL 295
I IG L++LN LDL LSGP+P +G L+ L Y+ L N L+G IP ++ L +L
Sbjct: 232 EIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNL 291
Query: 296 SDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG 355
LD S NSL G IP ++ + L L LFSN + G IP G+ +L L+ + + SN+ G
Sbjct: 292 ISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSG 351
Query: 356 PIPLTIGDLTNLIYLDLSLNQLSGPIPSTF---GHLTLLKFLNLNSNKLNGSIPSELMNC 412
IP +G NL LDLS N L+G +P T GHLT L SN L+ IP L C
Sbjct: 352 GIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILF---SNSLDSQIPPSLGMC 408
Query: 413 FSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSI-------- 464
SL+ + L NN +G++P L ++ LDLS N + G Q +
Sbjct: 409 QSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLSNNNLQGNINTWDMPQLEMLDLSVNKFF 468
Query: 465 -------RDRLLTYVNHQFNRLSGQIP---MTIGGL-------SKLSGSVPSEIGNCSGL 507
R + L ++ N++SG +P MT + ++++G +P E+ +C L
Sbjct: 469 GELPDFSRSKRLKKLDLSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNL 528
Query: 508 LNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRI 552
+N+ LS+N+ G IP + L LDLS N + G +P+ + I
Sbjct: 529 VNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNI 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 209/606 (34%), Positives = 306/606 (50%), Gaps = 25/606 (4%)
Query: 59 NHSDHCKWAGIVC-NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNI 117
++SD C W G+ C N++ S++ ++LS +N + G++ NL+S + + ++G I
Sbjct: 54 HNSDLCSWRGVFCDNVSYSVVSLNLSSLN-LGGEISP-AIGDLRNLQSIDLQGNKLAGQI 111
Query: 118 PSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177
P EIG + L LDLS N L G IP + L L L L + L GP+P+TL + L
Sbjct: 112 PDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKR 171
Query: 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI 237
LDL+ N L G I L L L L N + G + D L L D+ GN L G I
Sbjct: 172 LDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTI 231
Query: 238 ASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSD 297
+IG+ T+ LD+S Q++G +P IG+L+ + LSL N LTG IP +G + +L+
Sbjct: 232 PESIGNCTSFQILDISYNQITGEIPYNIGFLQ-VATLSLQGNRLTGRIPEVIGLMQALAV 290
Query: 298 LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357
LDLS N L GPIPP L +L+ L L N + G IP +GN+ L + ++ NKL G I
Sbjct: 291 LDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTI 350
Query: 358 PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQS 417
P +G L L L+L+ N+L GPIPS L N++ N L+GSIP N SL
Sbjct: 351 PPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTY 410
Query: 418 LILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFN 477
L LS+N+ G+IP E+ ++ L +LDLS N SG P +H L +N N
Sbjct: 411 LNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSGSIPLTLGDLEH------LLILNLSRN 464
Query: 478 RLSGQIPMTIGGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGK 527
LSGQ+P G L LSG +P+E+G L ++ L+NN L G IP ++
Sbjct: 465 HLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTN 524
Query: 528 IIFLEYLDLSYNNIPGTVPEFIN--RIMPADLVPMINFSISPTPSPASPQQEPNKVMILL 585
L L++S+NN+ G VP N R PA V + S P P +
Sbjct: 525 CFTLVNLNVSFNNLSGIVPPMKNFSRFAPASFVGNPYLCGNWVGSICGPL--PKSRVFSR 582
Query: 586 ISIIFPIAAFVAFLAHGTLFLLRRKNKRAELTSGEIKSQDRDAFSIWNCDGRI-AFEEII 644
++I + + L L + + ++ L +++ I + D I F++I+
Sbjct: 583 GALICIVLGVITLLCMIFLAVYKSMQQKKILQGSSKQAEGLTKLVILHMDMAIHTFDDIM 642
Query: 645 RATEDL 650
R TE+L
Sbjct: 643 RVTENL 648
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 266 bits (679), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 178/453 (39%), Positives = 259/453 (57%), Gaps = 18/453 (3%)
Query: 111 SNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLG 170
+ +SG IP+EI L++LDLS+N LTG IP L L L LYL+ ++L G + S++
Sbjct: 347 TQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSIS 406
Query: 171 HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSG 230
+LT L L N+L G +P +G L +L + L+ N+ +G +P++ GN L+E+D G
Sbjct: 407 NLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYG 466
Query: 231 NKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLG 290
N+L+G I S+IG L +L L L +L G +P +G + + L N L+G IPS+ G
Sbjct: 467 NRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFG 526
Query: 291 RLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSS 350
LT+L + +NSL G +P +L +L LT + SN+ NGSI G+ L D++
Sbjct: 527 FLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLS-FDVTE 585
Query: 351 NKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELM 410
N EG IPL +G TNL L L NQ +G IP TFG ++ L L+++ N L+G IP EL
Sbjct: 586 NGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELG 645
Query: 411 NCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLT 470
C L + L+NN L+G IP+ + L L EL LS N G P + F S+ + L
Sbjct: 646 LCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIF----SLTNILTL 701
Query: 471 YVNHQFNRLSGQIPMTIGGL----------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGT 520
+++ N L+G IP IG L ++LSG +PS IG S L + LS N+L G
Sbjct: 702 FLDG--NSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGE 759
Query: 521 IPLEMGKIIFLE-YLDLSYNNIPGTVPEFINRI 552
IP+E+G++ L+ LDLSYNN G +P I+ +
Sbjct: 760 IPVEIGQLQDLQSALDLSYNNFTGRIPSTISTL 792
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (669), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 184/498 (36%), Positives = 271/498 (54%), Gaps = 21/498 (4%)
Query: 61 SDHCKWAGIVC-NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPS 119
SD+C W G+ C N+ +++ ++LS +N + G++ +L S + + +SG IP
Sbjct: 53 SDYCVWRGVSCENVTFNVVALNLSDLN-LDGEISPA-IGDLKSLLSIDLRGNRLSGQIPD 110
Query: 120 EIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILD 179
EIG S LQ LDLS N L+G IP + L L +L L + L GPIPSTL + L ILD
Sbjct: 111 EIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILD 170
Query: 180 LSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIAS 239
L+ N L G IP + L L L N + G I D L L D+ N L G I
Sbjct: 171 LAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPE 230
Query: 240 TIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLD 299
TIG+ T LDLS QL+G +P +IG+L+ + LSL N L+G IPS +G + +L+ LD
Sbjct: 231 TIGNCTAFQVLDLSYNQLTGEIPFDIGFLQ-VATLSLQGNQLSGKIPSVIGLMQALAVLD 289
Query: 300 LSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPL 359
LS N L G IPP L +LT L L SN++ GSIP +GN+ L ++++ N L G IP
Sbjct: 290 LSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPP 349
Query: 360 TIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLI 419
+G LT+L L+++ N L GPIP T L LN++ NK +G+IP S+ L
Sbjct: 350 ELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLN 409
Query: 420 LSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRL 479
LS+N++ G IP E+ + L LDLS N I+G+ P +H ++ +N N +
Sbjct: 410 LSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLK------MNLSRNHI 463
Query: 480 SGQIPMTIGGL----------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKII 529
+G +P G L + +SG +P E+ ++ + L NN+L G + + +
Sbjct: 464 TGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNVG-SLANCL 522
Query: 530 FLEYLDLSYNNIPGTVPE 547
L L++S+NN+ G +P+
Sbjct: 523 SLTVLNVSHNNLVGDIPK 540
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 262 bits (669), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 190/507 (37%), Positives = 267/507 (52%), Gaps = 17/507 (3%)
Query: 59 NHSDHCKWAGIVC-NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNI 117
N + C W G+ C NLN SI R+ LS +N I G + P+L I ++ SG +
Sbjct: 59 NFNSLCSWTGVSCDNLNQSITRLDLSNLN-ISGTISPEISRLSPSLVFLDISSNSFSGEL 117
Query: 118 PSEIGALSKLQILDLSHNNLTGTIPSK-LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
P EI LS L++L++S N G + ++ + LV L ++ NG +P +L LTRL
Sbjct: 118 PKEIYELSGLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLE 177
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSG-NKLNG 235
LDL N G IP + G L L L N + G IP + N+ L ++ L N G
Sbjct: 178 HLDLGGNYFDGEIPRSYGSFLSLKFLSLSGNDLRGRIPNELANITTLVQLYLGYYNDYRG 237
Query: 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSL 295
I + G L NL LDL++ L G +P E+G L+NL L L N LTG +P LG +TSL
Sbjct: 238 GIPADFGRLINLVHLDLANCSLKGSIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSL 297
Query: 296 SDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG 355
LDLS+N L G IP LS L +L LF N+++G IP + L +L+ + + N G
Sbjct: 298 KTLDLSNNFLEGEIPLELSGLQKLQLFNLFFNRLHGEIPEFVSELPDLQILKLWHNNFTG 357
Query: 356 PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSL 415
IP +G NLI +DLS N+L+G IP + LK L L +N L G +P +L C L
Sbjct: 358 KIPSKLGSNGNLIEIDLSTNKLTGLIPESLCFGRRLKILILFNNFLFGPLPEDLGQCEPL 417
Query: 416 QSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQ 475
L N LT ++P + L L L+L NF++G P + + + + LT +N
Sbjct: 418 WRFRLGQNFLTSKLPKGLIYLPNLSLLELQNNFLTGEIPEE---EAGNAQFSSLTQINLS 474
Query: 476 FNRLSGQIPMTIG----------GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEM 525
NRLSG IP +I G ++LSG +P EIG+ LL + +S N+ G P E
Sbjct: 475 NNRLSGPIPGSIRNLRSLQILLLGANRLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEF 534
Query: 526 GKIIFLEYLDLSYNNIPGTVPEFINRI 552
G + L YLDLS+N I G +P I++I
Sbjct: 535 GDCMSLTYLDLSHNQISGQIPVQISQI 561
|
Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 818 | ||||||
| 224065665 | 847 | predicted protein [Populus trichocarpa] | 0.898 | 0.867 | 0.357 | 1e-105 | |
| 359484066 | 843 | PREDICTED: probable LRR receptor-like se | 0.869 | 0.843 | 0.326 | 4e-99 | |
| 359491512 | 1078 | PREDICTED: probable LRR receptor-like se | 0.915 | 0.694 | 0.319 | 2e-98 | |
| 225456161 | 1037 | PREDICTED: probable LRR receptor-like se | 0.908 | 0.716 | 0.310 | 2e-98 | |
| 224110020 | 1048 | predicted protein [Populus trichocarpa] | 0.830 | 0.647 | 0.369 | 4e-98 | |
| 296085303 | 789 | unnamed protein product [Vitis vinifera] | 0.852 | 0.883 | 0.327 | 2e-97 | |
| 224110038 | 964 | predicted protein [Populus trichocarpa] | 0.816 | 0.692 | 0.379 | 1e-95 | |
| 357451683 | 1029 | Receptor protein kinase-like protein [Me | 0.788 | 0.626 | 0.358 | 2e-95 | |
| 224065673 | 964 | predicted protein [Populus trichocarpa] | 0.808 | 0.685 | 0.380 | 6e-94 | |
| 359484063 | 1003 | PREDICTED: probable LRR receptor-like se | 0.773 | 0.631 | 0.367 | 4e-91 |
| >gi|224065665|ref|XP_002301910.1| predicted protein [Populus trichocarpa] gi|222843636|gb|EEE81183.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 306/855 (35%), Positives = 425/855 (49%), Gaps = 120/855 (14%)
Query: 10 VLFIWATVFICQVDVITDTFVTASIVPIRLEREALLNTGWWNNSREKASNHSDHCKWAGI 69
+F+ T + +D D+ + AS E +ALL +GWW++ R S+ CKW GI
Sbjct: 22 CIFVSCTGLVAALD---DSALLAS------EGKALLESGWWSDYRNLTSHR---CKWTGI 69
Query: 70 VCNLNGSIIRISLS-GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQ 128
VC+ GSI IS + K + NFSCF NL + +SG+IP +I L +L+
Sbjct: 70 VCDRAGSITDISPPPEFLKVGNKFGKMNFSCFSNLARLHLANHELSGSIPPQISILPQLR 129
Query: 129 ILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGP 188
L+LS NNL G +PS LGNL+ LVEL S +N IP LG+L L ILD S+N L GP
Sbjct: 130 YLNLSSNNLAGELPSSLGNLSRLVELDFSSNNFINSIPPELGNLKNLEILDASNNRLNGP 189
Query: 189 IPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN 248
IP T+G L +L +L L N ING IPL+ GNL +LK++ L N L G I STIG L++L
Sbjct: 190 IPRTMGSLAKLRSLILSRNAINGFIPLEIGNLTNLKDLQLISNILVGSIPSTIGFLSDLT 249
Query: 249 SLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIP---------------------- 286
+LDLS ++G +P +IG L NL +L L+ N L G IP
Sbjct: 250 NLDLSFNGINGSIPLQIGNLTNLEHLDLSSNILAGSIPSIFSLLSNLILLHLFDNQINGS 309
Query: 287 --STLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLE 344
S +G LT+L L L N + G IP +L +L LT L L +NQI GSI L I NL NLE
Sbjct: 310 ISSEIGNLTNLCRLFLRGNKITGSIPISLGNLRNLTFLDLSNNQIIGSIALKIRNLTNLE 369
Query: 345 RVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGS 404
+ +SSN + G +P +G L NL LDL NQ++G IP +LT L+ L LNSN +GS
Sbjct: 370 ELHLSSNNISGSVPTILGSLLNLKKLDLCRNQINGSIPLEIQNLTNLEELCLNSNNFSGS 429
Query: 405 IPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSI 464
IP L + +L+ L LS N + G I S ++N YL LDLS + +SG P Q +
Sbjct: 430 IPFMLGSLTNLKKLDLSRNQINGSIASSLKNCKYLTYLDLSHSNLSGQIPSQLYNLPS-- 487
Query: 465 RDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIG-NCSGLLNVTLSNNSLDGTIPL 523
L+YVN +N LSG +P+ + P ++ C L ++ +
Sbjct: 488 ----LSYVNFGYNNLSGSVPLQL--------PQPFDVSFTCDSLHGQRTNSPEIFQATAF 535
Query: 524 EMGKIIF-----LEYLDLSYNNIPGTVPEFINRIMPA-DLVPMINFSISPTPSPASPQQE 577
E K + E DL Y G +P+ LV + PA +
Sbjct: 536 EGNKDLHPDFSPTENFDLRYCIGSGGYGSVYRAQLPSGKLVALKKLHHREAEEPAFDKSF 595
Query: 578 PNKVMILLISIIFPIAAFVAFLAHG-TLFLLRRKNKRAELTSGEIKSQDRDAFSIWNCDG 636
N+V +L I F H +FL+ ++ L ++ N G
Sbjct: 596 KNEVELLTQIRHRSIVRLYGFCLHQRCMFLVYEYMEKGSLFC-----------ALRNDVG 644
Query: 637 RIAFEEIIRATEDLISDIALELDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEAHVFNN 696
+ + + RA +I DIA L ++ H C + S N
Sbjct: 645 AVELKWMKRA--HIIKDIAHAL----SYLHHECNPPIVHRDISSS--------------N 684
Query: 697 ILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP--------------------- 735
+LLNS ++F +FGVARLL+ DSSN T++AGTY YIAP
Sbjct: 685 VLLNSVSKSFVADFGVARLLDPDSSNHTVLAGTYGYIAPELAYTMVVTEKCDVYSFGAVA 744
Query: 736 -----AKHPQEILSLFSSTSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSK 790
+HP +IL S+S ITL +LD R+SPP + ++Q+I + + +A +CL S
Sbjct: 745 LETLMGRHPGDIL----SSSARAITLKEVLDPRLSPPTDEIVIQNICIIATLAFSCLHSN 800
Query: 791 PKSVPTMQRVSQEFL 805
PKS P+M+ VSQEFL
Sbjct: 801 PKSRPSMKFVSQEFL 815
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484066|ref|XP_002271307.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 369 bits (947), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 274/838 (32%), Positives = 406/838 (48%), Gaps = 127/838 (15%)
Query: 44 LLNTGWWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNL 103
L N+ WW E ++H HC W GI CN G ++RI+ S ++G +L + FS FP+L
Sbjct: 46 LRNSTWWW-YMENTTSH--HCTWEGITCNTEGHVVRITYSYIDGKMVELSKLKFSSFPSL 102
Query: 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNG 163
L++SH+++ G IP ++G L L L +S +++G
Sbjct: 103 LH------------------------LNVSHSSIYGRIPDEIGMLTKLTYLRISECDVHG 138
Query: 164 PIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL-FSNQINGCIPLDFGNLRH 222
+P +LG+LT L LDL+ N+L G IP +LG+L L L L F+ ++G IP G L++
Sbjct: 139 ELPVSLGNLTLLEELDLAYNNLSGVIPSSLGYLKNLIHLDLSFNYGLSGVIPSSLGYLKN 198
Query: 223 LKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282
LK +DLS N++NG I IG+L NL L L S LSG +P + L NL YL LN N +
Sbjct: 199 LKYLDLSINEINGSIPYQIGNLKNLTHLYLVSNSLSGVIPSSLANLSNLEYLFLNFNRIN 258
Query: 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLEN 342
G IPS +G L +L L SHNSL G IPP+L HLT LT L LF+NQI G IPL G+L
Sbjct: 259 GSIPSEIGNLKNLVQLCFSHNSLIGTIPPSLGHLTNLTYLHLFNNQIQGGIPLSFGHLTK 318
Query: 343 LERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN 402
L +++ N++ G IP I +L NLI+L L N L+G IPS+ G+L L N++ N++N
Sbjct: 319 LTDLNLCDNQINGSIPPIIWNLKNLIHLRLDHNNLTGVIPSSLGYLIHLNEFNISGNRIN 378
Query: 403 GSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKH 462
G IPS + N +L L LS N + G+IPS+++NL L L+LS N +SG P
Sbjct: 379 GHIPSTIGNLNNLTRLDLSANLIHGKIPSQVQNLKRLTYLNLSHNKLSGSIPTL------ 432
Query: 463 SIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLS-GSVPSEIGNCSGLLNVTLSNNSLDGT- 520
I D + ++ N L G IP + SK S GS + G C + + T
Sbjct: 433 LIYDHIKPSLDLSHNDLEGHIPFELQ--SKFSQGSFDNNKGLCGDIKGLPHCKEEYKTTR 490
Query: 521 -IPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMP---ADLVPMINFSISPTPSPASPQQ 576
I + + +FL ++ L + + + + +P D+ + N+
Sbjct: 491 IIVISLSTTLFLFFVVLGFLLLSRKTRKIQTKEIPTKNGDIFSVWNYDGKIAYEDIIKAT 550
Query: 577 EPNKVMILLISIIFPIAAFVAFLAHGTLFLLRRKNKRAELTSGEIKSQDRDAFSIWNCDG 636
E F I + +G+++ +A+L +G + + + W D
Sbjct: 551 ED-----------FDIKYCIGTGGYGSVY-------KAQLPTGNVVALKK--LHGWERDE 590
Query: 637 RIAFEEIIRATEDLISDIALELDVTAAFTKHG-CLVAEYGSEQGRSAFFKSFQNEAHVF- 694
I + + L + + H C+ Y + GR + + NE
Sbjct: 591 AIYLKSFQNEVQILSKIRHRNIVKLQGYCLHKRCMFLIY-NYMGRGSLYCVLSNEVEALE 649
Query: 695 -----------------------------------NNILLNSEFEAFFGNFGVARLLNSD 719
NNILL+S+ +AF +FG ARLL+ D
Sbjct: 650 LDWIKRVNVVKSIVHAVCYMHHDCTPPIIHRDISSNNILLDSKLDAFLSDFGTARLLHPD 709
Query: 720 SSNRTLIAGTYRYIAP--------------------------AKHPQEILSLFSSTSDPH 753
SSN+TL+AGTY YIAP KHP E+ +L SS+S +
Sbjct: 710 SSNQTLLAGTYGYIAPELAYTMVVTEKCDVYSFGVVALETMMGKHPGELFTLLSSSSTQN 769
Query: 754 ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL-KFPYL 810
I LT ILD R+ P+ Q++ +D+ L +AL C+ S P+S PTMQ + + L + P+L
Sbjct: 770 IMLTNILDSRLPSPQDQQVARDVVLVVWLALKCIHSNPRSRPTMQHILSKLLTQSPFL 827
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 305/954 (31%), Positives = 449/954 (47%), Gaps = 205/954 (21%)
Query: 51 NNSREKASNH---SDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFR 107
NNS +++H + CKW GI CN GS+IRI+L+ +G+RG L F+FS FPNL
Sbjct: 89 NNSTNSSTHHGTATGPCKWYGISCNHAGSVIRINLT-ESGLRGTLQAFSFSSFPNLAYVD 147
Query: 108 IWYSNISGNIPSEIGALSKLQILDLSHNN---------------------------LTGT 140
+ +N+SG IP +IG LSKL+ LDLS N L G+
Sbjct: 148 VCINNLSGPIPPQIGLLSKLKYLDLSTNQFSGGIPPEIGLLTNLEVLHLLALYTNQLEGS 207
Query: 141 IPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLT 200
IP+ LGNL+NL LYL + L+G IP +G+L L + +N+L G IP T G+L +LT
Sbjct: 208 IPASLGNLSNLASLYLYENQLSGSIPPEMGNLANLVEIYSDTNNLTGLIPSTFGNLKRLT 267
Query: 201 TLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260
TL LF+NQ++G IP + GNL L+ + L N L+GPI +++GDL+ L L L + QLSGP
Sbjct: 268 TLYLFNNQLSGHIPPEIGNLTSLQGISLYANNLSGPIPASLGDLSGLTLLHLYANQLSGP 327
Query: 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLT 320
+P EIG L++LV L L+ N L G IP++LG LT+L L L N L G P + L +L
Sbjct: 328 IPPEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNHLSGYFPKEIGKLHKLV 387
Query: 321 TLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLT-------------------- 360
L++ +N+++GS+P GI +L R +S N L GPIP +
Sbjct: 388 VLEIDTNRLSGSLPEGICQGGSLVRFTVSDNLLSGPIPKSMKNCRNLTRALFGGNQLTGN 447
Query: 361 ----IGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416
+GD NL Y+DLS N+ G + +G L+ L + N + GSIP + +L
Sbjct: 448 ISEVVGDCPNLEYIDLSYNRFHGELSHNWGRCPQLQRLEMAGNDITGSIPEDFGISTNLT 507
Query: 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQH---FKQKH----------S 463
L LS+N L G IP ++ +L+ L EL L+ N +SG PP+ F H S
Sbjct: 508 LLDLSSNHLVGEIPKKMGSLTSLLELKLNDNQLSGSIPPELGSLFSLAHLDLSANRLNGS 567
Query: 464 IRDRL-----LTYVNHQFNRLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLL 508
I + L L Y+N N+LS +IP +G LS LS G +P +I L
Sbjct: 568 ITENLGACLNLHYLNLSNNKLSNRIPAQMGKLSHLSQLDLSHNLLSGEIPPQIEGLESLE 627
Query: 509 NVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP---EFINRIMP-----ADLVPM 560
N+ LS+N+L G IP ++ L +D+SYN + G +P F + + DL
Sbjct: 628 NLNLSHNNLSGFIPKAFEEMRGLSDIDISYNQLQGPIPNSKAFRDATIELLKGNKDLCGN 687
Query: 561 INFSISPTPSPASPQQEP-NKVMILLISIIFPI-AAFVAFLAHGTLFLLRRKNKR----- 613
+ + P + + Q+P K ++ I+FP+ A V A +FL+ + KR
Sbjct: 688 VK-GLQPCKNDSGAGQQPVKKGHKIVFIIVFPLLGALVLLFAFIGIFLIAERTKRTPEIE 746
Query: 614 ----------------------------------------------AELTSGEIKSQDRD 627
AEL+SG I + +
Sbjct: 747 EGDVQNDLFSISTFDGRAMYEEIIKATKDFDPMYCIGKGGHGSVYKAELSSGNIVAVKKL 806
Query: 628 AFSIWNCDGRIAFEEIIRATEDLISDIALELDVTAAFTKHGCLVAEY------------- 674
S + + F +RA ++ ++L + +H LV EY
Sbjct: 807 YASDIDMANQRDFFNEVRALTEIKHRNIVKLLGFCSHPRHSFLVYEYLERGSLAAMLSRE 866
Query: 675 -GSEQGRSAFFKSFQNEAHVF------------------NNILLNSEFEAFFGNFGVARL 715
+ G + + AH NNILL+S++E +FG A+L
Sbjct: 867 EAKKLGWATRINIIKGVAHALSYMHHDCSPPIVHRDISSNNILLDSQYEPHISDFGTAKL 926
Query: 716 LNSDSSNRTLIAGTYRYIAP--------------------------AKHP-QEILSLFSS 748
L DSSN++ +AGT+ Y+AP +HP +ILSL S
Sbjct: 927 LKLDSSNQSALAGTFGYVAPEHAYTMKVTEKTDVYSFGVITLEVIKGRHPGDQILSLSVS 986
Query: 749 TSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802
+I L +LD R+ P Q + I++ ++ A ACL P+S PTM+ +SQ
Sbjct: 987 PEKENIVLEDMLDPRLPPLTAQDEGEVISIINL-ATACLSVNPESRPTMKIISQ 1039
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 304/979 (31%), Positives = 448/979 (45%), Gaps = 236/979 (24%)
Query: 50 WNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIW 109
+ NS CKW GI CN GS+IRI+L+ +G+ G L F+FS FPNL I
Sbjct: 63 FTNSSTHLGTEVSPCKWYGISCNHAGSVIRINLT-ESGLGGTLQAFSFSSFPNLAYVDIS 121
Query: 110 YSNISGNIPSEIGALSKLQILDLS------------------------------------ 133
+N+SG IP +IG LSKL+ LDLS
Sbjct: 122 MNNLSGPIPPQIGLLSKLKYLDLSINQFSGGIPPEIGLLTNLEVLHLVQNQLNGSIPHEI 181
Query: 134 ------------HNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181
N L G+IP+ LGNL+NL LYL + L+G IP +G+LT L L
Sbjct: 182 GQLTSLYELALYTNQLEGSIPASLGNLSNLASLYLYENQLSGSIPPEMGNLTNLVQLYSD 241
Query: 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTI 241
+N+L GPIP T G+L LT L LF+N ++G IP + GNL+ L+ + L GN L+GPI ++
Sbjct: 242 TNNLTGPIPSTFGNLKHLTVLYLFNNSLSGPIPPEIGNLKSLQGLSLYGNNLSGPIPVSL 301
Query: 242 GDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLS 301
DL+ L L L + QLSGP+PQEIG L++LV L L+ N L G IP++LG LT+L L L
Sbjct: 302 CDLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLR 361
Query: 302 HNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLT- 360
N L G P + L +L L++ +NQ+ GS+P GI +LER +S N L GPIP +
Sbjct: 362 DNRLSGYFPQEIGKLHKLVVLEIDTNQLFGSLPEGICQGGSLERFTVSDNHLSGPIPKSL 421
Query: 361 -----------------------IGDLTNLIYLDLSLNQ--------------------- 376
+GD NL ++DLS N+
Sbjct: 422 KNCRNLTRALFQGNRLTGNVSEVVGDCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIA 481
Query: 377 ---LSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433
++G IP FG T L L+L+SN L G IP ++ + SL LIL++N L+G IP E+
Sbjct: 482 GNNITGSIPEDFGISTNLILLDLSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPEL 541
Query: 434 RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRL-LTYVNHQFNRLSGQIPMTIGGLSK 492
+LS+L LDLS N ++G + P+H + D L L Y+N N+LS IP+ +G LS
Sbjct: 542 GSLSHLEYLDLSANRLNG-SIPEH------LGDCLDLHYLNLSNNKLSHGIPVQMGKLSH 594
Query: 493 LS----------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIP 542
LS G +P++I L + LS+N+L G IP + L Y+D+SYN +
Sbjct: 595 LSQLDLSHNLLTGGIPAQIQGLESLEMLDLSHNNLCGFIPKAFEDMPALSYVDISYNQLQ 654
Query: 543 GTVPE---FINRIMPA-----DLVPMINFSISPTPSPASPQQEP-NKVMILLISIIFPIA 593
G +P F N + DL + + P Q+P K ++ IIFP+
Sbjct: 655 GPIPHSNAFRNATIEVLKGNKDLCGNVK-GLQPCKYGFGVDQQPVKKSHKVVFIIIFPLL 713
Query: 594 AFVAFLAH--GTLFLLRRKNKRAELTSGEIKS------------------QDRDAFSIWN 633
+ L+ G + R+ + E+ G++++ + F
Sbjct: 714 GALVLLSAFIGIFLIAERRERTPEIEEGDVQNNLLSISTFDGRAMYEEIIKATKDFDPMY 773
Query: 634 CDGRIAFEEIIRA----------------------TEDLISDIALELDVT---------- 661
C G+ + +A +D ++ + ++
Sbjct: 774 CIGKGGHGSVYKAELPSGNIVAVKKLHPSDMDMANQKDFLNKVRAMTEIKHRNIVRLLGF 833
Query: 662 AAFTKHGCLVAEY--------------GSEQGRSAFFKSFQNEAHVF------------- 694
++ +H LV EY + G + K + AH
Sbjct: 834 CSYPRHSFLVYEYLERGSLATILSREEAKKLGWATRVKIIKGVAHALSYMHHDCSPPIVH 893
Query: 695 -----NNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP-------------- 735
NNILL+S++EA N G A+LL DSSN++ +AGT Y+AP
Sbjct: 894 RDISSNNILLDSQYEAHISNLGTAKLLKVDSSNQSKLAGTVGYVAPEHAYTMKVTEKTDV 953
Query: 736 ------------AKHPQEILSLFSSTSDPHITLTYILDQRISPPKKQKIVQDIALASIVA 783
+HP + + S + + +I L +LD R+ P Q + +A+ + A
Sbjct: 954 YSFGVIALEVIKGRHPGDQILSISVSPEKNIVLKDMLDPRLPPLTPQDEGEVVAIIKL-A 1012
Query: 784 LACLQSKPKSVPTMQRVSQ 802
ACL + P+S PTM+ +SQ
Sbjct: 1013 TACLNANPQSRPTMEIISQ 1031
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110020|ref|XP_002333160.1| predicted protein [Populus trichocarpa] gi|222835013|gb|EEE73462.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 299/810 (36%), Positives = 411/810 (50%), Gaps = 131/810 (16%)
Query: 5 FSVARVLFIWATVFICQ---VDVITDTFVTASIVPIRLEREALLNTGWWNNSREKASNHS 61
+V + F + +F+ V + D+ + AS E +ALL +GWW++ SN +
Sbjct: 11 LAVLSISFFLSCIFVSSTGLVAALDDSALLAS------EGKALLESGWWSD----YSNLT 60
Query: 62 DH-CKWAGIVCNLNGSIIRISLS-GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPS 119
H CKW GIVC+ GSI IS + K + NFSCF NL + +SG+IP
Sbjct: 61 SHRCKWTGIVCDRAGSITEISPPPEFLKVGNKFGKMNFSCFSNLVRLHLANHELSGSIPH 120
Query: 120 EIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN------------------- 160
+I L +L+ L+LS N L G +PS LGNL+ LVEL S +N
Sbjct: 121 QISILPQLRYLNLSSNYLAGELPSSLGNLSRLVELDFSSNNFINSIPPELGNLKSLVTLS 180
Query: 161 -----------------------------LNGPIPSTLGHLTRLSILDLSSNSLVGPIPF 191
L G +P +G++ L ILD+S N+L GPIP
Sbjct: 181 LSYNSFSGPIHSALCHLDNLTHLFMDHNRLEGALPREIGNMRNLEILDVSYNTLNGPIPR 240
Query: 192 TLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLD 251
TLG L +L +L N+ING IP + NL +L+ +DLS N L G I ST+G L+NLN +D
Sbjct: 241 TLGRLAKLRSLIFHVNKINGSIPFEIRNLTNLEYLDLSSNILGGSIPSTLGLLSNLNFVD 300
Query: 252 LSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP 311
L Q++GP+P +IG L NL YL L N +TG IP +LG L SL+ LDLSHN + G IP
Sbjct: 301 LLGNQINGPIPLKIGNLTNLQYLHLGGNKITGFIPFSLGNLKSLTMLDLSHNQINGSIPL 360
Query: 312 TLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLD 371
+ +LT L L L SN I+GSIP +G L NL +D+S N++ G IP +G+LT+LI LD
Sbjct: 361 EIQNLTNLKELYLSSNSISGSIPSTLGLLSNLISLDLSDNQITGLIPFLLGNLTSLIILD 420
Query: 372 LSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPS 431
LS NQ++G P +LT LK L L+SN ++GSIPS L +L SL LS+N +TG IP
Sbjct: 421 LSHNQINGSTPLETQNLTNLKELYLSSNSISGSIPSTLGLLSNLISLDLSDNQITGLIPF 480
Query: 432 EIRNLSYLHELDLSLNFISGMTP---------PQHFKQKHSIRDRL---------LTYVN 473
+ NL+ L LDLS N I+G TP + + +SI + LT+++
Sbjct: 481 LLGNLTSLIILDLSHNQINGSTPLETQNLTNLKELYLSSNSISGSIPSTLGLLSNLTFLD 540
Query: 474 HQFNRLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLDGTIPL 523
N+++G IP + L+ L+ GS+PS + C+ L + LS N+L IP
Sbjct: 541 LSNNQITGLIPFLLDNLTNLTTLYLSHNQINGSIPSSLKYCNNLAYLDLSFNNLSEEIPS 600
Query: 524 EMGKIIFLEYLDLSYNNIPGTV----PEFINRIMPADLVP-MIN---------------- 562
E+ + L+Y++ SYNN+ G+V P N D V IN
Sbjct: 601 ELYDLDSLQYVNFSYNNLSGSVSLPLPPPFNFHFTCDFVHGQINNDSATLKATAFEGNKD 660
Query: 563 ----FSISPT--PSPASPQQEPNK--VMILLISIIFPIAAFVAFLAHGTLFLLRRKNKRA 614
FS P+ P P+ P+K +I I I PI L +L R K
Sbjct: 661 LHPDFSRCPSIYPPPSKTYLLPSKDSRIIHSIKIFLPITTISLCLLCLGCYLSRCKATEP 720
Query: 615 ELTSGEIKSQDRDAFSIWNCDGRIAFEEIIRATEDLISDIALEL----DVTAAFTKHGCL 670
E TS S++ D FSIWN DGRIA+E+II ATE+ + V A G L
Sbjct: 721 ETTS----SKNGDLFSIWNYDGRIAYEDIIAATENFDLRYCIGTGGYGSVYRAQLPSGKL 776
Query: 671 VA---EYGSEQGRSAFFKSFQNEAHVFNNI 697
VA + E AF KSF+NE + I
Sbjct: 777 VALKKLHRREAEEPAFDKSFKNEVELLTQI 806
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085303|emb|CBI29035.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 269/821 (32%), Positives = 398/821 (48%), Gaps = 124/821 (15%)
Query: 61 SDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSE 120
S HC W GI CN G ++RI+ S ++G +L + FS FP+L
Sbjct: 6 SHHCTWEGITCNTEGHVVRITYSYIDGKMVELSKLKFSSFPSLLH--------------- 50
Query: 121 IGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180
L++SH+++ G IP ++G L L L +S +++G +P +LG+LT L LDL
Sbjct: 51 ---------LNVSHSSIYGRIPDEIGMLTKLTYLRISECDVHGELPVSLGNLTLLEELDL 101
Query: 181 SSNSLVGPIPFTLGHLTQLTTLKL-FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIAS 239
+ N+L G IP +LG+L L L L F+ ++G IP G L++LK +DLS N++NG I
Sbjct: 102 AYNNLSGVIPSSLGYLKNLIHLDLSFNYGLSGVIPSSLGYLKNLKYLDLSINEINGSIPY 161
Query: 240 TIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLD 299
IG+L NL L L S LSG +P + L NL YL LN N + G IPS +G L +L L
Sbjct: 162 QIGNLKNLTHLYLVSNSLSGVIPSSLANLSNLEYLFLNFNRINGSIPSEIGNLKNLVQLC 221
Query: 300 LSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPL 359
SHNSL G IPP+L HLT LT L LF+NQI G IPL G+L L +++ N++ G IP
Sbjct: 222 FSHNSLIGTIPPSLGHLTNLTYLHLFNNQIQGGIPLSFGHLTKLTDLNLCDNQINGSIPP 281
Query: 360 TIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLI 419
I +L NLI+L L N L+G IPS+ G+L L N++ N++NG IPS + N +L L
Sbjct: 282 IIWNLKNLIHLRLDHNNLTGVIPSSLGYLIHLNEFNISGNRINGHIPSTIGNLNNLTRLD 341
Query: 420 LSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRL 479
LS N + G+IPS+++NL L L+LS N +SG P I D + ++ N L
Sbjct: 342 LSANLIHGKIPSQVQNLKRLTYLNLSHNKLSGSIPTL------LIYDHIKPSLDLSHNDL 395
Query: 480 SGQIPMTIGGLSKLS-GSVPSEIGNCSGLLNVTLSNNSLDGT--IPLEMGKIIFLEYLDL 536
G IP + SK S GS + G C + + T I + + +FL ++ L
Sbjct: 396 EGHIPFELQ--SKFSQGSFDNNKGLCGDIKGLPHCKEEYKTTRIIVISLSTTLFLFFVVL 453
Query: 537 SYNNIPGTVPEFINRIMP---ADLVPMINFSISPTPSPASPQQEPNKVMILLISIIFPIA 593
+ + + + +P D+ + N+ E F I
Sbjct: 454 GFLLLSRKTRKIQTKEIPTKNGDIFSVWNYDGKIAYEDIIKATED-----------FDIK 502
Query: 594 AFVAFLAHGTLFLLRRKNKRAELTSGEIKSQDRDAFSIWNCDGRIAFEEIIRATEDLISD 653
+ +G+++ +A+L +G + + + W D I + + L
Sbjct: 503 YCIGTGGYGSVY-------KAQLPTGNVVALKK--LHGWERDEAIYLKSFQNEVQILSKI 553
Query: 654 IALELDVTAAFTKHG-CLVAEYGSEQGRSAFFKSFQNEAHVF------------------ 694
+ + H C+ Y + GR + + NE
Sbjct: 554 RHRNIVKLQGYCLHKRCMFLIY-NYMGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAV 612
Query: 695 ------------------NNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP- 735
NNILL+S+ +AF +FG ARLL+ DSSN+TL+AGTY YIAP
Sbjct: 613 CYMHHDCTPPIIHRDISSNNILLDSKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPE 672
Query: 736 -------------------------AKHPQEILSLFSSTSDPHITLTYILDQRISPPKKQ 770
KHP E+ +L SS+S +I LT ILD R+ P+ Q
Sbjct: 673 LAYTMVVTEKCDVYSFGVVALETMMGKHPGELFTLLSSSSTQNIMLTNILDSRLPSPQDQ 732
Query: 771 KIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL-KFPYL 810
++ +D+ L +AL C+ S P+S PTMQ + + L + P+L
Sbjct: 733 QVARDVVLVVWLALKCIHSNPRSRPTMQHILSKLLTQSPFL 773
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110038|ref|XP_002333164.1| predicted protein [Populus trichocarpa] gi|222835017|gb|EEE73466.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 280/737 (37%), Positives = 387/737 (52%), Gaps = 69/737 (9%)
Query: 5 FSVARVLFIWATVFICQ---VDVITDTFVTASIVPIRLEREALLNTGWWNNSREKASNHS 61
+V + F + +F+ V + D+ + AS E +ALL +GWW++ SN +
Sbjct: 11 LAVLSISFFLSCIFVSSTGLVAALDDSALLAS------EGKALLESGWWSD----YSNLT 60
Query: 62 DH-CKWAGIVCNLNGSIIRISLS-GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPS 119
H CKW GIVC+ GSI +IS + K + NFSCF NL + +SG+IP
Sbjct: 61 SHRCKWTGIVCDGAGSITKISPPPEFLKVGNKFGKMNFSCFSNLVRLHLANHELSGSIPP 120
Query: 120 EIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILD 179
+I L +L+ L+LS NNL G +PS LGNL+ LVEL S +NL IP LG+L L L
Sbjct: 121 QISILPQLRYLNLSSNNLAGELPSSLGNLSRLVELDFSSNNLTNSIPPELGNLKNLVTLS 180
Query: 180 LSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIAS 239
LS N GPIP L HL L L + N + G +P + GN+++L+ +D+S N LNGPI
Sbjct: 181 LSDNIFSGPIPSALCHLENLRHLFMDHNSLEGALPREIGNMKNLEILDVSYNTLNGPIPR 240
Query: 240 TIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLD 299
T+G L L SL LS + G +P EIG L NL L+L N L G IPST+G L +L L
Sbjct: 241 TMGSLAKLRSLILSRNAIDGSIPLEIGNLTNLEDLNLCSNILVGSIPSTMGLLPNLISLF 300
Query: 300 LSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPL 359
L N + G IP + +LT L L L SN + GSIP G L NL VD+SSN++ GPIPL
Sbjct: 301 LCENHIQGSIPLKIGNLTNLEYLVLGSNILGGSIPSTSGFLSNLIFVDISSNQINGPIPL 360
Query: 360 TIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLI 419
IG+LTNL YL+L N+++G IP + G+L L L L+ N++NGSIP E+ N L+ L
Sbjct: 361 EIGNLTNLQYLNLDGNKITGLIPFSLGNLRNLTTLYLSHNQINGSIPLEIQNLTKLEELY 420
Query: 420 LSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRL 479
L +N+++G IP+ + L+ L L L N I+G P + Q + + L Y N+ +
Sbjct: 421 LYSNNISGSIPTTMGRLTSLRFLSLYDNQINGSIPLE--IQNLTKLEELYLYSNN----I 474
Query: 480 SGQIPMTIGGLSKLS-------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLE 532
SG IP +G L +L+ G + S + NC+ L + LS N+L IP + + L+
Sbjct: 475 SGSIPTIMGSLRELNLSRNQMNGPISSSLKNCNNLTLLDLSCNNLSEEIPYNLYNLTSLQ 534
Query: 533 YLDLSYNNIPGTVPEFINRIMPADLVPMI----------------------NFSISPTPS 570
+ SYNN+ G VP +N P D N + P S
Sbjct: 535 KANFSYNNLSGPVP--LNLKPPFDFYFTCDLLLHGHITNDSATFKATAFEGNKDLHPDLS 592
Query: 571 PASPQQEPNKVMILLISIIFPIAAFVAFLAHGTLFLLRRKNKRAELTSGEIKS-QDRDAF 629
S + N+ MI I I PI+ ++ L L R + T E S ++ D F
Sbjct: 593 NCSLPSKTNR-MIHSIKIFLPIST----ISLCLLCLGCCYLSRCKATQPEPTSLKNGDLF 647
Query: 630 SIWNCDGRIAFEEIIRATEDLISDIALEL------DVTAAFTKHGCLVA---EYGSEQGR 680
SIWN DGRIA+E+II ATE+ D+ + V A G LVA + E
Sbjct: 648 SIWNYDGRIAYEDIIAATENF--DLRYCIGSGGYGSVYRAQLPSGKLVALKKLHHREAEE 705
Query: 681 SAFFKSFQNEAHVFNNI 697
AF KSF+NE + I
Sbjct: 706 PAFDKSFKNEVELLTQI 722
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357451683|ref|XP_003596118.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355485166|gb|AES66369.1| Receptor protein kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 261/728 (35%), Positives = 381/728 (52%), Gaps = 83/728 (11%)
Query: 37 IRLEREALLNTGWWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGK----- 91
+++E A+LN+GWWN S N SD C GI CN GSII I + +
Sbjct: 25 LQMEANAILNSGWWNTSYADF-NISDRCHGHGIFCNDAGSIIAIKIDSDDSTYAAWEYDY 83
Query: 92 ----LDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGN 147
L N +CF NLES I + G IP EIG LSKL LD+S+NNL G +P LGN
Sbjct: 84 KTRNLSTLNLACFKNLESLVIRKIGLEGTIPKEIGHLSKLTHLDMSYNNLQGQVPHSLGN 143
Query: 148 LNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
L+ L L LS + L G +P +LG+L++L+ LDLS N L G +P +LG+L++LT L L N
Sbjct: 144 LSKLTHLDLSANILKGQVPHSLGNLSKLTHLDLSDNILSGVVPHSLGNLSKLTHLDLSDN 203
Query: 208 QINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGY 267
++G +P GNL L +DLS N L+G + ++G+L+ L LDLS L G +P +G
Sbjct: 204 LLSGVVPHSLGNLSKLTHLDLSDNLLSGVVPPSLGNLSKLTHLDLSVNLLKGQVPHSLGN 263
Query: 268 LENLV------------------------YLSLNVNNLTGPIPSTLGRLTSLSDLDLSHN 303
L L YL ++ NNL G IP LG + L L+LS N
Sbjct: 264 LSKLTHLDFSYNSLEGEIPNSLGNHRQLKYLDISNNNLNGSIPHELGFIKYLGSLNLSTN 323
Query: 304 SLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGD 363
+ G IPP+L +L +LT L ++ N + G IP IGNL +LE +++S N ++G IP +G
Sbjct: 324 RISGDIPPSLGNLVKLTHLVIYGNSLVGKIPPSIGNLRSLESLEISDNYIQGSIPPRLGL 383
Query: 364 LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423
L NL L LS N++ G IP + G+L L+ L++++N + G +P EL +L +L LS+N
Sbjct: 384 LKNLTTLRLSHNRIKGEIPPSLGNLKQLEELDISNNNIQGFLPFELGLLKNLTTLDLSHN 443
Query: 424 SLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTY------------ 471
L G +P ++NL+ L L+ S NF +G P +F Q ++ LL+
Sbjct: 444 RLNGNLPISLKNLTQLIYLNCSYNFFTGFL-PYNFDQSTKLKVLLLSRNSIGGIFPFSLK 502
Query: 472 -VNHQFNRLSGQIP---------MTIGGLSK--LSGSVPSEIGNCSGLLNVTLSNNSLDG 519
++ N L G +P +T LS +SG +PSE+G L TL NN+L G
Sbjct: 503 TLDISHNLLIGTLPSNLFPFIDYVTSMDLSHNLISGEIPSELGYFQQL---TLRNNNLTG 559
Query: 520 TIPLEMGKIIFLEYLDLSYNNIPGTVPEFIN--RIMPADLVPMINFSISPTPSPASPQQE 577
TIP + +I Y+D+SYN + G +P + ++ +D+ F P SP ++
Sbjct: 560 TIPQSLCNVI---YVDISYNCLKGPIPICLQTTKMENSDICSFNQF------QPWSPHKK 610
Query: 578 PNKVM-ILLISIIFPIAAFVAFLAHGTLFLLRRKNKRAELTSGEIKSQDRDAFSIWNCDG 636
NK+ I++I I I + FL L +K+ S +IK + D F IWN DG
Sbjct: 611 NNKLKHIVVIVIPMLIILVIVFLLLICFNLHHNSSKKLHGNSTKIK--NGDMFCIWNYDG 668
Query: 637 RIAFEEIIRATEDLISDIALELDVTAAFTK----HGCLVA---EYGSEQGRSAFFKSFQN 689
IA+++II+ATED + + K G +VA +G E +F +SF+N
Sbjct: 669 MIAYDDIIKATEDFDMRYCIGTGAYGSVYKAQLPSGKVVALKKLHGYEAEVPSFDESFRN 728
Query: 690 EAHVFNNI 697
E + I
Sbjct: 729 EVRILTEI 736
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065673|ref|XP_002301914.1| predicted protein [Populus trichocarpa] gi|222843640|gb|EEE81187.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 352 bits (902), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 276/726 (38%), Positives = 382/726 (52%), Gaps = 65/726 (8%)
Query: 11 LFIWATVFICQVDVITDTFVTASIVPIRLEREALLNTGWWNNSREKASNHSDH-CKWAGI 69
+F+ +T + +D D+ + AS E +AL+ +GWW++ SN + H C W GI
Sbjct: 23 IFVSSTGLVAALD---DSALLAS------EGKALVESGWWSD----YSNLTSHRCNWTGI 69
Query: 70 VCNLNGSIIRISLS-GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQ 128
VC+ GSI +IS + K + NFSCF NL + +SG+IP +I L +L+
Sbjct: 70 VCDGAGSITKISPPPEFLKVGNKFGKMNFSCFSNLVRLHLANHELSGSIPPQISILPQLR 129
Query: 129 ILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGP 188
L+LS NNL G +PS LGNL+ LVEL S +NL IP LG+L L L LS N GP
Sbjct: 130 YLNLSSNNLAGELPSSLGNLSRLVELDFSSNNLTNSIPPELGNLKNLVTLSLSDNIFSGP 189
Query: 189 IPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN 248
IP L HL L L + N + G +P + GN+++L+ +D+S N LNGPI T+G L L
Sbjct: 190 IPSALCHLENLRHLFMDHNSLEGALPREIGNMKNLEILDVSYNTLNGPIPRTMGSLAKLR 249
Query: 249 SLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGP 308
SL LS ++ +P EIG L NL L+L N L G IPST+G L +L L L N + G
Sbjct: 250 SLILSRNAINESIPLEIGNLTNLEDLNLCSNILVGSIPSTMGLLPNLISLFLCENHIQGS 309
Query: 309 IPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLI 368
IP + +LT L L L SN + GSIP G L NL VD+SSN++ GPIPL IG+LTNL
Sbjct: 310 IPLKIGNLTNLEYLVLGSNILGGSIPSTSGFLSNLIFVDISSNQINGPIPLEIGNLTNLQ 369
Query: 369 YLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428
YL+L N+++G IP + G+L L L L+ N++NGSIP E+ N L+ L L +N+++G
Sbjct: 370 YLNLDGNKITGLIPFSLGNLRNLTTLYLSHNQINGSIPLEIQNLTKLEELYLYSNNISGS 429
Query: 429 IPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIG 488
IP+ + L+ L L L N I+G P + Q + + L Y N+ +SG IP +G
Sbjct: 430 IPTTMGRLTSLRFLSLYDNQINGSIPLE--IQNLTKLEELYLYSNN----ISGSIPTIMG 483
Query: 489 GLSKLS-------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
L KL+ G + S + NC+ L + LS N+L IP + + L+ + SYNN+
Sbjct: 484 SLRKLNLSRNQMNGPISSSLKNCNNLTLLDLSCNNLSEEIPYNLYNLTSLQKANFSYNNL 543
Query: 542 PGTVPEFINRIMPADLVPMI----------------------NFSISPTPSPASPQQEPN 579
G VP +N P D N + P S S + N
Sbjct: 544 SGPVP--LNLKPPFDFYFTCDLLLHGHITNDSATFKATAFEGNRYLHPDFSNCSLPSKTN 601
Query: 580 KVMILLISIIFPIAAFVAFLAHGTLFLLRRKNKRAELTSGEIKS-QDRDAFSIWNCDGRI 638
+ MI I I PI A ++ L L R + T E S ++ D FSIWN DGRI
Sbjct: 602 R-MIHSIKIFLPITA----ISLCLLCLGCCYLSRCKATQPEPTSLKNGDLFSIWNYDGRI 656
Query: 639 AFEEIIRATEDLISDIALEL----DVTAAFTKHGCLVA---EYGSEQGRSAFFKSFQNEA 691
A+E+II ATE+ + +V A G LVA + E AF KS +NE
Sbjct: 657 AYEDIIAATENFDLRYCIGTGGYGNVYRAQLPSGKLVALKKLHRREAEEPAFDKSLKNEV 716
Query: 692 HVFNNI 697
+ I
Sbjct: 717 ELLTQI 722
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484063|ref|XP_002270651.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 342 bits (878), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 278/756 (36%), Positives = 391/756 (51%), Gaps = 123/756 (16%)
Query: 37 IRLEREALLNTGWWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFN 96
+ E EAL N+ WW E ++H HC W GI CN G +I+I+ S ++G +L Q
Sbjct: 40 VEAEAEALRNSTWWW-YMENTTSH--HCTWDGITCNREGHVIQITYSYIDGTMVELSQLK 96
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
FS FP+L + +S+I G IP EIG L+KL L +S ++ G +P LGNL L EL L
Sbjct: 97 FSSFPSLLHLNVSHSSIYGPIPDEIGMLTKLTYLRISECDVYGELPVSLGNLTLLEELDL 156
Query: 157 SRS-NLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS--------- 206
S + +L G IPS+LG LT L L L+ N + PIP +G+L L L L S
Sbjct: 157 SYNYDLFGAIPSSLGSLTNLEYLSLNFNRINAPIPSEIGNLKNLIHLDLGSNSLSSVLPY 216
Query: 207 -----NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPL 261
N+IN IP + GNL++L +DLS N L+ I+S++G+LTNL LDLS ++ +
Sbjct: 217 LSLNFNRINDPIPSEIGNLKNLIHLDLSYNSLSSVISSSLGNLTNLEYLDLSFNSINCSI 276
Query: 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGP------------- 308
P EIG L+NLV L+L+ N+L+ IPS LG LT+L LDLS NS+ G
Sbjct: 277 PFEIGNLKNLVALNLSSNSLSSVIPSFLGNLTNLEYLDLSFNSINGSIPFEIGNLRNVVA 336
Query: 309 -----------IPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357
IP +L +LT L L L N INGSIP IGNL N+ +++S N L I
Sbjct: 337 LNLSSNSLSSVIPSSLGNLTNLEYLDLSFNSINGSIPFEIGNLRNVVALNLSYNSLSSVI 396
Query: 358 PLTIGDLTNLIYLDLSLNQLSGP------------------------IPSTFGHLTLLKF 393
P ++G+LTNL YLDLS N ++G IPS G+LT L++
Sbjct: 397 PSSLGNLTNLEYLDLSFNSINGSIPFEIGNLRNVVALNLSSNSLSSVIPSFLGNLTNLEY 456
Query: 394 LNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT 453
L+L+ N +NGSIPSE+ N +L +L LS+N L+ IPS + NL+ L L L+LN + G
Sbjct: 457 LDLSFNSINGSIPSEIGNLKNLAALNLSSNYLSSVIPSSLGNLTNLVTLSLTLNSLVGAI 516
Query: 454 PPQHFKQKHSIRDRL-LTYVNHQFNRLSGQIPMTIGGLSKLSG----------SVPSEIG 502
P S+ + + LT N N++ G IP IG L ++ +PS++
Sbjct: 517 PS-------SVGNLINLTEFNICGNQIRGCIPFEIGNLKNMASLDLSDNLINVKIPSQLQ 569
Query: 503 NCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMIN 562
N L N+ LS+N L G IP + K +L +DLSYN++ G +P I
Sbjct: 570 NLESLENLNLSHNKLSGHIP-TLPKYGWLS-IDLSYNDLEGHIP--------------IE 613
Query: 563 FSISPTPSPAS------------PQQEPNKVMILLISIIFPIAAFVAFLAHGTLFLLRRK 610
+ +P S P + +L+ +I F+ F G L L R+
Sbjct: 614 LQLEHSPEVFSYNKGLCGEIKGWPHCKRGHKTMLITTIAISTILFLLFAVFGFLLLSRKM 673
Query: 611 NKRAELTSGEIKSQDRDAFSIWNCDGRIAFEEIIRATEDLISDIALELDVTAAFTKH--- 667
+ T + ++ D FSIWN DG+IA+E+II ATED DI + T +
Sbjct: 674 RQNQTKTPLKKNEKNGDIFSIWNYDGKIAYEDIIEATEDF--DIKYCIGTGGYGTVYKAQ 731
Query: 668 ---GCLVA---EYGSEQGRSAFFKSFQNEAHVFNNI 697
G +VA +G E+ + +FKSFQNE V + I
Sbjct: 732 LPTGNVVALKKLHGWERDEATYFKSFQNEVQVLSKI 767
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 818 | ||||||
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.634 | 0.463 | 0.319 | 4.3e-80 | |
| TAIR|locus:2138268 | 1045 | AT4G08850 [Arabidopsis thalian | 0.594 | 0.465 | 0.324 | 4.8e-80 | |
| TAIR|locus:2154344 | 1135 | AT5G48940 [Arabidopsis thalian | 0.595 | 0.429 | 0.315 | 3.9e-70 | |
| TAIR|locus:2167948 | 966 | ERL1 "ERECTA-like 1" [Arabidop | 0.704 | 0.596 | 0.302 | 7.3e-67 | |
| TAIR|locus:2046525 | 1124 | AT2G33170 [Arabidopsis thalian | 0.568 | 0.413 | 0.317 | 8e-67 | |
| TAIR|locus:2020417 | 1101 | AT1G17230 [Arabidopsis thalian | 0.553 | 0.411 | 0.322 | 1.2e-66 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.600 | 0.430 | 0.310 | 2.6e-66 | |
| TAIR|locus:2160791 | 1102 | AT5G63930 [Arabidopsis thalian | 0.607 | 0.450 | 0.303 | 2.9e-66 | |
| TAIR|locus:2156349 | 1252 | GSO2 "GASSHO 2" [Arabidopsis t | 0.561 | 0.366 | 0.336 | 3.9e-66 | |
| TAIR|locus:2161825 | 1090 | AT5G56040 [Arabidopsis thalian | 0.591 | 0.444 | 0.330 | 4.1e-65 |
| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 4.3e-80, Sum P(3) = 4.3e-80
Identities = 175/547 (31%), Positives = 247/547 (45%)
Query: 18 FICQVDVITDTFVTASIVPIRLEREALLN-TGWWNNSREKAS-------NHSDHC-KWAG 68
F+ + +I ++AS E ALL + NS + +S N S C W G
Sbjct: 13 FLLFISIILSCSISASATIA--EANALLKWKSTFTNSSKLSSWVHDANTNTSFSCTSWYG 70
Query: 69 IVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQ 128
+ CN GSI ++L+ GI G F F NL + + +SG IP + G LSKL
Sbjct: 71 VSCNSRGSIEELNLTNT-GIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLI 129
Query: 129 ILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGP 188
DLS N+LTG I LGNL NL LYL ++ L IPS LG++ ++ L LS N L G
Sbjct: 130 YFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGS 189
Query: 189 IPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGXXXXXX 248
IP +LG+L L L L+ N + G IP + GN+ + ++ LS NKL G I ST+G
Sbjct: 190 IPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLM 249
Query: 249 XXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXXXXXXFGP 308
L+G +P EIG TG IP G
Sbjct: 250 VLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGG 309
Query: 309 IPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLI 368
IPP L ++ + L+L +N++ GSIP +GNL+NL + + N L G IP +G++ ++I
Sbjct: 310 IPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMI 369
Query: 369 YLDLSLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSIPSELMNCFXXXXXXXXXXXXTGR 428
L L+ N+L+G IPS+FG+ G IP EL N TG
Sbjct: 370 DLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGS 429
Query: 429 IPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTI- 487
+P N + L L L +N +SG PP H LT + N +G P T+
Sbjct: 430 VPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSH------LTTLILDTNNFTGFFPETVC 483
Query: 488 -G--------GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSY 538
G + L G +P + +C L+ N G I G L ++D S+
Sbjct: 484 KGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSH 543
Query: 539 NNIPGTV 545
N G +
Sbjct: 544 NKFHGEI 550
|
|
| TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 4.8e-80, Sum P(3) = 4.8e-80
Identities = 164/505 (32%), Positives = 235/505 (46%)
Query: 59 NHSDHC-KWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNI 117
N S C W G+ C+L GSIIR++L+ GI G + F FS PNL + + SG I
Sbjct: 77 NTSSFCTSWYGVACSL-GSIIRLNLTNT-GIEGTFEDFPFSSLPNLTFVDLSMNRFSGTI 134
Query: 118 PSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177
G SKL+ DLS N L G IP +LG+L+NL L+L + LNG IPS +G LT+++
Sbjct: 135 SPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTE 194
Query: 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI 237
+ + N L GPIP + G+LT+L L LF N ++G IP + GNL +L+E+ L N L G I
Sbjct: 195 IAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKI 254
Query: 238 ASTIGXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXX 297
S+ G QLSG +P EIG TGPIP
Sbjct: 255 PSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAV 314
Query: 298 XXXXXXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357
G IPP L + + L++ N++ G +P G L LE + + N+L GPI
Sbjct: 315 LHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPI 374
Query: 358 PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSIPSELMNCFXXXX 417
P I + T L L L N +G +P T G +P L +C
Sbjct: 375 PPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIR 434
Query: 418 XXXXXXXXTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFN 477
+G I L+ +DLS N G +++Q +L+ ++ N
Sbjct: 435 VRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSA-NWEQSQ----KLVAFILSN-N 488
Query: 478 RLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGK 527
++G IP I +++LS G +P I N + + + L+ N L G IP +
Sbjct: 489 SITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRL 548
Query: 528 IIFLEYLDLSYNNIPGTVPEFINRI 552
+ LEYLDLS N +P +N +
Sbjct: 549 LTNLEYLDLSSNRFSSEIPPTLNNL 573
|
|
| TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 3.9e-70, Sum P(3) = 3.9e-70
Identities = 159/504 (31%), Positives = 243/504 (48%)
Query: 61 SDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSE 120
SD C+W I C+ + + + ++ V+ N S F +L+ I +N++G I SE
Sbjct: 66 SDPCQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTGAISSE 125
Query: 121 IGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180
IG S+L ++DLS N+L G IPS LG L NL EL L+ + L G IP LG L L++
Sbjct: 126 IGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEI 185
Query: 181 SSNSLVGPIPFTLGHLTQLTTLKLFSN-QINGCIPLDFGNLRHLKEVDLSGNKLNGPIAS 239
N L +P LG ++ L +++ N +++G IP + GN R+LK + L+ K++G +
Sbjct: 186 FDNYLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPV 245
Query: 240 TIGXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXX 299
++G LSG +P+E+G +G +P
Sbjct: 246 SLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKML 305
Query: 300 XXXXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPL 359
GPIP + + L + L N +G+IP GNL NL+ + +SSN + G IP
Sbjct: 306 LWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPS 365
Query: 360 TIGDLTNLIYLDLSLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSIPSELMNCFXXXXXX 419
+ + T L+ + NQ+SG IP G G+IP EL C
Sbjct: 366 ILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALD 425
Query: 420 XXXXXXTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRL 479
TG +P+ + L L +L L N ISG+ P + +R RL VN NR+
Sbjct: 426 LSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRL---VN---NRI 479
Query: 480 SGQIPMTIGGL----------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKII 529
+G+IP IG L + LSG VP EI NC L + LSNN+L G +PL + +
Sbjct: 480 TGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLT 539
Query: 530 FLEYLDLSYNNIPGTVPEFINRIM 553
L+ LD+S N++ G +P+ + ++
Sbjct: 540 KLQVLDVSSNDLTGKIPDSLGHLI 563
|
|
| TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 7.3e-67, Sum P(3) = 7.3e-67
Identities = 185/611 (30%), Positives = 271/611 (44%)
Query: 59 NHSDHCKWAGIVC-NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNI 117
++SD C W G+ C N++ S++ ++LS +N + G++ NL+S + + ++G I
Sbjct: 54 HNSDLCSWRGVFCDNVSYSVVSLNLSSLN-LGGEISPA-IGDLRNLQSIDLQGNKLAGQI 111
Query: 118 PSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177
P EIG + L LDLS N L G IP + L L L L + L GP+P+TL + L
Sbjct: 112 PDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKR 171
Query: 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI 237
LDL+ N L G I L L L L N + G + D L L D+ GN L G I
Sbjct: 172 LDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTI 231
Query: 238 ASTIGXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXX 297
+IG Q++G +P IG TG IP
Sbjct: 232 PESIGNCTSFQILDISYNQITGEIPYNIGFLQVATLSLQGNRL-TGRIPEVIGLMQALAV 290
Query: 298 XXXXXXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357
GPIPP L +L+ L L N + G IP +GN+ L + ++ NKL G I
Sbjct: 291 LDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTI 350
Query: 358 PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSIPSELMNCFXXXX 417
P +G L L L+L+ N+L GPIPS GSIP N
Sbjct: 351 PPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTY 410
Query: 418 XXXXXXXXTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFN 477
G+IP E+ ++ L +LDLS N SG P +H L +N N
Sbjct: 411 LNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSGSIPLTLGDLEH------LLILNLSRN 464
Query: 478 RLSGQIPMTIGGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGK 527
LSGQ+P G L LSG +P+E+G L ++ L+NN L G IP ++
Sbjct: 465 HLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTN 524
Query: 528 IIFLEYLDLSYNNIPGTVPEFIN--RIMPADLV--PMI--NFSISPT-PSPASPQQEPNK 580
L L++S+NN+ G VP N R PA V P + N+ S P P S
Sbjct: 525 CFTLVNLNVSFNNLSGIVPPMKNFSRFAPASFVGNPYLCGNWVGSICGPLPKSRVFSRGA 584
Query: 581 VMILLISIIFPIAAFVAFLAHGTLFLLRRKNKRAELTSGEIKSQDRDAFSIWNCDGRI-A 639
++ +++ +I + + FLA + + ++ L +++ I + D I
Sbjct: 585 LICIVLGVITLLC--MIFLA-----VYKSMQQKKILQGSSKQAEGLTKLVILHMDMAIHT 637
Query: 640 FEEIIRATEDL 650
F++I+R TE+L
Sbjct: 638 FDDIMRVTENL 648
|
|
| TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 8.0e-67, Sum P(3) = 8.0e-67
Identities = 154/485 (31%), Positives = 218/485 (44%)
Query: 75 GSIIRISLSGV--NGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDL 132
G + + L G+ N I G+L + L+ +W + SG IP +IG L+ L+ L L
Sbjct: 226 GKCLNLKLLGLAQNFISGELPK-EIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLAL 284
Query: 133 SHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFT 192
N+L G IPS++GN+ +L +LYL ++ LNG IP LG L+++ +D S N L G IP
Sbjct: 285 YGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVE 344
Query: 193 LGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGXXXXXXXXXX 252
L +++L L LF N++ G IP + LR+L ++DLS N L GPI
Sbjct: 345 LSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQL 404
Query: 253 XXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXXXXXXFGPIPPT 312
LSG +PQ +G +G IP FG IPP
Sbjct: 405 FHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPG 464
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDL 372
+ L L++ N++ G P + L NL +++ N+ GP+P IG L L L
Sbjct: 465 VLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHL 524
Query: 373 SLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSIPSELMNCFXXXXXXXXXXXXTGRIPSE 432
+ NQ S +P+ G IPSE+ NC G +P E
Sbjct: 525 AANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPE 584
Query: 433 IRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSK 492
+ +L L L LS N SG P H LT + N SG IP +G LS
Sbjct: 585 LGSLHQLEILRLSENRFSGNIPFTIGNLTH------LTELQMGGNLFSGSIPPQLGLLSS 638
Query: 493 L-----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
L SG +P EIGN L+ ++L+NN L G IP + L + SYNN+
Sbjct: 639 LQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNL 698
Query: 542 PGTVP 546
G +P
Sbjct: 699 TGQLP 703
|
|
| TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 153/475 (32%), Positives = 216/475 (45%)
Query: 86 NGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKL 145
N + G L + NL +W + +SG IP +G +S+L++L L N TG+IP ++
Sbjct: 221 NLLEGSLPK-QLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREI 279
Query: 146 GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205
G L + LYL + L G IP +G+L + +D S N L G IP GH+ L L LF
Sbjct: 280 GKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLF 339
Query: 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGXXXXXXXXXXXXKQLSGPLPQEI 265
N + G IP + G L L+++DLS N+LNG I + QL G +P I
Sbjct: 340 ENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLI 399
Query: 266 GXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXXXXXXFGPIPPTLSHLTRLTTLKLF 325
G +GPIP G IP L LT L L
Sbjct: 400 GFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLG 459
Query: 326 SNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTF 385
NQ+ GS+P+ + NL+NL +++ N L G I +G L NL L L+ N +G IP
Sbjct: 460 DNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEI 519
Query: 386 GHXXXXXXXXXXXXXXXGSIPSELMNCFXXXXXXXXXXXXTGRIPSEIRNLSYLHELDLS 445
G+ G IP EL +C +G I E+ L YL L LS
Sbjct: 520 GNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLS 579
Query: 446 LNFISGMTPPQHFKQKHSIRDRLLTYVNHQF--NRLSGQIPMTIGGLSKL---------- 493
N ++G P HS D L + Q N LS IP+ +G L+ L
Sbjct: 580 DNRLTGEIP-------HSFGD-LTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNN 631
Query: 494 -SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547
SG++P +GN L + L++N L G IP +G ++ L ++S NN+ GTVP+
Sbjct: 632 LSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPD 686
|
|
| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 2.6e-66, Sum P(3) = 2.6e-66
Identities = 160/515 (31%), Positives = 238/515 (46%)
Query: 50 WNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIW 109
WN+ N+ W I C+ G I I + V ++ L + N F +L+ I
Sbjct: 61 WNSIDNTPCNN-----WTFITCSSQGFITDIDIESVP-LQLSLPK-NLPAFRSLQKLTIS 113
Query: 110 YSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTL 169
+N++G +P +G L++LDLS N L G IP L L NL L L+ + L G IP +
Sbjct: 114 GANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDI 173
Query: 170 GHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN-QINGCIPLDFGNLRHLKEVDL 228
++L L L N L G IP LG L+ L +++ N +I+G IP + G+ +L + L
Sbjct: 174 SKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGL 233
Query: 229 SGNKLNGPIASTIGXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXX 288
+ ++G + S++G +SG +P ++G +G IP
Sbjct: 234 AETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPRE 293
Query: 289 XXXXXXXXXXXXXXXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDM 348
G IP + + + L + L N ++GSIP IG L LE +
Sbjct: 294 IGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMI 353
Query: 349 SSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSIPSE 408
S NK G IP TI + ++L+ L L NQ+SG IPS G GSIP
Sbjct: 354 SDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPG 413
Query: 409 LMNCFXXXXXXXXXXXXTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRL 468
L +C TG IPS + L L +L L N +SG P + +R RL
Sbjct: 414 LADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRL 473
Query: 469 LTYVNHQFNRLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLD 518
FNR++G+IP IG L K++ G VP EIG+CS L + LSNNSL+
Sbjct: 474 ------GFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLE 527
Query: 519 GTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIM 553
G++P + + L+ LD+S N G +P + R++
Sbjct: 528 GSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLV 562
|
|
| TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 2.9e-66, Sum P(3) = 2.9e-66
Identities = 154/507 (30%), Positives = 242/507 (47%)
Query: 52 NSREKASNHSDHCKWAGIVCNLNGS---IIRISLSGVNGIRGKLDQFNFSCFPNLESFRI 108
N R SN S C W G++C+ S ++ ++LS + + GKL + +L+ +
Sbjct: 47 NLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMV-LSGKLSP-SIGGLVHLKQLDL 104
Query: 109 WYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPST 168
Y+ +SG IP EIG S L+IL L++N G IP ++G L +L L + + ++G +P
Sbjct: 105 SYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVE 164
Query: 169 LGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDL 228
+G+L LS L SN++ G +P ++G+L +LT+ + N I+G +P + G L + L
Sbjct: 165 IGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGL 224
Query: 229 SGNKLNGPIASTIGXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXX 288
+ N+L+G + IG + SG +P+EI GPIP
Sbjct: 225 AQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKE 284
Query: 289 XXXXXXXXXXXXXXXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDM 348
G IP + +L+ + N + G IPL +GN+E LE + +
Sbjct: 285 LGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYL 344
Query: 349 SSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSIPSE 408
N+L G IP+ + L NL LDLS+N L+GPIP F + G+IP +
Sbjct: 345 FENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPK 404
Query: 409 LMNCFXXXXXXXXXXXXTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRL 468
L +GRIPS + S + L+L N +SG P K ++ RL
Sbjct: 405 LGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRL 464
Query: 469 L--TYVNHQFNRLSGQIPMTIG--GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE 524
V + L Q+ +T G ++ GS+P E+GNCS L + L++N G +P E
Sbjct: 465 ARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPRE 524
Query: 525 MGKIIFLEYLDLSYNNIPGTVP-EFIN 550
+G + L L++S N + G VP E N
Sbjct: 525 IGMLSQLGTLNISSNKLTGEVPSEIFN 551
|
|
| TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
Identities = 161/479 (33%), Positives = 232/479 (48%)
Query: 86 NGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKL 145
N + G L + S +L+ + + +SG IP+EI L++LDLS+N LTG IP L
Sbjct: 322 NRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSL 381
Query: 146 GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205
L L LYL+ ++L G + S++ +LT L L N+L G +P +G L +L + L+
Sbjct: 382 FQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLY 441
Query: 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGXXXXXXXXXXXXKQLSGPLPQEI 265
N+ +G +P++ GN L+E+D GN+L+G I S+IG +L G +P +
Sbjct: 442 ENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASL 501
Query: 266 GXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXXXXXXFGPIPPTLSHLTRLTTLKLF 325
G +G IP G +P +L +L LT +
Sbjct: 502 GNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFS 561
Query: 326 SNQINGSI-PLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPST 384
SN+ NGSI PL G+ L D++ N EG IPL +G TNL L L NQ +G IP T
Sbjct: 562 SNKFNGSISPL-CGSSSYLS-FDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRT 619
Query: 385 FGHXXXXXXXXXXXXXXXGSIPSELMNCFXXXXXXXXXXXXTGRIPSEIRNLSYLHELDL 444
FG G IP EL C +G IP+ + L L EL L
Sbjct: 620 FGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKL 679
Query: 445 SLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGL----------SKLS 494
S N G P + F S+ + L +++ N L+G IP IG L ++LS
Sbjct: 680 SSNKFVGSLPTEIF----SLTNILTLFLDG--NSLNGSIPQEIGNLQALNALNLEENQLS 733
Query: 495 GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEY-LDLSYNNIPGTVPEFINRI 552
G +PS IG S L + LS N+L G IP+E+G++ L+ LDLSYNN G +P I+ +
Sbjct: 734 GPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTL 792
|
|
| TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 4.1e-65, Sum P(2) = 4.1e-65
Identities = 169/511 (33%), Positives = 238/511 (46%)
Query: 56 KASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISG 115
KAS S+ C+W GI CN G + I L V +G L N +L + N++G
Sbjct: 53 KASE-SNPCQWVGIKCNERGQVSEIQLQ-VMDFQGPLPATNLRQIKSLTLLSLTSVNLTG 110
Query: 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175
+IP E+G LS+L++LDL+ N+L+G IP + L L L L+ +NL G IPS LG+L L
Sbjct: 111 SIPKELGDLSELEVLDLADNSLSGEIPVDIFKLKKLKILSLNTNNLEGVIPSELGNLVNL 170
Query: 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ-INGCIPLDFGNLRHLKEVDLSGNKLN 234
L L N L G IP T+G L L + N+ + G +P + GN L + L+ L+
Sbjct: 171 IELTLFDNKLAGEIPRTIGELKNLEIFRAGGNKNLRGELPWEIGNCESLVTLGLAETSLS 230
Query: 235 GPIASTIGXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXX 294
G + ++IG LSGP+P EIG +G IP
Sbjct: 231 GRLPASIGNLKKVQTIALYTSLLSGPIPDEIGNCTELQNLYLYQNSISGSIPVSMGRLKK 290
Query: 295 XXXXXXXXXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354
G IP L L + L N + G+IP GNL NL+ + +S N+L
Sbjct: 291 LQSLLLWQNNLVGKIPTELGTCPELFLVDLSENLLTGNIPRSFGNLPNLQELQLSVNQLS 350
Query: 355 GPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSIPSELMNCFX 414
G IP + + T L +L++ NQ+SG IP G G IP L C
Sbjct: 351 GTIPEELANCTKLTHLEIDNNQISGEIPPLIGKLTSLTMFFAWQNQLTGIIPESLSQCQE 410
Query: 415 XXXXXXXXXXXTGRIPS---EIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTY 471
+G IP+ EIRNL+ L L LS N++SG PP + R RL
Sbjct: 411 LQAIDLSYNNLSGSIPNGIFEIRNLTKL--LLLS-NYLSGFIPPDIGNCTNLYRLRL--- 464
Query: 472 VNHQFNRLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLDGTI 521
NRL+G IP IG L L+ G++P EI C+ L V L +N L G +
Sbjct: 465 ---NGNRLAGNIPAEIGNLKNLNFIDISENRLIGNIPPEISGCTSLEFVDLHSNGLTGGL 521
Query: 522 PLEMGKIIFLEYLDLSYNNIPGTVPEFINRI 552
P + K L+++DLS N++ G++P I +
Sbjct: 522 PGTLPKS--LQFIDLSDNSLTGSLPTGIGSL 550
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.11 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 818 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-95 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-70 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-38 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-15 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-15 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-14 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-14 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-13 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-12 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-11 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-08 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 3e-07 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 3e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-06 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 4e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 7e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 0.001 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 0.003 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (818), Expect = 2e-95
Identities = 206/534 (38%), Positives = 286/534 (53%), Gaps = 45/534 (8%)
Query: 50 WNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIW 109
WN+S +D C W GI CN + ++ I LSG N I GK+ F P +++ +
Sbjct: 51 WNSS-------ADVCLWQGITCNNSSRVVSIDLSGKN-ISGKISSAIFR-LPYIQTINLS 101
Query: 110 YSNISGNIPSEIGALS-KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPST 168
+ +SG IP +I S L+ L+LS+NN TG+IP G++ NL L LS + L+G IP+
Sbjct: 102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND 159
Query: 169 LGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDL 228
+G + L +LDL N LVG IP +L +LT L L L SNQ+ G IP + G ++ LK + L
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219
Query: 229 SGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPST 288
N L+G I IG LT+LN LDL L+GP+P +G L+NL YL L N L+GPIP +
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279
Query: 289 LGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDM 348
+ L L LDLS NSL G IP + L L L LFSN G IP+ + +L L+ + +
Sbjct: 280 IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339
Query: 349 SSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTF---GHLTLLKFLNLNSNKLNGSI 405
SNK G IP +G NL LDLS N L+G IP G+L L L SN L G I
Sbjct: 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI---LFSNSLEGEI 396
Query: 406 PSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG--------MTPPQH 457
P L C SL+ + L +NS +G +PSE L ++ LD+S N + G M Q
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456
Query: 458 FKQKH---------SIRDRLLTYVNHQFNRLSGQIPMTIGGLS----------KLSGSVP 498
S + L ++ N+ SG +P +G LS KLSG +P
Sbjct: 457 LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516
Query: 499 SEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRI 552
E+ +C L+++ LS+N L G IP ++ L LDLS N + G +P+ + +
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 6e-70
Identities = 160/405 (39%), Positives = 221/405 (54%), Gaps = 7/405 (1%)
Query: 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNL 161
+L+ + Y+N+SG IP EIG L+ L LDL +NNLTG IPS LGNL NL L+L ++ L
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272
Query: 162 NGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLR 221
+GPIP ++ L +L LDLS NSL G IP + L L L LFSN G IP+ +L
Sbjct: 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332
Query: 222 HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNL 281
L+ + L NK +G I +G NL LDLS+ L+G +P+ + NL L L N+L
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392
Query: 282 TGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLE 341
G IP +LG SL + L NS G +P + L + L + +N + G I ++
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452
Query: 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401
+L+ + ++ NK G +P + G L LDLS NQ SG +P G L+ L L L+ NKL
Sbjct: 453 SLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511
Query: 402 NGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQK 461
+G IP EL +C L SL LS+N L+G+IP+ + L +LDLS N +SG P +
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571
Query: 462 HSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSG 506
L VN N L G +P T L+ + +V I C G
Sbjct: 572 S------LVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 5e-38
Identities = 92/261 (35%), Positives = 137/261 (52%), Gaps = 25/261 (9%)
Query: 98 SCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLS 157
+ P L+ ++W + SG IP +G + L +LDLS NNLTG IP L + NL +L L
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388
Query: 158 RSNLNGPIPSTLG---------------------HLTRLSI---LDLSSNSLVGPIPFTL 193
++L G IP +LG T+L + LD+S+N+L G I
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448
Query: 194 GHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLS 253
+ L L L N+ G +P FG+ R L+ +DLS N+ +G + +G L+ L L LS
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507
Query: 254 SKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTL 313
+LSG +P E+ + LV L L+ N L+G IP++ + LS LDLS N L G IP L
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567
Query: 314 SHLTRLTTLKLFSNQINGSIP 334
++ L + + N ++GS+P
Sbjct: 568 GNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 7e-16
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 327 NQ-INGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTF 385
NQ + G IP I L +L+ +++S N + G IP ++G +T+L LDLS N +G IP +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Query: 386 GHLTLLKFLNLNSNKLNGSIPSEL 409
G LT L+ LNLN N L+G +P+ L
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-15
Identities = 38/80 (47%), Positives = 53/80 (66%)
Query: 115 GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTR 174
G IP++I L LQ ++LS N++ G IP LG++ +L L LS ++ NG IP +LG LT
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 175 LSILDLSSNSLVGPIPFTLG 194
L IL+L+ NSL G +P LG
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 4e-15
Identities = 107/316 (33%), Positives = 158/316 (50%), Gaps = 15/316 (4%)
Query: 113 ISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGP--IPSTLG 170
I+ N P + L L+ ++ T + +L+ L+ L L + L
Sbjct: 33 INLNFPDSNLESVAVNRLALNLSSNTLLL--LPSSLSRLLSLDLLSPSGISSLDGSENLL 90
Query: 171 HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSG 230
+L L LDL+ N L I L LT LT+L L +N I PL +LKE+DLS
Sbjct: 91 NLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149
Query: 231 NKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLG 290
NK+ + S + +L NL +LDLS LS LP+ + L NL L L+ N +P +
Sbjct: 150 NKI-ESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLS-GNKISDLPPEIE 206
Query: 291 RLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSS 350
L++L +LDLS+NS+ + +LS+L L+ L+L +N++ +P IGNL NLE +D+S+
Sbjct: 207 LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264
Query: 351 NKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELM 410
N++ ++G LTNL LDLS N LS +P LL L L N L EL
Sbjct: 265 NQIS--SISSLGSLTNLRELDLSGNSLSNALPL---IALLLLLLELLLNLLLTLKALELK 319
Query: 411 NCFSLQSLILSNNSLT 426
L + + +N T
Sbjct: 320 LNSILLNNNILSNGET 335
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 2e-14
Identities = 72/262 (27%), Positives = 117/262 (44%), Gaps = 17/262 (6%)
Query: 110 YSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTL 169
N ++PS + L L+ LDLS N+L+ +P L NL+NL L LS + ++ +P +
Sbjct: 148 SDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI 205
Query: 170 GHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLS 229
L+ L LDLS+NS++ + +L +L L+ L+L +N++ +P GNL +L+ +DLS
Sbjct: 206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS 263
Query: 230 GNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTL 289
N+++ S++G LTNL LDLS LS LP L L L + L
Sbjct: 264 NNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKAL----- 316
Query: 290 GRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDM- 348
L+ + S L+ L+ +N L NL +
Sbjct: 317 -----ELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPN 371
Query: 349 SSNKLEGPIPLTIGDLTNLIYL 370
+ L + + L +
Sbjct: 372 AIGSLLDLVKKHVNQLLEKVNY 393
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 4e-14
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 207 NQ-INGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI 265
NQ + G IP D LRHL+ ++LSGN + G I ++G +T+L LDLS +G +P+ +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Query: 266 GYLENLVYLSLNVNNLTGPIPSTLG 290
G L +L L+LN N+L+G +P+ LG
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 37/96 (38%), Positives = 56/96 (58%)
Query: 295 LSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354
+ L L + L G IP +S L L ++ L N I G+IP +G++ +LE +D+S N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 355 GPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL 390
G IP ++G LT+L L+L+ N LSG +P+ G L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-13
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 247 LNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306
++ L L ++ L G +P +I L +L ++L+ N++ G IP +LG +TSL LDLS+NS
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 307 GPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG 338
G IP +L LT L L L N ++G +P +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 5e-13
Identities = 40/130 (30%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 66 WAGIVCNLNGSIIRISLSGVN----GIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEI 121
W+G C + + + + G+ G+RG + + S +L+S + ++I GNIP +
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSL 462
Query: 122 GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLG-HLTRLSILDL 180
G+++ L++LDLS+N+ G+IP LG L +L L L+ ++L+G +P+ LG L + +
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522
Query: 181 SSNSLVGPIP 190
+ N+ + IP
Sbjct: 523 TDNAGLCGIP 532
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 5e-13
Identities = 35/89 (39%), Positives = 52/89 (58%)
Query: 274 LSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSI 333
L L+ L G IP+ + +L L ++LS NS+ G IPP+L +T L L L N NGSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 334 PLGIGNLENLERVDMSSNKLEGPIPLTIG 362
P +G L +L ++++ N L G +P +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 2e-12
Identities = 85/226 (37%), Positives = 120/226 (53%), Gaps = 10/226 (4%)
Query: 228 LSGNKLNGPIASTIGDLTNLNSLDLSSKQL--SGPLPQEIGYLENLVYLSLNVNNLTGPI 285
L+ N + + L+ L SLDL S S + + L L L LN+N L I
Sbjct: 50 LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI 109
Query: 286 PSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLT-RLTTLKLFSNQINGSIPLGIGNLENLE 344
S L LT+L+ LDL +N++ IPP + L L L L N+I S+P + NL NL+
Sbjct: 110 -SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLK 166
Query: 345 RVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGS 404
+D+S N L +P + +L+NL LDLS N++S +P L+ L+ L+L++N +
Sbjct: 167 NLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-E 223
Query: 405 IPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450
+ S L N +L L LSNN L +P I NLS L LDLS N IS
Sbjct: 224 LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-12
Identities = 35/88 (39%), Positives = 53/88 (60%)
Query: 346 VDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI 405
+ + + L G IP I L +L ++LS N + G IP + G +T L+ L+L+ N NGSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 406 PSELMNCFSLQSLILSNNSLTGRIPSEI 433
P L SL+ L L+ NSL+GR+P+ +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 130 LDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPI 189
L L + L G IP+ + L +L + LS +++ G IP +LG +T L +LDLS NS G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 190 PFTLGHLTQLTTLKLFSNQINGCIPLDFG 218
P +LG LT L L L N ++G +P G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-12
Identities = 35/96 (36%), Positives = 54/96 (56%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
L ++ + +SG IP E+ + KL LDLSHN L+G IP+ + L +L L
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFT 192
S++ L+G IP LG++ L +++S N L G +P T
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-11
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI 237
L L + L G IP + L L ++ L N I G IP G++ L+ +DLS N NG I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 238 ASTIGDLTNLNSLDLSSKQLSGPLPQEIG 266
++G LT+L L+L+ LSG +P +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 1e-11
Identities = 81/220 (36%), Positives = 119/220 (54%), Gaps = 9/220 (4%)
Query: 111 SNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLG 170
N + SE+ L+ L LDL +NN+T P +NL EL LS + + +PS L
Sbjct: 102 LNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLR 160
Query: 171 HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSG 230
+L L LDLS N L +P L +L+ L L L N+I+ +P + L L+E+DLS
Sbjct: 161 NLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSN 218
Query: 231 NKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLG 290
N + + S++ +L NL+ L+LS+ +L LP+ IG L NL L L+ N ++ S+LG
Sbjct: 219 NSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLG 274
Query: 291 RLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330
LT+L +LDLS NSL +P L L L L + +
Sbjct: 275 SLTNLRELDLSGNSLSNALP--LIALLLLLLELLLNLLLT 312
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 154 LYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCI 213
L L L G IP+ + L L ++LS NS+ G IP +LG +T L L L N NG I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 214 PLDFGNLRHLKEVDLSGNKLNGPIASTIG 242
P G L L+ ++L+GN L+G + + +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 7e-10
Identities = 33/85 (38%), Positives = 46/85 (54%)
Query: 370 LDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRI 429
L L L G IP+ L L+ +NL+ N + G+IP L + SL+ L LS NS G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 430 PSEIRNLSYLHELDLSLNFISGMTP 454
P + L+ L L+L+ N +SG P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 394 LNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT 453
L L++ L G IP+++ LQS+ LS NS+ G IP + +++ L LDLS N +G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 454 PPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGL 490
P + Q S+R L N LSG++P +GG
Sbjct: 483 P-ESLGQLTSLRILNLNG-----NSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 472 VNHQFNRLSGQIPMTIGGLS----KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGK 527
+ QF+ G+ I GL L G +P++I L ++ LS NS+ G IP +G
Sbjct: 407 ADCQFDSTKGK--WFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS 464
Query: 528 IIFLEYLDLSYNNIPGTVPE 547
I LE LDLSYN+ G++PE
Sbjct: 465 ITSLEVLDLSYNSFNGSIPE 484
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 3e-07
Identities = 25/60 (41%), Positives = 29/60 (48%)
Query: 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL 185
L+ LDLS+N LT L NL L LS +NL P L L LDLS N+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 70/291 (24%), Positives = 107/291 (36%), Gaps = 41/291 (14%)
Query: 220 LRHLKEVDLSGNKLNGP----IASTIGDLTNLNSLDLSSKQLSGPLPQ---EIGYLEN-- 270
L L+ + L GN L +AS + +L L LS + + L
Sbjct: 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81
Query: 271 -LVYLSLNVNNLT----GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTL-----SHLTRLT 320
L L L+ N L G + S L R +SL +L L++N L L L
Sbjct: 82 GLQELDLSDNALGPDGCGVLESLL-RSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140
Query: 321 TLKLFSNQIN--GSIPLGIGNLEN--LERVDMSSNKLEGP-IPLTIGDL---TNLIYLDL 372
L L N++ L N L+ +++++N + I L NL LDL
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200
Query: 373 SLNQL----SGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF-----SLQSLILSNN 423
+ N L + + T L L+ LNL N L + + L + SL +L LS N
Sbjct: 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260
Query: 424 SLT---GRIPSE-IRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLT 470
+T + +E + L ELDL N + + L +
Sbjct: 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELES 311
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 89/316 (28%), Positives = 131/316 (41%), Gaps = 56/316 (17%)
Query: 228 LSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP--I 285
+ +N + + +N L L+ S L L L+ L L +
Sbjct: 28 TTPQSINLNFPDSNLESVAVNRLALNLS--SNTLLLLPSSLSRLLSLDLLSPSGISSLDG 85
Query: 286 PSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLER 345
L L L LDL+ N L I L LT LT+L L +N I PL NL+
Sbjct: 86 SENLLNLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLKE 144
Query: 346 VDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI 405
+D+S NK+E +P + +L NL LDLS N LS +P +L+ L L+L+ NK++ +
Sbjct: 145 LDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DL 201
Query: 406 PSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIR 465
P E+ +L+ L LSNNS+ + S + NL L L+LS N +
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE--------------- 245
Query: 466 DRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEM 525
+P IGN S L + LSNN + + +
Sbjct: 246 ------------------------------DLPESIGNLSNLETLDLSNNQI--SSISSL 273
Query: 526 GKIIFLEYLDLSYNNI 541
G + L LDLS N++
Sbjct: 274 GSLTNLRELDLSGNSL 289
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 479 LSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKI 528
L G IP I L L G++P +G+ + L + LS NS +G+IP +G++
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 529 IFLEYLDLSYNNIPGTVP 546
L L+L+ N++ G VP
Sbjct: 490 TSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 72/289 (24%), Positives = 107/289 (37%), Gaps = 57/289 (19%)
Query: 101 PNLESFRIWYSNISGN----IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
L+ R+ + + + S + L+ L LS N TG IP L +L
Sbjct: 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSL-------- 73
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD 216
L L LDLS N+L L L + ++L+ NG L
Sbjct: 74 ---------LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG---LG 121
Query: 217 FGNLRH-----------LKEVDLSGNKLNG----PIASTIGDLTNLNSLDLSSKQLSGP- 260
LR L+++ L N+L G +A + +L L+L++ +
Sbjct: 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181
Query: 261 ---LPQEIGYLENLVYLSLNVNNLT----GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTL 313
L + + NL L LN N LT + TL L SL L+L N+L L
Sbjct: 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241
Query: 314 -----SHLTRLTTLKLFSNQI--NGSIPL--GIGNLENLERVDMSSNKL 353
S L TL L N I +G+ L + E+L +D+ NK
Sbjct: 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 7e-06
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401
NL+ +D+S+N+L L NL LDLS N L+ P F L L+ L+L+ N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 366 NLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSL 425
NL LDLS N+L+ F L LK L+L+ N L P SL+SL LS N+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 1e-04
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI 209
NL L LS + L L L +LDLS N+L P L L +L L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 1e-04
Identities = 22/60 (36%), Positives = 26/60 (43%)
Query: 174 RLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
L LDLS+N L L L L L N + P F L L+ +DLSGN L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.001
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNL 161
NL+S + + ++ L L++LDLS NNLT P L +L L LS +NL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.001
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 246 NLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNS 304
NL SLDLS+ +L+ +P L NL L L+ NNLT P L SL LDLS N+
Sbjct: 1 NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 305 L 305
L
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 91/330 (27%), Positives = 141/330 (42%), Gaps = 48/330 (14%)
Query: 96 NFSCFPNLESFRIWYSNISG--NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVE 153
+ S NLE+ ++ S+ S +PS I L+KL+ LD+S +P+ + NL
Sbjct: 652 DLSMATNLETLKL--SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI----NLKS 705
Query: 154 LYLSRSNLNGPIPSTLGHLTRL-SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGC 212
LY R NL+G +RL S D+S+N + L + + SN
Sbjct: 706 LY--RLNLSG--------CSRLKSFPDISTN-------ISWLDLDETAIEEFPSN----- 743
Query: 213 IPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLT----NLNSLDLSSKQLSGPLPQEIGYL 268
+ L+ NL L ++ KL + +T +L L LS LP I L
Sbjct: 744 LRLE--NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL 801
Query: 269 ENLVYLSL-NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327
L +L + N NL +P+ + L SL LDLS S P +S T ++ L L
Sbjct: 802 HKLEHLEIENCINLE-TLPTGIN-LESLESLDLSGCSRLRTF-PDIS--TNISDLNLSRT 856
Query: 328 QINGSIPLGIGNLENLERVDMSS-NKLEGPIPLTIGDLTNLIYLDLS-LNQLSGPIPSTF 385
I +P I NL +DM+ N L+ + L I L +L +D S L+ +
Sbjct: 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCGALTEASWNGS 914
Query: 386 GHLTLLKFLNLNSNKLNGSIPSELMNCFSL 415
+ N++S KL ++ +NCF+L
Sbjct: 915 PSEVAMATDNIHS-KLPSTVCINFINCFNL 943
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLE 344
IP L T+L L LS S +P ++ +L +L L + + +P GI NL++L
Sbjct: 650 IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707
Query: 345 RVDMSS-NKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTF--GHLTLLKFLNLNSNKL 401
R+++S ++L+ ++ TN+ +LDL + PS +L L + S KL
Sbjct: 708 RLNLSGCSRLKSFPDIS----TNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKL 762
Query: 402 NGSI----PSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDL 444
+ P M SL L LS+ +PS I+NL L L++
Sbjct: 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809
|
syringae 6; Provisional. Length = 1153 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 818 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.98 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.94 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.85 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.76 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.73 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.68 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.62 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.6 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.59 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.54 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.53 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.49 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.47 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.46 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.46 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.44 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.43 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.43 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.41 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.4 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.39 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.38 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.36 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.34 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.33 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.33 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.32 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 99.31 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.3 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.29 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 99.29 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.27 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.27 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.27 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 99.26 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.26 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.26 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.25 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.25 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 99.25 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 99.24 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.23 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.22 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.21 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.21 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.21 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.21 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.2 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.2 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.19 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.19 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.19 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.18 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.18 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.18 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.17 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.17 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.17 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.17 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.16 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.16 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.16 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.16 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.16 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.16 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.15 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.15 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.15 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.15 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.15 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.14 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.14 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.14 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.14 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.14 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 99.14 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.14 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.14 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.13 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.13 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.13 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.11 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.11 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.11 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.11 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.11 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.1 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 99.1 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.1 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.09 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.09 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.09 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.09 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.09 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.08 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.08 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.08 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.07 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.07 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.07 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.07 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.07 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.07 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.07 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.06 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.06 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.06 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.06 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.06 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.05 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.05 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.05 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.05 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.05 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.05 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.05 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.05 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.05 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.05 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.04 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.04 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.04 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.04 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.04 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.04 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.03 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.03 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.03 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.03 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.03 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.03 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.03 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.03 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.03 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.03 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.02 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.02 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.02 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.02 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.02 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.02 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.02 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.02 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.02 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.02 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.02 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.01 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.01 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.01 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.01 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.01 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.01 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.0 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.0 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.0 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.0 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.0 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.0 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.0 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 98.99 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 98.99 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 98.99 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 98.99 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.99 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 98.99 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 98.98 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 98.98 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 98.98 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 98.97 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 98.97 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 98.97 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 98.97 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 98.97 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 98.97 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 98.97 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 98.97 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 98.96 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 98.96 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 98.96 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 98.96 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 98.96 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.95 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 98.95 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 98.95 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 98.95 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 98.95 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 98.95 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 98.95 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 98.95 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 98.95 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 98.94 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 98.94 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 98.94 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 98.94 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 98.94 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 98.94 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 98.94 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 98.94 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 98.94 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 98.94 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 98.94 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 98.93 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 98.93 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 98.93 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 98.93 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 98.93 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 98.93 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 98.93 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 98.93 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 98.92 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 98.92 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 98.92 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 98.91 | |
| PTZ00284 | 467 | protein kinase; Provisional | 98.91 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 98.91 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 98.91 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 98.91 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 98.91 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 98.91 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 98.91 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 98.91 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 98.91 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 98.91 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 98.91 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 98.9 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 98.9 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 98.9 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 98.9 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 98.9 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 98.9 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 98.9 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.9 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 98.9 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.9 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 98.9 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 98.89 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 98.89 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 98.89 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 98.89 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 98.89 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 98.88 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 98.88 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 98.88 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 98.88 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 98.88 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 98.88 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 98.88 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 98.88 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 98.88 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 98.88 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 98.87 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 98.87 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 98.87 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.87 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 98.87 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.87 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 98.86 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 98.86 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 98.86 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 98.86 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 98.86 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 98.86 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 98.86 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 98.85 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 98.85 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 98.85 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 98.85 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 98.85 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 98.85 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 98.84 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 98.84 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 98.84 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 98.83 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 98.83 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 98.83 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 98.83 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 98.83 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 98.83 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 98.83 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 98.83 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 98.82 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 98.82 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 98.82 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 98.82 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 98.82 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 98.81 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 98.81 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 98.81 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 98.81 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 98.81 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 98.81 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 98.81 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 98.81 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 98.8 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 98.8 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 98.8 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 98.8 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 98.8 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 98.79 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 98.79 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 98.79 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 98.79 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 98.79 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 98.79 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 98.78 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 98.78 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 98.78 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 98.78 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 98.77 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 98.77 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 98.77 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 98.77 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 98.77 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 98.76 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 98.76 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 98.76 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 98.76 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 98.76 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 98.75 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 98.75 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 98.75 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 98.75 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 98.74 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 98.74 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 98.74 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 98.73 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 98.73 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 98.73 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 98.72 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 98.72 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 98.72 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 98.72 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 98.72 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 98.72 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 98.72 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 98.71 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 98.71 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 98.71 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 98.71 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 98.71 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 98.71 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 98.71 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 98.7 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 98.7 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 98.7 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 98.7 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 98.7 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 98.7 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 98.7 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 98.69 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 98.69 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 98.69 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 98.68 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 98.68 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 98.68 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 98.68 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 98.67 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 98.67 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.66 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 98.66 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 98.65 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 98.65 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.64 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 98.64 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 98.62 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 98.61 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.6 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 98.6 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 98.6 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 98.59 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 98.59 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 98.58 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 98.57 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 98.57 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 98.56 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 98.56 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 98.56 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 98.55 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 98.55 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 98.55 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 98.55 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 98.54 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 98.54 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 98.54 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 98.54 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 98.54 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 98.51 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 98.51 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 98.5 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 98.49 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 98.49 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 98.48 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 98.46 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 98.43 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 98.41 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 98.41 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 98.4 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 98.38 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 98.37 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 98.36 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.32 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 98.29 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 98.29 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 98.23 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.23 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 98.2 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 98.18 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.17 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 98.17 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.15 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.12 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 98.11 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 98.11 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.08 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 98.05 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 98.05 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.99 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 97.96 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 97.87 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 97.83 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.79 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 97.78 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.77 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 97.75 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.74 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 97.72 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.7 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.67 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 97.66 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.6 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.57 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 97.54 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.53 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.48 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 97.45 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 97.31 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.25 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 97.24 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.08 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.05 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.01 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.95 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 96.92 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 96.89 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 96.85 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 96.84 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 96.69 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 96.69 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 96.63 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 96.58 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.31 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 96.31 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.29 | |
| TIGR01982 | 437 | UbiB 2-polyprenylphenol 6-hydroxylase. This model | 96.27 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 96.07 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.92 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.88 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 95.88 | |
| KOG1033 | 516 | consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati | 95.77 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.47 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 95.31 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 95.16 | |
| PRK04750 | 537 | ubiB putative ubiquinone biosynthesis protein UbiB | 95.13 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.06 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.84 | |
| smart00090 | 237 | RIO RIO-like kinase. | 94.72 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.71 | |
| PF14531 | 288 | Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_ | 94.4 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 94.39 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 94.32 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 93.96 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 93.71 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.69 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 93.47 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 93.47 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 93.31 | |
| COG0661 | 517 | AarF Predicted unusual protein kinase [General fun | 93.19 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.14 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 92.05 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 91.91 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-80 Score=760.53 Aligned_cols=744 Identities=30% Similarity=0.427 Sum_probs=453.7
Q ss_pred HHHHHHHcCCC------CCCCCCCCCCCCCCCCccceeeCCCCCEEEEEecC--CccccCCCCCCCcCCCCCCcEEEcCC
Q 003465 39 LEREALLNTGW------WNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSG--VNGIRGKLDQFNFSCFPNLESFRIWY 110 (818)
Q Consensus 39 ~~~~~ll~~~~------~~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~--~~g~~~~l~~~~l~~l~~L~~L~L~~ 110 (818)
.|++||+.++. ....+|. ...|||.|.||+|+..++|+.|++.+ +.|.+ ++ .|..+++|++|+|++
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~w~--~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~---~~-~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 29 EELELLLSFKSSINDPLKYLSNWN--SSADVCLWQGITCNNSSRVVSIDLSGKNISGKI---SS-AIFRLPYIQTINLSN 102 (968)
T ss_pred HHHHHHHHHHHhCCCCcccCCCCC--CCCCCCcCcceecCCCCcEEEEEecCCCccccC---Ch-HHhCCCCCCEEECCC
Confidence 68888887532 2346775 46789999999998778999999943 34443 33 388899999999999
Q ss_pred CCCcccCCcccc-CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCC
Q 003465 111 SNISGNIPSEIG-ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPI 189 (818)
Q Consensus 111 n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 189 (818)
|.+.+.+|..+. .+++|++|+|++|++++.+|. +.+++|++|+|++|.+.+.+|..++++++|++|+|++|.+.+.+
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence 988888887654 778888888888877766553 34566666666666666666666666666666666666666666
Q ss_pred ccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCC
Q 003465 190 PFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLE 269 (818)
Q Consensus 190 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 269 (818)
|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..+..++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 66666666666666666666655666666666666666666666555555555566666666666655555555555555
Q ss_pred CCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcC
Q 003465 270 NLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMS 349 (818)
Q Consensus 270 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 349 (818)
+|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 55555555555555555555555555555555555555555555555555555555555544444444444444444444
Q ss_pred CCcccccCCcCcCCCCCCCEEeccCCcC------------------------CCCCCcccCCCCCCCEEEccCCcCcccC
Q 003465 350 SNKLEGPIPLTIGDLTNLIYLDLSLNQL------------------------SGPIPSTFGHLTLLKFLNLNSNKLNGSI 405 (818)
Q Consensus 350 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 405 (818)
+|.+.+.+|..++.+++|+.|++++|++ .+.+|..+..+++|+.|++++|.+++.+
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 4444444444444444444444444444 4444444444455555555555555555
Q ss_pred CccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCC-----------------------hhhhcCcc
Q 003465 406 PSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTP-----------------------PQHFKQKH 462 (818)
Q Consensus 406 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-----------------------~~~~~~~~ 462 (818)
|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+| ..+..+.
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~- 499 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS- 499 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhh-
Confidence 5555555555555555555554444444444444444444444433333 2222222
Q ss_pred ccccccccEEECCCCcCcccCCcccccccC----------CcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCC
Q 003465 463 SIRDRLLTYVNHQFNRLSGQIPMTIGGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLE 532 (818)
Q Consensus 463 ~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~----------l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 532 (818)
.|+.|++++|.++|.+|..+..+.. ++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+
T Consensus 500 -----~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 500 -----ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred -----ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 5777888888888888877665543 6788999999999999999999999999999999999999
Q ss_pred eeeCcCCCCcccCCc-ccccCCCCCcccCcCCCCCCC--CCCCCCCCCCc-ceeeehhhHHHHHHHHHHHHHHHHHHHHh
Q 003465 533 YLDLSYNNIPGTVPE-FINRIMPADLVPMINFSISPT--PSPASPQQEPN-KVMILLISIIFPIAAFVAFLAHGTLFLLR 608 (818)
Q Consensus 533 ~L~ls~N~l~g~ip~-~~~~~~~~~~~~~n~~~~~~~--~~~~~~~~~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 608 (818)
+|++++|+++|.+|. +++.++....+.||+.+|.+. ...++|...++ ....+++++++++++++++ +++++++++
T Consensus 575 ~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 653 (968)
T PLN00113 575 QVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLAL-VAFGFVFIR 653 (968)
T ss_pred EEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999998 778888889999999999322 11114543322 2222222222222222222 222222223
Q ss_pred hhccc-ccccccccccCCCCcccc--cccCcccchHHHHHHHhhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc
Q 003465 609 RKNKR-AELTSGEIKSQDRDAFSI--WNCDGRIAFEEIIRATEDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR 680 (818)
Q Consensus 609 ~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~at~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~ 680 (818)
++++. .+.. ........... ......++++++. ..|.+...+| |.||+|.. .+|..||||++....
T Consensus 654 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~ 727 (968)
T PLN00113 654 GRNNLELKRV---ENEDGTWELQFFDSKVSKSITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVN 727 (968)
T ss_pred hhhccccccc---ccccccccccccccccchhhhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCc
Confidence 22211 1110 00000000000 0111234555554 4567777787 89999996 679999999765432
Q ss_pred cchhhhhHhhh-----------------------------------------------------------c---------
Q 003465 681 SAFFKSFQNEA-----------------------------------------------------------H--------- 692 (818)
Q Consensus 681 ~~~~~~f~~E~-----------------------------------------------------------h--------- 692 (818)
....+ +.+.+ |
T Consensus 728 ~~~~~-~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH 806 (968)
T PLN00113 728 SIPSS-EIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVV 806 (968)
T ss_pred cccHH-HHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeec
Confidence 11111 01111 3
Q ss_pred c---ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC--------------------------CCcc--
Q 003465 693 V---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK--------------------------HPQE-- 741 (818)
Q Consensus 693 ~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~--------------------------~~~~-- 741 (818)
+ |+||++|+++++|+. ||.++....+ ...+||.+|+|||. .|.+
T Consensus 807 ~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~ 881 (968)
T PLN00113 807 GNLSPEKIIIDGKDEPHLR-LSLPGLLCTD----TKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAE 881 (968)
T ss_pred CCCCHHhEEECCCCceEEE-eccccccccC----CCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcc
Confidence 1 889999999999986 7776544222 23468999999991 1110
Q ss_pred -----hHHHHhcccCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCc
Q 003465 742 -----ILSLFSSTSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYL 810 (818)
Q Consensus 742 -----~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~ 810 (818)
.++.|++..........++|+.+.... ....+++..+.++|.+||+.+|++||+|.||+++|+++...
T Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~ 954 (968)
T PLN00113 882 FGVHGSIVEWARYCYSDCHLDMWIDPSIRGDV-SVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRS 954 (968)
T ss_pred cCCCCcHHHHHHHhcCccchhheeCccccCCC-CccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhcc
Confidence 122333322222234456677665443 33556778899999999999999999999999999998543
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-52 Score=509.19 Aligned_cols=463 Identities=37% Similarity=0.567 Sum_probs=396.0
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCC-CCCCCCcEEECcCCCCCCCCccccCCCCCCCEEE
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 179 (818)
.+++.|+|++|.+.+.++..|..+++|++|+|++|++.+.+|..+ ..+++|++|+|++|.+++.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 478999999999999999999999999999999999998888765 4999999999999999988885 5689999999
Q ss_pred ccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC
Q 003465 180 LSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 180 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
|++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|+.|++++|.+++
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccC
Q 003465 260 PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGN 339 (818)
Q Consensus 260 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 339 (818)
.+|..+..+++|++|++++|.+++.+|..++++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 003465 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLI 419 (818)
Q Consensus 340 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 419 (818)
+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999888877766655555555555
Q ss_pred cccCcC------------------------cccCCccccCCCCCCEEECcCCcCCccCChhhhcCcc-------------
Q 003465 420 LSNNSL------------------------TGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKH------------- 462 (818)
Q Consensus 420 Ls~N~l------------------------~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~------------- 462 (818)
+++|.+ ++.+|..+.+++.|+.|++++|.+++.+|..+.....
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 555544 4444444555555555555555555554443222110
Q ss_pred ----ccccccccEEECCCCcCcccCCcccccccC----------CcccCChhhcCCcCCCEEECCCCcCccCCcccccCC
Q 003465 463 ----SIRDRLLTYVNHQFNRLSGQIPMTIGGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKI 528 (818)
Q Consensus 463 ----~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~----------l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 528 (818)
......|+.|++++|++++.+|..+..+.. ++|.+|..++++++|+.|+|++|.++|.+|..++.+
T Consensus 467 ~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred ecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 001124667777777777777766654433 568899999999999999999999999999999999
Q ss_pred CCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCCC
Q 003465 529 IFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFSI 565 (818)
Q Consensus 529 ~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~~ 565 (818)
++|+.|||++|+++|.+|. .....+....+.+|+..+
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999998 334455666667776554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=328.28 Aligned_cols=323 Identities=26% Similarity=0.262 Sum_probs=181.4
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccC
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 207 (818)
+.||+++|.+....+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 44555555555444455555555555555555554 44544333444555555555555444445555555555555555
Q ss_pred cCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCc
Q 003465 208 QINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPS 287 (818)
Q Consensus 208 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 287 (818)
.|+...-..|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...+..|..+++|+.|+|..|++.-.---
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 55544334444445555555555555555555555555555666666665544444555566666666666655522233
Q ss_pred ccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCC
Q 003465 288 TLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNL 367 (818)
Q Consensus 288 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 367 (818)
.|.++++|+.|.|..|++...-...|..+.++++|+|..|++...-..++.++++|+.|++|+|.|...-+..+..+++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 45556666666666666655555555566666666666666655444555566666666666666655555555566666
Q ss_pred CEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCc---cccCCCCCCEEEC
Q 003465 368 IYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPS---EIRNLSYLHELDL 444 (818)
Q Consensus 368 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L 444 (818)
+.|+|++|+++...+..|..+..|++|+|++|++...-...|..+++|+.|||++|.+++.+.+ .|..+++|+.|++
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 6666666666655555666666666666666666544444555566666666666666554432 2445566666666
Q ss_pred cCCcCCc
Q 003465 445 SLNFISG 451 (818)
Q Consensus 445 s~N~l~~ 451 (818)
.+|++..
T Consensus 400 ~gNqlk~ 406 (873)
T KOG4194|consen 400 TGNQLKS 406 (873)
T ss_pred cCceeee
Confidence 6665543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=325.43 Aligned_cols=358 Identities=25% Similarity=0.223 Sum_probs=325.4
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
.-++|++++|.+....+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4678999999999999999999999999999999999 788876777789999999999998888889999999999999
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPL 261 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 261 (818)
.|.++......|..-.++++|+|++|+|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|+|...-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 99999766667888889999999999999888889999999999999999999888889999999999999999998544
Q ss_pred CccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCC
Q 003465 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLE 341 (818)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 341 (818)
--.|..+++|+.|.|..|.+.......|..+.++++|+|+.|++...-..++.+++.|+.|+|++|.|...-+..+.-++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 55688899999999999999977777889999999999999999988888899999999999999999988888899999
Q ss_pred CCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCc---cccCCCCCCEE
Q 003465 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPS---ELMNCFSLQSL 418 (818)
Q Consensus 342 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L 418 (818)
+|+.|+|++|+++...+..|..+..|+.|+|++|.++..-...|..+++|++|||++|.++..+.+ .|..+++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 999999999999988889999999999999999999977777899999999999999999876654 47789999999
Q ss_pred ecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcC
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQ 460 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 460 (818)
++.+|++....-..|..++.|++|||.+|.|..+-|..+..+
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 999999996555689999999999999999998877766543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=314.88 Aligned_cols=426 Identities=29% Similarity=0.437 Sum_probs=325.9
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 176 (818)
+.++.-+.+|++++|++. ..|++++.+..++.|+.++|++. .+|+.++.+.+|+.|+.++|.+. .+|+.++.+..|+
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLE 140 (565)
T ss_pred hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhh
Confidence 778888899999999888 67778999999999999999988 78888899999999999999988 6788888888999
Q ss_pred EEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC
Q 003465 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256 (818)
Q Consensus 177 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 256 (818)
.|+..+|+++ ..|..+..+.+|..|++.+|.+....|..+. ++.|++||...|.++ .+|+.++.+.+|+.|++..|+
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence 9999999888 5677888888899999999988855555444 888999998888875 678888889999999999998
Q ss_pred CCCCCCccccCCCCCcEEEccccccCCcCCccc-CCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCc
Q 003465 257 LSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTL-GRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335 (818)
Q Consensus 257 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 335 (818)
+. .+| .|..+..|++|+++.|++. .+|... .++++|..||+.+|++. ..|..++.+.+|++||+++|.++ .+|.
T Consensus 218 i~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~ 292 (565)
T KOG0472|consen 218 IR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPY 292 (565)
T ss_pred cc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCc
Confidence 87 556 6888888999999988888 455544 47888999999999987 57788888888999999999888 5777
Q ss_pred cccCCCCCCEEEcCCCccccc--------------------------------------CCc---CcCCCCCCCEEeccC
Q 003465 336 GIGNLENLERVDMSSNKLEGP--------------------------------------IPL---TIGDLTNLIYLDLSL 374 (818)
Q Consensus 336 ~l~~l~~L~~L~Ls~n~l~~~--------------------------------------~~~---~l~~l~~L~~L~Ls~ 374 (818)
.++++ .|+.|-+.+|.+... .+. ....+.+.+.|++++
T Consensus 293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 88888 888888888876310 000 111234567777777
Q ss_pred CcCCCCCCcccCCC--CCCCEEEccCCcCcccCCccccCCCCCCE-EecccCcCcccCCccccCCCCCCEEECcCCcCCc
Q 003465 375 NQLSGPIPSTFGHL--TLLKFLNLNSNKLNGSIPSELMNCFSLQS-LILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG 451 (818)
Q Consensus 375 n~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 451 (818)
-+++......|..- .-....+++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|+|++|.+.+
T Consensus 372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~ 449 (565)
T KOG0472|consen 372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLND 449 (565)
T ss_pred cccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhhh
Confidence 77774333333221 22667888888887 56766655555444 34444444 4777788888888888888887765
Q ss_pred cCChhhhcCccccccccccEEECCCCcCcccCCcccccccC---------CcccCCh-hhcCCcCCCEEECCCCcCccCC
Q 003465 452 MTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSK---------LSGSVPS-EIGNCSGLLNVTLSNNSLDGTI 521 (818)
Q Consensus 452 ~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~---------l~g~ip~-~~~~l~~L~~L~Ls~N~l~~~~ 521 (818)
. |.+.+... .|+.+|+|+|+|. .+|..+..... --|.++. .+.+|.+|..|||.+|.+. .|
T Consensus 450 L-P~e~~~lv------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~I 520 (565)
T KOG0472|consen 450 L-PEEMGSLV------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QI 520 (565)
T ss_pred c-chhhhhhh------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hC
Confidence 4 66666665 6888888888775 44543322211 1234444 4999999999999999996 78
Q ss_pred cccccCCCCCCeeeCcCCCCcccCCc
Q 003465 522 PLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 522 p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
|..+++|++|++|++++|+|. .|.
T Consensus 521 Pp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred ChhhccccceeEEEecCCccC--CCH
Confidence 899999999999999999998 454
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=309.99 Aligned_cols=344 Identities=30% Similarity=0.398 Sum_probs=292.7
Q ss_pred CCCCCcEEEcCCCCCc-ccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCE
Q 003465 99 CFPNLESFRIWYSNIS-GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 177 (818)
-||.++-.|+++|.++ +.+|.....|+.++.|.|...++. .+|+.++.|.+|++|.+++|++. .+-..++.|+.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 3667888899999998 568999999999999999999998 78999999999999999999987 56667889999999
Q ss_pred EEccCCCCCC-CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC
Q 003465 178 LDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256 (818)
Q Consensus 178 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 256 (818)
+++..|++.. -+|..+-++..|..|||++|++. ..|..+...+++-+|+|++|+|..+.-..+.+++.|-.|||++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 9999998753 47888889999999999999998 678889999999999999999986666677889999999999999
Q ss_pred CCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC-CCCchhhcCCCCCCeeeccCCcCCCCcCc
Q 003465 257 LSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF-GPIPPTLSHLTRLTTLKLFSNQINGSIPL 335 (818)
Q Consensus 257 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 335 (818)
+. .+|..+..+..|++|.|++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. .+|.
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 88 67778888999999999999887544445566788888888887654 347888888899999999999887 7888
Q ss_pred cccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCc-ccCCccccCCCC
Q 003465 336 GIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN-GSIPSELMNCFS 414 (818)
Q Consensus 336 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~ 414 (818)
.+.++++|+.|+||+|+++ .+....+...+|+.|++|.|+++ .+|+.+..+++|+.|++.+|+++ .-+|+.++.+.+
T Consensus 240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 8888999999999999987 44455666778899999999988 67888889999999999999876 347888888999
Q ss_pred CCEEecccCcCcccCCccccCCCCCCEEECcCCcCC
Q 003465 415 LQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450 (818)
Q Consensus 415 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 450 (818)
|+.+..++|.+. .+|++++.|..|+.|.|+.|.+-
T Consensus 318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred hHHHHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence 999999988887 78888999998988888888764
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-37 Score=305.36 Aligned_cols=390 Identities=30% Similarity=0.427 Sum_probs=302.6
Q ss_pred CCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCC
Q 003465 92 LDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGH 171 (818)
Q Consensus 92 l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 171 (818)
+++. +..+..+..|+.++|++. .+|..++.+.+|+.|+.++|.+. .+|++++.+..|+.|+..+|+++ ..|..+.+
T Consensus 83 lp~a-ig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~ 158 (565)
T KOG0472|consen 83 LPAA-IGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN 158 (565)
T ss_pred CCHH-HHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHH
Confidence 3554 888889999999999988 78888999999999999999998 67888999999999999999998 77888889
Q ss_pred CCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEE
Q 003465 172 LTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLD 251 (818)
Q Consensus 172 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 251 (818)
+.+|..|++.+|++....|.. -+++.|++||...|-++ .+|..++.+.+|.-|++..|++. ..| .|..+..|++|+
T Consensus 159 ~~~l~~l~~~~n~l~~l~~~~-i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh 234 (565)
T KOG0472|consen 159 LSKLSKLDLEGNKLKALPENH-IAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELH 234 (565)
T ss_pred HHHHHHhhccccchhhCCHHH-HHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHH
Confidence 999999999999988544444 44889999999988886 67888999999999999999987 344 788888888888
Q ss_pred ccCCCCCCCCCcccc-CCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 252 LSSKQLSGPLPQEIG-YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 252 L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
++.|++. .+|.+.. .+++|..|||..|+++ ..|+.+.-+.+|++||+++|.+++ .|..++++ .|+.|-+.+|.+.
T Consensus 235 ~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 235 VGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchH
Confidence 8888887 5555554 7888888888888888 678888888888888888888874 56678888 8888888888653
Q ss_pred C-------------------------------------CcCc-c---ccCCCCC--------------------------
Q 003465 331 G-------------------------------------SIPL-G---IGNLENL-------------------------- 343 (818)
Q Consensus 331 ~-------------------------------------~~~~-~---l~~l~~L-------------------------- 343 (818)
. ..+. . ...+.+.
T Consensus 311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~V 390 (565)
T KOG0472|consen 311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIV 390 (565)
T ss_pred HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcce
Confidence 1 0000 0 0011223
Q ss_pred CEEEcCCCcccccCCcCcCCCCCCCE-EeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccc
Q 003465 344 ERVDMSSNKLEGPIPLTIGDLTNLIY-LDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSN 422 (818)
Q Consensus 344 ~~L~Ls~n~l~~~~~~~l~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 422 (818)
+.++++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..+..+++|..|+|++|.+. .+|..++.+..|+.|+++.
T Consensus 391 t~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 391 TSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred EEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence 34455555554 34444444444333 33444443 366777788888999999888887 6788888888899999999
Q ss_pred CcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhc
Q 003465 423 NSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIG 502 (818)
Q Consensus 423 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~ 502 (818)
|+|. .+|..+..+..++.+-.++|++....|..+..+. +|+.||+.+|.+. .||..+|
T Consensus 468 NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~------nL~tLDL~nNdlq---------------~IPp~Lg 525 (565)
T KOG0472|consen 468 NRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR------NLTTLDLQNNDLQ---------------QIPPILG 525 (565)
T ss_pred cccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh------hcceeccCCCchh---------------hCChhhc
Confidence 9887 6787777777777777778888877777677766 8999999999987 4566899
Q ss_pred CCcCCCEEECCCCcCc
Q 003465 503 NCSGLLNVTLSNNSLD 518 (818)
Q Consensus 503 ~l~~L~~L~Ls~N~l~ 518 (818)
+|++|+.|++++|.|.
T Consensus 526 nmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 526 NMTNLRHLELDGNPFR 541 (565)
T ss_pred cccceeEEEecCCccC
Confidence 9999999999999998
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-34 Score=299.00 Aligned_cols=367 Identities=31% Similarity=0.434 Sum_probs=318.1
Q ss_pred CEEEEEec--CCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcE
Q 003465 76 SIIRISLS--GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVE 153 (818)
Q Consensus 76 ~v~~l~l~--~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 153 (818)
-|+++++. ..+|.. -|.+...++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..|+.||.
T Consensus 8 FVrGvDfsgNDFsg~~---FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDR---FPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred eeecccccCCcCCCCc---CchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 36667762 344433 2344778899999999998887 78999999999999999999998 56677899999999
Q ss_pred EECcCCCCCC-CCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCc
Q 003465 154 LYLSRSNLNG-PIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNK 232 (818)
Q Consensus 154 L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 232 (818)
+++..|++.. -+|..+..|.-|.+|||++|++. ..|..+..-+++-+|+|++|+|..+.-..|-+++.|-.|||++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 9999999864 37888999999999999999998 789999999999999999999996655667899999999999999
Q ss_pred CCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC-CcCCcccCCCCCCCEEEccCCcCCCCCch
Q 003465 233 LNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT-GPIPSTLGRLTSLSDLDLSHNSLFGPIPP 311 (818)
Q Consensus 233 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 311 (818)
+. .+|+.+..+..|++|+|++|.+...-...+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|+|.|++. ..|+
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 97 57778899999999999999876543344556788899999987654 358889999999999999999997 7899
Q ss_pred hhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCC-CCCcccCCCCC
Q 003465 312 TLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSG-PIPSTFGHLTL 390 (818)
Q Consensus 312 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~ 390 (818)
.+.++++|+.|+|++|+++ .+....+...+|++|++|.|+++ .+|..++.++.|+.|.+.+|+++- .+|+.++.+.+
T Consensus 240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 9999999999999999998 45556677889999999999998 789999999999999999998863 47899999999
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCC
Q 003465 391 LKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454 (818)
Q Consensus 391 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 454 (818)
|+++..++|.+. .+|+.+..|..|+.|.|+.|.+. .+|+.+.-++.|+.||+..|+---..|
T Consensus 318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999997 89999999999999999999987 789999999999999999997544433
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-32 Score=300.61 Aligned_cols=397 Identities=32% Similarity=0.369 Sum_probs=204.7
Q ss_pred CcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccC
Q 003465 103 LESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182 (818)
Q Consensus 103 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (818)
|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|.|.+|.+. .+|..+..+++|++|++++
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence 555555554443 34445555555555555555555 34455555555555555555554 4555555555555555555
Q ss_pred CCCCCCCccCCCCCCC-------------------CcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQ-------------------LTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGD 243 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~-------------------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 243 (818)
|.+. .+|..+..++. ++.+++..|.+.+.++.++..++. .|+|.+|.+.. -.+.+
T Consensus 124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~ 197 (1081)
T KOG0618|consen 124 NHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSN 197 (1081)
T ss_pred hccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhh
Confidence 5554 33433433333 455555555555555555555554 56777766541 22334
Q ss_pred CCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeee
Q 003465 244 LTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLK 323 (818)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 323 (818)
+.+|+.|....|++... .-..++|+.|+.++|.++...+. ....+|+++++++|++.+ +|++++.+.+|+.++
T Consensus 198 ~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALN 270 (1081)
T ss_pred ccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEec
Confidence 44444444444443311 01123344444444444421111 122344455555554442 334444455555555
Q ss_pred ccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcc-------------------
Q 003465 324 LFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPST------------------- 384 (818)
Q Consensus 324 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~------------------- 384 (818)
..+|++. .+|..+...++|+.|.+.+|.+. .+|.....+++|+.|+|..|++....+..
T Consensus 271 ~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 5555442 34444444444444444444443 23333444444444444444443221111
Q ss_pred ------cCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhh
Q 003465 385 ------FGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHF 458 (818)
Q Consensus 385 ------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 458 (818)
-..++.|+.|++.+|.++...-..+.+.++|+.|+|++|++.......+.+++.|++|+||+|+++.. |..+.
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva 427 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVA 427 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHH
Confidence 12234455556666666555444555556666666666666533333445566666666666665543 34444
Q ss_pred cCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcC
Q 003465 459 KQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSY 538 (818)
Q Consensus 459 ~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 538 (818)
.+. .|.+|-..+|++. ..| .+..+++|+.+|+|.|+|+...-..--..+.|++||+|+
T Consensus 428 ~~~------~L~tL~ahsN~l~---------------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 428 NLG------RLHTLRAHSNQLL---------------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSG 485 (1081)
T ss_pred hhh------hhHHHhhcCCcee---------------ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccC
Confidence 444 4555555555554 445 788899999999999999865433333338999999999
Q ss_pred CC
Q 003465 539 NN 540 (818)
Q Consensus 539 N~ 540 (818)
|.
T Consensus 486 N~ 487 (1081)
T KOG0618|consen 486 NT 487 (1081)
T ss_pred Cc
Confidence 97
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-32 Score=298.95 Aligned_cols=404 Identities=27% Similarity=0.342 Sum_probs=286.1
Q ss_pred CcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCC-
Q 003465 96 NFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTR- 174 (818)
Q Consensus 96 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~- 174 (818)
.+..+++|+.|+++.|.+. ..|.+.+++.+|++|+|.+|.+. ..|.++..+.+|++|++++|.+. .+|..+..+..
T Consensus 63 ~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~ 139 (1081)
T KOG0618|consen 63 QITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAE 139 (1081)
T ss_pred hhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHH
Confidence 3778899999999999988 56788999999999999999988 78999999999999999999987 56655544443
Q ss_pred ------------------CCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCC
Q 003465 175 ------------------LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236 (818)
Q Consensus 175 ------------------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 236 (818)
++.+++..|.+.+.++..+..++. .|+|.+|.+.. ..+.++.+|+.|....|++...
T Consensus 140 ~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l 214 (1081)
T KOG0618|consen 140 EELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSEL 214 (1081)
T ss_pred HHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceE
Confidence 455555555566666666666655 69999999872 3456677777777777766531
Q ss_pred CCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCC
Q 003465 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHL 316 (818)
Q Consensus 237 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 316 (818)
. -.-++|+.|+.+.|.++...+ -....+|+++++++|+++ .+|+|++.+.+|+.++..+|.+. .+|..+...
T Consensus 215 ~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~ 286 (1081)
T KOG0618|consen 215 E----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRI 286 (1081)
T ss_pred E----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhh
Confidence 1 122455566666665552211 112345666666666665 34466666666666666666653 344445555
Q ss_pred CCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCccc-------------------------ccCCcCcCCCCCCCEEe
Q 003465 317 TRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE-------------------------GPIPLTIGDLTNLIYLD 371 (818)
Q Consensus 317 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-------------------------~~~~~~l~~l~~L~~L~ 371 (818)
.+|+.|.+..|.+. .+|.....+++|++|+|..|++. ......-..++.|+.|+
T Consensus 287 ~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred hhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 55555555555554 34444455555555555555543 21111112345788999
Q ss_pred ccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCc
Q 003465 372 LSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG 451 (818)
Q Consensus 372 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 451 (818)
+.+|.+++..-..+.++++|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+.+++.|++|...+|++..
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee
Confidence 9999999988788999999999999999998555567888999999999999999 788999999999999999999986
Q ss_pred cCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCC
Q 003465 452 MTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFL 531 (818)
Q Consensus 452 ~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 531 (818)
. | .+.... .|+.+|+|.|+++...-. ..... ++|+.|||++|.-.-.--..|..+.++
T Consensus 445 f-P-e~~~l~------qL~~lDlS~N~L~~~~l~-------------~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 445 F-P-ELAQLP------QLKVLDLSCNNLSEVTLP-------------EALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSL 502 (1081)
T ss_pred c-h-hhhhcC------cceEEecccchhhhhhhh-------------hhCCC-cccceeeccCCcccccchhhhHHhhhh
Confidence 5 4 666666 899999999999843221 12211 789999999998544455667777888
Q ss_pred CeeeCcCC
Q 003465 532 EYLDLSYN 539 (818)
Q Consensus 532 ~~L~ls~N 539 (818)
..+++.-|
T Consensus 503 ~~~~i~~~ 510 (1081)
T KOG0618|consen 503 SQMDITLN 510 (1081)
T ss_pred hheecccC
Confidence 88888766
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-25 Score=270.48 Aligned_cols=357 Identities=25% Similarity=0.291 Sum_probs=282.3
Q ss_pred CCEEEEEec--CCccccCCCCCCCcCCCCCCcEEEcCCCC------CcccCCccccCCC-cCceecccCcccccCCCCCC
Q 003465 75 GSIIRISLS--GVNGIRGKLDQFNFSCFPNLESFRIWYSN------ISGNIPSEIGALS-KLQILDLSHNNLTGTIPSKL 145 (818)
Q Consensus 75 ~~v~~l~l~--~~~g~~~~l~~~~l~~l~~L~~L~L~~n~------~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~ 145 (818)
..|.++.+. ... .+ .++...|.++++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..|
T Consensus 532 ~~v~~i~l~~~~~~-~~-~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f 608 (1153)
T PLN03210 532 KKVLGITLDIDEID-EL-HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF 608 (1153)
T ss_pred ceeeEEEeccCccc-ee-eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC
Confidence 457766652 111 11 2244558999999999997653 3345777787775 6999999999887 678777
Q ss_pred CCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCE
Q 003465 146 GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKE 225 (818)
Q Consensus 146 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 225 (818)
...+|++|++++|++. .++..+..+++|+.|+|+++.....+| .+..+++|++|++++|.....+|..+.++++|+.
T Consensus 609 -~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 609 -RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred -CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 5789999999999987 678888999999999999987666676 4888999999999999877788999999999999
Q ss_pred EEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcC
Q 003465 226 VDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305 (818)
Q Consensus 226 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 305 (818)
|++++|.....+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.++ .+|..+ .+++|+.|++.++..
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKS 759 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccch
Confidence 9999986555677655 7899999999999766555543 468999999999987 566654 578899998877442
Q ss_pred C-------CCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCC
Q 003465 306 F-------GPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLS 378 (818)
Q Consensus 306 ~-------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 378 (818)
. ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|...
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 1 1122223345789999999998888899999999999999999986655677665 7889999999998665
Q ss_pred CCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCc
Q 003465 379 GPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNF 448 (818)
Q Consensus 379 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 448 (818)
..+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 839 ~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 839 RTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 555543 367999999999997 678889999999999999966544678788889999999999885
|
syringae 6; Provisional |
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-27 Score=249.92 Aligned_cols=172 Identities=26% Similarity=0.368 Sum_probs=141.2
Q ss_pred CcccchHHHHHHHhhhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh-------------------
Q 003465 635 DGRIAFEEIIRATEDLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA------------------- 691 (818)
Q Consensus 635 ~~~~~~~~l~~at~~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~------------------- 691 (818)
.+.|+|+++.+||++|+.++.+| |.||+|.+++|..||||++.....+..++|.+|+
T Consensus 62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~ 141 (361)
T KOG1187|consen 62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCL 141 (361)
T ss_pred cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEe
Confidence 35699999999999999999998 8999999999999999977665432156699998
Q ss_pred ----------------------------------------------------------cc---ccccccCCCCccccccc
Q 003465 692 ----------------------------------------------------------HV---FNNILLNSEFEAFFGNF 710 (818)
Q Consensus 692 ----------------------------------------------------------h~---~~NILLd~~~~~ki~DF 710 (818)
|+ ++|||||++|+|||+||
T Consensus 142 e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDF 221 (361)
T KOG1187|consen 142 EGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDF 221 (361)
T ss_pred cCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCc
Confidence 11 79999999999999999
Q ss_pred ccceeccC-CCCCccccccccceeCCC--------------------------CCCcc--------hHHHHhcccCCCcc
Q 003465 711 GVARLLNS-DSSNRTLIAGTYRYIAPA--------------------------KHPQE--------ILSLFSSTSDPHIT 755 (818)
Q Consensus 711 Gla~~~~~-~~~~~~~~~gt~gy~aPE--------------------------~~~~~--------~l~~~~~~~~~~~~ 755 (818)
|||+.... ..+..+...||+||+||| +++.+ .++.|++....++.
T Consensus 222 GLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~ 301 (361)
T KOG1187|consen 222 GLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGK 301 (361)
T ss_pred cCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcc
Confidence 99987765 433322228999999999 22322 48889888887778
Q ss_pred ccceecccCC-CcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRIS-PPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~-~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
+.+++|+++. ... .+.+++.++.++|++|++.+|++||+|.||+++|+.+.
T Consensus 302 ~~eiiD~~l~~~~~--~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~ 353 (361)
T KOG1187|consen 302 LREIVDPRLKEGEY--PDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGIL 353 (361)
T ss_pred hhheeCCCccCCCC--ChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhc
Confidence 9999999997 333 12278999999999999999999999999999997764
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=256.95 Aligned_cols=340 Identities=23% Similarity=0.217 Sum_probs=267.6
Q ss_pred CccccCCCcCceecccCcc------cccCCCCCCCCCC-CCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCc
Q 003465 118 PSEIGALSKLQILDLSHNN------LTGTIPSKLGNLN-NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP 190 (818)
Q Consensus 118 ~~~~~~l~~L~~L~Ls~n~------l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 190 (818)
+.+|.+|++|+.|.+.++. +...+|..|..++ +|+.|++.++.+. .+|..| ...+|+.|++++|.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 4568899999999997654 3334677777764 6999999999887 778777 5789999999999987 577
Q ss_pred cCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCC
Q 003465 191 FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLEN 270 (818)
Q Consensus 191 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 270 (818)
..+..+++|+.|+|+++.....+| .++.+++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ .+++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 788899999999999887555666 48889999999999988777889999999999999999986555777655 7899
Q ss_pred CcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCC-------CCcCccccCCCCC
Q 003465 271 LVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN-------GSIPLGIGNLENL 343 (818)
Q Consensus 271 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-------~~~~~~l~~l~~L 343 (818)
|++|++++|.....+|.. .++|+.|++++|.+. .+|..+ .+++|+.|++.++... ...+......++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 999999999766566643 468999999999986 456554 5788998988774421 1112223345789
Q ss_pred CEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccC
Q 003465 344 ERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423 (818)
Q Consensus 344 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 423 (818)
+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. ..+|+.|+|++|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n 856 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT 856 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence 999999998888889999999999999999986655677665 7899999999998766566543 468999999999
Q ss_pred cCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCc
Q 003465 424 SLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNR 478 (818)
Q Consensus 424 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~ 478 (818)
.++ .+|.++..+++|+.|++++|+--..+|.....+. .|+.++++++.
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~------~L~~L~l~~C~ 904 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK------HLETVDFSDCG 904 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc------CCCeeecCCCc
Confidence 998 6888999999999999998543334555444444 67777777663
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-26 Score=230.53 Aligned_cols=398 Identities=24% Similarity=0.219 Sum_probs=223.1
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcC-CCCCCCCccccCCCCCCCEEEc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSR-SNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 180 (818)
...+++|..|.|+...+.+|+.+++||.|||++|+|+.+-|.+|.++.+|..|-+.+ |+|+......|.+|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 468899999999988888999999999999999999999999999999988777666 9998665668999999999999
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
.-|++.-.....|..+++|..|.+.+|.+..+.-..|..+..++.+.+..|.+.. ..+++.+... +..+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~-~a~~~---- 217 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADD-LAMNP---- 217 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhH-Hhhch----
Confidence 9999988778889999999999999999986555588899999999998887321 1112211110 00010
Q ss_pred CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEE--Ec-cCCcCCCCCc-hhhcCCCCCCeeeccCCcCCCCcCcc
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL--DL-SHNSLFGPIP-PTLSHLTRLTTLKLFSNQINGSIPLG 336 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L--~L-s~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~ 336 (818)
..++...-..-..+.+.++....+..|... ++.+ .+ +.+...+..| ..|..+++|+.|+|++|++++.-+.+
T Consensus 218 --ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 218 --IETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred --hhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 011111111111122222221111111100 0000 00 1111111111 22444455555555555555444444
Q ss_pred ccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccC-----Cccc--
Q 003465 337 IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI-----PSEL-- 409 (818)
Q Consensus 337 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~-- 409 (818)
|.....++.|.|..|++...-...|.++..|+.|+|++|+|+..-|..|..+.+|.+|+|-.|.+.-.- .+|+
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 455555555555555544333334444555555555555555544555555555555555544432100 0000
Q ss_pred ---------cCCCCCCEEecccCcCcc---cCCccc---------cCCCCCCEEECcCCcCCccCChhhhcCcccccccc
Q 003465 410 ---------MNCFSLQSLILSNNSLTG---RIPSEI---------RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRL 468 (818)
Q Consensus 410 ---------~~l~~L~~L~Ls~N~l~~---~~p~~l---------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~ 468 (818)
.....++.+.++.+.+.. ..|+.. ..++.+.++.=-.|.....+|+.+-. .
T Consensus 374 ~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~--------d 445 (498)
T KOG4237|consen 374 KSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPV--------D 445 (498)
T ss_pred CCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCc--------h
Confidence 111234444444443321 111111 01111211111111111112211110 2
Q ss_pred ccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCC
Q 003465 469 LTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYN 539 (818)
Q Consensus 469 L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 539 (818)
.+.+.+.+|.++ .+|.+ .+.+| .+|+|+|+++-.-...|.+++.|.+|-||||
T Consensus 446 ~telyl~gn~~~---------------~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 446 VTELYLDGNAIT---------------SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hHHHhcccchhc---------------ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 334455555554 34445 56677 8999999999888888999999999999987
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-21 Score=217.68 Aligned_cols=265 Identities=28% Similarity=0.357 Sum_probs=143.6
Q ss_pred cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcc
Q 003465 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 205 (818)
.-..|+|++|.++ .+|..+. .+|+.|++++|+++ .+|.. +++|++|++++|+++. +|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 3445666666665 4454443 25566666666655 34431 3455555555555552 2321 2345555555
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcC
Q 003465 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPI 285 (818)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (818)
+|.++. +|.. .++|+.|++++|+++. +|. .+++|+.|++++|++++ +
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-------------------------LP~---~p~~L~~LdLS~N~L~~-L 317 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLTS-------------------------LPV---LPPGLQELSVSDNQLAS-L 317 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCcccc-------------------------ccc---cccccceeECCCCcccc-C
Confidence 555442 2221 1334444555544442 222 12344555555554442 2
Q ss_pred CcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCC
Q 003465 286 PSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLT 365 (818)
Q Consensus 286 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 365 (818)
|.. ..+|+.|++++|.+.+ +|.. ..+|+.|+|++|++++ +|.. .++|+.|++++|.+.. +|.. ..
T Consensus 318 p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~ 382 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS 382 (788)
T ss_pred CCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cc
Confidence 221 1234455555555542 2221 1355566666666553 3321 2355666666666653 3332 24
Q ss_pred CCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECc
Q 003465 366 NLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLS 445 (818)
Q Consensus 366 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 445 (818)
+|+.|++++|++++ +|.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|+
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 56777777777764 3432 2567788888888773 5543 246778888888887 678888888888888888
Q ss_pred CCcCCccCChhhh
Q 003465 446 LNFISGMTPPQHF 458 (818)
Q Consensus 446 ~N~l~~~~p~~~~ 458 (818)
+|++++..+..+.
T Consensus 454 ~N~Ls~~~~~~L~ 466 (788)
T PRK15387 454 GNPLSERTLQALR 466 (788)
T ss_pred CCCCCchHHHHHH
Confidence 8888887766553
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-23 Score=210.26 Aligned_cols=273 Identities=25% Similarity=0.258 Sum_probs=185.5
Q ss_pred EEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccC-cccccCCCCCCCCCCCCcEEE
Q 003465 77 IIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSH-NNLTGTIPSKLGNLNNLVELY 155 (818)
Q Consensus 77 v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ 155 (818)
.+.|.+. +..+..+|+.+|..+++||.|||+.|+|+..-|++|..+++|..|-+.+ |+|+......|++|..|+.|.
T Consensus 69 tveirLd--qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLD--QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEec--cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4445552 2235566888899999999999999999999999999999988887766 999976667899999999999
Q ss_pred CcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCC------------ccCCccccCCCCC
Q 003465 156 LSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQIN------------GCIPLDFGNLRHL 223 (818)
Q Consensus 156 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------------~~~~~~l~~l~~L 223 (818)
+.-|++.-...+.|..|++|..|.+.+|.+....-..|..+..++++.+..|.+- ...|..++...-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9999999777889999999999999999998555558999999999999988732 1223333433333
Q ss_pred CEEEccCCcCCCCCCCCCCCCCcceEE--Ec-cCCCCCCCCC-ccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEE
Q 003465 224 KEVDLSGNKLNGPIASTIGDLTNLNSL--DL-SSKQLSGPLP-QEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLD 299 (818)
Q Consensus 224 ~~L~l~~n~l~~~~~~~l~~l~~L~~L--~L-~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 299 (818)
.-..+.+.++....+..|... ++.+ .+ +.+...+..| ..|..+++|++|+|++|+++..-+.+|.....++.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred chHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 333344444332222222111 1111 11 1121222222 2355666666666666666666666666666666666
Q ss_pred ccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcc
Q 003465 300 LSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL 353 (818)
Q Consensus 300 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 353 (818)
|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|.+
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 666666555455566666666666666666666666666666666666666554
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=215.73 Aligned_cols=265 Identities=26% Similarity=0.349 Sum_probs=175.3
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
..-..|+|+.+.++ .+|+.+. ++|+.|++++|+++ .+|.. +++|++|++++|+++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 34678999999998 6787776 48999999999999 46653 578999999999998 55643 468999999
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
++|.++. +|.. .++|+.|++++|+++. +|.. +++|+.|++++|++++ +|.. ..+|+.|++++|.+++
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 9999874 4442 3678999999999984 4542 4678999999998875 3332 2457777777777763
Q ss_pred CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCC
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL 340 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 340 (818)
+|.. ..+|++|+|++|+++. +|.. ..+|+.|++++|.+.. +|.. .
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~------------------------ 381 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P------------------------ 381 (788)
T ss_pred cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c------------------------
Confidence 3431 2356666666666663 3332 2345555555555542 2321 1
Q ss_pred CCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003465 341 ENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLIL 420 (818)
Q Consensus 341 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 420 (818)
.+|+.|++++|.+.+ +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 244555555555542 2221 2356666666666653 3432 235666777777776 56666777777777777
Q ss_pred ccCcCcccCCccc
Q 003465 421 SNNSLTGRIPSEI 433 (818)
Q Consensus 421 s~N~l~~~~p~~l 433 (818)
++|++++..+..+
T Consensus 453 s~N~Ls~~~~~~L 465 (788)
T PRK15387 453 EGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCchHHHHH
Confidence 7777776665554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=209.27 Aligned_cols=247 Identities=26% Similarity=0.400 Sum_probs=140.0
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.+...|+++++.++ .+|..+. ++|+.|+|++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 34667777777776 4555443 46777777777777 4555443 46777777777776 3454433 36777777
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
++|.+. .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence 777776 4455443 467777777777663 444442 367777777776663 343322 356666666666663
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCC
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 364 (818)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++.. +|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~-- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP-- 387 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--
Confidence 34322 2456666666666653 343332 46666666666665 3444332 456666666666652 333332
Q ss_pred CCCCEEeccCCcCCCCCCcc----cCCCCCCCEEEccCCcCc
Q 003465 365 TNLIYLDLSLNQLSGPIPST----FGHLTLLKFLNLNSNKLN 402 (818)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~ 402 (818)
.+|+.|++++|++.. +|.. +..++.+..|++.+|.+.
T Consensus 388 ~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 245566666666552 2322 223345555555555554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=208.31 Aligned_cols=265 Identities=26% Similarity=0.452 Sum_probs=206.3
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
.+...|++++++++ .+|..+. ++|+.|+|++|+++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|+|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45789999999888 4666554 58999999999999 5676554 58999999999998 5676554 47999999
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence 999998 5676654 58999999999998 4676664 589999999999985 454443 579999999999984
Q ss_pred CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCC
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL 340 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 340 (818)
+|..+ .++|++|++++|.++. +|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|+++ .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence 55544 3689999999999985 666553 79999999999997 466655 378999999999998 4666554
Q ss_pred CCCCEEEcCCCcccccCCcC----cCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcc
Q 003465 341 ENLERVDMSSNKLEGPIPLT----IGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG 403 (818)
Q Consensus 341 ~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 403 (818)
.+|+.|++++|++. .+|.. ...++.+..|++.+|.++. ..+.+|+.| ++.+.+.|
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~g 446 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQG 446 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccC
Confidence 47999999999998 44543 3456889999999999873 234455555 34444443
|
|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-19 Score=191.84 Aligned_cols=176 Identities=19% Similarity=0.233 Sum_probs=128.1
Q ss_pred cccCcccchHHHHHHHhhhhhh---------cccc----CcEEEEEcC----CCcEEEEEeccccccch-hhhhHhhh--
Q 003465 632 WNCDGRIAFEEIIRATEDLISD---------IALE----LDVTAAFTK----HGCLVAEYGSEQGRSAF-FKSFQNEA-- 691 (818)
Q Consensus 632 ~~~~~~~~~~~l~~at~~f~~~---------~~ig----g~vy~~~~~----~g~~vAvK~~~~~~~~~-~~~f~~E~-- 691 (818)
..+...++|||--+|...|..+ .+|| |+||+|.++ ....||||.++.+..+. .++|..|+
T Consensus 604 k~YiDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsI 683 (996)
T KOG0196|consen 604 KTYIDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASI 683 (996)
T ss_pred eeecCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhh
Confidence 3445678999999999888755 3566 999999973 24689999888775544 45799998
Q ss_pred ----------------------------------------------------------------------cc---ccccc
Q 003465 692 ----------------------------------------------------------------------HV---FNNIL 698 (818)
Q Consensus 692 ----------------------------------------------------------------------h~---~~NIL 698 (818)
|+ +.|||
T Consensus 684 MGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNIL 763 (996)
T KOG0196|consen 684 MGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNIL 763 (996)
T ss_pred cccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhhee
Confidence 22 78999
Q ss_pred cCCCCcccccccccceeccCCCCC-ccccccc--cceeCCC----CCCcchHHHHh-------cccCCC-----ccccce
Q 003465 699 LNSEFEAFFGNFGVARLLNSDSSN-RTLIAGT--YRYIAPA----KHPQEILSLFS-------STSDPH-----ITLTYI 759 (818)
Q Consensus 699 Ld~~~~~ki~DFGla~~~~~~~~~-~~~~~gt--~gy~aPE----~~~~~~l~~~~-------~~~~~~-----~~~~~~ 759 (818)
++.+...|||||||+|.++++... .++..|- +.|.||| |+.+..-+.|+ ...+.+ ..-.++
T Consensus 764 VNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdV 843 (996)
T KOG0196|consen 764 VNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDV 843 (996)
T ss_pred eccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHH
Confidence 999999999999999998776532 2333333 6899999 55554334443 222222 222233
Q ss_pred ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 760 LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 760 ~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.....+...+.+++|+..+.++|+.||++|..+||++.|+|..|+++
T Consensus 844 IkaIe~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDkl 891 (996)
T KOG0196|consen 844 IKAIEQGYRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKL 891 (996)
T ss_pred HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 333333333345789999999999999999999999999999999988
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-19 Score=195.43 Aligned_cols=275 Identities=23% Similarity=0.252 Sum_probs=126.1
Q ss_pred EEcCCCCCc-ccCCccccCCCcCceecccCcccccC----CCCCCCCCCCCcEEECcCCCCCC------CCccccCCCCC
Q 003465 106 FRIWYSNIS-GNIPSEIGALSKLQILDLSHNNLTGT----IPSKLGNLNNLVELYLSRSNLNG------PIPSTLGHLTR 174 (818)
Q Consensus 106 L~L~~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~ 174 (818)
|+|..+.++ ......+..+.+|++|+++++.++.. ++..+...++|++|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555554 22334445555666666666665321 33344555556666666665541 12233445555
Q ss_pred CCEEEccCCCCCCCCccCCCCCCC---CcEEEcccCcCCc----cCCccccCC-CCCCEEEccCCcCCCCCCCCCCCCCc
Q 003465 175 LSILDLSSNSLVGPIPFTLGHLTQ---LTTLKLFSNQING----CIPLDFGNL-RHLKEVDLSGNKLNGPIASTIGDLTN 246 (818)
Q Consensus 175 L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~ 246 (818)
|+.|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.+++....
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------- 155 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------- 155 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH-------
Confidence 666666655554433333333322 5555555555442 111222333 4445555555444421100
Q ss_pred ceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc----CCcccCCCCCCCEEEccCCcCCCC----CchhhcCCCC
Q 003465 247 LNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP----IPSTLGRLTSLSDLDLSHNSLFGP----IPPTLSHLTR 318 (818)
Q Consensus 247 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~ 318 (818)
.++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. +...+..+++
T Consensus 156 -------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 156 -------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred -------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 0111222333444444444444321 112223334555555555544322 1223344555
Q ss_pred CCeeeccCCcCCCCcCcccc-----CCCCCCEEEcCCCcccc----cCCcCcCCCCCCCEEeccCCcCCCC----CCccc
Q 003465 319 LTTLKLFSNQINGSIPLGIG-----NLENLERVDMSSNKLEG----PIPLTIGDLTNLIYLDLSLNQLSGP----IPSTF 385 (818)
Q Consensus 319 L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~ 385 (818)
|++|++++|.+++.....+. ..+.|+.|++++|.++. .+...+..+++|+++++++|.++.. ....+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 55555555555432111111 13566666666666541 1222334456667777777766643 22233
Q ss_pred CCC-CCCCEEEccCCc
Q 003465 386 GHL-TLLKFLNLNSNK 400 (818)
Q Consensus 386 ~~l-~~L~~L~L~~N~ 400 (818)
... +.|++|++.+|.
T Consensus 303 ~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 303 LEPGNELESLWVKDDS 318 (319)
T ss_pred hhcCCchhhcccCCCC
Confidence 333 566777766654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-19 Score=194.62 Aligned_cols=282 Identities=24% Similarity=0.238 Sum_probs=126.8
Q ss_pred ecccCccccc-CCCCCCCCCCCCcEEECcCCCCCCC----CccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 130 LDLSHNNLTG-TIPSKLGNLNNLVELYLSRSNLNGP----IPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 130 L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
|+|..+.+++ ..+..+..+.+|++|+++++.++.. ++..+...++|++|+++++.+.+ .+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------- 70 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------- 70 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH-----------
Confidence 4555555542 2233344455566666666655321 23334444555555555554431 00000
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCC---cceEEEccCCCCCCC----CCccccCC-CCCcEEEc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLT---NLNSLDLSSKQLSGP----LPQEIGYL-ENLVYLSL 276 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L 276 (818)
..++..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+++. +...+..+ ++|+.|++
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 11122333444455555554444332222222222 255555555544421 11222333 45555555
Q ss_pred cccccCCc----CCcccCCCCCCCEEEccCCcCCCC----CchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEc
Q 003465 277 NVNNLTGP----IPSTLGRLTSLSDLDLSHNSLFGP----IPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDM 348 (818)
Q Consensus 277 ~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 348 (818)
++|.+++. ++..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+....
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~------------- 211 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS------------- 211 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH-------------
Confidence 55555421 122333444555555555555421 112223334455555554444321110
Q ss_pred CCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCccc-----CCCCCCCEEEccCCcCcc----cCCccccCCCCCCEEe
Q 003465 349 SSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTF-----GHLTLLKFLNLNSNKLNG----SIPSELMNCFSLQSLI 419 (818)
Q Consensus 349 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~ 419 (818)
.+...+..+++|++|++++|.+++.....+ ...+.|+.|++++|.++. .+...+..+++|+.++
T Consensus 212 -------~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 212 -------ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred -------HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 112233444555555555555543211111 123567777777776651 2223444556777777
Q ss_pred cccCcCccc----CCccccCC-CCCCEEECcCCcC
Q 003465 420 LSNNSLTGR----IPSEIRNL-SYLHELDLSLNFI 449 (818)
Q Consensus 420 Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l 449 (818)
+++|.+... +...+... +.|+.+++.+|++
T Consensus 285 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 777777643 22233333 5777777777653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-19 Score=157.76 Aligned_cols=155 Identities=34% Similarity=0.554 Sum_probs=88.4
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
++.+++.|.||+|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|++|++.-|++. .+|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3445555555555555 44445555555555555555555 45555555555555555555554 455555555555555
Q ss_pred EcccCcCC-ccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEcccccc
Q 003465 203 KLFSNQIN-GCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNL 281 (818)
Q Consensus 203 ~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 281 (818)
||.+|++. ..+|..|..++.|+.|+++.|.+. .+|..++++++|+.|.+..|.+- .+|..++.+..|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 55555553 245555555556666666666554 45555556666666666655554 4555566666666666666666
Q ss_pred C
Q 003465 282 T 282 (818)
Q Consensus 282 ~ 282 (818)
+
T Consensus 186 ~ 186 (264)
T KOG0617|consen 186 T 186 (264)
T ss_pred e
Confidence 5
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.3e-19 Score=156.52 Aligned_cols=166 Identities=30% Similarity=0.511 Sum_probs=150.5
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 176 (818)
+..+.++..|.|++|+++ .+|+.+..+.+|++|++++|+++ .+|.+++.+++|+.|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 566778899999999998 56778999999999999999999 78999999999999999999998 8999999999999
Q ss_pred EEEccCCCCCC-CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCC
Q 003465 177 ILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSK 255 (818)
Q Consensus 177 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 255 (818)
+|||.+|++.. .+|..|..++.|+.|+|++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999999864 57888889999999999999998 78999999999999999999986 67899999999999999999
Q ss_pred CCCCCCCccccCC
Q 003465 256 QLSGPLPQEIGYL 268 (818)
Q Consensus 256 ~l~~~~~~~l~~l 268 (818)
+++ .+|..++.+
T Consensus 184 rl~-vlppel~~l 195 (264)
T KOG0617|consen 184 RLT-VLPPELANL 195 (264)
T ss_pred eee-ecChhhhhh
Confidence 999 556656543
|
|
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=154.51 Aligned_cols=117 Identities=20% Similarity=0.319 Sum_probs=75.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC--------CCC-----cc----hHHHHhc--c---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA--------KHP-----QE----ILSLFSS--T--- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE--------~~~-----~~----~l~~~~~--~--- 749 (818)
++|||+.+|+++.|||||||..+..+.. .+..-+||.+||||| +.+ .| .++-|.. +
T Consensus 344 SkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~ 423 (534)
T KOG3653|consen 344 SKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTD 423 (534)
T ss_pred ccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7899999999999999999998875532 234578999999999 211 11 4556631 1
Q ss_pred ----cCCCc------------ccc----ceecccCCCcCccch--HHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 750 ----SDPHI------------TLT----YILDQRISPPKKQKI--VQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 750 ----~~~~~------------~~~----~~~d~~l~~~~~~~~--~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++. .+. -++..+.++..++.+ ...+..+.+..-.||+.||+.|-|+.-|.+++.++
T Consensus 424 ~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l 503 (534)
T KOG3653|consen 424 ADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAEL 503 (534)
T ss_pred ccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHH
Confidence 01110 011 112222332221111 12345566788899999999999999999999888
Q ss_pred CCc
Q 003465 808 PYL 810 (818)
Q Consensus 808 ~~~ 810 (818)
...
T Consensus 504 ~~~ 506 (534)
T KOG3653|consen 504 MML 506 (534)
T ss_pred hcc
Confidence 333
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-15 Score=161.61 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=78.3
Q ss_pred ccccccCCCC-cccccccccceeccCCCCCccccccccceeCCC--C---CCcc--------hHHHHhc--c--cCCCcc
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--K---HPQE--------ILSLFSS--T--SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~---~~~~--------~l~~~~~--~--~~~~~~ 755 (818)
++|||+|.++ ++||||||++|.........+..+||++||||| + .+++ .++-|.- . .+....
T Consensus 171 ~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~ 250 (362)
T KOG0192|consen 171 SDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLA 250 (362)
T ss_pred hhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCC
Confidence 7899999998 999999999998765434455589999999999 2 2333 4555532 1 222211
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++....++.. +..+...+..++.+||+.+|+.||++.+++..|+.+
T Consensus 251 ~~~~~~~v~~~~~Rp~~---p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~ 303 (362)
T KOG0192|consen 251 PVQVASAVVVGGLRPPI---PKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESI 303 (362)
T ss_pred HHHHHHHHHhcCCCCCC---CccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHH
Confidence 1112222333332 444777788888899999999999999999999977
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-16 Score=162.73 Aligned_cols=151 Identities=18% Similarity=0.175 Sum_probs=106.8
Q ss_pred CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh----------------------------------------------
Q 003465 658 LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA---------------------------------------------- 691 (818)
Q Consensus 658 g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~---------------------------------------------- 691 (818)
|+||.|.+.....||||.++... ...+.|.+|+
T Consensus 220 G~V~~g~~~~~~~vavk~ik~~~-m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~ 298 (468)
T KOG0197|consen 220 GEVWLGKWNGSTKVAVKTIKEGS-MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLRTREGG 298 (468)
T ss_pred ceEEEEEEcCCCcccceEEeccc-cChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhhhcCCC
Confidence 99999999777799999776653 2446788887
Q ss_pred ---------------------------cc---ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCC----
Q 003465 692 ---------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPA---- 736 (818)
Q Consensus 692 ---------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE---- 736 (818)
|+ +.|||+|++..+|||||||||...++... .....--+.|.|||
T Consensus 299 ~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~ 378 (468)
T KOG0197|consen 299 LLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNY 378 (468)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhh
Confidence 22 78999999999999999999966544332 23333446899999
Q ss_pred CCCcchHHHHh------------cccCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 737 KHPQEILSLFS------------STSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 737 ~~~~~~l~~~~------------~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
.+.+-.-+.|+ +..++.....+++..--.+...+.+..|+..+.+|+..||+.+|++|||+......|
T Consensus 379 ~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l 458 (468)
T KOG0197|consen 379 GKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVL 458 (468)
T ss_pred CCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHH
Confidence 11111112232 233334444444444334444455778899999999999999999999999999999
Q ss_pred ccCCC
Q 003465 805 LKFPY 809 (818)
Q Consensus 805 ~~~~~ 809 (818)
+.+..
T Consensus 459 ~~~~~ 463 (468)
T KOG0197|consen 459 EDFFT 463 (468)
T ss_pred HHhhh
Confidence 88744
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-15 Score=167.43 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=77.2
Q ss_pred ccccccCCCCcccccccccceeccC-CC-CCccccccccceeCCC----CCCcchHHHHhcccC----------C--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNS-DS-SNRTLIAGTYRYIAPA----KHPQEILSLFSSTSD----------P--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~-~~-~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~~~----------~--~~~ 755 (818)
++|+|+.+++.+|||||||+|..-. |. .......=-++||+|| ++.+..-+.|+.... + ...
T Consensus 631 TRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glS 710 (774)
T KOG1026|consen 631 TRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLS 710 (774)
T ss_pred hhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccc
Confidence 6899999999999999999996622 21 1111222347899999 334334444543221 1 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
=.||++-.-.+...+.+..|+..+..|+..||+.+|++||+++||..+|+...+
T Consensus 711 n~EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~ 764 (774)
T KOG1026|consen 711 NQEVIECIRAGQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQ 764 (774)
T ss_pred hHHHHHHHHcCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHh
Confidence 123333222222234567788999999999999999999999999999998743
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-15 Score=148.08 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=69.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCCCcc-------------hHHHHhcccCCC-------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKHPQE-------------ILSLFSSTSDPH------- 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~~~~-------------~l~~~~~~~~~~------- 753 (818)
|+|||+.+.+++||||||+++.+..+ ...+.+||..||||||-..+ .+.+.+-..++.
T Consensus 207 PsNlLvNskGeVKicDFGVS~~lvnS--~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~ 284 (364)
T KOG0581|consen 207 PSNLLVNSKGEVKICDFGVSGILVNS--IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPY 284 (364)
T ss_pred HHHeeeccCCCEEeccccccHHhhhh--hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCC
Confidence 99999999999999999999988654 44567899999999943332 222333332221
Q ss_pred ccccceecccCCCcCccchHH-HHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 ITLTYILDQRISPPKKQKIVQ-DIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 ~~~~~~~d~~l~~~~~~~~~~-~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+.++....++....+.+ .-.++....-.|+++||.+||+.+|.++
T Consensus 285 ~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~ 334 (364)
T KOG0581|consen 285 LDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQ 334 (364)
T ss_pred CCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 112233333333222112222 3344555556999999999999999764
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-14 Score=140.08 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=73.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|.||+||+++.+|++||||+|.++.+...++..+||+.||.|| ..+++ ..+.|+-. .+......+
T Consensus 156 PaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~ 235 (375)
T KOG0591|consen 156 PANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLS 235 (375)
T ss_pred chheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 8899999999999999999999987776677889999999999 33443 33445422 222222222
Q ss_pred eecccCCCcCccch-HHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 759 ILDQRISPPKKQKI-VQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 759 ~~d~~l~~~~~~~~-~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
.-.+.-.++..+.+ .-.-..+.+|+-.|...||+.||+....++.+
T Consensus 236 L~~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di 282 (375)
T KOG0591|consen 236 LCKKIEQGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDI 282 (375)
T ss_pred HHHHHHcCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHH
Confidence 22222222322223 33345667788899999999999854444433
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-14 Score=148.89 Aligned_cols=164 Identities=16% Similarity=0.235 Sum_probs=106.1
Q ss_pred ccchHHHHHHHhhhhhhcccc----CcEEEEEcCCCcEEEEEeccccc--cchhhhhHhhh-------------------
Q 003465 637 RIAFEEIIRATEDLISDIALE----LDVTAAFTKHGCLVAEYGSEQGR--SAFFKSFQNEA------------------- 691 (818)
Q Consensus 637 ~~~~~~l~~at~~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~--~~~~~~f~~E~------------------- 691 (818)
.+.++|+..+ ..|| |+||+|.+. | .||||++.... .+..+.|++||
T Consensus 388 eIp~~ev~l~-------~rIGsGsFGtV~Rg~wh-G-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~ 458 (678)
T KOG0193|consen 388 EIPPEEVLLG-------ERIGSGSFGTVYRGRWH-G-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACM 458 (678)
T ss_pred ccCHHHhhcc-------ceeccccccceeecccc-c-ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhc
Confidence 4566665433 4566 999999974 4 49999765443 33567899999
Q ss_pred ----------------------------------------------cc---------ccccccCCCCcccccccccceec
Q 003465 692 ----------------------------------------------HV---------FNNILLNSEFEAFFGNFGVARLL 716 (818)
Q Consensus 692 ----------------------------------------------h~---------~~NILLd~~~~~ki~DFGla~~~ 716 (818)
|+ +.||+|+++.++||+||||+..-
T Consensus 459 ~p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk 538 (678)
T KOG0193|consen 459 NPPLAIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVK 538 (678)
T ss_pred CCceeeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeee
Confidence 21 78999999999999999998643
Q ss_pred cC--CCCCccccccccceeCCC--C----CCcc---h-----HHHH--hcccCCC--cc---ccceeccc-CCCcCccch
Q 003465 717 NS--DSSNRTLIAGTYRYIAPA--K----HPQE---I-----LSLF--SSTSDPH--IT---LTYILDQR-ISPPKKQKI 772 (818)
Q Consensus 717 ~~--~~~~~~~~~gt~gy~aPE--~----~~~~---~-----l~~~--~~~~~~~--~~---~~~~~d~~-l~~~~~~~~ 772 (818)
.. .+.......|..-||||| | .|+. + ++++ ....++. .. +.-++... ++.+.....
T Consensus 539 ~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~ 618 (678)
T KOG0193|consen 539 TRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIR 618 (678)
T ss_pred eeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhh
Confidence 22 222234556889999999 2 1211 2 2222 1222222 11 11112221 122221223
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 773 VQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 773 ~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
..+.+.+.+|...||..++++||.+.+++.+|+.+..
T Consensus 619 s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~ 655 (678)
T KOG0193|consen 619 SNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP 655 (678)
T ss_pred ccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence 4677788899999999999999999999998887743
|
|
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-13 Score=143.33 Aligned_cols=150 Identities=14% Similarity=0.083 Sum_probs=102.0
Q ss_pred CcEEEEEcCCCcEEEEEeccccccch-hhhhHhhh---------------------------------------------
Q 003465 658 LDVTAAFTKHGCLVAEYGSEQGRSAF-FKSFQNEA--------------------------------------------- 691 (818)
Q Consensus 658 g~vy~~~~~~g~~vAvK~~~~~~~~~-~~~f~~E~--------------------------------------------- 691 (818)
|+|..+....+..||||.++...... .++|.+|+
T Consensus 552 GEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGDLnqFl~ahea 631 (807)
T KOG1094|consen 552 GEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQFLSAHEL 631 (807)
T ss_pred ceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHHHHHhccC
Confidence 99999998878999999877665444 47899998
Q ss_pred ----------------------------cc---ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC--
Q 003465 692 ----------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA-- 736 (818)
Q Consensus 692 ----------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE-- 736 (818)
|+ +.|+|+|.+|++||||||++|-+-.+. ......+-.+.|||||
T Consensus 632 pt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsi 711 (807)
T KOG1094|consen 632 PTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESI 711 (807)
T ss_pred cccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHH
Confidence 22 789999999999999999999663332 2233445568999999
Q ss_pred --CCCcchHHHHhc-------------ccCCCccccceeccc-------CCCcCccchHHHHHHHHHHHHhccCCCCCCC
Q 003465 737 --KHPQEILSLFSS-------------TSDPHITLTYILDQR-------ISPPKKQKIVQDIALASIVALACLQSKPKSV 794 (818)
Q Consensus 737 --~~~~~~l~~~~~-------------~~~~~~~~~~~~d~~-------l~~~~~~~~~~~~~~~~~la~~C~~~~p~~R 794 (818)
.+.+..-+.|+. ..+..-.-.++++.. =.......+.-|+..+.+++++||..+-++|
T Consensus 712 llgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~R 791 (807)
T KOG1094|consen 712 LLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQR 791 (807)
T ss_pred HhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhcC
Confidence 222222223321 111111112222211 1111112355678889999999999999999
Q ss_pred CChHHHHHHHccC
Q 003465 795 PTMQRVSQEFLKF 807 (818)
Q Consensus 795 P~m~~V~~~L~~~ 807 (818)
|++.+++.-|.+.
T Consensus 792 PsFe~lh~~lq~~ 804 (807)
T KOG1094|consen 792 PSFEQLHLFLQED 804 (807)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999988753
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-14 Score=151.07 Aligned_cols=108 Identities=22% Similarity=0.301 Sum_probs=69.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcccC-----------CCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSSTSD-----------PHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~~~-----------~~~~~~~ 758 (818)
-+|++|+++|++||+|||||..+..+..-..+.+||+-|+||| +.... ..+.|+.... +...+.+
T Consensus 146 LGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vke 225 (592)
T KOG0575|consen 146 LGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKE 225 (592)
T ss_pred hhheeecCcCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHH
Confidence 5899999999999999999999877655556789999999999 22222 4566764332 2222222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+..-...+ ..+..--....+++..-++.+|.+||+..+|+.
T Consensus 226 ty~~Ik~~~Y-~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~ 268 (592)
T KOG0575|consen 226 TYNKIKLNEY-SMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLD 268 (592)
T ss_pred HHHHHHhcCc-ccccccCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 2221111111 001111122344566788999999999999984
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-14 Score=150.22 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=108.3
Q ss_pred hhcccc----CcEEEEEcC-CCcEEEEEeccccccchhhhhHhhh-----------------------------------
Q 003465 652 SDIALE----LDVTAAFTK-HGCLVAEYGSEQGRSAFFKSFQNEA----------------------------------- 691 (818)
Q Consensus 652 ~~~~ig----g~vy~~~~~-~g~~vAvK~~~~~~~~~~~~f~~E~----------------------------------- 691 (818)
-.+.+| |.||-|++. ....||||.++++.. ...+|..|+
T Consensus 271 MkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtM-eveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGN 349 (1157)
T KOG4278|consen 271 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGN 349 (1157)
T ss_pred eeeccCCCcccceeeeeeeccceeeehhhhhhcch-hHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCcc
Confidence 345666 899999984 478999998877643 567788876
Q ss_pred --------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCc-cccccc
Q 003465 692 --------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNR-TLIAGT 729 (818)
Q Consensus 692 --------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~-~~~~gt 729 (818)
|+ +.|.|+.++..+||+||||+|++..+.... .+..--
T Consensus 350 LLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFP 429 (1157)
T KOG4278|consen 350 LLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFP 429 (1157)
T ss_pred HHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccCccCc
Confidence 22 689999999999999999999997664322 122233
Q ss_pred cceeCCCCCCcc----hHHHHh------------cccCCCccc---cceecccCCCcCccchHHHHHHHHHHHHhccCCC
Q 003465 730 YRYIAPAKHPQE----ILSLFS------------STSDPHITL---TYILDQRISPPKKQKIVQDIALASIVALACLQSK 790 (818)
Q Consensus 730 ~gy~aPE~~~~~----~l~~~~------------~~~~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~ 790 (818)
+.|.|||.-++. .-+.|+ ...++...+ .++++...+-+ .+..|+..+.+++..||+.+
T Consensus 430 IKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~---~PeGCPpkVYeLMraCW~Ws 506 (1157)
T KOG4278|consen 430 IKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMD---GPEGCPPKVYELMRACWNWS 506 (1157)
T ss_pred ccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhcccccc---CCCCCCHHHHHHHHHHhcCC
Confidence 789999943332 222332 233343333 33344433332 36678999999999999999
Q ss_pred CCCCCChHHHHHHHccC
Q 003465 791 PKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 791 p~~RP~m~~V~~~L~~~ 807 (818)
|.+||+++|+.+.++.+
T Consensus 507 PsDRPsFaeiHqafEtm 523 (1157)
T KOG4278|consen 507 PSDRPSFAEIHQAFETM 523 (1157)
T ss_pred cccCccHHHHHHHHHHH
Confidence 99999999999999887
|
|
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-13 Score=137.86 Aligned_cols=117 Identities=20% Similarity=0.284 Sum_probs=79.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC-------------CCCcc----hHHHHh--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA-------------KHPQE----ILSLFS--STS 750 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE-------------~~~~~----~l~~~~--~~~ 750 (818)
+.|||+..++...|||+|||-....+.. ....-+||-+||||| ++-.| .++.|. ++.
T Consensus 344 SKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc 423 (513)
T KOG2052|consen 344 SKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRC 423 (513)
T ss_pred cccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999987655432 234567999999999 11122 455563 111
Q ss_pred CC-----------------Ccc---ccce-ecccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 DP-----------------HIT---LTYI-LDQRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~~-----------------~~~---~~~~-~d~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.. +.+ +.++ -..++++... ....+++..+.+++..||..+|..|-|+-.+-+.|.++
T Consensus 424 ~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l 503 (513)
T KOG2052|consen 424 ESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKL 503 (513)
T ss_pred hcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHH
Confidence 10 011 1111 1233333321 22456788899999999999999999999999999888
Q ss_pred CCc
Q 003465 808 PYL 810 (818)
Q Consensus 808 ~~~ 810 (818)
...
T Consensus 504 ~~~ 506 (513)
T KOG2052|consen 504 SNS 506 (513)
T ss_pred hcC
Confidence 543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-13 Score=154.62 Aligned_cols=108 Identities=26% Similarity=0.337 Sum_probs=87.0
Q ss_pred CCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCc
Q 003465 439 LHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLD 518 (818)
Q Consensus 439 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~ 518 (818)
++.|+|++|.+.|.+|..+..+. .|+.|++++|.++|.+|. .++.+++|+.|||++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~------~L~~L~Ls~N~l~g~iP~--------------~~~~l~~L~~LdLs~N~ls 479 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLR------HLQSINLSGNSIRGNIPP--------------SLGSITSLEVLDLSYNSFN 479 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCC------CCCEEECCCCcccCcCCh--------------HHhCCCCCCEEECCCCCCC
Confidence 66778888888888777776666 778888888887766665 7888899999999999999
Q ss_pred cCCcccccCCCCCCeeeCcCCCCcccCCcccc---cCCCCCcccCcCCCCC
Q 003465 519 GTIPLEMGKIIFLEYLDLSYNNIPGTVPEFIN---RIMPADLVPMINFSIS 566 (818)
Q Consensus 519 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~---~~~~~~~~~~n~~~~~ 566 (818)
|.+|..++++++|+.|+|++|+++|.+|.... .......+.+|+.+|.
T Consensus 480 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 99999999999999999999999999998322 2234456788999993
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-13 Score=160.19 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=76.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCcccccc--ccceeCCC----CCC---cc----hHHHHh-----cccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAG--TYRYIAPA----KHP---QE----ILSLFS-----STSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~g--t~gy~aPE----~~~---~~----~l~~~~-----~~~~~~~~ 755 (818)
++|+|||+...+||+||||||.+-..........+ -+.||||| ... +| .+.-|. ...+++.+
T Consensus 830 aRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~ 909 (1025)
T KOG1095|consen 830 ARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRS 909 (1025)
T ss_pred hhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcc
Confidence 78999999999999999999955332211111112 25899999 111 22 223331 23334433
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
-.+++...+.+...+.+..|+..+.+|+..||+.+|++||++..+++.+..+
T Consensus 910 n~~v~~~~~~ggRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i 961 (1025)
T KOG1095|consen 910 NFEVLLDVLEGGRLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAI 961 (1025)
T ss_pred hHHHHHHHHhCCccCCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhh
Confidence 3444443333333344667888999999999999999999999999988887
|
|
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-13 Score=148.10 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=76.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC----CCCcchHHHHhc------------ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA----KHPQEILSLFSS------------TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE----~~~~~~l~~~~~------------~~~~~~~ 755 (818)
++|||+.+--.+||+|||+||++..+... .....-.+.|||-| +..+..-+.|+. ..+....
T Consensus 826 aRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~ 905 (1177)
T KOG1025|consen 826 ARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIP 905 (1177)
T ss_pred hhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCC
Confidence 79999999999999999999999766433 23344446788888 222222233332 2222223
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+|-|---.+...+.+..|...+..+++.||..|++.||++++...++.++
T Consensus 906 ~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ 957 (1177)
T KOG1025|consen 906 AEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRM 957 (1177)
T ss_pred HHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHH
Confidence 3333221111222234667888999999999999999999999999988877
|
|
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-13 Score=142.55 Aligned_cols=116 Identities=12% Similarity=0.124 Sum_probs=84.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCC----CCCcchHHHHhc------------ccCCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPA----KHPQEILSLFSS------------TSDPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE----~~~~~~l~~~~~------------~~~~~~~~ 756 (818)
.+|||+.+.-.+|++||||+|.+++++.. .+..+-.+.||||| |+.+..-+.|.. ..+....-
T Consensus 519 aRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkN 598 (974)
T KOG4257|consen 519 ARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKN 598 (974)
T ss_pred hhheeecCcceeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccc
Confidence 68999999999999999999999766432 34444557899999 555443333431 22222222
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
.+++-..-.+...+.+..|+..+..++-.||+.+|.+||++.|+...|..+.+
T Consensus 599 sDVI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~q 651 (974)
T KOG4257|consen 599 SDVIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ 651 (974)
T ss_pred cceEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence 34444444444456678899999999999999999999999999999888743
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-13 Score=152.06 Aligned_cols=150 Identities=30% Similarity=0.445 Sum_probs=111.3
Q ss_pred CCHHHHHHHHcCCCC--C--CCCCCCCCCCCCC----CccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEE
Q 003465 36 PIRLEREALLNTGWW--N--NSREKASNHSDHC----KWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFR 107 (818)
Q Consensus 36 ~~~~~~~~ll~~~~~--~--~~~~~~~~~~~~c----~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~ 107 (818)
+.+.|.+||+..+.. . ..+|. +..|| .|.||.|+.... .....++.|+
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~~~W~---g~~C~p~~~~w~Gv~C~~~~~---------------------~~~~~v~~L~ 424 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLRFGWN---GDPCVPQQHPWSGADCQFDST---------------------KGKWFIDGLG 424 (623)
T ss_pred cCchHHHHHHHHHHhcCCcccCCCC---CCCCCCcccccccceeeccCC---------------------CCceEEEEEE
Confidence 456688888764321 1 23674 33332 799999953110 0011357788
Q ss_pred cCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCC
Q 003465 108 IWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG 187 (818)
Q Consensus 108 L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 187 (818)
|++|.+.+.+|..++++++|+.|+|++|.+.+.+|..++.+++|++|+|++|++++.+|..++++++|++|+|++|.+++
T Consensus 425 L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred CCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 88888888889889999999999999999988888888889999999999999888888888888888888888888888
Q ss_pred CCccCCCCC-CCCcEEEcccCcC
Q 003465 188 PIPFTLGHL-TQLTTLKLFSNQI 209 (818)
Q Consensus 188 ~~~~~l~~l-~~L~~L~L~~n~l 209 (818)
.+|..+..+ .++..+++.+|..
T Consensus 505 ~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 505 RVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCChHHhhccccCceEEecCCcc
Confidence 888777643 3556666666643
|
|
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8e-13 Score=140.59 Aligned_cols=104 Identities=21% Similarity=0.367 Sum_probs=69.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcccC---------C---Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSSTSD---------P---HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~~~---------~---~~~~~ 757 (818)
+.||||+.++.+||+|||++..+.......++.+||+.||||| +++++ .++.|.-+.. + +..+.
T Consensus 397 SDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~Plr 476 (550)
T KOG0578|consen 397 SDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR 476 (550)
T ss_pred cceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHH
Confidence 7999999999999999999998876665667789999999999 55555 4455542211 1 10000
Q ss_pred --c-e---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 --Y-I---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 --~-~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+ + -.|.+... +....+...++. +|++.|+++||++.|+++
T Consensus 477 AlyLIa~ng~P~lk~~--~klS~~~kdFL~---~cL~~dv~~RasA~eLL~ 522 (550)
T KOG0578|consen 477 ALYLIATNGTPKLKNP--EKLSPELKDFLD---RCLVVDVEQRASAKELLE 522 (550)
T ss_pred HHHHHhhcCCCCcCCc--cccCHHHHHHHH---HHhhcchhcCCCHHHHhc
Confidence 0 0 01122111 112234444554 999999999999999875
|
|
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-12 Score=133.56 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=67.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCC-----cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPH-----IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~-----~~ 755 (818)
+.|||+.+++.+|++|||++..+.....-..+.+||+.||||| ...++ ..+-|.- ...+. .+
T Consensus 139 aanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmr 218 (467)
T KOG0201|consen 139 AANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMR 218 (467)
T ss_pred ccceeEeccCcEEEEecceeeeeechhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcce
Confidence 7899999999999999999998876655456789999999999 22233 3334431 11111 11
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+..++-+.-.+.. ....-..+-+.+-.|++.+|+.||++.++++
T Consensus 219 vlflIpk~~PP~L---~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLK 262 (467)
T KOG0201|consen 219 VLFLIPKSAPPRL---DGDFSPPFKEFVEACLDKNPEFRPSAKELLK 262 (467)
T ss_pred EEEeccCCCCCcc---ccccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence 1122221111111 1122223444555999999999999999874
|
|
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-12 Score=137.40 Aligned_cols=112 Identities=12% Similarity=0.088 Sum_probs=70.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC-----CC-cchHHHHhc---------c--cCCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-----HP-QEILSLFSS---------T--SDPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-----~~-~~~l~~~~~---------~--~~~~~~~ 756 (818)
|+|||+|+++++||+|||+++.+... .....||..|+|||. .. +...+.|+. . .+.....
T Consensus 151 p~nill~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~ 227 (283)
T PHA02988 151 SVSFLVTENYKLKIICHGLEKILSSP---PFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT 227 (283)
T ss_pred hhhEEECCCCcEEEcccchHhhhccc---cccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCH
Confidence 79999999999999999999876432 223468999999991 11 112223321 1 1112111
Q ss_pred cceecccCCCc-CccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 757 TYILDQRISPP-KKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 757 ~~~~d~~l~~~-~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.++.+..+... ....+..+...+.+++.+||+.+|++||+|.||++.|+...
T Consensus 228 ~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~ 280 (283)
T PHA02988 228 KEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK 280 (283)
T ss_pred HHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence 22222111110 00112234456778888999999999999999999998764
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-12 Score=132.45 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=69.9
Q ss_pred ccccccCCC---CcccccccccceeccCCCCCccccccccceeCCC---CCCc----chHHHHhcccC---------CC-
Q 003465 694 FNNILLNSE---FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ----EILSLFSSTSD---------PH- 753 (818)
Q Consensus 694 ~~NILLd~~---~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~----~~l~~~~~~~~---------~~- 753 (818)
|.||||..+ ...||+|||+||.... .+-+.+.|||++|+||| ...+ ..++.|+.... |.
T Consensus 304 PeNILl~~~~e~~llKItDFGlAK~~g~-~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS 382 (475)
T KOG0615|consen 304 PENILLSNDAEDCLLKITDFGLAKVSGE-GSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFS 382 (475)
T ss_pred cceEEeccCCcceEEEecccchhhcccc-ceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcc
Confidence 999999665 8899999999998763 34566789999999999 1111 24556754322 11
Q ss_pred ccccc--eecccCCCcC---ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 ITLTY--ILDQRISPPK---KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 ~~~~~--~~d~~l~~~~---~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+ +.++...+.+ .+.+.+--++...++-+.+..||++||+..|+++
T Consensus 383 ~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~ 436 (475)
T KOG0615|consen 383 EEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALN 436 (475)
T ss_pred cccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence 00111 1122222221 1223344456677888999999999999999874
|
|
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-12 Score=135.24 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=71.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~~ 757 (818)
++||+++++..+|++|||+++....+........++.+|+||| +.+....+.|.. ...+. ....
T Consensus 132 ~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~ 211 (261)
T cd05148 132 ARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNH 211 (261)
T ss_pred cceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHH
Confidence 8999999999999999999987754433333445778999999 222212223321 11111 1111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
++++........+.+..+...+.+++.+|++.+|++||+|+++.+.|+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~ 261 (261)
T cd05148 212 EVYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDNI 261 (261)
T ss_pred HHHHHHHhCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence 12111111111011233445677899999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-12 Score=123.45 Aligned_cols=43 Identities=33% Similarity=0.410 Sum_probs=37.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|.|+|+++++..|||||||||.+.......+..+-|.-|-|||
T Consensus 129 PnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPE 171 (318)
T KOG0659|consen 129 PNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPE 171 (318)
T ss_pred ccceEEcCCCcEEeecccchhccCCCCcccccceeeeeccChH
Confidence 8999999999999999999999876555444447889999999
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-12 Score=131.22 Aligned_cols=109 Identities=19% Similarity=0.246 Sum_probs=66.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---c-cccccccceeCCCC--C---Ccc-hHHHHhc---------ccCCC-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---R-TLIAGTYRYIAPAK--H---PQE-ILSLFSS---------TSDPH- 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---~-~~~~gt~gy~aPE~--~---~~~-~l~~~~~---------~~~~~- 753 (818)
++|||||+++.+|++|||.+..+-..... . ...+||+.|||||- . -++ ..+.|.. ...+.
T Consensus 154 AgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~ 233 (516)
T KOG0582|consen 154 AGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFS 233 (516)
T ss_pred cccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcc
Confidence 89999999999999999998877443221 1 45789999999991 1 122 2333432 22221
Q ss_pred -ccccceecccCCCcCc---------cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 -ITLTYILDQRISPPKK---------QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 -~~~~~~~d~~l~~~~~---------~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+++-..+.+... +.....-..+.++.-.|++.||++|||+++.++
T Consensus 234 k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk 292 (516)
T KOG0582|consen 234 KYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK 292 (516)
T ss_pred cCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 1122233223322220 001112234566777999999999999998763
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-12 Score=139.49 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=74.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~-----------~~~~~~~~~ 758 (818)
-.|||||.++++|||||||+|..--....+++.+||+-||||| ...+..+++|+.. .++...-.+
T Consensus 496 LdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee 575 (694)
T KOG0694|consen 496 LDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEE 575 (694)
T ss_pred hhheEEcccCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence 5799999999999999999997643445677899999999999 2233367788632 334444566
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
+.|..+.... ..+.-...+.+.|+.+-+..+|++|-.+
T Consensus 576 ~FdsI~~d~~-~yP~~ls~ea~~il~~ll~k~p~kRLG~ 613 (694)
T KOG0694|consen 576 VFDSIVNDEV-RYPRFLSKEAIAIMRRLLRKNPEKRLGS 613 (694)
T ss_pred HHHHHhcCCC-CCCCcccHHHHHHHHHHhccCcccccCC
Confidence 6666664432 2234445566677778899999999888
|
|
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-12 Score=122.10 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=64.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC------Ccc-hHHHHhc---------ccCCC-c--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH------PQE-ILSLFSS---------TSDPH-I-- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~------~~~-~l~~~~~---------~~~~~-~-- 754 (818)
|||||+|+.++.|++|||++..+-++ ...+..+|-..||||||- .+| -.+.|.. ..++. +
T Consensus 220 PSNILlDe~GniKlCDFGIsGrlvdS-kAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~ 298 (391)
T KOG0983|consen 220 PSNILLDERGNIKLCDFGISGRLVDS-KAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCK 298 (391)
T ss_pred ccceEEccCCCEEeecccccceeecc-cccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCC
Confidence 99999999999999999999877444 334566899999999932 122 2334432 22221 0
Q ss_pred ----cccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 ----TLTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ----~~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+..+++ |.+.+. ..--..+.+....|+..|+.+||...++++
T Consensus 299 tdFe~ltkvln~ePP~L~~~-----~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~ 348 (391)
T KOG0983|consen 299 TDFEVLTKVLNEEPPLLPGH-----MGFSPDFQSFVKDCLTKDHRKRPKYNKLLE 348 (391)
T ss_pred ccHHHHHHHHhcCCCCCCcc-----cCcCHHHHHHHHHHhhcCcccCcchHHHhc
Confidence 0112222 122111 111234555666999999999999887654
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-12 Score=133.00 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=64.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||||+++++|++||||+|..-.++..+.+.+||+-||||| +.+++ .+++|+-. .+......+
T Consensus 153 PENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~ 232 (357)
T KOG0598|consen 153 PENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKK 232 (357)
T ss_pred HHHeeecCCCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHH
Confidence 8999999999999999999997766666677799999999999 55555 55666532 222223334
Q ss_pred eecccCCCcCc---cchHHHHHHHHHHHHhccCCCCCCCC
Q 003465 759 ILDQRISPPKK---QKIVQDIALASIVALACLQSKPKSVP 795 (818)
Q Consensus 759 ~~d~~l~~~~~---~~~~~~~~~~~~la~~C~~~~p~~RP 795 (818)
+.|..+.++.. .....++..++ ..-+..+|++|-
T Consensus 233 ~~~~I~~~k~~~~p~~ls~~ardll---~~LL~rdp~~RL 269 (357)
T KOG0598|consen 233 MYDKILKGKLPLPPGYLSEEARDLL---KKLLKRDPRQRL 269 (357)
T ss_pred HHHHHhcCcCCCCCccCCHHHHHHH---HHHhccCHHHhc
Confidence 44443333210 11223333333 355678888885
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-12 Score=135.42 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=75.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc--------hHHHHhcc--c--CCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE--------ILSLFSST--S--DPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~--------~l~~~~~~--~--~~~~~~~~ 758 (818)
+-|||+..+-.+||+|||-+|....- +.....+||+.||||| ..|.. .++-|..- . +.+..-..
T Consensus 240 SPNiLIs~~d~VKIsDFGTS~e~~~~-STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssA 318 (904)
T KOG4721|consen 240 SPNILISYDDVVKISDFGTSKELSDK-STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSA 318 (904)
T ss_pred CCceEeeccceEEeccccchHhhhhh-hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchhe
Confidence 67999999999999999999987554 3445689999999999 33432 33344211 1 11111111
Q ss_pred ee----cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 759 IL----DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 759 ~~----d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
|+ ...+. .+.+..|+..+.-++..||+..|..||++++++..|+=.
T Consensus 319 IIwGVGsNsL~---LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~HldIa 368 (904)
T KOG4721|consen 319 IIWGVGSNSLH---LPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDIA 368 (904)
T ss_pred eEEeccCCccc---ccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHhhc
Confidence 10 11111 133667788888888999999999999999999988754
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-12 Score=124.08 Aligned_cols=43 Identities=33% Similarity=0.356 Sum_probs=38.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|.|||+..++.+|++|||+||.+.......|.-+.|..|-|||
T Consensus 129 PENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPE 171 (396)
T KOG0593|consen 129 PENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPE 171 (396)
T ss_pred hhheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccChh
Confidence 8999999999999999999999976555667778899999999
|
|
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.7e-12 Score=131.36 Aligned_cols=43 Identities=28% Similarity=0.321 Sum_probs=37.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE 736 (818)
.+|||||.++..||||||||++...... ..|..+-|..|-|||
T Consensus 246 ~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPE 289 (560)
T KOG0600|consen 246 GSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPE 289 (560)
T ss_pred ccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChH
Confidence 7999999999999999999998866543 356667899999999
|
|
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-12 Score=145.08 Aligned_cols=110 Identities=20% Similarity=0.254 Sum_probs=68.9
Q ss_pred ccccccCCCCcccccccccceeccCC--CCCccccccccceeCCC---CCCc-chHHHHhc-----------ccCCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD--SSNRTLIAGTYRYIAPA---KHPQ-EILSLFSS-----------TSDPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~--~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~-----------~~~~~~~~ 756 (818)
|+|||+++++.+||+|||+++..... ........||++|+||| ..+. ...+.|+. ..+.....
T Consensus 171 P~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~ 250 (496)
T PTZ00283 171 SANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENM 250 (496)
T ss_pred HHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence 89999999999999999999876433 12234567999999999 2222 22333431 11122222
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.++++..+.+...+.+......+.+++..|++.+|++||++.++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~ 297 (496)
T PTZ00283 251 EEVMHKTLAGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNM 297 (496)
T ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence 23333322221111122233456678889999999999999998753
|
|
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-12 Score=132.74 Aligned_cols=42 Identities=31% Similarity=0.342 Sum_probs=35.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|.|||+.....+|||||||||.+.. +..-|.-+.|..|-|||
T Consensus 138 PENiLi~~~~~iKiaDFGLARev~S-kpPYTeYVSTRWYRAPE 179 (538)
T KOG0661|consen 138 PENILISGNDVIKIADFGLAREVRS-KPPYTEYVSTRWYRAPE 179 (538)
T ss_pred hhheEecccceeEeccccccccccc-CCCcchhhhcccccchH
Confidence 9999999999999999999998743 33445667899999999
|
|
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-11 Score=129.19 Aligned_cols=110 Identities=19% Similarity=0.234 Sum_probs=67.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCCC----CCcchHHHHh---------c-ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPAK----HPQEILSLFS---------S-TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE~----~~~~~l~~~~---------~-~~~~~--~~~ 756 (818)
|+||++++++.+||+|||+++........ .....++.+|+|||. .++...+.|+ . ...+. ...
T Consensus 131 p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~ 210 (261)
T cd05068 131 ARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTN 210 (261)
T ss_pred cceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH
Confidence 89999999999999999999987533211 222334568999992 1111112221 1 11111 111
Q ss_pred cce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 757 TYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 757 ~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.++ ++...... .+......+.+++.+|++.+|++||+|.++.+.|+.
T Consensus 211 ~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~ 260 (261)
T cd05068 211 AEVLQQVDQGYRMP---CPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED 260 (261)
T ss_pred HHHHHHHHcCCCCC---CCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence 111 11111111 122344567788899999999999999999999985
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.5e-12 Score=130.60 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=68.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+||++++++.+|++|||+++....... ......++..|+|||. ..+...+.|.. ...+ ...
T Consensus 134 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~ 213 (266)
T cd05033 134 ARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS 213 (266)
T ss_pred cceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC
Confidence 8999999999999999999998752211 1223445678999992 11111122211 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+........+.+..+...+.+++..|++.+|++||+|.||+++|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~ 265 (266)
T cd05033 214 NQDVIKAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265 (266)
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 1111111111100011223345677899999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-12 Score=126.70 Aligned_cols=108 Identities=25% Similarity=0.289 Sum_probs=66.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCCCcc---cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDPHIT---LT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~~~~---~~ 757 (818)
+.||||+-++.||++|||+|..+.+......++.||+.||||| .-.++ ..+.|.-. ..+... +.
T Consensus 157 AGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMR 236 (502)
T KOG0574|consen 157 AGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMR 236 (502)
T ss_pred cccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccc
Confidence 7899999999999999999998866555556788999999999 11112 22334321 111110 11
Q ss_pred ce-ecccC-CCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YI-LDQRI-SPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~-~d~~l-~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+ +-|.- .+.+ ..+.+--..+-+....|+-..|++|-|+.++.+
T Consensus 237 AIFMIPT~PPPTF-~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~ 282 (502)
T KOG0574|consen 237 AIFMIPTKPPPTF-KKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE 282 (502)
T ss_pred eeEeccCCCCCCC-CChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 11 11111 1111 123333334555666999999999999877654
|
|
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-12 Score=125.04 Aligned_cols=107 Identities=21% Similarity=0.258 Sum_probs=73.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC--------CCCcc--hHHHHhcccC---------CCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--------KHPQE--ILSLFSSTSD---------PHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--------~~~~~--~l~~~~~~~~---------~~~ 754 (818)
|.|||+|++++.||+|||+|..+..+. .-...+||+||+||| ..|.- .++.|+.... +..
T Consensus 151 pENILlddn~~i~isDFGFa~~l~~Ge-kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFw 229 (411)
T KOG0599|consen 151 PENILLDDNMNIKISDFGFACQLEPGE-KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFW 229 (411)
T ss_pred hhheeeccccceEEeccceeeccCCch-hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchh
Confidence 899999999999999999999886553 345689999999999 22221 5677764321 111
Q ss_pred c------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 T------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. +.-++........ +.+.+--..+-+++.+|++.||.+|-|..|+++
T Consensus 230 HRkQmlMLR~ImeGkyqF~s-peWadis~~~KdLIsrlLqVdp~~Ritake~La 282 (411)
T KOG0599|consen 230 HRKQMLMLRMIMEGKYQFRS-PEWADISATVKDLISRLLQVDPTKRITAKEALA 282 (411)
T ss_pred HHHHHHHHHHHHhcccccCC-cchhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence 1 1112222322222 334444556667888999999999999999874
|
|
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-11 Score=128.88 Aligned_cols=111 Identities=15% Similarity=0.233 Sum_probs=67.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCCC----CCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||++++++.+|++|||+++....... ......++.+|+|||. ......+.|+. ...+. ...
T Consensus 131 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~ 210 (261)
T cd05072 131 AANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSN 210 (261)
T ss_pred hhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCH
Confidence 8999999999999999999987654321 2233456788999992 11111222321 11111 100
Q ss_pred cceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.++.. ....... .......+.+++.+|++.+|++||+|.++.+.|+.+
T Consensus 211 ~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 261 (261)
T cd05072 211 SDVMSALQRGYRMPR---MENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF 261 (261)
T ss_pred HHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence 01111 1111111 112334567888899999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-11 Score=129.45 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=70.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCCC----CCcchHHHHhcc----------cCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPAK----HPQEILSLFSST----------SDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE~----~~~~~l~~~~~~----------~~~--~~~ 755 (818)
|+||++++++.+||+|||+++...... .......++..|+|||. ..+...+.|+.. ..+ ...
T Consensus 152 p~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~ 231 (283)
T cd05048 152 ARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFS 231 (283)
T ss_pred cceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence 899999999999999999998764322 12334567889999992 111122333211 111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++............+..+...+.+++..||+.+|++||+++||+++|+++
T Consensus 232 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~ 283 (283)
T cd05048 232 NQEVIEMIRSRQLLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW 283 (283)
T ss_pred HHHHHHHHHcCCcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence 1111111001111111334556778899999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-11 Score=129.04 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=69.5
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCCC----CCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+||++++++.+||+|||+++.+.... .......+++.|+|||. .++...+.|+. ...+ ...
T Consensus 152 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~ 231 (283)
T cd05091 152 TRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS 231 (283)
T ss_pred hhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCC
Confidence 899999999999999999998764322 12234456789999991 11112222321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
..++++........+.+..+...+.+++..|++.+|++||+|.+|++.|+.
T Consensus 232 ~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~ 282 (283)
T cd05091 232 NQDVIEMIRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT 282 (283)
T ss_pred HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence 112222211111111123345567788999999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-11 Score=128.01 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=68.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCC----CCCcchHHHHhc----------c--cCCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPA----KHPQEILSLFSS----------T--SDPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~--~~~~~~~ 756 (818)
|+||++++++.+|++|||+++........ .....++.+|+||| ..++...+.|+. . .++....
T Consensus 132 p~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~ 211 (263)
T cd05052 132 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL 211 (263)
T ss_pred cceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence 89999999999999999999876543221 12233567899999 222222223321 1 1111111
Q ss_pred cce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+. +........ +......+.+++.+|++.+|++||+|.+++++|+.+
T Consensus 212 ~~~~~~~~~~~~~~~---~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 262 (263)
T cd05052 212 SQVYELLEKGYRMER---PEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM 262 (263)
T ss_pred HHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence 111 111111111 222345677788899999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-11 Score=126.17 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=66.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCCC----CCcchHHHHhc----------ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~--~~~~ 756 (818)
|+||++++++.+|++|||+++....... ......++.+|+|||. ......+.|+. ...+ ....
T Consensus 128 p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~ 207 (256)
T cd05114 128 ARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN 207 (256)
T ss_pred cceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH
Confidence 8999999999999999999986643221 2233456678999992 11112222321 1111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
.+.+.....+.....+......+.+++.+|++.+|++||+|.++++.|.
T Consensus 208 ~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l~ 256 (256)
T cd05114 208 YEVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAIT 256 (256)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence 1111111111100111122345778999999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.3e-12 Score=132.22 Aligned_cols=105 Identities=25% Similarity=0.298 Sum_probs=67.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcccC---------C--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSSTSD---------P--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~~~---------~--~~~~~~ 758 (818)
|+||||+..+++|++|||+||.+....+.-+.+.||+-||||| ..|++ ..+-|+-... + ...+.+
T Consensus 128 PqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~ 207 (808)
T KOG0597|consen 128 PQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQ 207 (808)
T ss_pred cceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 8999999999999999999999887777778999999999999 56666 4444542211 1 112222
Q ss_pred eecccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHH
Q 003465 759 ILDQRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVS 801 (818)
Q Consensus 759 ~~d~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~ 801 (818)
.+...+..+.. ..-..+...+++ --+..||..|-+..+..
T Consensus 208 Lv~~I~~d~v~~p~~~S~~f~nfl~---gLL~kdP~~RltW~~Ll 249 (808)
T KOG0597|consen 208 LVKSILKDPVKPPSTASSSFVNFLQ---GLLIKDPAQRLTWTDLL 249 (808)
T ss_pred HHHHHhcCCCCCcccccHHHHHHHH---HHhhcChhhcccHHHHh
Confidence 22222221110 011122333333 45689999998887765
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-11 Score=133.50 Aligned_cols=197 Identities=41% Similarity=0.604 Sum_probs=86.2
Q ss_pred EEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCC-CCcEEEcccCcCCccCCccccCCCCCCEEEccCC
Q 003465 153 ELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLT-QLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231 (818)
Q Consensus 153 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 231 (818)
.|++..|.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4555555543 12223334455555555555555 3333333442 5555555555554 22233444445555555554
Q ss_pred cCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCch
Q 003465 232 KLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP 311 (818)
Q Consensus 232 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 311 (818)
++.. ++......+.|+.|++++|++. .+|........|++|.+++|.+. ..+.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-------------------------~l~~~~~~~~~L~~l~~~~N~~~-~~~~ 226 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-------------------------DLPPEIELLSALEELDLSNNSII-ELLS 226 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc-------------------------cCchhhhhhhhhhhhhhcCCcce-ecch
Confidence 4442 2222223344444444444444 22322222333444444444221 1223
Q ss_pred hhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCC
Q 003465 312 TLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIP 382 (818)
Q Consensus 312 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 382 (818)
.+..+.++..|.+.+|++.. ++..++.+++++.|++++|.++.... ++.+.+++.|++++|.+....+
T Consensus 227 ~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 34444444444444444431 23344444555555555555543222 4455555555555555554433
|
|
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-11 Score=132.34 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCCC-------c--chHHHHhcc---------cCCCc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKHP-------Q--EILSLFSST---------SDPHI- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~~-------~--~~l~~~~~~---------~~~~~- 754 (818)
++|||+++++.+||+|||+++.+..........+||.+|+|||.-. . ...+.|+.. ..+..
T Consensus 196 p~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~ 275 (353)
T PLN00034 196 PSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGV 275 (353)
T ss_pred HHHEEEcCCCCEEEcccccceecccccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCC
Confidence 8999999999999999999998754433344567999999999210 0 022334321 11110
Q ss_pred -cccc---eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 755 -TLTY---ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 755 -~~~~---~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
...+ .+..................+.+++..|++.+|++||++.||++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~h 328 (353)
T PLN00034 276 GRQGDWASLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQH 328 (353)
T ss_pred CCCccHHHHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0000 000000000001111223456677889999999999999999865
|
|
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-12 Score=132.19 Aligned_cols=111 Identities=20% Similarity=0.238 Sum_probs=63.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHh------------cccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFS------------STSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~------------~~~~~~~~ 755 (818)
++||++|+++.+||+|||+++....... ......+...|+||| ..++..-+.|+ ...+.+..
T Consensus 131 ~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~ 210 (259)
T PF07714_consen 131 PSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYD 210 (259)
T ss_dssp GGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999998732221 123345778999999 22222112221 11122211
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
..++......+...+.+..+...+.+++..||+.+|++||+|.+++++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 211 NEEIIEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp HHHHHHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred cccccccccccccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence 1111111111111111223455677888999999999999999999986
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-11 Score=128.29 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=67.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC---CCc-chHHHHhcc-----------cCCCc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK---HPQ-EILSLFSST-----------SDPHI-- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~---~~~-~~l~~~~~~-----------~~~~~-- 754 (818)
|+|||+++++.+||+|||+++.+..... ......++..|+|||. .+. ...+.|+.. ..+..
T Consensus 166 p~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~ 245 (304)
T cd05096 166 TRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGEL 245 (304)
T ss_pred hhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcC
Confidence 8999999999999999999987643321 1234456889999991 111 122223211 11110
Q ss_pred cccceecc-------cCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 755 TLTYILDQ-------RISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 755 ~~~~~~d~-------~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
...++++. .........+..+...+.+++.+|++.+|++||+|.+|++.|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~~ 304 (304)
T cd05096 246 TDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLTE 304 (304)
T ss_pred CHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence 11111100 00000000112334567889999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-11 Score=128.07 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=66.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC-------CCCcchHHHHhcc---------cCCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA-------KHPQEILSLFSST---------SDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE-------~~~~~~l~~~~~~---------~~~~~~~~ 757 (818)
+.||||.+.+.+|++|||-|-+... ....+||+.||||| ....+.++.|+-+ ..+-.++.
T Consensus 154 AGNILLse~g~VKLaDFGSAsi~~P----AnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMN 229 (948)
T KOG0577|consen 154 AGNILLSEPGLVKLADFGSASIMAP----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN 229 (948)
T ss_pred ccceEecCCCeeeeccccchhhcCc----hhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCch
Confidence 7899999999999999998876543 34578999999999 2222355666421 11111111
Q ss_pred ---------ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 ---------YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ---------~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+--.|.+... .+.+....+++ .|++.-|.+|||..+.++
T Consensus 230 AMSALYHIAQNesPtLqs~---eWS~~F~~Fvd---~CLqKipqeRptse~ll~ 277 (948)
T KOG0577|consen 230 AMSALYHIAQNESPTLQSN---EWSDYFRNFVD---SCLQKIPQERPTSEELLK 277 (948)
T ss_pred HHHHHHHHHhcCCCCCCCc---hhHHHHHHHHH---HHHhhCcccCCcHHHHhh
Confidence 1112344322 25666666666 999999999999887654
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-11 Score=134.11 Aligned_cols=179 Identities=36% Similarity=0.554 Sum_probs=82.2
Q ss_pred CCCCcEEECcCCCCCCCCccccCCCC-CCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEE
Q 003465 148 LNNLVELYLSRSNLNGPIPSTLGHLT-RLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEV 226 (818)
Q Consensus 148 l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 226 (818)
++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|...+.+++|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 344444444444444 3333333332 4455555554444 22233444455555555555544 222222244455555
Q ss_pred EccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC
Q 003465 227 DLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 227 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
++++|++. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++.. ++..++.+++++.|++++|.++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence 55555544 22332233334555555555322 223334445555555555555442 2344455555555555555554
Q ss_pred CCCchhhcCCCCCCeeeccCCcCCCCcC
Q 003465 307 GPIPPTLSHLTRLTTLKLFSNQINGSIP 334 (818)
Q Consensus 307 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 334 (818)
.... +..+.+++.|++++|.+....+
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccc--ccccCccCEEeccCccccccch
Confidence 3222 5555555555555555554333
|
|
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-11 Score=131.03 Aligned_cols=112 Identities=20% Similarity=0.270 Sum_probs=69.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC---CCCcc-hHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~~~~--~~ 755 (818)
|+|||+++++.+||+|||+++........ .....++..|+||| +...+ ..+.|+. ...+. ..
T Consensus 137 p~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~ 216 (316)
T cd05108 137 ARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP 216 (316)
T ss_pred hhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC
Confidence 89999999999999999999987544322 12334567899999 11111 1222221 11111 11
Q ss_pred ---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 ---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
...++....... .+..+...+.+++..|++.+|.+||+|.+|+..+..+.
T Consensus 217 ~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~ 269 (316)
T cd05108 217 ASEISSILEKGERLP---QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 269 (316)
T ss_pred HHHHHHHHhCCCCCC---CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 111111111111 12223456778999999999999999999999998873
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.2e-13 Score=139.31 Aligned_cols=175 Identities=34% Similarity=0.512 Sum_probs=132.1
Q ss_pred CCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEc
Q 003465 269 ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDM 348 (818)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 348 (818)
.--...+|+.|++. .+|..+..+..|+.+.|.+|.+. .+|..++++..|+.|+|+.|+++ .+|..++.++ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33445667777776 56666667777777777777775 56677777777888888888776 5666666665 788888
Q ss_pred CCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCccc
Q 003465 349 SSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428 (818)
Q Consensus 349 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 428 (818)
++|+++ .+|..++..+.|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+. .-.|..||++.|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence 888886 56777777888888888888887 45667788888888888888887 5566666 345788888888887 7
Q ss_pred CCccccCCCCCCEEECcCCcCCcc
Q 003465 429 IPSEIRNLSYLHELDLSLNFISGM 452 (818)
Q Consensus 429 ~p~~l~~l~~L~~L~Ls~N~l~~~ 452 (818)
+|-.|.+|+.|++|-|.+|++...
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCCC
Confidence 888888888888888888888753
|
|
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-11 Score=132.85 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=65.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC----CcchHHHHhcc------------cCCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH----PQEILSLFSST------------SDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~----~~~~l~~~~~~------------~~~~~~~~ 757 (818)
++|+|++.+..+|||||||++.-.........-.--..|+|||-- -+..-+.|+.. .++.....
T Consensus 290 ARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~ 369 (474)
T KOG0194|consen 290 ARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNY 369 (474)
T ss_pred HHHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHH
Confidence 789999999999999999998653221111111234689999911 11111223221 11111111
Q ss_pred ceecccCC-CcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 YILDQRIS-PPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ~~~d~~l~-~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
++...... +.....+...+..+..+...||..+|++||+|.+|.+.++.+
T Consensus 370 ~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~ 420 (474)
T KOG0194|consen 370 EVKAKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEAL 420 (474)
T ss_pred HHHHHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHH
Confidence 11111101 111111223444555666699999999999999999999988
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-13 Score=139.49 Aligned_cols=174 Identities=30% Similarity=0.458 Sum_probs=118.2
Q ss_pred CCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEE
Q 003465 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 100 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 179 (818)
+..-...||+.|.+. .+|..+..+..|..|.|..|.+. .+|..+.++..|.+|||+.|+++ .+|..+..|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 334455667777766 56666777777777777777776 56777777777777777777776 5666666554 67777
Q ss_pred ccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC
Q 003465 180 LSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 180 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
+++|+++ .+|..++.+..|..|+.+.|.+. .+|..++++.+|+.|++..|++.. +|..+..+ .|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-
Confidence 7777776 56666777777777777777776 456667777777777777777653 44445433 4666777777766
Q ss_pred CCCccccCCCCCcEEEccccccC
Q 003465 260 PLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 260 ~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
.+|-.|.++..|++|.|.+|.++
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 55666667777777777777666
|
|
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-11 Score=128.03 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=67.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---ccccccccceeCCC----CCCcchHHHHhccc---------CC-Ccc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPA----KHPQEILSLFSSTS---------DP-HIT- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---~~~~~gt~gy~aPE----~~~~~~l~~~~~~~---------~~-~~~- 755 (818)
|+||++++++.+||+|||+++.+..+... .....++..|+||| ..+....+.|+... .+ ...
T Consensus 136 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~ 215 (284)
T cd05081 136 TRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPP 215 (284)
T ss_pred HhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcc
Confidence 89999999999999999999977543221 12233456799999 22222222332110 00 000
Q ss_pred --ccceecccCC--------------CcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 --LTYILDQRIS--------------PPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 --~~~~~d~~l~--------------~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+.++.... ....+.+......+.+++..|++.+|++||||.||+++|+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~~ 284 (284)
T cd05081 216 AEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAIR 284 (284)
T ss_pred hhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhcC
Confidence 0000011000 0000001122346778999999999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-11 Score=125.32 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=68.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~ 754 (818)
|+||++++++.+|++|||+++........ ......++.|+||| +..+...+.|+. ...+. .
T Consensus 135 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~ 214 (268)
T cd05063 135 ARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM 214 (268)
T ss_pred hhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC
Confidence 89999999999999999999876433211 12233456899999 222222223321 11111 0
Q ss_pred c---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 T---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
. ....+...... +...+....+.+++.+|++.+|++||+|.+|++.|+++
T Consensus 215 ~~~~~~~~i~~~~~~---~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~ 267 (268)
T cd05063 215 SNHEVMKAINDGFRL---PAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL 267 (268)
T ss_pred CHHHHHHHHhcCCCC---CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 0 00111111111 11233456678899999999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-11 Score=124.30 Aligned_cols=114 Identities=14% Similarity=0.192 Sum_probs=68.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhc---------ccCCC--cc--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSS---------TSDPH--IT--L 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~~~~--~~--~ 756 (818)
|+||++|.++.+|++|||+++.............|+.+|+|||. ..+...+.|+. ...+. .. .
T Consensus 134 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 213 (267)
T cd08229 134 PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL 213 (267)
T ss_pred HHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchH
Confidence 89999999999999999999876544333345578999999992 11111222321 11110 00 0
Q ss_pred cceecccCCCcCccc-hHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYILDQRISPPKKQK-IVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~-~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+...........+. .......+.+++.+|++.+|++||+|.+|++.++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 214 YSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred HHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 011110000000000 112334566777899999999999999999998875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.8e-11 Score=122.60 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=69.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCCC---C-CcchHHHHhcc----------cCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPAK---H-PQEILSLFSST----------SDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE~---~-~~~~l~~~~~~----------~~~--~~~~ 756 (818)
|+||++++++++|++|||+++.+...... .....|+..|+|||. . .+...+.|+.. ..+ ....
T Consensus 130 p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~ 209 (262)
T cd05071 130 AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN 209 (262)
T ss_pred cccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCh
Confidence 89999999999999999999877543322 223457788999992 1 12122333311 111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.++.+............+....+.+++..|++.+|++||++.++.+.|+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~ 259 (262)
T cd05071 210 REVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 259 (262)
T ss_pred HHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHH
Confidence 11111111111001123445667889999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.9e-11 Score=125.12 Aligned_cols=115 Identities=15% Similarity=0.188 Sum_probs=70.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhc---------ccCC--Cc--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSS---------TSDP--HI--TL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~~~--~~--~~ 756 (818)
|+||++++++.+|++|||+++.+...........|+..|+|||. ......+.|.. ...+ .. ..
T Consensus 134 p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 213 (267)
T cd08224 134 PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL 213 (267)
T ss_pred hhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccH
Confidence 89999999999999999999876544333345678999999992 11111222321 1111 10 01
Q ss_pred cceecccCCCcCccchH-HHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 757 TYILDQRISPPKKQKIV-QDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~-~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.++.+....+...+.+. .....+.+++..|++.+|++||++.+|+++|+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~ 266 (267)
T cd08224 214 YSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH 266 (267)
T ss_pred HHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence 11111111111101112 33446677888999999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-11 Score=127.39 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=70.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+||++++++++|++|||+++....... ......|+.+|+||| ..+....+.|+. ...+. ..
T Consensus 148 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~ 227 (288)
T cd05093 148 TRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS 227 (288)
T ss_pred cceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999986643321 123345678999999 222222222321 11111 11
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..++++....+.....+......+.+++..|++.+|.+||+|.+|.+.|+.+.
T Consensus 228 ~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~ 280 (288)
T cd05093 228 NNEVIECITQGRVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLA 280 (288)
T ss_pred HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 11111111111110111123345788999999999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-11 Score=124.89 Aligned_cols=113 Identities=13% Similarity=0.197 Sum_probs=68.1
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+||+++.++.+|++|||+++...... .......+++.|+||| ...+...+.|+. ...+ ...
T Consensus 150 p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~ 229 (280)
T cd05049 150 TRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLS 229 (280)
T ss_pred cceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCC
Confidence 899999999999999999998653322 1223445678999999 222112223321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
..+.++....+.....+......+.+++..|++.+|++||++.||+++|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~ 280 (280)
T cd05049 230 NEEVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK 280 (280)
T ss_pred HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence 111111111111101122234567788889999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-11 Score=125.80 Aligned_cols=112 Identities=20% Similarity=0.260 Sum_probs=69.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC---CCcc-hHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK---HPQE-ILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~---~~~~-~l~~~~~----------~~~~~--~~ 755 (818)
|+|||+|+++.+|++|||+++.+..+.. ..+...|+.+|+|||. .+.+ ..+.|+. ...+. ..
T Consensus 137 p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~ 216 (279)
T cd05111 137 ARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR 216 (279)
T ss_pred cceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence 8999999999999999999997643322 2345668889999992 1111 1222321 11111 11
Q ss_pred ---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 ---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+++....... .+..+...+.+++..|++.+|++||+|.|+++.|..+.
T Consensus 217 ~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~ 269 (279)
T cd05111 217 PHEVPDLLEKGERLA---QPQICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMA 269 (279)
T ss_pred HHHHHHHHHCCCcCC---CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence 111111111111 11123345677888999999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-11 Score=123.66 Aligned_cols=111 Identities=15% Similarity=0.181 Sum_probs=66.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC----CcchHHHHhc----------ccCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH----PQEILSLFSS----------TSDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~----~~~~l~~~~~----------~~~~--~~~~~ 757 (818)
|+||++|+++.+|++|||+++...... ....++.+|+|||.. .....+.|.. ...+ .....
T Consensus 130 p~Nili~~~~~~~l~d~g~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~ 206 (256)
T cd05039 130 ARNVLVSEDLVAKVSDFGLAKEASQGQ---DSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK 206 (256)
T ss_pred cceEEEeCCCCEEEccccccccccccc---ccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence 899999999999999999998763321 133456789999921 1111222221 1111 11111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
++............+......+.+++.+|++.+|++||++.+|+++|+.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~ 256 (256)
T cd05039 207 DVVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLALI 256 (256)
T ss_pred HHHHHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence 11110000000011222345677888899999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-11 Score=121.86 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=66.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCC----CCCcchHHHHhc----------ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~ 756 (818)
|+||++++++.+|++|||+++........ .....++++|+||| ..++...+.|+. ...+ ....
T Consensus 121 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~ 200 (250)
T cd05085 121 ARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTN 200 (250)
T ss_pred hheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCH
Confidence 89999999999999999999865433211 12234567899999 222222223321 1111 1110
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
.+.............+......+.+++..|++.+|++||+|.||+++|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 249 (250)
T cd05085 201 QQAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA 249 (250)
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence 0110000000000112223456788999999999999999999999985
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-11 Score=127.29 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=70.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+||++|+++.+||+|||+++...... .......|+..|+||| ..+....+.|+. ...+. ..
T Consensus 151 p~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 230 (291)
T cd05094 151 TRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS 230 (291)
T ss_pred cceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 899999999999999999998664322 1223456788999999 222222222321 11111 11
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..++++....+.....+..+...+.+++.+|++.+|++||+|.+|+++|+++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~ 283 (291)
T cd05094 231 NTEVIECITQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALG 283 (291)
T ss_pred HHHHHHHHhCCCCCCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence 11111111111110112223456778899999999999999999999999884
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.3e-11 Score=122.64 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=68.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~ 756 (818)
|+||++++++.+|++|||+++.+..... ......++.+|+||| ..++...+.|+. ...+ ....
T Consensus 130 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~ 209 (260)
T cd05070 130 SANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNN 209 (260)
T ss_pred cceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCH
Confidence 8999999999999999999987644322 122334667899999 222222222321 1111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.++.+........+.+......+.+++.+|++.+|++||+|.++.+.|+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 259 (260)
T cd05070 210 REVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED 259 (260)
T ss_pred HHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 11111111110101122334567788899999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-11 Score=143.40 Aligned_cols=108 Identities=30% Similarity=0.395 Sum_probs=72.7
Q ss_pred CCCCcEEEcCCCC--CcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCE
Q 003465 100 FPNLESFRIWYSN--ISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177 (818)
Q Consensus 100 l~~L~~L~L~~n~--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 177 (818)
.++|++|-+..|. +.......|..++.|++|||++|.--+.+|+.++.|-+||+|+++++.+. .+|..+.+|++|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 4467777777665 33333345667777777777776555567777777777777777777776 67777777777777
Q ss_pred EEccCCCCCCCCccCCCCCCCCcEEEcccCc
Q 003465 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ 208 (818)
Q Consensus 178 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 208 (818)
|++..+.....+|.....+++|++|.+....
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 7777766554555555567777777766543
|
|
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-11 Score=123.55 Aligned_cols=111 Identities=22% Similarity=0.333 Sum_probs=65.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC---C----cchHHHHhcc---------cCCC--c-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH---P----QEILSLFSST---------SDPH--I- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~---~----~~~l~~~~~~---------~~~~--~- 754 (818)
|+||++++++.+||+|||+++.+...........|+.+|+|||.. . ....+.|+.. ..+. .
T Consensus 134 p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~ 213 (267)
T cd06646 134 GANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLH 213 (267)
T ss_pred HHHEEECCCCCEEECcCccceeecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccc
Confidence 899999999999999999998764332223445789999999921 1 1122333211 1110 0
Q ss_pred ---cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 755 ---TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 755 ---~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
....+...................+.+++.+|++.+|++||++.++++.|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l 266 (267)
T cd06646 214 PMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL 266 (267)
T ss_pred hhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence 01111111111111001111234566788899999999999999998753
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-11 Score=129.09 Aligned_cols=108 Identities=14% Similarity=0.175 Sum_probs=71.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---ccccccccceeCCC----CCCcc-------hHHHHh-----cccCCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPA----KHPQE-------ILSLFS-----STSDPHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---~~~~~gt~gy~aPE----~~~~~-------~l~~~~-----~~~~~~~ 754 (818)
+.|+||-..-.+||+||||.|.+...... +....--+.|.||| ++... .+..|. ...+...
T Consensus 240 ARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~ 319 (1039)
T KOG0199|consen 240 ARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGC 319 (1039)
T ss_pred hhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCC
Confidence 68999999999999999999998654322 12223347899999 22222 222332 1122221
Q ss_pred c---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 755 T---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 755 ~---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
+ +.+.+|.+-. .+.+..|.+.+..|+..||...|++||++.++++.+
T Consensus 320 ~g~qIL~~iD~~er---LpRPk~csedIY~imk~cWah~paDRptFsair~~~ 369 (1039)
T KOG0199|consen 320 RGIQILKNIDAGER---LPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDL 369 (1039)
T ss_pred CHHHHHHhcccccc---CCCCCCChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence 1 2333453322 234667889999999999999999999999998544
|
|
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-10 Score=122.06 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=70.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhcc---------cCC--Ccc--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSST---------SDP--HIT--L 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~~---------~~~--~~~--~ 756 (818)
|+||+++.++.+|++|||+++.............|+..|+|||. ......+.|... ..+ ... .
T Consensus 134 ~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~ 213 (267)
T cd08228 134 PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL 213 (267)
T ss_pred HHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccH
Confidence 89999999999999999999877543333334578899999992 111122233211 111 000 0
Q ss_pred cceecccCCCcCccc-hHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 757 TYILDQRISPPKKQK-IVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~-~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.++.+........+. .......+.+++..||+.+|++||++.+|++.+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~ 266 (267)
T cd08228 214 FSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH 266 (267)
T ss_pred HHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence 111111000001011 1223355778888999999999999999999998875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-11 Score=123.58 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=67.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---ccccccccceeCCCC---CCcc-hHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPAK---HPQE-ILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---~~~~~gt~gy~aPE~---~~~~-~l~~~~~----------~~~~~--~ 754 (818)
|+||++++++.+||+|||+++.+...... .+...++..|+|||. .+.+ ..+.|+. ...+. .
T Consensus 123 p~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~ 202 (257)
T cd05116 123 ARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM 202 (257)
T ss_pred hhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence 89999999999999999999877543221 223345688999991 1111 1222221 11111 1
Q ss_pred c---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 T---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
. ..+.++....... +......+.+++..|++.+|++||+|.+|+++|++.
T Consensus 203 ~~~~~~~~i~~~~~~~~---~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~ 255 (257)
T cd05116 203 KGNEVTQMIESGERMEC---PQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY 255 (257)
T ss_pred CHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence 1 1111222111111 222344566788899999999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-11 Score=123.93 Aligned_cols=114 Identities=13% Similarity=0.199 Sum_probs=69.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCCC---C-CcchHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPAK---H-PQEILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE~---~-~~~~l~~~~~----------~~--~~~~~ 755 (818)
|+||++++++.+||+|||+++........ .....++..|+|||. . +....+.|+. .. +....
T Consensus 141 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~ 220 (273)
T cd05035 141 ARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVE 220 (273)
T ss_pred hheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC
Confidence 89999999999999999999976443221 222345678999992 1 1111122221 11 11111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
-.++.+....+.....+......+.+++.+|++.+|++||+|.||++.|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~ 272 (273)
T cd05035 221 NHEIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI 272 (273)
T ss_pred HHHHHHHHHcCCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 1112211111111111233456778888999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-11 Score=119.30 Aligned_cols=105 Identities=21% Similarity=0.254 Sum_probs=65.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC-C----cc-hHHHHhc---------ccCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH-P----QE-ILSLFSS---------TSDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~-~----~~-~l~~~~~---------~~~~~~~~~~ 758 (818)
|||||||..+.+|++|||++..+.. +-..|.-+|...||||||- | +| -...|+- ..++......
T Consensus 196 PSNILldr~G~vKLCDFGIcGqLv~-SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s 274 (361)
T KOG1006|consen 196 PSNILLDRHGDVKLCDFGICGQLVD-SIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS 274 (361)
T ss_pred hhheEEecCCCEeeecccchHhHHH-HHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH
Confidence 9999999999999999999987643 3345667899999999932 1 22 2344542 2222222222
Q ss_pred eec---------c-cCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHH
Q 003465 759 ILD---------Q-RISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVS 801 (818)
Q Consensus 759 ~~d---------~-~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~ 801 (818)
++| | .+..+. ...+--..+...+-.|+-.+..+||...++.
T Consensus 275 vfeql~~Vv~gdpp~l~~~~--~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk 325 (361)
T KOG1006|consen 275 VFEQLCQVVIGDPPILLFDK--ECVHYSFSMVRFINTCLIKDRSDRPKYDDLK 325 (361)
T ss_pred HHHHHHHHHcCCCCeecCcc--cccccCHHHHHHHHHHhhcccccCcchhhhh
Confidence 222 1 111111 1111223455566699999999999988754
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-11 Score=129.90 Aligned_cols=115 Identities=20% Similarity=0.278 Sum_probs=68.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCC-cchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||+|+++.+||+|||+++....+.. ......++..|+||| ... +...+.|+. ...+ ...
T Consensus 202 p~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~ 281 (338)
T cd05102 202 ARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ 281 (338)
T ss_pred cceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999987643322 123345778999999 121 111122221 1111 111
Q ss_pred ccceecccC-CCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRI-SPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l-~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+.+...+ .+.....+......+.+++..|++.+|++||+|.||++.|+++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~ 335 (338)
T cd05102 282 INEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALVEILGDLL 335 (338)
T ss_pred ccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 111000011 00000011223345778999999999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-11 Score=122.36 Aligned_cols=109 Identities=20% Similarity=0.307 Sum_probs=65.1
Q ss_pred ccccccCC-CCcccccccccceeccCC---CCCccccccccceeCCC--C-CCcc--hHHHHhcccC-----------CC
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSD---SSNRTLIAGTYRYIAPA--K-HPQE--ILSLFSSTSD-----------PH 753 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~---~~~~~~~~gt~gy~aPE--~-~~~~--~l~~~~~~~~-----------~~ 753 (818)
++|||+|. ++.+||||||+|+..... ........||+.||||| + ..+. ..+.|+.... .+
T Consensus 145 ~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~ 224 (313)
T KOG0198|consen 145 PANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSE 224 (313)
T ss_pred cceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchh
Confidence 89999999 799999999999987631 12234688999999999 2 1111 4455653221 00
Q ss_pred --cccc---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 754 --ITLT---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 754 --~~~~---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
.... .+......+...+.-.++... ....|.+.+|++|||+.+.++.--
T Consensus 225 ~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~---Fl~~C~~~~p~~Rpta~eLL~hpf 278 (313)
T KOG0198|consen 225 FFEEAEALLLIGREDSLPEIPDSLSDEAKD---FLRKCFKRDPEKRPTAEELLEHPF 278 (313)
T ss_pred hcchHHHHHHHhccCCCCCCCcccCHHHHH---HHHHHhhcCcccCcCHHHHhhChh
Confidence 0000 000011111110111233444 445999999999999999886543
|
|
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-11 Score=122.55 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=67.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCCC----CCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||++++++.++++|||+++....... ......++..|+|||. .++...+.|+. ...+. ...
T Consensus 130 p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~ 209 (260)
T cd05067 130 AANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN 209 (260)
T ss_pred HHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCCh
Confidence 8999999999999999999987753322 2234456789999991 11111122221 11111 111
Q ss_pred cce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 757 TYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 757 ~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.++ ++...... .+......+.+++.+|++.+|++||++.++...|+.
T Consensus 210 ~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 259 (260)
T cd05067 210 PEVIQNLERGYRMP---RPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED 259 (260)
T ss_pred HHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence 111 11111111 112223457788889999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-11 Score=124.39 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=67.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC---CCC-cchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+|||++.++++|++|||.++....... ......++..|+||| ..+ ....+.|+. ...+. ...
T Consensus 135 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~ 214 (266)
T cd05064 135 AHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG 214 (266)
T ss_pred HhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH
Confidence 8999999999999999998775432211 122344678899999 111 112222321 11111 111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+++...-.....+.+..+...+.+++..||+.+|++||+|.++.+.|.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~ 265 (266)
T cd05064 215 QDVIKAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM 265 (266)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence 111111001101011334556678899999999999999999999998754
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-11 Score=125.20 Aligned_cols=113 Identities=14% Similarity=0.145 Sum_probs=67.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCCC----CCcchHHHHhcc------------cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPAK----HPQEILSLFSST------------SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE~----~~~~~l~~~~~~------------~~~~~~ 755 (818)
|+||++++++++|++|||+++........ .....++.+|+|||. ..+...+.|+.. .+....
T Consensus 147 p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~ 226 (277)
T cd05062 147 ARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMS 226 (277)
T ss_pred hheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 89999999999999999999866433211 123456789999992 222222233211 111111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
..++.+..........+......+.+++.+|++.+|++||++.|+++.|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~ 277 (277)
T cd05062 227 NEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE 277 (277)
T ss_pred HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence 111111111110001122234467788899999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-11 Score=123.50 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=70.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCCCC----CcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPAKH----PQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE~~----~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+|||++++..+|++|||+++.+...... .....++..|+|||.. .+...+.|+. ...+. ..
T Consensus 137 p~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~ 216 (279)
T cd05109 137 ARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP 216 (279)
T ss_pred cceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 89999999999999999999987543221 2233456789999921 1112222321 11111 00
Q ss_pred ---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCc
Q 003465 756 ---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYL 810 (818)
Q Consensus 756 ---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~ 810 (818)
....+...... +.+......+.+++..|++.+|++||++.++++.|+.+.+.
T Consensus 217 ~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~ 271 (279)
T cd05109 217 AREIPDLLEKGERL---PQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARD 271 (279)
T ss_pred HHHHHHHHHCCCcC---CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence 01111111111 11223345677888899999999999999999999888443
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-11 Score=123.84 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=97.0
Q ss_pred HHHHHhhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh--------------------------
Q 003465 643 IIRATEDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA-------------------------- 691 (818)
Q Consensus 643 l~~at~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~-------------------------- 691 (818)
+..++.++.....+| |.||+|.. .++..||+|..........+.|.+|+
T Consensus 3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l 82 (268)
T cd06624 3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKI 82 (268)
T ss_pred cccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEE
Confidence 345667777777777 89999985 46788999976554444445566665
Q ss_pred ------------------------------------------------cc---ccccccCC-CCcccccccccceeccCC
Q 003465 692 ------------------------------------------------HV---FNNILLNS-EFEAFFGNFGVARLLNSD 719 (818)
Q Consensus 692 ------------------------------------------------h~---~~NILLd~-~~~~ki~DFGla~~~~~~ 719 (818)
|+ |+||++|. +..+||+|||+++.....
T Consensus 83 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~ 162 (268)
T cd06624 83 FMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGI 162 (268)
T ss_pred EEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecccC
Confidence 22 78999987 679999999999876433
Q ss_pred CCCccccccccceeCCCC---C---CcchHHHHhcc---------cCCCcccc----ceecccCCCcCccchHHHHHHHH
Q 003465 720 SSNRTLIAGTYRYIAPAK---H---PQEILSLFSST---------SDPHITLT----YILDQRISPPKKQKIVQDIALAS 780 (818)
Q Consensus 720 ~~~~~~~~gt~gy~aPE~---~---~~~~l~~~~~~---------~~~~~~~~----~~~d~~l~~~~~~~~~~~~~~~~ 780 (818)
........|+.+|+|||. . .....+.|+.. ..+..... ..............+......+.
T Consensus 163 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (268)
T cd06624 163 NPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAK 242 (268)
T ss_pred CCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHH
Confidence 333334568999999991 1 11122333211 11110000 00000000000011222334566
Q ss_pred HHHHhccCCCCCCCCChHHHHH
Q 003465 781 IVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 781 ~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.++.+|++.+|++||+|.||++
T Consensus 243 ~li~~~l~~~p~~Rpt~~~ll~ 264 (268)
T cd06624 243 NFILRCFEPDPDKRASAHDLLQ 264 (268)
T ss_pred HHHHHHcCCCchhCCCHHHHHh
Confidence 7788999999999999999876
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-10 Score=121.45 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=68.5
Q ss_pred ccccccCCCCcccccccccceeccCCC----CCccccccccceeCCCC---CC-cchHHHHhc----------ccCC--C
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS----SNRTLIAGTYRYIAPAK---HP-QEILSLFSS----------TSDP--H 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~----~~~~~~~gt~gy~aPE~---~~-~~~l~~~~~----------~~~~--~ 753 (818)
|+|||+++++.+|++|||+++.+.... .......++..|+|||. .+ ....+.|.. ...+ .
T Consensus 126 ~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~ 205 (262)
T cd05058 126 ARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 205 (262)
T ss_pred cceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 899999999999999999998664321 11234567788999992 11 112223321 1111 1
Q ss_pred ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 754 ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 754 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....+.......+.....+......+.+++..|++.+|++||++.+|+++|+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~ 259 (262)
T cd05058 206 VDSFDITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQI 259 (262)
T ss_pred CCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 111111111111111011112234677899999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-11 Score=133.80 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=66.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCC-cchHHHHhcc-----------cCCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHP-QEILSLFSST-----------SDPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~-----------~~~~~~~ 756 (818)
|+|||+|+++.+||+|||+++.+..... .....+||++|+||| ... +...+.|+.. .+.....
T Consensus 197 p~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~ 276 (478)
T PTZ00267 197 SANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ 276 (478)
T ss_pred HHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 8999999999999999999997754322 234567999999999 221 1123334311 1111111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+++...+.+...+.+......+.+++..|++.+|++||++.+++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~ 322 (478)
T PTZ00267 277 REIMQQVLYGKYDPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLH 322 (478)
T ss_pred HHHHHHHHhCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence 1222222211110111122345667888999999999999999864
|
|
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-11 Score=121.27 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=67.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHh---------cccCCC--ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFS---------STSDPH--ITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~---------~~~~~~--~~~~~ 758 (818)
++||++++++++|++|||+++.+...........|+..|+||| ..+ ....+.|. ....+. ....+
T Consensus 129 ~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 208 (256)
T cd08529 129 SLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGA 208 (256)
T ss_pred cceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999997755443344567899999999 111 11112222 111111 11111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.............+......+.+++.+|++.+|++||+|.++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~ 253 (256)
T cd08529 209 LILKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRN 253 (256)
T ss_pred HHHHHHcCCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence 111111111101122334567788889999999999999999863
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-10 Score=119.52 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=67.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
++||++|+++.+|++|||+++....... ......++.+|+||| ..++...+.|+. ...+. ...
T Consensus 130 ~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~ 209 (260)
T cd05069 130 AANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN 209 (260)
T ss_pred cceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 8999999999999999999987643321 122345678999999 222222222321 11111 000
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.+..+........+.+......+.+++.+|++.+|++||+|.+|.+.|+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 210 REVLEQVERGYRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred HHHHHHHHcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 01111111110001122334556778889999999999999999999975
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-11 Score=133.22 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=62.8
Q ss_pred ccccccCC-----CCcccccccccceeccCCCCC---ccccccccceeCCC-------CCCcchHHHH------h--ccc
Q 003465 694 FNNILLNS-----EFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPA-------KHPQEILSLF------S--STS 750 (818)
Q Consensus 694 ~~NILLd~-----~~~~ki~DFGla~~~~~~~~~---~~~~~gt~gy~aPE-------~~~~~~l~~~------~--~~~ 750 (818)
|+|||++. ..+|+|||||++|.+..+.+. ..++.||-||+||| .+++| +-.. + ...
T Consensus 634 PQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avD-iFslGCvfyYvltgG~ 712 (903)
T KOG1027|consen 634 PQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVD-IFSLGCVFYYVLTGGS 712 (903)
T ss_pred CceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccc-hhhcCceEEEEecCCc
Confidence 99999976 368999999999998766443 45788999999999 23333 1111 0 001
Q ss_pred CCCcc----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHH
Q 003465 751 DPHIT----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVS 801 (818)
Q Consensus 751 ~~~~~----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~ 801 (818)
-+.+. -..|+...-.-.......++ ...+++-..++.+|..||++.+|+
T Consensus 713 HpFGd~~~R~~NIl~~~~~L~~L~~~~d~--eA~dLI~~ml~~dP~~RPsa~~VL 765 (903)
T KOG1027|consen 713 HPFGDSLERQANILTGNYTLVHLEPLPDC--EAKDLISRMLNPDPQLRPSATDVL 765 (903)
T ss_pred cCCCchHHhhhhhhcCccceeeeccCchH--HHHHHHHHhcCCCcccCCCHHHHh
Confidence 11111 01111111100000001112 555677799999999999999987
|
|
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-10 Score=120.86 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=66.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~~ 757 (818)
|+||++++++.+|++|||+++...... ....++.+|+||| ..++...+.|.. ...+ .....
T Consensus 130 p~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~ 206 (256)
T cd05082 130 ARNVLVSEDNVAKVSDFGLTKEASSTQ---DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK 206 (256)
T ss_pred hheEEEcCCCcEEecCCccceeccccC---CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 899999999999999999998653322 2344567899999 112111222321 1111 11111
Q ss_pred ceecccCC-CcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 YILDQRIS-PPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ~~~d~~l~-~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
++. +.+. ......+..+...+.+++.+|++.+|++||+|.++++.|+++
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~ 256 (256)
T cd05082 207 DVV-PRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI 256 (256)
T ss_pred HHH-HHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence 111 1110 000011223345677888899999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-10 Score=120.21 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=65.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCCC----CCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||++++++.+|++|||+++........ .....++.+|+|||. ..+...+.|+. ...+. ...
T Consensus 128 p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~ 207 (256)
T cd05059 128 ARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN 207 (256)
T ss_pred HhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCH
Confidence 89999999999999999999876433211 122334568999991 11111222321 11111 000
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
.+.............+......+.+++.+|++.+|++||+|.||++.|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l~ 256 (256)
T cd05059 208 SEVVESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQLT 256 (256)
T ss_pred HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHhC
Confidence 1111110000000111223456788999999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-10 Score=121.24 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=68.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCCCC----CcchHHHHhcc----------cCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPAKH----PQEILSLFSST----------SDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE~~----~~~~l~~~~~~----------~~~--~~~ 755 (818)
|+|||+++++.+||+|||+++........ .....+++.|+|||.. .+...+.|+.. ..+ ...
T Consensus 140 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 219 (272)
T cd05075 140 ARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE 219 (272)
T ss_pred hhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 89999999999999999999976443221 1233467789999921 11122223211 111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+....+.....+......+.+++..|++.+|++||+|.++++.|+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~ 271 (272)
T cd05075 220 NSEIYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA 271 (272)
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 1111111111110011222345577888999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-10 Score=123.88 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=68.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHhcc------------cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFSST------------SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~~~------------~~~~~~ 755 (818)
|+||++++++.+|++|||+++.+..... ......++.+|+|||. ..+...+.|+.. .+....
T Consensus 160 p~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 239 (293)
T cd05053 160 ARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP 239 (293)
T ss_pred eeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCC
Confidence 8999999999999999999997654321 1233446788999992 111112222211 111111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+....+...+.+..+...+.+++..|++.+|++||+|.||++.|+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~ 291 (293)
T cd05053 240 VEELFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRM 291 (293)
T ss_pred HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHh
Confidence 1111111111100011223345677899999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.5e-11 Score=125.42 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=63.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHh---------cccCCCc--c---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFS---------STSDPHI--T--- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~---------~~~~~~~--~--- 755 (818)
|+|||+|+++.+||+|||+++...... ......||.+|+||| +..+...+.|+ ....+.. .
T Consensus 130 p~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~ 208 (285)
T cd05631 130 PENILLDDRGHIRISDLGLAVQIPEGE-TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERV 208 (285)
T ss_pred HHHEEECCCCCEEEeeCCCcEEcCCCC-eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcch
Confidence 899999999999999999998764332 223457999999999 11111122232 1111111 0
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-----hHHHHH
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-----MQRVSQ 802 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-----m~~V~~ 802 (818)
..+.++..+.......+.+....+.+++..|++.+|++||+ +.++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~ 260 (285)
T cd05631 209 KREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQ 260 (285)
T ss_pred hHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence 01112222211110111122234567788999999999997 777775
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-10 Score=119.18 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=65.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||+++.+..+||+|||+++........ .....++.+|+||| ..+....+.|.. ...+. ...
T Consensus 128 p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~ 207 (256)
T cd05112 128 ARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN 207 (256)
T ss_pred cceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH
Confidence 89999999999999999999866432211 12334567999999 222222222321 11111 111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
.++++....+.....+......+.+++.+|++.+|++||+|.+|+++|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~ 256 (256)
T cd05112 208 SEVVETINAGFRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQLA 256 (256)
T ss_pred HHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence 1111111100000001112356778999999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-10 Score=120.21 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=65.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCCCcc--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDPHIT--LTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~~~~--~~~ 758 (818)
|+||++++++.+|++|||+++.+...........|+.+|+||| ..+....+.|+. ...+... ...
T Consensus 129 p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~ 208 (277)
T cd06642 129 AANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR 208 (277)
T ss_pred hheEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh
Confidence 8999999999999999999987654333333456899999999 111112223321 1111100 000
Q ss_pred ---eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ---ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ---~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.+........ .......+.+++..|++.+|++||+|.+|++.
T Consensus 209 ~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06642 209 VLFLIPKNSPPTL---EGQYSKPFKEFVEACLNKDPRFRPTAKELLKH 253 (277)
T ss_pred HHhhhhcCCCCCC---CcccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence 0111111111 12234557788889999999999999999973
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=120.83 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=66.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCCC----CCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||++++++.+||+|||+++........ .....++..|+|||. ......+.|+. ...+. ...
T Consensus 128 p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~ 207 (256)
T cd05113 128 ARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNN 207 (256)
T ss_pred cceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCH
Confidence 89999999999999999999876443221 223346788999992 11112222321 11111 111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
.++.+..........+......+.+++.+|++.+|++||++.++++.|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~ 256 (256)
T cd05113 208 SETVEKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE 256 (256)
T ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence 1111111111110011122356678888999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-10 Score=122.28 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=68.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCCC---C----Ccc------hHHHHhcccCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPAK---H----PQE------ILSLFSSTSDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE~---~----~~~------~l~~~~~~~~~~~--- 754 (818)
|+||++++++.+|++|||+++....... ......++..|+|||. . ..| .+.++.....+..
T Consensus 135 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~ 214 (283)
T cd05080 135 ARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPP 214 (283)
T ss_pred hheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCc
Confidence 8999999999999999999987654322 1123346678999991 1 111 1111111111110
Q ss_pred -cccceecccCCC-------------cCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 755 -TLTYILDQRISP-------------PKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 755 -~~~~~~d~~l~~-------------~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
...+..+..... ...+.+......+.+++..|++.+|++||+|++|+++|+++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~ 282 (283)
T cd05080 215 KKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH 282 (283)
T ss_pred chhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence 011111111100 000011223456788999999999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-10 Score=120.94 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=67.2
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCCC----CCcchHHHHhc----------ccCCC--c-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPH--I- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~--~- 754 (818)
|+|||+|+++.+|++|||+++...... .......++.+|+|||. ..+...+.|+. ...+. .
T Consensus 152 p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~ 231 (283)
T cd05090 152 ARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS 231 (283)
T ss_pred cceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC
Confidence 899999999999999999998764322 12234456788999992 11112223321 11111 0
Q ss_pred --cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 755 --TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 755 --~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
...+.++...... .+......+.+++..|++.+|++||++.+|.++|..
T Consensus 232 ~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05090 232 NQEVIEMVRKRQLLP---CSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS 282 (283)
T ss_pred HHHHHHHHHcCCcCC---CCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence 0111111111111 122234456778889999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-10 Score=122.81 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=68.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHhcc------------cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFSST------------SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~~~------------~~~~~~ 755 (818)
|+||++++++++|++|||+++....... ......++..|+|||. ..+...+.|+.. .+....
T Consensus 147 p~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~ 226 (288)
T cd05061 147 ARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLS 226 (288)
T ss_pred hheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999986643221 1223346788999992 111122233211 111111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+....+.....+..+...+.+++..|++.+|++||+|.++++.|++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~ 278 (288)
T cd05061 227 NEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDD 278 (288)
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence 1112111111111011222345677888899999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-11 Score=127.46 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=62.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHh---------cccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFS---------STSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~---------~~~~~--~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++............+||++|+||| ..+.+ ..+.|+ ....+ .....+
T Consensus 121 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~ 200 (312)
T cd05585 121 PENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNE 200 (312)
T ss_pred HHHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHH
Confidence 8999999999999999999986544333445678999999999 11111 112222 11111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
+....+.... ..+......+.++...|++.+|++||++..+.+.
T Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~ 244 (312)
T cd05585 201 MYRKILQEPL-RFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEI 244 (312)
T ss_pred HHHHHHcCCC-CCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHH
Confidence 1111111111 0111122345567779999999999865444333
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-11 Score=121.59 Aligned_cols=42 Identities=33% Similarity=0.484 Sum_probs=35.5
Q ss_pred ccccccCCC------CcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSE------FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~------~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||||+.. -..||||||+||.+... ....+.+||+-|||||
T Consensus 137 PQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~-~~a~tlcGSplYMAPE 184 (429)
T KOG0595|consen 137 PQNILLSTTARNDTSPVLKIADFGFARFLQPG-SMAETLCGSPLYMAPE 184 (429)
T ss_pred cceEEeccCCCCCCCceEEecccchhhhCCch-hHHHHhhCCccccCHH
Confidence 999999875 46799999999998643 3445789999999999
|
|
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-10 Score=120.50 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=67.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---ccccccccceeCCC----CCCcchHHHHhc----------ccCC--Cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~ 754 (818)
|+|||+++++.+|++|||+++........ .....++..|+||| +.++...+.|+. ...+ ..
T Consensus 134 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~ 213 (267)
T cd05066 134 ARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEM 213 (267)
T ss_pred hhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccC
Confidence 89999999999999999999977543221 12233467899999 222222222321 1111 11
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+..+........+........+.+++..|++.+|.+||+|.+|++.|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 266 (267)
T cd05066 214 SNQDVIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL 266 (267)
T ss_pred CHHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence 01111111111100011222345667888899999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-10 Score=121.79 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=35.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+|++|||+++..... .......||..|+|||
T Consensus 138 p~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE 179 (290)
T cd07862 138 PQNILVTSSGQIKLADFGLARIYSFQ-MALTSVVVTLWYRAPE 179 (290)
T ss_pred HHHEEEcCCCCEEEccccceEeccCC-cccccccccccccChH
Confidence 89999999999999999999876443 2334567999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-10 Score=121.81 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=68.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCCCc--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPHI--T 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~~--~ 755 (818)
|+||++++++.+||+|||+++.+..+.. ......++..|+||| ..++...+.|+. ...+.. .
T Consensus 145 p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~ 224 (280)
T cd05043 145 ARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEID 224 (280)
T ss_pred HhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCC
Confidence 8999999999999999999987643321 122345678899999 222222233321 111110 0
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++...............+...+.+++.+|++.+|++||++.+|++.|+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~ 276 (280)
T cd05043 225 PFEMAAYLKDGYRLAQPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDF 276 (280)
T ss_pred HHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 0111100000000011222345677889999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-10 Score=119.97 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=67.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~ 754 (818)
|+|||++.+..+|++|||+++....+... .+...+++.|+||| .......+.|+. ...+. .
T Consensus 123 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~ 202 (257)
T cd05115 123 ARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKM 202 (257)
T ss_pred hheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcC
Confidence 89999999999999999999876443221 22333467899999 111111222321 11111 1
Q ss_pred cccce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++ +...... +.+..+...+.+++..||+.+|++||+|.+|.+.|+.+
T Consensus 203 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~ 255 (257)
T cd05115 203 KGPEVMSFIEQGKRL---DCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY 255 (257)
T ss_pred CHHHHHHHHHCCCCC---CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence 01111 1111111 11223345666788899999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.3e-10 Score=117.36 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=67.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhc---------ccCCC--ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSS---------TSDPH--ITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~~~~--~~~~~ 758 (818)
|+||++++++++|++|||+++.............|+..|+|||. .+....+.|+. ...+. ....+
T Consensus 129 p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~ 208 (277)
T cd06640 129 AANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMR 208 (277)
T ss_pred hhhEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHh
Confidence 89999999999999999999877544333344578999999992 22222233321 11111 00001
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
....................+.+++..|++.+|++||+|.+|++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06640 209 VLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH 253 (277)
T ss_pred HhhhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence 111000011111133455677889999999999999999999754
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-10 Score=121.22 Aligned_cols=108 Identities=22% Similarity=0.273 Sum_probs=64.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC--------Ccc-hHHHHhcc---------cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH--------PQE-ILSLFSST---------SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~--------~~~-~l~~~~~~---------~~~~~~ 755 (818)
++||+++++..+||+|||+++.............|+.+|+|||.. ..+ ..+.|... ..+...
T Consensus 139 ~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~ 218 (272)
T cd06637 139 GQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCD 218 (272)
T ss_pred HHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence 789999999999999999998765433334456799999999911 111 23333211 111100
Q ss_pred ccce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LTYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.... ......... .........+.+++.+|++.+|.+||++.+|++
T Consensus 219 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~ 268 (272)
T cd06637 219 MHPMRALFLIPRNPAPR-LKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK 268 (272)
T ss_pred cCHHHHHHHHhcCCCCC-CCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence 0000 000000000 001122345677888999999999999999875
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-10 Score=117.39 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=65.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCc--cccccccceeCCCC----CCcchHHHHhc----------ccCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNR--TLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~--~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~~--- 754 (818)
|+||+++.++++|++|||+++......... ....++..|+|||. ..+...+.|+. ...+..
T Consensus 122 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~ 201 (252)
T cd05084 122 ARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLS 201 (252)
T ss_pred hheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccC
Confidence 899999999999999999998654321111 12234567999992 11112222321 111110
Q ss_pred --cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 755 --TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 755 --~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.....++....... +......+.+++..|++.+|++||+|.+|.++|+.
T Consensus 202 ~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~ 252 (252)
T cd05084 202 NQQTREAIEQGVRLPC---PELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQS 252 (252)
T ss_pred HHHHHHHHHcCCCCCC---cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhC
Confidence 01111111111111 22334567788889999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-10 Score=121.61 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=35.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++.............||+.|+|||
T Consensus 131 p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE 173 (303)
T cd07869 131 PQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPD 173 (303)
T ss_pred HHHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCChH
Confidence 8999999999999999999986543333334567899999999
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-10 Score=121.30 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=67.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhcc----------cCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSST----------SDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~~----------~~~--~~~ 755 (818)
|+||++++++.+|++|||+++.+..... ......++..|+||| .......+.|+.. ..+ ...
T Consensus 158 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~ 237 (288)
T cd05050 158 TRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA 237 (288)
T ss_pred HhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 8899999999999999999986543221 122334567899999 2222222233211 111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
..+++.....+.....+......+.+++.+|++.+|++||+|.|+++.|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~ 288 (288)
T cd05050 238 HEEVIYYVRDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR 288 (288)
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence 111111100011001112234567889999999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-10 Score=120.75 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=68.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHhcc------------cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFSST------------SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~~~------------~~~~~~ 755 (818)
|+||++++++.+|++|||+++.+..... ......|+.+|+|||. .++...+.|+.. .+....
T Consensus 147 p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 226 (277)
T cd05032 147 ARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLS 226 (277)
T ss_pred hheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCC
Confidence 8999999999999999999987643321 2234557889999991 111112223211 111111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
..++.+..........+......+.+++..|++.+|++||++.++++.|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 277 (277)
T cd05032 227 NEEVLKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLKD 277 (277)
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence 111111111111101122335567789999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-11 Score=117.49 Aligned_cols=128 Identities=30% Similarity=0.304 Sum_probs=58.5
Q ss_pred CCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEc
Q 003465 197 TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSL 276 (818)
Q Consensus 197 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 276 (818)
+.|++|||++|.|+ .+..+..-++.++.|++++|.+... ..+..+++|+.|||++|.++ .+..+-..+.++++|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 44555555555554 2333344445555555555555421 22445555555555555544 22223334455555555
Q ss_pred cccccCCcCCcccCCCCCCCEEEccCCcCCCC-CchhhcCCCCCCeeeccCCcCC
Q 003465 277 NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGP-IPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 277 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
+.|.+... ..++.+-+|..||+++|++... -...++++|.|+.+.|.+|.+.
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55554422 2234444555555555554321 1122344444444444444443
|
|
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.9e-11 Score=125.83 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=62.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhcccC---------C--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSSTSD---------P--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~~~---------~--~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++............+||+.|+||| ..+ ....+.|+.+.. + ......
T Consensus 123 p~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~ 202 (323)
T cd05571 123 LENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK 202 (323)
T ss_pred HHHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHH
Confidence 8999999999999999999986433333344567999999999 111 112333432211 1 110001
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+......... ..+......+.++...|++.||++|| +..++++
T Consensus 203 ~~~~~~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~ 250 (323)
T cd05571 203 LFELILMEEI-RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME 250 (323)
T ss_pred HHHHHHcCCC-CCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence 1110000000 00111223455677799999999999 7888764
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-10 Score=118.64 Aligned_cols=108 Identities=21% Similarity=0.278 Sum_probs=67.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCCC--cccc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDPH--ITLT- 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~~--~~~~- 757 (818)
+.||++++++.+|++|||+++...... ..+...|+..|+||| .......+.|.. ...+. ....
T Consensus 142 ~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~ 220 (269)
T cd08528 142 PNNIMLGEDDKVTITDFGLAKQKQPES-KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLS 220 (269)
T ss_pred HHHEEECCCCcEEEecccceeeccccc-ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHH
Confidence 789999999999999999998765433 334567899999999 212222223321 11111 1000
Q ss_pred ---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 758 ---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 758 ---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
.+.+....... .......+.+++.+|++.+|++||+|.||..+++
T Consensus 221 ~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~ 268 (269)
T cd08528 221 LATKIVEAVYEPLP---EGMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS 268 (269)
T ss_pred HHHHHhhccCCcCC---cccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence 11111111111 1112345667888999999999999999999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-11 Score=117.58 Aligned_cols=135 Identities=30% Similarity=0.311 Sum_probs=97.7
Q ss_pred hcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCC
Q 003465 313 LSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLK 392 (818)
Q Consensus 313 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 392 (818)
+..+..|+++||++|.|+ .+..+..-.|.++.|++++|.+... ..+..+++|+.|||++|.++. +..+-..+.+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEe
Confidence 344567778888888776 4555666677888888888887633 236778888888888888773 333445667888
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEecccCcCccc-CCccccCCCCCCEEECcCCcCCccC
Q 003465 393 FLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR-IPSEIRNLSYLHELDLSLNFISGMT 453 (818)
Q Consensus 393 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~ 453 (818)
.|.|++|.+... +.+..+-+|..||+++|+|... -...++++|.|+.+.|.+|++.+..
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 888888887633 4567778888899999988632 1245788888999889898887653
|
|
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-10 Score=121.52 Aligned_cols=105 Identities=19% Similarity=0.236 Sum_probs=62.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhc---------ccCCCccc----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSS---------TSDPHITL---- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~~~~~~~---- 756 (818)
|+||+++.++.+||+|||+++..... ..+...||..|+|||. ..+...+.|+. ...+....
T Consensus 123 p~Nill~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~ 200 (279)
T cd06619 123 PSNMLVNTRGQVKLCDFGVSTQLVNS--IAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQ 200 (279)
T ss_pred HHHEEECCCCCEEEeeCCcceecccc--cccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccc
Confidence 89999999999999999999876432 2334579999999992 11111222321 11111000
Q ss_pred -----cce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 757 -----TYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 757 -----~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.+. .++...... .......+.+++..|++.+|++||++.||++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~ 253 (279)
T cd06619 201 GSLMPLQLLQCIVDEDPPVLP---VGQFSEKFVHFITQCMRKQPKERPAPENLMDH 253 (279)
T ss_pred cccchHHHHHHHhccCCCCCC---CCcCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 000 000000000 01122346678889999999999999998764
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-10 Score=118.56 Aligned_cols=115 Identities=20% Similarity=0.252 Sum_probs=68.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---ccccccccceeCCCC----CCcchHHHHh---------c-ccCCCc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPAK----HPQEILSLFS---------S-TSDPHI-- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---~~~~~gt~gy~aPE~----~~~~~l~~~~---------~-~~~~~~-- 754 (818)
|+||++++++.+|++|||+++........ .....++..|+|||. ......+.|+ . ...+..
T Consensus 123 p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~ 202 (257)
T cd05060 123 ARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEM 202 (257)
T ss_pred cceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccC
Confidence 89999999999999999999877543322 122334578999992 1111111221 1 111111
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
...++..........+.+......+.+++.+|++.+|++||++.+|++.|+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~ 256 (257)
T cd05060 203 KGAEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP 256 (257)
T ss_pred CHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence 001111110011110112233456778999999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-10 Score=119.60 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=67.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~ 756 (818)
|+||+++++..+|++|||+++.+..... ......++..|+||| ..++...+.|+. ...+ ....
T Consensus 131 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~ 210 (261)
T cd05034 131 ARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTN 210 (261)
T ss_pred hheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 8999999999999999999987753211 112233567899999 222222222321 1111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
...++........+.+......+.+++.+|++.+|++||++.++.+.|+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~ 260 (261)
T cd05034 211 REVLEQVERGYRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED 260 (261)
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence 11111111110001122234567788899999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-10 Score=120.75 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=66.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHh---------c-ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFS---------S-TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~---------~-~~~~~--~~ 755 (818)
|+|||+++++++||+|||+++....... ......+++.|+||| ..++...+.|+ . ...+. ..
T Consensus 150 p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 229 (280)
T cd05092 150 TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLS 229 (280)
T ss_pred HhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCC
Confidence 8999999999999999999986643221 122334678899999 22222122232 1 11111 10
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
..+.++....+.....+......+.+++..|++.+|++||++.+|.+.|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~ 280 (280)
T cd05092 230 NTEAIECITQGRELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA 280 (280)
T ss_pred HHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence 011111111111101122234556788889999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-10 Score=120.01 Aligned_cols=43 Identities=30% Similarity=0.345 Sum_probs=35.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE 736 (818)
|+||+++.++.+||+|||+++....... ......||.+|+|||
T Consensus 128 p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE 171 (287)
T cd07848 128 PENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPE 171 (287)
T ss_pred HHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcH
Confidence 8999999999999999999987754322 234567999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-10 Score=122.35 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=69.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHhcc----------c--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFSST----------S--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~~~----------~--~~~~~ 755 (818)
|+||++++++.+|++|||+++....... .+....++..|+|||. ..+...+.|+.. . +....
T Consensus 165 p~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~ 244 (304)
T cd05101 165 ARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP 244 (304)
T ss_pred cceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC
Confidence 8999999999999999999997754321 2233456788999991 111112223211 1 11111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..++.+..........+..+...+.+++.+|++.+|++||+|.||++.|+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~ 297 (304)
T cd05101 245 VEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRIL 297 (304)
T ss_pred HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHH
Confidence 11211111111100112234456777888999999999999999999998873
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-10 Score=119.88 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=67.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhcccC---------CCcc-c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSSTSD---------PHIT-L 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~~~~---------~~~~-~ 756 (818)
|+||++|.++.+|++|||+++....... ......++..|+||| ..+....+.|..... +... .
T Consensus 137 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~ 216 (284)
T cd05038 137 ARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPP 216 (284)
T ss_pred HHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCccccc
Confidence 8999999999999999999987753322 122334567799999 111111223332110 0000 0
Q ss_pred cc-------------------eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TY-------------------ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~-------------------~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.. .+...... +.+..+...+.+++.+|++.+|++||+|.||+++|+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i 283 (284)
T cd05038 217 AEFLRMIGIAQGQMIVTRLLELLKEGERL---PRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL 283 (284)
T ss_pred chhccccccccccccHHHHHHHHHcCCcC---CCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence 00 00000100 11223345678899999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-10 Score=118.76 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=65.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcc---------cCCC--cc-cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPH--IT-LT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~--~~-~~ 757 (818)
|+||++++++.+||+|||+++.............|++.|+||| ..+....+.|+.. ..+. .. ..
T Consensus 143 p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~ 222 (297)
T cd06656 143 SDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR 222 (297)
T ss_pred HHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcch
Confidence 8999999999999999999987654433334557899999999 2222223334311 1111 00 00
Q ss_pred ceecccCCCc-CccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPP-KKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~-~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
........+. ....+......+.+++..|++.+|++||+|.+|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 268 (297)
T cd06656 223 ALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQ 268 (297)
T ss_pred heeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0000000010 00111222334567788999999999999999986
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-10 Score=118.49 Aligned_cols=107 Identities=24% Similarity=0.307 Sum_probs=65.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcc---------cCCC--ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPH--ITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~--~~~~~ 758 (818)
|+||++++++.++++|||+++.+...........|+.+|+||| ..+....+.|... ..+. ....+
T Consensus 126 p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~ 205 (274)
T cd06609 126 AANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMR 205 (274)
T ss_pred HHHEEECCCCCEEEcccccceeecccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHH
Confidence 7899999999999999999998765433344567899999999 2222222233211 1111 10001
Q ss_pred ee---cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 IL---DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~---d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.. ........ . .......+.+++..|++.+|++||+|+++++
T Consensus 206 ~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~ 250 (274)
T cd06609 206 VLFLIPKNNPPSL-E-GNKFSKPFKDFVSLCLNKDPKERPSAKELLK 250 (274)
T ss_pred HHHHhhhcCCCCC-c-ccccCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence 10 01111111 0 0002345667888999999999999999975
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-10 Score=125.02 Aligned_cols=110 Identities=18% Similarity=0.191 Sum_probs=66.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC---CCCcc-hHHHHhc----------ccCCCcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TSDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~~~~~~-- 755 (818)
|+|||++++..+||+|||+++........ .....++.+|+||| ..+.+ ..+.|+. ...+...
T Consensus 242 p~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~ 321 (375)
T cd05104 242 ARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMP 321 (375)
T ss_pred hhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 89999999999999999999876543221 22344667899999 11111 1112211 1111110
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
...++........ +......+.+++..|++.+|++||+|.||+++|++
T Consensus 322 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~ 373 (375)
T cd05104 322 VDSKFYKMIKEGYRMLS---PECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQ 373 (375)
T ss_pred chHHHHHHHHhCccCCC---CCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence 0111111111111 11123456788889999999999999999999985
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-10 Score=117.61 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=67.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCCC----CCcchHHHHhc----------ccCC--Cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~--~~ 754 (818)
|+||+++.++.+|++|||+++.+..... ......++.+|+|||. .++...+.|+. ...+ ..
T Consensus 125 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~ 204 (257)
T cd05040 125 ARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGL 204 (257)
T ss_pred cccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999999999999997754221 1234568899999992 22111122221 1111 11
Q ss_pred cccceecccC-CCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 755 TLTYILDQRI-SPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 755 ~~~~~~d~~l-~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
+..++..... .......+......+.+++..|++.+|++||++.+|++.|.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 205 SGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred CHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence 1111111000 00000112223456778888999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-10 Score=119.43 Aligned_cols=114 Identities=18% Similarity=0.287 Sum_probs=66.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---ccccc--cccceeCCCC----CCcchHHHHhc----------ccCCC-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---RTLIA--GTYRYIAPAK----HPQEILSLFSS----------TSDPH- 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---~~~~~--gt~gy~aPE~----~~~~~l~~~~~----------~~~~~- 753 (818)
|+||++|.++.+|++|||+++........ ..... ++..|+|||. ..+...+.|+. ...+.
T Consensus 134 p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~ 213 (269)
T cd05065 134 ARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW 213 (269)
T ss_pred hheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCC
Confidence 89999999999999999999876433211 11122 2468999991 11112222321 11111
Q ss_pred -ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 754 -ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 754 -~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....++.+........+.+.++...+.+++..|++.+|.+||+|.+|+..|+++
T Consensus 214 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 268 (269)
T cd05065 214 DMSNQDVINAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM 268 (269)
T ss_pred CCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 000111111000000011223445677888999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-10 Score=120.67 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=69.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhcc----------cCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSST----------SDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~~----------~~~--~~~ 755 (818)
|+||+++++..+||+|||+++....... ......++..|+||| ...+...+.|+.. ..+ ...
T Consensus 137 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~ 216 (303)
T cd05110 137 ARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP 216 (303)
T ss_pred cceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999997654322 123345678999999 2222122333311 111 100
Q ss_pred ---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 ---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+++...... +.+..+...+.+++..|+..+|++||+|.+|++.|+.+
T Consensus 217 ~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~ 268 (303)
T cd05110 217 TREIPDLLEKGERL---PQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRM 268 (303)
T ss_pred HHHHHHHHHCCCCC---CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111111111 11122345677889999999999999999999999987
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-10 Score=121.02 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=68.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~--~~~~~ 755 (818)
|+|||+++++.+||+|||+++....... ......++..|+|||. ......+.|+. .. +....
T Consensus 155 p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~ 234 (290)
T cd05045 155 ARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA 234 (290)
T ss_pred hheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 8999999999999999999986643221 1233456788999992 11111222321 11 11111
Q ss_pred ---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 ---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.+.++....... +......+.+++..|++.+|++||+|.++++.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~ 286 (290)
T cd05045 235 PERLFNLLKTGYRMER---PENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKM 286 (290)
T ss_pred HHHHHHHHhCCCCCCC---CCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHH
Confidence 1111222121111 222345677888999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-10 Score=122.77 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=68.6
Q ss_pred ccccccCCC-CcccccccccceeccCCCCCccccccccceeCCC---CCC-cc--hHHHHhcc---------cCCCc--c
Q 003465 694 FNNILLNSE-FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QE--ILSLFSST---------SDPHI--T 755 (818)
Q Consensus 694 ~~NILLd~~-~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~--~l~~~~~~---------~~~~~--~ 755 (818)
++|||||.+ ++.||+|||+++..........+.+||+.|+||| .++ ++ ..+.|+.. ..+.. .
T Consensus 148 ~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~ 227 (370)
T KOG0583|consen 148 PENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN 227 (370)
T ss_pred HHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc
Confidence 799999999 9999999999998742223345678999999999 333 44 55666532 22221 1
Q ss_pred ccceecccCCCcCccchHHH-HHHHHHHHHhccCCCCCCCCChHHHH
Q 003465 756 LTYILDQRISPPKKQKIVQD-IALASIVALACLQSKPKSVPTMQRVS 801 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~-~~~~~~la~~C~~~~p~~RP~m~~V~ 801 (818)
...+......+.. ..+... -..+..++.+|++.+|.+|+++.+|+
T Consensus 228 ~~~l~~ki~~~~~-~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~ 273 (370)
T KOG0583|consen 228 VPNLYRKIRKGEF-KIPSYLLSPEARSLIEKMLVPDPSTRITLLEIL 273 (370)
T ss_pred HHHHHHHHhcCCc-cCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 1111111111111 111111 34456677799999999999999998
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-11 Score=123.82 Aligned_cols=89 Identities=21% Similarity=0.289 Sum_probs=44.4
Q ss_pred cCCCCCCCEEEccCCcCCCC----CchhhcCCCCCCeeeccCCcCCCCcCccc-----cCCCCCCEEEcCCCccccc---
Q 003465 289 LGRLTSLSDLDLSHNSLFGP----IPPTLSHLTRLTTLKLFSNQINGSIPLGI-----GNLENLERVDMSSNKLEGP--- 356 (818)
Q Consensus 289 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~--- 356 (818)
+..+++|+.|||.+|-++.. +...++.+++|+.|++++|.+...-...+ ...++|+.|.+.+|.++..
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 34455555555555544322 22334445555555555555543222111 2345666666666665421
Q ss_pred -CCcCcCCCCCCCEEeccCCcC
Q 003465 357 -IPLTIGDLTNLIYLDLSLNQL 377 (818)
Q Consensus 357 -~~~~l~~l~~L~~L~Ls~n~l 377 (818)
+...+...+.|+.|+|++|.+
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcchhhHHhcCCcccc
Confidence 122334456677777777766
|
|
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-10 Score=125.03 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=67.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC---CCC-cchHHHHhc----------ccCCCcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~~~~-- 755 (818)
|+|||+|++.++||+|||+++.+...... .....++.+|+||| ..+ +...+.|+. ...+...
T Consensus 240 p~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~ 319 (374)
T cd05106 240 ARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGIL 319 (374)
T ss_pred hheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcccc
Confidence 89999999999999999999876443221 12334667899999 111 111222221 1111100
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++........ +......+.+++..|++.+|++||+|.+|+++|+++
T Consensus 320 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~ 372 (374)
T cd05106 320 VNSKFYKMVKRGYQMSR---PDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQ 372 (374)
T ss_pred ccHHHHHHHHcccCccC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 0111111111111 111234567788899999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-10 Score=117.31 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC------Ccc-hHHHHhcc---------cCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH------PQE-ILSLFSST---------SDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~------~~~-~l~~~~~~---------~~~~--~~ 755 (818)
|+||+++.++.+||+|||+++.............|+..|+|||.. +.+ ..+.|+.. ..+. ..
T Consensus 134 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~ 213 (267)
T cd06645 134 GANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLH 213 (267)
T ss_pred HHHEEECCCCCEEECcceeeeEccCcccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCccccc
Confidence 899999999999999999998764433333456799999999921 111 22333211 1110 00
Q ss_pred -cc---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 -LT---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 -~~---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.. .....................+.+++..|++.+|++||++.+|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~ 264 (267)
T cd06645 214 PMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ 264 (267)
T ss_pred chhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence 00 000011111100000111234567888999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-11 Score=138.01 Aligned_cols=132 Identities=26% Similarity=0.301 Sum_probs=93.0
Q ss_pred CCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcc--cccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCC
Q 003465 98 SCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNN--LTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175 (818)
Q Consensus 98 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 175 (818)
.+....+...+.+|.+.. ++... ..+.|++|-+..|. +....+..|..++.|++|||++|.--+.+|+.++.|-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 344566777777766652 22222 23468888887775 443344457778888888888777666788888888888
Q ss_pred CEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCc
Q 003465 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNK 232 (818)
Q Consensus 176 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 232 (818)
|+|+++++.+. .+|..+++|+.|.+|++..+.....+|.....+++|++|.+....
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 88888888877 678888888888888888776655556666668888888776543
|
|
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-10 Score=118.65 Aligned_cols=115 Identities=13% Similarity=0.190 Sum_probs=69.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHh----------cccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFS----------STSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~----------~~~~~--~~~~ 756 (818)
|+||+++.+..+|++|||+++....... ..+...++..|+||| +.++...+.|. ....+ ....
T Consensus 135 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~ 214 (270)
T cd05056 135 ARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKN 214 (270)
T ss_pred hheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCH
Confidence 8999999999999999999987754322 223344567899999 22221122221 11111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.+.......+.....+......+.+++.+|+..+|++||++.++++.|+++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~ 266 (270)
T cd05056 215 NDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDIL 266 (270)
T ss_pred HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 1111110011000112233456777888999999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-10 Score=116.27 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=64.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcc---------cCCCccc---c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPHITL---T 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~~~~---~ 757 (818)
++||++++++++|++|||++..............|+.+|+||| ...+...+.|..+ ..+.... .
T Consensus 127 ~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~ 206 (256)
T cd06612 127 AGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMR 206 (256)
T ss_pred cceEEECCCCcEEEcccccchhcccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhh
Confidence 8999999999999999999987754432334456899999999 2222222334211 1111000 0
Q ss_pred ce--ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YI--LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~--~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+ +........ ..+......+.+++..|++.+|++||+|.||++
T Consensus 207 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~ 252 (256)
T cd06612 207 AIFMIPNKPPPTL-SDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ 252 (256)
T ss_pred hhhhhccCCCCCC-CchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence 00 000000000 111122245677888999999999999999975
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-10 Score=118.75 Aligned_cols=43 Identities=30% Similarity=0.288 Sum_probs=35.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+|++|||+++.+.......+...|+.+|+|||
T Consensus 128 p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE 170 (286)
T cd07846 128 PENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPE 170 (286)
T ss_pred HHHEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcH
Confidence 8999999999999999999987755443344556899999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-10 Score=121.02 Aligned_cols=41 Identities=34% Similarity=0.441 Sum_probs=34.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++.+... ......||..|+|||
T Consensus 132 p~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~g~~~y~aPE 172 (331)
T cd06649 132 PSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPE 172 (331)
T ss_pred hhhEEEcCCCcEEEccCccccccccc--ccccCCCCcCcCCHh
Confidence 89999999999999999999866432 233457999999999
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-10 Score=122.99 Aligned_cols=114 Identities=17% Similarity=0.255 Sum_probs=69.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CC-CcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KH-PQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~-~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+|||+|+++.+||+|||+++.+..... ......|+..|+||| .. .+...+.|+. ...+. ..
T Consensus 201 p~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~ 280 (337)
T cd05054 201 ARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ 280 (337)
T ss_pred cceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCC
Confidence 8999999999999999999987643322 123455778899999 11 1111222321 11111 00
Q ss_pred ccceecccCCC-cCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISP-PKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~-~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+.+...+.. .....+......+.+++.+|++.+|++||++.||+++|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~ 333 (337)
T cd05054 281 IDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDL 333 (337)
T ss_pred ccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 01111011100 00001122345678899999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-10 Score=123.20 Aligned_cols=43 Identities=33% Similarity=0.363 Sum_probs=35.0
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++++||+|||+++...... ...+...||..|+|||
T Consensus 131 p~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE 174 (372)
T cd07853 131 PGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPE 174 (372)
T ss_pred hHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHH
Confidence 899999999999999999998764332 2234456899999999
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-10 Score=120.75 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=64.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCCC--ccc-c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDPH--ITL-T 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~~--~~~-~ 757 (818)
|+||+++.++.+||+|||+++.............|+..|+||| .......+.|.. ...+. ... .
T Consensus 144 p~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~ 223 (296)
T cd06654 144 SDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR 223 (296)
T ss_pred HHHEEEcCCCCEEECccccchhccccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999987644333334457899999999 212122222321 11111 000 0
Q ss_pred ceecccCCCc-CccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 758 YILDQRISPP-KKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 758 ~~~d~~l~~~-~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.......... ....+......+.+++.+|++.+|++||++.+|++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~ 270 (296)
T cd06654 224 ALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH 270 (296)
T ss_pred hHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence 0000000000 001122223456678889999999999999999863
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-11 Score=123.76 Aligned_cols=210 Identities=25% Similarity=0.219 Sum_probs=99.4
Q ss_pred cCCCcCceecccCcccccCCC--CCCCCCCCCcEEECcCCCCCCC--CccccCCCCCCCEEEccCCCCCCCCccC-CCCC
Q 003465 122 GALSKLQILDLSHNNLTGTIP--SKLGNLNNLVELYLSRSNLNGP--IPSTLGHLTRLSILDLSSNSLVGPIPFT-LGHL 196 (818)
Q Consensus 122 ~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l 196 (818)
.++++|+...|.++.+.. .+ .....|++++.|||+.|-+..- +-.....|++|+.|+|+.|.+....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 355666666666665542 22 2445566666666666655421 1122345666666666666554221111 1134
Q ss_pred CCCcEEEcccCcCCccC-CccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEE
Q 003465 197 TQLTTLKLFSNQINGCI-PLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLS 275 (818)
Q Consensus 197 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 275 (818)
++|+.|.|+.|.++... ...+..+++|+.|++.+|.....-......++.|+.|||++|++... +
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~------------- 262 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-D------------- 262 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-c-------------
Confidence 55555555555554211 11122345555555555532222222223344455555554444321 1
Q ss_pred ccccccCCcCCcccCCCCCCCEEEccCCcCCCC-Cchh-----hcCCCCCCeeeccCCcCCCC-cCccccCCCCCCEEEc
Q 003465 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGP-IPPT-----LSHLTRLTTLKLFSNQINGS-IPLGIGNLENLERVDM 348 (818)
Q Consensus 276 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L 348 (818)
.-...+.++.|..|+++.+.+... .|+. ...+++|++|++..|++... .-..+..+++|+.|.+
T Consensus 263 ---------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 263 ---------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ---------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 002234445555555555554432 1111 23456777777777766421 1122444566777777
Q ss_pred CCCcccc
Q 003465 349 SSNKLEG 355 (818)
Q Consensus 349 s~n~l~~ 355 (818)
..|.+..
T Consensus 334 ~~n~ln~ 340 (505)
T KOG3207|consen 334 TLNYLNK 340 (505)
T ss_pred ccccccc
Confidence 7777763
|
|
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-10 Score=117.97 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=35.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++++||+|||+++.............||..|+|||
T Consensus 131 p~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE 173 (288)
T cd07871 131 PQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPD 173 (288)
T ss_pred HHHEEECCCCCEEECcCcceeeccCCCccccCceecccccChH
Confidence 8999999999999999999987644333334567899999999
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-10 Score=116.22 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCCC----CCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+||+++++..+|++|||+++........ .....++..|+|||. .+....+.|.. ...+. ..
T Consensus 121 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~ 200 (251)
T cd05041 121 ARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS 200 (251)
T ss_pred cceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC
Confidence 89999999999999999999876432211 122334678999992 12112222321 11111 00
Q ss_pred ---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 756 ---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 756 ---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
..+.++...... .+......+.+++..|++.+|++||++.||++.|+.
T Consensus 201 ~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~~ 251 (251)
T cd05041 201 NQQTRERIESGYRMP---APQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQI 251 (251)
T ss_pred HHHHHHHHhcCCCCC---CCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhhC
Confidence 111111111111 122334567788899999999999999999998863
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-10 Score=124.11 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=62.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CCc-chHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HPQ-EILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~~-~~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+|||+|+++.+||+|||+++............+||++|+|||. ... ...+.|+. ...+ .....+
T Consensus 123 p~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~ 202 (328)
T cd05593 123 LENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK 202 (328)
T ss_pred HHHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHH
Confidence 89999999999999999999865333333445689999999991 111 11222321 1111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQE 803 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~~ 803 (818)
+......... ..+......+.++...|++.+|++|| ++.|+++.
T Consensus 203 ~~~~~~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h 251 (328)
T cd05593 203 LFELILMEDI-KFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH 251 (328)
T ss_pred HHHHhccCCc-cCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence 1111111110 00111123455677799999999997 78887743
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-10 Score=118.48 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=67.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhcc-----------cCCCc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSST-----------SDPHI-- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~~-----------~~~~~-- 754 (818)
|+||++++++.+|++|||+++.+..... ......++..|+||| ...+...+.|+.. ..+..
T Consensus 157 p~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~ 236 (295)
T cd05097 157 TRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLL 236 (295)
T ss_pred hhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCccc
Confidence 8999999999999999999987643321 123345678999999 2222222333211 11100
Q ss_pred cccceec-------ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 755 TLTYILD-------QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 755 ~~~~~~d-------~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
...+++. ..........+......+.+++.+|++.+|++||+|.+|++.|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~ 295 (295)
T cd05097 237 SDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE 295 (295)
T ss_pred ChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence 0011110 000000000111234568889999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-10 Score=116.43 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=65.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+||++++++.+|++|||+++.............|+..|+||| +......+.|... .+......+
T Consensus 130 p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~ 209 (257)
T cd08223 130 TQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNS 209 (257)
T ss_pred chhEEEecCCcEEEecccceEEecccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH
Confidence 8999999999999999999987754333344567899999999 1111122233211 111111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+......+.....+......+.+++..|++.+|++||+|.++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 253 (257)
T cd08223 210 LVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEKRPSVKSILR 253 (257)
T ss_pred HHHHHHhcCCCCCccccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 11111111110111223345677888999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.2e-10 Score=116.09 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=68.5
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCCC----CCcchHHHHh----------c--ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPAK----HPQEILSLFS----------S--TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE~----~~~~~l~~~~----------~--~~~~~~~ 755 (818)
|+||++++++.+|++|||.++...... .......++..|+|||. ......+.|+ . ..+....
T Consensus 133 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~ 212 (262)
T cd00192 133 ARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS 212 (262)
T ss_pred cceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCC
Confidence 899999999999999999999875432 22345668899999991 1111112221 1 1111111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
..++.+....+.....+......+.+++..|++.+|++||++.++++.|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~ 262 (262)
T cd00192 213 NEEVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE 262 (262)
T ss_pred HHHHHHHHHcCCCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence 11111111111111112233456778888999999999999999999874
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-10 Score=123.56 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=60.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+|||+|+++.+||+|||+++.............||++|+||| ....+ ..+.|+. ...+ .....+
T Consensus 124 p~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~ 203 (320)
T cd05590 124 LDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDD 203 (320)
T ss_pred HHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH
Confidence 8999999999999999999986543333445578999999999 11111 2223321 1111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
+......... ..+......+.++...|++.+|++||++
T Consensus 204 ~~~~i~~~~~-~~~~~~~~~~~~li~~~L~~dP~~R~~~ 241 (320)
T cd05590 204 LFEAILNDEV-VYPTWLSQDAVDILKAFMTKNPTMRLGS 241 (320)
T ss_pred HHHHHhcCCC-CCCCCCCHHHHHHHHHHcccCHHHCCCC
Confidence 1111111110 0011122345667779999999999998
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-10 Score=119.96 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=64.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcc---------cCCCcc---cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPHIT---LT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~~~---~~ 757 (818)
|+||++++++.+||+|||+++.............|+.+|+||| +.+....+.|... ..+... ..
T Consensus 143 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~ 222 (296)
T cd06655 143 SDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR 222 (296)
T ss_pred HHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999987654433334457899999999 2222223334311 111100 00
Q ss_pred ce--ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YI--LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~--~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
++ +........ ..+......+.+++..|++.+|++||++.+|++
T Consensus 223 ~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~ 268 (296)
T cd06655 223 ALYLIATNGTPEL-QNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ 268 (296)
T ss_pred HHHHHHhcCCccc-CCcccCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 00 000000000 011122334566788999999999999999884
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.3e-10 Score=117.57 Aligned_cols=113 Identities=13% Similarity=0.144 Sum_probs=67.4
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC----CCCcchHHHHhc-----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA----KHPQEILSLFSS-----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE----~~~~~~l~~~~~-----------~~~~~--~ 754 (818)
|+||++++++.+|++|||+++.+.... .......++.+|+||| .......+.|+. ...+. .
T Consensus 158 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~ 237 (296)
T cd05051 158 TRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHL 237 (296)
T ss_pred hhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCc
Confidence 899999999999999999998764332 1233456788999999 122221222221 11111 0
Q ss_pred cccceecccCC-------CcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 755 TLTYILDQRIS-------PPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 755 ~~~~~~d~~l~-------~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
...++++.... ....+.+......+.+++..|++.+|++||+|.||++.|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~~ 296 (296)
T cd05051 238 TDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQR 296 (296)
T ss_pred ChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhcC
Confidence 01111110000 00001112233568889999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-10 Score=121.49 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=69.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC------------------CCCcc------hHHHHh
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA------------------KHPQE------ILSLFS 747 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE------------------~~~~~------~l~~~~ 747 (818)
|.|.|+- .+..|+.|||+|+.+..+... .-.-+||+-||+|| .++.| .+...+
T Consensus 488 PANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMv 566 (677)
T KOG0596|consen 488 PANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMV 566 (677)
T ss_pred cccEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHH
Confidence 8898886 467999999999998777543 23467999999999 12222 233333
Q ss_pred cccCCCc-------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 748 STSDPHI-------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 748 ~~~~~~~-------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+.+ .+..+.||.-.-.+...+ .-..++++|..|++.||++||+..|+++
T Consensus 567 YgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~--~~~~li~~mK~CL~rdPkkR~si~eLLq 626 (677)
T KOG0596|consen 567 YGKTPFGQIINQIAKLHAITDPNHEIEFPDIP--ENDELIDVMKCCLARDPKKRWSIPELLQ 626 (677)
T ss_pred hcCCchHHHHHHHHHHHhhcCCCccccccCCC--CchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence 3333322 234556664322221111 1122778889999999999999999885
|
|
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.6e-10 Score=121.61 Aligned_cols=43 Identities=33% Similarity=0.373 Sum_probs=34.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+++....... ......||..|+|||
T Consensus 131 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE 176 (338)
T cd07859 131 PKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPE 176 (338)
T ss_pred HHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHH
Confidence 8999999999999999999986533221 224567999999999
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-10 Score=118.72 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=67.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------c--cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------T--SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~--~~~~~~~~~ 758 (818)
++||+++.+.++||+|||+++.............|+..|+||| +.++...+.|.. . .+......+
T Consensus 129 ~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~ 208 (256)
T cd08218 129 SQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKN 208 (256)
T ss_pred HHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHH
Confidence 8999999999999999999987644332233456899999999 222111122221 1 111122222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+++..+.+.....+......+.+++..|++.+|.+||+|.+|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~ 252 (256)
T cd08218 209 LVLKIIRGSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILE 252 (256)
T ss_pred HHHHHhcCCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence 23332322221122333456778888999999999999999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-10 Score=116.08 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=66.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcccC---------C--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSSTSD---------P--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~~~---------~--~~~~~~ 758 (818)
|+||++++++.++++|||+++.............|+..|+||| ...+...+.|..... + ......
T Consensus 128 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~ 207 (255)
T cd08219 128 SKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKN 207 (255)
T ss_pred cceEEECCCCcEEEcccCcceeecccccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHH
Confidence 8999999999999999999987754433344567999999999 222223344432211 1 000000
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.......+...+.+......+.+++.+|++.+|++||++.+|+.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~ 252 (255)
T cd08219 208 LILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILSR 252 (255)
T ss_pred HHHHHhcCCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence 100001111101111223346677889999999999999999865
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.8e-10 Score=116.98 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=34.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++|+++.+|++|||+++.............++.+|+|||
T Consensus 128 p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE 170 (284)
T cd07860 128 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPE 170 (284)
T ss_pred HHHEEECCCCCEEEeeccchhhcccCccccccccccccccCCe
Confidence 7899999999999999999987654333334456789999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-10 Score=119.06 Aligned_cols=109 Identities=22% Similarity=0.230 Sum_probs=64.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC---------CcchHHHHhcc---------cCC--C
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH---------PQEILSLFSST---------SDP--H 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~---------~~~~l~~~~~~---------~~~--~ 753 (818)
++||++++++.+|++|||+++.+...........|+.+|+|||.- .....+.|+.. ..+ .
T Consensus 152 p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~ 231 (286)
T cd06638 152 GNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLAD 231 (286)
T ss_pred HHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCC
Confidence 899999999999999999998765433333445799999999921 01122233211 111 1
Q ss_pred cc-ccceec--ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 754 IT-LTYILD--QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 754 ~~-~~~~~d--~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.. ...+.. ....... ..+......+..++..|++.+|++||++.||++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~ 283 (286)
T cd06638 232 LHPMRALFKIPRNPPPTL-HQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQH 283 (286)
T ss_pred CchhHHHhhccccCCCcc-cCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence 00 011000 0000000 0011112346678889999999999999999875
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.9e-10 Score=115.81 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=66.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCCC----CCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||+++.++.+|++|||+++....... ......++..|+|||. ..+...+.|.. ...+. ...
T Consensus 130 p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~ 209 (260)
T cd05073 130 AANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN 209 (260)
T ss_pred cceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH
Confidence 8999999999999999999987643322 2233456788999992 11111122221 11111 100
Q ss_pred ccee---cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 757 TYIL---DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 757 ~~~~---d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.++. ....... ........+.+++.+|++.+|++||++.++.+.|+.
T Consensus 210 ~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~ 259 (260)
T cd05073 210 PEVIRALERGYRMP---RPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 259 (260)
T ss_pred HHHHHHHhCCCCCC---CcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 0111 1111111 112233457778889999999999999999999975
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-10 Score=117.62 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=65.1
Q ss_pred ccccccCCCC---cccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--
Q 003465 694 FNNILLNSEF---EAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~~~---~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~-- 752 (818)
|+||+++.++ .+|++|||+++.+..... ......++..|+||| ...+...+.|.. ...+
T Consensus 144 p~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~ 223 (277)
T cd05036 144 ARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYP 223 (277)
T ss_pred hheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCC
Confidence 8999998754 699999999987633211 112233457899999 222222233321 1111
Q ss_pred CccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 753 HITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 753 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.....++.+..........+......+.+++..|++.+|++||++.+|++.|.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~~ 277 (277)
T cd05036 224 GRTNQEVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQY 277 (277)
T ss_pred CCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhhC
Confidence 111111111111110001122334567788899999999999999999998863
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.8e-10 Score=117.57 Aligned_cols=114 Identities=14% Similarity=0.199 Sum_probs=68.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhcccC---------CCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSSTSD---------PHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~~~~---------~~~--- 754 (818)
|+||++++++.+|++|||+++.+..... ......|+..|+||| ..++...+.|+.... +..
T Consensus 137 p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~ 216 (284)
T cd05079 137 ARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPM 216 (284)
T ss_pred hheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCcccc
Confidence 8999999999999999999987654322 123456777899999 222221222322111 000
Q ss_pred -cccceecccC-------------CCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 -TLTYILDQRI-------------SPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 -~~~~~~d~~l-------------~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+.+.+.- .+...+.+......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~ 283 (284)
T cd05079 217 TLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI 283 (284)
T ss_pred chhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence 0000000000 0000011122345678899999999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.6e-10 Score=121.20 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=34.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++..... .......||..|+|||
T Consensus 147 p~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE 188 (355)
T cd07874 147 PSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPE 188 (355)
T ss_pred hHHEEECCCCCEEEeeCcccccCCCc-cccCCccccCCccCHH
Confidence 89999999999999999999865332 2233457999999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-10 Score=122.99 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=35.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++.............||.+|+|||
T Consensus 129 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE 171 (324)
T cd05587 129 LDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPE 171 (324)
T ss_pred HHHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChh
Confidence 8999999999999999999986433333344567999999999
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-10 Score=124.13 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=61.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhccc---------CC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSSTS---------DP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~~---------~~--~~~~~~ 758 (818)
|+|||+|+++.+||+|||+++.............||+.|+||| ..+.+ ..+.|+... .+ .....+
T Consensus 124 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~ 203 (323)
T cd05575 124 PENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAE 203 (323)
T ss_pred HHHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHH
Confidence 8999999999999999999986533333445678999999999 11211 223333211 11 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQ 798 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~ 798 (818)
+.+..+.... .........+.++...|++.+|++||++.
T Consensus 204 ~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~ 242 (323)
T cd05575 204 MYDNILNKPL-RLKPNISVSARHLLEGLLQKDRTKRLGAK 242 (323)
T ss_pred HHHHHHcCCC-CCCCCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence 1111111110 00111233456677799999999999985
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-11 Score=121.02 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=42.7
Q ss_pred cCCCCCCCEEeccCCcCCCC----CCcccCCCCCCCEEEccCCcCcccCCccc-----cCCCCCCEEecccCcCccc---
Q 003465 361 IGDLTNLIYLDLSLNQLSGP----IPSTFGHLTLLKFLNLNSNKLNGSIPSEL-----MNCFSLQSLILSNNSLTGR--- 428 (818)
Q Consensus 361 l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~--- 428 (818)
+..+++|+.|||.+|-++.. +...+..+++|+.|++++|.+...-...+ ...++|+.|.+.+|.|+..
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 33444455555544444321 22234444555555555555543221111 1245666666666666431
Q ss_pred -CCccccCCCCCCEEECcCCcC
Q 003465 429 -IPSEIRNLSYLHELDLSLNFI 449 (818)
Q Consensus 429 -~p~~l~~l~~L~~L~Ls~N~l 449 (818)
+...+...+.|..|+|++|.+
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcchhhHHhcCCcccc
Confidence 112233456666777777766
|
|
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-10 Score=121.53 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=36.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++............+||.+|+|||
T Consensus 124 p~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE 166 (316)
T cd05592 124 LDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPE 166 (316)
T ss_pred HHHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccCHH
Confidence 8999999999999999999987544333445678999999999
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=118.87 Aligned_cols=40 Identities=30% Similarity=0.371 Sum_probs=34.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++..... .+...||..|+|||
T Consensus 146 p~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~t~~y~aPE 185 (343)
T cd07878 146 PSNVAVNEDCELRILDFGLARQADDE---MTGYVATRWYRAPE 185 (343)
T ss_pred hhhEEECCCCCEEEcCCccceecCCC---cCCccccccccCch
Confidence 89999999999999999999876432 23457899999999
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.1e-10 Score=118.81 Aligned_cols=113 Identities=14% Similarity=0.193 Sum_probs=66.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CC-cchHHHHhc----------ccCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HP-QEILSLFSS----------TSDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~-~~~l~~~~~----------~~~~--~~~~~ 757 (818)
|+|||+++++.+||+|||+++...... .......+.+|+|||. .+ +...+.|+. ...+ .....
T Consensus 147 p~Nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~ 225 (297)
T cd05089 147 ARNVLVGENLASKIADFGLSRGEEVYV-KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCA 225 (297)
T ss_pred cceEEECCCCeEEECCcCCCcccccee-ccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence 899999999999999999987532211 1122234568999992 12 112233321 1111 11111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
++.+....+...+.+......+.+++.+|++.+|.+||+|.+|+++|+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 275 (297)
T cd05089 226 ELYEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRM 275 (297)
T ss_pred HHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111111100011222334567888899999999999999999999887
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-10 Score=121.88 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=61.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CCc-chHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HPQ-EILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~~-~~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++.............||++|+|||. ... ...+.|+. ...+ .....+
T Consensus 123 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~ 202 (323)
T cd05595 123 LENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER 202 (323)
T ss_pred HHHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHH
Confidence 89999999999999999999864333333345679999999992 111 12223321 1111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
.......... ..+......+.++...|++.+|++|| ++.++++
T Consensus 203 ~~~~~~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~ 250 (323)
T cd05595 203 LFELILMEEI-RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 250 (323)
T ss_pred HHHHHhcCCC-CCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence 1111111100 00111223445677799999999998 7777764
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.5e-10 Score=119.06 Aligned_cols=41 Identities=34% Similarity=0.441 Sum_probs=33.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+++..... ......||..|+|||
T Consensus 132 p~Nili~~~~~~kL~Dfg~~~~~~~~--~~~~~~~~~~y~aPE 172 (333)
T cd06650 132 PSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPE 172 (333)
T ss_pred hhhEEEcCCCCEEEeeCCcchhhhhh--ccccCCCCccccCHH
Confidence 89999999999999999999865332 223457999999999
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.7e-10 Score=114.96 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=64.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhc----------cc--CCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSS----------TS--DPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~--~~~~~~~ 757 (818)
|+||+++.++.+|++|||+++..... ......+..|+|||. ..+...+.|+. .. +......
T Consensus 128 p~nili~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~ 204 (254)
T cd05083 128 ARNILVSEDGVAKVSDFGLARVGSMG---VDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLK 204 (254)
T ss_pred cceEEEcCCCcEEECCCccceecccc---CCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHH
Confidence 89999999999999999999865332 122334578999992 11111122221 11 1111111
Q ss_pred ce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 758 YI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 758 ~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
+. +........ +......+.+++.+|++.+|++||+|.+|++.|++
T Consensus 205 ~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 253 (254)
T cd05083 205 EVKECVEKGYRMEP---PEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK 253 (254)
T ss_pred HHHHHHhCCCCCCC---CCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence 11 111111111 12234556788889999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-10 Score=121.26 Aligned_cols=107 Identities=12% Similarity=0.161 Sum_probs=62.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc-chHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-EILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+|+++.+||+|||+++.... ......||++|+||| .... ...+.|+.. ..+ .....+
T Consensus 129 p~Nil~~~~~~~kL~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~ 205 (333)
T cd05600 129 PENFLIDASGHIKLTDFGLSKGIVT---YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNE 205 (333)
T ss_pred HHHEEECCCCCEEEEeCcCCccccc---ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHH
Confidence 8999999999999999999986543 234567999999999 1111 122233211 111 111111
Q ss_pred eec------ccCCCcCccc-hHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ILD------QRISPPKKQK-IVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~~d------~~l~~~~~~~-~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
... ..+....... .......+.++...|++.+|++||++.++++.
T Consensus 206 ~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h 257 (333)
T cd05600 206 TWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH 257 (333)
T ss_pred HHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence 100 0010000000 00112345567779999999999999999854
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-10 Score=122.65 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=60.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+|+++.+||+|||+++............+||+.|+||| ..+.+ ..+.|+.. ..+ .....+
T Consensus 129 p~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~ 208 (323)
T cd05616 129 LDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE 208 (323)
T ss_pred HHHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999986543333445678999999999 22211 22333311 111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
+......... ..+......+.+++..|++.+|.+|++.
T Consensus 209 ~~~~i~~~~~-~~p~~~s~~~~~li~~~l~~~p~~R~~~ 246 (323)
T cd05616 209 LFQSIMEHNV-AYPKSMSKEAVAICKGLMTKHPGKRLGC 246 (323)
T ss_pred HHHHHHhCCC-CCCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence 1111111100 0011223445678889999999999984
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-10 Score=121.34 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=62.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CCcc-hHHHHh---------cccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HPQE-ILSLFS---------STSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~~~-~l~~~~---------~~~~~--~~~~~~ 758 (818)
|+|||+|+++.+||+|||+++.............||++|+|||. .+.+ ..+.|+ ....+ .....+
T Consensus 128 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~ 207 (323)
T cd05584 128 PENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKK 207 (323)
T ss_pred HHHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHH
Confidence 89999999999999999999865443333455689999999991 1111 122222 11111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
.++....+.. ..+......+.+++..|++.+|++|| ++.++.+
T Consensus 208 ~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~ 255 (323)
T cd05584 208 TIDKILKGKL-NLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS 255 (323)
T ss_pred HHHHHHcCCC-CCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence 1111111111 11111223456777899999999999 6676654
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.2e-10 Score=116.04 Aligned_cols=114 Identities=13% Similarity=0.203 Sum_probs=68.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC---CCc-chHHHHhcc----------cCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK---HPQ-EILSLFSST----------SDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~---~~~-~~l~~~~~~----------~~~~--~~ 755 (818)
|+||++++++.+|++|||+++....+.. ......++..|++||. ... ...+.|+.. ..+. ..
T Consensus 141 p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~ 220 (273)
T cd05074 141 ARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVE 220 (273)
T ss_pred hhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCC
Confidence 8999999999999999999987643321 1223456678999991 111 122233211 1110 00
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+.............+......+.+++.+|++.+|++||++.+|.+.|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~ 272 (273)
T cd05074 221 NSEIYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI 272 (273)
T ss_pred HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 0011110001100011122345788899999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.4e-10 Score=117.08 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=63.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCCCc--cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDPHI--TLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~~~--~~~~ 758 (818)
++||++|+++.+||+|||+++.............|+.+|+||| ..+....+.|+. ...+.. ...+
T Consensus 145 p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~ 224 (297)
T cd06659 145 SDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQ 224 (297)
T ss_pred HHHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 7899999999999999999986654433334567999999999 112112223321 111110 0000
Q ss_pred ---eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ---ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ---~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.+........ .........+.+++..|++.+|++||++.+|++.
T Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~ 271 (297)
T cd06659 225 AMKRLRDSPPPKL-KNAHKISPVLRDFLERMLTREPQERATAQELLDH 271 (297)
T ss_pred HHHHHhccCCCCc-cccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence 0000000000 0011112345667779999999999999999973
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-10 Score=122.05 Aligned_cols=43 Identities=33% Similarity=0.485 Sum_probs=35.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+++.............||++|+|||
T Consensus 124 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE 166 (321)
T cd05591 124 LDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPE 166 (321)
T ss_pred HHHeEECCCCCEEEeecccceecccCCccccccccCccccCHH
Confidence 8999999999999999999986543333345567999999999
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.5e-10 Score=117.36 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=67.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHhc----------ccCCCcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~~~-- 755 (818)
|+|||++.+..+|++|||+++....... ......++..|+|||. .++...+.|+. ...+...
T Consensus 169 p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~ 248 (302)
T cd05055 169 ARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMP 248 (302)
T ss_pred cceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCC
Confidence 8999999999999999999987643322 1123346788999992 11122223321 1111100
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+.++....... +......+.+++..|++.+|++||++.||++.|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~ 301 (302)
T cd05055 249 VDSKFYKLIKEGYRMAQ---PEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ 301 (302)
T ss_pred chHHHHHHHHcCCcCCC---CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence 0111111111111 111234577788899999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.8e-10 Score=115.85 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=34.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++.............|+..|+|||
T Consensus 129 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE 171 (285)
T cd07861 129 PQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPE 171 (285)
T ss_pred HHHEEEcCCCcEEECcccceeecCCCcccccCCcccccccChH
Confidence 8999999999999999999987643333333446789999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-10 Score=121.64 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=59.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+||++|+++.+||+|||+++............+||++|+||| ... ....+.|+. ...+ .....+
T Consensus 129 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~ 208 (324)
T cd05589 129 LDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEE 208 (324)
T ss_pred HHHeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999986433333345578999999999 111 112223321 1111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
+.+....... ..+......+.+++..|++.+|.+||++
T Consensus 209 ~~~~i~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~ 246 (324)
T cd05589 209 VFDSIVNDEV-RYPRFLSREAISIMRRLLRRNPERRLGS 246 (324)
T ss_pred HHHHHHhCCC-CCCCCCCHHHHHHHHHHhhcCHhHcCCC
Confidence 1111111110 0011123345677889999999999954
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-10 Score=123.12 Aligned_cols=110 Identities=20% Similarity=0.218 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcccC---------C--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSSTSD---------P--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~~~---------~--~~~~~~ 758 (818)
|+|||+|+++.+||+|||+++............+||.+|+||| ..+.+ ..+.|+.... + .....+
T Consensus 124 p~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~ 203 (325)
T cd05604 124 PENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAE 203 (325)
T ss_pred HHHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHH
Confidence 8999999999999999999986433333345678999999999 22221 2233432211 1 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
+.+..+.... .........+.++...|++.+|.+||++++.++++
T Consensus 204 ~~~~~~~~~~-~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i 248 (325)
T cd05604 204 MYDNILHKPL-VLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEI 248 (325)
T ss_pred HHHHHHcCCc-cCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHHHH
Confidence 1111111110 00011123345677799999999999987544443
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-10 Score=121.87 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=70.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc--hHHHHhcc-----------cCCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE--ILSLFSST-----------SDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~--~l~~~~~~-----------~~~~~~~~ 757 (818)
|.|+|||++...||||||+|-+-..+ ..-.+-||++.|.||| .+|++ ..+.|..+ .+.++++.
T Consensus 140 pENlLLd~~~nIKIADFGMAsLe~~g-klLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir 218 (786)
T KOG0588|consen 140 PENLLLDVKNNIKIADFGMASLEVPG-KLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIR 218 (786)
T ss_pred chhhhhhcccCEeeeccceeecccCC-ccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHH
Confidence 89999999999999999999764333 3344568999999999 55555 33445422 22233344
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
.++.+.-.+.+ +-+..-..++-.+....+..||+.|-||.||.+.-
T Consensus 219 ~LLlKV~~G~f-~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP 264 (786)
T KOG0588|consen 219 VLLLKVQRGVF-EMPSNISSEAQDLLRRMLDVDPSTRITTEEILKHP 264 (786)
T ss_pred HHHHHHHcCcc-cCCCcCCHHHHHHHHHHhccCccccccHHHHhhCc
Confidence 44333333332 11111122333455588899999999999998753
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-10 Score=120.51 Aligned_cols=112 Identities=28% Similarity=0.237 Sum_probs=50.7
Q ss_pred CCCCCcEEEccccccCCcCCcc-cCCCCCCCEEEccCCcCCCC-CchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCC
Q 003465 267 YLENLVYLSLNVNNLTGPIPST-LGRLTSLSDLDLSHNSLFGP-IPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLE 344 (818)
Q Consensus 267 ~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 344 (818)
.+++|+.|+|+.|.+....... -..+++|+.|.|+.|.++-. +...+..+|+|+.|+|..|............+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 3444455555544443211111 01345555666666555421 112233456666666666542212222223345566
Q ss_pred EEEcCCCcccccC-CcCcCCCCCCCEEeccCCcCC
Q 003465 345 RVDMSSNKLEGPI-PLTIGDLTNLIYLDLSLNQLS 378 (818)
Q Consensus 345 ~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~ 378 (818)
.|+|++|++.... ....+.++.|+.|+++.|.+.
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcc
Confidence 6666666554211 123445556666666655554
|
|
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-10 Score=111.13 Aligned_cols=55 Identities=27% Similarity=0.295 Sum_probs=45.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC-----CCCcchHHHHhc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA-----KHPQEILSLFSS 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE-----~~~~~~l~~~~~ 748 (818)
+||+|+...+..|||||||||.+...-...|..+-|..|-||| +.....++.|+.
T Consensus 205 ~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSv 264 (419)
T KOG0663|consen 205 TSNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSV 264 (419)
T ss_pred hhheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhH
Confidence 8999999999999999999999876655677788999999999 222235677764
|
|
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.2e-10 Score=114.79 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=34.1
Q ss_pred ccccccCCCCcccccccccceeccCCC---CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS---SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~---~~~~~~~gt~gy~aPE 736 (818)
++||++|+++.+||+|||+++.+.... .......|+.+|+|||
T Consensus 134 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE 179 (266)
T cd06651 134 GANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPE 179 (266)
T ss_pred HHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHH
Confidence 899999999999999999998764321 1223456899999999
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-09 Score=119.66 Aligned_cols=42 Identities=29% Similarity=0.267 Sum_probs=34.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++..... ...+...||.+|+|||
T Consensus 151 p~NIl~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~t~~y~aPE 192 (359)
T cd07876 151 PSNIVVKSDCTLKILDFGLARTACTN-FMMTPYVVTRYYRAPE 192 (359)
T ss_pred HHHEEECCCCCEEEecCCCccccccC-ccCCCCcccCCCCCch
Confidence 89999999999999999999865332 2234467899999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-09 Score=113.41 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=65.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCcc-ccccccceeCCCC----CCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRT-LIAGTYRYIAPAK----HPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~-~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
++||++|+++.+|++|||+++.......... ...+++.|+|||. .+....+.|.. ...+. ...
T Consensus 131 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~ 210 (258)
T smart00219 131 ARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSN 210 (258)
T ss_pred cceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 8999999999999999999987754422211 2347889999992 12111222221 11111 111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
.++...................+.+++.+|+..+|++||++.|+++.|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l 258 (258)
T smart00219 211 EEVLEYLKKGYRLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL 258 (258)
T ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence 111110000000011122345677788899999999999999998764
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.5e-10 Score=114.40 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=66.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhc---------cc--CCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSS---------TS--DPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~--~~~~~~~~ 758 (818)
|+||++++++++|++|||+++.............|+..|+|||. ..+...+.|.. .. +......+
T Consensus 138 p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 217 (265)
T cd08217 138 PANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQ 217 (265)
T ss_pred HHHEEEecCCCEEEecccccccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHH
Confidence 88999999999999999999987554433345578999999992 11111222321 11 11110111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
+.+....+.....+......+.+++..|++.+|++||+|.+|++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~ 262 (265)
T cd08217 218 LASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQL 262 (265)
T ss_pred HHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence 111111111101122334567788889999999999999999864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-10 Score=120.63 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=63.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC-----------Cc--cccccccceeCCC---CCCcc-hHHHHh---------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-----------NR--TLIAGTYRYIAPA---KHPQE-ILSLFS--------- 747 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-----------~~--~~~~gt~gy~aPE---~~~~~-~l~~~~--------- 747 (818)
|.|||||+||+.||+|||-||.+..... .. ...+||..|++|| ..+.+ .-+-|+
T Consensus 202 PENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQml 281 (604)
T KOG0592|consen 202 PENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQML 281 (604)
T ss_pred hhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHh
Confidence 9999999999999999999999853211 11 4589999999999 33332 222343
Q ss_pred cccCCC--cc----ccceec--ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 748 STSDPH--IT----LTYILD--QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 748 ~~~~~~--~~----~~~~~d--~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+..+. .+ ...|++ -.+.... ...+.++...-+..||.+|++..|+.+
T Consensus 282 aG~PPFra~NeyliFqkI~~l~y~fp~~f-------p~~a~dLv~KLLv~dp~~Rlt~~qIk~ 337 (604)
T KOG0592|consen 282 AGQPPFRAANEYLIFQKIQALDYEFPEGF-------PEDARDLIKKLLVRDPSDRLTSQQIKA 337 (604)
T ss_pred cCCCCCccccHHHHHHHHHHhcccCCCCC-------CHHHHHHHHHHHccCccccccHHHHhh
Confidence 222221 11 112222 1222222 233344555677899999999988764
|
|
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.6e-10 Score=116.21 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=71.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC-----CccccccccceeCCCC------CCcc--hHHHHhccc---------C
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-----NRTLIAGTYRYIAPAK------HPQE--ILSLFSSTS---------D 751 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-----~~~~~~gt~gy~aPE~------~~~~--~l~~~~~~~---------~ 751 (818)
|+|+||++++++||+|||.+-....+.. .-...+||+.+||||- ..+. .++.|+... .
T Consensus 238 PsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~ 317 (576)
T KOG0585|consen 238 PSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQL 317 (576)
T ss_pred hhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccC
Confidence 9999999999999999999987743311 1245789999999991 1111 566675321 1
Q ss_pred C--Cccccceecc----cCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 752 P--HITLTYILDQ----RISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 752 ~--~~~~~~~~d~----~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+ .....+..|+ .+..+. ..+.-...-.+....++.||+.|-+..+|....--.
T Consensus 318 PF~~~~~~~l~~KIvn~pL~fP~---~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt 376 (576)
T KOG0585|consen 318 PFFDDFELELFDKIVNDPLEFPE---NPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVT 376 (576)
T ss_pred CcccchHHHHHHHHhcCcccCCC---cccccHHHHHHHHHHhhcChhheeehhhheecceec
Confidence 1 2222333333 333222 222334445566788999999999999987665433
|
|
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=7e-10 Score=118.35 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=68.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+||++++++++|++|||+++....... ..+...++..|+||| ..++...+.|+. ...+ ...
T Consensus 168 p~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~ 247 (307)
T cd05098 168 ARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 247 (307)
T ss_pred HHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC
Confidence 8999999999999999999986643211 122333557899999 212222222321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..++.+........+.+......+.+++..|++.+|++||+|.+|++.|+++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~ 300 (307)
T cd05098 248 VEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 300 (307)
T ss_pred HHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence 11111110001000112233456677888999999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=114.17 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=65.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhc---------ccCCCccc--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSS---------TSDPHITL--TY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~~~~~~~--~~ 758 (818)
++||+++.++.+|++|||+++.+...........|+.+|+|||. .+....+.|+. ...+.... ..
T Consensus 129 p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~ 208 (277)
T cd06641 129 AANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMK 208 (277)
T ss_pred HHhEEECCCCCEEEeecccceecccchhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHH
Confidence 89999999999999999999876543323334568999999992 11112222321 11111100 00
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
....................+.+++.+|++.+|.+||+|.++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~ 253 (277)
T cd06641 209 VLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 253 (277)
T ss_pred HHHHHhcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 000000000000112234456778889999999999999999974
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.3e-10 Score=116.80 Aligned_cols=109 Identities=21% Similarity=0.193 Sum_probs=64.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----C-----CcchHHHHhc---------ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----H-----PQEILSLFSS---------TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~-----~~~~l~~~~~---------~~~~~~~ 755 (818)
|+||++++++.+||+|||+++............+|+..|+|||. . .+...+.|+. ...+...
T Consensus 156 p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~ 235 (291)
T cd06639 156 GNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFD 235 (291)
T ss_pred HHHEEEcCCCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCC
Confidence 89999999999999999999876543322334578999999992 1 1112223321 1111110
Q ss_pred c--cceecccCCCcC--ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 L--TYILDQRISPPK--KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~--~~~~d~~l~~~~--~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. .+.+........ ...+.+....+.+++..|++.+|++||+|.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~ 286 (291)
T cd06639 236 MHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLE 286 (291)
T ss_pred CcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 0 000110000000 0011122345677889999999999999999875
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.8e-11 Score=121.21 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=36.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|.|||||+.++++|||.|||-.+........+ +||.||||||
T Consensus 315 PeNILLDd~GhvRISDLGLAvei~~g~~~~~r-vGT~GYMAPE 356 (591)
T KOG0986|consen 315 PENILLDDHGHVRISDLGLAVEIPEGKPIRGR-VGTVGYMAPE 356 (591)
T ss_pred hhheeeccCCCeEeeccceEEecCCCCccccc-cCcccccCHH
Confidence 89999999999999999999988666544443 8999999999
|
|
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-10 Score=106.27 Aligned_cols=103 Identities=19% Similarity=0.179 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhccc-----------CCCcc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSSTS-----------DPHIT--- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~~-----------~~~~~--- 755 (818)
|.|+|++.+++.||||||.+-.-. .....+.+||+-|.||| .++.| .++.|.-+. ++...
T Consensus 152 penlLlg~~~~lkiAdfGwsV~~p--~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~e 229 (281)
T KOG0580|consen 152 PENLLLGSAGELKIADFGWSVHAP--SNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSE 229 (281)
T ss_pred HHHhccCCCCCeeccCCCceeecC--CCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHH
Confidence 899999999999999999986543 33345689999999999 22233 566664221 11111
Q ss_pred -ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 -LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 -~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
..++..-++. . +..-...+.+++..|+..+|.+|.+..||++.
T Consensus 230 tYkrI~k~~~~--~---p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~h 273 (281)
T KOG0580|consen 230 TYKRIRKVDLK--F---PSTISGGAADLISRLLVKNPIERLALTEVMDH 273 (281)
T ss_pred HHHHHHHcccc--C---CcccChhHHHHHHHHhccCccccccHHHHhhh
Confidence 1111111111 1 11122345567789999999999999999863
|
|
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-09 Score=114.15 Aligned_cols=43 Identities=28% Similarity=0.322 Sum_probs=34.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+|++|||+++.........+...++..|+|||
T Consensus 127 p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE 169 (283)
T cd07835 127 PQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPE 169 (283)
T ss_pred HHHEEEcCCCcEEEeecccccccCCCccccCccccccCCCCCc
Confidence 8999999999999999999986643332233446789999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.1e-10 Score=116.89 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=62.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHh---------cccCCC--ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFS---------STSDPH--ITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~---------~~~~~~--~~~~~ 758 (818)
|+||++|+++++|++|||+++.............|+..|+|||. ..+..-+.|+ ....+. ....+
T Consensus 146 p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~ 225 (292)
T cd06658 146 SDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQ 225 (292)
T ss_pred HHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 89999999999999999999866443333344578999999991 1111122232 111111 00000
Q ss_pred e---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 I---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
. +...+.... .........+..+...|++.+|++||++.++++.
T Consensus 226 ~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~ 272 (292)
T cd06658 226 AMRRIRDNLPPRV-KDSHKVSSVLRGFLDLMLVREPSQRATAQELLQH 272 (292)
T ss_pred HHHHHHhcCCCcc-ccccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 0 000111110 0001112234556678999999999999999864
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.9e-10 Score=115.46 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=68.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCCC----CCcchHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPAK----HPQEILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~--~~~~~ 755 (818)
|+||++++++.+|++|||+++.+...... .....++..|+|||. .+....+.|.. .. +....
T Consensus 137 p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~ 216 (279)
T cd05057 137 ARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP 216 (279)
T ss_pred cceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCC
Confidence 89999999999999999999977543221 122334678999992 11111222221 11 11111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+........+.+..+...+.+++..|+..+|.+||++.++++.|+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~ 268 (279)
T cd05057 217 AVEIPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKM 268 (279)
T ss_pred HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 1111111111111011222334567788899999999999999999999987
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-09 Score=115.91 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=35.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++++||+|||+++.............||..|+|||
T Consensus 132 p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE 174 (309)
T cd07872 132 PQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPD 174 (309)
T ss_pred HHHEEECCCCCEEECccccceecCCCccccccccccccccCCH
Confidence 8999999999999999999987644333334456899999999
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-10 Score=121.05 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=59.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+|||+|+++.+||+|||+++.............||.+|+||| ..+.+ ..+.|+. ...+ .....+
T Consensus 129 p~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~ 208 (323)
T cd05615 129 LDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDE 208 (323)
T ss_pred HHHeEECCCCCEEEeccccccccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999986543333344567999999999 22221 2223321 1111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
++...+.... ..+......+.++...|++.+|.+|++.
T Consensus 209 ~~~~i~~~~~-~~p~~~~~~~~~li~~~l~~~p~~R~~~ 246 (323)
T cd05615 209 LFQSIMEHNV-SYPKSLSKEAVSICKGLMTKHPSKRLGC 246 (323)
T ss_pred HHHHHHhCCC-CCCccCCHHHHHHHHHHcccCHhhCCCC
Confidence 1111111110 0111123345677889999999999985
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-10 Score=114.99 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=68.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc--hHHHHhc---------ccCCC-c-ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE--ILSLFSS---------TSDPH-I-TLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~--~l~~~~~---------~~~~~-~-~~~ 757 (818)
-.|||||.+.++|||||||+-++..+. .-++.+|++-|..|| ..|+. .++.|+- ..++. + .-.
T Consensus 181 LENILLD~N~NiKIADFGLSNly~~~k-fLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk 259 (668)
T KOG0611|consen 181 LENILLDQNNNIKIADFGLSNLYADKK-FLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHK 259 (668)
T ss_pred hhheeecCCCCeeeeccchhhhhcccc-HHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHH
Confidence 579999999999999999998875443 345689999999999 33433 3445542 22221 1 111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.++.+.-.+.+. ..+.+.....++.+.+..+|++|-|+.+|...
T Consensus 260 ~lvrQIs~GaYr--EP~~PSdA~gLIRwmLmVNP~RRATieDiAsH 303 (668)
T KOG0611|consen 260 RLVRQISRGAYR--EPETPSDASGLIRWMLMVNPERRATIEDIASH 303 (668)
T ss_pred HHHHHhhccccc--CCCCCchHHHHHHHHHhcCcccchhHHHHhhh
Confidence 112221122211 11223344556778899999999999998754
|
|
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.4e-10 Score=119.78 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=35.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++|.++++||+|||+++.............||.+|+|||
T Consensus 124 p~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE 166 (329)
T cd05618 124 LDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPE 166 (329)
T ss_pred HHHEEECCCCCEEEeeCCccccccCCCCccccccCCccccCHH
Confidence 8999999999999999999986433333344578999999999
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-09 Score=128.00 Aligned_cols=114 Identities=23% Similarity=0.230 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCC------------------CCccccccccceeCCC---CCC-cchHHHHhcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS------------------SNRTLIAGTYRYIAPA---KHP-QEILSLFSST-- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~------------------~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~-- 749 (818)
|+|||+|.++.+||+|||+++...... ......+||++|+||| ..+ +...+.|+.+
T Consensus 141 PeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVI 220 (932)
T PRK13184 141 PDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVI 220 (932)
T ss_pred hheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHH
Confidence 899999999999999999998762110 0012357999999999 122 2223334311
Q ss_pred -------cCC--Cccccceecc-cCCCcCc-cchHHHHHHHHHHHHhccCCCCCCCC-ChHHHHHHHccC
Q 003465 750 -------SDP--HITLTYILDQ-RISPPKK-QKIVQDIALASIVALACLQSKPKSVP-TMQRVSQEFLKF 807 (818)
Q Consensus 750 -------~~~--~~~~~~~~d~-~l~~~~~-~~~~~~~~~~~~la~~C~~~~p~~RP-~m~~V~~~L~~~ 807 (818)
..+ .....++... .+..... ....+....+.+++.+|++.+|++|| ++.++.+.|+..
T Consensus 221 LyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~ 290 (932)
T PRK13184 221 LYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPH 290 (932)
T ss_pred HHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 111 1111111111 1111000 00112234567788899999999995 577788877765
|
|
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-09 Score=112.15 Aligned_cols=109 Identities=23% Similarity=0.257 Sum_probs=65.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CC-cchHHHHhc---------ccCCC--cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HP-QEILSLFSS---------TSDPH--ITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~-~~~l~~~~~---------~~~~~--~~~~ 757 (818)
|+||++++++++|++|||+++.............|+..|+|||. .+ ....+.|+. ...+. ....
T Consensus 129 p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~ 208 (277)
T cd06917 129 AANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAF 208 (277)
T ss_pred HHHEEEcCCCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChh
Confidence 89999999999999999999887554433445679999999991 11 111222321 11111 1000
Q ss_pred ceecccCCCcCccchH-HHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQKIV-QDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~-~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+............. .....+.+++..|++.+|++||++.++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~ 254 (277)
T cd06917 209 RAMMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLK 254 (277)
T ss_pred hhhhccccCCCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence 0000000000000011 13446777888999999999999999975
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-10 Score=119.31 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=63.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc-chHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-EILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+++++.+||+|||+++............+||..|+||| ..+. ...+.|+.. ..+ .....+
T Consensus 124 p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~ 203 (318)
T cd05570 124 LDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDE 203 (318)
T ss_pred HHHeEECCCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHH
Confidence 8999999999999999999986433333344567999999999 1121 122333311 111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh-----HHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM-----QRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m-----~~V~~ 802 (818)
+......... ..+......+.+++..|++.+|++||++ .++++
T Consensus 204 ~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~ 251 (318)
T cd05570 204 LFQSILEDEV-RYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG 251 (318)
T ss_pred HHHHHHcCCC-CCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence 1110000000 0011123445677889999999999999 77764
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-10 Score=118.56 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=60.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+++++.+||+|||+++..... ....+||+.|+||| .. .....+.|+.+ ..+ .....+
T Consensus 129 p~NIli~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~ 205 (291)
T cd05612 129 PENILLDKEGHIKLTDFGFAKKLRDR---TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFG 205 (291)
T ss_pred HHHeEECCCCCEEEEecCcchhccCC---cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 89999999999999999999876432 23457999999999 11 11123334321 111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-----hHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-----MQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-----m~~V~~ 802 (818)
+......... ..+...-..+.++...|++.||.+||+ +.++.+
T Consensus 206 ~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~ 253 (291)
T cd05612 206 IYEKILAGKL-EFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKN 253 (291)
T ss_pred HHHHHHhCCc-CCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhc
Confidence 1111111110 001111234556778999999999995 666654
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-09 Score=112.82 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=67.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+||++++++.+||+|||+++.............|+..|+|||. .+....+.|... .+......+
T Consensus 129 p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~ 208 (256)
T cd08221 129 TLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLN 208 (256)
T ss_pred hHhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHH
Confidence 89999999999999999999877554433445679999999992 111111222211 111111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
.+.....+...+........+.+++..|++.+|++||++.++++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~ 254 (256)
T cd08221 209 LVVKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPTADEVLDQP 254 (256)
T ss_pred HHHHHHcCCCCCCccccCHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence 1111111111111122234566778899999999999999998753
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-10 Score=122.01 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=34.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+++..... .....||+.|+|||
T Consensus 146 p~NIll~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE 185 (329)
T PTZ00263 146 PENLLLDNKGHVKVTDFGFAKKVPDR---TFTLCGTPEYLAPE 185 (329)
T ss_pred HHHEEECCCCCEEEeeccCceEcCCC---cceecCChhhcCHH
Confidence 89999999999999999999876432 22457999999999
|
|
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-09 Score=114.13 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=35.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++++||+|||+++.............++..|+|||
T Consensus 127 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE 169 (284)
T cd07839 127 PQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPD 169 (284)
T ss_pred HHHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcChH
Confidence 8999999999999999999987654433334456889999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-10 Score=120.30 Aligned_cols=104 Identities=23% Similarity=0.345 Sum_probs=64.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC--------CCCcc-hHHHHhccc---------CCCc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--------KHPQE-ILSLFSSTS---------DPHI- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--------~~~~~-~l~~~~~~~---------~~~~- 754 (818)
+.|||+.-++.+|+||||++.-....-...-...||+.||||| -.|+| ..+.|..+. .+..
T Consensus 158 AGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhe 237 (1187)
T KOG0579|consen 158 AGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHE 237 (1187)
T ss_pred ccceEEEecCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccc
Confidence 7899999999999999999754322212223567999999999 56777 344454321 1111
Q ss_pred -cccceec-------ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 -TLTYILD-------QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 -~~~~~~d-------~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+.+.++- |.+..+. .+... +.++-..|+..+|..||+.+++++
T Consensus 238 lnpMRVllKiaKSePPTLlqPS--~Ws~~---F~DfLk~cL~Knp~~Rp~aaqll~ 288 (1187)
T KOG0579|consen 238 LNPMRVLLKIAKSEPPTLLQPS--HWSRS---FSDFLKRCLVKNPRNRPPAAQLLK 288 (1187)
T ss_pred cchHHHHHHHhhcCCCcccCcc--hhhhH---HHHHHHHHHhcCCccCCCHHHHhh
Confidence 1111111 1221111 13333 444555999999999999999764
|
|
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.2e-10 Score=119.77 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=62.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhcccC---------C--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSSTSD---------P--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~~~---------~--~~~~~~ 758 (818)
|+|||+|+++.+||+|||+++.............||++|+||| ... ....+.|+.... + .....+
T Consensus 124 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~ 203 (325)
T cd05594 124 LENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK 203 (325)
T ss_pred CCeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHH
Confidence 8999999999999999999986543333344567999999999 111 112334432211 0 000000
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+......... ..+......+.++...|++.+|++|| ++.++++
T Consensus 204 ~~~~i~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~ 251 (325)
T cd05594 204 LFELILMEEI-RFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ 251 (325)
T ss_pred HHHHHhcCCC-CCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence 0000000000 00111123355677799999999996 8888864
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.9e-10 Score=118.86 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=35.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+++.........+..+||.+|+|||
T Consensus 124 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE 166 (316)
T cd05620 124 LDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPE 166 (316)
T ss_pred HHHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHH
Confidence 8999999999999999999986433333345678999999999
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-09 Score=116.25 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=65.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CC-cchHHHHhcc----------cCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HP-QEILSLFSST----------SDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~-~~~l~~~~~~----------~~~--~~~~~ 757 (818)
|+|||+|+++.+||+|||+++...... ......++..|+|||. .+ +...+.|+.. ..+ .....
T Consensus 152 p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~ 230 (303)
T cd05088 152 ARNILVGENYVAKIADFGLSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA 230 (303)
T ss_pred hheEEecCCCcEEeCccccCcccchhh-hcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChH
Confidence 899999999999999999997432111 1222345678999991 11 1112223211 111 11111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+..+........+.+......+.+++..|++.+|++||++.+++++|+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~ 280 (303)
T cd05088 231 ELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 280 (303)
T ss_pred HHHHHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111111000011122234567888999999999999999999999887
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-09 Score=112.60 Aligned_cols=109 Identities=23% Similarity=0.324 Sum_probs=64.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC-------CCcchHHHHhcc---------cCCCccc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-------HPQEILSLFSST---------SDPHITL- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-------~~~~~l~~~~~~---------~~~~~~~- 756 (818)
|+||++|+++.+||+|||+++.............|+..|+|||. ..+...+.|... ..+....
T Consensus 129 p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~ 208 (262)
T cd06613 129 GANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH 208 (262)
T ss_pred hhhEEECCCCCEEECccccchhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence 89999999999999999999876543323345678999999992 121122333211 1111000
Q ss_pred --cce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 --TYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 --~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... ....+..............+.+++.+|++.+|.+||++.+|+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~ 259 (262)
T cd06613 209 PMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ 259 (262)
T ss_pred HHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 000 0000011000111222345678888999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-09 Score=124.08 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=31.7
Q ss_pred ccccccCCCC----------------cccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEF----------------EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~----------------~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++ .+||+|||+++... ...+..+||.+|+|||
T Consensus 260 P~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~---~~~~~~~gt~~Y~APE 315 (467)
T PTZ00284 260 PENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDER---HSRTAIVSTRHYRSPE 315 (467)
T ss_pred HHHEEEecCCcccccccccccCCCCceEEECCCCccccCc---cccccccCCccccCcH
Confidence 8999998765 49999999886432 2234578999999999
|
|
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-09 Score=115.02 Aligned_cols=43 Identities=30% Similarity=0.301 Sum_probs=35.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE 736 (818)
++||++|+++.+||+|||+++....... ......|+.+|+|||
T Consensus 128 ~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE 171 (288)
T cd07833 128 PENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPE 171 (288)
T ss_pred HHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCc
Confidence 7899999999999999999988754432 334467889999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-09 Score=109.60 Aligned_cols=43 Identities=28% Similarity=0.281 Sum_probs=37.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++..|+||||+||...-.....+..++|.-|-|||
T Consensus 148 PQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPE 190 (323)
T KOG0594|consen 148 PQNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPE 190 (323)
T ss_pred cceEEECCCCcEeeeccchHHHhcCCcccccccEEEeeccCHH
Confidence 9999999999999999999998765555456677999999999
|
|
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-09 Score=109.56 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=34.8
Q ss_pred ccccccCCC-CcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSE-FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~-~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|+|+|.+ +..||||||-||.+..++...+-+ -|..|-|||
T Consensus 153 PqNlLvD~~tg~LKicDFGSAK~L~~~epniSYi-cSRyYRaPE 195 (364)
T KOG0658|consen 153 PQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYI-CSRYYRAPE 195 (364)
T ss_pred hheEEEcCCCCeEEeccCCcceeeccCCCceeEE-EeccccCHH
Confidence 999999988 999999999999987665544433 366899999
|
|
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-09 Score=113.23 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=63.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC---------CcchHHHHhc---------ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH---------PQEILSLFSS---------TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~---------~~~~l~~~~~---------~~~~~~~ 755 (818)
|+||+++.++++||+|||+++.............|+..|+|||.. +....+.|+. ...+...
T Consensus 131 p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~ 210 (282)
T cd06643 131 AGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHE 210 (282)
T ss_pred cccEEEccCCCEEEccccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccc
Confidence 899999999999999999998654332233446799999999921 0011222321 1111110
Q ss_pred --ccceecccCCC--cCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 --LTYILDQRISP--PKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 --~~~~~d~~l~~--~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
..+.+...... .....+......+.+++..|++.+|.+||++.++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~ 262 (282)
T cd06643 211 LNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQH 262 (282)
T ss_pred cCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 00000000000 0000111223456678889999999999999998753
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-09 Score=125.29 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=72.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCc-cccccc--cceeCCC----CCCcchHHHHhc------------ccCCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNR-TLIAGT--YRYIAPA----KHPQEILSLFSS------------TSDPHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~-~~~~gt--~gy~aPE----~~~~~~l~~~~~------------~~~~~~ 754 (818)
++|||+.++..+||||||+||......... ....|+ +.||||| ...+..-+.|+. ..+++.
T Consensus 446 aRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~ 525 (609)
T KOG0200|consen 446 ARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGI 525 (609)
T ss_pred hhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCC
Confidence 689999999999999999999765443222 223333 4599999 111112233432 122221
Q ss_pred c-ccceecccC-CCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 T-LTYILDQRI-SPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~-~~~~~d~~l-~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
. ..+++. .+ .+...+.+..|...+..++..||+.+|++||++.+.++.++..
T Consensus 526 ~~~~~l~~-~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~ 579 (609)
T KOG0200|consen 526 PPTEELLE-FLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKH 579 (609)
T ss_pred CcHHHHHH-HHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence 1 112222 22 2222244566777888999999999999999999999998873
|
|
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-09 Score=114.10 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=66.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCC-cchHHHHhc-----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHP-QEILSLFSS-----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~-~~~l~~~~~-----------~~~~~--~ 754 (818)
|+|||+++++.+|++|||+++.+..... ......++..|+||| ..+ +...+.|+. ...+. .
T Consensus 158 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~ 237 (296)
T cd05095 158 TRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQL 237 (296)
T ss_pred hheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCcccc
Confidence 8999999999999999999987643321 122334567899999 111 111222221 11111 1
Q ss_pred cccceec-------ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 755 TLTYILD-------QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 755 ~~~~~~d-------~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
...+++. ........+.+..+...+.+++.+|++.+|++||+|.+|++.|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~ 296 (296)
T cd05095 238 SDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE 296 (296)
T ss_pred ChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence 1111111 000000001122334567789999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-09 Score=116.44 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=33.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+|++|||+++..... .....||..|+|||
T Consensus 145 p~NIll~~~~~~kL~dfg~~~~~~~~---~~~~~~~~~y~aPE 184 (342)
T cd07879 145 PGNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPE 184 (342)
T ss_pred HHHEEECCCCCEEEeeCCCCcCCCCC---CCCceeeecccChh
Confidence 89999999999999999999865322 23456889999999
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-09 Score=117.04 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=69.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CC-CcchHHHHhc----------c--cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KH-PQEILSLFSS----------T--SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~-~~~~l~~~~~----------~--~~~~~~ 755 (818)
|+|||+++++++||+|||+++....... ......++..|+||| .. +....+.|.. . .+....
T Consensus 162 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 241 (334)
T cd05100 162 ARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP 241 (334)
T ss_pred cceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC
Confidence 8999999999999999999987643321 123344567899999 11 1111222221 1 111111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..++.+........+.+......+.+++..|++.+|++||+|.|+++.|+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~ 294 (334)
T cd05100 242 VEELFKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVL 294 (334)
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHh
Confidence 11111111111110112233456778899999999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-10 Score=121.08 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=62.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||++.++.+||+|||+++............+||++|+||| ..+.+ ..+.|+.. ..+ .....+
T Consensus 124 p~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~ 203 (325)
T cd05602 124 PENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE 203 (325)
T ss_pred HHHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHH
Confidence 8999999999999999999986543333445678999999999 11111 12233211 111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
..+....... .........+.++...|++.+|.+||++.+.+.+
T Consensus 204 ~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ 247 (325)
T cd05602 204 MYDNILNKPL-QLKPNITNSARHLLEGLLQKDRTKRLGAKDDFME 247 (325)
T ss_pred HHHHHHhCCc-CCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHHH
Confidence 1111111100 0011112334556679999999999998754433
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-09 Score=115.33 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=66.6
Q ss_pred ccccccCCCCcccccccccceeccCCC-------CCccccccccceeCCC----CCCcchHHHHh---------cccCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-------SNRTLIAGTYRYIAPA----KHPQEILSLFS---------STSDPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-------~~~~~~~gt~gy~aPE----~~~~~~l~~~~---------~~~~~~ 753 (818)
|+|||+|.++.+||+|||+|+.+.... .......||+.|+||| ...+...+.|+ ....+.
T Consensus 154 p~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~ 233 (294)
T PHA02882 154 PENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPW 233 (294)
T ss_pred HHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 899999999999999999998764321 1123457999999999 11111222232 222221
Q ss_pred ccc---c--------ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 754 ITL---T--------YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 754 ~~~---~--------~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
... . +++ .++.... .....+...+.+++..|++.+|++||++.++.+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~~ 294 (294)
T PHA02882 234 KGFGHNGNLIHAAKCDFI-KRLHEGK-IKIKNANKFIYDFIECVTKLSYEEKPDYDALIKIFD 294 (294)
T ss_pred CccccchHHHHHhHHHHH-HHhhhhh-hccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence 111 0 011 1111100 001123455667888999999999999999998763
|
|
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-09 Score=116.51 Aligned_cols=115 Identities=15% Similarity=0.181 Sum_probs=67.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~--~~~~~ 755 (818)
|+|||+++++++|++|||+++....... ......++..|+||| +..+...+.|+. .. +....
T Consensus 162 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~ 241 (314)
T cd05099 162 ARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIP 241 (314)
T ss_pred ceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999987643221 122233556899999 111111122221 11 11111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..++.+........+.+..+...+.+++.+|++.+|++||++.++++.|+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~ 294 (314)
T cd05099 242 VEELFKLLREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVL 294 (314)
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence 11111110111000112223445667888999999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-09 Score=118.09 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=34.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++..... ...+...||.+|+|||
T Consensus 154 p~NIll~~~~~~kL~DfG~a~~~~~~-~~~~~~~~t~~y~aPE 195 (364)
T cd07875 154 PSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPE 195 (364)
T ss_pred HHHEEECCCCcEEEEeCCCccccCCC-CcccCCcccCCcCCHH
Confidence 89999999999999999999875432 2234457999999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-09 Score=113.40 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhcc----------cCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSST----------SDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~~----------~~~--~~~~~ 757 (818)
|+||++++++.+|++|||+++..... ........+.+|+|||. ......+.|+.. ..+ .....
T Consensus 140 p~nili~~~~~~kl~dfgl~~~~~~~-~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~ 218 (270)
T cd05047 140 ARNILVGENYVAKIADFGLSRGQEVY-VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA 218 (270)
T ss_pred cceEEEcCCCeEEECCCCCccccchh-hhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHH
Confidence 89999999999999999998743211 11122334678999991 111122333311 111 11111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+...........+.+......+.+++..|++.+|.+||++.+++++|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~ 268 (270)
T cd05047 219 ELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 268 (270)
T ss_pred HHHHHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence 11111100000011222334577899999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-09 Score=112.58 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=63.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC--------Ccc-hHHHHhcc---------cCCCc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH--------PQE-ILSLFSST---------SDPHI- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~--------~~~-~l~~~~~~---------~~~~~- 754 (818)
|+||+++.++.+||+|||+++.............|+..|+|||.. +.+ ..+.|... ..+..
T Consensus 138 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~ 217 (292)
T cd06644 138 AGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHE 217 (292)
T ss_pred cceEEEcCCCCEEEccCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcc
Confidence 899999999999999999987653332223445688999999921 111 22333211 11111
Q ss_pred -cccceecccCCCcC--ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 -TLTYILDQRISPPK--KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 -~~~~~~d~~l~~~~--~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.+........ ...+......+.+++..|++.+|++||++.+|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 268 (292)
T cd06644 218 LNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLE 268 (292)
T ss_pred ccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 00000000000000 0011122345677888999999999999999975
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-09 Score=115.05 Aligned_cols=112 Identities=22% Similarity=0.208 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhc---------ccCCCcc-----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSS---------TSDPHIT----- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~~~~~~----- 755 (818)
|+||++++++++||+|||+++..... ......|+..|+|||. .+....+.|.. ...+...
T Consensus 132 p~nil~~~~~~~~l~d~gl~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~ 209 (284)
T cd06620 132 PSNILVNSRGQIKLCDFGVSGELINS--IADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDD 209 (284)
T ss_pred HHHEEECCCCcEEEccCCcccchhhh--ccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhh
Confidence 78999999999999999998765322 2234679999999992 11111222221 1111100
Q ss_pred --------ccceecccCCCcCccc-hHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 --------LTYILDQRISPPKKQK-IVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 --------~~~~~d~~l~~~~~~~-~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+.+...+....... ..+....+.+++..|++.+|++||+|.||+++.--+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~ 270 (284)
T cd06620 210 DGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFI 270 (284)
T ss_pred hhhhhhhHHHHHHHHHhhccCCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcccc
Confidence 0011111111110000 112334577788899999999999999999875433
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-09 Score=113.98 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=63.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC--------Ccc-hHHHHhc---------ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH--------PQE-ILSLFSS---------TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~--------~~~-~l~~~~~---------~~~~~~~ 755 (818)
++||++++++.+||+|||+++.............|+..|+|||.. ..+ ..+.|.. ...+...
T Consensus 149 ~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~ 228 (282)
T cd06636 149 GQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCD 228 (282)
T ss_pred HHHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccc
Confidence 789999999999999999998664332233456799999999921 111 1223321 1111100
Q ss_pred ---cccee--cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 ---LTYIL--DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ---~~~~~--d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+. ........ ........+.+++..|++.+|++||++.|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~ 278 (282)
T cd06636 229 MHPMRALFLIPRNPPPKL--KSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK 278 (282)
T ss_pred cCHHhhhhhHhhCCCCCC--cccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence 00000 00000000 11123346777888999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-09 Score=113.31 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=34.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++++||+|||+++.............++..|+|||
T Consensus 131 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE 173 (291)
T cd07870 131 PQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPD 173 (291)
T ss_pred hHHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCCc
Confidence 8999999999999999999986543332233456789999999
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.4e-10 Score=106.34 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=3.6
Q ss_pred CCCcEEECcCCCCC
Q 003465 149 NNLVELYLSRSNLN 162 (818)
Q Consensus 149 ~~L~~L~Ls~n~l~ 162 (818)
.+|+.|+|++|.++
T Consensus 42 ~~L~~L~Ls~N~I~ 55 (175)
T PF14580_consen 42 DKLEVLDLSNNQIT 55 (175)
T ss_dssp TT--EEE-TTS--S
T ss_pred cCCCEEECCCCCCc
Confidence 33444444444443
|
|
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.90 E-value=6e-10 Score=120.19 Aligned_cols=43 Identities=28% Similarity=0.457 Sum_probs=35.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++............+||.+|+|||
T Consensus 124 p~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE 166 (330)
T cd05586 124 PENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPE 166 (330)
T ss_pred HHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHH
Confidence 8999999999999999999986543333345578999999999
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-10 Score=127.34 Aligned_cols=245 Identities=30% Similarity=0.364 Sum_probs=126.2
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.+..+..+++..|.+.. +-..+..+.+|+.|++.+|+|.. +...+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 34444555555555542 22334555556666666666552 222245556666666666665543 234455556666
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCC-CCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEcccccc
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIA-STIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNL 281 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 281 (818)
++++|.++.. ..+..+++|+.+++++|++...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 6666666532 234445666666666666553322 1 34556666666666665522 2333344444446666655
Q ss_pred CCcCCcccCCCCC--CCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCccccc---
Q 003465 282 TGPIPSTLGRLTS--LSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGP--- 356 (818)
Q Consensus 282 ~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--- 356 (818)
+..-+ +..+.. |+.+++++|.+.. .+..+..+..+..|++.+|++...- .+...+.+..+....|.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhh
Confidence 53211 122222 6666677766652 2234555666677777766665321 133344555555555554421
Q ss_pred CCc-CcCCCCCCCEEeccCCcCCCCC
Q 003465 357 IPL-TIGDLTNLIYLDLSLNQLSGPI 381 (818)
Q Consensus 357 ~~~-~l~~l~~L~~L~Ls~n~l~~~~ 381 (818)
... .....+.++.+.+..|.+....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hccccccccccccccccccCcccccc
Confidence 111 1345567777777777665443
|
|
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-09 Score=116.61 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=67.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+|||+++++++|++|||+++....... ......+++.|+|||. ......+.|.. ...+. ..
T Consensus 207 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~ 286 (343)
T cd05103 207 ARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 286 (343)
T ss_pred cCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCcc
Confidence 8999999999999999999987643322 1223456788999991 11111222321 11111 00
Q ss_pred cc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.. ..+........ +......+.+++..|++.+|++||+|.||++.|+.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~ 340 (343)
T cd05103 287 IDEEFCRRLKEGTRMRA---PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 340 (343)
T ss_pred ccHHHHHHHhccCCCCC---CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 00 00111111111 1112235778899999999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-09 Score=117.25 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=61.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc-chHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-EILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+++++.+||+|||+++.............||..|+||| ..+. ...+.|+.. ..+ .....+
T Consensus 124 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~ 203 (316)
T cd05619 124 LDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEE 203 (316)
T ss_pred HHHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999986433333344567999999999 1221 123334321 111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChH-HHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQ-RVS 801 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~-~V~ 801 (818)
+......... ..+......+.++...|++.+|++||++. ++.
T Consensus 204 ~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~ 246 (316)
T cd05619 204 LFQSIRMDNP-CYPRWLTREAKDILVKLFVREPERRLGVKGDIR 246 (316)
T ss_pred HHHHHHhCCC-CCCccCCHHHHHHHHHHhccCHhhcCCChHHHH
Confidence 1110000000 00111122345677799999999999997 553
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.2e-10 Score=119.57 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=60.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+||++|.++.+||+|||+++.............||++|+||| ..+.+ ..+.|+.. ..+ .....+
T Consensus 124 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~ 203 (321)
T cd05603 124 PENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQ 203 (321)
T ss_pred HHHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHH
Confidence 8999999999999999999986433333345567999999999 12211 22233321 111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQ 798 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~ 798 (818)
+.+..+.... ..+......+.++...|++.+|++||+..
T Consensus 204 ~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~ 242 (321)
T cd05603 204 MYDNILHKPL-QLPGGKTVAACDLLVGLLHKDQRRRLGAK 242 (321)
T ss_pred HHHHHhcCCC-CCCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence 1111111111 11112233466788899999999999754
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-09 Score=112.47 Aligned_cols=43 Identities=30% Similarity=0.393 Sum_probs=35.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++++||+|||+++.............|+..|+|||
T Consensus 128 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE 170 (286)
T cd07847 128 PENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPE 170 (286)
T ss_pred hhhEEEcCCCcEEECccccceecCCCcccccCcccccccCCHH
Confidence 8999999999999999999998754432333456888999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-09 Score=117.52 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=34.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++..... .......||++|+|||
T Consensus 185 p~Nill~~~~~~kl~DfG~a~~~~~~-~~~~~~~gt~~y~aPE 226 (357)
T PHA03209 185 TENIFINDVDQVCIGDLGAAQFPVVA-PAFLGLAGTVETNAPE 226 (357)
T ss_pred HHHEEECCCCCEEEecCccccccccC-cccccccccccccCCe
Confidence 89999999999999999999864322 2234567999999999
|
|
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-09 Score=118.30 Aligned_cols=43 Identities=28% Similarity=0.481 Sum_probs=35.1
Q ss_pred ccccccCCCCcccccccccceeccCCC-----------------------------CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-----------------------------SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-----------------------------~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++...... .......||..|+|||
T Consensus 129 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE 200 (350)
T cd05573 129 PDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPE 200 (350)
T ss_pred HHHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHH
Confidence 899999999999999999998764432 1223467999999999
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-09 Score=118.89 Aligned_cols=43 Identities=28% Similarity=0.299 Sum_probs=34.9
Q ss_pred ccccccCCCCcccccccccceeccCC-CCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD-SSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~-~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+|+..... .......+||++|+|||
T Consensus 210 P~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE 253 (391)
T PHA03212 210 AENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPE 253 (391)
T ss_pred hHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChh
Confidence 89999999999999999999864322 22234568999999999
|
|
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-09 Score=113.84 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=63.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCCcc-----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPHIT----- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~~~----- 755 (818)
|+||++|+++.+||+|||+++.+...........||++|+||| ..+.+ ..+.|+. ...+...
T Consensus 125 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~ 204 (280)
T cd05608 125 PENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV 204 (280)
T ss_pred HHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcch
Confidence 8999999999999999999987755443344567999999999 11111 2223321 1111100
Q ss_pred -ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 756 -LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 756 -~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
..++......... ..+......+.+++..|++.+|++|| ++.++.+
T Consensus 205 ~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~ 256 (280)
T cd05608 205 ENKELKQRILNDSV-TYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT 256 (280)
T ss_pred hHHHHHHhhcccCC-CCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence 0011111111111 11122334566788899999999999 5566653
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-09 Score=111.32 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=63.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC--------CCcc-hHHHHhc---------ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK--------HPQE-ILSLFSS---------TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~--------~~~~-~l~~~~~---------~~~~~~~ 755 (818)
|+||+++.++.+|++|||++..............|+.+|+|||. .+.+ ..+.|.. ...+...
T Consensus 131 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~ 210 (280)
T cd06611 131 AGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHE 210 (280)
T ss_pred hhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCccc
Confidence 89999999999999999998765443333345679999999992 1111 1222321 1111110
Q ss_pred c--cceecccCCCc--CccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 L--TYILDQRISPP--KKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ~--~~~~d~~l~~~--~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
. .+.+....... ....+......+.+++..|++.+|++||++.+|++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (280)
T cd06611 211 LNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH 262 (280)
T ss_pred CCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence 0 01000000000 000111222356677889999999999999999754
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-09 Score=113.13 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=34.1
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
++||++|. ++.+|++|||+++.........+...+++.|+|||
T Consensus 138 ~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE 181 (295)
T cd07837 138 PQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPE 181 (295)
T ss_pred hHHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCChH
Confidence 89999999 89999999999987643322233446788999999
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-09 Score=114.07 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=63.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CCc-chHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HPQ-EILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~~-~~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+||++++++++|++|||+++....+........|+.+|+|||. .+. ...+.|... ..+ .....+
T Consensus 143 p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~ 222 (285)
T cd06648 143 SDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQ 222 (285)
T ss_pred hhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHH
Confidence 89999999999999999998866544333334568999999991 111 112223211 111 100000
Q ss_pred ee---cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 IL---DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~---d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+ ........ .........+.+++..|++.+|++||++.++++
T Consensus 223 ~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~ 268 (285)
T cd06648 223 AMKRIRDNLPPKL-KNLHKVSPRLRSFLDRMLVRDPAQRATAAELLN 268 (285)
T ss_pred HHHHHHhcCCCCC-cccccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence 00 00000000 011112345777888999999999999999885
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.1e-09 Score=112.66 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=33.2
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++|+ +..+||+|||+++.........+...|+..|+|||
T Consensus 130 p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE 173 (294)
T PLN00009 130 PQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPE 173 (294)
T ss_pred cceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHH
Confidence 89999985 56789999999987644333334456889999999
|
|
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-09 Score=116.29 Aligned_cols=110 Identities=17% Similarity=0.249 Sum_probs=75.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc-----------ccCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS-----------TSDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~-----------~~~~~~~~~~ 758 (818)
++||+|..+..+|++|||+||.+..+......++||+.||.|| ..|+. .-+.|.- ..+....+..
T Consensus 134 ~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~ 213 (426)
T KOG0589|consen 134 CANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSE 213 (426)
T ss_pred hhhhhccccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHH
Confidence 8999999999999999999999987766677889999999999 33433 2334532 2222233333
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.+.........+.+...-..+-.++-.|++.+|+.||+..+++.+
T Consensus 214 Li~ki~~~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~ 258 (426)
T KOG0589|consen 214 LILKINRGLYSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR 258 (426)
T ss_pred HHHHHhhccCCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence 333333322212233334445556669999999999999999876
|
|
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-09 Score=112.80 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=34.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++.............++..|+|||
T Consensus 132 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE 174 (301)
T cd07873 132 PQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPD 174 (301)
T ss_pred HHHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCcH
Confidence 8999999999999999999987644333334456789999999
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-09 Score=113.39 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=63.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhcc---------cCCC--cccc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSST---------SDPH--ITLT- 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~~---------~~~~--~~~~- 757 (818)
++||++|+++++|++|||+++.............|+.+|+|||. .+....+.|... ..+. ....
T Consensus 144 p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~ 223 (292)
T cd06657 144 SDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 223 (292)
T ss_pred HHHEEECCCCCEEEcccccceecccccccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 89999999999999999998876543322344578999999992 111122233211 1110 0000
Q ss_pred --ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 --YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 --~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+...+.... .........+.++...|++.+|.+||++.+|++
T Consensus 224 ~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~ 269 (292)
T cd06657 224 AMKMIRDNLPPKL-KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 269 (292)
T ss_pred HHHHHHhhCCccc-CCcccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence 11111111111 001112234556777999999999999999986
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-09 Score=111.26 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---ccccccccceeCCCC----CCcchHHHHh---------cccCCCcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPAK----HPQEILSLFS---------STSDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---~~~~~gt~gy~aPE~----~~~~~l~~~~---------~~~~~~~~-- 755 (818)
|+||++++++.+||+|||+++........ .....|+..|+|||. ......+.|+ ....+...
T Consensus 132 p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~ 211 (263)
T cd06625 132 GANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE 211 (263)
T ss_pred HHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccc
Confidence 89999999999999999999876432211 134568899999991 1111222332 11111100
Q ss_pred -ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 -LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 -~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
...+............+......+.++...|++.+|.+||++.++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~ 260 (263)
T cd06625 212 AMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRH 260 (263)
T ss_pred hHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence 000000000000001122233456677789999999999999999864
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-09 Score=112.15 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=34.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++...... ..+...||..|+|||
T Consensus 136 p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE 177 (288)
T cd07863 136 PENILVTSGGQVKLADFGLARIYSCQM-ALTPVVVTLWYRAPE 177 (288)
T ss_pred HHHEEECCCCCEEECccCccccccCcc-cCCCccccccccCch
Confidence 899999999999999999998764322 234467899999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.5e-09 Score=111.57 Aligned_cols=43 Identities=33% Similarity=0.352 Sum_probs=35.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++++||+|||+++.............+++.|+|||
T Consensus 130 p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE 172 (298)
T cd07841 130 PNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPE 172 (298)
T ss_pred hhhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeCHH
Confidence 8999999999999999999987755433334456788999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-09 Score=117.72 Aligned_cols=43 Identities=33% Similarity=0.563 Sum_probs=35.4
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++...... ......+||.+|+|||
T Consensus 133 p~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE 176 (332)
T cd05614 133 LENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPE 176 (332)
T ss_pred HHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHH
Confidence 899999999999999999998754332 2334568999999999
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-10 Score=126.54 Aligned_cols=246 Identities=30% Similarity=0.311 Sum_probs=116.2
Q ss_pred CCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEE
Q 003465 171 HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSL 250 (818)
Q Consensus 171 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 250 (818)
.+..++.++++.|.+.. +-..+..+++|+.|++.+|+|... ...+..+++|++|++++|.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I----------------- 130 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKI----------------- 130 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccc-----------------
Confidence 34455555555555542 122344555555555555555432 11133444444444444444
Q ss_pred EccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCc-hhhcCCCCCCeeeccCCcC
Q 003465 251 DLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIP-PTLSHLTRLTTLKLFSNQI 329 (818)
Q Consensus 251 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l 329 (818)
+.. ..+..++.|+.|++.+|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+
T Consensus 131 -------~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 131 -------TKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred -------ccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 422 1233344455555555555422 223335555555555555543322 1 34455566666666655
Q ss_pred CCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCC--CCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCc
Q 003465 330 NGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTN--LIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPS 407 (818)
Q Consensus 330 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 407 (818)
... ..+..+..+..+++..|.+...-+ +..+.. |+.+++++|.+... +..+..+..+..|++.+|++... .
T Consensus 199 ~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~ 271 (414)
T KOG0531|consen 199 REI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--E 271 (414)
T ss_pred hcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--c
Confidence 421 122223333444555555542211 111222 56666666666522 23455556666666666666533 2
Q ss_pred cccCCCCCCEEecccCcCccc---CCcc-ccCCCCCCEEECcCCcCCccCC
Q 003465 408 ELMNCFSLQSLILSNNSLTGR---IPSE-IRNLSYLHELDLSLNFISGMTP 454 (818)
Q Consensus 408 ~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~Ls~N~l~~~~p 454 (818)
.+.....+..+....|.+... .... ....+.++.+.+..|++....+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 272 GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 233445555555666655421 1111 3445666666666666655433
|
|
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-09 Score=115.06 Aligned_cols=43 Identities=30% Similarity=0.427 Sum_probs=34.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++....... ......||..|+|||
T Consensus 134 p~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE 179 (336)
T cd07849 134 PSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPE 179 (336)
T ss_pred HHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChH
Confidence 8999999999999999999987643221 123457899999999
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-09 Score=102.53 Aligned_cols=105 Identities=28% Similarity=0.320 Sum_probs=23.3
Q ss_pred cceEEEccCCCCCCCCCcccc-CCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeec
Q 003465 246 NLNSLDLSSKQLSGPLPQEIG-YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKL 324 (818)
Q Consensus 246 ~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 324 (818)
++++|+|++|.|+.. +.++ .+.+|+.|++++|.++.. +.+..++.|+.|++++|.++...+.....+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 344444444444421 2232 244455555555554422 12444455555555555554322211123455555555
Q ss_pred cCCcCCCCc-CccccCCCCCCEEEcCCCccc
Q 003465 325 FSNQINGSI-PLGIGNLENLERVDMSSNKLE 354 (818)
Q Consensus 325 ~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~ 354 (818)
++|++...- -..+..+++|+.|++.+|.+.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555554211 122344555555555555554
|
|
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-09 Score=111.85 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=33.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++++|++|||+++.............++..|+|||
T Consensus 131 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE 173 (291)
T cd07844 131 PQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPD 173 (291)
T ss_pred HHHEEEcCCCCEEECccccccccCCCCccccccccccccCCcH
Confidence 8999999999999999999986533222223345788999999
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-09 Score=107.61 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=42.3
Q ss_pred ccccccCCCCcccccccccceeccCC--CCCccccccccceeCCC-----CCCcchHHHHhc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD--SSNRTLIAGTYRYIAPA-----KHPQEILSLFSS 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~--~~~~~~~~gt~gy~aPE-----~~~~~~l~~~~~ 748 (818)
|+|+|++++...||+||||||..... ...+|.-+-|..|-||| ..-+..++.|+.
T Consensus 153 PsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSv 214 (359)
T KOG0660|consen 153 PSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSV 214 (359)
T ss_pred hhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhh
Confidence 89999999999999999999988543 22356677899999999 222335666753
|
|
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-09 Score=112.25 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=62.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC------CC-cchHHHHhcc---------cCCCccc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK------HP-QEILSLFSST---------SDPHITL- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~------~~-~~~l~~~~~~---------~~~~~~~- 756 (818)
|+||++++++++|++|||+++..... ....|+.+|+|||. .. ....+.|..+ ..+....
T Consensus 143 p~nIl~~~~~~~kL~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~ 218 (307)
T cd06607 143 AGNILLTEPGTVKLADFGSASLVSPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN 218 (307)
T ss_pred cccEEECCCCCEEEeecCcceecCCC----CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCcc
Confidence 89999999999999999999865322 24568899999992 11 1122223211 1110000
Q ss_pred -cce-ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 757 -TYI-LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 757 -~~~-~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
... ...................+.++...|++.+|++||+|.+|+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~ 267 (307)
T cd06607 219 AMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKH 267 (307)
T ss_pred HHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence 000 00000000000112234456778889999999999999999864
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-09 Score=117.66 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=69.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHhc----------ccCCCcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFSS----------TSDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~~----------~~~~~~~-- 755 (818)
|+|||+++++.+||+|||+++....... ......|+..|+|||. ..+...+.|+. ...+...
T Consensus 265 p~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~ 344 (400)
T cd05105 265 ARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMI 344 (400)
T ss_pred hHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccc
Confidence 7899999999999999999987644322 1233457789999991 11112222321 1111100
Q ss_pred ccceecccCC-CcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRIS-PPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~-~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+.+-..+. +.....+......+.+++..|++.+|++||+|.+|+++|+++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l 397 (400)
T cd05105 345 VDSTFYNKIKSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESL 397 (400)
T ss_pred hhHHHHHHHhcCCCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHH
Confidence 0000000000 000011223445678899999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-09 Score=116.76 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=35.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++............+||.+|+|||
T Consensus 124 p~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE 166 (329)
T cd05588 124 LDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPE 166 (329)
T ss_pred HHHeEECCCCCEEECcCccccccccCCCccccccCCccccCHH
Confidence 8999999999999999999985433333344578999999999
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-09 Score=115.00 Aligned_cols=43 Identities=30% Similarity=0.419 Sum_probs=35.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+++.+...... .....||+.|+|||
T Consensus 130 p~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE 173 (330)
T cd05601 130 PENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPE 173 (330)
T ss_pred hHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHH
Confidence 89999999999999999999877544322 23457999999999
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.6e-10 Score=118.32 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=61.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhcccC---------C--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSSTSD---------P--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~~~---------~--~~~~~~ 758 (818)
|+|||+++++.+||+|||+++.............||..|+||| ..+ ....+.|+.... + .....+
T Consensus 126 p~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~ 205 (318)
T cd05582 126 PENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKE 205 (318)
T ss_pred HHHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHH
Confidence 8999999999999999999987654433445578999999999 111 112333432211 0 000001
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQR 799 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~ 799 (818)
..+....... ..+......+.++...|++.+|++||++.+
T Consensus 206 ~~~~i~~~~~-~~p~~~~~~~~~li~~~l~~~P~~R~~a~~ 245 (318)
T cd05582 206 TMTMILKAKL-GMPQFLSPEAQSLLRALFKRNPANRLGAGP 245 (318)
T ss_pred HHHHHHcCCC-CCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence 1111000000 001111234556777999999999999655
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-09 Score=110.92 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=62.8
Q ss_pred ccccccCCCC-cccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCCC--cccc
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDPH--ITLT 757 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~~--~~~~ 757 (818)
++||++|++. .+|++|||.++.............|++.|+||| ...+...+.|.. ...+. ....
T Consensus 129 ~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~ 208 (257)
T cd08225 129 SQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLH 208 (257)
T ss_pred HHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHH
Confidence 7899999885 579999999987654433333456899999999 212222223321 11111 1111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
+.+.........+........+.++..+|++.+|++||+|.+|++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~ 254 (257)
T cd08225 209 QLVLKICQGYFAPISPNFSRDLRSLISQLFKVSPRDRPSITSILKR 254 (257)
T ss_pred HHHHHHhcccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence 1111111111000111122346677789999999999999999763
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-09 Score=110.03 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=62.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CC-CcchHHHHhcc---------cCCCcccc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KH-PQEILSLFSST---------SDPHITLT-- 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~-~~~~l~~~~~~---------~~~~~~~~-- 757 (818)
++||++++++.+||+|||+++...... ......|+..|+||| .. +....+.|+.. ..+.....
T Consensus 130 ~~ni~~~~~~~~kl~d~~~~~~~~~~~-~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~ 208 (258)
T cd06632 130 GANILVDTNGVVKLADFGMAKQVVEFS-FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGV 208 (258)
T ss_pred HHHEEECCCCCEEEccCccceeccccc-cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHH
Confidence 799999999999999999998764333 234466899999999 22 22222333211 11110000
Q ss_pred ceecccCC-CcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRIS-PPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~-~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+.+..... ......+......+.++..+|++.+|.+||+|.++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 254 (258)
T cd06632 209 AAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLE 254 (258)
T ss_pred HHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence 00000000 0000011112244566778999999999999999875
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-09 Score=109.46 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=61.3
Q ss_pred ccccccCCCCc-------ccccccccceeccCCCCCccccccccceeCCCCC----C-cchHHHHhcc----------cC
Q 003465 694 FNNILLNSEFE-------AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH----P-QEILSLFSST----------SD 751 (818)
Q Consensus 694 ~~NILLd~~~~-------~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~----~-~~~l~~~~~~----------~~ 751 (818)
|+|||++.++. +|++|||+++.... .....|+.+|+|||.. . ....+.|+.. ..
T Consensus 133 p~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~ 208 (262)
T cd05077 133 TKNILLAREGIDGECGPFIKLSDPGIPITVLS----RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEI 208 (262)
T ss_pred cccEEEecCCccCCCCceeEeCCCCCCccccC----cccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCC
Confidence 89999987764 89999999876532 1234688899999921 1 1122333211 11
Q ss_pred CCc--cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 752 PHI--TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 752 ~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
+.. ...+. +....... .........+.+++..|++.+|++||+|.++++.+.
T Consensus 209 p~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~~ 262 (262)
T cd05077 209 PLKDKTLAEK-ERFYEGQC-MLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRDIN 262 (262)
T ss_pred CCCCcchhHH-HHHHhcCc-cCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHhcC
Confidence 110 00000 00000000 001112345677888999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-09 Score=109.67 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=62.4
Q ss_pred ccccccCCC-CcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcc-----------cCCCcccc
Q 003465 694 FNNILLNSE-FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSST-----------SDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~-~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~-----------~~~~~~~~ 757 (818)
++||+++++ ..+|++|||+++...... ......|+.+|+||| +.++...+.|... .+......
T Consensus 129 ~~nil~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~ 207 (256)
T cd08220 129 TQNILLDKHKMVVKIGDFGISKILSSKS-KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLP 207 (256)
T ss_pred HHHEEEcCCCCEEEEccCCCceecCCCc-cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchH
Confidence 889999854 568999999998764432 223456899999999 2111112223211 11111111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
............+.+......+.++...|++.+|++||+|.|+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~ 252 (256)
T cd08220 208 ALVLKIMSGTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMA 252 (256)
T ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 111111111110111123345667888999999999999999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.4e-09 Score=110.71 Aligned_cols=43 Identities=33% Similarity=0.318 Sum_probs=35.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++.............++..|+|||
T Consensus 134 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE 176 (293)
T cd07843 134 TSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPE 176 (293)
T ss_pred HHHEEECCCCcEEEeecCceeeccCCccccccccccccccCch
Confidence 8999999999999999999997754433334456788999999
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.8e-09 Score=110.45 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=64.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~~~--~~~~~~ 758 (818)
++||+++.++.+||+|||++..............|+..|+|||. ..+...+.|.. ...+ .....+
T Consensus 143 p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~ 222 (293)
T cd06647 143 SDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR 222 (293)
T ss_pred HHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhh
Confidence 78999999999999999998876544333344578999999991 11112223321 1111 111001
Q ss_pred eecccC-CCcC-ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 ILDQRI-SPPK-KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~~d~~l-~~~~-~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.+.... .+.. ...+......+.+++..|++.+|++||++.+++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h 269 (293)
T cd06647 223 ALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH 269 (293)
T ss_pred heeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 111000 0110 00111223346678889999999999999999864
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-09 Score=122.24 Aligned_cols=108 Identities=24% Similarity=0.301 Sum_probs=67.3
Q ss_pred ccccccCCCCcccccccccceecc-------C---------C--CCCccccccccceeCCC------CCCcc-hHHHHh-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLN-------S---------D--SSNRTLIAGTYRYIAPA------KHPQE-ILSLFS- 747 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~-------~---------~--~~~~~~~~gt~gy~aPE------~~~~~-~l~~~~- 747 (818)
|.||+||++..+||+|||+|.... . + ....|..+||.-|+||| +.+++ .++.++
T Consensus 725 P~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSL 804 (1351)
T KOG1035|consen 725 PRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSL 804 (1351)
T ss_pred cceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHH
Confidence 899999999999999999998731 0 0 11346788999999999 11233 222221
Q ss_pred -----cccCCCcc-------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 748 -----STSDPHIT-------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 748 -----~~~~~~~~-------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...++.++ +..+-++.++.+. .....++..-.+++.+.++.||.+|||+.|+++
T Consensus 805 GIVlFEM~yPF~TsMERa~iL~~LR~g~iP~~~-~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~ 870 (1351)
T KOG1035|consen 805 GIVLFEMLYPFGTSMERASILTNLRKGSIPEPA-DFFDPEHPEEASLIRWLLSHDPSKRPTATELLN 870 (1351)
T ss_pred HHHHHHHhccCCchHHHHHHHHhcccCCCCCCc-ccccccchHHHHHHHHHhcCCCccCCCHHHHhh
Confidence 11111111 1222233443331 123344555566778999999999999999875
|
|
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-09 Score=111.32 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=64.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC----CcchHHHHh---------cccCCCcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH----PQEILSLFS---------STSDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~----~~~~l~~~~---------~~~~~~~~-- 755 (818)
|+||+++++..+||+|||+++.+.... ......|+..|+||| .. .+...+.|. ....+...
T Consensus 136 p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~ 214 (288)
T cd06616 136 PSNILLDRNGNIKLCDFGISGQLVDSI-AKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN 214 (288)
T ss_pred HHHEEEccCCcEEEeecchhHHhccCC-ccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc
Confidence 889999999999999999998664332 223346899999999 11 111222232 11111110
Q ss_pred -----ccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 -----LTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 -----~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
+.++.. +.+... ........+.+++..|++.+|++||++.+|++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~ 267 (288)
T cd06616 215 SVFDQLTQVVKGDPPILSNS---EEREFSPSFVNFINLCLIKDESKRPKYKELLEH 267 (288)
T ss_pred hHHHHHhhhcCCCCCcCCCc---CCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 011110 111111 111234456778889999999999999999863
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-09 Score=109.46 Aligned_cols=110 Identities=21% Similarity=0.291 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC----CcchHHHHhc---------ccCCC--c---c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH----PQEILSLFSS---------TSDPH--I---T 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~----~~~~l~~~~~---------~~~~~--~---~ 755 (818)
++||+++.++.+|++|||+++.............|+..|+|||.. .+...+.|.. ...+. . .
T Consensus 128 ~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~ 207 (264)
T cd06623 128 PSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPS 207 (264)
T ss_pred HHHEEECCCCCEEEccCccceecccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccC
Confidence 789999999999999999999875544433456789999999921 1111222321 11111 0 0
Q ss_pred ccceecccCCCcCccchHH-HHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 LTYILDQRISPPKKQKIVQ-DIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~-~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
..+.+...........+.. ....+.++...|++.+|++||++.++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~ 256 (264)
T cd06623 208 FFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQH 256 (264)
T ss_pred HHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 0111111111111011122 34566778889999999999999999863
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.9e-09 Score=111.36 Aligned_cols=43 Identities=28% Similarity=0.291 Sum_probs=34.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+|++|||+++.........+...++..|+|||
T Consensus 136 p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE 178 (309)
T cd07845 136 VSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPE 178 (309)
T ss_pred HHHEEECCCCCEEECccceeeecCCccCCCCcccccccccChh
Confidence 8999999999999999999997754433333445688999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-09 Score=117.91 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=33.2
Q ss_pred ccccccCCCC-cccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.+. .+||+|||+|+.+..... .....||.+|+|||
T Consensus 198 p~NILl~~~~~~vkL~DFGla~~~~~~~~-~~~~~~t~~y~aPE 240 (440)
T PTZ00036 198 PQNLLIDPNTHTLKLCDFGSAKNLLAGQR-SVSYICSRFYRAPE 240 (440)
T ss_pred HHHEEEcCCCCceeeeccccchhccCCCC-cccCCCCcCccCHH
Confidence 8999999664 799999999997644322 23456899999999
|
|
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-09 Score=116.81 Aligned_cols=43 Identities=33% Similarity=0.377 Sum_probs=35.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE 736 (818)
++|||++.++.+||+|||+++....... .....+||.+|+|||
T Consensus 288 P~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE 332 (461)
T PHA03211 288 TENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPE 332 (461)
T ss_pred HHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHH
Confidence 8999999999999999999997644322 223567999999999
|
|
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=98.83 E-value=5e-09 Score=109.25 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=62.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC------CccccccccceeCCCC----CCcchHHHHh---------cccCC--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS------NRTLIAGTYRYIAPAK----HPQEILSLFS---------STSDP-- 752 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~------~~~~~~gt~gy~aPE~----~~~~~l~~~~---------~~~~~-- 752 (818)
|+||++++++.+||+|||+++....... ......|+..|+|||. .+....+.|. ....+
T Consensus 134 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~ 213 (267)
T cd06628 134 GANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFP 213 (267)
T ss_pred HHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCC
Confidence 8999999999999999999987753211 1123468899999991 1111122232 11111
Q ss_pred Ccc-ccceec--ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 HIT-LTYILD--QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 ~~~-~~~~~d--~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... ...+.. ....... +......+..+...|++.+|.+||++.||++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 263 (267)
T cd06628 214 DCTQLQAIFKIGENASPEI---PSNISSEAIDFLEKTFEIDHNKRPTAAELLK 263 (267)
T ss_pred CccHHHHHHHHhccCCCcC---CcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence 100 000000 0011111 1223345566777999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-09 Score=113.30 Aligned_cols=108 Identities=16% Similarity=0.124 Sum_probs=61.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCCC--cccc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDPH--ITLT- 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~~--~~~~- 757 (818)
|+||++|++.++||+|||+++....... .....|+..|+||| ...+...+.|.. ...+. ....
T Consensus 130 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~ 208 (285)
T cd05605 130 PENILLDDYGHIRISDLGLAVEIPEGET-IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKV 208 (285)
T ss_pred HHHEEECCCCCEEEeeCCCceecCCCCc-cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhh
Confidence 8999999999999999999987643322 23457999999999 111111122321 11111 0000
Q ss_pred --ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 758 --YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 758 --~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+.+...+.......+......+.+++..|++.||++|| ++.++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~ 260 (285)
T cd05605 209 KREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKA 260 (285)
T ss_pred HHHHHHHHhhhcccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence 00111111100011112234566788899999999999 6777754
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.9e-09 Score=109.97 Aligned_cols=43 Identities=37% Similarity=0.455 Sum_probs=34.5
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE 736 (818)
++||++++++.+||+|||+++...... .......++..|+|||
T Consensus 144 p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE 187 (302)
T cd07864 144 CSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPE 187 (302)
T ss_pred HHHEEECCCCcEEeCcccccccccCCcccccccceeccCccChH
Confidence 789999999999999999998775443 2223445788999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-09 Score=115.58 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=67.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCC-cchHHHHhcc------------cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHP-QEILSLFSST------------SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~------------~~~~~~ 755 (818)
++|||++++.++|++|||+++....... ......|+..|+||| ..+ ....+.|... .+....
T Consensus 267 p~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~ 346 (401)
T cd05107 267 ARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELP 346 (401)
T ss_pred cceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 7899999999999999999987643321 122345788999999 111 1122333211 111101
Q ss_pred cc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.. +.+........ +......+.+++..||+.+|.+||+|++|++.|+++
T Consensus 347 ~~~~~~~~~~~~~~~~~---p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~ 399 (401)
T cd05107 347 MNEQFYNAIKRGYRMAK---PAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL 399 (401)
T ss_pred chHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 11 11111111111 112335677888899999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-09 Score=116.67 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=35.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+++....... .....+||+.|+|||
T Consensus 170 p~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE 213 (370)
T cd05596 170 PDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPE 213 (370)
T ss_pred HHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHH
Confidence 8999999999999999999987654322 234567999999999
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-09 Score=117.01 Aligned_cols=40 Identities=30% Similarity=0.502 Sum_probs=34.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++++||+|||+++..... ....+||++|+|||
T Consensus 159 p~NILl~~~~~ikL~DFG~a~~~~~~---~~~~~gt~~y~aPE 198 (340)
T PTZ00426 159 PENLLLDKDGFIKMTDFGFAKVVDTR---TYTLCGTPEYIAPE 198 (340)
T ss_pred HHHEEECCCCCEEEecCCCCeecCCC---cceecCChhhcCHH
Confidence 89999999999999999999876432 23467999999999
|
|
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-09 Score=109.18 Aligned_cols=106 Identities=21% Similarity=0.166 Sum_probs=62.1
Q ss_pred ccccccCCCCcccccccccceeccCC------CCCccccccccceeCCCC----CCcchHHHHhc---------ccCCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD------SSNRTLIAGTYRYIAPAK----HPQEILSLFSS---------TSDPHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~------~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~~~~~ 754 (818)
|+||++|+++.+|++|||+++..... ........|+.+|+|||. ......+.|.. ...+..
T Consensus 130 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~ 209 (265)
T cd06631 130 GNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLA 209 (265)
T ss_pred HHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccc
Confidence 89999999999999999999865321 111234578999999992 11112223321 111111
Q ss_pred cccc------eecc-cCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 TLTY------ILDQ-RISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~~~~------~~d~-~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.... +... ...... +......+..++.+|++.+|++||+|.+|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~ 261 (265)
T cd06631 210 SMDRLAAMFYIGAHRGLMPRL---PDSFSAAAIDFVTSCLTRDQHERPSALQLLR 261 (265)
T ss_pred cCChHHHHHHhhhccCCCCCC---CCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 1000 0000 000111 1122344566778999999999999999875
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-09 Score=108.89 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=63.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCCCccc--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDPHITL--TY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~~~~~--~~ 758 (818)
|+||++++++.+||+|||.++....... .....|+.+|+||| ..++...+.|.. ...+.... .+
T Consensus 126 p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 204 (253)
T cd05122 126 AANILLTSDGEVKLIDFGLSAQLSDTKA-RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMK 204 (253)
T ss_pred HHHEEEccCCeEEEeecccccccccccc-ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHH
Confidence 8999999999999999999987654432 34567899999999 111111222221 11111000 00
Q ss_pred e---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 I---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ......... .........+.+++..|++.+|++||++.+|++
T Consensus 205 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~ 250 (253)
T cd05122 205 ALFKIATNGPPGL-RNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLK 250 (253)
T ss_pred HHHHHHhcCCCCc-CcccccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0 000000000 001111345677888999999999999999875
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.7e-09 Score=107.25 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=33.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE 736 (818)
|+||++++++++|++|||+++....... ......|+.+|+|||
T Consensus 128 p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE 172 (269)
T cd05087 128 LRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPE 172 (269)
T ss_pred cceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHh
Confidence 8999999999999999999986533321 123456788999999
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.4e-09 Score=112.76 Aligned_cols=43 Identities=30% Similarity=0.378 Sum_probs=34.2
Q ss_pred cccccc----CCCCcccccccccceeccCCCC---CccccccccceeCCC
Q 003465 694 FNNILL----NSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL----d~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE 736 (818)
|+|||+ +.++++||+|||+|+....... ......||++|+|||
T Consensus 136 p~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE 185 (317)
T cd07868 136 PANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPE 185 (317)
T ss_pred HHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCH
Confidence 899999 5678999999999997754321 234567999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.3e-09 Score=111.67 Aligned_cols=43 Identities=37% Similarity=0.413 Sum_probs=35.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC-----CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-----NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-----~~~~~~gt~gy~aPE 736 (818)
|+||++|+++.+||+|||+++....... ......||.+|+|||
T Consensus 135 p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE 182 (337)
T cd07852 135 PSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPE 182 (337)
T ss_pred HHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCce
Confidence 8999999999999999999987643321 223467899999999
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.7e-09 Score=108.67 Aligned_cols=109 Identities=21% Similarity=0.193 Sum_probs=63.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC--------Cc-chHHHHhc---------ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH--------PQ-EILSLFSS---------TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~--------~~-~~l~~~~~---------~~~~~~~ 755 (818)
++||++++++.+|++|||+++.............|+..|+|||.. .. ...+.|.. ...+...
T Consensus 141 p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~ 220 (275)
T cd06608 141 GQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCD 220 (275)
T ss_pred HHHEEEccCCeEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccc
Confidence 899999999999999999998764433333456699999999911 00 01122321 1111110
Q ss_pred c--cceecccCCCcC--ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 L--TYILDQRISPPK--KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~--~~~~d~~l~~~~--~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ...+........ ..........+.+++.+|++.+|++||++.+|++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~ 271 (275)
T cd06608 221 MHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLE 271 (275)
T ss_pred cchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 0 000000000000 0111223345667888999999999999999986
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-09 Score=120.78 Aligned_cols=43 Identities=21% Similarity=0.101 Sum_probs=34.8
Q ss_pred ccccccCC-CCcccccccccceeccCCC-CCccccccccceeCCC
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE 736 (818)
|+|||+|+ ++.+||+|||+|+.+.... .......||++|+|||
T Consensus 283 P~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE 327 (566)
T PLN03225 283 PQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPE 327 (566)
T ss_pred HHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChH
Confidence 89999996 5799999999998765432 2334568999999999
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-09 Score=113.57 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=68.4
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC---CCC---cchHHHHhcccC------CCcccccee
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP---QEILSLFSSTSD------PHITLTYIL 760 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~---~~~l~~~~~~~~------~~~~~~~~~ 760 (818)
..|||++ -.+..||+|||-+|.+..-...+.+..||..||||| +.| ....+.|+...- ......++-
T Consensus 703 GDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elg 782 (1226)
T KOG4279|consen 703 GDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELG 782 (1226)
T ss_pred CCcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecC
Confidence 5799996 578999999999998866555667789999999999 111 113344643221 001111111
Q ss_pred cc-------cCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 761 DQ-------RISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 761 d~-------~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.| .+-...++.+.+--...-..+++|-+++|.+||+++++++
T Consensus 783 spqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~ 831 (1226)
T KOG4279|consen 783 SPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQ 831 (1226)
T ss_pred ChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence 11 1100011224444445566788999999999999999874
|
|
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.4e-09 Score=109.15 Aligned_cols=110 Identities=16% Similarity=0.191 Sum_probs=64.7
Q ss_pred ccccccCCCC-----cccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHh---------c-ccCC
Q 003465 694 FNNILLNSEF-----EAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFS---------S-TSDP 752 (818)
Q Consensus 694 ~~NILLd~~~-----~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~---------~-~~~~ 752 (818)
|+||+++.+. .+|++|||+++....... ......++..|+|||. ......+.|+ . ...+
T Consensus 134 p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p 213 (269)
T cd05044 134 ARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQP 213 (269)
T ss_pred hheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCC
Confidence 8999999887 899999999986643211 1123346788999991 1111111221 1 1111
Q ss_pred --Cccccce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 753 --HITLTYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 753 --~~~~~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.....+. ++....... +......+.+++.+|++.+|++||+|.+|.+.|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 269 (269)
T cd05044 214 YPALNNQEVLQHVTAGGRLQK---PENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN 269 (269)
T ss_pred CcccCHHHHHHHHhcCCccCC---cccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence 1110111 111111111 22234556788889999999999999999999863
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-09 Score=108.49 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhc---------ccCCCccc---c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSS---------TSDPHITL---T 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~~~~~~~---~ 757 (818)
|+||++++++.+||+|||+++.............|+.+|+|||. .+....+.|.. ...+.... .
T Consensus 127 p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~ 206 (254)
T cd06627 127 AANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMA 206 (254)
T ss_pred HHHEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHH
Confidence 89999999999999999999987554433345678999999991 11111222221 11111000 0
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.. .......+......+..++..|++.+|++||++.+++.
T Consensus 207 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~ 250 (254)
T cd06627 207 ALFRIV-QDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLK 250 (254)
T ss_pred HHHHHh-ccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence 000000 00000011112345567788999999999999999874
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-09 Score=108.46 Aligned_cols=109 Identities=20% Similarity=0.244 Sum_probs=64.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---C-CcchHHHHh---------cccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---H-PQEILSLFS---------STSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~-~~~~l~~~~---------~~~~~--~~~~~~ 758 (818)
++||+++++..+||+|||++..............|+..|+|||. . .....+.|. ....+ .....+
T Consensus 131 ~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~ 210 (258)
T cd08215 131 PQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLE 210 (258)
T ss_pred hHHeEEcCCCcEEECCccceeecccCcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHH
Confidence 89999999999999999999876544323334578999999991 1 111122222 11111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+.+..........+......+.+++..|++.+|++||++.++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~ 254 (258)
T cd08215 211 LALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQ 254 (258)
T ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 11111111110111123345667888999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-09 Score=112.16 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=34.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++|+++.+|++|||+++...... ......|+.+|+|||
T Consensus 130 p~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~g~~~~~aPE 171 (285)
T cd05632 130 PENILLDDYGHIRISDLGLAVKIPEGE-SIRGRVGTVGYMAPE 171 (285)
T ss_pred HHHEEECCCCCEEEecCCcceecCCCC-cccCCCCCcCccChH
Confidence 889999999999999999998764332 223457999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-09 Score=109.29 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=62.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC----C---cc-hHHHHh---------cccCCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH----P---QE-ILSLFS---------STSDPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~----~---~~-~l~~~~---------~~~~~~~~~ 756 (818)
|+||++|+++.+||+|||+++...... ..+...|+..|+|||.- . .+ ..+.|. ....+....
T Consensus 132 p~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 210 (283)
T cd06617 132 PSNVLINRNGQVKLCDFGISGYLVDSV-AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSW 210 (283)
T ss_pred HHHEEECCCCCEEEeeccccccccccc-ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCcc
Confidence 889999999999999999998764322 22345689999999921 1 11 112222 111111100
Q ss_pred c---ceecccCCCcCccchH-HHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 T---YILDQRISPPKKQKIV-QDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~---~~~d~~l~~~~~~~~~-~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. +.+...+.......+. .....+.+++..|++.+|++||++.+|++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~ 260 (283)
T cd06617 211 KTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQ 260 (283)
T ss_pred ccCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0 0000101110000011 12245667888999999999999999985
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.5e-09 Score=109.40 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=63.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcc---------cCCCc------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPHI------ 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~~------ 754 (818)
++||++++++.+||+|||+++........ ...|+.+|+||| ..+....+.|... ..+..
T Consensus 129 ~~ni~~~~~~~~~l~d~g~~~~~~~~~~~--~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~ 206 (265)
T cd06605 129 PSNILVNSRGQIKLCDFGVSGQLVNSLAK--TFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPP 206 (265)
T ss_pred HHHEEECCCCCEEEeecccchhhHHHHhh--cccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccccc
Confidence 78999999999999999998766432211 267899999999 2121122333211 11111
Q ss_pred -cccceecccCCCcCccchHH-HHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 -TLTYILDQRISPPKKQKIVQ-DIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 -~~~~~~d~~l~~~~~~~~~~-~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.++..+.......+.. ....+.+++..|+..+|++||++.+++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 256 (265)
T cd06605 207 DGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLE 256 (265)
T ss_pred ccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence 01111111111111011111 3345677888999999999999999875
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.7e-09 Score=110.89 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=64.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC-------CcchHHHHhcc---------cCCCcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH-------PQEILSLFSST---------SDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~-------~~~~l~~~~~~---------~~~~~~-- 755 (818)
|+||+++.++.+||+|||+++.... .....|++.|+|||.. .....+.|... ..+...
T Consensus 153 p~Nil~~~~~~~kl~dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~ 228 (317)
T cd06635 153 AGNILLTEPGQVKLADFGSASIASP----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN 228 (317)
T ss_pred cccEEECCCCCEEEecCCCccccCC----cccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCcc
Confidence 8999999999999999999876532 2335688999999931 11123334321 111100
Q ss_pred cc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 756 LT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 756 ~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.. .+......... .......+.+++..|++.+|++||++.+|++.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~ 280 (317)
T cd06635 229 AMSALYHIAQNESPTLQ---SNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFV 280 (317)
T ss_pred HHHHHHHHHhccCCCCC---CccccHHHHHHHHHHccCCcccCcCHHHHHhChhh
Confidence 00 01111111111 11223446678889999999999999999976543
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-09 Score=105.66 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=42.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHh
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFS 747 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~ 747 (818)
|.|||||.++..||+|||+||.+... +-+.+||+-|+||| .+|+. .+++|+
T Consensus 172 PENiLlD~~G~iKitDFGFAK~v~~r---T~TlCGTPeYLAPEii~sk~ynkavDWWa 226 (355)
T KOG0616|consen 172 PENLLLDQNGHIKITDFGFAKRVSGR---TWTLCGTPEYLAPEIIQSKGYNKAVDWWA 226 (355)
T ss_pred hHHeeeccCCcEEEEeccceEEecCc---EEEecCCccccChHHhhcCCCCcchhHHH
Confidence 89999999999999999999987432 55789999999999 44544 556665
|
|
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-09 Score=110.00 Aligned_cols=103 Identities=13% Similarity=0.207 Sum_probs=61.4
Q ss_pred ccccccCCCCcc--------cccccccceeccCCCCCccccccccceeCCCC-----CCcchHHHHhccc----------
Q 003465 694 FNNILLNSEFEA--------FFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-----HPQEILSLFSSTS---------- 750 (818)
Q Consensus 694 ~~NILLd~~~~~--------ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-----~~~~~l~~~~~~~---------- 750 (818)
|+||+++.+.++ |++|||++..... .....|+++|+|||. ......+.|+...
T Consensus 128 p~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~ 203 (258)
T cd05078 128 AKNVLLIREEDRKTGNPPFIKLSDPGISITVLP----KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGD 203 (258)
T ss_pred cceEEEecccccccCCCceEEecccccccccCC----chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCC
Confidence 899999988775 8888888765422 234568899999992 1122233343111
Q ss_pred CCCcccc-----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 751 DPHITLT-----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 751 ~~~~~~~-----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
.+..... .+...+. .. +......+.+++..|++.+|++||+|++++++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~ 258 (258)
T cd05078 204 KPLSALDSQKKLQFYEDRH--QL---PAPKWTELANLINQCMDYEPDFRPSFRAIIRDLN 258 (258)
T ss_pred CChhhccHHHHHHHHHccc--cC---CCCCcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence 1100000 0001110 01 1112245678888999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-09 Score=114.01 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=35.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+++............+||++|+|||
T Consensus 124 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE 166 (327)
T cd05617 124 LDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPE 166 (327)
T ss_pred HHHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCCHH
Confidence 8999999999999999999986433333344577999999999
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-09 Score=112.52 Aligned_cols=43 Identities=30% Similarity=0.362 Sum_probs=34.7
Q ss_pred ccccccCC----CCcccccccccceeccCCCC---CccccccccceeCCC
Q 003465 694 FNNILLNS----EFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~----~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE 736 (818)
|+||+++. ++.+|++|||+++....... ......||+.|+|||
T Consensus 136 p~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE 185 (316)
T cd07842 136 PANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPE 185 (316)
T ss_pred HHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHH
Confidence 78999999 99999999999987643322 233567899999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.6e-09 Score=108.30 Aligned_cols=43 Identities=30% Similarity=0.325 Sum_probs=34.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE 736 (818)
|+||++++++++|++|||+++....... ..+...++..|+|||
T Consensus 128 p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE 171 (287)
T cd07840 128 GSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPE 171 (287)
T ss_pred HHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCce
Confidence 8999999999999999999987754321 234456788999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=108.01 Aligned_cols=41 Identities=34% Similarity=0.441 Sum_probs=33.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+|++|||+++..... ......|+.+|+|||
T Consensus 128 p~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~aPE 168 (308)
T cd06615 128 PSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPE 168 (308)
T ss_pred hHHEEEecCCcEEEccCCCccccccc--ccccCCCCcCccChh
Confidence 78999999999999999999865332 223457899999999
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.7e-09 Score=111.39 Aligned_cols=43 Identities=30% Similarity=0.378 Sum_probs=34.2
Q ss_pred cccccc----CCCCcccccccccceeccCCCC---CccccccccceeCCC
Q 003465 694 FNNILL----NSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL----d~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE 736 (818)
|+|||+ ++++++||+|||+++....... ......||.+|+|||
T Consensus 136 p~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE 185 (317)
T cd07867 136 PANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPE 185 (317)
T ss_pred HHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcH
Confidence 899999 6678999999999997754321 234567999999999
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.5e-09 Score=114.94 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=35.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+|+.+..... .....+||++|+|||
T Consensus 170 p~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE 213 (370)
T cd05621 170 PDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPE 213 (370)
T ss_pred HHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHH
Confidence 8999999999999999999997753322 224567999999999
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-09 Score=108.78 Aligned_cols=110 Identities=17% Similarity=0.305 Sum_probs=64.0
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCCC----C--CcchHHHHhc---------ccCC--Cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPAK----H--PQEILSLFSS---------TSDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE~----~--~~~~l~~~~~---------~~~~--~~ 754 (818)
++||++++++.+|++|||+++...... .......|+.+|+|||. . +....+.|+. ...+ ..
T Consensus 136 ~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~ 215 (272)
T cd06629 136 ADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDE 215 (272)
T ss_pred hhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCc
Confidence 799999999999999999998654321 12345678999999991 1 2112223321 1111 10
Q ss_pred c-ccceec---ccCCCcCc-cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 755 T-LTYILD---QRISPPKK-QKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 755 ~-~~~~~d---~~l~~~~~-~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
. ...+.+ ........ ....+....+.+++..|++.+|++||+|.+|++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 269 (272)
T cd06629 216 EAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQH 269 (272)
T ss_pred chHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence 0 000111 11111110 0011223456678889999999999999999863
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=110.88 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=34.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+|++|||+++...... ......||.+|+|||
T Consensus 146 p~Nil~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE 187 (353)
T cd07850 146 PSNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPE 187 (353)
T ss_pred HHHEEECCCCCEEEccCccceeCCCCC-CCCCCcccccccCHH
Confidence 899999999999999999998764332 233456889999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.6e-09 Score=109.35 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CC----cc-hHHHHhc---------ccCCCcc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HP----QE-ILSLFSS---------TSDPHIT- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~----~~-~l~~~~~---------~~~~~~~- 755 (818)
|+||++|+++.+||+|||+++.+..... .....|+.+|+|||. .. .+ ..+.|+. ...+...
T Consensus 143 p~nill~~~~~~kL~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~ 221 (296)
T cd06618 143 PSNILLDASGNVKLCDFGISGRLVDSKA-KTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNC 221 (296)
T ss_pred HHHEEEcCCCCEEECccccchhccCCCc-ccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcc
Confidence 7899999999999999999987643322 233468899999991 11 11 1222321 1111100
Q ss_pred ------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 ------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
...+++....... ........+.+++.+|++.+|++||++.++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~ 273 (296)
T cd06618 222 KTEFEVLTKILQEEPPSLP--PNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQH 273 (296)
T ss_pred hhHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 1111111111000 011123456778889999999999999999864
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.8e-09 Score=109.44 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=64.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCCcc-----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPHIT----- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~~~----- 755 (818)
|+||++++++.+||+|||+++...... ......||.+|+||| ..+.+ ..+.|+. ...+...
T Consensus 123 p~Nili~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~ 201 (277)
T cd05607 123 PENVLLDDQGNCRLSDLGLAVELKDGK-TITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKV 201 (277)
T ss_pred hHhEEEcCCCCEEEeeceeeeecCCCc-eeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchh
Confidence 899999999999999999998764332 223457999999999 11111 2223321 1111100
Q ss_pred -ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 756 -LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 756 -~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
..++....+..............+.+++..|++.+|++||++.|+++....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~~ 253 (277)
T cd05607 202 AKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRK 253 (277)
T ss_pred hHHHHHHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCCccchhhhhc
Confidence 011111111111000001123345678889999999999999877654443
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=107.73 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=34.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++++|++|||+++.............+|..|+|||
T Consensus 128 p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE 170 (284)
T cd07836 128 PQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPD 170 (284)
T ss_pred HHHEEECCCCcEEEeecchhhhhcCCccccccccccccccChH
Confidence 7899999999999999999987644333334456889999999
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=105.94 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=65.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------cc--CCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TS--DPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~--~~~~~~~~ 758 (818)
++||+++++..+|++|||+++..... ......|+.+|+||| +..+...+.|.. .. +......+
T Consensus 131 ~~ni~~~~~~~~kl~d~g~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~ 208 (256)
T cd08530 131 SANILLVANDLVKIGDLGISKVLKKN--MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQD 208 (256)
T ss_pred cceEEEecCCcEEEeeccchhhhccC--CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 78999999999999999999877544 223356889999999 111112222321 11 11111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+..........+.+......+..++..|++.+|++||++.++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 252 (256)
T cd08530 209 LRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILA 252 (256)
T ss_pred HHHHHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 11111111111112234456778888999999999999999875
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.7e-09 Score=114.44 Aligned_cols=43 Identities=30% Similarity=0.343 Sum_probs=35.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++.+||+|||+++.............|+..|+|||
T Consensus 136 p~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE 178 (337)
T cd07858 136 PSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPE 178 (337)
T ss_pred HHHEEEcCCCCEEECcCccccccCCCcccccccccccCccChH
Confidence 8999999999999999999987654323334456889999999
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-08 Score=107.64 Aligned_cols=107 Identities=22% Similarity=0.311 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CCcc-hHHHHh---------cccCCCccc----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HPQE-ILSLFS---------STSDPHITL---- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~~~-~l~~~~---------~~~~~~~~~---- 756 (818)
|+||+++.++++||+|||++..............|+.+|+|||. .+.+ ..+.|. ....+....
T Consensus 144 p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~ 223 (286)
T cd06614 144 SDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLR 223 (286)
T ss_pred hhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 89999999999999999998766443333334568899999991 1111 111221 111111100
Q ss_pred --cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 --TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 --~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+........ .........+.+++..|++.+|.+||++.+|++
T Consensus 224 ~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~ 269 (286)
T cd06614 224 ALFLITTKGIPPL--KNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQ 269 (286)
T ss_pred HHHHHHhcCCCCC--cchhhCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence 00111111110 011113345677888999999999999999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-08 Score=106.83 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=63.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCC----ccccccccceeCCC----C-CCcchHHHHh---------cccCCCc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN----RTLIAGTYRYIAPA----K-HPQEILSLFS---------STSDPHI- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~----~~~~~gt~gy~aPE----~-~~~~~l~~~~---------~~~~~~~- 754 (818)
++||++|+++.+|++|||+++.+...... .....|+.+|+||| . .....-+.|. ....+..
T Consensus 130 p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~ 209 (267)
T cd06610 130 AGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSK 209 (267)
T ss_pred HHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccc
Confidence 78999999999999999999877543222 23457999999999 1 1211112232 1111111
Q ss_pred -cccceecccCCCcCc--cch---HHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 -TLTYILDQRISPPKK--QKI---VQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 -~~~~~~d~~l~~~~~--~~~---~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.+...+..... ... ......+.++...|++.+|++||++.++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~ 263 (267)
T cd06610 210 YPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK 263 (267)
T ss_pred cChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 000111111110000 000 122345677888999999999999999875
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-09 Score=110.24 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=65.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC--C---CCcchHHHHhc---------ccCCCcc----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--K---HPQEILSLFSS---------TSDPHIT---- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~---~~~~~l~~~~~---------~~~~~~~---- 755 (818)
|+||++++++++||+|||.+..............||..|+||| + ..+...+.|+- ...+...
T Consensus 126 p~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~ 205 (260)
T PF00069_consen 126 PENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSD 205 (260)
T ss_dssp GGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 8999999999999999999987533333445678999999999 2 11112333321 1111110
Q ss_pred -ccceecccCCCcCc---cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 -LTYILDQRISPPKK---QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 -~~~~~d~~l~~~~~---~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+.+......... .........+.++...|++.+|++||+|.++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~ 256 (260)
T PF00069_consen 206 DQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELLK 256 (260)
T ss_dssp HHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred hhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 01111111100000 000011256778888999999999999999975
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=106.11 Aligned_cols=106 Identities=17% Similarity=0.107 Sum_probs=62.8
Q ss_pred ccccccCCCC-------cccccccccceeccCCCCCccccccccceeCCCC---C---CcchHHHHhcc----------c
Q 003465 694 FNNILLNSEF-------EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---H---PQEILSLFSST----------S 750 (818)
Q Consensus 694 ~~NILLd~~~-------~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~---~~~~l~~~~~~----------~ 750 (818)
|+||+++.++ .+|++|||+++.... .....|+..|+|||. . +....+.|+.. .
T Consensus 129 p~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~ 204 (259)
T cd05037 129 GKNILVARYGLNEGYVPFIKLSDPGIPITVLS----REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGE 204 (259)
T ss_pred cceEEEecCccccCCceeEEeCCCCccccccc----ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCC
Confidence 8999999988 799999999987543 223457778999992 1 11122233211 1
Q ss_pred CCCccc--cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 751 DPHITL--TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 751 ~~~~~~--~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
.+.... .+.......... .+......+.+++..|++.+|.+||+|.+|++.|+
T Consensus 205 ~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~ 259 (259)
T cd05037 205 EPLSTLSSSEKERFYQDQHR--LPMPDCAELANLINQCWTYDPTKRPSFRAILRDLN 259 (259)
T ss_pred CCcccCCchhHHHHHhcCCC--CCCCCchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence 111000 000000000000 01111256778888999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.4e-09 Score=108.42 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=34.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
++||++|+++++|++|||+++....... .....|+..|+|||
T Consensus 135 ~~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~PE 176 (287)
T cd07838 135 PQNILVTSDGQVKIADFGLARIYSFEMA-LTSVVVTLWYRAPE 176 (287)
T ss_pred hhhEEEccCCCEEEeccCcceeccCCcc-cccccccccccChH
Confidence 8999999999999999999988744322 23345889999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-08 Score=106.14 Aligned_cols=108 Identities=27% Similarity=0.349 Sum_probs=61.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCC----ccccccccceeCCC----CC---CcchHHHHhc---------ccCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN----RTLIAGTYRYIAPA----KH---PQEILSLFSS---------TSDPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~----~~~~~gt~gy~aPE----~~---~~~~l~~~~~---------~~~~~ 753 (818)
++||++++++.+||+|||+++........ .....|+..|+||| .. +....+.|.. ...+.
T Consensus 127 ~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf 206 (264)
T cd06626 127 PANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPW 206 (264)
T ss_pred HHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCc
Confidence 78999999999999999999877543221 12357889999999 11 1111222221 11111
Q ss_pred ccc---ccee---cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 ITL---TYIL---DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 ~~~---~~~~---d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... ..+. ........ +........+.+++..|++.+|++||++.+++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~ 260 (264)
T cd06626 207 SELDNEFQIMFHVGAGHKPPI-PDSLQLSPEGKDFLDRCLESDPKKRPTASELLQ 260 (264)
T ss_pred cCCcchHHHHHHHhcCCCCCC-CcccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 000 0000 00000001 011112344567778999999999999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-08 Score=106.00 Aligned_cols=43 Identities=33% Similarity=0.343 Sum_probs=35.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||.+..............++..|+|||
T Consensus 126 p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE 168 (283)
T cd05118 126 PENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPE 168 (283)
T ss_pred HHHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcH
Confidence 8999999999999999999987755432233456888999999
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-08 Score=106.97 Aligned_cols=108 Identities=20% Similarity=0.219 Sum_probs=63.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC----C------cchHHHHh---------cccCCC-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH----P------QEILSLFS---------STSDPH- 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~----~------~~~l~~~~---------~~~~~~- 753 (818)
|+||+++.++.+|++|||+++.+... ......|+.+|+|||.. + +...+.|+ ....+.
T Consensus 131 p~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~ 208 (286)
T cd06622 131 PTNVLVNGNGQVKLCDFGVSGNLVAS--LAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYP 208 (286)
T ss_pred HHHEEECCCCCEEEeecCCcccccCC--ccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCC
Confidence 78999999999999999999866332 22345688999999921 1 11122232 111111
Q ss_pred -ccccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 754 -ITLTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 754 -~~~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.......+ ..........+.+....+..++..|++.+|++||++.+++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~ 262 (286)
T cd06622 209 PETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEH 262 (286)
T ss_pred CcchhhHHHHHHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhcC
Confidence 11111110 011111101122334556678889999999999999999863
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.5e-09 Score=113.70 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.5
Q ss_pred ccccccCCCCcccccccccceec
Q 003465 694 FNNILLNSEFEAFFGNFGVARLL 716 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~ 716 (818)
|+|||+|+++++||+|||+++.+
T Consensus 129 p~NILi~~~~~vkL~DFGla~~~ 151 (363)
T cd05628 129 PDNLLLDSKGHVKLSDFGLCTGL 151 (363)
T ss_pred HHHeEECCCCCEEEeeccCcccc
Confidence 89999999999999999999865
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-08 Score=105.82 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=34.2
Q ss_pred ccccccCCCCcccccccccceeccCC---CCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD---SSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~---~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++.+... ........|+.+|+|||
T Consensus 134 p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE 179 (265)
T cd06652 134 GANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPE 179 (265)
T ss_pred HHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChh
Confidence 89999999999999999999866422 11233456999999999
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.1e-09 Score=110.83 Aligned_cols=108 Identities=21% Similarity=0.224 Sum_probs=68.8
Q ss_pred ccccccCCC----CcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhccc---------CCC--c
Q 003465 694 FNNILLNSE----FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSSTS---------DPH--I 754 (818)
Q Consensus 694 ~~NILLd~~----~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~~---------~~~--~ 754 (818)
|+|+|+... +..|++|||+|+.... ......++||++|+||| ..++. ..+.|..+. .+. .
T Consensus 163 pEN~L~~~~~~~~~~ik~~DFGla~~~~~-~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~ 241 (382)
T KOG0032|consen 163 PENLLLASKDEGSGRIKLIDFGLAKFIKP-GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGE 241 (382)
T ss_pred HHHeeeccccCCCCcEEEeeCCCceEccC-CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCC
Confidence 899999655 4699999999998876 44567889999999999 23433 444554221 111 1
Q ss_pred ----cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 755 ----TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 755 ----~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
....+......... +.+...-..+-.....++..||..|++..++++.
T Consensus 242 ~~~~~~~~i~~~~~~f~~-~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~H 293 (382)
T KOG0032|consen 242 TEFEIFLAILRGDFDFTS-EPWDDISESAKDFIRKLLEFDPRKRLTAAQALQH 293 (382)
T ss_pred ChhHHHHHHHcCCCCCCC-CCccccCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence 11122223222111 1122223344456669999999999999999884
|
|
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-08 Score=103.38 Aligned_cols=108 Identities=22% Similarity=0.211 Sum_probs=65.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhcc---------cCC--C-cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSST---------SDP--H-ITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~~---------~~~--~-~~~~ 757 (818)
++||+++++++++++|||.+....... ......|+..|++||. ..+...+.|... ..+ . ....
T Consensus 115 ~~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~ 193 (244)
T smart00220 115 PENILLDEDGHVKLADFGLARQLDPGG-LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLL 193 (244)
T ss_pred HHHeEECCCCcEEEccccceeeecccc-ccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHH
Confidence 789999999999999999998775432 2344568899999991 121222223211 111 1 1111
Q ss_pred ceecccCCCcCccchHH--HHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQKIVQ--DIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~--~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+.+............. ....+.+++.+|++.+|++||++.++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~ 240 (244)
T smart00220 194 ELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ 240 (244)
T ss_pred HHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence 11111111111000000 3456778899999999999999999986
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-08 Score=109.87 Aligned_cols=43 Identities=37% Similarity=0.475 Sum_probs=34.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++....... ..+...|+..|+|||
T Consensus 135 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE 181 (334)
T cd07855 135 PSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPE 181 (334)
T ss_pred HHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChH
Confidence 8999999999999999999987643221 123457899999999
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-08 Score=105.40 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=34.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
++||++|+++.+|++|||+++....... .+...|+..|+|||
T Consensus 127 ~~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~aPE 168 (283)
T cd07830 127 PENLLVSGPEVVKIADFGLAREIRSRPP-YTDYVSTRWYRAPE 168 (283)
T ss_pred hhhEEEcCCCCEEEeecccceeccCCCC-cCCCCCcccccCce
Confidence 8999999999999999999987643322 23346889999999
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-08 Score=108.31 Aligned_cols=110 Identities=19% Similarity=0.229 Sum_probs=64.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC-------CCcchHHHHhcc---------cCCCccc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-------HPQEILSLFSST---------SDPHITL- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-------~~~~~l~~~~~~---------~~~~~~~- 756 (818)
|+||+++.++.+|++|||+++..... ....|+..|+|||. ......+.|+.. ..+....
T Consensus 143 p~nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~ 218 (308)
T cd06634 143 AGNILLSEPGLVKLGDFGSASIMAPA----NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN 218 (308)
T ss_pred HHhEEECCCCcEEECCcccceeecCc----ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc
Confidence 89999999999999999999876432 34568899999992 111122333211 1111000
Q ss_pred -cceecccCCCcC-ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 -TYILDQRISPPK-KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 -~~~~d~~l~~~~-~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+.......... ..........+.+++.+|++.+|++||++.+|++.-.-.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~ 271 (308)
T cd06634 219 AMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVL 271 (308)
T ss_pred HHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhhCcccc
Confidence 000000000000 000112234456778899999999999999998764433
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-08 Score=106.44 Aligned_cols=112 Identities=18% Similarity=0.130 Sum_probs=64.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC--------CccccccccceeCCCC----CCcchHHHHhc---------ccCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--------NRTLIAGTYRYIAPAK----HPQEILSLFSS---------TSDP 752 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--------~~~~~~gt~gy~aPE~----~~~~~l~~~~~---------~~~~ 752 (818)
++||++|++..+|++|||+++....... ......++..|+|||. ......+.|.. ...+
T Consensus 121 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p 200 (265)
T cd05579 121 PDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPP 200 (265)
T ss_pred HHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCC
Confidence 8999999999999999999886543311 2345668899999991 11111122221 1111
Q ss_pred --CccccceecccCCCcCccchHHH--HHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 753 --HITLTYILDQRISPPKKQKIVQD--IALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 753 --~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.....+..+....+.. ..+..+ ...+..+...|++.+|++||++.+|.+.|+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~ 257 (265)
T cd05579 201 FHGETPEEIFQNILNGKI-EWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKNH 257 (265)
T ss_pred CCCCCHHHHHHHHhcCCc-CCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhcC
Confidence 1111111111111110 001111 3456678889999999999999777776654
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-08 Score=107.86 Aligned_cols=43 Identities=35% Similarity=0.381 Sum_probs=35.2
Q ss_pred ccccccCCCCcccccccccceeccCCC---CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS---SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~---~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+|++|||+++...... .......||..|+|||
T Consensus 131 p~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE 176 (330)
T cd07834 131 PSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPE 176 (330)
T ss_pred HHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCce
Confidence 899999999999999999999875443 1234456888999999
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-08 Score=105.53 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=66.3
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCCCC----CcchHHHHhc----------ccCCCcc--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPAKH----PQEILSLFSS----------TSDPHIT--L 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE~~----~~~~l~~~~~----------~~~~~~~--~ 756 (818)
|+||++++++.+|++|||+++...... .......++..|+|||.. +....+.|+. ...+... .
T Consensus 145 p~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~ 224 (275)
T cd05046 145 ARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSD 224 (275)
T ss_pred cceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccch
Confidence 899999999999999999988653322 122344678889999921 1111222321 1111100 0
Q ss_pred cceec----ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 757 TYILD----QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 757 ~~~~d----~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
.+++. ..+.... .......+.+++.+|++.+|++||++.|++++|.+
T Consensus 225 ~~~~~~~~~~~~~~~~---~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~~ 275 (275)
T cd05046 225 EEVLNRLQAGKLELPV---PEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALGE 275 (275)
T ss_pred HHHHHHHHcCCcCCCC---CCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhcC
Confidence 01111 1111111 11233467788889999999999999999998863
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-08 Score=107.10 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=34.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++....... ......|+..|+|||
T Consensus 147 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE 193 (310)
T cd07865 147 AANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPE 193 (310)
T ss_pred HHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcH
Confidence 7999999999999999999987643221 123456788999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.2e-09 Score=106.76 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=46.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~ 749 (818)
..||+||.++++||+|||+.|.---+...+.+.+||+.||||| +.|+. .+++|+..
T Consensus 478 LDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~G 537 (683)
T KOG0696|consen 478 LDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFG 537 (683)
T ss_pred ccceEeccCCceEeeecccccccccCCcceeeecCCCcccccceEEecccccchhHHHHH
Confidence 5799999999999999999996555555667899999999999 77777 66677643
|
|
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-08 Score=104.22 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=32.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+++....... ......++..|+|||
T Consensus 128 p~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE 172 (269)
T cd05042 128 LRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPE 172 (269)
T ss_pred HhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHH
Confidence 8999999999999999999976433211 123345678899999
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-08 Score=112.54 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.0
Q ss_pred ccccccCCCCcccccccccceec
Q 003465 694 FNNILLNSEFEAFFGNFGVARLL 716 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~ 716 (818)
|+|||+|.++++||+|||+++.+
T Consensus 129 p~Nili~~~~~~kL~DFGl~~~~ 151 (381)
T cd05626 129 PDNILIDLDGHIKLTDFGLCTGF 151 (381)
T ss_pred HHHEEECCCCCEEEeeCcCCccc
Confidence 89999999999999999998644
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-08 Score=106.91 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=60.1
Q ss_pred ccccccCCCC-------cccccccccceeccCCCCCccccccccceeCCCCC-----CcchHHHHhcc----------cC
Q 003465 694 FNNILLNSEF-------EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH-----PQEILSLFSST----------SD 751 (818)
Q Consensus 694 ~~NILLd~~~-------~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~-----~~~~l~~~~~~----------~~ 751 (818)
|+|||++.++ .+|++|||+++..... ....|+..|+|||.- .....+.|+.. ..
T Consensus 145 p~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~----~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~ 220 (274)
T cd05076 145 AKNILLARLGLAEGTSPFIKLSDPGVSFTALSR----EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEV 220 (274)
T ss_pred cccEEEeccCcccCccceeeecCCccccccccc----cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 8999998654 3799999998654221 223578899999911 11122333211 11
Q ss_pred CC--cc---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 752 PH--IT---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 752 ~~--~~---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
+. .. ...+.+..... +......+.+++..|++.+|++||+|.+|++.|.
T Consensus 221 p~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~L~ 274 (274)
T cd05076 221 PLKERTPSEKERFYEKKHRL-----PEPSCKELATLISQCLTYEPTQRPSFRTILRDLT 274 (274)
T ss_pred CccccChHHHHHHHHhccCC-----CCCCChHHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence 10 00 00111111110 1111235678888999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.6e-09 Score=109.49 Aligned_cols=113 Identities=18% Similarity=0.062 Sum_probs=63.8
Q ss_pred ccccccCCCCcccccccccceeccCCC---------------CCccccccccceeCCCC----CCcchHHHHhc------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS---------------SNRTLIAGTYRYIAPAK----HPQEILSLFSS------ 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~---------------~~~~~~~gt~gy~aPE~----~~~~~l~~~~~------ 748 (818)
|+||++++++++|++|||+++...... .......|+.+|+|||. ......+.|..
T Consensus 129 p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~e 208 (305)
T cd05609 129 PDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYE 208 (305)
T ss_pred hHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHH
Confidence 899999999999999999998521110 01123568899999992 11122223321
Q ss_pred ---ccCC--CccccceecccCCCc--CccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 749 ---TSDP--HITLTYILDQRISPP--KKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 749 ---~~~~--~~~~~~~~d~~l~~~--~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
...+ .....++........ ...........+.+++..|++.+|++||++.++.+.|+.
T Consensus 209 l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~ 273 (305)
T cd05609 209 FLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH 273 (305)
T ss_pred HHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence 1111 111111111111110 000011123446778889999999999998777766665
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8e-09 Score=119.93 Aligned_cols=43 Identities=30% Similarity=0.430 Sum_probs=35.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCC----ccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN----RTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~----~~~~~gt~gy~aPE 736 (818)
+.||+||.++..|.+|||-|+-+...... ....+||+-|||||
T Consensus 1362 ~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPE 1408 (1509)
T KOG4645|consen 1362 PANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPE 1408 (1509)
T ss_pred ccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCch
Confidence 89999999999999999999887544211 24578999999999
|
|
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-08 Score=107.80 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=34.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++|+++.+|++|||+++....... .....||.+|+|||
T Consensus 130 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~g~~~y~aPE 171 (285)
T cd05630 130 PENILLDDHGHIRISDLGLAVHVPEGQT-IKGRVGTVGYMAPE 171 (285)
T ss_pred HHHEEECCCCCEEEeeccceeecCCCcc-ccCCCCCccccChH
Confidence 8999999999999999999987643322 23357999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-08 Score=104.90 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=35.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE 736 (818)
++||++++++.+|++|||+++....... ......|+.+|+|||
T Consensus 127 p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE 170 (286)
T cd07832 127 PANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPE 170 (286)
T ss_pred HHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCce
Confidence 7899999999999999999987754321 233457899999999
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.3e-08 Score=104.30 Aligned_cols=106 Identities=21% Similarity=0.196 Sum_probs=62.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCCCccc----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDPHITL---- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~~~~~---- 756 (818)
++||++|++..+|++|||+++...... .....++..|+||| ...+...+.|.. ...+....
T Consensus 133 ~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 210 (287)
T cd06621 133 PSNILLTRKGQVKLCDFGVSGELVNSL--AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPP 210 (287)
T ss_pred HHHEEEecCCeEEEeeccccccccccc--cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCC
Confidence 789999999999999999987654322 22456888999999 111112222321 11111000
Q ss_pred ---cceec-------ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 ---TYILD-------QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ---~~~~d-------~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+..+ +.+.... .........+.+++..|++.+|.+||+|.||++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~ 265 (287)
T cd06621 211 LGPIELLSYIVNMPNPELKDEP-GNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE 265 (287)
T ss_pred CChHHHHHHHhcCCchhhccCC-CCCCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence 01111 0111000 000112345678888999999999999999987
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-08 Score=104.44 Aligned_cols=43 Identities=30% Similarity=0.308 Sum_probs=34.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
++||++++++.+||+|||+++.............++..|+|||
T Consensus 126 ~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE 168 (282)
T cd07829 126 PQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPE 168 (282)
T ss_pred hheEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCChH
Confidence 8999999999999999999987754433333445678899999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-08 Score=103.05 Aligned_cols=43 Identities=19% Similarity=0.388 Sum_probs=33.3
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+|++|||+++...... .......|+..|+|||
T Consensus 127 p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE 171 (268)
T cd05086 127 LRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPE 171 (268)
T ss_pred cceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCch
Confidence 899999999999999999987532221 1223456889999999
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-09 Score=111.66 Aligned_cols=34 Identities=15% Similarity=-0.001 Sum_probs=26.1
Q ss_pred Hhhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc
Q 003465 647 TEDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR 680 (818)
Q Consensus 647 t~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~ 680 (818)
.++|..-..|| |+||.|.- .+|..+|.|++++..
T Consensus 140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~ 178 (550)
T KOG0605|consen 140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSE 178 (550)
T ss_pred cccchhheeeccccceeEEEEEEccCCcEEeeecccHHH
Confidence 35676667787 99999996 459999999776543
|
|
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.3e-09 Score=109.86 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=34.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC-----------CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-----------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-----------~~~~~~gt~gy~aPE 736 (818)
++||++++++++|++|||+++....... ..+.+.|+..|+|||
T Consensus 143 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE 196 (311)
T cd07866 143 AANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPE 196 (311)
T ss_pred HHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChH
Confidence 8999999999999999999987643211 123456889999999
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-08 Score=108.12 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=32.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++|+++.+|++|||+++..... .....|+..|+|||
T Consensus 136 p~Nili~~~~~~~l~dfg~~~~~~~~---~~~~~~~~~y~aPE 175 (328)
T cd07856 136 PSNILINENCDLKICDFGLARIQDPQ---MTGYVSTRYYRAPE 175 (328)
T ss_pred HHHEeECCCCCEEeCccccccccCCC---cCCCcccccccCce
Confidence 89999999999999999999864322 22346788999999
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.8e-10 Score=104.98 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=65.5
Q ss_pred ccccccCCC---CcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCCC--cc
Q 003465 694 FNNILLNSE---FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~---~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~~--~~ 755 (818)
|.|+||.+. --+|++|||+|+.+. +...+.+.+||++||||| +.|+. ..+.|+.. ..+. ..
T Consensus 138 P~nllLASK~~~A~vKL~~FGvAi~l~-~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~ 216 (355)
T KOG0033|consen 138 PENLLLASKAKGAAVKLADFGLAIEVN-DGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED 216 (355)
T ss_pred hhheeeeeccCCCceeecccceEEEeC-CccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCcc
Confidence 899999543 347999999999987 666778889999999999 55544 34455422 1111 11
Q ss_pred ccceecccCCCcCc---cchHHHHHHHHHHHHhccCCCCCCCCChHHHH
Q 003465 756 LTYILDQRISPPKK---QKIVQDIALASIVALACLQSKPKSVPTMQRVS 801 (818)
Q Consensus 756 ~~~~~d~~l~~~~~---~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~ 801 (818)
..++....+.+... +.+..--...-.+..+.+..||.+|-|..|.+
T Consensus 217 ~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL 265 (355)
T KOG0033|consen 217 QHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEAL 265 (355)
T ss_pred HHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHh
Confidence 22222222222110 01111122333455588899999999988755
|
|
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-08 Score=108.33 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=62.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC-----------------------------CccccccccceeCCC----CCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-----------------------------NRTLIAGTYRYIAPA----KHPQ 740 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-----------------------------~~~~~~gt~gy~aPE----~~~~ 740 (818)
++||+++.++.+|++|||+++....... ......||..|+||| ...+
T Consensus 131 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~ 210 (316)
T cd05574 131 PENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHG 210 (316)
T ss_pred hHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCC
Confidence 8899999999999999999876532211 012346899999999 1112
Q ss_pred chHHHHhc---------ccCCC--c----cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 741 EILSLFSS---------TSDPH--I----TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 741 ~~l~~~~~---------~~~~~--~----~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
...+.|.. ...+. . ...++.+....... .......+.++...|++.+|++||++...++++.
T Consensus 211 ~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll 287 (316)
T cd05574 211 SAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPG---SPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIK 287 (316)
T ss_pred chHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHhcCCccCCC---ccccCHHHHHHHHHHccCCHhHCCCchhhHHHHH
Confidence 12223321 11111 0 01112222221111 1113455677788999999999999544444444
Q ss_pred c
Q 003465 806 K 806 (818)
Q Consensus 806 ~ 806 (818)
.
T Consensus 288 ~ 288 (316)
T cd05574 288 Q 288 (316)
T ss_pred c
Confidence 3
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.4e-08 Score=101.32 Aligned_cols=106 Identities=24% Similarity=0.254 Sum_probs=64.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC----CCcchHHHHh---------cccCCCccc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK----HPQEILSLFS---------STSDPHITL-- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~----~~~~~l~~~~---------~~~~~~~~~-- 756 (818)
|+||++++++.+||+|||.++....... ......++..|+|||. .+....+.|. ....+....
T Consensus 129 p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~ 208 (260)
T cd06606 129 GANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGN 208 (260)
T ss_pred HHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence 8899999999999999999988755432 1345678999999992 1211222222 111111000
Q ss_pred -----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 -----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 -----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+........ .+......+.+++.+|++.+|.+||++.++++
T Consensus 209 ~~~~~~~~~~~~~~~~---~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~ 256 (260)
T cd06606 209 PMAALYKIGSSGEPPE---IPEHLSEEAKDFLRKCLRRDPKKRPTADELLQ 256 (260)
T ss_pred hHHHHHhccccCCCcC---CCcccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence 01111011111 12222456677888999999999999999986
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.3e-09 Score=108.41 Aligned_cols=54 Identities=31% Similarity=0.484 Sum_probs=40.3
Q ss_pred ccccccCCC---CcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc
Q 003465 694 FNNILLNSE---FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS 748 (818)
Q Consensus 694 ~~NILLd~~---~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~ 748 (818)
|.||||.+. -.+|++|||+||++.+. +-...++||+.|+||| .+.+. .++.|..
T Consensus 692 PENVLLas~~~FPQvKlCDFGfARiIgEk-sFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSV 752 (888)
T KOG4236|consen 692 PENVLLASASPFPQVKLCDFGFARIIGEK-SFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSV 752 (888)
T ss_pred chheeeccCCCCCceeeccccceeecchh-hhhhhhcCCccccCHHHHhhccccccccceee
Confidence 899999643 36899999999998543 3445689999999999 22222 6777864
|
|
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-08 Score=113.05 Aligned_cols=109 Identities=24% Similarity=0.294 Sum_probs=68.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC-----CCCcc----hHHHHhcccC----CCc--cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA-----KHPQE----ILSLFSSTSD----PHI--TLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE-----~~~~~----~l~~~~~~~~----~~~--~~~~ 758 (818)
-.||||..++++|+.|||+++.++..-.-..+..||+.||||| ..+.. ..+.|+-... .++ .+.+
T Consensus 151 G~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~D 230 (953)
T KOG0587|consen 151 GQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCD 230 (953)
T ss_pred CceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccC
Confidence 5799999999999999999998865544455678999999999 11111 3344542211 000 0111
Q ss_pred e-------ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 I-------LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~-------~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+ .-++-.++....+..-.+++.+.+..|+..|-++||+|.+.++
T Consensus 231 mHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~ 281 (953)
T KOG0587|consen 231 MHPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK 281 (953)
T ss_pred cchhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence 1 0111111111224445566777778999999999999988764
|
|
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-08 Score=111.77 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=22.0
Q ss_pred ccccccCCCCcccccccccceecc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLN 717 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~ 717 (818)
|+|||+|.++.+||+|||+++.+.
T Consensus 129 p~NIl~~~~~~~kl~Dfg~~~~~~ 152 (364)
T cd05599 129 PDNLLLDAKGHIKLSDFGLCTGLK 152 (364)
T ss_pred HHHeEECCCCCEEEeecccceecc
Confidence 899999999999999999998653
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-08 Score=106.43 Aligned_cols=43 Identities=30% Similarity=0.386 Sum_probs=34.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++.+..... ......||..|+|||
T Consensus 133 p~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE 179 (332)
T cd07857 133 PGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPE 179 (332)
T ss_pred HHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcH
Confidence 8999999999999999999987643211 123457899999999
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-08 Score=110.57 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=35.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.+..... .....+||++|+|||
T Consensus 213 p~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE 257 (392)
T PHA03207 213 TENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPE 257 (392)
T ss_pred HHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHh
Confidence 8999999999999999999987654322 234567999999999
|
|
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-08 Score=90.33 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=42.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC-----CCCcchHHHHhcccC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA-----KHPQEILSLFSSTSD 751 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE-----~~~~~~l~~~~~~~~ 751 (818)
|+|.|++.+++.|++|||+||.+...-...+.-+-|..|-+|. +-....+..|+....
T Consensus 129 pqnllin~ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagci 191 (292)
T KOG0662|consen 129 PQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCI 191 (292)
T ss_pred cceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchH
Confidence 8999999999999999999998864432233445688898887 222336778876543
|
|
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-08 Score=108.08 Aligned_cols=96 Identities=26% Similarity=0.180 Sum_probs=68.3
Q ss_pred cchHHHHHHHhhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc--cchhhhhHhhh-------------------
Q 003465 638 IAFEEIIRATEDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR--SAFFKSFQNEA------------------- 691 (818)
Q Consensus 638 ~~~~~l~~at~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~--~~~~~~f~~E~------------------- 691 (818)
...+++..++++|.....+| |.||+|.. .+|+.||||+..... ....+.+.+|+
T Consensus 7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~ 86 (345)
T cd07877 7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFT 86 (345)
T ss_pred hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeee
Confidence 44556667778887777777 88999984 578999999664321 11122333443
Q ss_pred --------------------------------------------------------cc---ccccccCCCCccccccccc
Q 003465 692 --------------------------------------------------------HV---FNNILLNSEFEAFFGNFGV 712 (818)
Q Consensus 692 --------------------------------------------------------h~---~~NILLd~~~~~ki~DFGl 712 (818)
|+ ++||++++++.+|++|||+
T Consensus 87 ~~~~~~~~~~~~lv~~~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~ 166 (345)
T cd07877 87 PARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGL 166 (345)
T ss_pred ecccccccccEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecccc
Confidence 22 8999999999999999999
Q ss_pred ceeccCCCCCccccccccceeCCC
Q 003465 713 ARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 713 a~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
++..... .....||..|+|||
T Consensus 167 ~~~~~~~---~~~~~~~~~y~aPE 187 (345)
T cd07877 167 ARHTDDE---MTGYVATRWYRAPE 187 (345)
T ss_pred ccccccc---ccccccCCCccCHH
Confidence 9865322 23456889999999
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.9e-09 Score=105.02 Aligned_cols=113 Identities=10% Similarity=0.095 Sum_probs=70.3
Q ss_pred ccccccCCCCcccccccccceeccC-CCCCc-cccccccceeCCC-------CCCcc----hHHHHhcccCCCcccccee
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNS-DSSNR-TLIAGTYRYIAPA-------KHPQE----ILSLFSSTSDPHITLTYIL 760 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~-~~~~~-~~~~gt~gy~aPE-------~~~~~----~l~~~~~~~~~~~~~~~~~ 760 (818)
++|.++|+...+|++|=.|+|.+-. +.+.- -.---...||+|| ..+.| .+..|.-.........+ +
T Consensus 424 aRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~Pyae-I 502 (563)
T KOG1024|consen 424 ARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAE-I 502 (563)
T ss_pred hhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccc-c
Confidence 7899999999999999999997633 22110 1111235899999 11222 22223211111110111 1
Q ss_pred ccc------CCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 761 DQR------ISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 761 d~~------l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
||- ..+.....+..|+.+++.|+..||+..|++||+++|++..|.+.
T Consensus 503 DPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF 555 (563)
T KOG1024|consen 503 DPFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVICLSEF 555 (563)
T ss_pred CHHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 211 11222233557888899999999999999999999999999865
|
|
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-08 Score=104.41 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=32.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++|. +.+||+|||+++.+..... .+...|+..|+|||
T Consensus 128 p~ni~l~~-~~~kl~dfg~~~~~~~~~~-~~~~~~~~~y~aPE 168 (282)
T cd07831 128 PENILIKD-DILKLADFGSCRGIYSKPP-YTEYISTRWYRAPE 168 (282)
T ss_pred HHHEEEcC-CCeEEEecccccccccCCC-cCCCCCCcccCChh
Confidence 89999999 9999999999987643322 23346889999999
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-08 Score=106.44 Aligned_cols=43 Identities=30% Similarity=0.291 Sum_probs=33.1
Q ss_pred ccccccCCCCcccccccccceeccCC--------------CCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD--------------SSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~--------------~~~~~~~~gt~gy~aPE 736 (818)
++||+++.++.+|++|||+++..... ....+...++.+|+|||
T Consensus 147 ~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE 203 (335)
T PTZ00024 147 PANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPE 203 (335)
T ss_pred HHHeEECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCCh
Confidence 78999999999999999999876511 11122345788999999
|
|
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.8e-08 Score=109.58 Aligned_cols=112 Identities=20% Similarity=0.190 Sum_probs=76.0
Q ss_pred ccccccCCCCcccccccccceeccCC--CCCc-------cccccccceeCCC------CCCcc-hHHHHhc---------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD--SSNR-------TLIAGTYRYIAPA------KHPQE-ILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~--~~~~-------~~~~gt~gy~aPE------~~~~~-~l~~~~~--------- 748 (818)
.+||||++++.-|+||||=|--.-.. .... -..--|+-|-||| ..|.+ ..+.|+-
T Consensus 174 iENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy 253 (738)
T KOG1989|consen 174 IENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCY 253 (738)
T ss_pred hhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999987432111 1100 1122467899999 34444 4555653
Q ss_pred --ccCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 749 --TSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 749 --~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+++.....|++.....+. ....-..+..|+..|++++|.+||++-+|++.+-++.
T Consensus 254 ~t~PFe~sg~laIlng~Y~~P~---~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~ 312 (738)
T KOG1989|consen 254 FTTPFEESGKLAILNGNYSFPP---FPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELA 312 (738)
T ss_pred hCCCcCcCcceeEEeccccCCC---CccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHh
Confidence 23333335667777765544 2344555667777999999999999999999998883
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-08 Score=78.19 Aligned_cols=59 Identities=41% Similarity=0.525 Sum_probs=32.6
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCC
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN 160 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 160 (818)
+|++|++++|.+....+..|.++++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555554444555555555555555554
|
... |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-08 Score=102.23 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=61.8
Q ss_pred ccccccCCCC-cccccccccceeccCCCC----CccccccccceeCCC----CCCcchHHHHhc---------ccCCC--
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDPH-- 753 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~~-- 753 (818)
++||+++.+. .+|++|||+++....... ......||.+|+||| ..+....+.|.. ...+.
T Consensus 131 ~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~ 210 (268)
T cd06630 131 GANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNA 210 (268)
T ss_pred HHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCC
Confidence 7899998876 599999999987653311 123457899999999 111111122221 11111
Q ss_pred cccc---ceeccc-CCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 ITLT---YILDQR-ISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 ~~~~---~~~d~~-l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.... ..+... ........+......+.+++..|++.+|++||++.++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~ 263 (268)
T cd06630 211 EKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK 263 (268)
T ss_pred CCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence 0000 000000 000000112223355677888999999999999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-08 Score=109.21 Aligned_cols=43 Identities=26% Similarity=0.401 Sum_probs=35.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE 736 (818)
|+|||+++++++||+|||+++.+..... .....+||++|+|||
T Consensus 170 p~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE 213 (371)
T cd05622 170 PDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPE 213 (371)
T ss_pred HHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHH
Confidence 8999999999999999999997754322 234567999999999
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-08 Score=106.40 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=67.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCCC----C--CcchHHHHhc---------ccCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPAK----H--PQEILSLFSS---------TSDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE~----~--~~~~l~~~~~---------~~~~~~--- 754 (818)
|+||++++++++|++|||+++.+..... ......|+.+|+|||. . +....+.|.. ...+..
T Consensus 133 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~ 212 (288)
T cd05583 133 LENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDG 212 (288)
T ss_pred HHHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCc
Confidence 8999999999999999999987644322 2234568999999992 1 2222223321 111110
Q ss_pred c---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 T---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
. ..++......... +.+......+.+++..|++.+|++||++.+|.+.|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~ 267 (288)
T cd05583 213 EQNSQSEISRRILKSKP-PFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHP 267 (288)
T ss_pred ccchHHHHHHHHHccCC-CCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCc
Confidence 0 0000000000000 11111223456778899999999999999998888776
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-08 Score=78.83 Aligned_cols=61 Identities=44% Similarity=0.591 Sum_probs=39.0
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCC
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL 185 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 185 (818)
++|++|++++|+++...+..|.++++|++|++++|.++...|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666766666655445666666666666666666655555666666666666666653
|
... |
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-08 Score=107.23 Aligned_cols=40 Identities=33% Similarity=0.375 Sum_probs=33.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++..... .....|+..|+|||
T Consensus 146 p~Nill~~~~~~kL~dfg~~~~~~~~---~~~~~~~~~y~aPE 185 (343)
T cd07851 146 PSNIAVNEDCELKILDFGLARHTDDE---MTGYVATRWYRAPE 185 (343)
T ss_pred HHHeEECCCCCEEEcccccccccccc---ccCCcccccccCHH
Confidence 89999999999999999999865432 23456888999999
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-08 Score=105.52 Aligned_cols=40 Identities=30% Similarity=0.460 Sum_probs=34.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++..... .....|+++|+|||
T Consensus 129 p~nili~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE 168 (290)
T cd05580 129 PENLLLDSDGYIKITDFGFAKRVKGR---TYTLCGTPEYLAPE 168 (290)
T ss_pred HHHEEECCCCCEEEeeCCCccccCCC---CCCCCCCccccChh
Confidence 89999999999999999999876443 33457899999999
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-08 Score=99.09 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=37.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
..|.|||.|++.||+||||.|.--.+...+.+.+||+-|+|||
T Consensus 296 LENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPE 338 (516)
T KOG0690|consen 296 LENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPE 338 (516)
T ss_pred hhhheeccCCceEeeecccchhcccccceeccccCChhhcCch
Confidence 4799999999999999999996555556677899999999999
|
|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-08 Score=117.94 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=64.2
Q ss_pred ccccccCCC-----------------CcccccccccceeccCCCCCccccccccceeCCCC-----C-CcchHHHHhcc-
Q 003465 694 FNNILLNSE-----------------FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-----H-PQEILSLFSST- 749 (818)
Q Consensus 694 ~~NILLd~~-----------------~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-----~-~~~~l~~~~~~- 749 (818)
|+||||+.+ ..+||+|||+++.+.... ......||+.|+|||. . .+...+.|+..
T Consensus 153 PeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s-~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ 231 (1021)
T PTZ00266 153 PQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIES-MAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGC 231 (1021)
T ss_pred HHHeEeecCccccccccccccccCCCCceEEccCCccccccccc-cccccCCCccccCHHHHhccCCCCCchhHHHHHHH
Confidence 789999653 458999999998764332 2345679999999991 1 12233445321
Q ss_pred --------cCCCc---cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHH--HHHccC
Q 003465 750 --------SDPHI---TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVS--QEFLKF 807 (818)
Q Consensus 750 --------~~~~~---~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~--~~L~~~ 807 (818)
..+.. ...+++........ .........+.+++..|++.+|++||++.|++ ..+..+
T Consensus 232 ILYELLTGk~PF~~~~~~~qli~~lk~~p~-lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i 301 (1021)
T PTZ00266 232 IIYELCSGKTPFHKANNFSQLISELKRGPD-LPIKGKSKELNILIKNLLNLSAKERPSALQCLGYQIIKNV 301 (1021)
T ss_pred HHHHHHHCCCCCCcCCcHHHHHHHHhcCCC-CCcCCCCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhc
Confidence 11111 11111111000000 00011234566788899999999999999998 445444
|
|
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-08 Score=110.26 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.5
Q ss_pred ccccccCCCCccccccccccee
Q 003465 694 FNNILLNSEFEAFFGNFGVARL 715 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~ 715 (818)
|+|||+|.++.+||+|||+++.
T Consensus 129 p~NILl~~~g~~kL~DFGla~~ 150 (382)
T cd05625 129 PDNILIDRDGHIKLTDFGLCTG 150 (382)
T ss_pred HHHEEECCCCCEEEeECCCCcc
Confidence 8999999999999999999864
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-08 Score=105.91 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=65.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc--hHHHHhcccC---------C--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE--ILSLFSSTSD---------P--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~--~l~~~~~~~~---------~--~~~~~ 757 (818)
..|||||.+|+.||+|||++-.+... ....+.+|++.|.||| ...++ .++.|+.... + ...+.
T Consensus 183 ~eNilL~~~mnikIaDfgfS~~~~~~-~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk 261 (596)
T KOG0586|consen 183 AENILLDENMNIKIADFGFSTFFDYG-LMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLK 261 (596)
T ss_pred hhhcccccccceeeeccccceeeccc-ccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccc
Confidence 68999999999999999999988633 3445679999999999 22232 5666754322 1 12222
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+.-++.+.+..+ .+.-.-..+-++...-+-.+|.+|+++.++.+
T Consensus 262 ~Lr~rvl~gk~r-Ip~~ms~dce~lLrk~lvl~Pskr~~~dqim~ 305 (596)
T KOG0586|consen 262 ELRPRVLRGKYR-IPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMK 305 (596)
T ss_pred cccchheeeeec-ccceeechhHHHHHHhhccCccccCCHHHhhh
Confidence 222222222210 00000112233444667799999999999874
|
|
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-08 Score=107.03 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.5
Q ss_pred ccccccCCCCcccccccccceec
Q 003465 694 FNNILLNSEFEAFFGNFGVARLL 716 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~ 716 (818)
|+|||+|.++++||+|||+++.+
T Consensus 129 p~NIli~~~~~vkL~DfG~~~~~ 151 (360)
T cd05627 129 PDNLLLDAKGHVKLSDFGLCTGL 151 (360)
T ss_pred HHHEEECCCCCEEEeeccCCccc
Confidence 89999999999999999999755
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.3e-08 Score=107.83 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.7
Q ss_pred ccccccCCCCccccccccccee
Q 003465 694 FNNILLNSEFEAFFGNFGVARL 715 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~ 715 (818)
|+|||++.++++|++|||+++.
T Consensus 129 p~NIll~~~~~~kl~DfGla~~ 150 (377)
T cd05629 129 PDNILIDRGGHIKLSDFGLSTG 150 (377)
T ss_pred HHHEEECCCCCEEEeecccccc
Confidence 8999999999999999999974
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.4e-08 Score=101.69 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=63.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+||++++++.+|++|||+++.... .....|+..|+||| ..+....+.|.. ...+ .....+
T Consensus 125 p~nil~~~~~~~~l~dfg~~~~~~~----~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 200 (260)
T cd05611 125 PENLLIDQTGHLKLTDFGLSRNGLE----NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDA 200 (260)
T ss_pred HHHeEECCCCcEEEeecccceeccc----cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHH
Confidence 8999999999999999999986533 23456889999999 212222223321 1111 111111
Q ss_pred eecc----cCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHcc
Q 003465 759 ILDQ----RISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLK 806 (818)
Q Consensus 759 ~~d~----~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~ 806 (818)
+.+. ...... .........+.+++..|++.+|++||++.++.+.|..
T Consensus 201 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~ 251 (260)
T cd05611 201 VFDNILSRRINWPE-EVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSH 251 (260)
T ss_pred HHHHHHhcccCCCC-cccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHcC
Confidence 1111 111110 1111234567788889999999999988776665543
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.4e-08 Score=104.46 Aligned_cols=40 Identities=33% Similarity=0.346 Sum_probs=33.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+|++|||+++..... .....|+..|+|||
T Consensus 146 p~Nill~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE 185 (343)
T cd07880 146 PGNLAVNEDCELKILDFGLARQTDSE---MTGYVVTRWYRAPE 185 (343)
T ss_pred HHHEEEcCCCCEEEeecccccccccC---ccccccCCcccCHH
Confidence 89999999999999999999865432 23446788999999
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.1e-08 Score=102.35 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=60.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC------Ccc-hHHHHhcc---------cCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH------PQE-ILSLFSST---------SDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~------~~~-~l~~~~~~---------~~~--~~~ 755 (818)
|+||++++++.+|++|||++.... ......|+..|+|||.. ..+ ..+.|+.. ..+ ...
T Consensus 149 p~nili~~~~~~kL~dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~ 224 (313)
T cd06633 149 AGNILLTEPGQVKLADFGSASKSS----PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN 224 (313)
T ss_pred hhhEEECCCCCEEEeecCCCcccC----CCCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 899999999999999999986432 12345789999999931 111 22333211 111 100
Q ss_pred -ccc---eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 -LTY---ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 -~~~---~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
... +......... .......+.+++..|++.+|.+||++.++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~ 273 (313)
T cd06633 225 AMSALYHIAQNDSPTLQ---SNEWTDSFRGFVDYCLQKIPQERPASAELLRH 273 (313)
T ss_pred hHHHHHHHHhcCCCCCC---ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000 0000000000 11112345667779999999999999998853
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.2e-08 Score=107.20 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.4
Q ss_pred ccccccCCCCccccccccccee
Q 003465 694 FNNILLNSEFEAFFGNFGVARL 715 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~ 715 (818)
|+|||+|.++.+||+|||+|+.
T Consensus 129 p~Nill~~~~~ikL~DFG~a~~ 150 (376)
T cd05598 129 PDNILIDRDGHIKLTDFGLCTG 150 (376)
T ss_pred HHHEEECCCCCEEEEeCCCCcc
Confidence 8999999999999999999853
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.6e-08 Score=98.40 Aligned_cols=105 Identities=23% Similarity=0.240 Sum_probs=61.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHh---------cccCCC--ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFS---------STSDPH--ITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~---------~~~~~~--~~~~~ 758 (818)
|+||++++++++|++|||+++.............|+.+|+||| ..+....+.|. ....+. ....+
T Consensus 121 p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~ 200 (250)
T cd05123 121 PENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKE 200 (250)
T ss_pred cceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH
Confidence 8999999999999999999987654333345567899999999 11211222222 111111 10011
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQR 799 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~ 799 (818)
+.+....... ..+......+.+++..|+..+|++||++.+
T Consensus 201 ~~~~~~~~~~-~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~ 240 (250)
T cd05123 201 IYEKILKDPL-RFPEFLSPEARDLISGLLQKDPTKRLGSGG 240 (250)
T ss_pred HHHHHhcCCC-CCCCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence 1111111110 111122345567788999999999999954
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=98.40 Aligned_cols=42 Identities=33% Similarity=0.441 Sum_probs=34.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
++||+++.++.+|++|||+++...... ......|+..|+|||
T Consensus 121 ~~nilv~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~~~PE 162 (262)
T cd05572 121 PENLLLDSNGYVKLVDFGFAKKLKSGQ-KTWTFCGTPEYVAPE 162 (262)
T ss_pred HHHEEEcCCCCEEEeeCCcccccCccc-ccccccCCcCccChh
Confidence 799999999999999999998775432 223457899999999
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=103.29 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=32.1
Q ss_pred ccccccC-CCCcccccccccceeccCCC---CCccccccccceeCCC
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDS---SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~---~~~~~~~gt~gy~aPE 736 (818)
++||+++ ++..+|++|||+++.+.... ...+...|+..|+|||
T Consensus 142 p~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE 188 (342)
T cd07854 142 PANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPR 188 (342)
T ss_pred HHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHH
Confidence 8999998 45678999999998764321 1123446888999999
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.1e-08 Score=93.12 Aligned_cols=111 Identities=20% Similarity=0.159 Sum_probs=67.4
Q ss_pred ccccccCCCCcccccccccceeccCC---CC------CccccccccceeCCC----CC---CcchHHHHhcc--------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD---SS------NRTLIAGTYRYIAPA----KH---PQEILSLFSST-------- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~---~~------~~~~~~gt~gy~aPE----~~---~~~~l~~~~~~-------- 749 (818)
|.|||+.+++.|++.|||-+....-. ++ .+..-.-|..|-||| +. -++..+.|+-.
T Consensus 157 P~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf 236 (302)
T KOG2345|consen 157 PANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMF 236 (302)
T ss_pred cceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHH
Confidence 89999999999999999988755311 11 123344678899999 10 01122234311
Q ss_pred -cC-------CCcc-ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 750 -SD-------PHIT-LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 750 -~~-------~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.. ..++ ...+..+.+..+. ...-.+.+.++..+|++.||.+||+..+++..++..
T Consensus 237 ~~sPfe~~~~~GgSlaLAv~n~q~s~P~---~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~L 300 (302)
T KOG2345|consen 237 GESPFERIYQQGGSLALAVQNAQISIPN---SSRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDL 300 (302)
T ss_pred cCCcchHHhhcCCeEEEeeeccccccCC---CCCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence 11 1122 1223344443322 111334556677799999999999999999888754
|
|
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=98.55 E-value=8e-08 Score=99.60 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=61.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CC---Ccc------hHHHHhcccCC--Cccc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KH---PQE------ILSLFSSTSDP--HITL-- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~---~~~------~l~~~~~~~~~--~~~~-- 756 (818)
|+||++|+++.+|++|||++....... ......|+..|+||| .. ..| .+..+.....+ ....
T Consensus 128 ~~nil~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~ 206 (258)
T cd05578 128 PDNILLDEQGHVHITDFNIATKVTPDT-LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTI 206 (258)
T ss_pred HHHeEEcCCCCEEEeecccccccCCCc-cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccH
Confidence 899999999999999999998764332 234466889999999 11 111 11111111111 1110
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh--HHHH
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM--QRVS 801 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m--~~V~ 801 (818)
.+.+...........+......+.+++..|++.+|.+||++ +|+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~ 253 (258)
T cd05578 207 RDQIRAKQETADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLK 253 (258)
T ss_pred HHHHHHHhccccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence 00000111100001122233566678889999999999999 5543
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-08 Score=111.09 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=36.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.+..... .....+||..|+|||
T Consensus 295 P~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE 338 (501)
T PHA03210 295 LENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPE 338 (501)
T ss_pred HHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCch
Confidence 8999999999999999999998754322 234567999999999
|
|
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-07 Score=100.33 Aligned_cols=43 Identities=9% Similarity=0.150 Sum_probs=33.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC-------CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE 736 (818)
++||+++.++.+|++|||.+..+..... ......++.+|+|||
T Consensus 129 ~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE 178 (314)
T cd08216 129 ASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPE 178 (314)
T ss_pred cceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHH
Confidence 8999999999999999999876532211 123456888999999
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=97.86 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=63.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcchHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQEILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~~l~~~~~~-----------~~~~~~~~~ 758 (818)
++||+++++ .+|++|||+++.............|+..|+|||. .+....+.|... .+......+
T Consensus 134 ~~nili~~~-~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~ 212 (260)
T cd08222 134 AKNIFLKNN-LLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLS 212 (260)
T ss_pred hhheEeecC-CEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHH
Confidence 899999864 5999999999887544333345678999999991 111122233211 111111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.......+.....+......+.+++.+|++.+|++||++.++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 256 (260)
T cd08222 213 VVLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILR 256 (260)
T ss_pred HHHHHHcCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence 11111111110112233446677888999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.6e-08 Score=101.46 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=61.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC--------------------CccccccccceeCCC----CCCcchHHHHhc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--------------------NRTLIAGTYRYIAPA----KHPQEILSLFSS- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--------------------~~~~~~gt~gy~aPE----~~~~~~l~~~~~- 748 (818)
++||++++++.+|++|||+++....... ......|+.+|+||| ..+....+.|..
T Consensus 130 ~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG 209 (280)
T cd05581 130 PENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALG 209 (280)
T ss_pred HHHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHH
Confidence 7899999999999999999987643221 123456889999999 222222223321
Q ss_pred --------ccCCCcccc--ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh----HHHHH
Q 003465 749 --------TSDPHITLT--YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM----QRVSQ 802 (818)
Q Consensus 749 --------~~~~~~~~~--~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m----~~V~~ 802 (818)
...+..... ..+........ ..+......+.+++..|++.+|.+||++ .++++
T Consensus 210 ~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~ 276 (280)
T cd05581 210 CIIYQMLTGKPPFRGSNEYLTFQKILKLEY-SFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA 276 (280)
T ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHhcCC-CCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence 111110000 00000000000 0111223456778889999999999999 66653
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=99.79 Aligned_cols=108 Identities=18% Similarity=0.099 Sum_probs=61.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC----CCcc-hHHHHhcc---------cCCCcc----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK----HPQE-ILSLFSST---------SDPHIT---- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~----~~~~-~l~~~~~~---------~~~~~~---- 755 (818)
|+|||+|+++.+|++|||+++..... ......||.+|+|||. ...+ ..+.|+.. ..+...
T Consensus 125 p~Nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~ 202 (279)
T cd05633 125 PANILLDEHGHVRISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK 202 (279)
T ss_pred HHHEEECCCCCEEEccCCcceecccc--CccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCc
Confidence 89999999999999999999865332 2233469999999992 1111 22333311 111100
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHHH
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQE 803 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~~ 803 (818)
....++..........+......+.++...|++.+|++|| +++|+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h 255 (279)
T cd05633 203 DKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH 255 (279)
T ss_pred CHHHHHHHhhcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence 0000110000000001112233455677799999999999 58888764
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.8e-08 Score=101.25 Aligned_cols=43 Identities=30% Similarity=0.570 Sum_probs=34.9
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++++||+|||+++...... .......|+..|+|||
T Consensus 133 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE 176 (290)
T cd05613 133 LENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPD 176 (290)
T ss_pred HHHeEECCCCCEEEeeCccceecccccccccccccCCcccCChh
Confidence 899999999999999999998764432 2223466899999999
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-07 Score=102.64 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=35.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++.+||+|||+++.+..... .....+||++|+|||
T Consensus 130 p~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE 173 (332)
T cd05623 130 PDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPE 173 (332)
T ss_pred HHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHH
Confidence 8999999999999999999987644332 233467999999999
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-07 Score=101.59 Aligned_cols=43 Identities=28% Similarity=0.429 Sum_probs=34.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE 736 (818)
|+|||++.++++||+|||+++.+...... .....||++|+|||
T Consensus 130 p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE 173 (331)
T cd05597 130 PDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPE 173 (331)
T ss_pred HHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHH
Confidence 89999999999999999999876543322 23456999999999
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6e-08 Score=90.49 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=35.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++.+||+|||++..+.++ -..|..+|.-.|||||
T Consensus 177 PsNiLIn~~GqVKiCDFGIsG~L~dS-iAkt~daGCkpYmaPE 218 (282)
T KOG0984|consen 177 PSNILINYDGQVKICDFGISGYLVDS-IAKTMDAGCKPYMAPE 218 (282)
T ss_pred cceEEEccCCcEEEcccccceeehhh-hHHHHhcCCCccCChh
Confidence 99999999999999999999987543 3334467888999999
|
|
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-08 Score=95.92 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=34.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE 736 (818)
+.|||++.++..|+||||+||.+..... ..|.-+-|..|.+||
T Consensus 152 aaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppE 198 (376)
T KOG0669|consen 152 AANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPE 198 (376)
T ss_pred HhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHH
Confidence 7899999999999999999998854322 124455689999999
|
|
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-08 Score=105.14 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=35.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE 736 (818)
|+|||+|.++.+||+|||+++........ .....||++|+|||
T Consensus 130 p~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE 173 (331)
T cd05624 130 PDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPE 173 (331)
T ss_pred hHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHH
Confidence 89999999999999999999877544322 23467999999999
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-07 Score=97.33 Aligned_cols=107 Identities=18% Similarity=0.097 Sum_probs=61.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---C-C-cchHHHHhc---------ccCCCccc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---H-P-QEILSLFSS---------TSDPHITL--- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~-~-~~~l~~~~~---------~~~~~~~~--- 756 (818)
|+||++++++.+|++|||+++..... ......|+..|+|||. . . +...+.|+. ...+....
T Consensus 125 p~nili~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~ 202 (278)
T cd05606 125 PANILLDEHGHVRISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK 202 (278)
T ss_pred HHHEEECCCCCEEEccCcCccccCcc--CCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCcc
Confidence 89999999999999999999865322 2223569999999991 1 1 111223321 11111100
Q ss_pred -cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 757 -TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 757 -~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
...++..........+......+.++...|++.+|.+|| ++.++.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~ 254 (278)
T cd05606 203 DKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 254 (278)
T ss_pred chHHHHHHhhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence 000111110000011112234566777899999999999 8888874
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-07 Score=96.72 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=34.2
Q ss_pred ccccccCCCCcccccccccceeccCC---CCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD---SSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~---~~~~~~~~gt~gy~aPE 736 (818)
|+||++|+++.+||+|||+++..... ....+...|+..|+|||
T Consensus 134 p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE 179 (264)
T cd06653 134 GANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPE 179 (264)
T ss_pred HHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHh
Confidence 89999999999999999999866321 11223466899999999
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.3e-07 Score=96.55 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 775 DIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 775 ~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+.+++..|++.+|++|||+.||++
T Consensus 280 ~~~~~~~li~~~l~~dP~~Rpta~e~l~ 307 (328)
T cd08226 280 FSPAFQNLVELCLQQDPEKRPSASSLLS 307 (328)
T ss_pred hhHHHHHHHHHHccCCcccCCCHHHHhh
Confidence 3456788999999999999999999974
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.1e-07 Score=95.40 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=33.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
++||++++++.+|++|||+++...... ......|+..|+|||
T Consensus 123 p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~y~~PE 164 (277)
T cd05577 123 PENVLLDDHGNVRISDLGLAVELKGGK-KIKGRAGTPGYMAPE 164 (277)
T ss_pred HHHEEECCCCCEEEccCcchhhhccCC-ccccccCCCCcCCHH
Confidence 899999999999999999998764422 223456888999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-07 Score=89.79 Aligned_cols=107 Identities=12% Similarity=0.081 Sum_probs=64.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCCCc---ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDPHI---TLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~~~---~~~ 757 (818)
|+|||+++++.+|+ ||+++...... ..||++||||| ..+.+ ..+.|+.. ..+.. ...
T Consensus 39 p~Nil~~~~~~~~~--fG~~~~~~~~~-----~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~ 111 (176)
T smart00750 39 SGNILLTWDGLLKL--DGSVAFKTPEQ-----SRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELS 111 (176)
T ss_pred cccEeEcCccceee--ccceEeecccc-----CCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhc
Confidence 78999999999999 99998764432 26899999999 22221 23334311 11111 001
Q ss_pred ----ceecccCCC--cCccchHHHH--HHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 ----YILDQRISP--PKKQKIVQDI--ALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ----~~~d~~l~~--~~~~~~~~~~--~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.++...... .......... ..+.+++.+|++.+|++||++.|+++.+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~ 169 (176)
T smart00750 112 AILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRAL 169 (176)
T ss_pred HHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence 111110100 0000111111 2478899999999999999999999988654
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-07 Score=97.95 Aligned_cols=43 Identities=7% Similarity=0.176 Sum_probs=30.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC-------CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+|++|||.+........ ......++..|+|||
T Consensus 129 p~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE 178 (327)
T cd08227 129 ASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPE 178 (327)
T ss_pred hhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChH
Confidence 8999999999999999987654321110 112235778899999
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.1e-07 Score=99.77 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=33.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++....+... .....+|++|+|||
T Consensus 337 p~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE 380 (507)
T PLN03224 337 PENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPE 380 (507)
T ss_pred hHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChh
Confidence 89999999999999999999866443221 22234578999999
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.6e-07 Score=100.53 Aligned_cols=43 Identities=30% Similarity=0.451 Sum_probs=34.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
-.|||+.+.+.+|++|||.+..+...-.......||+.|||||
T Consensus 140 Ganilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapE 182 (829)
T KOG0576|consen 140 GANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPE 182 (829)
T ss_pred ccceeecccCceeecccCchhhhhhhhhhhhcccCCccccchh
Confidence 4699999999999999999876543222233567999999999
|
|
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.4e-07 Score=92.48 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=60.4
Q ss_pred ccccccCCCC-cccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhcc---------cCCCcc-ccc
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSST---------SDPHIT-LTY 758 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~---------~~~~~~-~~~ 758 (818)
|+||+++.++ .+||+|||+++..... ....|+.+|+||| ..+ ....+.|+.. ..+... ..+
T Consensus 137 p~nil~~~~~~~~~l~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~ 212 (267)
T PHA03390 137 LENVLYDRAKDRIYLCDYGLCKIIGTP----SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDE 212 (267)
T ss_pred HHHEEEeCCCCeEEEecCccceecCCC----ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcc
Confidence 8999999999 9999999999876432 2346899999999 112 1123334321 111100 000
Q ss_pred ee-----cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-hHHHHH
Q 003465 759 IL-----DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-MQRVSQ 802 (818)
Q Consensus 759 ~~-----d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-m~~V~~ 802 (818)
.+ ........ .........+.++...|++.+|++||+ +.++++
T Consensus 213 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~ 261 (267)
T PHA03390 213 ELDLESLLKRQQKKL-PFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIK 261 (267)
T ss_pred hhhHHHHHHhhcccC-CcccccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence 00 01111110 111123345566777999999999996 688764
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-08 Score=111.18 Aligned_cols=179 Identities=30% Similarity=0.260 Sum_probs=104.5
Q ss_pred CccccCCCCCcEEEccccccCCcCCcccCCC-CCCCEEEccCCcCC----------CCCchhhcCCCCCCeeeccCCcCC
Q 003465 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRL-TSLSDLDLSHNSLF----------GPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~----------~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
|-.+..+.+|+.|.+.++.+... ..+..+ ..|++| |.+|.+. |.+..++ ....|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 55677788999999999887631 111111 233333 2222221 1111111 1234556666666665
Q ss_pred CCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCcccc
Q 003465 331 GSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELM 410 (818)
Q Consensus 331 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 410 (818)
.+..++.-++.|+.|+|++|++... ..+..++.|++|||++|.+....--....+ .|+.|.+++|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHH
Confidence 3444556667777777777777643 256677777777777777763322222233 377778888777633 3466
Q ss_pred CCCCCCEEecccCcCcccC-CccccCCCCCCEEECcCCcCC
Q 003465 411 NCFSLQSLILSNNSLTGRI-PSEIRNLSYLHELDLSLNFIS 450 (818)
Q Consensus 411 ~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~ 450 (818)
++.+|+.||+++|-+.+.- -..++.+..|+.|+|.+|++-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777888888888776421 122455667777778887764
|
|
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-06 Score=89.79 Aligned_cols=101 Identities=16% Similarity=-0.041 Sum_probs=57.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---C-CcchHHHHhcccC---------CCcccccee
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---H-PQEILSLFSSTSD---------PHITLTYIL 760 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~-~~~~l~~~~~~~~---------~~~~~~~~~ 760 (818)
|+||+++++..+|++|||+++.+... .....++..|+|||. . ++...+.|..... +.......+
T Consensus 113 p~Nil~~~~~~~~l~df~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~ 189 (237)
T cd05576 113 PNNILLDDRGHIQLTYFSRWSEVEDS---CDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI 189 (237)
T ss_pred HHHEEEcCCCCEEEecccchhccccc---cccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc
Confidence 89999999999999999988765432 223456778999992 1 1222333432110 000000000
Q ss_pred cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHH
Q 003465 761 DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRV 800 (818)
Q Consensus 761 d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V 800 (818)
........ +......+..+...|++.||++||++.++
T Consensus 190 ~~~~~~~~---~~~~~~~~~~li~~~l~~dp~~R~~~~~~ 226 (237)
T cd05576 190 NTHTTLNI---PEWVSEEARSLLQQLLQFNPTERLGAGVA 226 (237)
T ss_pred ccccccCC---cccCCHHHHHHHHHHccCCHHHhcCCCcc
Confidence 00000001 11122345567779999999999997443
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.2e-07 Score=90.07 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=41.2
Q ss_pred ccccccCCC----CcccccccccceeccCCCC---CccccccccceeCCC-----CCCcchHHHHh
Q 003465 694 FNNILLNSE----FEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA-----KHPQEILSLFS 747 (818)
Q Consensus 694 ~~NILLd~~----~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE-----~~~~~~l~~~~ 747 (818)
|.|||+-.+ +.+||+|||+||++...-. ....|+-|+-|-||| +..+..++.|+
T Consensus 160 PaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWA 225 (438)
T KOG0666|consen 160 PANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWA 225 (438)
T ss_pred cceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHH
Confidence 899999888 9999999999998864311 234678899999999 44444556664
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-06 Score=85.71 Aligned_cols=89 Identities=28% Similarity=0.383 Sum_probs=61.8
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCCCCC-----cchHHHHhcccCCCccccceecccCCCc
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKHP-----QEILSLFSSTSDPHITLTYILDQRISPP 767 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~~-----~~~l~~~~~~~~~~~~~~~~~d~~l~~~ 767 (818)
+.||+++. +..++++|||.++.............+..+|++||... ....+.|....
T Consensus 120 ~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~----------------- 182 (215)
T cd00180 120 PENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGV----------------- 182 (215)
T ss_pred HhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCCCchhhhHHHHH-----------------
Confidence 89999999 89999999999987754432234456888999998321 11122222110
Q ss_pred CccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 768 KKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 768 ~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
..-++..+.+++..|++.+|.+||++.++++.
T Consensus 183 ----~~~~l~~~~~~l~~~l~~~p~~R~~~~~l~~~ 214 (215)
T cd00180 183 ----ILYELPELKDLIRKMLQKDPEKRPSAKEILEH 214 (215)
T ss_pred ----HHHHHHHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence 11112567788889999999999999999864
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-08 Score=111.06 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=13.8
Q ss_pred CcCCCCCCcEEEcCCCCCc
Q 003465 96 NFSCFPNLESFRIWYSNIS 114 (818)
Q Consensus 96 ~l~~l~~L~~L~L~~n~~~ 114 (818)
++..+..|++|.|.++++.
T Consensus 104 ~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred eeccccceeeEEecCcchh
Confidence 3667777888888877764
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-06 Score=94.08 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=35.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC--------CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--------~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++.+||+|||+|+.+...+. ..+.+.|++.|+|||
T Consensus 140 P~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe 190 (365)
T PRK09188 140 PQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPD 190 (365)
T ss_pred cceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcc
Confidence 7899999999999999999998754421 114678999999999
|
|
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.4e-07 Score=93.09 Aligned_cols=43 Identities=35% Similarity=0.508 Sum_probs=36.1
Q ss_pred ccccccCC---CCcccccccccceeccCCCC-------CccccccccceeCCC
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE 736 (818)
|.||||.+ -++.||+||||+|+++.++. -++..+||+.|++||
T Consensus 598 PgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPE 650 (775)
T KOG1151|consen 598 PGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPE 650 (775)
T ss_pred CccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcc
Confidence 89999954 57899999999999976543 246789999999999
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1e-06 Score=106.44 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 777 ALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 777 ~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.....++..|++.+|.+||+|.||++
T Consensus 239 ~~~~~~~~~~L~~~P~~Rps~~eil~ 264 (793)
T PLN00181 239 PKEASFCLWLLHPEPSCRPSMSELLQ 264 (793)
T ss_pred HHHHHHHHHhCCCChhhCcChHHHhh
Confidence 34567778999999999999999975
|
|
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.5e-07 Score=96.01 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=62.4
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCC--CCCcc-hHHHH---------hcccCCC---cccc
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--KHPQE-ILSLF---------SSTSDPH---ITLT 757 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~~~~~-~l~~~---------~~~~~~~---~~~~ 757 (818)
..||++.. -+.+||+|.|||.++.... ...+.||+-+|||| ...++ .++.+ +-..++. ....
T Consensus 173 CDNIFinG~~G~VKIGDLGLAtl~r~s~--aksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~A 250 (632)
T KOG0584|consen 173 CDNIFVNGNLGEVKIGDLGLATLLRKSH--AKSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSECTNPA 250 (632)
T ss_pred cceEEEcCCcCceeecchhHHHHhhccc--cceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhhhCCHH
Confidence 68999965 6799999999999875432 23488999999999 22222 12222 1122221 2233
Q ss_pred ceecccCCCcCcc-chHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQ-KIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~-~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+|..+...+..+. ...-.-..+-+++-.|+.. .++||+..|.++
T Consensus 251 QIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~ 295 (632)
T KOG0584|consen 251 QIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELLK 295 (632)
T ss_pred HHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHhh
Confidence 3333333332200 0000112344566699999 999999999874
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.2e-07 Score=89.54 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=26.0
Q ss_pred CCCCEEEcCCCcccccC-CcCcCCCCCCCEEeccCCcCCCC-CCcccCCCCCCCEEEccCCcCc
Q 003465 341 ENLERVDMSSNKLEGPI-PLTIGDLTNLIYLDLSLNQLSGP-IPSTFGHLTLLKFLNLNSNKLN 402 (818)
Q Consensus 341 ~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 402 (818)
+++..+.+..|.+...- ......+|.+..|+|+.|+|... --+.+..+++|..|.+++|.+.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 34445555555443211 11233344444555555554321 0122344444444555444443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-08 Score=99.45 Aligned_cols=176 Identities=20% Similarity=0.164 Sum_probs=79.2
Q ss_pred CCEEEccCCCCCCC-CccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCc-CCC-CCCCCCCCCCcceEEE
Q 003465 175 LSILDLSSNSLVGP-IPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNK-LNG-PIASTIGDLTNLNSLD 251 (818)
Q Consensus 175 L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~~L~~L~ 251 (818)
|++|||++..++.. +...++.+.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++. ...-.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44445444444311 11123344445555555555444444444444555555554432 110 0011233445555555
Q ss_pred ccCCCCCCCCCccc-cC-CCCCcEEEccccccC---CcCCcccCCCCCCCEEEccCCcC-CCCCchhhcCCCCCCeeecc
Q 003465 252 LSSKQLSGPLPQEI-GY-LENLVYLSLNVNNLT---GPIPSTLGRLTSLSDLDLSHNSL-FGPIPPTLSHLTRLTTLKLF 325 (818)
Q Consensus 252 L~~n~l~~~~~~~l-~~-l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~L~ 325 (818)
++++.+.......+ .. -++|+.|+|+++.-. ..+..-...+++|.+|||++|.. +......|.+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 55554432211111 00 234555555554211 01111224566677777766542 22222344566677777776
Q ss_pred CCcCCCCcCc---cccCCCCCCEEEcCCCc
Q 003465 326 SNQINGSIPL---GIGNLENLERVDMSSNK 352 (818)
Q Consensus 326 ~n~l~~~~~~---~l~~l~~L~~L~Ls~n~ 352 (818)
.|.. .+|. .+...|+|.+|++.++-
T Consensus 347 RCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 347 RCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhcC--CChHHeeeeccCcceEEEEecccc
Confidence 6642 2333 24566777777776653
|
|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-06 Score=100.66 Aligned_cols=43 Identities=26% Similarity=0.462 Sum_probs=36.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-ccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~gy~aPE 736 (818)
|.|||||..|+.|+||||-+-.+..++.. ....+||+-|++||
T Consensus 203 PDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPE 246 (1317)
T KOG0612|consen 203 PDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPE 246 (1317)
T ss_pred cceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHH
Confidence 99999999999999999988766655443 45678999999999
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.7e-07 Score=88.37 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=44.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC--C-CCcc-hHHHHhc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--K-HPQE-ILSLFSS 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~-~~~~-~l~~~~~ 748 (818)
..|||||.+++.|++|||+.|.--.+...+++.+||+.|+||| | ..+. .+.+|+-
T Consensus 379 ldnvlldaeghikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwal 437 (593)
T KOG0695|consen 379 LDNVLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWAL 437 (593)
T ss_pred ccceEEccCCceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHH
Confidence 5799999999999999999997656666778899999999999 2 1112 5667753
|
|
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.9e-06 Score=88.57 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=64.4
Q ss_pred cccccc-CCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc--hHHHHh-----------cccCCCc--
Q 003465 694 FNNILL-NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE--ILSLFS-----------STSDPHI-- 754 (818)
Q Consensus 694 ~~NILL-d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~--~l~~~~-----------~~~~~~~-- 754 (818)
|.||.. ..-+-+|++|||++--+..+.. -++.+|+..|-||| ...+| .++.|. +..+++.
T Consensus 146 PENVVFFEKlGlVKLTDFGFSNkf~PG~k-L~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeAND 224 (864)
T KOG4717|consen 146 PENVVFFEKLGLVKLTDFGFSNKFQPGKK-LTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEAND 224 (864)
T ss_pred cceeEEeeecCceEeeeccccccCCCcch-hhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccc
Confidence 788654 6677899999999987765543 34578999999999 22222 334443 2222221
Q ss_pred --cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 --TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 --~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+.-|+|-+..- +...-.++-.++-..+..||++|-+..|++.
T Consensus 225 SETLTmImDCKYtv-----PshvS~eCrdLI~sMLvRdPkkRAslEeI~s 269 (864)
T KOG4717|consen 225 SETLTMIMDCKYTV-----PSHVSKECRDLIQSMLVRDPKKRASLEEIVS 269 (864)
T ss_pred hhhhhhhhcccccC-----chhhhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence 223334433321 2222233445666888999999999999884
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-07 Score=91.04 Aligned_cols=138 Identities=22% Similarity=0.205 Sum_probs=60.4
Q ss_pred cCCCCCCCEEEccCCCCCCCCccC----CCCCCCCcEEEcccCcCCccCCcc-------------ccCCCCCCEEEccCC
Q 003465 169 LGHLTRLSILDLSSNSLVGPIPFT----LGHLTQLTTLKLFSNQINGCIPLD-------------FGNLRHLKEVDLSGN 231 (818)
Q Consensus 169 l~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~-------------l~~l~~L~~L~l~~n 231 (818)
+.++++|+..+||+|.+....|.. +++-+.|.+|.+++|.+.-..... ..+-+.|+++....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 334455555555555544333322 234455555555555443111111 123355666666666
Q ss_pred cCCCCCC----CCCCCCCcceEEEccCCCCCCCC-----CccccCCCCCcEEEccccccCCc----CCcccCCCCCCCEE
Q 003465 232 KLNGPIA----STIGDLTNLNSLDLSSKQLSGPL-----PQEIGYLENLVYLSLNVNNLTGP----IPSTLGRLTSLSDL 298 (818)
Q Consensus 232 ~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L 298 (818)
++..-.. ..+..-..|+.+.+..|.|.... ...+.++.+|+.|+|..|.++.. +...+...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 6542110 11222245566666666544210 01123455566666666655422 11222333445555
Q ss_pred EccCCcCC
Q 003465 299 DLSHNSLF 306 (818)
Q Consensus 299 ~Ls~n~l~ 306 (818)
.+.+|-++
T Consensus 248 ~lnDClls 255 (388)
T COG5238 248 RLNDCLLS 255 (388)
T ss_pred cccchhhc
Confidence 55555443
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.2e-07 Score=87.03 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=44.1
Q ss_pred ccccccCCCCcccccccccceeccCC-CCCccccccccceeCCC-----CCCcchHHHHhccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD-SSNRTLIAGTYRYIAPA-----KHPQEILSLFSSTS 750 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~-~~~~~~~~gt~gy~aPE-----~~~~~~l~~~~~~~ 750 (818)
|.|.|++++...||+||||||.-+.+ ...+|.-+-|-.|-||| |+.+..++.|+...
T Consensus 184 PGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGC 246 (449)
T KOG0664|consen 184 PGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGC 246 (449)
T ss_pred CccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhH
Confidence 89999999999999999999976544 33456666788999999 44444566676543
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.2e-06 Score=92.36 Aligned_cols=104 Identities=20% Similarity=0.146 Sum_probs=64.9
Q ss_pred cccccc-CCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcccC-----------CCcccc
Q 003465 694 FNNILL-NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSSTSD-----------PHITLT 757 (818)
Q Consensus 694 ~~NILL-d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~~~-----------~~~~~~ 757 (818)
|+|||+ ++.++.|++|||.++.+..+ ..+.+-|..|.||| ..++..-++|.-... ....-.
T Consensus 443 p~NIL~~~~~g~lrltyFG~a~~~~~~---~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~ 519 (612)
T KOG0603|consen 443 PGNILLDGSAGHLRLTYFGFWSELERS---CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG 519 (612)
T ss_pred hhheeecCCCCcEEEEEechhhhCchh---hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch
Confidence 999999 69999999999999987655 22357788999999 223335556653221 111011
Q ss_pred ceecccC-CCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 758 YILDQRI-SPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 758 ~~~d~~l-~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
..+-.++ .++......+++. ++.-.|++.+|.+||+|.++...
T Consensus 520 ~ei~~~i~~~~~s~~vS~~AK---dLl~~LL~~dP~~Rl~~~~i~~h 563 (612)
T KOG0603|consen 520 IEIHTRIQMPKFSECVSDEAK---DLLQQLLQVDPALRLGADEIGAH 563 (612)
T ss_pred HHHHHhhcCCccccccCHHHH---HHHHHhccCChhhCcChhhhccC
Confidence 1122222 2222111223333 45559999999999999998753
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.8e-08 Score=93.92 Aligned_cols=156 Identities=21% Similarity=0.161 Sum_probs=69.5
Q ss_pred CCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCc-CCCC-cCccccCCCCCCEEEcCCCcccccCCcCc--CCCC
Q 003465 290 GRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQ-INGS-IPLGIGNLENLERVDMSSNKLEGPIPLTI--GDLT 365 (818)
Q Consensus 290 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~ 365 (818)
..|.+|+.|.|.++++.+.+...+.+..+|+.|+|+.+. ++.. ...-+.+|+.|..|+++-|.+.......+ .--+
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 344555555555555554444445555555555555432 1110 00113445555555555554432211100 0013
Q ss_pred CCCEEeccCCcCC---CCCCcccCCCCCCCEEEccCCc-CcccCCccccCCCCCCEEecccCcCcccCCcc---ccCCCC
Q 003465 366 NLIYLDLSLNQLS---GPIPSTFGHLTLLKFLNLNSNK-LNGSIPSELMNCFSLQSLILSNNSLTGRIPSE---IRNLSY 438 (818)
Q Consensus 366 ~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~ 438 (818)
+|+.|+|+++.-. ..+......+++|..|||++|. ++...-..|..++.|++|.++.|.. .+|.. +...|+
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPS 364 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcc
Confidence 4555555554211 0111122445666666666553 2222223445556666666666653 23332 345566
Q ss_pred CCEEECcCC
Q 003465 439 LHELDLSLN 447 (818)
Q Consensus 439 L~~L~Ls~N 447 (818)
|.+||+-++
T Consensus 365 l~yLdv~g~ 373 (419)
T KOG2120|consen 365 LVYLDVFGC 373 (419)
T ss_pred eEEEEeccc
Confidence 666666554
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1e-06 Score=86.88 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=30.4
Q ss_pred CCCEEEccCCcCcccC-CccccCCCCCCEEecccCcCcc-cCCccccCCCCCCEEECcCCcCCcc
Q 003465 390 LLKFLNLNSNKLNGSI-PSELMNCFSLQSLILSNNSLTG-RIPSEIRNLSYLHELDLSLNFISGM 452 (818)
Q Consensus 390 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ 452 (818)
++..+.+..|.+...- ...+..++.+-.|+|+.|+|.. ..-+.+..++.|..|.+++|++.+.
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 4444444444443211 1123334455556666666532 1223455666666666666666543
|
|
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=87.75 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=28.9
Q ss_pred ccccccCCCC--cccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEF--EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~--~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||||-+-. .+||.|||.|-.....-. .-.-+..|-|||
T Consensus 317 PENILL~~~~r~~vKVIDFGSSc~~~q~vy---tYiQSRfYRAPE 358 (586)
T KOG0667|consen 317 PENILLKDPKRSRIKVIDFGSSCFESQRVY---TYIQSRFYRAPE 358 (586)
T ss_pred hhheeeccCCcCceeEEecccccccCCcce---eeeeccccccch
Confidence 8999997644 689999999976543221 223456899999
|
|
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.5e-05 Score=81.04 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=61.7
Q ss_pred ccccccCCCCcccccccccceeccC----------------------------------CC------------------C
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNS----------------------------------DS------------------S 721 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~----------------------------------~~------------------~ 721 (818)
|.|||+-++++.-++||-|+..... .. .
T Consensus 207 PENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~ae 286 (459)
T KOG0610|consen 207 PENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAE 286 (459)
T ss_pred cceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcC
Confidence 8999999999999999999753210 00 0
Q ss_pred ----CccccccccceeCCC--CCCc--chHHHHhcc-----------cCC----CccccceecccCCCcCccchHHHHHH
Q 003465 722 ----NRTLIAGTYRYIAPA--KHPQ--EILSLFSST-----------SDP----HITLTYILDQRISPPKKQKIVQDIAL 778 (818)
Q Consensus 722 ----~~~~~~gt~gy~aPE--~~~~--~~l~~~~~~-----------~~~----~~~~~~~~d~~l~~~~~~~~~~~~~~ 778 (818)
-+...+||--|+||| +... ..++||... .++ +.++..|+-+.+..+. ..+....
T Consensus 287 p~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~---~~~vs~~ 363 (459)
T KOG0610|consen 287 PTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIVGQPLKFPE---EPEVSSA 363 (459)
T ss_pred CCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHhcCCCcCCC---CCcchhH
Confidence 012367999999999 2111 156677532 122 2334555555554433 1222334
Q ss_pred HHHHHHhccCCCCCCCCC
Q 003465 779 ASIVALACLQSKPKSVPT 796 (818)
Q Consensus 779 ~~~la~~C~~~~p~~RP~ 796 (818)
+-+++..-+.+||.+|-.
T Consensus 364 akDLIr~LLvKdP~kRlg 381 (459)
T KOG0610|consen 364 AKDLIRKLLVKDPSKRLG 381 (459)
T ss_pred HHHHHHHHhccChhhhhc
Confidence 445666788999999987
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.2e-05 Score=94.91 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=37.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++++||+|||+++.............||+.|+|||
T Consensus 132 P~NILl~~~g~vkL~DFGls~~~~~~~~~~~~~~~t~~~~~pe 174 (669)
T cd05610 132 PDNMLISNEGHIKLTDFGLSKVTLNRELNMMDILTTPSMAKPK 174 (669)
T ss_pred HHHEEEcCCCCEEEEeCCCCccccCCcccccccccCccccCcc
Confidence 8999999999999999999998755444455678999999999
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.1e-06 Score=81.03 Aligned_cols=228 Identities=22% Similarity=0.214 Sum_probs=115.2
Q ss_pred CCCCcceEEEccCCCCCCCCCcc----ccCCCCCcEEEccccccCCc----C-------CcccCCCCCCCEEEccCCcCC
Q 003465 242 GDLTNLNSLDLSSKQLSGPLPQE----IGYLENLVYLSLNVNNLTGP----I-------PSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 242 ~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~----~-------~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
..+..++.++||+|-|...-..+ +.+-.+|+..+++.-- +|. + ...+-.||.|+..+||+|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34667788888888776543333 3344566666665421 111 1 123455666777777777665
Q ss_pred CCCchh----hcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCC-
Q 003465 307 GPIPPT----LSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPI- 381 (818)
Q Consensus 307 ~~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~- 381 (818)
...|+. +++...|++|.+++|.+...-..-++. .|. +|..|+ ...+-|.|+.+....|++....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~--~la~nK-------Kaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALF--HLAYNK-------KAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHH--HHHHHh-------hhccCCCceEEEeccchhccCcH
Confidence 554433 334455666666665543110000110 000 000000 1123355666666666554221
Q ss_pred ---CcccCCCCCCCEEEccCCcCccc-----CCccccCCCCCCEEecccCcCcccC----CccccCCCCCCEEECcCCcC
Q 003465 382 ---PSTFGHLTLLKFLNLNSNKLNGS-----IPSELMNCFSLQSLILSNNSLTGRI----PSEIRNLSYLHELDLSLNFI 449 (818)
Q Consensus 382 ---~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l 449 (818)
...+..-..|+++.+.+|.|... +-..+..+.+|+.|||..|.++-.- ...++..+.|+.|.+..|-+
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 11223335677777777766421 1112345678888888888776422 22345566788888888887
Q ss_pred CccCChhhhcCccccccccccEEECCCCcCcc
Q 003465 450 SGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSG 481 (818)
Q Consensus 450 ~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g 481 (818)
+.................+|..|-..+|...|
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 76655554443322222344444444444443
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.2e-05 Score=78.22 Aligned_cols=105 Identities=10% Similarity=0.161 Sum_probs=62.8
Q ss_pred ccccccCCCCccccc--ccccceeccCCCCCccccccccceeCCC---CCCcc----hHHHHhc---------ccCCC--
Q 003465 694 FNNILLNSEFEAFFG--NFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE----ILSLFSS---------TSDPH-- 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~--DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~----~l~~~~~---------~~~~~-- 753 (818)
+..|++|++++|||+ |--++- ...+-+.++.||+|| ++|.| ..+.|+. +..+.
T Consensus 319 s~hvmidedltarismad~kfsf-------qe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfad 391 (448)
T KOG0195|consen 319 SKHVMIDEDLTARISMADTKFSF-------QEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFAD 391 (448)
T ss_pred cceEEecchhhhheecccceeee-------eccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhcccccccc
Confidence 568999999999985 322111 112335678899999 66766 2233321 11111
Q ss_pred cccc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 754 ITLT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 754 ~~~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..-. .+.-..++... +......+.+++--|..+||.+||.+..|+-.|+++.
T Consensus 392 lspmecgmkialeglrv~i---ppgis~hm~klm~icmnedpgkrpkfdmivpilekm~ 447 (448)
T KOG0195|consen 392 LSPMECGMKIALEGLRVHI---PPGISRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI 447 (448)
T ss_pred CCchhhhhhhhhccccccC---CCCccHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence 1111 11111122111 2333456777888999999999999999999999864
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.6e-07 Score=78.58 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=56.6
Q ss_pred cEEEcCCCCCcc--cCCccccCCCcCceecccCcccccCCCCCCC-CCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 104 ESFRIWYSNISG--NIPSEIGALSKLQILDLSHNNLTGTIPSKLG-NLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 104 ~~L~L~~n~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
..++|+.+.+.. ..+..+.+..+|+..+|++|.+. .+|..|. ..+.++.|+|++|.++ .+|..+..++.|+.|++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 345555554431 11223444555666666666666 3444443 3345666666666666 45555666666666666
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQIN 210 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 210 (818)
+.|.+. ..|..+..|.+|-+|+..+|.+.
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 666655 34444445566666666555544
|
|
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.4e-05 Score=79.12 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=61.8
Q ss_pred ccccccC---CCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCCcc-c
Q 003465 694 FNNILLN---SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPHIT-L 756 (818)
Q Consensus 694 ~~NILLd---~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~~~-~ 756 (818)
|.|+|-. .+-..|++|||+||..... ....+.+-|+.|+||| ...+| .-+.|.- ...+..+ -
T Consensus 189 pENLLyt~t~~na~lKLtDfGFAK~t~~~-~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~h 267 (400)
T KOG0604|consen 189 PENLLYTTTSPNAPLKLTDFGFAKETQEP-GDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNH 267 (400)
T ss_pred hhheeeecCCCCcceEecccccccccCCC-ccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccC
Confidence 8999985 4567899999999975432 2345678999999999 11122 2222321 1111111 0
Q ss_pred cceecccCC-----CcC--ccchHHHHHHHH-HHHHhccCCCCCCCCChHHHHHH
Q 003465 757 TYILDQRIS-----PPK--KQKIVQDIALAS-IVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 757 ~~~~d~~l~-----~~~--~~~~~~~~~~~~-~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
...+.|.+. +.+ .+..+.|+.+.. +++..-+..+|.+|-|+.+|+..
T Consensus 268 g~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~h 322 (400)
T KOG0604|consen 268 GLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDH 322 (400)
T ss_pred CccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcC
Confidence 112233221 111 112334444433 35555678999999999998753
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=78.28 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=7.3
Q ss_pred CCCCcEEEcCCCCCc
Q 003465 100 FPNLESFRIWYSNIS 114 (818)
Q Consensus 100 l~~L~~L~L~~n~~~ 114 (818)
+.++++|++++|.+.
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 344555555555433
|
|
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.2e-05 Score=88.87 Aligned_cols=42 Identities=33% Similarity=0.453 Sum_probs=35.0
Q ss_pred cccccc----CCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILL----NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL----d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|.||++ |..---|++|||.||.+++++ ..+.++||.-|.|||
T Consensus 148 P~NIvl~~Gedgq~IyKLtDfG~Arel~d~s-~~~S~vGT~~YLhPe 193 (732)
T KOG4250|consen 148 PGNIVLQIGEDGQSIYKLTDFGAARELDDNS-LFTSLVGTEEYLHPE 193 (732)
T ss_pred CCcEEEeecCCCceEEeeecccccccCCCCC-eeeeecCchhhcChH
Confidence 899998 344457999999999987665 556789999999998
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00015 Score=77.46 Aligned_cols=32 Identities=34% Similarity=0.295 Sum_probs=16.6
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEecccC
Q 003465 389 TLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423 (818)
Q Consensus 389 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 423 (818)
++|++|++++|... ..|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35666666665543 2233222 46666666555
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.2e-06 Score=74.98 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=77.6
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 176 (818)
+....+|...+|++|.+....+..-.+++.++.|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..|.+|-
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 455567888899999998554444467779999999999999 67888999999999999999998 7888888899999
Q ss_pred EEEccCCCCCCCCccC
Q 003465 177 ILDLSSNSLVGPIPFT 192 (818)
Q Consensus 177 ~L~L~~n~l~~~~~~~ 192 (818)
.|+..+|.+. .+|..
T Consensus 127 ~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 127 MLDSPENARA-EIDVD 141 (177)
T ss_pred HhcCCCCccc-cCcHH
Confidence 9999998876 44443
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=1.9e-05 Score=83.58 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=42.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHh
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFS 747 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~ 747 (818)
|.|.+||.++.+|+-|||+||.+..+...+ +.+||+-|+||| .+..| .++.|+
T Consensus 548 PENllLd~~Gy~KLVDFGFAKki~~g~KTw-TFcGTpEYVAPEIILnKGHD~avDyWa 604 (732)
T KOG0614|consen 548 PENLLLDNRGYLKLVDFGFAKKIGSGRKTW-TFCGTPEYVAPEIILNKGHDRAVDYWA 604 (732)
T ss_pred hhheeeccCCceEEeehhhHHHhccCCcee-eecCCcccccchhhhccCcchhhHHHH
Confidence 999999999999999999999987665544 489999999999 22223 455565
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00011 Score=69.06 Aligned_cols=103 Identities=23% Similarity=0.257 Sum_probs=59.0
Q ss_pred cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCC-ccCCCCCCCCcEEEc
Q 003465 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPI-PFTLGHLTQLTTLKL 204 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L 204 (818)
....+||++|.+... ..|..++.|.+|.|++|+|+.+.|.--..+++|+.|.|.+|.+.... -..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 456677777776532 34666777777777777777555554445566777777777665211 123455666666666
Q ss_pred ccCcCCccC---CccccCCCCCCEEEccC
Q 003465 205 FSNQINGCI---PLDFGNLRHLKEVDLSG 230 (818)
Q Consensus 205 ~~n~l~~~~---~~~l~~l~~L~~L~l~~ 230 (818)
-+|.++..- --.+..+++|+.||+.+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 666654311 11234455555555543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.8e-05 Score=53.54 Aligned_cols=34 Identities=38% Similarity=0.610 Sum_probs=12.2
Q ss_pred CcEEECcCCCCCCCCccccCCCCCCCEEEccCCCC
Q 003465 151 LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL 185 (818)
Q Consensus 151 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 185 (818)
|++|++++|+|+ .+|..+++|++|++|++++|.+
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 333444444333 2232333344444444444333
|
... |
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=5.5e-05 Score=75.66 Aligned_cols=49 Identities=16% Similarity=0.090 Sum_probs=35.1
Q ss_pred cchHHHHHHHhhhhhhcccc----CcEEEEE-cCCCcEEEEEeccccccchhhhhHhhh
Q 003465 638 IAFEEIIRATEDLISDIALE----LDVTAAF-TKHGCLVAEYGSEQGRSAFFKSFQNEA 691 (818)
Q Consensus 638 ~~~~~l~~at~~f~~~~~ig----g~vy~~~-~~~g~~vAvK~~~~~~~~~~~~f~~E~ 691 (818)
-+|+|+.+.|.. .+| +.|--++ +.+|..+|||++.+.......+..+||
T Consensus 73 g~F~d~YkLt~e-----~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREV 126 (463)
T KOG0607|consen 73 GKFEDMYKLTSE-----LLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREV 126 (463)
T ss_pred chHHHHHHhHHH-----HhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHH
Confidence 457888888854 355 5666665 578999999988877655556666776
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=7e-05 Score=53.13 Aligned_cols=37 Identities=49% Similarity=0.629 Sum_probs=18.0
Q ss_pred CCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCc
Q 003465 414 SLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG 451 (818)
Q Consensus 414 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 451 (818)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555 334345555555555555555543
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00021 Score=67.22 Aligned_cols=57 Identities=32% Similarity=0.353 Sum_probs=22.6
Q ss_pred CcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcC
Q 003465 151 LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI 209 (818)
Q Consensus 151 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 209 (818)
...+||++|.+.. + ..|..++.|.+|.|.+|.|+..-|.--..+++|..|.|.+|+|
T Consensus 44 ~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 3444444444431 1 1234444444444444444433332222333344444444433
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.45 E-value=3.7e-05 Score=83.51 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.9
Q ss_pred ccccccCCCCcccccccccceec
Q 003465 694 FNNILLNSEFEAFFGNFGVARLL 716 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~ 716 (818)
|.|||+|.+++.|++||||..-+
T Consensus 757 PDNILIDrdGHIKLTDFGLCTGf 779 (1034)
T KOG0608|consen 757 PDNILIDRDGHIKLTDFGLCTGF 779 (1034)
T ss_pred ccceEEccCCceeeeeccccccc
Confidence 89999999999999999997543
|
|
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00024 Score=71.45 Aligned_cols=42 Identities=33% Similarity=0.329 Sum_probs=36.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++..+...||.|||+|+.-..+ -.+|..+.|..|-|||
T Consensus 146 Psnivv~~~~~lKi~dfg~ar~e~~~-~~mtpyVvtRyyrape 187 (369)
T KOG0665|consen 146 PSNIVVNSDCTLKILDFGLARTEDTD-FMMTPYVVTRYYRAPE 187 (369)
T ss_pred cccceecchhheeeccchhhcccCcc-cccCchhheeeccCch
Confidence 99999999999999999999865443 3456778899999999
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00011 Score=85.41 Aligned_cols=106 Identities=25% Similarity=0.345 Sum_probs=54.5
Q ss_pred CcCceecccCcccccC-CCCCC-CCCCCCcEEECcCCCCCCC-CccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcE
Q 003465 125 SKLQILDLSHNNLTGT-IPSKL-GNLNNLVELYLSRSNLNGP-IPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT 201 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~-~p~~~-~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 201 (818)
.+|++||+++...-.. -|..+ .-||+|+.|.+++-.+... .-....++++|..||+|+++++.. .++++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4566777766433211 11122 2356666666666554321 122345566666666666666533 45566666666
Q ss_pred EEcccCcCCc-cCCccccCCCCCCEEEccCCc
Q 003465 202 LKLFSNQING-CIPLDFGNLRHLKEVDLSGNK 232 (818)
Q Consensus 202 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~ 232 (818)
|.+.+=.+.. ..-..+.+|++|++||+|...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 6655544432 112234556666666665544
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00036 Score=49.36 Aligned_cols=35 Identities=34% Similarity=0.577 Sum_probs=21.8
Q ss_pred HHHHHHHHcCC-------CCCCCCCCCCCCCCCCCccceeeC
Q 003465 38 RLEREALLNTG-------WWNNSREKASNHSDHCKWAGIVCN 72 (818)
Q Consensus 38 ~~~~~~ll~~~-------~~~~~~~~~~~~~~~c~w~gv~c~ 72 (818)
..|++||+.++ ...+.+|......+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 47889998753 234678974223799999999996
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00028 Score=69.38 Aligned_cols=86 Identities=24% Similarity=0.359 Sum_probs=39.4
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCC--CCCCCCccccCCCCCCCEEEccCCCCCCC-CccCCCCCCCC
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRS--NLNGPIPSTLGHLTRLSILDLSSNSLVGP-IPFTLGHLTQL 199 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L 199 (818)
.+..|+.|++.+..++.. ..|..|++|++|.++.| ++.+.++-....+++|++|++++|++... --..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 334444444444444421 23444555555555555 33333333334445555555555555420 00123344455
Q ss_pred cEEEcccCcCC
Q 003465 200 TTLKLFSNQIN 210 (818)
Q Consensus 200 ~~L~L~~n~l~ 210 (818)
..|++.+|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 55555555444
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=59.35 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=43.5
Q ss_pred CCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCC
Q 003465 95 FNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTR 174 (818)
Q Consensus 95 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 174 (818)
..|.++++|+.+.+.. .+...-...|..+++|+.+.+.++ +.......|.++.+|+++.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3466666666666653 344344445666666666666554 4433334555555566666644 222222334455555
Q ss_pred CCEEEccCCCCCCCCccCCCCCCCCcEEEcc
Q 003465 175 LSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205 (818)
Q Consensus 175 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 205 (818)
|+.+++..+ +.......|.+. +|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 555555443 332222334443 55555444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00034 Score=81.23 Aligned_cols=134 Identities=23% Similarity=0.256 Sum_probs=93.5
Q ss_pred CCCcEEEcCCCCCc-ccCCcccc-CCCcCceecccCcccccC-CCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCE
Q 003465 101 PNLESFRIWYSNIS-GNIPSEIG-ALSKLQILDLSHNNLTGT-IPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177 (818)
Q Consensus 101 ~~L~~L~L~~n~~~-~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 177 (818)
.+|++|++++...- ...|..++ .||+|+.|.+++-.+... .-....++++|+.||+|++.++.. ..+++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 47888888875432 22333443 578999999988766532 223456788999999999998744 67889999999
Q ss_pred EEccCCCCCC-CCccCCCCCCCCcEEEcccCcCCccC--C----ccccCCCCCCEEEccCCcCCCC
Q 003465 178 LDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCI--P----LDFGNLRHLKEVDLSGNKLNGP 236 (818)
Q Consensus 178 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~l~~~ 236 (818)
|.+.+=.+.. ..-..+.+|++|++||+|........ . +.-..|++|+.||.+++.+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9888766653 22235678999999999987654221 0 1123478999999998877653
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0019 Score=58.69 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=39.2
Q ss_pred cccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCC
Q 003465 120 EIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199 (818)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 199 (818)
.|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455555666666553 344333445555555666665543 3323333455555555555543 2222222334445555
Q ss_pred cEEEcccCcCCccCCccccCCCCCCEEEcc
Q 003465 200 TTLKLFSNQINGCIPLDFGNLRHLKEVDLS 229 (818)
Q Consensus 200 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 229 (818)
+.+++..+ +.......|.+. +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555433 322223334443 44444443
|
|
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0008 Score=73.85 Aligned_cols=114 Identities=15% Similarity=0.232 Sum_probs=65.4
Q ss_pred ccccccCCCCcccccccccceeccCC--CCCccccccccceeCCC--CC---------Cc---c------hHHHHhcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD--SSNRTLIAGTYRYIAPA--KH---------PQ---E------ILSLFSST-- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~--~~~~~~~~gt~gy~aPE--~~---------~~---~------~l~~~~~~-- 749 (818)
++|.++|..|..|++|||+..+.... ........-..-|.||| +. .+ | .+.+-..+
T Consensus 77 s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~ 156 (484)
T KOG1023|consen 77 SSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSG 156 (484)
T ss_pred cccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccC
Confidence 78999999999999999998877421 11112223345699999 11 11 1 11111111
Q ss_pred cCCC----ccccceecc----c---CCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 750 SDPH----ITLTYILDQ----R---ISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 750 ~~~~----~~~~~~~d~----~---l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.+.. ....+++.+ . .++.. ....+....++.++..||.++|++||++.+|-..++.+.
T Consensus 157 ~~~~~~~~~~~~eii~~~~~~~~~~~rP~i-~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~ 225 (484)
T KOG1023|consen 157 PFDLRNLVEDPDEIILRVKKGGSNPFRPSI-ELLNELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTIN 225 (484)
T ss_pred ccccccccCChHHHHHHHHhcCCCCcCcch-hhhhhcchHHHHHHHHhcccChhhCccHHHHHhhhhhhc
Confidence 1111 000122221 1 11111 001123335788889999999999999999999988774
|
|
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00099 Score=66.90 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=34.6
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPAK 737 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE~ 737 (818)
++||+++.+..++++|||.++...... .......|+..|++||.
T Consensus 126 ~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~ 170 (225)
T smart00221 126 PENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEV 170 (225)
T ss_pred HHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhH
Confidence 789999999999999999998875442 12234567888999984
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00067 Score=70.02 Aligned_cols=29 Identities=10% Similarity=-0.024 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 774 QDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 774 ~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+..+++++....+..||.+|+|.+|+++
T Consensus 377 ~e~~~LfDLl~~mL~fDP~~RiTl~EAL~ 405 (415)
T KOG0671|consen 377 LEHVQLFDLLRRMLEFDPARRITLREALS 405 (415)
T ss_pred HHHhHHHHHHHHHHccCccccccHHHHhc
Confidence 45667889999999999999999999874
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00083 Score=79.34 Aligned_cols=107 Identities=16% Similarity=0.163 Sum_probs=63.5
Q ss_pred cccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCcccc
Q 003465 695 NNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLT 757 (818)
Q Consensus 695 ~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~ 757 (818)
.|++++.+..+++.|||.++....+.. ....++||++|+||| ..+.+ ..+.|... .+......
T Consensus 507 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~ 586 (669)
T cd05610 507 GNLYQTPKQVKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQ 586 (669)
T ss_pred CceeECCccccccccCCCchhhhcccccccCCceeeCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence 367777777789999999988754422 234578999999999 22222 34444321 11111111
Q ss_pred c----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 758 Y----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 758 ~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
+ +++..+.... ........+.++...|++.+|++||+|.||++.
T Consensus 587 ~~~~~il~~~~~~p~--~~~~~~~~~~~~l~~lL~~dP~~R~ta~e~l~h 634 (669)
T cd05610 587 QVFQNILNRDIPWPE--GEEKLSVNAQNAIEILLTMDPTKRAGLKELKQH 634 (669)
T ss_pred HHHHHHHhcCCCCCc--ccccCCHHHHHHHHHHcccChhHCcCHHHHHhC
Confidence 2 2222221111 111223345667778999999999999999865
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0011 Score=64.80 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=19.2
Q ss_pred ccccccCCCCcccccccccceec
Q 003465 694 FNNILLNSEFEAFFGNFGVARLL 716 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~ 716 (818)
|+|||+| +..+|+.|||+|...
T Consensus 146 P~NIli~-~~~v~LiDFG~a~~~ 167 (190)
T cd05147 146 EYNLLYH-DGKLYIIDVSQSVEH 167 (190)
T ss_pred HHHEEEE-CCcEEEEEccccccC
Confidence 8999999 478999999998754
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0023 Score=63.19 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.7
Q ss_pred ccccccCCCCcccccccccceecc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLN 717 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~ 717 (818)
|+||++|+++++||+|||+++...
T Consensus 153 p~Nill~~~~~~~liDfg~~~~~~ 176 (198)
T cd05144 153 EFNILVDDDEKIYIIDWPQMVSTD 176 (198)
T ss_pred cccEEEcCCCcEEEEECCccccCC
Confidence 899999999999999999997553
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0018 Score=69.38 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=52.7
Q ss_pred ccccccCCCC-cccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcccCCCccccceecccCCCcC
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSSTSDPHITLTYILDQRISPPK 768 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~~~~~~~~~~~~d~~l~~~~ 768 (818)
|.|||+.+.- ..|+||||-|-...... .+. -.-+..|-||| ..|++ .+..|..... +.++....+..+.
T Consensus 564 PDNiLVNE~k~iLKLCDfGSA~~~~ene-itP-YLVSRFYRaPEIiLG~~yd~~iD~WSvgct----LYElYtGkIlFpG 637 (752)
T KOG0670|consen 564 PDNILVNESKNILKLCDFGSASFASENE-ITP-YLVSRFYRAPEIILGLPYDYPIDTWSVGCT----LYELYTGKILFPG 637 (752)
T ss_pred ccceEeccCcceeeeccCcccccccccc-ccH-HHHHHhccCcceeecCcccCCccceeecee----eEEeeccceecCC
Confidence 8999998755 68999999987654322 121 12345799999 56666 6778876543 5555555554332
Q ss_pred ccchHHHHHHHHHHHHhccCCCC
Q 003465 769 KQKIVQDIALASIVALACLQSKP 791 (818)
Q Consensus 769 ~~~~~~~~~~~~~la~~C~~~~p 791 (818)
. . -..++++++.|--.-|
T Consensus 638 ~--T---NN~MLrl~me~KGk~p 655 (752)
T KOG0670|consen 638 R--T---NNQMLRLFMELKGKFP 655 (752)
T ss_pred C--C---cHHHHHHHHHhcCCCc
Confidence 1 1 1234455555544443
|
|
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0021 Score=62.91 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.5
Q ss_pred ccccccCCCCcccccccccceeccC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNS 718 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~ 718 (818)
|.|||++ ++++++.|||+|+.+..
T Consensus 146 P~NIll~-~~~~~liDFG~a~~~~~ 169 (190)
T cd05145 146 EYNILYH-DGKPYIIDVSQAVELDH 169 (190)
T ss_pred hhhEEEE-CCCEEEEEcccceecCC
Confidence 8999999 88999999999987653
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=8.8e-05 Score=77.16 Aligned_cols=83 Identities=20% Similarity=0.074 Sum_probs=42.4
Q ss_pred CcCceecccCcccccCC--CCCCCCCCCCcEEECcCCCC-CCCCcccc-CCCCCCCEEEccCCC-CCCCCcc-CCCCCCC
Q 003465 125 SKLQILDLSHNNLTGTI--PSKLGNLNNLVELYLSRSNL-NGPIPSTL-GHLTRLSILDLSSNS-LVGPIPF-TLGHLTQ 198 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~n~l-~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~ 198 (818)
..|+.|.|.++.-.+.- -....+++++++|.+.++.. ++..-..+ ..+++|++|+|..|. ++...-. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35777788777543221 12335677777777777652 21111111 345667777776632 3322111 1124566
Q ss_pred CcEEEcccC
Q 003465 199 LTTLKLFSN 207 (818)
Q Consensus 199 L~~L~L~~n 207 (818)
|++|+++++
T Consensus 218 L~~lNlSwc 226 (483)
T KOG4341|consen 218 LKYLNLSWC 226 (483)
T ss_pred HHHhhhccC
Confidence 666666655
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0032 Score=72.43 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=65.3
Q ss_pred ccccccCCCCcccccccccceeccCC--C--CCccccccccceeCCC---CCCcc--hHHHHhcccCC------C--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD--S--SNRTLIAGTYRYIAPA---KHPQE--ILSLFSSTSDP------H--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~--~--~~~~~~~gt~gy~aPE---~~~~~--~l~~~~~~~~~------~--~~~ 756 (818)
+.|++++.++..||.|||.+-.+..+ . ....+++|+-+|+||| ...++ -+..|...... . +..
T Consensus 448 ~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~ 527 (601)
T KOG0590|consen 448 LENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKV 527 (601)
T ss_pred cccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCcccc
Confidence 78999999999999999999877543 2 3456889999999999 22222 23445431110 0 000
Q ss_pred cceeccc-----------CCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYILDQR-----------ISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~d~~-----------l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...-|+. +...............-.+..+.++.+|.+|-+|.+|++
T Consensus 528 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~ 584 (601)
T KOG0590|consen 528 AKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILN 584 (601)
T ss_pred ccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhh
Confidence 1111110 000000011122334455777889999999999999984
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0029 Score=62.48 Aligned_cols=83 Identities=27% Similarity=0.309 Sum_probs=44.7
Q ss_pred CCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCC--cCcccCCccccCCCCCCEEecccCcCcccCCc---cccCCCCC
Q 003465 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSN--KLNGSIPSELMNCFSLQSLILSNNSLTGRIPS---EIRNLSYL 439 (818)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L 439 (818)
..|+.|++.+..++.. ..|..+++|+.|.++.| ++.+.++.....+++|++|++++|++.. +. .+..+.+|
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 3444444444444422 23445566666666666 4444444444555666777777766652 22 23455566
Q ss_pred CEEECcCCcCCc
Q 003465 440 HELDLSLNFISG 451 (818)
Q Consensus 440 ~~L~Ls~N~l~~ 451 (818)
..||+.+|..+.
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 667776665543
|
|
| >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0056 Score=68.06 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.8
Q ss_pred ccccccCCCCcccccccccceeccC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNS 718 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~ 718 (818)
|.||++++++++++.|||+++.+..
T Consensus 285 PgNilv~~~g~i~liDfG~~~~l~~ 309 (437)
T TIGR01982 285 PGNIFVLKDGKIIALDFGIVGRLSE 309 (437)
T ss_pred cccEEECCCCcEEEEeCCCeeECCH
Confidence 8999999999999999999987753
|
This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. |
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0041 Score=67.59 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=33.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
-.||.+|.++-+|+.|||-|.....+ .--..+||.+|.|||
T Consensus 698 denvivd~~g~~klidfgsaa~~ksg--pfd~f~gtv~~aape 738 (772)
T KOG1152|consen 698 DENVIVDSNGFVKLIDFGSAAYTKSG--PFDVFVGTVDYAAPE 738 (772)
T ss_pred cccEEEecCCeEEEeeccchhhhcCC--Ccceeeeeccccchh
Confidence 57999999999999999988765432 234578999999999
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.00031 Score=69.19 Aligned_cols=82 Identities=27% Similarity=0.164 Sum_probs=42.3
Q ss_pred CCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcC-ccccCCCCCCEEE
Q 003465 269 ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIP-LGIGNLENLERVD 347 (818)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~ 347 (818)
.+.+.|++++|.+++. .....++.|+.|.|+-|+++..- .+..+++|++|+|..|.|...-- .-+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455566666665532 22345566666666666665432 34556666666666665542110 1234455555555
Q ss_pred cCCCccc
Q 003465 348 MSSNKLE 354 (818)
Q Consensus 348 Ls~n~l~ 354 (818)
|..|.-.
T Consensus 95 L~ENPCc 101 (388)
T KOG2123|consen 95 LDENPCC 101 (388)
T ss_pred hccCCcc
Confidence 5555443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.00022 Score=70.20 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=26.7
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCC
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLN 162 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 162 (818)
+.+.|+++++.+.+. .-..+|+.|++|.||-|+|+.. ..|..+++|++|+|..|.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence 444555555554422 1123455555555555555432 22444555555555555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.00019 Score=74.74 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=50.2
Q ss_pred CCcEEEcCCCCCccc--CCccccCCCcCceecccCcc-cccCCCCCC-CCCCCCcEEECcCCC-CCCCCcc-ccCCCCCC
Q 003465 102 NLESFRIWYSNISGN--IPSEIGALSKLQILDLSHNN-LTGTIPSKL-GNLNNLVELYLSRSN-LNGPIPS-TLGHLTRL 175 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~Ls~n~-l~~~~p~-~l~~l~~L 175 (818)
.|+.|.+.++.-.+. +-..-.+++++++|++.++. +++..-.++ ..+++|++|+|..|. ++...-+ --..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 577777777654322 22344678888888888874 332211122 457888888888743 4332222 23457888
Q ss_pred CEEEccCCC
Q 003465 176 SILDLSSNS 184 (818)
Q Consensus 176 ~~L~L~~n~ 184 (818)
++|+++.+.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 888888774
|
|
| >KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.004 Score=67.40 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=35.0
Q ss_pred ccccccCCCCcccccccccceeccCCC------CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS------SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~------~~~~~~~gt~gy~aPE 736 (818)
|+||..-.+...||.|||+.-...... ...+..+||.-||+||
T Consensus 384 p~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPE 432 (516)
T KOG1033|consen 384 PSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPE 432 (516)
T ss_pred ccccccccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHH
Confidence 789999888899999999987665443 1246778999999999
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.00081 Score=76.63 Aligned_cols=187 Identities=25% Similarity=0.118 Sum_probs=90.2
Q ss_pred CCCcCceecccCcccccC--CCCCCCCCCCCcEEECcCC-CCCCCCc----cccCCCCCCCEEEccCCC-CCCCCccCCC
Q 003465 123 ALSKLQILDLSHNNLTGT--IPSKLGNLNNLVELYLSRS-NLNGPIP----STLGHLTRLSILDLSSNS-LVGPIPFTLG 194 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~L~~n~-l~~~~~~~l~ 194 (818)
.+++|+.|.+..+.-... .-.....+++|+.|+++++ ......+ .....+++|+.|+++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367777777776632211 1233456677777777762 1111111 223445777777777776 4433222222
Q ss_pred -CCCCCcEEEcccCc-CCccC-CccccCCCCCCEEEccCCcCCCC--CCCCCCCCCcceEEEccCCCCCCCCCccccCCC
Q 003465 195 -HLTQLTTLKLFSNQ-INGCI-PLDFGNLRHLKEVDLSGNKLNGP--IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLE 269 (818)
Q Consensus 195 -~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 269 (818)
.+++|++|.+.++. ++... ......+++|++|+++++..... +.....++++|+.|.+....- +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 26778887766665 44221 12234566788888887654310 111223345555544332210 23
Q ss_pred CCcEEEccccccC---CcCCcccCCCCCCCEEEccCCcCCCCC-chhhcCCCCC
Q 003465 270 NLVYLSLNVNNLT---GPIPSTLGRLTSLSDLDLSHNSLFGPI-PPTLSHLTRL 319 (818)
Q Consensus 270 ~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L 319 (818)
.++.+.+...... ......+..++.++.+.+..+...... ...+..++.|
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 3333333332221 111123455677777777766633222 2334445555
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.072 Score=52.86 Aligned_cols=40 Identities=23% Similarity=0.479 Sum_probs=26.6
Q ss_pred cccccc-CCC-CcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILL-NSE-FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL-d~~-~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
..|||+ |.| .++|++|||+.+..... ....--+..|-|||
T Consensus 149 ~eNiLif~~df~rvKlcDFG~t~k~g~t---V~~~~~~~~y~~pe 190 (378)
T KOG1345|consen 149 AENILIFDADFYRVKLCDFGLTRKVGTT---VKYLEYVNNYHAPE 190 (378)
T ss_pred cceEEEecCCccEEEeeecccccccCce---ehhhhhhcccCCcH
Confidence 579998 444 47999999998754321 12233455788898
|
|
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.02 Score=58.39 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=31.6
Q ss_pred ccccccCC-----CCcccccccccceeccCCCCC-------ccccccccceeCCC
Q 003465 694 FNNILLNS-----EFEAFFGNFGVARLLNSDSSN-------RTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~-----~~~~ki~DFGla~~~~~~~~~-------~~~~~gt~gy~aPE 736 (818)
|.|.|+.. ....+|.|||+||...+..+. .....||..||.--
T Consensus 152 PdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSIN 206 (449)
T KOG1165|consen 152 PDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSIN 206 (449)
T ss_pred ccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEee
Confidence 89999964 345789999999988543221 23567999999974
|
|
| >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.022 Score=64.38 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.4
Q ss_pred ccccccCCCC----cccccccccceeccC
Q 003465 694 FNNILLNSEF----EAFFGNFGVARLLNS 718 (818)
Q Consensus 694 ~~NILLd~~~----~~ki~DFGla~~~~~ 718 (818)
|.||+++.++ ..++.|||+++.++.
T Consensus 288 PGNIlv~~~g~~~~~i~llDFGivg~l~~ 316 (537)
T PRK04750 288 PGNIFVSYDPPENPRYIALDFGIVGSLNK 316 (537)
T ss_pred hHHeEEecCCCCCCeEEEEecceEEECCH
Confidence 8999999998 899999999987753
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.0014 Score=74.69 Aligned_cols=10 Identities=40% Similarity=0.404 Sum_probs=5.7
Q ss_pred CCEEecccCc
Q 003465 415 LQSLILSNNS 424 (818)
Q Consensus 415 L~~L~Ls~N~ 424 (818)
++.|+++.+.
T Consensus 403 l~~L~l~~~~ 412 (482)
T KOG1947|consen 403 LRVLNLSDCR 412 (482)
T ss_pred cceEecccCc
Confidence 5556665555
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.0091 Score=35.15 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=10.8
Q ss_pred CCEEECCCCcCccCCccccc
Q 003465 507 LLNVTLSNNSLDGTIPLEMG 526 (818)
Q Consensus 507 L~~L~Ls~N~l~~~~p~~l~ 526 (818)
|+.|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666665 5555444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.029 Score=56.93 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.2
Q ss_pred ccccccCCCCcccccccccceecc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLN 717 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~ 717 (818)
|+||+++ ++++|+.|||.|+...
T Consensus 177 p~NIli~-~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 177 EYNILVH-DGKVVIIDVSQSVELD 199 (237)
T ss_pred hhhEEEE-CCCEEEEEChhhhccC
Confidence 8999999 8899999999988653
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.013 Score=34.49 Aligned_cols=19 Identities=63% Similarity=0.884 Sum_probs=9.8
Q ss_pred CceecccCcccccCCCCCCC
Q 003465 127 LQILDLSHNNLTGTIPSKLG 146 (818)
Q Consensus 127 L~~L~Ls~n~l~~~~p~~~~ 146 (818)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.04 Score=56.77 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=23.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
++|+++|.++.++++||+-........ .. ...+.+|.+||
T Consensus 173 ~~nfll~~~G~v~Lg~F~~~~r~g~~~--~~-~~~~~~~~PPe 212 (288)
T PF14531_consen 173 PENFLLDQDGGVFLGDFSSLVRAGTRY--RC-SEFPVAFTPPE 212 (288)
T ss_dssp GGGEEE-TTS-EEE--GGGEEETTEEE--EG-GGS-TTTS-HH
T ss_pred eeeEEEcCCCCEEEcChHHHeecCcee--ec-cCCCcccCChh
Confidence 899999999999999999776543211 11 23446788898
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.044 Score=53.40 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=30.0
Q ss_pred ccccccCCCC---cccccccccceeccCCCC-------CccccccccceeCCC
Q 003465 694 FNNILLNSEF---EAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~---~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE 736 (818)
|.|.|..-+- ...+.||||||...+..+ .....+||..|..--
T Consensus 139 PdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASin 191 (341)
T KOG1163|consen 139 PDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASIN 191 (341)
T ss_pred ccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhh
Confidence 8999986543 467899999997743211 235678999997653
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.018 Score=60.54 Aligned_cols=34 Identities=12% Similarity=-0.130 Sum_probs=24.0
Q ss_pred HHhhhhhhcccc----CcEEEEEcC----CCcEEEEEecccc
Q 003465 646 ATEDLISDIALE----LDVTAAFTK----HGCLVAEYGSEQG 679 (818)
Q Consensus 646 at~~f~~~~~ig----g~vy~~~~~----~g~~vAvK~~~~~ 679 (818)
..+.|...+.|| ++||+|+.. ....||+|.+...
T Consensus 34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t 75 (418)
T KOG1167|consen 34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT 75 (418)
T ss_pred hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccc
Confidence 344566777777 789999863 4678999965444
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.015 Score=64.48 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=33.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
++||++|.++++|+.|||++|..-..... +||+-|||||
T Consensus 125 ~enilld~~Ghi~~tdfglske~v~~~~~----cgt~eymApE 163 (612)
T KOG0603|consen 125 LENVLLLLEGHIKLTDFGLSKEAVKEKIA----CGTYEYRAPE 163 (612)
T ss_pred ccceeecccCccccCCchhhhHhHhhhhc----ccchhhhhhH
Confidence 78999999999999999999977443222 8999999999
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.051 Score=52.48 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=38.5
Q ss_pred ccccccCCCC-cccccccccceeccCCCCCccccccccceeCCC----CCCcc-hHHHHhcc
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQE-ILSLFSST 749 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~-~l~~~~~~ 749 (818)
|.||++|..- ..|+.|.|||-+...+..-..+ +.+..|--|| .+-+| .++.|+..
T Consensus 160 PhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVR-VASRyfKGPELLVdy~~YDYSLD~WS~G 220 (338)
T KOG0668|consen 160 PHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVR-VASRYFKGPELLVDYQMYDYSLDMWSLG 220 (338)
T ss_pred cceeeechhhceeeeeecchHhhcCCCceeeee-eehhhcCCchheeechhccccHHHHHHH
Confidence 8999999755 6899999999887655433333 3455678899 33444 67777643
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.00051 Score=76.37 Aligned_cols=89 Identities=29% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCCCCEEeccCCcCCCC----CCcccCCCCC-CCEEEccCCcCcccC----CccccCC-CCCCEEecccCcCcccCCc--
Q 003465 364 LTNLIYLDLSLNQLSGP----IPSTFGHLTL-LKFLNLNSNKLNGSI----PSELMNC-FSLQSLILSNNSLTGRIPS-- 431 (818)
Q Consensus 364 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~-L~~L~L~~N~l~~~~----~~~~~~l-~~L~~L~Ls~N~l~~~~p~-- 431 (818)
..++++|.+++|.++.. +...+...+. +..|++.+|.+.+.. ...+..+ ..++.++++.|.|+..-..
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 34455555555554421 1112233333 445666666554321 1122223 4556666666666543322
Q ss_pred --cccCCCCCCEEECcCCcCCcc
Q 003465 432 --EIRNLSYLHELDLSLNFISGM 452 (818)
Q Consensus 432 --~l~~l~~L~~L~Ls~N~l~~~ 452 (818)
.+..++.++++.++.|++...
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccH
Confidence 234455666666666666543
|
|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.18 Score=53.95 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=59.8
Q ss_pred ccccccCCC-----Ccccccccccce--ecc-CCCC------C-ccccccccceeCCC------CCCcchHHHHhc----
Q 003465 694 FNNILLNSE-----FEAFFGNFGVAR--LLN-SDSS------N-RTLIAGTYRYIAPA------KHPQEILSLFSS---- 748 (818)
Q Consensus 694 ~~NILLd~~-----~~~ki~DFGla~--~~~-~~~~------~-~~~~~gt~gy~aPE------~~~~~~l~~~~~---- 748 (818)
|+|++++.. ....+-|||+|| ... .... . ....+||..|.++. ..+.|++..|..
T Consensus 150 p~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~e 229 (322)
T KOG1164|consen 150 PENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLE 229 (322)
T ss_pred HHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHH
Confidence 899999865 568999999998 321 1111 1 23456999999987 333445555532
Q ss_pred ---ccCCCcccccee-cccCCC----cCcc-chHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 749 ---TSDPHITLTYIL-DQRISP----PKKQ-KIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 749 ---~~~~~~~~~~~~-d~~l~~----~~~~-~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+........ ...+.. .... ........+.++...+-..+..++|....+...+...
T Consensus 230 l~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~ 297 (322)
T KOG1164|consen 230 LLKGSLPWEALEMTDLKSKFEKDPRKLLTDRFGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDV 297 (322)
T ss_pred HhcCCCCCccccccchHHHHHHHhhhhccccccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHH
Confidence 211110000000 000000 0000 0011223344455555567888899988888777655
|
|
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.087 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.5
Q ss_pred ccccccCCCCcccccccccceecc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLN 717 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~ 717 (818)
|+||+++ ++.+++.|||.++...
T Consensus 143 p~Nili~-~~~~~liDfg~a~~~~ 165 (187)
T cd05119 143 EYNILVD-DGKVYIIDVPQAVEID 165 (187)
T ss_pred hhhEEEE-CCcEEEEECccccccc
Confidence 8999999 9999999999997553
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.11 Score=61.38 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=23.7
Q ss_pred HHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 779 ASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 779 ~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+-.+.+...+.||++|-++.++++.=.++
T Consensus 267 ~Rnlil~Mi~rdPs~RlSAedyL~~yrG~ 295 (1431)
T KOG1240|consen 267 LRNLILSMIQRDPSKRLSAEDYLQKYRGL 295 (1431)
T ss_pred HHHHHHHHHccCchhccCHHHHHHhhhcc
Confidence 44577889999999999999998875544
|
|
| >COG0661 AarF Predicted unusual protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.099 Score=58.75 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.0
Q ss_pred ccccccCCCCcccccccccceeccC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNS 718 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~ 718 (818)
|.||+++.+++.-.-|||+...++.
T Consensus 293 pGNi~v~~~g~i~~lDfGi~g~l~~ 317 (517)
T COG0661 293 PGNILVRSDGRIVLLDFGIVGRLDP 317 (517)
T ss_pred ccceEEecCCcEEEEcCcceecCCH
Confidence 8999999999888899999887653
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.0062 Score=58.73 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=42.8
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 176 (818)
+..+.....||++.|.+. .+-..|+.++.|..||++.|.+. ..|..++.+..++.+++..|..+ ..|.+++.++.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344445555555555443 12233444555555555555554 34555555555555555555544 4455555555555
Q ss_pred EEEccCCC
Q 003465 177 ILDLSSNS 184 (818)
Q Consensus 177 ~L~L~~n~ 184 (818)
++++.+|.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55555544
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.0016 Score=72.51 Aligned_cols=183 Identities=27% Similarity=0.268 Sum_probs=122.0
Q ss_pred CCcEEEcCCCCCcccC----CccccCCCcCceecccCcccccCC----CCCCCCC-CCCcEEECcCCCCCCC----Cccc
Q 003465 102 NLESFRIWYSNISGNI----PSEIGALSKLQILDLSHNNLTGTI----PSKLGNL-NNLVELYLSRSNLNGP----IPST 168 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l-~~L~~L~Ls~n~l~~~----~p~~ 168 (818)
.+..|.|.+|.+.... -..+...+.|..|++++|.+.+.- -..+... ..|++|++..|.+++. +.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3777888888876443 335567788888999988887431 1222332 5677788888877643 4455
Q ss_pred cCCCCCCCEEEccCCCCCC----CCccCCC----CCCCCcEEEcccCcCCcc----CCccccCCCC-CCEEEccCCcCCC
Q 003465 169 LGHLTRLSILDLSSNSLVG----PIPFTLG----HLTQLTTLKLFSNQINGC----IPLDFGNLRH-LKEVDLSGNKLNG 235 (818)
Q Consensus 169 l~~l~~L~~L~L~~n~l~~----~~~~~l~----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~l~~n~l~~ 235 (818)
+.....|+.++++.|.+.. .++..+. ...++++|++.+|.++.. +...+...+. +.+|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6667888888888887742 1222333 467889999999887631 1122444455 6778999988764
Q ss_pred C----CCCCCCCC-CcceEEEccCCCCCCCCCc----cccCCCCCcEEEccccccCCc
Q 003465 236 P----IASTIGDL-TNLNSLDLSSKQLSGPLPQ----EIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 236 ~----~~~~l~~l-~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~ 284 (818)
. ....+..+ ..++.++++.|.++..-.. .+..++.++++.++.|.+...
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 3 22334444 6789999999998865433 344677899999999988753
|
|
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.16 Score=50.48 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.1
Q ss_pred ccccccCCCCccccccccccee
Q 003465 694 FNNILLNSEFEAFFGNFGVARL 715 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~ 715 (818)
|.|||++ +..++|.|||+++.
T Consensus 123 p~Nil~~-~~~~~liDf~~a~~ 143 (211)
T PRK14879 123 TSNMILS-GGKIYLIDFGLAEF 143 (211)
T ss_pred cccEEEE-CCCEEEEECCcccC
Confidence 8999999 78899999999875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 818 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 7e-31 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 7e-17 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 8e-31 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 7e-17 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 5e-12 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 1e-06 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 1e-06 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 1e-06 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 4e-06 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 6e-06 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 7e-06 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 1e-05 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 1e-05 | ||
| 4b8c_D | 727 | Nuclease Module Of The Yeast Ccr4-Not Complex Lengt | 2e-05 | ||
| 2xot_A | 361 | Crystal Structure Of Neuronal Leucine Rich Repeat P | 4e-04 | ||
| 3e6j_A | 229 | Crystal Structure Of Variable Lymphocyte Receptor ( | 6e-04 | ||
| 1h6u_A | 308 | Internalin H: Crystal Structure Of Fused N-Terminal | 7e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 | Back alignment and structure |
|
| >pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361 | Back alignment and structure |
|
| >pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229 | Back alignment and structure |
|
| >pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 424 bits (1093), Expect = e-137
Identities = 150/502 (29%), Positives = 234/502 (46%), Gaps = 36/502 (7%)
Query: 71 CNLNGSI--------IRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIG 122
++G + + +S N + L+ I + +SG+ I
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSS-NNFSTGIPFL--GDCSALQHLDISGNKLSGDFSRAIS 244
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTL-GHLTRLSILDLS 181
++L++L++S N G IP L +L L L+ + G IP L G L+ LDLS
Sbjct: 245 TCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNGPIAST 240
N G +P G + L +L L SN +G +P+D +R LK +DLS N+ +G + +
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 241 IGDLT-NLNSLDLSSKQLSGPLPQEIG--YLENLVYLSLNVNNLTGPIPSTLGRLTSLSD 297
+ +L+ +L +LDLSS SGP+ + L L L N TG IP TL + L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 298 LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357
L LS N L G IP +L L++L LKL+ N + G IP + ++ LE + + N L G I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 358 PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQS 417
P + + TNL ++ LS N+L+G IP G L L L L++N +G+IP+EL +C SL
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 418 LILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFN 477
L L+ N G IP+ + S ++ NFI+G +
Sbjct: 543 LDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMK----KECHGAGNLL 594
Query: 478 RLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGK 527
G + LS G N ++ + +S N L G IP E+G
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 528 IIFLEYLDLSYNNIPGTVPEFI 549
+ +L L+L +N+I G++P+ +
Sbjct: 655 MPYLFILNLGHNDISGSIPDEV 676
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 422 bits (1088), Expect = e-136
Identities = 161/505 (31%), Positives = 228/505 (45%), Gaps = 40/505 (7%)
Query: 71 CNLNGSI---------IRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEI 121
N + I + +SG N + G + +C L+ I + G IP
Sbjct: 210 NNFSTGIPFLGDCSALQHLDISG-NKLSGDFSRAISTC-TELKLLNISSNQFVGPIPPLP 267
Query: 122 GALSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180
L LQ L L+ N TG IP L G + L L LS ++ G +P G + L L L
Sbjct: 268 --LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 181 SSNSLVGPIPF-TLGHLTQLTTLKLFSNQINGCIPLDFGNLR-HLKEVDLSGNKLNGPIA 238
SSN+ G +P TL + L L L N+ +G +P NL L +DLS N +GPI
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 239 STIGD--LTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
+ L L L + +G +P + LV L L+ N L+G IPS+LG L+ L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGP 356
DL L N L G IP L ++ L TL L N + G IP G+ N NL + +S+N+L G
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 357 IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416
IP IG L NL L LS N SG IP+ G L +L+LN+N NG+IP+ +
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ---- 561
Query: 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSLNFI--SGMTPPQHFKQKHSIRDRLLTYVNH 474
S ++ N + G+ I+N E + N + G+ Q + N
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR------LSTRNPCNI 615
Query: 475 QFNRLSGQIPMTIGGLS----------KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE 524
G T LSG +P EIG+ L + L +N + G+IP E
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 525 MGKIIFLEYLDLSYNNIPGTVPEFI 549
+G + L LDLS N + G +P+ +
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAM 700
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 412 bits (1061), Expect = e-132
Identities = 150/513 (29%), Positives = 236/513 (46%), Gaps = 57/513 (11%)
Query: 58 SNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNI 117
S++ + C + G+ C + + I LS + +
Sbjct: 34 SSNKNPCTFDGVTCR-DDKVTSIDLSSKP-----------------------LNVGFSAV 69
Query: 118 PSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPS--TLGHLTRL 175
S + +L+ L+ L LS++++ G++ +L L LSR++L+GP+ + +LG + L
Sbjct: 70 SSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128
Query: 176 SILDLSSNSLVGPIPFTLG-HLTQLTTLKLFSNQINGCIPLDF---GNLRHLKEVDLSGN 231
L++SSN+L P + G L L L L +N I+G + + LK + +SGN
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Query: 232 KLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGR 291
K++G + + NL LD+SS S +P +G L +L ++ N L+G +
Sbjct: 189 KISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIST 245
Query: 292 LTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSS 350
T L L++S N GPIPP L L L L N+ G IP + G + L +D+S
Sbjct: 246 CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 351 NKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIP-STFGHLTLLKFLNLNSNKLNGSIPSEL 409
N G +P G + L L LS N SG +P T + LK L+L+ N+ +G +P L
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 410 MNC-FSLQSLILSNNSLTGRIPSEIRN--LSYLHELDLSLNFISGMTPPQHFKQKHSIRD 466
N SL +L LS+N+ +G I + + L EL L N +G PP
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE---- 419
Query: 467 RLLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNS 516
L ++ FN LSG IP ++G LSKL G +P E+ L + L N
Sbjct: 420 --LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 517 LDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI 549
L G IP + L ++ LS N + G +P++I
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 402 bits (1036), Expect = e-129
Identities = 144/490 (29%), Positives = 217/490 (44%), Gaps = 50/490 (10%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHN 135
+ +++SG N I G +D NLE + +N S IP +G S LQ LD+S N
Sbjct: 179 ELKHLAISG-NKISGDVDVSRCV---NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233
Query: 136 NLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTL-G 194
L+G + L L +S + GPIP L L L L+ N G IP L G
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSG 291
Query: 195 HLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI-ASTIGDLTNLNSLDLS 253
LT L L N G +P FG+ L+ + LS N +G + T+ + L LDLS
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 254 SKQLSGPLPQEIGYL-ENLVYLSLNVNNLTGPIPSTLGR--LTSLSDLDLSHNSLFGPIP 310
+ SG LP+ + L +L+ L L+ NN +GPI L + +L +L L +N G IP
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 311 PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYL 370
PTLS+ + L +L L N ++G+IP +G+L L + + N LEG IP + + L L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 371 DLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIP 430
L N L+G IPS + T L +++L++N+L G IP + +L L LSNNS +G IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 431 SEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGL 490
+E+ + L LDL+ N +G IP +
Sbjct: 532 AELGDCRSLIWLDLN------------------------------TNLFNGTIPAAMFKQ 561
Query: 491 S------KLSGSVPSEIGNCSGLLNVTLSNN--SLDGTIPLEMGKIIFLEYLDLSYNNIP 542
S ++G I N + N G ++ ++ +++
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 543 GTVPEFINRI 552
G +
Sbjct: 622 GHTSPTFDNN 631
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 400 bits (1029), Expect = e-128
Identities = 148/501 (29%), Positives = 224/501 (44%), Gaps = 59/501 (11%)
Query: 71 CNLNGSI--------IRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIG 122
G I +SL+ N G++ F L + ++ G +P G
Sbjct: 257 NQFVGPIPPLPLKSLQYLSLAE-NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 123 ALSKLQILDLSHNNLTGTIP-SKLGNLNNLVELYLSRSNLNGPIPSTLGHLT-RLSILDL 180
+ S L+ L LS NN +G +P L + L L LS + +G +P +L +L+ L LDL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 181 SSNSLVGPIPFTLGH--LTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIA 238
SSN+ GPI L L L L +N G IP N L + LS N L+G I
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 239 STIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL 298
S++G L+ L L L L G +PQE+ Y++ L L L+ N+LTG IPS L T+L+ +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 299 DLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIP 358
LS+N L G IP + L L LKL +N +G+IP +G+ +L +D+++N G IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 359 LTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNL--NSNKLNGSIPSELMNCFSLQ 416
+ + ++ N ++G + + K + N + G +L +
Sbjct: 556 AAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQF 476
+++ G N + LD+S +
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMS------------------------------Y 641
Query: 477 NRLSGQIPMTIGGLS----------KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMG 526
N LSG IP IG + +SGS+P E+G+ GL + LS+N LDG IP M
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 527 KIIFLEYLDLSYNNIPGTVPE 547
+ L +DLS NN+ G +PE
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 369 bits (950), Expect = e-116
Identities = 138/441 (31%), Positives = 210/441 (47%), Gaps = 27/441 (6%)
Query: 71 CNLNGSI----------IRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSE 120
+ G++ ++LS N G+L L+ + ++ SG +P
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSS-NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 121 IGALS-KLQILDLSHNNLTGTIPSKLGN--LNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177
+ LS L LDLS NN +G I L N L ELYL + G IP TL + + L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI 237
L LS N L G IP +LG L++L LKL+ N + G IP + ++ L+ + L N L G I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 238 ASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSD 297
S + + TNLN + LS+ +L+G +P+ IG LENL L L+ N+ +G IP+ LG SL
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 298 LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN--KLEG 355
LDL+ N G IP + + K+ +N I G + I N + + N + +G
Sbjct: 543 LDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598
Query: 356 PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSL 415
+ L+ +++ G TF + + FL+++ N L+G IP E+ + L
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658
Query: 416 QSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQ 475
L L +N ++G IP E+ +L L+ LDLS N + G P LT ++
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTM-----LTEIDLS 712
Query: 476 FNRLSGQIPMTIGGLSKLSGS 496
N LSG IP +G +
Sbjct: 713 NNNLSGPIP-EMGQFETFPPA 732
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = 3e-94
Identities = 113/502 (22%), Positives = 199/502 (39%), Gaps = 39/502 (7%)
Query: 72 NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILD 131
+L +I ++L+ N +R L NF+ + L S + ++ IS P L L++L+
Sbjct: 22 DLPTNITVLNLTH-NQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79
Query: 132 LSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPF 191
L HN L+ NL EL+L +++ + L LDLS N L
Sbjct: 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Query: 192 TLGHLTQLTTLKLFSNQINGCIPLDFG--NLRHLKEVDLSGNKLNGPIASTIGDLTNLNS 249
T L L L L +N+I + LK+++LS N++ + L
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199
Query: 250 LDLSSKQLSGPLPQEIGY---LENLVYLSLNVNNLTGPIPSTLG--RLTSLSDLDLSHNS 304
L L++ QL L +++ ++ LSL+ + L+ +T + T+L+ LDLS+N+
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 305 LFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLE---------RVDMSSNKLEG 355
L + + L +L L N I + L N+ + +S L
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319
Query: 356 PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSEL----MN 411
+ L L +L++ N + G + F L LK+L+L+++ + + +
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 412 CFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTY 471
L L L+ N ++ L +L LDL LN I Q ++ + +
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN-----IFE 434
Query: 472 VNHQFNRLSGQIPMTIGGLSKLS------------GSVPSEIGNCSGLLNVTLSNNSLDG 519
+ +N+ + + L S PS L + LSNN++
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494
Query: 520 TIPLEMGKIIFLEYLDLSYNNI 541
+ + LE LDL +NN+
Sbjct: 495 INDDMLEGLEKLEILDLQHNNL 516
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = 2e-90
Identities = 99/470 (21%), Positives = 166/470 (35%), Gaps = 32/470 (6%)
Query: 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSR 158
C + E + ++ +P ++ + + +L+L+HN L + + L L +
Sbjct: 2 CTVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58
Query: 159 SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFG 218
+ ++ P L L +L+L N L T T LT L L SN I F
Sbjct: 59 NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 219 NLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLEN--LVYLSL 276
++L +DLS N L+ T L NL L LS+ ++ +E+ N L L L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 277 NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLS---HLTRLTTLKLFSNQINGSI 333
+ N + P + L L L++ L + L T + L L ++Q++ +
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 334 PLGIGNLE--NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
L+ NL +D+S N L + L L Y L N + + L +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 392 KFLNLNSN---------KLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHEL 442
++LNL + L L+ L + +N + G + L L L
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358
Query: 443 DLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKL--------- 493
LS +F S T S+ L +N N++S L L
Sbjct: 359 SLSNSFTSLRTLTNETFV--SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 494 -SGSVP-SEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ E + + LS N + L+ L L +
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 4e-84
Identities = 109/504 (21%), Positives = 181/504 (35%), Gaps = 41/504 (8%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGAL--SKLQILDLS 133
++I + LS NG+ NL+ + + I E+ S L+ L+LS
Sbjct: 122 NLITLDLSH-NGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179
Query: 134 HNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLG---HLTRLSILDLSSNSLVGPIP 190
N + P + L L+L+ L + L T + L LS++ L
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239
Query: 191 FTLGHL--TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN 248
T L T LT L L N +N F L L+ L N + + ++ L N+
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299
Query: 249 SLDL---------SSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLD 299
L+L S L +L+ L +L++ N++ G + L +L L
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359
Query: 300 LSHN--SLFGPIPPTLSHL--TRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG 355
LS++ SL T L + L L L N+I+ L +LE +D+ N++
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419
Query: 356 PIP-LTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG--SIPSELMNC 412
+ L N+ + LS N+ ++F + L+ L L L S PS
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
Query: 413 FSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRL--LT 470
+L L LSNN++ + L L LDL N ++ + + L L
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 471 YVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIF 530
+N + N L +L ++ L N+L+ +
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKI------------ID--LGLNNLNTLPASVFNNQVS 585
Query: 531 LEYLDLSYNNIPGTVPEFINRIMP 554
L+ L+L N I +
Sbjct: 586 LKSLNLQKNLITSVEKKVFGPAFR 609
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 272 bits (697), Expect = 1e-80
Identities = 102/499 (20%), Positives = 174/499 (34%), Gaps = 53/499 (10%)
Query: 74 NGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIG---ALSKLQIL 130
N S+ ++ LS N I+ F L + + ++ ++ A + ++ L
Sbjct: 170 NSSLKKLELSS-NQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227
Query: 131 DLSHNNLTGTIPSKLGNLN--NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGP 188
LS++ L+ T + L NL L LS +NLN + L +L L N++
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287
Query: 189 IPFTLGHLTQLTTLKLFSN---------QINGCIPLDFGNLRHLKEVDLSGNKLNGPIAS 239
+L L + L L + + F L+ L+ +++ N + G ++
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347
Query: 240 TIGDLTNLNSLDLSSKQLSGPLPQEIG----YLENLVYLSLNVNNLTGPIPSTLGRLTSL 295
L NL L LS+ S L L+L N ++ L L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407
Query: 296 SDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354
LDL N + + L + + L N+ + +L+R+ + L+
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 355 G--PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN--------GS 404
P L NL LDLS N ++ L L+ L+L N L G
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527
Query: 405 IPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSI 464
L L L L +N ++L L +DL LN ++ + P F + S
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL-PASVFNNQVS- 585
Query: 465 RDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE 524
L +N Q N ++ G L + + N D T
Sbjct: 586 ----LKSLNLQKNLITSVEKKVFGP-------------AFRNLTELDMRFNPFDCTCESI 628
Query: 525 MGKIIFLEYLDLSYNNIPG 543
F+ +++ ++ NIP
Sbjct: 629 AW---FVNWINETHTNIPE 644
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 3e-67
Identities = 91/401 (22%), Positives = 153/401 (38%), Gaps = 27/401 (6%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHN 135
++ + LS N + + +F+ P LE F + Y+NI + L ++ L+L +
Sbjct: 249 NLTMLDLSY-NNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 136 ---------NLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN--S 184
+L L L L + +++ G + L L L LS++ S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 185 LVGPIPFTLGHL--TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI-ASTI 241
L T L + L L L N+I+ F L HL+ +DL N++ +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 242 GDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG--PIPSTLGRLTSLSDLD 299
L N+ + LS + + +L L L L PS L +L+ LD
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 300 LSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN--------GSIPLGIGNLENLERVDMSSN 351
LS+N++ L L +L L L N + G + L +L +++ SN
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Query: 352 KLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMN 411
+ DL L +DL LN L+ S F + LK LNL N +
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Query: 412 CF-SLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG 451
F +L L + N S +++++E ++ +S
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 5e-55
Identities = 71/308 (23%), Positives = 117/308 (37%), Gaps = 20/308 (6%)
Query: 245 TNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNS 304
+ D S +L+ +P ++ N+ L+L N L + R + L+ LD+ N+
Sbjct: 4 VSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 305 LFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364
+ P L L L L N+++ NL + + SN ++
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSEL--MNCFSLQSLILSN 422
NLI LDLS N LS T L L+ L L++NK+ EL SL+ L LS+
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 423 NSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQ 482
N + P + L L L+ + + + + + ++ ++LS
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS---IRNLSLSNSQLSTT 237
Query: 483 IPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIP 542
T GL + L + LS N+L+ + LEY L YNNI
Sbjct: 238 SNTTFLGL------------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Query: 543 GTVPEFIN 550
++
Sbjct: 286 HLFSHSLH 293
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-18
Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 14/191 (7%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESF--------RIWYSNISGNIPSEIGALSKL 127
++ + LS N I ++ LE R+W G + LS L
Sbjct: 481 NLTILDLSN-NNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG 187
IL+L N +L L + L +NLN S + L L+L N +
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 188 PIPFTLGH-LTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL-NGPIASTIGDLT 245
G LT L + N + + + E + +L + + +T
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYH 658
Query: 246 N--LNSLDLSS 254
+ D SS
Sbjct: 659 GFPVRLFDTSS 669
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 296 bits (759), Expect = 6e-90
Identities = 81/498 (16%), Positives = 159/498 (31%), Gaps = 46/498 (9%)
Query: 79 RISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLT 138
+ ++ + +D F +L I +I K + NN+T
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 139 GTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQ 198
+ + L L + Y+ S + +L
Sbjct: 197 F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKD 250
Query: 199 LTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL--------NGPIASTIGDLTNLNSL 250
LT +++++ +P L ++ ++++ N+ + + + +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310
Query: 251 DLSSKQL-SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPI 309
+ L + P+ + ++ L L N L G +P+ G L+ L+L++N +
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIP 369
Query: 310 PPTLSHLTRLTTLKLFSNQING-SIPLGIGNLENLERVDMSSNKLEG-------PIPLTI 361
++ L N++ ++ + +D S N++ P+ T
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429
Query: 362 GDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG-------SIPSELMNCFS 414
N+ ++LS NQ+S F + L +NL N L N +
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489
Query: 415 LQSLILSNNSLTGRIPSEIR--NLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYV 472
L S+ L N LT + + R L YL +DLS N S P Q +
Sbjct: 490 LTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQR 547
Query: 473 NHQFNRLSGQIPMTIGGLSKLS---------GSVPSEIGNCSGLLNVTLSNNSLDGTIPL 523
+ Q NR + P I L+ V +I + + + +N
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLS 605
Query: 524 EMGKIIFLEYLDLSYNNI 541
+ I L Y+
Sbjct: 606 YVCPYIEAGMYMLFYDKT 623
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 288 bits (739), Expect = 4e-87
Identities = 75/473 (15%), Positives = 154/473 (32%), Gaps = 47/473 (9%)
Query: 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTG----TIPSKLGNLNNLVELYLS 157
+ + SG +P IG L++L++L L + P + + +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 158 RSNLNGPIPSTLG--HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPL 215
R + + L ++S+ I + + T + SN I +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200
Query: 216 DFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLS 275
L L++ + + + N Q + L++L +
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA-----QQYKTEDLKWDNLKDLTDVE 255
Query: 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSL--------FGPIPPTLSHLTRLTTLKLFSN 327
+ +P+ L L + ++++ N ++ + + N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 328 QI-NGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFG 386
+ + + ++ L ++ N+LEG +P G L L+L+ NQ++ + G
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCG 374
Query: 387 HLTLLKFLNLNSNKLNGSIPS--ELMNCFSLQSLILSNNSLTG-------RIPSEIRNLS 437
++ L+ NKL IP+ + + + ++ S N + +
Sbjct: 375 FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433
Query: 438 YLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSV 497
+ ++LS N IS P + F L+ +N N L+ IP
Sbjct: 434 NVSSINLSNNQISK-FPKELFSTGSP-----LSSINLMGNMLTE-IPKNSL------KDE 480
Query: 498 PSEIGNCSGLLNVTLSNNSLDGTIP-LEMGKIIFLEYLDLSYNNIPGTVPEFI 549
N L ++ L N L + +L +DLSYN+ P
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQP 532
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 4e-82
Identities = 63/385 (16%), Positives = 134/385 (34%), Gaps = 36/385 (9%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLT--------GTIPSKLGNL 148
+ +L ++ +P+ + AL ++Q+++++ N +
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 149 NNLVELYLSRSNL-NGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
+ +Y+ +NL P+ ++L + +L +L+ N L G +P G +L +L L N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363
Query: 208 QINGCIPLDFGNLRHLKEVDLSGNKLNG-PIASTIGDLTNLNSLDLSSKQLSG------- 259
QI G ++ + + NKL P ++ ++++D S ++
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Query: 260 PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL-------FGPIPPT 312
PL N+ ++L+ N ++ + LS ++L N L
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483
Query: 313 LSHLTRLTTLKLFSNQINGSIP-LGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYL- 370
+ LT++ L N++ L L +D+S N P + + L
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542
Query: 371 -----DLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSL 425
D N+ P L L + SN + + ++ ++ L + +N
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITP--NISVLDIKDNPN 599
Query: 426 TGRIPSEIRNLSYLHELDLSLNFIS 450
S + L +
Sbjct: 600 ISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 4e-80
Identities = 71/453 (15%), Positives = 151/453 (33%), Gaps = 66/453 (14%)
Query: 110 YSNISGNIPSEIGALSKLQILDLSHNNLTG-------------------TIPSKLGNLNN 150
SN + + L+KL+ + ++ T K NL +
Sbjct: 191 LSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250
Query: 151 LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLV--------GPIPFTLGHLTQLTTL 202
L ++ + +P+ L L + +++++ N + ++ +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310
Query: 203 KLFSNQI-NGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPL 261
+ N + + ++ L ++ N+L G + + G L SL+L+ Q++
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIP 369
Query: 262 PQEIGYLENLVYLSLNVNNLTG-PIPSTLGRLTSLSDLDLSHNSL-------FGPIPPTL 313
G+ E + LS N L P ++ +S +D S+N + F P+ PT
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429
Query: 314 SHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG-------PIPLTIGDLTN 366
++++ L +NQI+ L +++ N L +
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489
Query: 367 LIYLDLSLNQLSG-PIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSL------I 419
L +DL N+L+ L L ++L+ N + P++ +N +L+
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548
Query: 420 LSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRL 479
N P I L +L + N I + + ++ ++ + N
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKITPN--------ISVLDIKDNPN 599
Query: 480 SGQIPMTIGGLSK-----LSGSVPSEIGNCSGL 507
+ + L +I C L
Sbjct: 600 ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 264 bits (676), Expect = 3e-78
Identities = 51/440 (11%), Positives = 127/440 (28%), Gaps = 34/440 (7%)
Query: 131 DLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGP-- 188
+ + L + + L L +G +P +G LT L +L L S+
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 189 --IPFTLGHLTQLTTLKLFSNQINGCIP--LDFGNLRHLKEVDLSGNKLNGPIASTIGDL 244
P + + + L + ++ + I +
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182
Query: 245 TNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNS 304
+ S ++ + + + L L + + + +
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN-----SEYAQ 236
Query: 305 LFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL--------EGP 356
+ +L LT +++++ +P + L ++ ++++ N+ +
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296
Query: 357 IPLTIGDLTNLIYLDLSLNQL-SGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSL 415
+ + + N L + P+ ++ + L L N+L G +P + L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355
Query: 416 QSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQ 475
SL L+ N +T + + L + N + + K ++ ++
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV-----MSAIDFS 410
Query: 476 FNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLD 535
+N + L + ++ LSNN + L ++
Sbjct: 411 YNEIGSVDGKNFDPL-------DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463
Query: 536 LSYNNIPGTVPEFINRIMPA 555
L N + +
Sbjct: 464 LMGNMLTEIPKNSLKDENEN 483
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 226 bits (577), Expect = 3e-64
Identities = 60/344 (17%), Positives = 122/344 (35%), Gaps = 33/344 (9%)
Query: 96 NFSCFPNLESFRIWYSNI-SGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
+ ++ I Y+N+ + + + + + KL +L+ +N L G +P+ G+ L L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASL 358
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGC- 212
L+ + + + G ++ L + N L P F ++ ++ + N+I
Sbjct: 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418
Query: 213 ------IPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG------- 259
+ ++ ++LS N+++ + L+S++L L+
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478
Query: 260 PLPQEIGYLENLVYLSLNVNNLTG-PIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTR 318
+ L + L N LT L L +DLS+NS P + +
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537
Query: 319 LTTLKL------FSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDL 372
L + N+ P GI +L ++ + SN + + I N+ LD+
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDI 594
Query: 373 SLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416
N S L +K ++ C +L
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDK-----TQDIRGCDALD 633
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 2e-35
Identities = 34/278 (12%), Positives = 78/278 (28%), Gaps = 37/278 (13%)
Query: 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGP 356
+ + + +L+ R+T L L +G +P IG L LE + + S+ +
Sbjct: 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120
Query: 357 ----IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL--LKFLNLNSNKLNGSIPSELM 410
P I + L +NS+ SI
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180
Query: 411 NCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLT 470
+ +N++T + + L+ L + + + +
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICE-----------AWE 228
Query: 471 YVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSL--- 517
N ++ + + L L +P+ + + + ++ N
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288
Query: 518 -----DGTIPLEMGKIIFLEYLDLSYNNIP-GTVPEFI 549
D + ++ + + YNN+ V +
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 6e-16
Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 14/150 (9%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQIL----- 130
+ I L N + D F + P L + Y++ S P++ S L+
Sbjct: 489 LLTSIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546
Query: 131 -DLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPI 189
D N P + +L +L + +++ + + +S+LD+ N +
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISID 603
Query: 190 PFTLGHLTQLTTLKLFSNQ---INGCIPLD 216
+ + LF ++ I GC LD
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 270 bits (692), Expect = 9e-81
Identities = 113/531 (21%), Positives = 185/531 (34%), Gaps = 60/531 (11%)
Query: 72 NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILD 131
NL S + LS N +R L ++F FP L+ + I +LS L L
Sbjct: 25 NLPFSTKNLDLSF-NPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82
Query: 132 LSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIP 190
L+ N + L++L +L +NL +GHL L L+++ N + +P
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 191 FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK----EVDLSGNKLNGPIASTIGDLTN 246
+LT L L L SN+I D L + +DLS N +N ++
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201
Query: 247 LNSLDLSSKQLSGPLPQEIGY-LENLVYLSL------NVNNLTGPIPSTLGRLTSLSDLD 299
L+ L L + S + + L L L N NL S L L +L+ +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 300 LSHNSL---FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE-- 354
L I + LT +++ L S I + +++ + K
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKFGQF 319
Query: 355 -----------------GPIPLTIGDLTNLIYLDLSLNQLS--GPIPSTFGHLTLLKFLN 395
G + DL +L +LDLS N LS G + T LK+L+
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 396 LNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTP 454
L+ N + + S + L+ L +++L + +L L LD+S
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-F 437
Query: 455 PQHFKQKHSIRDRLLTYVNHQFNRLSGQI-PMTIGGLSKL----------SGSVPSEIGN 503
F S L + N P L L P+ +
Sbjct: 438 NGIFNGLSS-----LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 504 CSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMP 554
S L + +S+N+ + L+ LD S N+I + + +
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 7e-72
Identities = 96/482 (19%), Positives = 160/482 (33%), Gaps = 60/482 (12%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
IP + + LDLS N L + L L LSR + L+ LS
Sbjct: 22 IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG- 235
L L+ N + L+ L L + G+L+ LKE++++ N +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENL----VYLSLNVNNLTGPIPSTLGR 291
+ +LTNL LDLSS ++ ++ L + + L L++N + P +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-K 198
Query: 292 LTSLSDLDLSHNSLFGPIPPT-LSHLTRLTTLKLFSNQINGSIPLG---IGNLENLERVD 347
L L L +N + T + L L +L + L LE L +
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 348 MSSNKLE------GPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401
+ +L I LTN+ L + ++ + L L + K
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKF 316
Query: 402 N-------------------GSIPSELMNCFSLQSLILSNNSLT--GRIPSEIRNLSYLH 440
G ++ SL+ L LS N L+ G + L
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 441 ELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTI-GGLSKL------ 493
LDLS N + M +F L +++ Q + L ++ L L
Sbjct: 377 YLDLSFNGVITM--SSNFLGLEQ-----LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 494 ----SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE-MGKIIFLEYLDLSYNNIPGTVPEF 548
+ S L + ++ NS + ++ L +LDLS + P
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 549 IN 550
N
Sbjct: 490 FN 491
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 2e-68
Identities = 90/467 (19%), Positives = 155/467 (33%), Gaps = 47/467 (10%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQI----LD 131
++ ++++ N I+ FS NLE + + I +++ L ++ + LD
Sbjct: 125 TLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 132 LSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGH-LTRLSILDLSSNSLVGPI- 189
LS N + P + L +L L + + + T L L + L
Sbjct: 184 LSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242
Query: 190 --PFTLGHLTQLTTLKLFSNQIN------GCIPLDFGNLRHLKEVDLSGNKLNGPIASTI 241
F L L L + ++ I F L ++ L + +
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302
Query: 242 GDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLS 301
L+L + + ++ L L + G + L SL LDLS
Sbjct: 303 --NFGWQHLELVNCKFGQFPTLKLKSL-----KRLTFTSNKGGNAFSEVDLPSLEFLDLS 355
Query: 302 HNSL--FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPL 359
N L G + T L L L N + + LE LE +D + L+
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 360 TI-GDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQS 417
++ L NLIYLD+S F L+ L+ L + N + + +L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 418 LILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFN 477
L LS L P+ +LS L L++S N +K +S L +++ N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNS-----LQVLDYSLN 528
Query: 478 RLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE 524
+ + S L + L+ N T +
Sbjct: 529 HIMTSKKQELQHF-------------PSSLAFLNLTQNDFACTCEHQ 562
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 2e-64
Identities = 104/439 (23%), Positives = 160/439 (36%), Gaps = 30/439 (6%)
Query: 71 CNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSE-IGALSKLQI 129
+ + + LS N + + F L + + S N+ I L+ L++
Sbjct: 173 HQMPLLNLSLDLSL-NPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229
Query: 130 LDLS------HNNLTGTIPSKLGNLNNLVELYLSRSNLN---GPIPSTLGHLTRLSILDL 180
L NL S L L NL + L+ I LT +S L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289
Query: 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIAST 240
S ++ F+ + L+L + + L+ LK + + NK +
Sbjct: 290 VSVTIERVKDFS--YNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAF--S 342
Query: 241 IGDLTNLNSLDLSSKQLS--GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL 298
DL +L LDLS LS G Q +L YL L+ N + + S L L L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401
Query: 299 DLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357
D H++L L L L + + L +LE + M+ N +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 358 -PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416
P +L NL +LDLS QL P+ F L+ L+ LN++ N SLQ
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 417 SLILSNNSLTGRIPSEIRNL-SYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQ 475
L S N + E+++ S L L+L+ N + Q F Q I+D+ V
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW--IKDQRQLLVEV- 578
Query: 476 FNRLSGQIPMTIGGLSKLS 494
R+ P G+ LS
Sbjct: 579 -ERMECATPSDKQGMPVLS 596
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-33
Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 18/216 (8%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
IP + + + +D+S N L + L LDLS ++ + L+ L
Sbjct: 21 KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 392 KFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG 451
L L N + SLQ L+ +L I +L L EL+++ N I
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 452 MTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVT 511
P++F + L +++ N++ + L ++ L++
Sbjct: 139 FKLPEYFSNLTN-----LEHLDLSSNKIQSIYCTDLRVLHQMP----------LLNLSLD 183
Query: 512 LSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547
LS N ++ I K I L L L N V +
Sbjct: 184 LSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMK 218
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 1e-78
Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 15/293 (5%)
Query: 50 WNNSREKASNHSDHCKWAGIVCNLNGSIIR---ISLSGVNGIRGKLDQFNFSC-FPNLES 105
W + + W G++C+ + R + LSG + + P L
Sbjct: 27 WLPT-----TDCCNRTWLGVLCDTDTQTYRVNNLDLSG-LNLPKPYPIPSSLANLPYLNF 80
Query: 106 FRIWYSN-ISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGP 164
I N + G IP I L++L L ++H N++G IP L + LV L S + L+G
Sbjct: 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140
Query: 165 IPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT-LKLFSNQINGCIPLDFGNLRHL 223
+P ++ L L + N + G IP + G ++L T + + N++ G IP F NL +L
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NL 199
Query: 224 KEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG 283
VDLS N L G + G N + L+ L+ L ++G +NL L L N + G
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258
Query: 284 PIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLG 336
+P L +L L L++S N+L G I P +L R +N+ PL
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLP 310
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 1e-77
Identities = 88/337 (26%), Positives = 141/337 (41%), Gaps = 55/337 (16%)
Query: 212 CIPLDFGNLRHL----KEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG--PLPQEI 265
I D GN L D G + T +N+LDLS L P+P +
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 266 GYLENLVYLSL-NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKL 324
L L +L + +NNL GPIP + +LT L L ++H ++ G IP LS + L TL
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 325 FSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLI-YLDLSLNQLSGPIPS 383
N ++G++P I +L NL + N++ G IP + G + L + +S N+L+G IP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 384 TFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELD 443
TF +L L F++L+ N L G + + Q + L+ NSL + + L+ LD
Sbjct: 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLD 250
Query: 444 LSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGN 503
L N ++ G++P +
Sbjct: 251 LRNN--------------------------------------------RIYGTLPQGLTQ 266
Query: 504 CSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNN 540
L ++ +S N+L G IP + G + + + N
Sbjct: 267 LKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 247 bits (634), Expect = 8e-76
Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 54/317 (17%)
Query: 239 STIGDLTNLNS----LDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG--PIPSTLGRL 292
+G+ T L+S D ++ G L + L L+ NL PIPS+L L
Sbjct: 16 KDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL 75
Query: 293 TSLSDLDLSH-NSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN 351
L+ L + N+L GPIPP ++ LT+L L + ++G+IP + ++ L +D S N
Sbjct: 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 352 KLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLT-LLKFLNLNSNKLNGSIPSELM 410
L G +P +I L NL+ + N++SG IP ++G + L + ++ N+L G IP
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 411 NCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLT 470
N +L + LS N L G + ++ L+
Sbjct: 196 NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA------------------------- 229
Query: 471 YVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIF 530
N L+ + ++G L + L NN + GT+P + ++ F
Sbjct: 230 -----KNSLAFDLG---------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 531 LEYLDLSYNNIPGTVPE 547
L L++S+NN+ G +P+
Sbjct: 270 LHSLNVSFNNLCGEIPQ 286
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 2e-59
Identities = 62/274 (22%), Positives = 103/274 (37%), Gaps = 53/274 (19%)
Query: 285 IPSTLGRLTSLSD----LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGS--IPLGIG 338
I LG T+LS D + + G + T + R+ L L + IP +
Sbjct: 14 IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73
Query: 339 NLENLERVDMSS-NKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLN 397
NL L + + N L GPIP I LT L YL ++ +SG IP + L L+ +
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 398 SNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHE-LDLSLNFISGMTPPQ 456
N L+G++P + + +L + N ++G IP + S L + +S N
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--------- 184
Query: 457 HFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNS 516
+L+G +P N + L V LS N
Sbjct: 185 -----------------------------------RLTGKIPPTFANLN-LAFVDLSRNM 208
Query: 517 LDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFIN 550
L+G + G + + L+ N++ + +
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 4e-75
Identities = 97/583 (16%), Positives = 191/583 (32%), Gaps = 93/583 (15%)
Query: 42 EALLNTGWWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFP 101
+++ WN ++E G+ + NG + +SL+G G +G++
Sbjct: 294 NNTIHSLNWNFNKE----LDMWGDQPGVDLDNNGRVTGLSLAG-FGAKGRVPD-AIGQLT 347
Query: 102 NLESFRIWYSNISGNIPS-------------------------EIGALSKLQILDLSHNN 136
L+ + + + + +L + DL +
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407
Query: 137 LTG---TIPSKLGNLNNLVELYLSR-SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFT 192
+ P K + +L + + +N I + LT+L I+ +++
Sbjct: 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV 467
Query: 193 LGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDL 252
K + N L + NL+ L +V+L + + DL L SL++
Sbjct: 468 DWEDANSDYAKQYEN-----EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522
Query: 253 SSKQLSGP---------LPQEIGYLENLVYLSLNVNNLTG-PIPSTLGRLTSLSDLDLSH 302
+ + L + + + NNL P ++L ++ L LD H
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582
Query: 303 NSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG-NLENLERVDMSSNKLEG-PIPLT 360
N + +LT LKL NQI IP + +E + S NKL+ P
Sbjct: 583 NKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639
Query: 361 IGDLTNLIYLDLSLNQLSGPIPSTFGHLTL-----LKFLNLNSNKLNGSIPSELMNCFSL 415
+ + +D S N++ + + + L+ N++ +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
Query: 416 QSLILSNNSLT-------GRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRL 468
++ILSNN +T +N L +DL N ++ ++
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY----- 754
Query: 469 LTYVNHQFNRLSGQIPMTIGGLSKL----------------SGSVPSEIGNCSGLLNVTL 512
L+ ++ +N S P S+L P+ I C L+ + +
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813
Query: 513 SNNSLDGTIPLEMGKIIFLEYLDLSYNNI-PGTVPEFINRIMP 554
+N + + ++ L LD++ N V I
Sbjct: 814 GSNDI-RKVDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEA 853
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 3e-73
Identities = 74/466 (15%), Positives = 149/466 (31%), Gaps = 69/466 (14%)
Query: 111 SNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLG 170
+N I I L+KLQI+ +++ T + + + + +
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIA-----VDWEDANSDYAKQYENEELSWS 488
Query: 171 HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQING---------CIPLDFGNLR 221
+L L+ ++L + + +P L L +L +L + N+ + D
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 222 HLKEVDLSGNKLNG-PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN 280
++ + N L P ++++ + L LD ++ + G L L L+ N
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQ 606
Query: 281 LTGPIPSTLGRLTSLSDLDLSHNSLFG-PIPPTLSHLTRLTTLKLFSNQI-----NGSIP 334
+ + L SHN L P + + ++ N+I N S
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666
Query: 335 LGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLS-------GPIPSTFGH 387
+ N V +S N+++ + + + LS N ++ P + +
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726
Query: 388 LTLLKFLNLNSNKLNGSIPSELM--NCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLS 445
LL ++L NKL S+ + L ++ +S N + P++ N S L +
Sbjct: 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784
Query: 446 LNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLS---------GS 496
+ NR+ Q P I L
Sbjct: 785 HQRDAE------------------------GNRILRQWPTGITTCPSLIQLQIGSNDIRK 820
Query: 497 VPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIP 542
V ++ L + +++N + I L Y+
Sbjct: 821 VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 1e-69
Identities = 74/416 (17%), Positives = 138/416 (33%), Gaps = 45/416 (10%)
Query: 71 CNLNGSIIRISLSGVNGIRGKLDQFN---FSCFPNLESFRIWYSNISGNIPSEIGALSKL 127
I + N K + +S +L ++ +P + L +L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517
Query: 128 QILDLSHNNLTG---------TIPSKLGNLNNLVELYLSRSNLNG-PIPSTLGHLTRLSI 177
Q L+++ N + + Y+ +NL P ++L + +L +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNG- 235
LD N + F G +LT LKL NQI IP D ++ + S NKL
Sbjct: 578 LDCVHNKVRHLEAF--GTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYI 634
Query: 236 PIASTIGDLTNLNSLDLSSKQLSG-----PLPQEIGYLENLVYLSLNVNNLTGPIPSTLG 290
P + + S+D S ++ + N ++L+ N +
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694
Query: 291 RLTSLSDLDLSHNSL-------FGPIPPTLSHLTRLTTLKLFSNQINGSIP--LGIGNLE 341
+ +S + LS+N + P + LTT+ L N++ S+ L
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753
Query: 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSL------NQLSGPIPSTFGHLTLLKFLN 395
L +D+S N P + + L + N++ P+ L L
Sbjct: 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812
Query: 396 LNSNKLNGSIPSELMNCFSLQSLILSNNSLT-GRIPSEIRNLSYLHELDLSLNFIS 450
+ SN + + +L L L +++N + S + L +
Sbjct: 813 IGSNDIR-KVDEKLTP--QLYILDIADNPNISIDVTSVCPYIE-AGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 2e-53
Identities = 60/329 (18%), Positives = 119/329 (36%), Gaps = 31/329 (9%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSE--IGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
P ++ F + Y+N+ P+ + + KL +LD HN + + + G L +L
Sbjct: 544 EDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDL 600
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQI---- 209
L + + ++ L S N L P F + + ++ N+I
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660
Query: 210 -NGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS-------GPL 261
N +D + V LS N++ + ++++ LS+ ++ P
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720
Query: 262 PQEIGYLENLVYLSLNVNNLTG-PIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLT 320
L + L N LT L LS++D+S+N P + ++L
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK 779
Query: 321 TLKL------FSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSL 374
+ N+I P GI +L ++ + SN + + + L LD++
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIAD 836
Query: 375 NQL-SGPIPSTFGHLTL-LKFLNLNSNKL 401
N S + S ++ + L + +
Sbjct: 837 NPNISIDVTSVCPYIEAGMYVLLYDKTQD 865
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 1e-24
Identities = 40/290 (13%), Positives = 83/290 (28%), Gaps = 33/290 (11%)
Query: 291 RLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSS 350
+LT +++ + I + L + + + N +
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKEL 308
Query: 351 NKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELM 410
+ + + + + L L+ G +P G LT LK L+ ++ S
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 411 NCFSLQSLILSNNSLTGRIPSE-IRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLL 469
+ + + + L+ DL + I+ P +K S
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR-NPEMKPIKKDSRISLKD 427
Query: 470 TYVNHQFNRLSGQIPMTIGGLSKL-----------------------------SGSVPSE 500
T + + NR++ I I L+KL +
Sbjct: 428 TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486
Query: 501 IGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFIN 550
N L +V L N +P + + L+ L+++ N +
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 36/310 (11%), Positives = 83/310 (26%), Gaps = 31/310 (10%)
Query: 242 GDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLS 301
T L + ++ K+ S + + + + + +P+ ++ + + +
Sbjct: 168 RVTTELKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCDSAVWLPAGTYQVVAYT----T 223
Query: 302 HNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTI 361
++ + R + + N++ V + + I
Sbjct: 224 YSQSGIKRSELETQSVRGESFTVIDNKLTKD-----------ANVPIQLKETAEYIKDYK 272
Query: 362 GDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILS 421
LD + + H F N + +L N + L L+
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLA 331
Query: 422 NNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSG 481
GR+P I L+ L L + + + + +R+
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL------FGDEELTPDMSEERKHRIRM 385
Query: 482 QIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ N S LL ++ N I + + + N I
Sbjct: 386 HYKKMFLD--------YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 542 PGTVPEFINR 551
+ + I R
Sbjct: 438 -TFISKAIQR 446
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 11/91 (12%), Positives = 29/91 (31%)
Query: 489 GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEF 548
L ++ N + ++L+ G +P +G++ L+ L ++ + F
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366
Query: 549 INRIMPADLVPMINFSISPTPSPASPQQEPN 579
+ + D+ I +
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 1e-72
Identities = 84/460 (18%), Positives = 155/460 (33%), Gaps = 30/460 (6%)
Query: 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRS 159
+ E ++ + + L L LDL+ + + + L L L+ +
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 160 NLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGN 219
L + L L L + L + L +L L SN I+
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 220 LRHLKEVDLSGNKLNGPIASTIGDLTNLN--SLDLSSKQLSGPLPQEIGYLENLVYLSLN 277
LK +D N ++ + L SL+L+ ++G + L+
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFG 210
Query: 278 VNNLTGPIPSTLG--RLTSLSDLDLSHNSLFGPIPPTLSHLTR--LTTLKLFSNQINGSI 333
I L + SL P L + ++ L +
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270
Query: 334 PLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKF 393
L+ +D+++ L +P + L+ L L LS N+ + + L
Sbjct: 271 SNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329
Query: 394 LNLNSNKLNGSIPSE-LMNCFSLQSLILSNNSLT--GRIPSEIRNLSYLHELDLSLNFIS 450
L++ N + + L N +L+ L LS++ + ++RNLS+L L+LS N
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 451 GMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNV 510
+ + FK+ L ++ F RL + S N L +
Sbjct: 390 SL-KTEAFKECPQ-----LELLDLAFTRLKVKDA-------------QSPFQNLHLLKVL 430
Query: 511 TLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFIN 550
LS++ LD + + L++L+L N+ P + N
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 6e-65
Identities = 93/483 (19%), Positives = 168/483 (34%), Gaps = 42/483 (8%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQI--LDLS 133
++ + L N I + L+ + I ++ +L + L+L+
Sbjct: 130 TLESLYLGS-NHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187
Query: 134 HNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGH--LTRLSILDLSSNSLVGPIPF 191
N++ I + L + I L + + L + P
Sbjct: 188 GNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246
Query: 192 TLGHL--TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNS 249
L + ++ L + F L+E+DL+ L+ + S + L+ L
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKK 305
Query: 250 LDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPS-TLGRLTSLSDLDLSHNSL--F 306
L LS+ + +L +LS+ N + + L L +L +LDLSH+ +
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 307 GPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTI-GDLT 365
L +L+ L +L L N+ LE +D++ +L+ + +L
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425
Query: 366 NLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI---PSELMNCFSLQSLILSN 422
L L+LS + L F L L+ LNL N + L L+ L+LS
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485
Query: 423 NSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQ 482
L+ +L ++ +DLS N ++ + I Y+N N +S
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSS-SIEALSHLKGI------YLNLASNHISII 538
Query: 483 IPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIP 542
+P + LS+ + L N LD T I FLE+ + +
Sbjct: 539 LPSLLPILSQQR--------------TINLRQNPLDCTCSN----IYFLEWYKENMQKLE 580
Query: 543 GTV 545
T
Sbjct: 581 DTE 583
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-43
Identities = 52/305 (17%), Positives = 103/305 (33%), Gaps = 17/305 (5%)
Query: 248 NSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG 307
+ + + L+ +P + + L + N L +T RL +L+ LDL+ ++
Sbjct: 15 KTYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 308 PIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNL 367
T RL TL L +N + + + L+ + + + + + L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 368 IYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ--SLILSNNSL 425
L L N +S LK L+ +N ++ ++ + SL L+ N +
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191
Query: 426 TGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPM 485
G I + + L+ + K L T+ + +S +
Sbjct: 192 AG-IEPGAFDSAVFQSLNFGGTQNLL-VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249
Query: 486 TIGGLS---------KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDL 536
+ +S + SGL + L+ L +P + + L+ L L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVL 308
Query: 537 SYNNI 541
S N
Sbjct: 309 SANKF 313
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 6e-70
Identities = 100/497 (20%), Positives = 174/497 (35%), Gaps = 43/497 (8%)
Query: 72 NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILD 131
++ S I LS N ++ L ++FS F L+ + I L L L
Sbjct: 29 DIPSSTKNIDLSF-NPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86
Query: 132 LSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIP 190
L+ N + P L +L L + L +G L L L+++ N + +P
Sbjct: 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146
Query: 191 FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK----EVDLSGNKLNGPIASTIGDLTN 246
+LT L + L N I D LR +D+S N ++ I
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIK 205
Query: 247 LNSLDLSSKQLSGPLPQEIGY-LENLVYLSL------NVNNLTGPIPSTLGRLTSLS--D 297
L+ L L S + + L L L + NL PS + L ++ +
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265
Query: 298 LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357
L++ + F L ++ + L I + + + + +L+
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV--PKHFKWQSLSIIRCQLKQ-- 321
Query: 358 PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPS--ELMNCFSL 415
DL L L L++N+ S I L L +L+L+ N L+ S + SL
Sbjct: 322 -FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378
Query: 416 QSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQ 475
+ L LS N + + L L LD + + +T F L Y++
Sbjct: 379 RHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK-----LLYLDIS 432
Query: 476 FNRLSGQIPMTIGGLSKL-----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE 524
+ GL+ L ++ + N + L + LS L+
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
Query: 525 MGKIIFLEYLDLSYNNI 541
+ L+ L++S+NN+
Sbjct: 493 FDTLHRLQLLNMSHNNL 509
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 1e-63
Identities = 93/488 (19%), Positives = 168/488 (34%), Gaps = 59/488 (12%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
+ +L + + + I P L+ L+ L L +G L L +L +
Sbjct: 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135
Query: 157 SRSNLNG-PIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLT----TLKLFSNQING 211
+ + ++ +P+ +LT L +DLS N + L L + +L + N I+
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195
Query: 212 CIPLDFGNLRHLKEVDLSGNKLNGPIAST-IGDLTNLNSLDLSSKQLSG------PLPQE 264
F + L E+ L GN + I T + +L L+ L + P
Sbjct: 196 IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254
Query: 265 IGYLENLVY--LSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTL 322
+ L ++ L N L ++S + L+ S+ + + +L
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSL 312
Query: 323 KLFSNQIN-------------------GSIPLGIGNLENLERVDMSSNKLE--GPIPLTI 361
+ Q+ GSI L +L +D+S N L G +
Sbjct: 313 SIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372
Query: 362 GDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP-SELMNCFSLQSLIL 420
+L +LDLS N + + F L L+ L+ + L S ++ L L +
Sbjct: 373 LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431
Query: 421 SNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLS 480
S + L+ L+ L ++ N T F + LT+++ +L
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN-----LTFLDLSKCQLE 486
Query: 481 GQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNN 540
L +L LLN +S+N+L ++ L LD S+N
Sbjct: 487 QISWGVFDTLHRLQ------------LLN--MSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532
Query: 541 IPGTVPEF 548
I +
Sbjct: 533 IETSKGIL 540
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 1e-60
Identities = 87/458 (18%), Positives = 160/458 (34%), Gaps = 40/458 (8%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P +I S + +DLS N L N + L L LSR + L LS
Sbjct: 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG- 235
L L+ N + P + LT L L ++ G L LK+++++ N ++
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143
Query: 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENL----VYLSLNVNNLTGPIPSTLGR 291
+ + +LTNL +DLS + ++ +L + L +++N + I +
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQ 202
Query: 292 LTSLSDLDLSHNSLFGPIPPT-LSHLTRLTTLKLFSNQINGSIPLGIGNLENLERV---- 346
L +L L N I T L +L L +L + L I +E +
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262
Query: 347 ----DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN 402
++ + L N+ + L+ + + L++ +L
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQLK 320
Query: 403 GSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKH 462
P+ + L+SL L+ N + I + L L LDLS N +S +
Sbjct: 321 -QFPTL--DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFS-GCCSY---S 371
Query: 463 SIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSG-----------SVPSEIGNCSGLLNVT 511
+ L +++ FN + GL +L + S + LL +
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430
Query: 512 LSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI 549
+S + + L L ++ N+ +
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 6e-57
Identities = 81/375 (21%), Positives = 132/375 (35%), Gaps = 23/375 (6%)
Query: 91 KLDQFNFSCF--PNLESFRIWYSNISGNIPSE-IGALSKLQILDLSHN------NLTGTI 141
+D F L + + S NI + L+ L + L NL
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251
Query: 142 PSKLGNLNNLV--ELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199
PS + L ++ E L+ +N L +S + L+ S+ +
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP--KHFKW 309
Query: 200 TTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS- 258
+L + Q+ +L LK + L+ NK + I+ L +L+ LDLS LS
Sbjct: 310 QSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSF 364
Query: 259 -GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHL 316
G +L +L L+ N + + L L LD H++L L
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423
Query: 317 TRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIP-LTIGDLTNLIYLDLSLN 375
+L L + L +L + M+ N + + TNL +LDLS
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Query: 376 QLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRN 435
QL F L L+ LN++ N L S +SL +L S N +
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543
Query: 436 LSYLHELDLSLNFIS 450
L +L+ N ++
Sbjct: 544 PKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 5e-55
Identities = 99/485 (20%), Positives = 163/485 (33%), Gaps = 51/485 (10%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQI----LD 131
++ +++++ N I FS NL + Y+ I +++ L + LD
Sbjct: 129 TLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Query: 132 LSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGH-LTRLSILDLSSNSLVG--- 187
+S N + I + L EL L + + I T L L + L
Sbjct: 188 MSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246
Query: 188 ---PIPFTLGHLTQLTT--LKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIG 242
P + L +T +L + F L ++ + L+G + +
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVP 304
Query: 243 DLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSH 302
SL + QL + L L L+L +N + I L SLS LDLS
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSR 359
Query: 303 NSL--FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPL- 359
N+L G + L L L N + LE L+ +D + L+
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418
Query: 360 TIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQSL 418
L L+YLD+S F LT L L + N + S N +L L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478
Query: 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNR 478
LS L L L L++S N + + H+ Q +S L+ ++ FNR
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYS-----LSTLDCSFNR 532
Query: 479 LSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSY 538
+ + L+ L+NNS+ FL+++
Sbjct: 533 IETSKGILQHFPKSLA--------------FFNLTNNSVACICEH----QKFLQWVKEQK 574
Query: 539 NNIPG 543
+
Sbjct: 575 QFLVN 579
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 4e-54
Identities = 89/484 (18%), Positives = 159/484 (32%), Gaps = 49/484 (10%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISG-NIPSEIGALSKLQILDLSH 134
S+ + + L+ F L+ + ++ I +P+ L+ L +DLS+
Sbjct: 105 SLENLVAVE-TKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162
Query: 135 NNLTGTIPSKLGNLNNL----VELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP 190
N + + L L + L +S + ++ I +L L L N I
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIM 221
Query: 191 -FTLGHLTQLTTLKLFSNQINGCIPLD------FGNLRHL--KEVDLSGNKLNGPIASTI 241
L +L L +L + L+ L + E L+
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281
Query: 242 GDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLS 301
L N++++ L+ + +++ LS+ L L L SL L+
Sbjct: 282 HCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLT 336
Query: 302 HNSLFGPIPPTLSHLTRLTTLKLFSNQIN--GSIPLGIGNLENLERVDMSSNKLEGPIPL 359
N I L L+ L L N ++ G +L +D+S N +
Sbjct: 337 MNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA 393
Query: 360 TIGDLTNLIYLDLSLNQLSGPIP-STFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSL 418
L L +LD + L S F L L +L+++ + SL +L
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453
Query: 419 ILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFN 477
++ NS S + N + L LDLS + + F H L +N N
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-SWGVFDTLHR-----LQLLNMSHN 507
Query: 478 RLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLS 537
L L LS + S N ++ + + L + +L+
Sbjct: 508 NLLFLDSSHYNQLYSLS--------------TLDCSFNRIETSKGILQHFPKSLAFFNLT 553
Query: 538 YNNI 541
N++
Sbjct: 554 NNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 4e-53
Identities = 86/452 (19%), Positives = 145/452 (32%), Gaps = 72/452 (15%)
Query: 115 GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTR 174
G++ I + + L+ +P + + + + LS + L + + +
Sbjct: 2 GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE 57
Query: 175 LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
L LDLS + L L+ L L N I P F L L+ + KL
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 235 GPIASTIGDLTNLNSLDLSSKQLSG-PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLT 293
+ IG L L L+++ + LP L NLV++ L+ N + + L L
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Query: 294 SLSD----LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIP-LGIGNLENLERVDM 348
LD+S N + I +L L L N + +I + NL L +
Sbjct: 178 ENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236
Query: 349 SSNKLEGPIPLTIGDLT--------NLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNK 400
+ + L I + + + L+ F L + ++L
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296
Query: 401 LNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQ 460
+ ++ F QSL + L P+ +L +L L L++N S
Sbjct: 297 IKY--LEDVPKHFKWQSLSIIRCQLKQ-FPTL--DLPFLKSLTLTMNKGS---------- 341
Query: 461 KHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGT 520
I L LS L+ LS N+L +
Sbjct: 342 ----------------------ISFKKVALPSLS------------YLD--LSRNALSFS 365
Query: 521 IP--LEMGKIIFLEYLDLSYNNIPGTVPEFIN 550
L +LDLS+N F+
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-17
Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 4/179 (2%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSH 134
++ + +S + F +L + ++ ++ N S + + L LDLS
Sbjct: 425 KLLYLDISY-TNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482
Query: 135 NNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLG 194
L L+ L L +S +NL S L LS LD S N +
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542
Query: 195 HLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLS 253
L L +N + CI L+ +KE + +T ++ LD +
Sbjct: 543 FPKSLAFFNLTNNSVA-CICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFN 600
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 4e-64
Identities = 117/449 (26%), Positives = 191/449 (42%), Gaps = 53/449 (11%)
Query: 119 SEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178
AL++ L N+T T+ +L+ + L R + + +L L+ +
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQI 73
Query: 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIA 238
+ S+N L P L +LT+L + + +NQI PL NL +L + L N++
Sbjct: 74 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDI-- 127
Query: 239 STIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL 298
+ +LTNLN L+LSS +S + L +L LS N +T P L LT+L L
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERL 182
Query: 299 DLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIP 358
D+S N + L+ LT L +L +NQI+ PL G L NL+ + ++ N+L+
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKDIGT 238
Query: 359 LTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSL 418
L LTNL LDL+ NQ+S P LT L L L +N+++ P L +L +L
Sbjct: 239 L--ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNR 478
L+ N L S I NL L L L N IS ++P + L + N+
Sbjct: 293 ELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTK--------LQRLFFYNNK 342
Query: 479 LSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSY 538
+S S + N + + ++ +N + PL + + L L+
Sbjct: 343 VSD----------------VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLND 384
Query: 539 NNIPGTVPEFINRIMPADLVPMINFSISP 567
+ + + V + ++
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALIA 413
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 4e-64
Identities = 107/456 (23%), Positives = 190/456 (41%), Gaps = 49/456 (10%)
Query: 95 FNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
F + + +N++ + L ++ L + + LNNL ++
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQI 73
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP 214
S + L P L +LT+L + +++N + P L +LT LT L LF+NQI P
Sbjct: 74 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129
Query: 215 LDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYL 274
L NL +L ++LS N ++ S + LT+L L ++ + + L L L
Sbjct: 130 L--KNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTD---LKPLANLTTLERL 182
Query: 275 SLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIP 334
++ N ++ S L +LT+L L ++N + P L LT L L L NQ+ I
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG 237
Query: 335 LGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFL 394
+ +L NL +D+++N++ PL LT L L L NQ+S P LT L L
Sbjct: 238 -TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 395 NLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454
LN N+L P + N +L L L N+++ P + +L+ L L N +S ++
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348
Query: 455 PQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSG---------SVPSEIGNCS 505
+ + +++ N++S P + L++++ + P
Sbjct: 349 LANLTN--------INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 398
Query: 506 GLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ N + P + D+++N
Sbjct: 399 SIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLP 433
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 3e-63
Identities = 113/459 (24%), Positives = 187/459 (40%), Gaps = 46/459 (10%)
Query: 96 NFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155
+ + + + + I + L+ L ++ S+N LT P L NL LV++
Sbjct: 41 SQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 96
Query: 156 LSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPL 215
++ + + P L +LT L+ L L +N + P L +LT L L+L SN I+ L
Sbjct: 97 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL 152
Query: 216 DFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLS 275
L L+++ N++ + +LT L LD+SS ++S + L NL L
Sbjct: 153 --SGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 205
Query: 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335
N ++ P LG LT+L +L L+ N L TL+ LT LT L L +NQI+ PL
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL 261
Query: 336 GIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLN 395
L L + + +N++ PL LT L L+L+ NQL P +L L +L
Sbjct: 262 --SGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315
Query: 396 LNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPP 455
L N ++ P + + LQ L NN ++ S + NL+ ++ L N IS +TP
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPL 371
Query: 456 QHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSG--------SVPSEIGNCSGL 507
+ + +T + + +S + P+ I +
Sbjct: 372 ANLTR--------ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSY 423
Query: 508 LNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP 546
++ N + GTV
Sbjct: 424 TEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 213 bits (546), Expect = 9e-63
Identities = 87/356 (24%), Positives = 154/356 (43%), Gaps = 25/356 (7%)
Query: 95 FNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
F + + ++++ L + L ++ + + L NL L
Sbjct: 16 FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYL 71
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP 214
L+ + + P L +L +L+ L + +N + +LT L L L + I+ P
Sbjct: 72 NLNGNQITDISP--LSNLVKLTNLYIGTNKITDISAL--QNLTNLRELYLNEDNISDISP 127
Query: 215 LDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYL 274
L NL + ++L N + S + ++T LN L ++ ++ P I L +L L
Sbjct: 128 L--ANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182
Query: 275 SLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIP 334
SLN N + P L LTSL N + P ++++TRL +LK+ +N+I P
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238
Query: 335 LGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFL 394
L NL L +++ +N++ + DLT L L++ NQ+S S +L+ L L
Sbjct: 239 LA--NLSQLTWLEIGTNQISDINAV--KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL 292
Query: 395 NLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450
LN+N+L + +L +L LS N +T + +LS + D + I
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 2e-62
Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 23/336 (6%)
Query: 119 SEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178
L++ L ++T + L ++ +L ++ + + +LT L L
Sbjct: 16 FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNLEYL 71
Query: 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIA 238
+L+ N + P L +L +LT L + +N+I NL +L+E+ L+ + ++
Sbjct: 72 NLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP 127
Query: 239 STIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL 298
+ +LT + SL+L + + + L YL++ + + P + LT L L
Sbjct: 128 --LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182
Query: 299 DLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIP 358
L++N + P L+ LT L + NQI P+ N+ L + + +NK+ P
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVA--NMTRLNSLKIGNNKITDLSP 238
Query: 359 LTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSL 418
L +L+ L +L++ NQ+S + LT LK LN+ SN+++ S L N L SL
Sbjct: 239 L--ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSL 292
Query: 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454
L+NN L I L+ L L LS N I+ + P
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 2e-59
Identities = 85/415 (20%), Positives = 159/415 (38%), Gaps = 71/415 (17%)
Query: 127 LQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLV 186
L + P +L + L ++++ + L ++ L ++ +
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 187 GPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTN 246
+ +LT L L L NQI PL NL L + + NK+ S + +LTN
Sbjct: 58 SIQG--IEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIGTNKITDI--SALQNLTN 111
Query: 247 LNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306
L L L+ +S P + L + L+L N+ S L +T L+ L ++ + +
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK 168
Query: 307 GPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTN 366
P +++LT L +L L NQI PL +L +L N++ P+ ++T
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISPLA--SLTSLHYFTAYVNQITDITPV--ANMTR 222
Query: 367 LIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLT 426
L L + N+++ P +L+ L +L + +N+++ + + + L+ L + +N ++
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS 278
Query: 427 GRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMT 486
S + NLS L+ L L+ N
Sbjct: 279 D--ISVLNNLSQLNSLFLNNN--------------------------------------- 297
Query: 487 IGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+L IG + L + LS N + PL + ++ D + I
Sbjct: 298 -----QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 5e-48
Identities = 79/351 (22%), Positives = 144/351 (41%), Gaps = 45/351 (12%)
Query: 199 LTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258
TL IN P +L L + + T +L ++ L ++ ++++
Sbjct: 2 AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA 57
Query: 259 GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTR 318
Q I YL NL YL+LN N +T P L L L++L + N + L +LT
Sbjct: 58 SI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111
Query: 319 LTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLS 378
L L L + I+ PL NL + +++ +N + + ++T L YL ++ +++
Sbjct: 112 LRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168
Query: 379 GPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSY 438
P +LT L L+LN N++ P L + SL N +T P + N++
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222
Query: 439 LHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVP 498
L+ L + N I+ ++P + Q LT++ N++S
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQ--------LTWLEIGTNQISD----------------I 258
Query: 499 SEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI 549
+ + + + L + + +N + L + L L L+ N + E I
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVI 307
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 34/232 (14%), Positives = 66/232 (28%), Gaps = 80/232 (34%)
Query: 319 LTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLS 378
TL IN P +L R + + + +L ++ L ++ +++
Sbjct: 2 AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKVA 57
Query: 379 GPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSY 438
+LT L++LNLN N++ P + NL
Sbjct: 58 SIQG--IEYLTNLEYLNLNGNQITDISP--------------------------LSNLVK 89
Query: 439 LHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVP 498
L L + N I+
Sbjct: 90 LTNLYIGTNKITD----------------------------------------------I 103
Query: 499 SEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFIN 550
S + N + L + L+ +++ PL + + L+L N+ + N
Sbjct: 104 SALQNLTNLRELYLNEDNISDISPL--ANLTKMYSLNLGANHNLSDLSPLSN 153
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 4e-55
Identities = 60/317 (18%), Positives = 103/317 (32%), Gaps = 21/317 (6%)
Query: 145 LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204
+ + LY S P L R D + + +
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETR 63
Query: 205 FSNQINGCIPLDFGNLRH--LKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLP 262
+ + ++L L L++L + + + L LP
Sbjct: 64 TGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME-LP 120
Query: 263 QEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTL--------- 313
+ L L+L N L +P+++ L L +L + +P L
Sbjct: 121 DTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 314 SHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLS 373
L L +L+L I S+P I NL+NL+ + + ++ L + I L L LDL
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237
Query: 374 LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433
P FG LK L L ++P ++ L+ L L R+PS I
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 434 RNLSYLHELDLSLNFIS 450
L + + + +
Sbjct: 298 AQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 7e-49
Identities = 60/320 (18%), Positives = 107/320 (33%), Gaps = 23/320 (7%)
Query: 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNL 161
E+ S + + D + + + N NN + L
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68
Query: 162 NGPIPSTLGHLTR--LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGN 219
L T+ L+L S L P L+ L + + + + +P
Sbjct: 69 KA-TADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125
Query: 220 LRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIG---------YLEN 270
L+ + L+ N L + ++I L L L + + LP+ + L N
Sbjct: 126 FAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
Query: 271 LVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330
L L L + +P+++ L +L L + ++ L + P + HL +L L L
Sbjct: 185 LQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL 242
Query: 331 GSIPLGIGNLENLERVDMSS-NKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLT 389
+ P G L+R+ + + L +PL I LT L LDL +PS L
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
Query: 390 LLKFLNLNSNKLNGSIPSEL 409
+ + +
Sbjct: 302 ANCIILVPPHLQAQLDQHRP 321
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 8e-46
Identities = 55/373 (14%), Positives = 116/373 (31%), Gaps = 71/373 (19%)
Query: 169 LGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDL 228
H + L ++ + P L + N + +
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETR 63
Query: 229 SGNKLNGPIASTIGDLT--NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIP 286
+G L A + D T +L+L S L P + L +L +++++ L +P
Sbjct: 64 TGRALKA-TADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME-LP 120
Query: 287 STLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERV 346
T+ + L L L+ N L +P +++ L RL L + + +P + + +
Sbjct: 121 DTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTD----- 174
Query: 347 DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP 406
L NL L L + +P++ +L LK L + ++ L+ ++
Sbjct: 175 ----------ASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALG 222
Query: 407 SELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRD 466
+ + L+ L L + P + L L L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK--------------------- 261
Query: 467 RLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMG 526
+ L ++P +I + L + L +P +
Sbjct: 262 --------DCSNLL---------------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Query: 527 KIIFLEYLDLSYN 539
++ + + +
Sbjct: 299 QLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 3e-39
Identities = 60/343 (17%), Positives = 106/343 (30%), Gaps = 65/343 (18%)
Query: 218 GNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLN 277
+ + + G+ P + + D + + N +
Sbjct: 9 HHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRT 64
Query: 278 VNNLTGPIPSTLGRLTS--LSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335
L L T L+L L P L+ L + + + + +P
Sbjct: 65 GRALKA-TADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPD 121
Query: 336 GIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLS-LNQL--------SGPIPSTFG 386
+ LE + ++ N L +P +I L L L + +L S
Sbjct: 122 TMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 387 HLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSL 446
L L+ L L + S+P+ + N +L+SL + N+ L+ + I +L L ELDL
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR- 237
Query: 447 NFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSG 506
L + P G +
Sbjct: 238 ----------------------------GCTALR---------------NYPPIFGGRAP 254
Query: 507 LLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI 549
L + L + S T+PL++ ++ LE LDL +P I
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 26/224 (11%), Positives = 54/224 (24%), Gaps = 54/224 (24%)
Query: 331 GSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL 390
GS + E + + P + D + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57
Query: 391 LKFLNLNSNKLNGSIPSELMNC--FSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNF 448
+ L + L + +L L + L + P + LS+L + +
Sbjct: 58 PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115
Query: 449 ISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLL 508
+ +P + +GL
Sbjct: 116 LM---------------------------------------------ELPDTMQQFAGLE 130
Query: 509 NVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRI 552
+TL+ N L +P + + L L + +PE +
Sbjct: 131 TLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 4e-55
Identities = 111/498 (22%), Positives = 182/498 (36%), Gaps = 44/498 (8%)
Query: 72 NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILD 131
NL S + LS N +R L ++F FP L+ + I +LS L L
Sbjct: 25 NLPFSTKNLDLSF-NPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82
Query: 132 LSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL-VGPIP 190
L+ N + L++L +L +NL +GHL L L+++ N + +P
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 191 FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK----EVDLSGNKLNGPIASTIGDLTN 246
+LT L L L SN+I D L + +DLS N +N I
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIR 201
Query: 247 LNSLDLSSKQLSGPLPQE-IGYLENLVYLSL------NVNNLTGPIPSTLGRLTSLS--D 297
L+ L L + S + + I L L L N NL S L L +L+ +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 298 LDLSHNSLFG-PIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGP 356
L++ + I + LT +++ L S I + N + +++ + K
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ- 318
Query: 357 IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN--GSIPSELMNCFS 414
L +L L + N+ + L L+FL+L+ N L+ G S
Sbjct: 319 --FPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 415 LQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNH 474
L+ L LS N + + S L L LD + + M+ F + L Y++
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-----LIYLDI 428
Query: 475 QFNRLSGQIPMTIGGLSKL----------SGSVPSEI-GNCSGLLNVTLSNNSLDGTIPL 523
GLS L + +I L + LS L+ P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 524 EMGKIIFLEYLDLSYNNI 541
+ L+ L+++ N +
Sbjct: 489 AFNSLSSLQVLNMASNQL 506
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 1e-47
Identities = 91/442 (20%), Positives = 156/442 (35%), Gaps = 47/442 (10%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
IP + + LDLS N L + L L LSR + L+ LS
Sbjct: 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN-G 235
L L+ N + L+ L L + G+L+ LKE++++ N +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENL----VYLSLNVNNLTGPIPSTLGR 291
+ +LTNL LDLSS ++ ++ L + + L L++N + I +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198
Query: 292 LTSLSDLDLSHNSLFGPIPPT-LSHLTRLTTLKLFSNQINGS---IPLGIGNLENLERVD 347
L L L +N + T + L L +L + LE L +
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 348 MSSNKLEG------PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401
+ +L I LTN+ L + ++ + L L + K
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKF 316
Query: 402 NGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT-PPQHFKQ 460
P+ + SL+ L ++N SE+ +L L LDLS N +S Q
Sbjct: 317 G-QFPTLKLK--SLKRLTFTSNKGGN-AFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 461 KHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGT 520
S L Y++ FN + ++ S L ++ +++L
Sbjct: 372 TTS-----LKYLDLSFNGVI---------------TMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 521 IPLEM-GKIIFLEYLDLSYNNI 541
+ + L YLD+S+ +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHT 433
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 5e-46
Identities = 99/466 (21%), Positives = 156/466 (33%), Gaps = 64/466 (13%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLT-GTIPSKLGNLNNLVELY 155
FS +L+ +N++ IG L L+ L+++HN + +P NL NL L
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 156 LSRSNLNGPIPSTLGHLTRLSI----LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQING 211
LS + + + L L ++ + LDLS N + I +L L L +N +
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSL 214
Query: 212 CIPLD-FGNLRHLKEVDL------SGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQE 264
+ L L+ L + L S + L NL + L L
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274
Query: 265 IG---YLENLVYLSLNVNNLTGPIPS-------------------TLGRLTSLSDLDLSH 302
I L N+ SL + +L SL L +
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334
Query: 303 NSLFGPIPPTLSHLTRLTTLKLFSNQIN--GSIPLGIGNLENLERVDMSSNKLEGPIPLT 360
N + L L L L N ++ G +L+ +D+S N + +
Sbjct: 335 NKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391
Query: 361 IGDLTNLIYLDLSLNQLSG-PIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLI 419
L L +LD + L S F L L +L+++ + SL+ L
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451
Query: 420 LSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNR 478
++ NS +I L L LDLS + + P F S L +N N+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSS-----LQVLNMASNQ 505
Query: 479 LSGQIPMTIGGLSKLSGSVPSEI-GNCSGLLNVTLSNNSLDGTIPL 523
L SVP I + L + L N D + P
Sbjct: 506 LK---------------SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 5e-44
Identities = 85/410 (20%), Positives = 149/410 (36%), Gaps = 33/410 (8%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQI----LD 131
++ ++++ N I+ FS NLE + + I +++ L ++ + LD
Sbjct: 125 TLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 132 LSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPST-LGHLTRLSILDL------SSNS 184
LS N + I L +L L + + + T + L L + L + +
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242
Query: 185 LVGPIPFTLGHLTQLTTLKLFSNQING---CIPLDFGNLRHLKEVDLSGNKLNG-PIAST 240
L L L LT + ++ I F L ++ L + S
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302
Query: 241 IGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDL 300
+L ++ Q L++L L+ N + L SL LDL
Sbjct: 303 NFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDL 354
Query: 301 SHNSL--FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIP 358
S N L G + T L L L N + ++ LE LE +D + L+
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413
Query: 359 LTI-GDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQ 416
++ L NLIYLD+S F L+ L+ L + N + + +L
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473
Query: 417 SLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIR 465
L LS L ++ +LS L L+++ N + + P F + S++
Sbjct: 474 FLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQ 521
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 1e-41
Identities = 89/369 (24%), Positives = 136/369 (36%), Gaps = 25/369 (6%)
Query: 71 CNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSE-IGALSKLQI 129
+ + + LS N + + F L + + S N+ I L+ L++
Sbjct: 173 HQMPLLNLSLDLSL-NPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229
Query: 130 LDL------SHNNLTGTIPSKLGNLNNLVELYLSRSNLNG---PIPSTLGHLTRLSILDL 180
L + NL S L L NL + L+ I LT +S L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289
Query: 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIAST 240
S ++ F+ + L+L + + L+ LK + + NK +
Sbjct: 290 VSVTIERVKDFS--YNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFSEV 344
Query: 241 IGDLTNLNSLDLSSKQLS--GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL 298
DL +L LDLS LS G Q +L YL L+ N + + S L L L
Sbjct: 345 --DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401
Query: 299 DLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL-EGP 356
D H++L L L L + + L +LE + M+ N E
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 357 IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416
+P +L NL +LDLS QL P+ F L+ L+ LN+ SN+L SLQ
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 417 SLILSNNSL 425
+ L N
Sbjct: 522 KIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 8e-41
Identities = 84/433 (19%), Positives = 133/433 (30%), Gaps = 64/433 (14%)
Query: 131 DLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP 190
N IP L + L LS + L + L +LDLS +
Sbjct: 13 QCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 191 FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSL 250
L+ L+TL L N I F L L+++ L IG L L L
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 251 DLSSKQL-SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS----DLDLSHNSL 305
+++ + S LP+ L NL +L L+ N + + L L + LDLS N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 306 FGPIPPTLSHLTRLTTLKLFSNQINGSIPLG-IGNLENLERVDMSSNKLEGPIPLTIGDL 364
I P RL L L +N + ++ I L LE + +
Sbjct: 190 NF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF----------- 237
Query: 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGS---IPSELMNCFSLQSLILS 421
+ L S L L L+ I ++ S L
Sbjct: 238 -------RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 422 NNSLTGRIPSEI--RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRL 479
+ ++ R+ +L ++ + L + N+
Sbjct: 291 SVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKS------------LKRLTFTSNKG 337
Query: 480 SGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLD--GTIPLEMGKIIFLEYLDLS 537
+ SE+ + L + LS N L G L+YLDLS
Sbjct: 338 G---------------NAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 538 YNNIPGTVPEFIN 550
+N + F+
Sbjct: 382 FNGVITMSSNFLG 394
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 2e-54
Identities = 113/508 (22%), Positives = 181/508 (35%), Gaps = 58/508 (11%)
Query: 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSH 134
+ R+ LS N IR + +F L+ + I E L L+ILDL
Sbjct: 25 TTERLLLSF-NYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82
Query: 135 NNLTGTIPSKLGNLNNLVELYLSRSNLNGPI--PSTLGHLTRLSILDLSSNSLVG-PIPF 191
+ + P L +L EL L L+ + +L L+ LDLS N + +
Sbjct: 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142
Query: 192 TLGHLTQLTTLKLFSNQINGCIPLDFGNLR--HLKEVDLSGNKLNGPIASTIGDLTN--- 246
+ G L L ++ SNQI + L+ L L+ N L ++ G N
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 247 ---LNSLDLSSKQLSGPLP------------QEIGYLENLVYLSLNVNNLTGPIPSTLGR 291
L LD+S + + + +++ +N+ P +T
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 292 L--TSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMS 349
L +S+ LDLSH +F L L L L N+IN L+NL+ +++S
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 350 SNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN-----GS 404
N L L + Y+DL N ++ TF L L+ L+L N L S
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382
Query: 405 IPSELMNC----------FSLQSLILSNNSLTG-RIPSEIRNLSYLHELDLSLNFISGMT 453
IP ++ + + LS N L I + + +L L L+ N S +
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442
Query: 454 PPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLS 513
Q + S L + N L + S L + L+
Sbjct: 443 GDQTPSENPS-----LEQLFLGENMLQLAWETELC---------WDVFEGLSHLQVLYLN 488
Query: 514 NNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+N L+ P + L L L+ N +
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRL 516
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 2e-49
Identities = 98/470 (20%), Positives = 160/470 (34%), Gaps = 52/470 (11%)
Query: 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPI-PSTLGHLTRLSILDLSS 182
L+ + L LS N + S L L L L I +L L ILDL S
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCI--PLDFGNLRHLKEVDLSGNKLNG-PIAS 239
+ + P L L L+L+ ++ + F NL+ L +DLS N++ +
Sbjct: 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142
Query: 240 TIGDLTNLNSLDLSSKQLSGPLPQEIGYLE--NLVYLSLNVNNLTGPIPSTLG------R 291
+ G L +L S+D SS Q+ E+ L+ L + SL N+L + G R
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 292 LTSLSDLDLSHNSLFGPIPPTLSH------------LTRLTTLKLFSNQINGSIPLGIGN 339
L LD+S N I S+ + + I
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 340 LE--NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLN 397
L ++ +D+S + L +L L+L+ N+++ F L L+ LNL+
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 398 SNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQH 457
N L S + + L N + + L L LDL N ++ +
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382
Query: 458 FKQKH---------SIRDRLLTYVNHQFNRLSG-QIPMTIGGLSKL--------SGSVPS 499
+ ++ NRL I + + L S S
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442
Query: 500 EIGNCSGLLNVT---LSNNSLDGTIPLEMGKIIF-----LEYLDLSYNNI 541
S ++ L N L E+ +F L+ L L++N +
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 7e-39
Identities = 74/344 (21%), Positives = 128/344 (37%), Gaps = 23/344 (6%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSK--LQILDLSHNNLTGTIPSKLGNL 148
K F+ ++ + NI + L++ ++ LDLSH + L
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289
Query: 149 NNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ 208
+L L L+ + +N L L +L+LS N L L ++ + L N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 209 INGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYL 268
I F L L+ +DL N L +TI + ++ + LS +L +
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINL--- 401
Query: 269 ENLVYLSLNVNNLTG-PIPSTLGRLTSLSDLDLSHNSL-FGPIPPTLSHLTRLTTLKLFS 326
+ L+ N L I L R+ L L L+ N T S L L L
Sbjct: 402 -TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 327 NQINGSIPLGI-----GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPI 381
N + + + L +L+ + ++ N L P LT L L L+ N+L+
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520
Query: 382 PSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSL 425
+ L+ L+++ N+L P ++ L L +++N
Sbjct: 521 HNDL--PANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKF 559
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 2e-15
Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 30/217 (13%)
Query: 346 VDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI 405
L +P L L LS N + S+F L L+ L L S +I
Sbjct: 9 AFYRFCNLTQ-VP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64
Query: 406 PSE-LMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT-PPQHFKQKHS 463
E N +L+ L L ++ + P + L +L EL L +S +F+ +
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124
Query: 464 IRDRLLTYVNHQFNRLSG-QIPMTIGGLSKL-----SGSVPSEIGNCS-------GLLNV 510
LT ++ N++ + + G L+ L S + + L
Sbjct: 125 -----LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179
Query: 511 TLSNNSLDGTIP------LEMGKIIFLEYLDLSYNNI 541
+L+ NSL + + + + LE LD+S N
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 5e-51
Identities = 73/408 (17%), Positives = 141/408 (34%), Gaps = 26/408 (6%)
Query: 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN 160
+ ++ S++ + S + ++ LDLS N L+ + L L L LS +
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 161 LNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNL 220
L + L L+ L LDL++N + L + TL +N I+ +
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---VSCSRG 119
Query: 221 RHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG-PLPQEIGYLENLVYLSLNVN 279
+ K + L+ NK+ G + + LDL ++ + + L +L+L N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 280 NLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGN 339
+ + + L LDLS N L + P +T + L +N++ I +
Sbjct: 180 FIYD-VKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235
Query: 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSN 399
+NLE D+ N L N ++ + T+ + +
Sbjct: 236 SQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294
Query: 400 KLNGSIPSELMNCFSLQSLILSNNSLTG----RIPSEIRNLSYLHELDLSLNFISGMTPP 455
+L+ + S G R+ E N + E+D +
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV-ID 353
Query: 456 QHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGN 503
Q +K + + + L Q+ ++L G++ +G
Sbjct: 354 QVTLRKQA-----KITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 6e-47
Identities = 56/361 (15%), Positives = 112/361 (31%), Gaps = 20/361 (5%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
N++ + + +S +++ +KL++L+LS N L T+ L +L+ L L L
Sbjct: 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD 216
+ + + L + L ++N++ + + L +N+I LD
Sbjct: 88 NNNYV-----QELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLD 139
Query: 217 FGNLRHLKEVDLSGNKLNG-PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLS 275
G ++ +DL N+++ A L L+L + + ++ L L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLD 197
Query: 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335
L+ N L + ++ + L +N L I L L L N + L
Sbjct: 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH-CGTL 254
Query: 336 GIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLN 395
+N ++ ++ + T L LK
Sbjct: 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314
Query: 396 LNSNKLNGS----IPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG 451
GS + E N + + I L+ +
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374
Query: 452 M 452
Sbjct: 375 Q 375
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-32
Identities = 48/363 (13%), Positives = 103/363 (28%), Gaps = 10/363 (2%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTG-TIPSKLGNLN 149
+ + + S ++ + + I+ + G S++Q LDL N + + +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI 209
L L L + + + + +L LDLSSN L + +T + L +N++
Sbjct: 170 TLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226
Query: 210 NGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLE 269
I ++L+ DL GN + N ++ + + Q
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Query: 270 NLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL----FGPIPPTLSHLTRLTTLKLF 325
RL +L + + S + + R +
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344
Query: 326 SNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTF 385
Q I + ++ L+ + L +T
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404
Query: 386 GHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLS 445
L + + + + +++ + + T R E DL+
Sbjct: 405 EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464
Query: 446 LNF 448
L
Sbjct: 465 LAS 467
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 2e-20
Identities = 45/230 (19%), Positives = 87/230 (37%), Gaps = 29/230 (12%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
+I N + ++ + L+ + N+ LDLS N LS + T L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 392 KFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG 451
+ LNL+SN L +L + +L++L L+NN + E+ + L + N IS
Sbjct: 61 ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113
Query: 452 MTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKL-----------SGSVPSE 500
+ + + N+++ + G S++ + +
Sbjct: 114 V-SCSRG--------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 501 IGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFIN 550
+ L ++ L N + + ++ L+ LDLS N + PEF +
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQS 212
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-49
Identities = 90/475 (18%), Positives = 174/475 (36%), Gaps = 53/475 (11%)
Query: 92 LDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNL 151
++S + ++ I+ ++ A + LQ+L L + + +L +L
Sbjct: 17 FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 152 VELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQIN 210
L LS ++L+ S G L+ L L+L N + +LT L TL++ + +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 211 GCIP-LDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLE 269
I +DF L L E+++ L + ++ + +++ L L + + L L
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196
Query: 270 NLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL-------FGPIPPTLSHLTRLTTL 322
++ YL L NL S L S + F + L ++ L+ +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256
Query: 323 KLFSNQINGSIPLGIGNLE-----------NLERVDMSSNKLEGPIPLTIGDLTNLIYLD 371
+ +NG + + R+ + L + L + +
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316
Query: 372 LSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI---PSELMNCFSLQSLILSNNSLT-- 426
+ +++ S HL L+FL+L+ N + + SLQ+L+LS N L
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 427 GRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMT 486
+ + L L LD+S N M P + + ++N +
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPM--PDSCQWPEK-----MRFLNLSSTGIR------ 423
Query: 487 IGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
V + I L + +SNN+LD + L + + L+ L +S N +
Sbjct: 424 ---------VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKL 463
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 7e-45
Identities = 80/459 (17%), Positives = 147/459 (32%), Gaps = 57/459 (12%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISG-NIPSEIGALSKLQILDLSHNNLTGTIPSK-LGNL 148
L F +L+ + + + S L+ LQ L + + I L
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 149 NNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ 208
+L EL + +L +L + + L L + + L+ + L+L
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207
Query: 209 INGCIPLDFGNLRHLKEVDLSGNKLNGP----------IASTIGDLTNLNSLDLSSKQLS 258
+ + + + + I +L+ + D + L
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267
Query: 259 GPLPQEIGYLE--------NLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIP 310
P E + + L + L + + L + + + ++ +F
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327
Query: 311 PTLSHLTRLTTLKLFSNQINGSI---PLGIGNLENLERVDMSSNKLE--GPIPLTIGDLT 365
HL L L L N + G +L+ + +S N L + L
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387
Query: 366 NLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSL 425
NL LD+S N P+P + ++FLNL+S + + + + +L+ L +SNN+L
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNL 443
Query: 426 TGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPM 485
L L EL +S N + + F L + N+L
Sbjct: 444 D-SFSL---FLPRLQELYISRNKLKTLPDASLFPV--------LLVMKISRNQLK----- 486
Query: 486 TIGGLSKLSGSVPSEI-GNCSGLLNVTLSNNSLDGTIPL 523
SVP I + L + L N D + P
Sbjct: 487 ----------SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 4e-40
Identities = 64/392 (16%), Positives = 132/392 (33%), Gaps = 34/392 (8%)
Query: 79 RISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLT 138
+ + V ++ + +F+ +L I ++ + ++ + L L +
Sbjct: 127 TLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185
Query: 139 GTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQ 198
+ L+++ L L +NL S L S + + + L +
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245
Query: 199 LT------------------TLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIAST 240
L ++ + L ++ + + L +++
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305
Query: 241 IGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT---GPIPSTLGRLTSLSD 297
L + + + + ++ +L++L +L L+ N + + G SL
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365
Query: 298 LDLSHNSL--FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG 355
L LS N L L L LT+L + N + +P E + +++SS +
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV 424
Query: 356 PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSL 415
+ L LD+S N L S L L+ L ++ NKL ++P L
Sbjct: 425 ---VKTCIPQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLK-TLPDA-SLFPVL 475
Query: 416 QSLILSNNSLTGRIPSEIRNLSYLHELDLSLN 447
+ +S N L L+ L ++ L N
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 2e-15
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 19/207 (9%)
Query: 346 VDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI 405
D S IP + + LDLS N+++ L+ L L S+++N
Sbjct: 10 CDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66
Query: 406 PSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIR 465
+ SL+ L LS+N L+ S LS L L+L N + F +
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN-- 124
Query: 466 DRLLTYVN-HQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSN 514
L + S + GL+ L + + + ++TL
Sbjct: 125 ---LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 515 NSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ + + + + YL+L N+
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNL 208
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 2e-49
Identities = 60/327 (18%), Positives = 123/327 (37%), Gaps = 17/327 (5%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
I ++ +I ++ ++L + S + N+ EL LS + L+ + L T+L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
+L+LSSN L + L+ L TL L +N + + ++ + + N ++
Sbjct: 62 LLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-- 112
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG-PIPSTLGRLTSL 295
+ ++ L++ +++ + G + YL L +N + +L
Sbjct: 113 -RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 296 SDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG 355
L+L +N ++ + +L TL L SN++ + + + + + +NKL
Sbjct: 172 EHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228
Query: 356 PIPLTIGDLTNLIYLDLSLNQLS-GPIPSTFGHLTLLKFLNLNSNK-LNGSIPSELMNCF 413
I + NL + DL N G + F ++ + + K L G E
Sbjct: 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287
Query: 414 SLQSLILSNNSLTGRIPSEIRNLSYLH 440
L + L + H
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALGHHH 314
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 5e-47
Identities = 65/291 (22%), Positives = 112/291 (38%), Gaps = 19/291 (6%)
Query: 195 HLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSS 254
+ + K+ + + + + ++KE+DLSGN L+ A+ + T L L+LSS
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 255 KQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLS 314
L ++ L L L LN N + L S+ L ++N++ + S
Sbjct: 68 NVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSC--S 117
Query: 315 HLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG-PIPLTIGDLTNLIYLDLS 373
+ L +N+I L G ++ +D+ N+++ L +L+L
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 374 LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433
N + LK L+L+SNKL + E + + + L NN L I +
Sbjct: 178 YNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233
Query: 434 RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP 484
R L DL N T F + R+ T +L+GQ
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKN----QRVQTVAKQTVKKLTGQNE 280
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 6e-46
Identities = 58/300 (19%), Positives = 109/300 (36%), Gaps = 16/300 (5%)
Query: 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN 160
+ ++ S++ + S + ++ LDLS N L+ + L L L LS +
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 161 LNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNL 220
L + L L+ L LDL++N + L + TL +N I+ +
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---VSCSRG 119
Query: 221 RHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG-PLPQEIGYLENLVYLSLNVN 279
+ K + L+ NK+ G + + LDL ++ + + L +L+L N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 280 NLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGN 339
+ + + L LDLS N L + P +T + L +N++ I +
Sbjct: 180 FIYD-VKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235
Query: 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSN 399
+NLE D+ N L N ++ + T+ + +
Sbjct: 236 SQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-41
Identities = 61/361 (16%), Positives = 115/361 (31%), Gaps = 60/361 (16%)
Query: 213 IPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLV 272
I N K ++ + L +AS N+ LDLS LS ++ L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 273 YLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGS 332
L+L+ N L + L L++L LDL++N + L + TL +N I+
Sbjct: 62 LLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-R 113
Query: 333 IPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSG-PIPSTFGHLTLL 391
+ + + + +++NK+ L G + + YLDL LN++ L
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 392 KFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG 451
+ LNL N + + ++ L++L LS+N L + E ++ + + + L N +
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227
Query: 452 MTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVT 511
+ + L +
Sbjct: 228 --------------------------------------------LIEKALRFSQNLEHFD 243
Query: 512 LSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMINFSISPTPSP 571
L N L ++ + + L + P+P
Sbjct: 244 LRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302
Query: 572 A 572
Sbjct: 303 F 303
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 6e-39
Identities = 47/274 (17%), Positives = 98/274 (35%), Gaps = 16/274 (5%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
N++ + + +S +++ +KL++L+LS N L L +L+ L L L
Sbjct: 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDL 87
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD 216
+ + + L + L ++N++ + + L +N+I LD
Sbjct: 88 NNNYV-----QELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLD 139
Query: 217 FGNLRHLKEVDLSGNKLNG-PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLS 275
G ++ +DL N+++ A L L+L + + ++ L L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLD 197
Query: 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN-GSIP 334
L+ N L + ++ + L +N L I L L L N + G++
Sbjct: 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLR 255
Query: 335 LGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLI 368
+ ++ V + K + L
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 10/215 (4%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTG-TIPSKLGNLN 149
+ + + S ++ + + I+ + G S++Q LDL N + + +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI 209
L L L + + + + +L LDLSSN L + +T + L +N++
Sbjct: 170 TLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226
Query: 210 NGCIPLDFGNLRHLKEVDLSGNKLN-GPIASTIGDLTNLNSLDLSS-KQLSGPLPQEIGY 267
I ++L+ DL GN + G + + ++ + K+L+G +E
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285
Query: 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSH 302
Y + +L P RL +L H
Sbjct: 286 PTLGHYGAYCCEDLPAP---FADRLIALGHHHHHH 317
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 7e-22
Identities = 42/221 (19%), Positives = 83/221 (37%), Gaps = 29/221 (13%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
+I N + ++ + L+ + N+ LDLS N LS + T L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 392 KFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG 451
+ LNL+SN L +L + +L++L L+NN + E+ + L + N IS
Sbjct: 61 ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113
Query: 452 MTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKL-----------SGSVPSE 500
+ + + N+++ + G S++ + +
Sbjct: 114 V-SCSRG--------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 501 IGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ L ++ L N + + ++ L+ LDLS N +
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL 203
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 3e-49
Identities = 97/477 (20%), Positives = 171/477 (35%), Gaps = 83/477 (17%)
Query: 96 NFSCFPNLESFRIWYSNISGNIPSEIGALS-------------KLQILDLSHNNLTGTIP 142
+ + +S N P G + L+L++ L+ ++P
Sbjct: 29 EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87
Query: 143 SKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202
+L L S ++L +P L L + + + +L P L L
Sbjct: 88 ELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYL 136
Query: 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLP 262
+ +NQ+ +P + N LK +D+ N L +L + + QL LP
Sbjct: 137 GVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK----KLPDLPPSLEFIAAGNNQLEE-LP 189
Query: 263 QEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTL 322
E+ L L + + N+L +P L S + +N L P L +L LTT+
Sbjct: 190 -ELQNLPFLTAIYADNNSLKK-LPDLPLSLES---IVAGNNIL--EELPELQNLPFLTTI 242
Query: 323 KLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIP 382
+N + ++P +LE L ++ N L +P LT L + + LS P
Sbjct: 243 YADNNLLK-TLPDLPPSLEAL---NVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPP 297
Query: 383 STFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHEL 442
+ L +LN +SN++ S+ + L+ L +SNN L +P+ L L
Sbjct: 298 N-------LYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPPR---LERL 342
Query: 443 DLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLS-----GSV 497
S N ++ P+ + L ++ ++N L + P + L V
Sbjct: 343 IASFNHLA--EVPELPQN--------LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEV 391
Query: 498 PSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMP 554
P N L + N L P +E L ++ + EF +
Sbjct: 392 PELPQNLKQL---HVETNPLR-EFPDIPES---VEDLRMNSERV-VDPYEFAHETTD 440
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 1e-46
Identities = 87/431 (20%), Positives = 157/431 (36%), Gaps = 70/431 (16%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
I + + LQ +NLT +P + N+ + E Y + S P G ++
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
+ L Q L+L + ++ +P +L L S N L
Sbjct: 62 VSRLRDCL-----------DRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-E 105
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
+ L +L + + K LS P L YL ++ N L +P L + L
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEK-LPE-LQNSSFLK 156
Query: 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGP 356
+D+ +NSL +P L + +NQ+ +P + NL L + +N L+
Sbjct: 157 IIDVDNNSL-KKLPDLPPSLEFIA---AGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL 210
Query: 357 IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416
L +L + N L +L L + ++N L ++P + L+
Sbjct: 211 PDL----PLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LE 260
Query: 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQF 476
+L + +N LT +P ++L++L + + +S PP L Y+N
Sbjct: 261 ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSE-LPPN------------LYYLNASS 306
Query: 477 NRLSGQIPMTIGGLSKLS------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIF 530
N + + L +L+ +P+ L + S N L +P
Sbjct: 307 NEIR-SLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHL-AEVPELPQN--- 358
Query: 531 LEYLDLSYNNI 541
L+ L + YN +
Sbjct: 359 LKQLHVEYNPL 369
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-37
Identities = 69/398 (17%), Positives = 126/398 (31%), Gaps = 77/398 (19%)
Query: 98 SCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPS-------------- 143
P+LES ++++ +P +L L + + + L+ P
Sbjct: 88 ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146
Query: 144 -KLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202
+L N + L + + ++L +P L + +N L +L LT +
Sbjct: 147 PELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFI---AAGNNQLEELPEL--QNLPFLTAI 200
Query: 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLP 262
+N + +P +L + N L + +L L ++ + L LP
Sbjct: 201 YADNNSLK-KLPDLPLSLESI---VAGNNILEEL--PELQNLPFLTTIYADNNLLKT-LP 253
Query: 263 QEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHL------ 316
LE L + +L P LT L + + L +PP L +L
Sbjct: 254 DLPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNE 308
Query: 317 --------TRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLI 368
L L + +N++ +P LE L S N L +P NL
Sbjct: 309 IRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPELPQ---NLK 360
Query: 369 YLDLSLNQLSGPIPSTFGHLTL----------------LKFLNLNSNKLNGSIPSELMNC 412
L + N L P + LK L++ +N L P
Sbjct: 361 QLHVEYNPLRE-FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIP--- 415
Query: 413 FSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450
S++ L +++ + L + +
Sbjct: 416 ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 7e-20
Identities = 50/250 (20%), Positives = 91/250 (36%), Gaps = 47/250 (18%)
Query: 309 IPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLI 368
I P T L S+ + +P+ N+++ + ++ E P G+ +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 369 YLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428
L L LN+ L+ S+P L+SL+ S NSLT
Sbjct: 62 VSRLRDCLDRQ-----------AHELELNNLGLS-SLPELP---PHLESLVASCNSLT-E 105
Query: 429 IPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIG 488
+P ++L L + +L +S + P LL Y+ N+L ++P +
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP-------------LLEYLGVSNNQLE-KLP-ELQ 150
Query: 489 GLSKLS---------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYN 539
S L +P + L + NN L+ +P E+ + FL + N
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNN 205
Query: 540 NIPGTVPEFI 549
++ +P+
Sbjct: 206 SLK-KLPDLP 214
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 4e-48
Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 7/330 (2%)
Query: 98 SCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLS 157
C + +P I ++ ++LDL N + + + +L EL L+
Sbjct: 8 ECSAQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64
Query: 158 RSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDF 217
+ ++ P +L L L L SN L L+ LT L + N+I + F
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124
Query: 218 GNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLN 277
+L +LK +++ N L L +L L L L+ + + +L L+ L L
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184
Query: 278 VNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLG- 336
N+ + RL L L++SH + P + LT+L + + ++P
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243
Query: 337 IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNL 396
+ +L L +++S N + + +L L + L QL+ P F L L+ LN+
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303
Query: 397 NSNKLNGSIPSELMNCF-SLQSLILSNNSL 425
+ N+L ++ + + +L++LIL +N L
Sbjct: 304 SGNQLT-TLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 2e-42
Identities = 73/310 (23%), Positives = 115/310 (37%), Gaps = 8/310 (2%)
Query: 72 NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEI-GALSKLQIL 130
+ + L N I+ L+Q F+ FP+LE + + +S + L L+ L
Sbjct: 29 GIPTETRLLDLGK-NRIK-TLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTL 85
Query: 131 DLSHNNLTGTIPSK-LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPI 189
L N L IP L+NL +L +S + + + L L L++ N LV
Sbjct: 86 GLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144
Query: 190 PFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNS 249
L L L L + +L L + L +N + L L
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204
Query: 250 LDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPI 309
L++S + Y NL LS+ NLT + L L L+LS+N +
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264
Query: 310 PPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLI 368
L L RL ++L Q+ + L L +++S N+L + NL
Sbjct: 265 GSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323
Query: 369 YLDLSLNQLS 378
L L N L+
Sbjct: 324 TLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 9e-42
Identities = 71/339 (20%), Positives = 119/339 (35%), Gaps = 30/339 (8%)
Query: 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG 187
+ + +P + L L ++ + L L+L+ N +
Sbjct: 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 188 PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNL 247
P +L L TL L SN++ F L +L ++D+S NK+ + DL NL
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 248 NSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG 307
SL++ L + L +L L+L NLT L L L L L H ++
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
Query: 308 PIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNL 367
+ L RL L++ ++ NL + ++ L L + L L
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250
Query: 368 IYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTG 427
+L+LS N +S S L LQ + L L
Sbjct: 251 RFLNLSYNPISTIEGSMLHELL------------------------RLQEIQLVGGQLA- 285
Query: 428 RIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIR 465
+ R L+YL L++S N ++ + F ++
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLE 323
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-33
Identities = 71/368 (19%), Positives = 128/368 (34%), Gaps = 77/368 (20%)
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
+ V +P + T+ L L N+I +F + HL+E++L+ N ++
Sbjct: 15 AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-- 69
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
+ + L NL L L N L L++L+
Sbjct: 70 --------------AVEPGAFNN--------LFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107
Query: 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEG 355
LD+S N + + L L +L++ N + I L +LE++ + L
Sbjct: 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 356 PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSL 415
+ L LI L L ++ +F L LK L ++ ++ + +L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 416 QSLILSNNSLTGRIPSE-IRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNH 474
SL +++ +LT +P +R+L YL L+LS N IS +I +L
Sbjct: 227 TSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS------------TIEGSMLH---- 269
Query: 475 QFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEM-GKIIFLEY 533
L +L + L L + + +L
Sbjct: 270 --------------ELLRLQ--------------EIQLVGGQLA-VVEPYAFRGLNYLRV 300
Query: 534 LDLSYNNI 541
L++S N +
Sbjct: 301 LNVSGNQL 308
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-30
Identities = 70/300 (23%), Positives = 117/300 (39%), Gaps = 35/300 (11%)
Query: 248 NSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG 307
++ K+ +P+ I L L N + L +L+L+ N +
Sbjct: 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-S 69
Query: 308 PIPP-TLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLT 365
+ P ++L L TL L SN++ IPLG+ L NL ++D+S NK+ + DL
Sbjct: 70 AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128
Query: 366 NLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQSLILSNNS 424
NL L++ N L F L L+ L L L SIP+E L + L L L + +
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187
Query: 425 LTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQI 483
+ I + L L L++S P + LT ++ L+
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN------LTSLSITHCNLT--- 237
Query: 484 PMTIGGLSKLSGSVPSE-IGNCSGLLNVTLSNNSLDGTIPLEM-GKIIFLEYLDLSYNNI 541
+VP + + L + LS N + TI M +++ L+ + L +
Sbjct: 238 ------------AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL 284
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 6e-15
Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 51/252 (20%)
Query: 298 LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357
+ +P + T L L N+I + +LE ++++ N +
Sbjct: 16 VLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72
Query: 358 PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSEL-MNCFSLQ 416
P +L NL L L N+L F L+ L L+++ NK+ + + + ++L+
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLK 131
Query: 417 SLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQ 475
SL + +N L I L+ L +L L ++ SI L+
Sbjct: 132 SLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT------------SIPTEALS----- 173
Query: 476 FNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLD 535
L L + L + +++ ++ L+ L+
Sbjct: 174 -------------HLHGLI--------------VLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 536 LSYNNIPGTVPE 547
+S+ T+
Sbjct: 207 ISHWPYLDTMTP 218
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 1e-46
Identities = 66/334 (19%), Positives = 121/334 (36%), Gaps = 15/334 (4%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
I S + + + + LNN + S + + L ++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
+L+L+ + + + + L + N I P F N+ L + L N L+
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
+ L +L +S+ L +L L L+ N LT + L + SL
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLF 189
Query: 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGP 356
++S+N L TL+ + L N IN + + L + + N L
Sbjct: 190 HANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-D 240
Query: 357 IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416
+ + L+ +DLS N+L + F + L+ L +++N+L ++ +L+
Sbjct: 241 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298
Query: 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450
L LS+N L + L L L N I
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-46
Identities = 65/334 (19%), Positives = 133/334 (39%), Gaps = 22/334 (6%)
Query: 95 FNFSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIPSKLGNLNNLVE 153
F N + S + +P+ + + ++++L+L+ + + + +
Sbjct: 39 FEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 97
Query: 154 LYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCI 213
LY+ + + P ++ L++L L N L + +LTTL + +N +
Sbjct: 98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157
Query: 214 PLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVY 273
F L+ + LS N+L + + +L ++S LS + +
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEE 209
Query: 274 LSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSI 333
L + N++ + + L+ L L HN+L L + L + L N++ I
Sbjct: 210 LDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KI 263
Query: 334 PLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLK 392
++ LER+ +S+N+L + L + L LDLS N L + L+
Sbjct: 264 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLE 321
Query: 393 FLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLT 426
L L+ N + ++ + +L++L LS+N
Sbjct: 322 NLYLDHNSIV-TLKLSTHH--TLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-39
Identities = 66/379 (17%), Positives = 118/379 (31%), Gaps = 63/379 (16%)
Query: 165 IPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK 224
I S L + + + + F L + ++ + + R ++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 225 EVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284
++L+ ++ + L + + P + L L L N+L+
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132
Query: 285 IPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGIGNLENL 343
L+ L +S+N+L I T T L L+L SN++ + L + +L
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSL 188
Query: 344 ERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG 403
++S N L T+ + LD S N ++ LT L L N L
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLT- 239
Query: 404 SIPSELMNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKH 462
L+N L + LS N L +I + L L +S N +
Sbjct: 240 DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV------------ 285
Query: 463 SIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIP 522
++ L + LS+N L +
Sbjct: 286 ---------------------------------ALNLYGQPIPTLKVLDLSHNHLL-HVE 311
Query: 523 LEMGKIIFLEYLDLSYNNI 541
+ LE L L +N+I
Sbjct: 312 RNQPQFDRLENLYLDHNSI 330
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 44/245 (17%), Positives = 84/245 (34%), Gaps = 14/245 (5%)
Query: 309 IPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLI 368
I L + + + + L N + V ++ + + +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 369 YLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428
L+L+ Q+ F + ++ L + N + P N L L+L N L+
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 131
Query: 429 IPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTI 487
+P I N L L +S N + + F+ S L + NRL+ I
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTS-----LQNLQLSSNRLTHVDLSLI 185
Query: 488 GGLSKL--SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTV 545
L S ++ S + + + S+NS++ + + L L L +NN+
Sbjct: 186 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNL-TDT 241
Query: 546 PEFIN 550
+N
Sbjct: 242 AWLLN 246
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 26/221 (11%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
I + V + + L N + + + + +
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71
Query: 392 KFLNLNSNKLNGSIPSE-LMNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFI 449
+ LNLN ++ I + ++Q L + N++ +P + +N+ L L L N +
Sbjct: 72 ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129
Query: 450 SGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLS---------GSVPSE 500
S + P F LT ++ N L T + L V
Sbjct: 130 SSL-PRGIFHNTPK-----LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-- 181
Query: 501 IGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ L + +S N L T+ + I +E LD S+N+I
Sbjct: 182 LSLIPSLFHANVSYNLLS-TLAIP----IAVEELDASHNSI 217
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 167 bits (423), Expect = 9e-44
Identities = 66/334 (19%), Positives = 121/334 (36%), Gaps = 15/334 (4%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
I S + + + + LNN + S + + L ++
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
+L+L+ + + + + L + N I P F N+ L + L N L+
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
+ L +L +S+ L +L L L+ N LT + L + SL
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLF 195
Query: 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGP 356
++S+N L TL+ + L N IN + + L + + N L
Sbjct: 196 HANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-D 246
Query: 357 IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416
+ + L+ +DLS N+L + F + L+ L +++N+L ++ +L+
Sbjct: 247 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304
Query: 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450
L LS+N L + L L L N I
Sbjct: 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 9e-39
Identities = 71/379 (18%), Positives = 128/379 (33%), Gaps = 42/379 (11%)
Query: 165 IPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK 224
I S L + + + + F L + ++ + + R ++
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78
Query: 225 EVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284
++L+ ++ + L + + P + L L L N+L+
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138
Query: 285 IPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGIGNLENL 343
L+ L +S+N+L I T T L L+L SN++ + L + +L
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSL 194
Query: 344 ERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG 403
++S N L T+ + LD S N ++ LT L L N L
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLT- 245
Query: 404 SIPSELMNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKH 462
L+N L + LS N L +I + L L +S N + + + +
Sbjct: 246 DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIP 301
Query: 463 SIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIP 522
+ L ++ N L V L N+ L +NS+ T+
Sbjct: 302 T-----LKVLDLSHNHLL---------------HVERNQPQFDRLENLYLDHNSI-VTLK 340
Query: 523 LEMGKIIFLEYLDLSYNNI 541
L L+ L LS+N+
Sbjct: 341 L--STHHTLKNLTLSHNDW 357
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 5e-23
Identities = 63/348 (18%), Positives = 119/348 (34%), Gaps = 26/348 (7%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNN 150
+L + S P+L N+S N+ S + ++ LD SHN++ +
Sbjct: 182 RLTHVDLSLIPSLFHA-----NVSYNLLSTLAIPIAVEELDASHNSIN-VVRG--PVNVE 233
Query: 151 LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQIN 210
L L L +NL + L + L +DLS N L + + +L L + +N++
Sbjct: 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 211 GCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLEN 270
+ L + LK +DLS N L + L +L L + L +
Sbjct: 292 A-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHT 346
Query: 271 LVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSH-LTRLTTLKLFSNQI 329
L L+L+ N+ S +++ + I L H L + K + +++
Sbjct: 347 LKNLTLSHNDWDC--NSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404
Query: 330 NGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLT 389
I L +E ++R + + TI + +L + +
Sbjct: 405 LQYIALT-SVVEKVQRAQGRCSATD-----TINSVQSLSHYITQQGGVPLQGNEQ--LEA 456
Query: 390 LLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLS 437
+ L +L + L + I +N + S
Sbjct: 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSS 504
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 8e-19
Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 15/240 (6%)
Query: 306 FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLT 365
+ I L + + + + L N + V ++ + +
Sbjct: 16 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75
Query: 366 NLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQSLILSNNS 424
+ L+L+ Q+ F + ++ L + N + +P N L L+L N
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 134
Query: 425 LTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQI 483
L+ +P I N L L +S N + + F+ S L + NRL+
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTS-----LQNLQLSSNRLTHVD 187
Query: 484 PMTIGGLSKL--SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
I L S ++ S + + + S+NS++ + + L L L +NN+
Sbjct: 188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNL 244
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 46/318 (14%), Positives = 90/318 (28%), Gaps = 14/318 (4%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNN 150
K+ F LE I + + + + L++LDLSHN+L + +
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 325
Query: 151 LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQIN 210
L LYL +++ + L L L LS N L + + +
Sbjct: 326 LENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 380
Query: 211 GCIPLDFGNLRHLKEVD--LSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYL 268
I + KE D L +++ + S+ + Y+
Sbjct: 381 CKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYI 440
Query: 269 ENLVYLSLNVNN-LTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327
+ L N L + + L++ + L + T L +L +
Sbjct: 441 TQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLH--AEIDTNLRRYRLPKD 498
Query: 328 QINGSIPLGIGNLENLERVDMSSNKLEGPIPLTI-GDLTNLIYLDLSLNQLSGPIPSTFG 386
+ S +L+ + L+ L + +
Sbjct: 499 GLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRA 558
Query: 387 HLT-LLKFLNLNSNKLNG 403
L + +L K+
Sbjct: 559 KQAELRQETSLKRQKVKQ 576
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 8e-43
Identities = 77/349 (22%), Positives = 132/349 (37%), Gaps = 46/349 (13%)
Query: 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
+ +L++ + LT T+P L ++ L + +NL +P+ L L ++S N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LPALPPELRTL---EVSGN 91
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGD 243
L +P L +L+ + P L L + GN+L S
Sbjct: 92 QLTS-LPVLPPGLLELSIFSNPLTHL----PALPSGLCKL---WIFGNQLT----SLPVL 139
Query: 244 LTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHN 303
L L +S QL+ LP L L N LT +P L L +S N
Sbjct: 140 PPGLQELSVSDNQLAS-LPALPS---ELCKLWAYNNQLTS-LPMLPSGLQEL---SVSDN 191
Query: 304 SLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGD 363
L +P S L +L +N++ S+P L+ L +S N+L +P+ +
Sbjct: 192 QLAS-LPTLPSELYKLWAY---NNRLT-SLPALPSGLKEL---IVSGNRLTS-LPVLPSE 242
Query: 364 LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423
L L +S N+L+ +P L L++ N+L +P L++ S ++ L N
Sbjct: 243 LKEL---MVSGNRLTS-LPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294
Query: 424 SLTGRIPSEIRNLSYLHELDLSLNFISGMTP--PQHFKQKHSIRDRLLT 470
L+ R +R ++ + P+ + H L
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLV 343
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 1e-35
Identities = 75/371 (20%), Positives = 122/371 (32%), Gaps = 88/371 (23%)
Query: 172 LTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
++L++ + L +P L +TTL + N + +P LR L ++SGN
Sbjct: 39 NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTL---EVSGN 91
Query: 232 KLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGR 291
+L + L L+ L LP L L + N LT +P
Sbjct: 92 QLTS-LPVLPPGLLELSIFSNPLTHLP-ALP------SGLCKLWIFGNQLTS-LPVLPPG 142
Query: 292 LTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN 351
L L +S N L +P S L +L ++NQ+ S+P+ L+ L +S N
Sbjct: 143 LQEL---SVSDNQL-ASLPALPSELCKLW---AYNNQLT-SLPMLPSGLQEL---SVSDN 191
Query: 352 KLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMN 411
+L +P +L L + L L LK L ++ N+L S+P
Sbjct: 192 QLAS-LPTLPSELYKLWAYNNRLTSLPALPSG-------LKELIVSGNRLT-SLPVLPSE 242
Query: 412 CFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTY 471
L+ L++S N LT +P L L +
Sbjct: 243 ---LKELMVSGNRLT-SLPMLPSGL---LSLSVY-------------------------- 269
Query: 472 VNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFL 531
N+L+ +P + + S V L N L + +I
Sbjct: 270 ----RNQLT---------------RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310
Query: 532 EYLDLSYNNIP 542
Sbjct: 311 PGYSGPIIRFD 321
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 4e-35
Identities = 65/339 (19%), Positives = 125/339 (36%), Gaps = 47/339 (13%)
Query: 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRS 159
++ + I +N++ ++P+ +L+ L++S N LT ++P L L +
Sbjct: 60 PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114
Query: 160 NLNGPIPSTLGHL--------------TRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205
+L +PS L L L L +S N L +P L +L +
Sbjct: 115 HLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLW---AY 169
Query: 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI 265
+NQ+ +P+ L+ L +S N+L + + +L L + + L P
Sbjct: 170 NNQLT-SLPMLPSGLQEL---SVSDNQLAS-LPTLPSELYKLWAYNNRLTSL----PALP 220
Query: 266 GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLF 325
L L ++ N LT +P L L +S N L +P S L L+ ++
Sbjct: 221 S---GLKELIVSGNRLTS-LPVLPSELKEL---MVSGNRLTS-LPMLPSGLLSLS---VY 269
Query: 326 SNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTF 385
NQ+ +P + +L + V++ N L + ++T+ + + S
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328
Query: 386 GHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNS 424
L ++ L + E +N+
Sbjct: 329 RETRAL--HLAAADWLVPAREGEPAPADRWHMFGQEDNA 365
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-34
Identities = 68/350 (19%), Positives = 122/350 (34%), Gaps = 54/350 (15%)
Query: 244 LTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHN 303
L++ L+ LP + ++ L + NNLT +P+ L +L ++S N
Sbjct: 39 NNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPALPPELRTL---EVSGN 91
Query: 304 SLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGD 363
L +P L L+ + L ++ + N+L +P
Sbjct: 92 QL-TSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTS-LP---VL 139
Query: 364 LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423
L L +S NQL+ +P+ L L +N+L S+P LQ L +S+N
Sbjct: 140 PPGLQELSVSDNQLAS-LPALPSELCKL---WAYNNQLT-SLPMLPSG---LQELSVSDN 191
Query: 424 SLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQI 483
L +P+ L L + L + P L + NRL+ +
Sbjct: 192 QLA-SLPTLPSELYKLWAYNNRLTSLPA-LPSG------------LKELIVSGNRLT-SL 236
Query: 484 PMTIGGLSKLS------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLS 537
P+ L +L S+P L ++ N L +P + + ++L
Sbjct: 237 PVLPSELKELMVSGNRLTSLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLE 292
Query: 538 YNNIPGTVPEFINRIMPADLV--PMINFSISPTPSPASPQQEPNKVMILL 585
N + + + I A P+I F ++ +P + L
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-27
Identities = 56/265 (21%), Positives = 97/265 (36%), Gaps = 48/265 (18%)
Query: 291 RLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSS 350
+ L++ + L +P L +TTL + N + S+P L L ++S
Sbjct: 38 LNNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTL---EVSG 90
Query: 351 NKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELM 410
N+L +P+ L L L L L L + N+L S+P
Sbjct: 91 NQLTS-LPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP 141
Query: 411 NCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLT 470
LQ L +S+N L +P+ L L + L + P L
Sbjct: 142 G---LQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSL-----PMLPSG--------LQ 184
Query: 471 YVNHQFNRLSGQIPMTIGGLSKLS------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLE 524
++ N+L+ +P L KL S+P+ L + +S N L ++P+
Sbjct: 185 ELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG---LKELIVSGNRL-TSLPVL 239
Query: 525 MGKIIFLEYLDLSYNNIPGTVPEFI 549
+ L+ L +S N + ++P
Sbjct: 240 PSE---LKELMVSGNRL-TSLPMLP 260
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 2e-40
Identities = 88/457 (19%), Positives = 155/457 (33%), Gaps = 58/457 (12%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNN 150
D + L S S+I+ + I L+ L L + NN+T T+ L N
Sbjct: 32 ATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD--LSQNTN 86
Query: 151 LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQIN 210
L L + L + + LT+L+ L+ +N L + LT L N +
Sbjct: 87 LTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLT 140
Query: 211 GCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLEN 270
+D + L E+D NK + + T L +LD S +++ ++ +
Sbjct: 141 ---EIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL---DVSQNKL 192
Query: 271 LVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330
L L+ + NN+T L + L+ LD S N L I ++ LT+LT N +
Sbjct: 193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246
Query: 331 GSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL 390
L + L L + L + + T LIY + + H T
Sbjct: 247 ---ELDVSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQ 298
Query: 391 LKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450
L L+ + + + L L L L+N LT + + + + L L I
Sbjct: 299 LYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352
Query: 451 GMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNV 510
+ L + +P + L+ +V ++ + G
Sbjct: 353 DFSSVGKIPA--------LNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPM- 402
Query: 511 TLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547
I G + +++ N+ P
Sbjct: 403 ---------NIEPGDGGVYDQATNTITWENLSTDNPA 430
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-35
Identities = 80/417 (19%), Positives = 141/417 (33%), Gaps = 61/417 (14%)
Query: 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNS 184
+ + T L L L S++ + + LT L+ L +SN+
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75
Query: 185 LVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDL 244
+ L T LT L SN++ LD L L ++ NKL +
Sbjct: 76 ITT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQN 126
Query: 245 TNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNS 304
L L+ + L+ ++ + L L ++N + + T L+ LD S N
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181
Query: 305 LFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364
+ +S L L +N I L + L +D SSNKL + + L
Sbjct: 182 I---TELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTE---IDVTPL 232
Query: 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNS 424
T L Y D S+N L+ + L+ L L+ L I L + L
Sbjct: 233 TQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCR 286
Query: 425 LTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP 484
+ ++ + + L+ LD I+ + Q+ K L Y+ L+ ++
Sbjct: 287 KIKEL--DVTHNTQLYLLDCQAAGITELDLSQNPK---------LVYLYLNNTELT-ELD 334
Query: 485 MTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ + + L +++ N + +GKI L +
Sbjct: 335 ----------------VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQT 373
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 4e-40
Identities = 67/295 (22%), Positives = 124/295 (42%), Gaps = 21/295 (7%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P ++ +LDL +N +T NL NL L L + ++ P L +L
Sbjct: 46 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL-NG 235
L LS N L +P + L L++ N+I F L + V+L N L +
Sbjct: 104 RLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Query: 236 PI-ASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTS 294
I + L+ + ++ ++ +PQ G +L L L+ N +T ++L L +
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNN 217
Query: 295 LSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL 353
L+ L LS NS+ + +L++ L L L +N++ +P G+ + + ++ V + +N +
Sbjct: 218 LAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Query: 354 EG------PIPLTIGDLTNLIYLDLSLNQLSGPI--PSTFGHLTLLKFLNLNSNK 400
P + + L N + PSTF + + + L + K
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-37
Identities = 68/284 (23%), Positives = 118/284 (41%), Gaps = 18/284 (6%)
Query: 175 LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
L ++ S L +P L L L +N+I DF NL++L + L NK++
Sbjct: 33 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 235 GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTS 294
L L L LS QL LP+++ + L L ++ N +T S L
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 295 LSDLDLSHNSL-FGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNK 352
+ ++L N L I + +L+ +++ I +IP G+ +L + + NK
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNK 203
Query: 353 LEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNC 412
+ ++ L NL L LS N +S + + L+ L+LN+NKL +P L +
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262
Query: 413 FSLQSLILSNNSLTG------RIPSEIRNLSYLHELDLSLNFIS 450
+Q + L NN+++ P + + L N +
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 63/305 (20%), Positives = 113/305 (37%), Gaps = 40/305 (13%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+L + S L +P+++ + L L N +T L +L L L +N +
Sbjct: 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 306 FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLT 365
P + L +L L L NQ+ +P + + L+ + + N++ L
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145
Query: 366 NLIYLDLSLNQL-SGPIPS-TFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423
+I ++L N L S I + F + L ++ + + +IP L SL L L N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGN 202
Query: 424 SLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQ 482
+T ++ + + L+ L +L LS N IS + L ++ N+L
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPH-----LRELHLNNNKLV-- 253
Query: 483 IPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSL------DGTIPLEMGKIIFLEYLDL 536
VP + + + V L NN++ D P K + L
Sbjct: 254 -------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300
Query: 537 SYNNI 541
N +
Sbjct: 301 FSNPV 305
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-37
Identities = 73/379 (19%), Positives = 141/379 (37%), Gaps = 35/379 (9%)
Query: 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRS 159
++ + ++I+ + L LQ L + I + L++L+ L L +
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 160 NLNGPIPSTLGHLTRLSILDLSSNSLVGPI--PFTLGHLTQLTTLKLFSNQINGCIPLD- 216
L L +L L+ +L G + LT L L L N I P
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 217 FGNLRHLKEVDLSGNKLN----------GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIG 266
F N+R +DL+ NK+ T+ L+++ D++ L
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 267 YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL-------------DLSHNSLFGPIPPTL 313
++ L L+ N + + + + H + P T
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 314 SHL--TRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYL 370
L + + T L ++I ++ + + +LE++ ++ N++ LT+L+ L
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 371 DLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSEL-MNCFSLQSLILSNNSLTGRI 429
+LS N L F +L L+ L+L+ N + ++ + + +L+ L L N L +
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SV 386
Query: 430 PSEI-RNLSYLHELDLSLN 447
P I L+ L ++ L N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 82/430 (19%), Positives = 151/430 (35%), Gaps = 82/430 (19%)
Query: 127 LQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPS-TLGHLTRLSILDLSSNSL 185
+ +DLS N++ + L +L L + + I + T L+ L IL L N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 186 VGPIPFTLGHLTQLTTLKLFSNQING-CIPLD-FGNLRHLKEVDLSGNKLNG-PIASTIG 242
+ L L L L ++G + + F L L+ + L N + AS
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 243 DLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSH 302
++ + LDL+ ++ + L+ + T RL+S++ D++
Sbjct: 152 NMRRFHVLDLTFNKVK--------SICEEDLLNFQGKHFTLL------RLSSITLQDMNE 197
Query: 303 NSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG 362
L T +TTL L N S+ + ++ L +
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI----------QSLILS 247
Query: 363 DLTNLIYLDLSLNQLSGPIPSTFGHL--TLLKFLNLNSNKLNGSIPSELMNCFS-LQSLI 419
+ N+ P TF L + +K +L+ +K+ ++ + + F+ L+ L
Sbjct: 248 NSYNMG-SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLT 305
Query: 420 LSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNR 478
L+ N + +I L++L +L+LS NF+ SI R+ F
Sbjct: 306 LAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG------------SIDSRM-------FEN 345
Query: 479 LSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEM-GKIIFLEYLDLS 537
L L L LS N + + + + L+ L L
Sbjct: 346 LDK--------LEVLD-----------------LSYNHI-RALGDQSFLGLPNLKELALD 379
Query: 538 YNNIPGTVPE 547
N + +VP+
Sbjct: 380 TNQLK-SVPD 388
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 1e-18
Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 17/198 (8%)
Query: 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGH------------ 171
+ + LDLS N ++ + + ++ + + + S+ GH
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 172 ---LTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDL 228
+ + DLS + + + H T L L L N+IN F L HL +++L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 229 SGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPS 287
S N L + +L L LDLS + L + L NL L+L+ N L
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDG 389
Query: 288 TLGRLTSLSDLDLSHNSL 305
RLTSL + L N
Sbjct: 390 IFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 5e-15
Identities = 51/261 (19%), Positives = 83/261 (31%), Gaps = 66/261 (25%)
Query: 293 TSLSDLDLSHNSLFGPIPPT-LSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN 351
++ +DLS NS+ + T S L L LK+ I
Sbjct: 30 AHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNN--------------- 73
Query: 352 KLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMN 411
T L++LI L L NQ F L L+ L L L+G++ S N
Sbjct: 74 --------TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG--N 123
Query: 412 CF----SLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRD 466
F SL+ L+L +N++ P+ N+ H LDL+ N + + + +
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLL---NFQG 179
Query: 467 RLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMG 526
+ T + L ++ L
Sbjct: 180 KHFTLLRLSSITLQ------------------------------DMNEYWLGWEKCGNPF 209
Query: 527 KIIFLEYLDLSYNNIPGTVPE 547
K + LDLS N ++ +
Sbjct: 210 KNTSITTLDLSGNGFKESMAK 230
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-36
Identities = 62/308 (20%), Positives = 113/308 (36%), Gaps = 23/308 (7%)
Query: 127 LQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLV 186
L+++ S L +P ++ + L L ++++ L L L L +N +
Sbjct: 35 LRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 187 GPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTN 246
L +L L + N + + L E+ + N++ L N
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVE---IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRN 148
Query: 247 LNSLDLSSKQL-SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+N +++ L + L YL ++ LTG IP L +L++L L HN +
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKI 205
Query: 306 FGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGD 363
I L ++L L L NQI I G L L + + +NKL +P + D
Sbjct: 206 -QAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSR-VPAGLPD 262
Query: 364 LTNLIYLDLSLNQLSGPIPSTFGHLTL------LKFLNLNSNKL-NGSIPSELMNCF-SL 415
L L + L N ++ + F + ++L +N + + C
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322
Query: 416 QSLILSNN 423
++ N
Sbjct: 323 LAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-36
Identities = 76/315 (24%), Positives = 131/315 (41%), Gaps = 23/315 (7%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
F C +L + + +P EI +LDL +N+++ L +L L L
Sbjct: 29 FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD 216
+ ++ L +L L +S N LV IP L + L L++ N+I
Sbjct: 86 VNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGV 142
Query: 217 FGNLRHLKEVDLSGNKL-NGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLS 275
F LR++ +++ GN L N D LN L +S +L+G +P+++ E L L
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELH 199
Query: 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIP 334
L+ N + L R + L L L HN + I +LS L L L L +N+++ +P
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS-RVP 257
Query: 335 LGIGNLENLERVDMSSNKLEGPIP-------LTIGDLTNLIYLDLSLNQLSGPI--PSTF 385
G+ +L+ L+ V + +N + + + L N + P+TF
Sbjct: 258 AGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316
Query: 386 GHLTLLKFLNLNSNK 400
+T + + K
Sbjct: 317 RCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-31
Identities = 59/308 (19%), Positives = 109/308 (35%), Gaps = 37/308 (12%)
Query: 175 LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
L ++ S L +P + T L L +N I+ DF L+HL + L NK++
Sbjct: 35 LRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 235 GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTS 294
L L L +S L +P + +LV L ++ N + L +
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148
Query: 295 LSDLDLSHNSL-FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL 353
++ +++ N L P +L L++ ++ IP +
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL---------------- 191
Query: 354 EGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNC 412
L L L N++ + L L L N++ I + L
Sbjct: 192 ----------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFL 240
Query: 413 FSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYV 472
+L+ L L NN L+ R+P+ + +L L + L N I+ + ++ +
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299
Query: 473 NHQFNRLS 480
+ N +
Sbjct: 300 SLFNNPVP 307
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 5e-27
Identities = 62/307 (20%), Positives = 109/307 (35%), Gaps = 45/307 (14%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+L + S L +P+EI + L L N+++ L L L L +N +
Sbjct: 34 HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 306 FGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364
I S L +L L + N + IP + +L + + N++ L
Sbjct: 91 SK-IHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGL 146
Query: 365 TNLIYLDLSLNQL-SGPIPS-TFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSN 422
N+ +++ N L + F L L +L ++ KL IP +L +L L L +
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKL-NYLRISEAKLT-GIPKDLPE--TLNELHLDH 202
Query: 423 NSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSG 481
N + I E S L+ L L N I + + L ++ N+LS
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPT-----LRELHLDNNKLS- 254
Query: 482 QIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEM-------GKIIFLEYL 534
VP+ + + L V L N++ + + K + +
Sbjct: 255 --------------RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGI 299
Query: 535 DLSYNNI 541
L N +
Sbjct: 300 SLFNNPV 306
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 3e-36
Identities = 86/449 (19%), Positives = 156/449 (34%), Gaps = 54/449 (12%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P ++ K IL++S N ++ S + +L+ L L +S + + S L
Sbjct: 15 VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD--FGNLRHLKEVDLSGNKLN 234
LDLS N LV I L L L N + +P+ FGN+ LK + LS L
Sbjct: 73 YLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLE 128
Query: 235 GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTS 294
I L L + + ++ L++ SL++ T + ++
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186
Query: 295 LSDLDLSHNSL-----------FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL--- 340
+ +L +++ F I L +L+ L L + + + + I L
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246
Query: 341 ENLERVDMSSNKLEGPIPLTIGD-----LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLN 395
+ +S+ KL+G + D L L + + P + + + N
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306
Query: 396 LNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPP 455
+ L SNN LT + +L+ L L L +N + ++
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366
Query: 456 QHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVT---L 512
+ L ++ N +S G+CS ++ +
Sbjct: 367 AEMTTQMK----SLQQLDISQNSVSYDEK----------------KGDCSWTKSLLSLNM 406
Query: 513 SNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
S+N L TI + ++ LDL N I
Sbjct: 407 SSNILTDTIFRCLPP--RIKVLDLHSNKI 433
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 7e-33
Identities = 90/463 (19%), Positives = 158/463 (34%), Gaps = 51/463 (11%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNN 150
+L + L I ++ I S +L+ LDLSHN L I N
Sbjct: 35 ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISC--HPTVN 91
Query: 151 LVELYLSRSNLNG-PIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI 209
L L LS + + PI G++++L L LS+ L + HL L +
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE-- 149
Query: 210 NGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG---------- 259
D L+ L I D++ +L +
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209
Query: 260 -PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRL---TSLSDLDLSHNSLFGPI-----P 310
+ ++ L L+LN T + +L T++ +S+ L G +
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269
Query: 311 PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYL 370
+ + L L+ ++ S+ N+ + + + L ++ ++L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329
Query: 371 DLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF----SLQSLILSNNSLT 426
D S N L+ + GHLT L+ L L N+L + ++ SLQ L +S NS++
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELS-KIAEMTTQMKSLQQLDISQNSVS 387
Query: 427 GRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPM 485
L L++S N ++ T + + ++ N++ IP
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCL-------PPRIKVLDLHSNKIK-SIPK 438
Query: 486 TIGGLSKLS---------GSVPSEI-GNCSGLLNVTLSNNSLD 518
+ L L SVP I + L + L N D
Sbjct: 439 QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 42/250 (16%), Positives = 86/250 (34%), Gaps = 40/250 (16%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
+P + +++S N + I L+ L L +S N++ S F L
Sbjct: 14 HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71
Query: 392 KFLNLNSNKLNG--------------------SIP--SELMNCFSLQSLILSNNSLTGRI 429
++L+L+ NKL ++P E N L+ L LS L
Sbjct: 72 EYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131
Query: 430 PSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGG 489
I +L+ L + P+ + ++ ++ N +F+ + T+
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191
Query: 490 LS-------------KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKII---FLEY 533
L S+ +++ L N+TL+N + + +++ + Y
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251
Query: 534 LDLSYNNIPG 543
+S + G
Sbjct: 252 FSISNVKLQG 261
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 38/207 (18%), Positives = 64/207 (30%), Gaps = 19/207 (9%)
Query: 346 VDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI 405
VD S N L +P + L++S N +S S L+ L+ L ++ N++
Sbjct: 5 VDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 406 PSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIR 465
S L+ L LS+N L I L LDLS N + + F
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQ-- 116
Query: 466 DRLLTYVNHQFNRLSGQIPMTIGGLSKL--------SGSVPSEIGNCSGLLNVTLSNNSL 517
L ++ L + I L+ + + +L
Sbjct: 117 ---LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173
Query: 518 DGTIPLEMGKIIFLEYLDLSYNNIPGT 544
+ + +L +NI
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCV 200
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 29/216 (13%)
Query: 393 FLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGM 452
++ + N L +P +L L +S N ++ S+I +LS L L +S N I +
Sbjct: 4 LVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60
Query: 453 TPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTL 512
FK L Y++ N+L + L ++ L
Sbjct: 61 -DISVFKFNQE-----LEYLDLSHNKLV---------------KISC--HPTVNLKHLDL 97
Query: 513 SNNSLDGTIPL--EMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMINFSISPTPS 570
S N+ D +P+ E G + L++L LS ++ + I + + ++ ++ +
Sbjct: 98 SFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156
Query: 571 PASPQQEPNKVMILLISIIFPIAAFVAFLAHGTLFL 606
P Q + + ++ + L
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-34
Identities = 60/258 (23%), Positives = 97/258 (37%), Gaps = 12/258 (4%)
Query: 98 SCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLS 157
SC +S +P I S + L+L NN+ +L++L L L
Sbjct: 51 SCSNQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107
Query: 158 RSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD- 216
R+++ L L+ L+L N L +L++L L L +N I IP
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166
Query: 217 FGNLRHLKEVDLSG-NKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLS 275
F + L +DL KL L NL L+L + + L L L
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELE 224
Query: 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIP 334
++ N+ P + L+SL L + ++ + I L L L L N ++ S+P
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLS-SLP 282
Query: 335 LGI-GNLENLERVDMSSN 351
+ L L + + N
Sbjct: 283 HDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 4e-33
Identities = 62/231 (26%), Positives = 88/231 (38%), Gaps = 5/231 (2%)
Query: 197 TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256
+ L L N I F +L HL+ + L N + L +LN+L+L
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 257 LSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSH 315
L+ YL L L L N + R+ SL LDL I
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 316 LTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLN 375
L L L L I +P + L LE ++MS N P + L++L L + +
Sbjct: 195 LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252
Query: 376 QLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF-SLQSLILSNNSL 425
Q+S + F L L LNL N L+ S+P +L L L L +N
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 5e-28
Identities = 58/213 (27%), Positives = 88/213 (41%), Gaps = 12/213 (5%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+ + + + LS +PQ I N YL+L NN+ T L L L L NS+
Sbjct: 55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 306 FGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGD 363
I + L L TL+LF N + IP G L L + + +N +E
Sbjct: 112 -RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169
Query: 364 LTNLIYLDLS-LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSN 422
+ +L+ LDL L +L F L LK+LNL + +P+ L L+ L +S
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSG 227
Query: 423 NSLTGRIPSE-IRNLSYLHELDLSLNFISGMTP 454
N I LS L +L + + +S +
Sbjct: 228 NHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIER 259
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-23
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 86 NGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIPSK 144
N IR +++ F+ +L + ++ + ++ IPS LSKL+ L L +N + +IPS
Sbjct: 109 NSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSY 165
Query: 145 -LGNLNNLVELYLSRSNLNGPIPS-TLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202
+ +L+ L L I L L L+L ++ +P L L L L
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEEL 223
Query: 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLP 262
++ N P F L LK++ + ++++ + L +L L+L+ LS LP
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LP 282
Query: 263 QEI-GYLENLVYLSLNVNNL 281
++ L LV L L+ N
Sbjct: 283 HDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 44/212 (20%), Positives = 67/212 (31%), Gaps = 51/212 (24%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
+P GI N +++ N ++ T L +L L L N + F L L
Sbjct: 68 EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 392 KFLNLNSNKLNGSIPSE-LMNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFI 449
L L N L IPS L+ L L NN + IPS + L LDL
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLG---- 179
Query: 450 SGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLN 509
+ +L GL L
Sbjct: 180 -------------------------ELKKLEYISEGAFEGLFNLK--------------Y 200
Query: 510 VTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ L ++ +P + ++ LE L++S N+
Sbjct: 201 LNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF 230
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 96 NFSCFPNLESFRIWYSNISGNIPSE-IGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
N + LE + ++ I LS L+ L + ++ ++ + L +LVEL
Sbjct: 213 NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLV 186
L+ +NL+ L L L L N
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 4e-34
Identities = 58/243 (23%), Positives = 91/243 (37%), Gaps = 10/243 (4%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLN--GPIPSTLGHLTR 174
+P+ I S L+L N L L L +L LS + L+ G + T
Sbjct: 22 VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79
Query: 175 LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKL 233
L LDLS N ++ + L QL L + + F +LR+L +D+S
Sbjct: 80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 234 NGPIASTIGDLTNLNSLDLSS-KQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRL 292
L++L L ++ LP L NL +L L+ L P+ L
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 293 TSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI--GNLENLERVDMSS 350
+SL L++SHN+ F L L L N I + +L ++++
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQ 257
Query: 351 NKL 353
N
Sbjct: 258 NDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 69/276 (25%), Positives = 106/276 (38%), Gaps = 31/276 (11%)
Query: 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG 235
+ + +S L +P + + T L+L SN++ F L L ++ LS N
Sbjct: 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN---- 62
Query: 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSL 295
L+ S+ G +L YL L+ N + + S L L
Sbjct: 63 ----------GLSFKGCCSQSDFG--------TTSLKYLDLSFNGVIT-MSSNFLGLEQL 103
Query: 296 SDLDLSHNSLFG-PIPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNK- 352
LD H++L L L L + GI L +LE + M+ N
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSF 162
Query: 353 LEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNC 412
E +P +L NL +LDLS QL P+ F L+ L+ LN++ N
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Query: 413 FSLQSLILSNNSLTGRIPSEIRNL-SYLHELDLSLN 447
SLQ L S N + E+++ S L L+L+ N
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 55/236 (23%), Positives = 82/236 (34%), Gaps = 6/236 (2%)
Query: 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLT--GTIPSKLGNLNNLVELYLS 157
+ + + + L++L L LS N L+ G +L L LS
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 158 RSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPF-TLGHLTQLTTLKLFSNQINGCIPLD 216
+ + + S L +L LD ++L F L L L +
Sbjct: 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 217 FGNLRHLKEVDLSGNK-LNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLS 275
F L L+ + ++GN + +L NL LDLS QL P L +L L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHL-TRLTTLKLFSNQIN 330
++ NN L SL LD S N + L H + L L L N
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 64/301 (21%), Positives = 98/301 (32%), Gaps = 53/301 (17%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+ + +SK L+ +P I + L L N L +LT L+ L LS N L
Sbjct: 8 SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 306 --FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG-PIPLTIG 362
G + T L L L N + ++ LE LE +D + L+
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123
Query: 363 DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSN 422
L NLIYLD+S F L+ L+ L + N + ++
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI------------- 170
Query: 423 NSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQ 482
L L LDLS + + P F S L +N N
Sbjct: 171 ----------FTELRNLTFLDLSQCQLEQL-SPTAFNSLSS-----LQVLNMSHNNFFSL 214
Query: 483 IPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEM--GKIIFLEYLDLSYNN 540
L+ L +L+ S N + T + L +L+L+ N+
Sbjct: 215 DTFPYKCLNSLQ------------VLD--YSLNHIM-TSKKQELQHFPSSLAFLNLTQND 259
Query: 541 I 541
Sbjct: 260 F 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 9e-20
Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 3/162 (1%)
Query: 96 NFSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
NF LE +SN+ + +L L LD+SH + L++L L
Sbjct: 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155
Query: 155 YLSRSNLNGPIPS-TLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCI 213
++ ++ L L+ LDLS L P L+ L L + N
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Query: 214 PLDFGNLRHLKEVDLSGNKLNGPIASTIGDL-TNLNSLDLSS 254
+ L L+ +D S N + + ++L L+L+
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 40/208 (19%), Positives = 66/208 (31%), Gaps = 49/208 (23%)
Query: 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401
+ + +S L +P I ++ L+L N+L F LT L L+L+SN L
Sbjct: 8 SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 402 N--GSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFK 459
+ G SL+ L LS N + + S L L LD + + M+ F
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123
Query: 460 QKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDG 519
+ L Y++ + I +GL +
Sbjct: 124 SLRN-----LIYLDISHTHTR---------------VAFNGI--FNGLSS---------- 151
Query: 520 TIPLEMGKIIFLEYLDLSYNNIPGTVPE 547
LE L ++ N+
Sbjct: 152 -----------LEVLKMAGNSFQENFLP 168
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-33
Identities = 61/304 (20%), Positives = 114/304 (37%), Gaps = 54/304 (17%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
SC N+ +P I + ++L+L N + + +L +L L L
Sbjct: 39 CSCSNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQL 95
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD 216
SR+++ L L+ L+L N +LTT+
Sbjct: 96 SRNHIRTIEIGAFNGLANLNTLELFDN--------------RLTTIP----------NGA 131
Query: 217 FGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSL 276
F L LKE+ L N + + + +L LDL
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG----------------------- 168
Query: 277 NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLG 336
+ L+ L++L L+L+ +L P L+ L +L L L N ++ +I G
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLS-AIRPG 225
Query: 337 I-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLN 395
L +L+++ M ++++ +L +L+ ++L+ N L+ F L L+ ++
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285
Query: 396 LNSN 399
L+ N
Sbjct: 286 LHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-33
Identities = 63/231 (27%), Positives = 92/231 (39%), Gaps = 5/231 (2%)
Query: 197 TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256
T L L NQI F +LRHL+ + LS N + L NLN+L+L +
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 257 LSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSH 315
L+ YL L L L N + R+ SL LDL I
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 316 LTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLN 375
L+ L L L + IP + L L+ +D+S N L P + L +L L + +
Sbjct: 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 376 QLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF-SLQSLILSNNSL 425
Q+ + F +L L +NL N L +P +L L+ + L +N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 10/212 (4%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+ + K L +P I N L+L+ N + ++ L L L LS N +
Sbjct: 44 QFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 306 FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDL 364
+ L L TL+LF N++ +IP G L L+ + + +N +E +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159
Query: 365 TNLIYLDLS-LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423
+L LDL L +LS F L+ L++LNL L IP+ L L L LS N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGN 217
Query: 424 SLTGRIPSEI-RNLSYLHELDLSLNFISGMTP 454
L+ I + L +L +L + + I +
Sbjct: 218 HLS-AIRPGSFQGLMHLQKLWMIQSQIQVIER 248
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 4e-23
Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 10/200 (5%)
Query: 86 NGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIPSK 144
N IR ++ F+ NL + ++ + ++ IP+ LSKL+ L L +N + +IPS
Sbjct: 98 NHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSY 154
Query: 145 L-GNLNNLVELYLSRSNLNGPIPS-TLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202
+ +L L L I L+ L L+L+ +L IP L L +L L
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDEL 212
Query: 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLP 262
L N ++ P F L HL+++ + +++ + +L +L ++L+ L+ LP
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LP 271
Query: 263 QEI-GYLENLVYLSLNVNNL 281
++ L +L + L+ N
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 50/212 (23%), Positives = 75/212 (35%), Gaps = 51/212 (24%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
+P GI N +++ N+++ + L +L L LS N + F L L
Sbjct: 57 EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 392 KFLNLNSNKLNGSIPSELMNCF-SLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFI 449
L L N+L +IP+ L+ L L NN + IPS + L LDL
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLG---- 168
Query: 450 SGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLN 509
+ RLS GLS L
Sbjct: 169 -------------------------ELKRLSYISEGAFEGLSNLR--------------Y 189
Query: 510 VTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ L+ +L IP + +I L+ LDLS N++
Sbjct: 190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 96 NFSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
N + L+ + +++S I L LQ L + + + + NL +LVE+
Sbjct: 202 NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLV 186
L+ +NL L L + L N
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 21/171 (12%)
Query: 391 LKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450
+ L +P + + + L L N + + ++L +L L LS N I
Sbjct: 45 FSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 451 GMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLS---------GSVPSEI 501
+ F + L + NRL+ LSKL S+PS
Sbjct: 102 TI-EIGAFNGLAN-----LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA 155
Query: 502 -GNCSGLLNVTLSNNSLDGTIPLEM-GKIIFLEYLDLSYNNIPGTVPEFIN 550
L + L I + L YL+L+ N+ +P
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP 205
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-32
Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 25/296 (8%)
Query: 143 SKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202
L N +++ +SN+ T L ++ L + + +L L L
Sbjct: 13 FPDPALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGL 68
Query: 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLP 262
+L NQI PL NL + E++LSGN L S I L ++ +LDL+S Q++ P
Sbjct: 69 ELKDNQITDLAPL--KNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP 124
Query: 263 QEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTL 322
+ L NL L L++N +T P L LT+L L + + + + P L++L++LTTL
Sbjct: 125 --LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTL 178
Query: 323 KLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIP 382
K N+I+ I + +L NL V + +N++ PL + +NL + L+ ++
Sbjct: 179 KADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTITNQPV 234
Query: 383 STFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSY 438
+L + + S P+ + + + ++ +LT + S I N+SY
Sbjct: 235 FYNNNLVVPNVVKGPSGAP--IAPATISD-----NGTYASPNLTWNLTSFINNVSY 283
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-27
Identities = 70/286 (24%), Positives = 110/286 (38%), Gaps = 20/286 (6%)
Query: 95 FNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
F N SN++ L + L +T TI + LNNL+ L
Sbjct: 13 FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGL 68
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP 214
L + + P L +LT+++ L+LS N L + L + TL L S QI P
Sbjct: 69 ELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP 124
Query: 215 LDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYL 274
L L +L+ + L N++ S + LTNL L + + Q+S + L L L
Sbjct: 125 L--AGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTL 178
Query: 275 SLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIP 334
+ N ++ S L L +L ++ L +N + P L++ + L + L + I
Sbjct: 179 KADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234
Query: 335 LGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGP 380
NL V P TI D +L+ N S
Sbjct: 235 FYNNNLVVPNVV--KGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 58/274 (21%), Positives = 107/274 (39%), Gaps = 38/274 (13%)
Query: 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327
L N + ++ +N+T T L ++ L + I + +L L L+L N
Sbjct: 18 LANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT-IEG-VQYLNNLIGLELKDN 73
Query: 328 QINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGH 387
QI + + NL + +++S N L+ + L ++ LDL+ Q++ P
Sbjct: 74 QIT-DLA-PLKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDLTSTQITDVTP--LAG 127
Query: 388 LTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLN 447
L+ L+ L L+ N++ + S L +LQ L + N ++ + + NLS L L N
Sbjct: 128 LSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDN 183
Query: 448 FISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGL 507
IS ++P L V+ + N++S S + N S L
Sbjct: 184 KISDISPLASLPN--------LIEVHLKNNQISDV----------------SPLANTSNL 219
Query: 508 LNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
VTL+N ++ ++ +
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 93 DQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLV 152
D + NL+ + + I+ NI S + L+ LQ L + + ++ P L NL+ L
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176
Query: 153 ELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGC 212
L + ++ S L L L + L +N + P L + + L + L + I
Sbjct: 177 TLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232
Query: 213 IPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLV 272
NL N + GP + I T ++ +S L+ L I +
Sbjct: 233 PVFYNNNLVVP-------NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTF 285
Query: 273 YLSLNVNNLTGP 284
S+ N T P
Sbjct: 286 NQSVTFKNTTVP 297
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-32
Identities = 59/290 (20%), Positives = 107/290 (36%), Gaps = 14/290 (4%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
+ + I S +L +IPS G + L LS + + S L L L L+S
Sbjct: 29 SCDRNGICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG-PIASTI 241
N + + L L L L N ++ F L L ++L GN S
Sbjct: 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145
Query: 242 GDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDL 300
LT L L + + + ++ L L L ++ ++L P +L + ++S L L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
Query: 301 SHNSLFGPIPPTLSHLTRLTTLKLFSNQING----SIPLGI----GNLENLERVDMSSNK 352
+ + + + L+L ++ + G V ++
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265
Query: 353 LEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN 402
L + + ++ L+ L+ S NQL F LT L+ + L++N +
Sbjct: 266 LF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 55/266 (20%), Positives = 102/266 (38%), Gaps = 37/266 (13%)
Query: 197 TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256
+ +L L +N+I D +L+ + L+ N +N + L +L LDLS
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 257 LSGPLPQEI-GYLENLVYLSLNVNNLTG-PIPSTLGRLTSLSDLDLSHNSLFGPIPP-TL 313
LS L L +L +L+L N S LT L L + + F I
Sbjct: 112 LSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 314 SHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLS 373
+ LT L L++ ++ + S P ++ + N+ +L L
Sbjct: 171 AGLTFLEELEIDASDLQ-SYE-----------------------PKSLKSIQNVSHLILH 206
Query: 374 LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSEL--------MNCFSLQSLILSNNSL 425
+ Q + + ++ L L L+ SEL + F+ +++ +++ SL
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266
Query: 426 TGRIPSEIRNLSYLHELDLSLNFISG 451
++ + +S L EL+ S N +
Sbjct: 267 F-QVMKLLNQISGLLELEFSRNQLKS 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 57/305 (18%), Positives = 102/305 (33%), Gaps = 50/305 (16%)
Query: 243 DLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSH 302
SS L+ +P + E + L L+ N +T S L R +L L L+
Sbjct: 29 SCDRNGICKGSSGSLNS-IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85
Query: 303 NSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLT 360
N + I + S L L L L N + ++ L +L +++ N + +
Sbjct: 86 NGINT-IEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143
Query: 361 I-GDLTNLIYLDLSLNQLSGPIPS-TFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQS 417
+ LT L L + I F LT L+ L ++++ L S + L + ++
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSH 202
Query: 418 LILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQF 476
LIL + S + L+L +
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH----------------------- 238
Query: 477 NRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDL 536
S+LS + + NV +++ SL + + +I L L+
Sbjct: 239 -------------FSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEF 284
Query: 537 SYNNI 541
S N +
Sbjct: 285 SRNQL 289
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 4e-21
Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 15/221 (6%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIP--SKLGNLNNLVE 153
FS +LE + Y+ +S N+ S LS L L+L N T+ S +L L
Sbjct: 96 FSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153
Query: 154 LYLSRSNLNGPIPS-TLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGC 212
L + + I LT L L++ ++ L P +L + ++ L L Q
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213
Query: 213 IPLDFGNLRHLKEVDLSGNKLNGPIASTI--------GDLTNLNSLDLSSKQLSGPLPQE 264
+ + ++ ++L L+ S + ++ ++ + L + +
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272
Query: 265 IGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+ + L+ L + N L RLTSL + L N
Sbjct: 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 12/208 (5%)
Query: 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSEL-MNCFSLQSLILSNN 423
+ LDLS N+++ S L+ L L SN +N +I + + SL+ L LS N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110
Query: 424 SLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQ 482
L+ + S + LS L L+L N + F ++ + F ++ +
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN-MDTFTKIQRK 168
Query: 483 IPMTIGGLSKLS------GSVPSEI-GNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLD 535
+ L +L S + + + ++ L + + + +E L+
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228
Query: 536 LSYNNIPGTVPEFINRIMPADLVPMINF 563
L ++ ++ L+ F
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTF 256
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-31
Identities = 80/454 (17%), Positives = 156/454 (34%), Gaps = 43/454 (9%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P ++ + + L LS N+++ + L+ L L LS + + L
Sbjct: 46 VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPL--DFGNLRHLKEVDLSGNKL- 233
LD+S N L I + L L L N + +P+ +FGNL L + LS K
Sbjct: 104 YLDVSHNRLQN-ISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR 159
Query: 234 NGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLT 293
+ + LDL S + G + + N L L + + +
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVN 218
Query: 294 SLSDLDLSHNSL-------FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL---ENL 343
+L L LS+ L L+ L + L + + + +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278
Query: 344 ERVDMSSNKLEGPIPLTIGD-----LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNS 398
E +++ + + I L +L+ + + + + L+
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338
Query: 399 NKLNGSIPSELMNCF----SLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454
+ P M C S L + N T + L L L L N +
Sbjct: 339 SDT----PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394
Query: 455 ----PQHFKQKHSIRDRLLTYVNHQFNRL-SGQIPMTIGGLS--KLSGSVPSEIGNCSGL 507
++ ++ L + +H ++R + + + LS L+GSV + +
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV 452
Query: 508 LNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ L NN + +IP ++ + L+ L+++ N +
Sbjct: 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 6e-24
Identities = 81/462 (17%), Positives = 152/462 (32%), Gaps = 81/462 (17%)
Query: 118 PSEIGALSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+I LS+L++L LSHN + ++ + +L L +S + L I + L
Sbjct: 69 MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-ISC--CPMASLR 124
Query: 177 ILDLSSNSL-VGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN- 234
LDLS N V P+ G+LT+LT L L + + LD + HL + + ++
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSY 181
Query: 235 ----GPIASTIGDLTNLNSLDLSSKQL-SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTL 289
G S T + L L S + + L +L ++ +N+ T
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241
Query: 290 GR-------------------------------LTSLSDLDLSHNSLFGPIPP-----TL 313
+ L++ + ++ I +
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301
Query: 314 SHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLS 373
+ L L + + S + +S + + ++ +L+ +
Sbjct: 302 TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT 361
Query: 374 LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLT----GRI 429
N + + L L+ L L N L + + ++ SL + SL
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAY 420
Query: 430 PSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRL---LTYVNHQFNRLSGQIPMT 486
+ L+LS N ++G S+ L + ++ NR+ IP
Sbjct: 421 DRTCAWAESILVLNLSSNMLTG-----------SVFRCLPPKVKVLDLHNNRIM-SIPKD 468
Query: 487 IGGLSKLS---------GSVPSEI-GNCSGLLNVTLSNNSLD 518
+ L L SVP + + L + L +N D
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 341 ENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNK 400
E VD S+ L +P + L LS N +S L+ L+ L L+ N+
Sbjct: 31 ELESMVDYSNRNLTH-VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87
Query: 401 LNGSIPSEL-MNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHF 458
+ S+ + + L+ L +S+N L I ++ L LDLS N + + F
Sbjct: 88 IR-SLDFHVFLFNQDLEYLDVSHNRLQN-ISC--CPMASLRHLDLSFNDFDVLPVCKEF 142
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 60/342 (17%), Positives = 111/342 (32%), Gaps = 54/342 (15%)
Query: 129 ILDLSHNNLTGT---IPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL 185
+ +N ++GT S +R+ + L + + S L L+ +L
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL 71
Query: 186 VGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG-PIASTIGDL 244
+P L Q+T L++ N + +P +L +L D N+L+ P
Sbjct: 72 SS-LPDNLP--PQITVLEITQNAL-ISLPELPASLEYL---DACDNRLSTLP-----ELP 119
Query: 245 TNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNS 304
+L LD+ + QL+ LP+ L Y++ + N LT +P L L + +N
Sbjct: 120 ASLKHLDVDNNQLTM-LPELPA---LLEYINADNNQLTM-LPELPTSLEVL---SVRNNQ 171
Query: 305 LFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364
L +P L L + +N + S+P + E
Sbjct: 172 L-TFLPELPESLEALD---VSTNLLE-SLPAVPVRNHHSE-------------------- 206
Query: 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNS 424
I+ N+++ IP L + L N L+ I L +
Sbjct: 207 ETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265
Query: 425 LTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRD 466
+ + N + D + + H+
Sbjct: 266 FSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEH 305
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 6e-28
Identities = 63/382 (16%), Positives = 116/382 (30%), Gaps = 86/382 (22%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGA--LSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
FS + E + N S + +++ L L+ NL+ ++P L + L
Sbjct: 30 FSAWDKWEKQALPGENR-NEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP--PQITVL 85
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP 214
++++ L +P L LD N +L+TL P
Sbjct: 86 EITQNAL-ISLPELPASLEY---LDACDN--------------RLSTL-----------P 116
Query: 215 LDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYL 274
+L+HL D+ N+L LP+ L Y+
Sbjct: 117 ELPASLKHL---DVDNNQLTM-------------------------LPELPA---LLEYI 145
Query: 275 SLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIP 334
+ + N LT +P L L + +N L +P L L + +N + S+P
Sbjct: 146 NADNNQLTM-LPELPTSLEV---LSVRNNQL-TFLPELPESLEALD---VSTNLLE-SLP 196
Query: 335 LGIGNLENLERV----DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL 390
+ E N++ IP I L + L N LS I + T
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255
Query: 391 LKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNL-SYLHELDLSLNF- 448
+ + S N S++ + + + F
Sbjct: 256 QPDYHGPRIYFSMSDGQ--QNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS 313
Query: 449 --ISGMTPPQHFKQKHSIRDRL 468
+ ++ + R+++
Sbjct: 314 AFLDRLSDTVSARNTSGFREQV 335
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-26
Identities = 61/309 (19%), Positives = 108/309 (34%), Gaps = 45/309 (14%)
Query: 236 PIASTIGDLTNLNSLDLSSKQLSGP--LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLT 293
I I + +L+ + E N N + L +
Sbjct: 2 SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--IN 59
Query: 294 SLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL 353
S+L L+ +L +P L ++T L++ N + S+P +LE L D N+L
Sbjct: 60 QFSELQLNRLNL-SSLPDNL--PPQITVLEITQNAL-ISLPELPASLEYL---DACDNRL 112
Query: 354 EGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF 413
+P L +L D+ NQL+ +P L +++N ++N+L +P
Sbjct: 113 ST-LPELPASLKHL---DVDNNQLTM-LPELPALL---EYINADNNQLT-MLPELP---T 160
Query: 414 SLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVN 473
SL+ L + NN LT +P +L LD+S N + + P + HS +
Sbjct: 161 SLEVLSVRNNQLT-FLPELPESL---EALDVSTNLLESL-PAVPVRNHHSEETEIFFRCR 215
Query: 474 HQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEY 533
NR++ +P I + + L +N L I + +
Sbjct: 216 E--NRIT---------------HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258
Query: 534 LDLSYNNIP 542
Sbjct: 259 YHGPRIYFS 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-23
Identities = 49/351 (13%), Positives = 112/351 (31%), Gaps = 30/351 (8%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNN 150
L + P + I + + ++P L+ LD N L+ T+P +L
Sbjct: 70 NLSSLPDNLPPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPELPASL-- 122
Query: 151 LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQIN 210
L + + L +P L + + +N L +P L L+ + +NQ+
Sbjct: 123 -KHLDVDNNQLTM-LPELPALLEYI---NADNNQLTM-LPELPTSLEVLS---VRNNQLT 173
Query: 211 GCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNS----LDLSSKQLSGPLPQEIG 266
+P +L L D+S N L + + + +++ +P+ I
Sbjct: 174 -FLPELPESLEAL---DVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENIL 227
Query: 267 YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFS 326
L+ + L N L+ I +L + T+ D + + +
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVT 285
Query: 327 NQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFG 386
+ + + + + +N + D + Q++ +
Sbjct: 286 AWFPENKQSDVSQIWHAFEHEEHANTFSA-FLDRLSDTVSARNTSGFREQVAAWLEKLSA 344
Query: 387 HLTLLKFLNLNSNKLNGSIPSELMNCFS-LQSLILSNNSLTGRIPSEIRNL 436
L + + S + ++ L+ +L + + G ++ L
Sbjct: 345 SAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGAL 395
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 8e-04
Identities = 25/210 (11%), Positives = 56/210 (26%), Gaps = 13/210 (6%)
Query: 101 PNLESFRIWYSNISGN----IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
+ E I++ N IP I +L + L N L+ I L + +
Sbjct: 203 HHSEETEIFF-RCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD 216
R + + + D + + + + +N + +
Sbjct: 262 PRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLD-R 318
Query: 217 FGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSL 276
+ + + +A+ + L+ L S ++ + L + +L
Sbjct: 319 LSDTVSARNTSGFREQ----VAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNL 374
Query: 277 NVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306
L S L +F
Sbjct: 375 RKTLLV-HQASEGLFDNDTGALLSLGREMF 403
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-28
Identities = 56/298 (18%), Positives = 100/298 (33%), Gaps = 18/298 (6%)
Query: 167 STLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEV 226
+L S+ + L + + ++ I + L ++ ++
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 70
Query: 227 DLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIP 286
L+GNKL + +L NL L L ++ + L+ L LSL N ++
Sbjct: 71 FLNGNKLTD--IKPLTNLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSLEHNGIS--DI 124
Query: 287 STLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERV 346
+ L L L L L +N + LS LT+L TL L NQI+ I + L L+ +
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 180
Query: 347 DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP 406
+S N + L L NL L+L + + +L + + L P
Sbjct: 181 YLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TP 236
Query: 407 SELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSI 464
+ + + + + + F +T P S
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 1e-25
Identities = 53/266 (19%), Positives = 106/266 (39%), Gaps = 18/266 (6%)
Query: 95 FNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
F F + +++ + L+ + + +++++ ++ + L N+ +L
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 70
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP 214
+L+ + L I L +L L L L N + L L +L +L L N I+
Sbjct: 71 FLNGNKLTD-I-KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING 126
Query: 215 LDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYL 274
L +L L+ + L NK+ + + LT L++L L Q+S + L L L
Sbjct: 127 LV--HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNL 180
Query: 275 SLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIP 334
L+ N+++ L L +L L+L S+L T+K + P
Sbjct: 181 YLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TP 236
Query: 335 LGIGNLENLERVDMSSNKLEGPIPLT 360
I + + E+ ++ + E ++
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVS 262
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 97.1 bits (241), Expect = 5e-21
Identities = 51/256 (19%), Positives = 94/256 (36%), Gaps = 36/256 (14%)
Query: 287 STLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERV 346
+L S+ + + L + + ++ I S+ GI L N+ ++
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 70
Query: 347 DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP 406
++ NKL PL +L NL +L L N++ S+ L LK L+L N ++ I
Sbjct: 71 FLNGNKLTDIKPL--TNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGIS-DIN 125
Query: 407 SELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRD 466
L++ L+SL L NN +T + + L+ L L L N IS + P +
Sbjct: 126 G-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVPLAGLTK------ 176
Query: 467 RLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMG 526
L + N +S + L+ L L + L +
Sbjct: 177 --LQNLYLSKNHIS-----DLRALAGLKN-----------LDVLELFSQECLNKPINHQS 218
Query: 527 KIIFLEYLDLSYNNIP 542
++ + + ++
Sbjct: 219 NLVVPNTVKNTDGSLV 234
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 89.8 bits (222), Expect = 1e-18
Identities = 52/262 (19%), Positives = 90/262 (34%), Gaps = 18/262 (6%)
Query: 96 NFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155
PN+ + + ++ +I + L L L L N + L +L L L
Sbjct: 60 GIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLS 115
Query: 156 LSR---SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGC 212
L S++NG L HL +L L L +N + L LT+L TL L NQI+
Sbjct: 116 LEHNGISDING-----LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI 168
Query: 213 IPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLV 272
+PL L L+ + LS N ++ + L NL+ L+L S++ L
Sbjct: 169 VPLA--GLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224
Query: 273 YLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGS 332
+ +L P + ++ + + K +
Sbjct: 225 TVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQ 284
Query: 333 IPLGIGNLENLERVDMSSNKLE 354
+ + + K+E
Sbjct: 285 PLKEVYTVSYDVDGTVIKTKVE 306
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 81.3 bits (200), Expect = 4e-16
Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 36/223 (16%)
Query: 319 LTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLS 378
+ S I P + ++ + + +L ++ + + + +
Sbjct: 1 MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56
Query: 379 GPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSY 438
+L + L LN NKL I L N +L L L N + + S +++L
Sbjct: 57 --SVQGIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKK 110
Query: 439 LHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVP 498
L L L N IS + H Q L + N+++ I LS+L+
Sbjct: 111 LKSLSLEHNGISDINGLVHLPQ--------LESLYLGNNKIT-----DITVLSRLTK--- 154
Query: 499 SEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
L ++L +N + +PL + L+ L LS N+I
Sbjct: 155 --------LDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 187
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 56/215 (26%), Positives = 86/215 (40%), Gaps = 17/215 (7%)
Query: 238 ASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSD 297
+ + + ++ + L+ LP ++ ++ L L+ N L +TL T L+
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQ 59
Query: 298 LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357
L+L L L L TL L NQ+ S+PL L L +D+S N+L +
Sbjct: 60 LNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-L 115
Query: 358 PLTIGD-LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF--- 413
PL L L L L N+L P L+ L+L +N L +P+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA---GLLNGL 171
Query: 414 -SLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLN 447
+L +L+L NSL IP L L N
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 53/202 (26%), Positives = 74/202 (36%), Gaps = 9/202 (4%)
Query: 223 LKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282
EV+ L + + + L LS L + L L+L+ LT
Sbjct: 12 HLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLE 341
G L L LDLSHN L +P L LT L + N++ S+PLG L
Sbjct: 69 --KLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401
L+ + + N+L+ P + L L L+ N L+ L L L L N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 402 NGSIPSELMNCFSLQSLILSNN 423
+IP L L N
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 60/207 (28%), Positives = 86/207 (41%), Gaps = 11/207 (5%)
Query: 147 NLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS 206
+ + +E+ + NL +P L +IL LS N L TL T+LT L L
Sbjct: 8 KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI- 265
++ + + G L L +DLS N+L + L L LD+S +L+ LP
Sbjct: 65 AELTK-LQV-DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGAL 120
Query: 266 GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKL 324
L L L L N L P L L L L++N+L +P L+ L L TL L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLL 179
Query: 325 FSNQINGSIPLGIGNLENLERVDMSSN 351
N + +IP G L + N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 8e-22
Identities = 56/189 (29%), Positives = 76/189 (40%), Gaps = 10/189 (5%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P ++ IL LS N L + L L +L L R+ L G L L
Sbjct: 25 LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLG 80
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNG 235
LDLS N L +P L LT L + N++ +PL L L+E+ L GN+L
Sbjct: 81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138
Query: 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTS 294
+ L L L++ L+ LP + LENL L L N+L IP
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHL 196
Query: 295 LSDLDLSHN 303
L L N
Sbjct: 197 LPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 6e-19
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 6/181 (3%)
Query: 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRS 159
+ + + + + + ++L L+L LT + G L L L LS +
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHN 87
Query: 160 NLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FG 218
L +P L L++LD+S N L L L +L L L N++ +P
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145
Query: 219 NLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNV 278
L+++ L+ N L A + L NL++L L L +P+ L + L+
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204
Query: 279 N 279
N
Sbjct: 205 N 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 44/207 (21%), Positives = 66/207 (31%), Gaps = 58/207 (28%)
Query: 339 NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNS 398
+ + V+ L +P + + L LS N L +T T L LNL+
Sbjct: 8 KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 399 NKLNGSIP--SELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQ 456
+L + L L +L LS+N L +P + L L LD+S N ++ + P
Sbjct: 65 AELT-KLQVDGTLPV---LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLG 118
Query: 457 HFKQKHSIRDRL--LTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSN 514
L L + + N L TL
Sbjct: 119 AL-------RGLGELQELYLKGNELK------------------------------TLPP 141
Query: 515 NSLDGTIPLEMGKIIFLEYLDLSYNNI 541
L T LE L L+ NN+
Sbjct: 142 GLLTPTP--------KLEKLSLANNNL 160
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 9e-28
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 7/207 (3%)
Query: 223 LKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282
+ + L GN+++ A++ NL L L S L+ L L L L+ N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 283 GPIPS-TLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGI-GN 339
+ T L L L L L + P L L L L N + ++P +
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD 151
Query: 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSN 399
L NL + + N++ L +L L L N+++ P F L L L L +N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 400 KLNGSIPSELM-NCFSLQSLILSNNSL 425
L+ ++P+E + +LQ L L++N
Sbjct: 212 NLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 56/212 (26%), Positives = 81/212 (38%), Gaps = 11/212 (5%)
Query: 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSK-LGNLNNLVELYLSR 158
+ + + IS + A L IL L N L I + L L +L LS
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89
Query: 159 SNLNGPI----PSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP 214
N + P+T L RL L L L P L L L L N + +P
Sbjct: 90 ---NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LP 145
Query: 215 LD-FGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVY 273
D F +L +L + L GN+++ L +L+ L L +++ P L L+
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 274 LSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
L L NNL+ L L +L L L+ N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 6e-19
Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 5/161 (3%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIPSK-LGNLNNLVEL 154
F+ LE + + ++ L +L L L L + L L L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134
Query: 155 YLSRSNLNGPIPS-TLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCI 213
YL + L +P T L L+ L L N + L L L L N++
Sbjct: 135 YLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 214 PLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSS 254
P F +L L + L N L+ + L L L L+
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 6e-17
Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 33/237 (13%)
Query: 309 IPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNL 367
+P + + L N+I+ +P NL + + SN L L L
Sbjct: 26 VPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 368 IYLDLSLN-QLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQSLILSNNSL 425
LDLS N QL P+TF L L L+L+ L + +LQ L L +N+L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141
Query: 426 TGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP 484
+P + R+L L L L N IS + P + F+ HS L + NR++
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHS-----LDRLLLHQNRVA---- 190
Query: 485 MTIGGLSKLSGSVPSEI-GNCSGLLNVTLSNNSLDGTIPLE-MGKIIFLEYLDLSYN 539
V + L+ + L N+L +P E + + L+YL L+ N
Sbjct: 191 -----------HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 47/217 (21%), Positives = 77/217 (35%), Gaps = 35/217 (16%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
++P+GI +R+ + N++ + NL L L N L+ + F L LL
Sbjct: 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 392 KFLNLNSNKLNGSIPSE-LMNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFI 449
+ L+L+ N S+ L +L L L + + R L+ L L L N +
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141
Query: 450 SGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLN 509
+ P F+ + LT++ NR+S GL L
Sbjct: 142 QAL-PDDTFRDLGN-----LTHLFLHGNRISSVPERAFRGLHSLD--------------R 181
Query: 510 VTLSNNSLDGTIPLEMGKIIF-----LEYLDLSYNNI 541
+ L N + + F L L L NN+
Sbjct: 182 LLLHQNRVA-HVHPH----AFRDLGRLMTLYLFANNL 213
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155
F L+ + + + +P + L L L L N ++ L++L L
Sbjct: 125 FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183
Query: 156 LSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
L ++ + P L RL L L +N+L L L L L+L N
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIPSK-LGNLNNLVEL 154
F NL + + IS ++P L L L L N + + +L L+ L
Sbjct: 149 FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTL 206
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLV 186
YL +NL+ L L L L L+ N V
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 50/267 (18%), Positives = 83/267 (31%), Gaps = 19/267 (7%)
Query: 175 LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
L +D ++ L +LT L + L+E+ L ++
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 235 GPIASTIGDLT--NLNSLDLSSKQLSGPLPQ----EIGYLENLVYLSLNVNNLTGPIPST 288
G + + T +LN L+L + + + L LS+ +
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 289 LGRLTSLSDLDLSHNSLFGPI-------PPTLSHLTRLTTLKLFSNQINGSIPLGIGNLE 341
+ +LS LDLS N G P L L +G
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228
Query: 342 NLERVDMSSNKLEG-PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNK 400
L+ +D+S N L + + L L+LS L L L+L+ N+
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNR 285
Query: 401 LNGSIPSELMNCFSLQSLILSNNSLTG 427
L+ PS + +L L N
Sbjct: 286 LD-RNPSPD-ELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 53/268 (19%), Positives = 89/268 (33%), Gaps = 19/268 (7%)
Query: 127 LQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLV 186
L+ +D + T K +L L + + ++ L L L + +
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 187 GPIPFTLG--HLTQLTTLKLFSNQINGCIP----LDFGNLRHLKEVDLSGNKLNGPIAST 240
G P L L L L + L LK + ++
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 241 IGDLTNLNSLDLSSKQLSGPL-------PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLT 293
+ L++LDLS G P + L+ L + + +G +
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228
Query: 294 SLSDLDLSHNSLFG-PIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNK 352
L LDLSHNSL P+ ++L +L L + +P G+ L +D+S N+
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNR 285
Query: 353 LEGPIPLTIGDLTNLIYLDLSLNQLSGP 380
L+ P +L + L L N
Sbjct: 286 LDR-NPS-PDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 1e-18
Identities = 53/299 (17%), Positives = 88/299 (29%), Gaps = 43/299 (14%)
Query: 266 GYLENLVYLSLNVNNLTGPIP-STLGRLTSLSDLDLSHNSLFGPIPPTLSHL---TRLTT 321
G +L YL V+ + + + SL L + + I + + L
Sbjct: 40 GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99
Query: 322 LKLFSNQINGSIPLGIGNL--ENLERVDMSSNKLEGPIP----LTIGDLTNLIYLDLSLN 375
L L + ++ G+ P + +L +++ + L L L ++
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 376 QLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF----SLQSLILSNN---SLTGR 428
L L+L+ N G C +LQ L L N + +G
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 429 IPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIG 488
+ L LDLS N + L +N F L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ-----LNSLNLSFTGLK-------- 266
Query: 489 GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547
VP + + L + LS N LD P ++ + L L N E
Sbjct: 267 -------QVPKGLP--AKLSVLDLSYNRLD-RNPSP-DELPQVGNLSLKGNPF--LDSE 312
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 1e-17
Identities = 49/274 (17%), Positives = 84/274 (30%), Gaps = 38/274 (13%)
Query: 199 LTTLKLFSNQINGCIPLD----FGNLRHLKEVDLSGNKLNGPIA-STIGDLTNLNSLDLS 253
+ K + C+ +G R L+ + + + I +L L +
Sbjct: 17 FSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVR 76
Query: 254 SKQLSGPLPQEIGYLEN---LVYLSLNVNNLTGPIPSTLGRLT--SLSDLDLSHNSLFGP 308
+ ++ + + L L+L +TG P L T L+ L+L + S
Sbjct: 77 AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW--- 133
Query: 309 IPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLI 368
+ L L L+ + ++ + L
Sbjct: 134 -ATRDAWLAELQQWLK----------------PGLKVLSIAQAHSLNFSCEQVRVFPALS 176
Query: 369 YLDLSLNQLSGPI-------PSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILS 421
LDLS N G P F L +L N +G + LQ L LS
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236
Query: 422 NNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTP 454
+NSL + S L+ L+LS + +
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 54/285 (18%), Positives = 103/285 (36%), Gaps = 23/285 (8%)
Query: 167 STLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEV 226
+ +L S+ + L + + ++ I + L ++ ++
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 73
Query: 227 DLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIP 286
L+GNKL + +L NL L L ++ + L+ L LSL N ++
Sbjct: 74 FLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS--DI 127
Query: 287 STLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERV 346
+ L L L L L +N + LS LT+L TL L NQI+ I + L L+ +
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 183
Query: 347 DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP 406
+S N + L L NL L+L + + +L + + L P
Sbjct: 184 YLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTP 239
Query: 407 SELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG 451
+ + + + + P +S++ +++
Sbjct: 240 EIISDDGDYEKPNVKWHL-----PEFTNEVSFIFYQPVTIGKAKA 279
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 58/253 (22%), Positives = 105/253 (41%), Gaps = 18/253 (7%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
A ++ +L ++T + LN++ ++ + S++ + +L ++ L L+
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNG 77
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIG 242
N L P L +L L L L N++ L +L+ LK + L N ++ + +
Sbjct: 78 NKLTDIKP--LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS--DINGLV 131
Query: 243 DLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSH 302
L L SL L + +++ + L L LSL N ++ +P L LT L +L LS
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 303 NSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG 362
N + + L+ L L L+LFS + NL V + L P I
Sbjct: 188 NHISD-LRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE--IIS 243
Query: 363 DLTNLIYLDLSLN 375
D + ++ +
Sbjct: 244 DDGDYEKPNVKWH 256
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 3e-20
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 16/235 (6%)
Query: 96 NFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155
+ +++ S+I ++ I L + L L+ N LT P L NL NL L+
Sbjct: 41 TQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96
Query: 156 LSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPL 215
L + + S+L L +L L L N + L HL QL +L L +N+I L
Sbjct: 97 LDENKVK--DLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITVL 152
Query: 216 DFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLS 275
L L + L N+++ + LT L +L LS +S + + L+NL L
Sbjct: 153 S--RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLE 206
Query: 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330
L + L + + + SL P +S + +
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE--IISDDGDYEKPNVKWHLPE 259
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 51/255 (20%), Positives = 95/255 (37%), Gaps = 36/255 (14%)
Query: 287 STLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERV 346
+ +L S+ + + L + + ++ I S+ GI L N+ ++
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 73
Query: 347 DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP 406
++ NKL PL +L NL +L L N++ S+ L LK L+L N ++ I
Sbjct: 74 FLNGNKLTDIKPL--ANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGIS-DIN 128
Query: 407 SELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRD 466
L++ L+SL L NN +T + + L+ L L L N IS + P +
Sbjct: 129 G-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVPLAGLTK------ 179
Query: 467 RLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMG 526
L + N +S + L+ L L + L +
Sbjct: 180 --LQNLYLSKNHIS-----DLRALAGL-----------KNLDVLELFSQECLNKPINHQS 221
Query: 527 KIIFLEYLDLSYNNI 541
++ + + ++
Sbjct: 222 NLVVPNTVKNTDGSL 236
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-24
Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 12/218 (5%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
IP + + LDLS N L + L L LSR + L+ LS
Sbjct: 22 IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKL-N 234
L L+ N + L+ L L + + G+L+ LKE++++ N + +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138
Query: 235 GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVY----LSLNVNNLTGPIPSTLG 290
+ +LTNL LDLSS ++ ++ L + L L++N + I
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF 197
Query: 291 RLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSN 327
+ L +L L N L +P LT L + L +N
Sbjct: 198 KEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 8e-22
Identities = 56/232 (24%), Positives = 83/232 (35%), Gaps = 34/232 (14%)
Query: 223 LKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNL 281
K +DLS N L + + L LDLS ++ + L +L L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI 88
Query: 282 TGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGIGNL 340
L+SL L +L + + HL L L + N I S L
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ-SFKL----- 141
Query: 341 ENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKF----LNL 396
P +LTNL +LDLS N++ + L + L+L
Sbjct: 142 -----------------PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 397 NSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLN 447
+ N +N I L+ L L N L +P I L+ L ++ L N
Sbjct: 185 SLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 26/214 (12%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
IP + + + +D+S N L + L LDLS ++ + L+ L
Sbjct: 21 KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 392 KFLNLNSNKLNGSIPSEL-MNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFI 449
L L N + S+ SLQ L+ +L + + +L L EL+++ N I
Sbjct: 79 STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136
Query: 450 SGMTPPQHFKQKHSIRDRL--LTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGL 507
P++F L L +++ N++ + L ++
Sbjct: 137 QSFKLPEYF-------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL----------N 179
Query: 508 LNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
L++ LS N ++ I K I L+ L L N +
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL 212
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 31/162 (19%)
Query: 293 TSLSDLDLSHNSLFGPIPPT-LSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN 351
S +LDLS N L + L L L +I +I G
Sbjct: 28 FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQ------------ 73
Query: 352 KLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSEL-M 410
L++L L L+ N + F L+ L+ L L S+ +
Sbjct: 74 -----------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIG 121
Query: 411 NCFSLQSLILSNNSLTGRIPSE--IRNLSYLHELDLSLNFIS 450
+ +L+ L +++N + NL+ L LDLS N I
Sbjct: 122 HLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ 162
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 37/199 (18%), Positives = 59/199 (29%), Gaps = 50/199 (25%)
Query: 345 RVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGS 404
IP + + LDLS N L +F L+ L+L+ ++ +
Sbjct: 11 TYQCMELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-T 66
Query: 405 IPSEL-MNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFKQKH 462
I + L +LIL+ N + + LS L +L ++ +
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLK 124
Query: 463 SIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIP 522
+ L +N N + S S L N
Sbjct: 125 T-----LKELNVAHNLIQ---------------SFKLP-EYFSNLTN------------- 150
Query: 523 LEMGKIIFLEYLDLSYNNI 541
LE+LDLS N I
Sbjct: 151 --------LEHLDLSSNKI 161
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 8e-24
Identities = 32/184 (17%), Positives = 70/184 (38%), Gaps = 10/184 (5%)
Query: 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327
+ + L ++ T ++ SL+ + L++ ++ + + + + L + +
Sbjct: 22 FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD-LTG-IEYAHNIKDLTINNI 76
Query: 328 QINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGH 387
P+ L NLER+ + + + LT+L LD+S + I +
Sbjct: 77 HATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134
Query: 388 LTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLN 447
L + ++L+ N I L L+SL + + + I + L++L
Sbjct: 135 LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQ 191
Query: 448 FISG 451
I G
Sbjct: 192 TIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 8e-22
Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 7/183 (3%)
Query: 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN 160
+++ S ++ L + L++ N+T + +N+ +L ++ +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77
Query: 161 LNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNL 220
+ + L+ L L + + L LT LT L + + + I L
Sbjct: 78 ATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 221 RHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN 280
+ +DLS N I + L L SL++ + I L L
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192
Query: 281 LTG 283
+ G
Sbjct: 193 IGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 1e-21
Identities = 32/194 (16%), Positives = 70/194 (36%), Gaps = 14/194 (7%)
Query: 111 SNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLG 170
S + NIP L ++ + +N+L + L+ N+ +
Sbjct: 11 SQDNVNIPDS--TFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDLTG--IE 63
Query: 171 HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSG 230
+ + L +++ P + L+ L L++ + + L L +D+S
Sbjct: 64 YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
Query: 231 NKLNGPIASTIGDLTNLNSLDLSS-KQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTL 289
+ + I + I L +NS+DLS ++ +P + L L L++ + + +
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG--I 177
Query: 290 GRLTSLSDLDLSHN 303
L+ L
Sbjct: 178 EDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-21
Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 36/221 (16%)
Query: 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIG 266
+Q N IP + L + I T + +L + L++ ++ I
Sbjct: 11 SQDNVNIPDS--TFKAYLNGLLGQSS-TANI--TEAQMNSLTYITLANINVTDL--TGIE 63
Query: 267 YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFS 326
Y N+ L++N + T + + +S L+ L L++
Sbjct: 64 YAHNIKDLTINNIHAT----------------NYNP----------ISGLSNLERLRIMG 97
Query: 327 NQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFG 386
+ + L +L +D+S + + I I L + +DLS N I
Sbjct: 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLK 156
Query: 387 HLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTG 427
L LK LN+ + ++ + + L L + ++ G
Sbjct: 157 TLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 8e-21
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 96 NFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155
N++ I + + N + I LS L+ L + ++T L L +L L
Sbjct: 61 GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118
Query: 156 LSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPL 215
+S S + I + + L +++ +DLS N + I L L +L +L + + ++ +
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGI 177
Query: 216 DFGNLRHLKEVDLSGNKLNG 235
+ + L ++ + G
Sbjct: 178 E--DFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 15/176 (8%)
Query: 319 LTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLS 378
+ + + + +L + +++ + + N+ L ++ +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGI--EYAHNIKDLTINNIHAT 79
Query: 379 GPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSY 438
+ L+ L+ L + + L SL L +S+++ I ++I L
Sbjct: 80 NY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137
Query: 439 LHELDLSLN-FISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKL 493
++ +DLS N I+ + P + + L +N QF+ + I KL
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPE--------LKSLNIQFDGVHDYRG--IEDFPKL 183
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 33/156 (21%)
Query: 388 LTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLH---ELDL 444
L + +++ + L + L+N ++T ++ + Y H +L +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVT-----DLTGIEYAHNIKDLTI 73
Query: 445 SLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNC 504
+ + P L + ++ + GL+ L+
Sbjct: 74 NNIHATNYNPISGLSN--------LERLRIMGKDVTSDKIPNLSGLTSLT---------- 115
Query: 505 SGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNN 540
+ +S+++ D +I ++ + + +DLSYN
Sbjct: 116 ----LLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 82/408 (20%), Positives = 144/408 (35%), Gaps = 59/408 (14%)
Query: 102 NLESFRIWYSNISGNIPSEIG-ALSKLQILDLSHNNLTGT----IPSKLGNLNNLVELYL 156
+++S I +S +E+ L + Q++ L LT I S L L EL L
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 157 SRSNLNGP----IPSTLGHL-TRLSILDLSSNSL----VGPIPFTLGHLTQLTTLKLFSN 207
+ L + L ++ L L + L G + TL L L L L N
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123
Query: 208 QIN--GCIPLDFGNLR---HLKEVDLSGNKLN----GPIASTIGDLTNLNSLDLSSKQLS 258
+ G L G L L+++ L L+ P+AS + + L +S+ ++
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183
Query: 259 GPLPQEIGYL-----ENLVYLSLNVNNLT----GPIPSTLGRLTSLSDLDLSHNSLFGP- 308
+ + L L L +T + + SL +L L N L
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243
Query: 309 ----IPPTLSHLTRLTTLKLFSNQIN----GSIPLGIGNLENLERVDMSSNKLEGPIPLT 360
P L +RL TL ++ I G + + E+L+ + ++ N+L
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303
Query: 361 IGDL-----TNLIYLDLSLNQLSG----PIPSTFGHLTLLKFLNLNSNKLNGSIPSEL-- 409
+ + L L + + S L L +++N+L + EL
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363
Query: 410 ---MNCFSLQSLILSNNSLT----GRIPSEIRNLSYLHELDLSLNFIS 450
L+ L L++ ++ + + + L ELDLS N +
Sbjct: 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 3e-20
Identities = 76/372 (20%), Positives = 122/372 (32%), Gaps = 66/372 (17%)
Query: 125 SKLQILDLSHNNLTGT-IPSKLGNLNNLVELYLSRSNLN----GPIPSTLGHLTRLSILD 179
+Q LD+ L+ L L + L L I S L L+ L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 180 LSSNSL----VGPIPFTLGHL-TQLTTLKLFSNQIN--GCIPL--DFGNLRHLKEVDLSG 230
L SN L V + L ++ L L + + GC L L L+E+ LS
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 231 NKLNGPIASTIGDL-----TNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPI 285
N L + + L L L LS + +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA------------------- 163
Query: 286 PSTLGRLTSLSDLDLSHNSL----FGPIPPTLSHLT-RLTTLKLFSNQIN----GSIPLG 336
S L +L +S+N + + L +L LKL S + +
Sbjct: 164 -SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222
Query: 337 IGNLENLERVDMSSNKL--EGPIPLTIGDL---TNLIYLDLSLNQLSGP----IPSTFGH 387
+ + +L + + SNKL G L G L + L L + ++ +
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282
Query: 388 LTLLKFLNLNSNKLNGS----IPSELMNC-FSLQSLILSNNSLTGR----IPSEIRNLSY 438
LK L+L N+L + L+ L+SL + + S T S + +
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342
Query: 439 LHELDLSLNFIS 450
L EL +S N +
Sbjct: 343 LLELQISNNRLE 354
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 77/379 (20%), Positives = 127/379 (33%), Gaps = 64/379 (16%)
Query: 112 NISGNIPSEIGALS----------KLQILDLSHNNLTGT----IPSKLGNLNNLVELYLS 157
N+ N ++G K+Q L L + LTG + S L L L EL+LS
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 158 RSNLNGPIPSTLGHL-----TRLSILDLSSNSL----VGPIPFTLGHLTQLTTLKLFSNQ 208
+ L L RL L L SL P+ L L + +N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 209 IN--GCIPLDFG---NLRHLKEVDLSGNKLN----GPIASTIGDLTNLNSLDLSSKQLSG 259
IN G L G + L+ + L + + + +L L L S +L
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
Query: 260 PLPQEIG-----YLENLVYLSLNVNNLTGP----IPSTLGRLTSLSDLDLSHNSLFGP-- 308
E+ L L + +T + L SL +L L+ N L
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301
Query: 309 --IPPTLSH-LTRLTTLKLFSNQING----SIPLGIGNLENLERVDMSSNKLEGPIPLTI 361
+ TL +L +L + S + L + +S+N+LE +
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361
Query: 362 GDL-----TNLIYLDLSLNQLS----GPIPSTFGHLTLLKFLNLNSNKLNGSIPSEL--- 409
+ L L L+ +S + +T L+ L+L++N L + +L
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421
Query: 410 --MNCFSLQSLILSNNSLT 426
L+ L+L + +
Sbjct: 422 VRQPGCLLEQLVLYDIYWS 440
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 7e-22
Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 14/221 (6%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+ +++ +P ++ N + L + L L +++S N +
Sbjct: 10 SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 306 FGPIPP-TLSHLTRLTTLKLF-SNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIG 362
I S+L +L +++ +N + I NL NL+ + +S+ ++ +
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125
Query: 363 DLTNLIYLDLSLN-QLSGPIPSTFGHLT-LLKFLNLNSNKLNGSIPSELMNCFSLQSLIL 420
+ LD+ N + ++F L+ L LN N + I + N L L L
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNL 184
Query: 421 S-NNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFK 459
S NN+L +P+++ S LD+S I P +
Sbjct: 185 SDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLE 223
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 4e-19
Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 14/239 (5%)
Query: 72 NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEI-GALSKLQIL 130
+L + I + +R + + FS F +LE I +++ I +++ L KL +
Sbjct: 27 DLPRNAIELRFVL-TKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84
Query: 131 DLSHNNLTGTIPSK-LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPI 189
+ N I + NL NL L +S + + H + +LD+ N + I
Sbjct: 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144
Query: 190 P---FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTN 246
F G + L L N I F + + N L +
Sbjct: 145 ERNSFV-GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203
Query: 247 LNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNS 304
LD+S ++ LP L+ L S L +L +L + L++ S
Sbjct: 204 PVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 4e-18
Identities = 54/272 (19%), Positives = 87/272 (31%), Gaps = 35/272 (12%)
Query: 274 LSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGS 332
+ +T IPS L + +L L I S L +++ N +
Sbjct: 14 FLCQESKVTE-IPSDL--PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 333 IPLGI-GNLENLERVDMS-SNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL 390
I + NL L + + +N L P +L NL YL +S + H
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129
Query: 391 LKFLNLNSNKLNGSIPSELMN--CFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLS-LN 447
L++ N +I F L L+ N + I + N + L EL+LS N
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188
Query: 448 FISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGL 507
+ + P F ++ R+ + L KL
Sbjct: 189 NLEEL-PNDVFHGASGPVILDISR-----TRIHSLPSYGLENLKKLR------------- 229
Query: 508 LNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYN 539
S +L LE K++ L L+Y
Sbjct: 230 ---ARSTYNLKKLPTLE--KLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 34/203 (16%), Positives = 58/203 (28%), Gaps = 49/203 (24%)
Query: 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401
+ +K+ IP + N I L L +L F L+ + ++ N +
Sbjct: 10 SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 402 NGSIPSE-LMNCFSLQSLILSN-NSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHF 458
I ++ N L + + N+L I E +NL L L +S I
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-------- 117
Query: 459 KQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLD 518
+ D ++ + I + T+ NS
Sbjct: 118 ----HLPDVH-------KIHSLQKVLLDIQDNINIH----------------TIERNSFV 150
Query: 519 GTIPLEMGKIIFLEYLDLSYNNI 541
G L L+ N I
Sbjct: 151 GLSFE-------SVILWLNKNGI 166
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 8e-22
Identities = 52/248 (20%), Positives = 85/248 (34%), Gaps = 22/248 (8%)
Query: 191 FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSL 250
F L L + + L ++ + + + + + TNL L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ--SLAGMQFFTNLKEL 68
Query: 251 DLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIP 310
LS Q+S P + L L LS+N N L LS L L +N L
Sbjct: 69 HLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNNELRDTDS 123
Query: 311 PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYL 370
L HL L L + +N++ SI +G L LE +D+ N++ LT L + ++
Sbjct: 124 --LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWI 177
Query: 371 DLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIP 430
DL+ + L + + + P + N S + P
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWEL-----P 230
Query: 431 SEIRNLSY 438
+SY
Sbjct: 231 VYTDEVSY 238
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 3e-20
Identities = 47/236 (19%), Positives = 82/236 (34%), Gaps = 17/236 (7%)
Query: 119 SEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178
L+ +L ++T + L+ + SN+ + + T L L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKEL 68
Query: 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIA 238
LS N + P L LT+L L + N++ + L L L N+L
Sbjct: 69 HLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRDT-- 121
Query: 239 STIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL 298
++ L NL L + + +L + +G+L L L L+ N +T L RL ++ +
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWI 177
Query: 299 DLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354
DL+ L T+K + P I N + +
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELPV 231
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 13/174 (7%)
Query: 287 STLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERV 346
L + +L S+ + L+ + ++ I S+ G+ NL+ +
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKEL 68
Query: 347 DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP 406
+S N++ PL DLT L L ++ N+L + L L L++N+L
Sbjct: 69 HLSHNQISDLSPL--KDLTKLEELSVNRNRLK--NLNGIPSACL-SRLFLDNNEL--RDT 121
Query: 407 SELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQ 460
L++ +L+ L + NN L + LS L LDL N I+ K+
Sbjct: 122 DSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGGLTRLKK 173
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 5e-21
Identities = 59/182 (32%), Positives = 80/182 (43%), Gaps = 6/182 (3%)
Query: 173 TRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGN 231
LDL SN L LT+L L L N++ +P F L++L+ + ++ N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95
Query: 232 KLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLG 290
KL L NL L L QL LP + L L YLSL N L
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 291 RLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMS 349
+LTSL +L L +N L LT L TLKL +NQ+ +P G +LE L+ + +
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQ 213
Query: 350 SN 351
N
Sbjct: 214 EN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 56/199 (28%), Positives = 79/199 (39%), Gaps = 7/199 (3%)
Query: 131 DLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP 190
D S LT IPS + +L L + L+ LT+L +L L+ N L
Sbjct: 22 DCSSKKLT-AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 191 FTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNS 249
L L TL + N++ +P+ F L +L E+ L N+L LT L
Sbjct: 79 GIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 250 LDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGP 308
L L +L LP+ + L +L L L N L +LT L L L +N L
Sbjct: 138 LSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 309 IPPTLSHLTRLTTLKLFSN 327
L +L L+L N
Sbjct: 197 PEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 57/162 (35%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 293 TSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSN 351
LDL N L LT+L L L N++ ++P GI L+NLE + ++ N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95
Query: 352 KLEGPIPLTIGD-LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELM 410
KL+ +P+ + D L NL L L NQL P F LT L +L+L N+L S+P
Sbjct: 96 KLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK--- 150
Query: 411 NCF----SLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLN 447
F SL+ L L NN L R+P L+ L L L N
Sbjct: 151 GVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 4e-19
Identities = 52/188 (27%), Positives = 67/188 (35%), Gaps = 4/188 (2%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
IPS I A + LDL N L+ L L LYL+ + L L L
Sbjct: 31 IPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNG 235
L ++ N L L L L+L NQ+ +P F +L L + L N+L
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQS 147
Query: 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSL 295
LT+L L L + QL L L L L+ N L L L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 296 SDLDLSHN 303
L L N
Sbjct: 208 KMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
+IP I + +++D+ SNKL LT L L L+ N+L F L L
Sbjct: 30 AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 392 KFLNLNSNKLNGSIPSELMNC-FSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLN 447
+ L + NKL ++P + + +L L L N L +P + +L+ L L L N
Sbjct: 88 ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN 143
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 96.4 bits (239), Expect = 8e-21
Identities = 54/276 (19%), Positives = 92/276 (33%), Gaps = 12/276 (4%)
Query: 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNG 163
W + N PS + L L L+ T ++ E L +
Sbjct: 282 PLSVEWRTPDGRNRPSHV-WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC 340
Query: 164 PIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHL 223
+L +LS + L +L L+ + I L L L
Sbjct: 341 W-CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL 398
Query: 224 KEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG 283
+ + D LD + ++ L L +LT
Sbjct: 399 LYEKETLQYFST---LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT- 454
Query: 284 PIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENL 343
+ L +L ++ LDLSHN L +PP L+ L L L+ N + ++ G+ NL L
Sbjct: 455 -VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GVANLPRL 510
Query: 344 ERVDMSSNKLEG-PIPLTIGDLTNLIYLDLSLNQLS 378
+ + + +N+L+ + L+ L+L N L
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 6e-17
Identities = 42/252 (16%), Positives = 79/252 (31%), Gaps = 26/252 (10%)
Query: 222 HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNL 281
L L+ + L + ++ E L L+V
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC-WCRDSATDEQLFRCELSVEKS 361
Query: 282 TGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLE 341
T + S L L +L+ + L+ + + L + +
Sbjct: 362 T-VLQSELESCKELQELEPENK------WCLLTIILLMRALDPLLYEKET-----LQYFS 409
Query: 342 NLERVD--------MSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKF 393
L+ VD +K + + ++ L L+ L+ + L L+
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTH 467
Query: 394 LNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT 453
L+L+ N+L ++P L L+ L S+N+L + + NL L EL L N +
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSA 524
Query: 454 PPQHFKQKHSIR 465
Q +
Sbjct: 525 AIQPLVSCPRLV 536
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 75.2 bits (184), Expect = 3e-14
Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 15/159 (9%)
Query: 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRS 159
S + +++L L+H +LT + L L + L LS +
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHN 473
Query: 160 NLNGPIPSTLGHLTRLSILDLSSN---SLVGPIPFTLGHLTQLTTLKLFSNQING-CIPL 215
L +P L L L +L S N ++ G + +L +L L L +N++
Sbjct: 474 RLRA-LPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNRLQQSAAIQ 527
Query: 216 DFGNLRHLKEVDLSGN---KLNGPIASTIGDLTNLNSLD 251
+ L ++L GN + G L +++S+
Sbjct: 528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 2e-12
Identities = 43/273 (15%), Positives = 80/273 (29%), Gaps = 29/273 (10%)
Query: 245 TNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNS 304
+L + L+ + ++ L + L +LS
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEK 360
Query: 305 LFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364
+ L L L+ + +I I + L+ + L+ L D
Sbjct: 361 ST-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKETLQYFSTLKAVDP 416
Query: 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNS 424
YLD ++ ++ L+L L ++ L + L LS+N
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNR 474
Query: 425 LTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP 484
L +P + L L L S N + + + + L + NRL
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALENVDGVANLPR--------LQELLLCNNRLQ---- 521
Query: 485 MTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSL 517
+ + +C L+ + L NSL
Sbjct: 522 ---------QSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 2e-09
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 96 NFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155
+ + + ++ + +P + AL L++L S N L + + NL L EL
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELL 514
Query: 156 LSRSNLNG-PIPSTLGHLTRLSILDLSSNSLVGP---IPFTLGHLTQLTTL 202
L + L L RL +L+L NSL L ++++
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 5e-07
Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 4/200 (2%)
Query: 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401
+L ++ + + + L ++ L L+ K
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEKS 361
Query: 402 NGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQK 461
+ SEL +C LQ L N I +R L L +L + S + +
Sbjct: 362 T-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-VDPMRA 419
Query: 462 HSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTI 521
+ D ++ + + L+ +V + + ++ LS+N L +
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-AL 478
Query: 522 PLEMGKIIFLEYLDLSYNNI 541
P + + LE L S N +
Sbjct: 479 PPALAALRCLEVLQASDNAL 498
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 4e-06
Identities = 33/221 (14%), Positives = 67/221 (30%), Gaps = 35/221 (15%)
Query: 324 LFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPS 383
+ E L R ++S K + + L L+ I
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL 390
Query: 384 TFGHLTLLKFLN---LNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLH 440
L L + + L P L+S L NS+ +++R
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR------ 444
Query: 441 ELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSE 500
L L+ ++ + + +T+++ NRL ++P
Sbjct: 445 VLHLAHKDLTVLCHLEQLLL--------VTHLDLSHNRLR---------------ALPPA 481
Query: 501 IGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ L + S+N+L+ + + + L+ L L N +
Sbjct: 482 LAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL 520
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 8e-20
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 279 NNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP--TLSHLTRLTTLKLFSNQINGSIPLG 336
L +P +L T+L LDLSHN+L + T + LT L +L L N +N I
Sbjct: 28 QQLPN-VPQSLPSYTAL--LDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSE 82
Query: 337 I-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLN 395
+ NL +D+SSN L DL L L L N + + F + L+ L
Sbjct: 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142
Query: 396 LNSNKLNGSIPSELMNCFS----LQSLILSNNSLTGRIPSEIRNLSYLHELDLSLN 447
L+ N+++ P EL+ + L L LS+N L ++++ L + L L+
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 1e-17
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 10/166 (6%)
Query: 245 TNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHN 303
+ LDLS LS + L NL L L+ N+L + +L LDLS N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 304 SLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTI 361
L + S L L L L++N I + ++ L+++ +S N++ I
Sbjct: 99 HL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 362 GD---LTNLIYLDLSLNQLSGPIPSTFGHLTLLK--FLNLNSNKLN 402
D L L+ LDLS N+L + L L L++N L
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 1e-16
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 13/168 (7%)
Query: 309 IPPTLSHLTRLTTLKLFSNQINGSIPLGI--GNLENLERVDMSSNKLEGPIPLTIGDLTN 366
+P +L T L L N + + L NL + +S N L + N
Sbjct: 33 VPQSLPSYT--ALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 367 LIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQSLILSNNSL 425
L YLDLS N L F L L+ L L +N + + + LQ L LS N +
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI 148
Query: 426 TGRIPSEI----RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLL 469
+ R P E+ L L LDLS N + + P ++ + L
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTDLQKLPAWVKNGL 194
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 1e-16
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 10/161 (6%)
Query: 100 FPNLESFRIWYSNISGNIPSEI--GALSKLQILDLSHNNLTGTIPSK-LGNLNNLVELYL 156
+ ++N+S + +E L+ L L LSHN+L I S+ + NL L L
Sbjct: 38 PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD 216
S ++L+ L L +L L +N +V + QL L L NQI+ P++
Sbjct: 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154
Query: 217 ----FGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLS 253
L L +DLS NKL + + L L
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 2e-16
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 221 RHLKEVDLSGNKLNG-PIASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNV 278
+ +DLS N L+ T LTNL+SL LS L+ + E + NL YL L+
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSS 97
Query: 279 NNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGI 337
N+L L +L L L +N + + + +L L L NQI+ P+ +
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155
Query: 338 ----GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLN 375
L L +D+SSNKL+ + L + L L+
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 14/172 (8%)
Query: 72 NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGA---LSKLQ 128
+L + LS N + ++ + NL S + +++++ I S A + L+
Sbjct: 36 SLPSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS--EAFVPVPNLR 91
Query: 129 ILDLSHNNLTGTIPSK-LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL-- 185
LDLS N+L T+ +L L L L +++ + + +L L LS N +
Sbjct: 92 YLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150
Query: 186 VGPIPFT-LGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKE--VDLSGNKLN 234
L +L L L SN++ D L + + L N L
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 53/205 (25%)
Query: 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPST-FGHLTLLKFLNLNSNK 400
+ S +L +P ++ + LDLS N LS LT L L L+ N
Sbjct: 19 ASNILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75
Query: 401 LNGSIPSE-LMNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHF 458
LN I SE + +L+ L LS+N L + + +L L L L N I + F
Sbjct: 76 LN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVV-DRNAF 132
Query: 459 KQKHSIRDRL--LTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNS 516
+ + L + N++S I +KL
Sbjct: 133 -------EDMAQLQKLYLSQNQISRFPVELIKDGNKLPK--------------------- 164
Query: 517 LDGTIPLEMGKIIFLEYLDLSYNNI 541
L LDLS N +
Sbjct: 165 --------------LMLLDLSSNKL 175
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 47/215 (21%)
Query: 224 KEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG 283
+ +L + A T +L +++ + ++ + I YL N+ YL+L N L
Sbjct: 22 IKANLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLH- 76
Query: 284 PIPSTLG---RLTSLSDLDLSHNSLFGPIPPTL-SHLTRLTTLKLFSNQINGSIPLGIGN 339
+ LT+L+ L L+ N L +P + LT L L L NQ+ S+P G+ +
Sbjct: 77 ----DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD 130
Query: 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSN 399
LTNL YL+L+ NQL F LT L L+L+ N
Sbjct: 131 -----------------------KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 400 KLNGSIPS----ELMNCFSLQSLILSNNSLTGRIP 430
+L S+P +L L+ L L N L +P
Sbjct: 168 QLQ-SLPEGVFDKLTQ---LKDLRLYQNQLK-SVP 197
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 7e-15
Identities = 61/220 (27%), Positives = 91/220 (41%), Gaps = 24/220 (10%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLN--GPIPSTLGHLTR 174
P + A + +L ++T ++ LN++ ++ + S++ I +L
Sbjct: 13 FPDDAFA--ETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSVQGIQ----YLPN 64
Query: 175 LSILDLSSNSLVGPIPFTLG---HLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
+ L L N L + LT LT L L NQ+ F L +LKE+ L N
Sbjct: 65 VRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 232 KLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPS-TL 289
+L LTNL L+L+ QL LP+ + L NL L L+ N L +P
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQS-LPEGVF 177
Query: 290 GRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQ 328
+LT L DL L N L +P LT L + L N
Sbjct: 178 DKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNP 216
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 110 YSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTL 169
+ ++ L+ + + +++++ ++ + L N+ L L + L +
Sbjct: 27 KKKSVTDAVTQNE-LNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKL-----HDI 78
Query: 170 G---HLTRLSILDLSSNSLVGPIPFTLGH-LTQLTTLKLFSNQINGCIPLDFGNLRHLKE 225
LT L+ L L+ N L +P + LT L L L NQ+ F L +L
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 226 VDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGP 284
++L+ N+L LTNL LDLS QL LP+ + L L L L N L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS- 195
Query: 285 IPS-TLGRLTSLSDLDLSHN 303
+P RLTSL + L N
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 5e-17
Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 18/213 (8%)
Query: 244 LTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPS-TLGRLTSLSDLDLSH 302
+ +L L L L N+ + ++++ + S + L+ ++ +++ +
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 303 NSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIP--LGIGNLENLERVDMSSNKLEGPIPL 359
I P L L L L +F+ + P + + + ++++ N IP+
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 360 -TIGDLTN-LIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFS--- 414
L N + L L N + + + T L + LN NK I + F
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDK---DAFGGVY 204
Query: 415 --LQSLILSNNSLTGRIPSEI-RNLSYLHELDL 444
L +S S+T +PS+ +L L +
Sbjct: 205 SGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 42/234 (17%), Positives = 82/234 (35%), Gaps = 33/234 (14%)
Query: 196 LTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI-ASTIGDLTNLNSLDLSS 254
TLKL + F NL ++ + +S + + + + +L+ + +++
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR- 88
Query: 255 KQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG-PIPPTL 313
N NLT P L L L L + + L P +
Sbjct: 89 ----------------------NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 314 SHLTRLTTLKLFSNQINGSIPLGI-GNLEN-LERVDMSSNKLEGPIPLTIGDLTNLIYLD 371
L++ N SIP+ L N + + +N + + T L +
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVY 185
Query: 372 LSLNQLSGPIPS-TFGHL-TLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423
L+ N+ I FG + + L+++ + ++PS+ + L+ LI N
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLE--HLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 33/210 (15%), Positives = 74/210 (35%), Gaps = 10/210 (4%)
Query: 101 PNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSR 158
P+ ++ ++ +++ IPS L + + +S + + S NL+ + + +
Sbjct: 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 159 SNLNGPIPS-TLGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLD 216
+ I L L L L + + L P + L++ N IP++
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 217 -FGNLR-HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI--GYLENLV 272
F L + L N + + T L+++ L+ + + ++ G
Sbjct: 150 AFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208
Query: 273 YLSLNVNNLTGPIPSTLGRLTSLSDLDLSH 302
L ++ ++T L L L +
Sbjct: 209 LLDVSQTSVTALPSKGLEHLKELIARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 33/214 (15%), Positives = 60/214 (28%), Gaps = 22/214 (10%)
Query: 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401
E ++ ++ IP + L L L F +L + + ++ +
Sbjct: 12 QEEDFRVTCKDIQR-IP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 402 NGSIPSEL-MNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLNFISGMTPPQHFK 459
+ S N + + + N I + + L L L + + P
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-PDLTKV 126
Query: 460 QKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSG----------SVPSEIGNCSGLLN 509
I L N + GL + SV N + L
Sbjct: 127 YSTDIFFILEITDNPYMTSIP---VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDA 183
Query: 510 VTLSNNSLDGTIPLEM--GKIIFLEYLDLSYNNI 541
V L+ N I + G LD+S ++
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 9/142 (6%)
Query: 316 LTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSN-KLEGPIPLTIGDLTNLIYLDLS 373
TLKL + +IP NL N+ R+ +S + L+ + +L+ + ++++
Sbjct: 30 PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88
Query: 374 LNQLSGPIPS-TFGHLTLLKFLNLNSNKLNGSIPSE--LMNCFSLQSLILSNNSLTGRIP 430
+ I L LLKFL + + L P + + L +++N IP
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147
Query: 431 SEI-RNL-SYLHELDLSLNFIS 450
+ L + L L N +
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT 169
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 4e-16
Identities = 59/179 (32%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 224 KEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG 283
KEVD G L+ + G + LDL S L+ L L +L+L+ N L
Sbjct: 17 KEVDCQGKSLD---SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 284 PIPSTLGRLTSLSDLDLSHNSLFGPIPPTL-SHLTRLTTLKLFSNQINGSIPLGI-GNLE 341
LT L L L++N L +P + HLT+L L L NQ+ S+P G+ L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLT 131
Query: 342 NLERVDMSSNKLEGPIPLTIGD-LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSN 399
L+ + +++N+L+ IP D LTNL L LS NQL F L L+ + L N
Sbjct: 132 KLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 7e-16
Identities = 51/155 (32%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 298 LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGP 356
LDL L T LT+LT L L NQ+ ++ G+ +L L + +++N+L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 357 IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF--- 413
LT L L L NQL F LT LK L LN+N+L SIP+ F
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPA---GAFDKL 154
Query: 414 -SLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLN 447
+LQ+L LS N L L L + L N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 50/155 (32%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 200 TTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG 259
L L S + F L L ++L N+L A DLT L +L L++ QL+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 260 PLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLT 317
LP + +L L L L N L RLT L +L L+ N L IP LT
Sbjct: 98 -LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLT 155
Query: 318 RLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSN 351
L TL L +NQ+ S+P G L L+ + + N
Sbjct: 156 NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 51/152 (33%), Positives = 63/152 (41%), Gaps = 2/152 (1%)
Query: 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI 237
LDL S L T LT+LT L L NQ+ F +L L + L+ N+L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 238 ASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
LT L+ L L QL LP + L L L LN N L +LT+L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQ 328
L LS N L L +L T+ LF NQ
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 8e-12
Identities = 53/188 (28%), Positives = 74/188 (39%), Gaps = 28/188 (14%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+PS I A + + LDL L T+ +T LT+L+
Sbjct: 29 VPSGIPADT--EKLDLQSTGLA-TLS-----------------------DATFRGLTKLT 62
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
L+L N L LT+L TL L +NQ+ F +L L ++ L GN+L
Sbjct: 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSL 295
+ LT L L L++ QL +P L NL LSL+ N L RL L
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 296 SDLDLSHN 303
+ L N
Sbjct: 182 QTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 10/156 (6%)
Query: 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRSNLN 162
E + + ++ + L+KL L+L +N L T+ + + +L L L L+ + L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96
Query: 163 GPIPSTLGHLTRLSILDLSSNSLVGPIP---FTLGHLTQLTTLKLFSNQINGCIPLD-FG 218
HLT+L L L N L +P F LT+L L+L +NQ+ IP F
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFD--RLTKLKELRLNTNQLQ-SIPAGAFD 152
Query: 219 NLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSS 254
L +L+ + LS N+L L L ++ L
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 5e-09
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
S+P GI + E++D+ S L T LT L +L+L NQL F LT L
Sbjct: 28 SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 392 KFLNLNSNKLNGSIPSELMNCF-SLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLN 447
L L +N+L S+P + + L L L N L +PS + L+ L EL L+ N
Sbjct: 86 GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 8e-16
Identities = 54/321 (16%), Positives = 99/321 (30%), Gaps = 57/321 (17%)
Query: 127 LQILDLSHNNLTG----TIPSKLGNLNNLVELYLSRSNLNGP----IPSTLGHLTRLSIL 178
++ L + +T ++ + L +++ E+ LS + + + + L I
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 179 DLSSNSL----------VGPIPFTLGHLTQLTTLKLFSNQI--NGCIPLD--FGNLRHLK 224
+ S + + L +L T++L N PL L+
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 225 EVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284
+ L N L + I L L ++ K + P L + N L
Sbjct: 126 HLYLHNNGLGPQAGAKIARA--LQELAVNKKAKNAP---------PLRSIICGRNRLENG 174
Query: 285 ----IPSTLGRLTSLSDLDLSHNSLF-----GPIPPTLSHLTRLTTLKLFSNQI--NGSI 333
T L + + N + + L++ L L L N GS
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234
Query: 334 PLG--IGNLENLERVDMSSNKL--EGPIP----LTIGDLTNLIYLDLSLNQLSGPIPSTF 385
L + + NL + ++ L G + + L L L N++ T
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294
Query: 386 G-----HLTLLKFLNLNSNKL 401
+ L FL LN N+
Sbjct: 295 KTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 56/347 (16%), Positives = 94/347 (27%), Gaps = 72/347 (20%)
Query: 145 LGNLNNLVELYLSRSNLNG----PIPSTLGHLTRLSILDLSSNSL----VGPIPFTLGHL 196
+ + + L + + + L + + LS N++ + +
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 197 TQLTTLKLFSNQINGCIPLDFGNLR----------HLKEVDLSGNKLNG----PIASTIG 242
L + LR L V LS N P+ +
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119
Query: 243 DLTNLNSLDLSSKQLSGPLPQEIG-YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLS 301
T L L L + L +I L+ L N L +
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA------------PPLRSIICG 167
Query: 302 HNSLFGP----IPPTLSHLTRLTTLKLFSNQIN-----GSIPLGIGNLENLERVDMSSNK 352
N L T L T+K+ N I + G+ + L+ +D+ N
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227
Query: 353 L--EGPIPL--TIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE 408
G L + NL L L+ LS G ++ + N
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSAR-----GAAAVVDAFSKLENI-------- 274
Query: 409 LMNCFSLQSLILSNNSLTGRIPSEI-----RNLSYLHELDLSLNFIS 450
LQ+L L N + + + L L+L+ N S
Sbjct: 275 -----GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 9e-14
Identities = 46/293 (15%), Positives = 91/293 (31%), Gaps = 57/293 (19%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGT----IPSKLGNLNNLVELYLSRSNLNGP-------- 164
+ + + ++ + LS N + + + + +L S
Sbjct: 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83
Query: 165 --IPSTLGHLTRLSILDLSSNSL----VGPIPFTLGHLTQLTTLKLFSNQI--NGCIPL- 215
+ L +L + LS N+ P+ L T L L L +N + +
Sbjct: 84 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143
Query: 216 ----------DFGNLRHLKEVDLSGNKLNGP----IASTIGDLTNLNSLDLSSKQL---- 257
N L+ + N+L A T L+++ + +
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203
Query: 258 -SGPLPQEIGYLENLVYLSLNVNNLTGP----IPSTLGRLTSLSDLDLSHNSL------- 305
L + + Y + L L L N T + L +L +L L+ L
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263
Query: 306 FGPIPPTLSHLTRLTTLKLFSNQIN--GSIPLG---IGNLENLERVDMSSNKL 353
L ++ L TL+L N+I L + +L ++++ N+
Sbjct: 264 VVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 53/314 (16%), Positives = 100/314 (31%), Gaps = 76/314 (24%)
Query: 271 LVYLSLNVNNLTG----PIPSTLGRLTSLSDLDLSHNSLFGP-----IPPTLSHLTRLTT 321
+ SL ++ +T + + L S+ ++ LS N++ G + ++ L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEI 64
Query: 322 LKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSG-- 379
+ L L + + L + LS N
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQA--------------LLKCPKLHTVRLSDNAFGPTA 110
Query: 380 --PIPSTFGHLTLLKFLNLNSNKL-------------NGSIPSELMNCFSLQSLILSNNS 424
P+ T L+ L L++N L ++ + N L+S+I N
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170
Query: 425 LTGR----IPSEIRNLSYLHELDLSLNFIS--GMTPPQHFKQKHSIRDRL-----LTYVN 473
L ++ LH + + N I G+ +H + + L L ++
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI--------EHLLLEGLAYCQELKVLD 222
Query: 474 HQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSL--DGTIP----LEMGK 527
Q N + G S L+ + + + L + L++ L G +
Sbjct: 223 LQDNTFTHL------GSSALAIA----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272
Query: 528 IIFLEYLDLSYNNI 541
I L+ L L YN I
Sbjct: 273 NIGLQTLRLQYNEI 286
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 51/250 (20%), Positives = 73/250 (29%), Gaps = 54/250 (21%)
Query: 109 WYSNISGNIPSEIGA-----------LSKLQILDLSHNNLTGT----IPSKLGNLNNLVE 153
+ +G + EI KL + LS N T + L L
Sbjct: 67 FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126
Query: 154 LYLSRSNL-------------NGPIPSTLGHLTRLSILDLSSNSL----VGPIPFTLGHL 196
LYL + L + + L + N L + T
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186
Query: 197 TQLTTLKLFSNQIN--GCIPL---DFGNLRHLKEVDLSGNKLNGP-----IASTIGDLTN 246
L T+K+ N I G L + LK +DL N +A + N
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALKSWPN 245
Query: 247 LNSLDLSSKQLSGP----LPQEIGYLEN--LVYLSLNVNNLTGPIPSTLGR-----LTSL 295
L L L+ LS + LEN L L L N + TL + L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305
Query: 296 SDLDLSHNSL 305
L+L+ N
Sbjct: 306 LFLELNGNRF 315
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 2e-15
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 197 TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256
+T ++L N I P F + L+ +DLS N+++ L +LNSL L +
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 257 LSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSH 315
++ LP+ + L +L L LN N + L +L+ L L N L T S
Sbjct: 92 ITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 316 LTRLTTLKLFSN 327
L + T+ L N
Sbjct: 151 LRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 8/140 (5%)
Query: 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175
N+P I + L N + P L + LS + ++ P L L
Sbjct: 29 NLPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLN 234
+ L L N + L L L L +N+IN C+ +D F +L +L + L NKL
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141
Query: 235 GPIASTIGDLTNLNSLDLSS 254
T L + ++ L+
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQ 161
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-14
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNGP 236
+ L N++ P +L + L +NQI+ + D F LR L + L GNK+
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSL 295
S L +L L L++ +++ L + L NL LSL N L T L ++
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 296 SDLDLSHN 303
+ L+ N
Sbjct: 155 QTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 8e-13
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 309 IPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNL 367
IP L +T ++L N I IP G + L R+D+S+N++ P L +L
Sbjct: 26 IPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 368 IYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF----SLQSLILSNN 423
L L N+++ S F L L+ L LN+NK+N + + F +L L L +N
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDA---FQDLHNLNLLSLYDN 138
Query: 424 SLTGRIPSEIRNLSYLHELDLSLN 447
L L + + L+ N
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 86 NGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGA---LSKLQILDLSHNNLTGTIP 142
N I+ + FS + L + + IS + A L L L L N +T +P
Sbjct: 42 NTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKIT-ELP 96
Query: 143 SKL-GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT 201
L L +L L L+ + +N L L++L L N L T L + T
Sbjct: 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156
Query: 202 LKLFSN 207
+ L N
Sbjct: 157 MHLAQN 162
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-14
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 197 TQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSK 255
L+L +N+ F L L++++ S NK+ + +N + L+S
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 256 QLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TL 313
+L + ++ LE+L L L N +T + L+S+ L L N + + P
Sbjct: 92 RLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAF 149
Query: 314 SHLTRLTTLKLFSNQIN 330
L L+TL L +N N
Sbjct: 150 DTLHSLSTLNLLANPFN 166
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 5/140 (3%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPS-KLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175
IP I L L++N T + L L ++ S + + + +
Sbjct: 26 IPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83
Query: 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLN 234
+ + L+SN L L L TL L SN+I C+ D F L ++ + L N++
Sbjct: 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142
Query: 235 GPIASTIGDLTNLNSLDLSS 254
L +L++L+L +
Sbjct: 143 TVAPGAFDTLHSLSTLNLLA 162
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 7e-13
Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 5/131 (3%)
Query: 224 KEVDLSGNKLNG-PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282
E+ L+ N+ L L ++ S+ +++ + + L N L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGI-GNL 340
L SL L L N + + + L+ + L L+ NQI ++ G L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTL 152
Query: 341 ENLERVDMSSN 351
+L +++ +N
Sbjct: 153 HSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 17/145 (11%)
Query: 309 IPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNL 367
IP L+L +N+ GI L L +++ S+NK+ + +
Sbjct: 30 IPQYT------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83
Query: 368 IYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF----SLQSLILSNN 423
+ L+ N+L F L LK L L SN++ + ++ F S++ L L +N
Sbjct: 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDS---FIGLSSVRLLSLYDN 139
Query: 424 SLTGRIPSEI-RNLSYLHELDLSLN 447
+T + L L L+L N
Sbjct: 140 QIT-TVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 8/129 (6%)
Query: 86 NGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGA---LSKLQILDLSHNNLTGTIP 142
N F P L + I+ +I GA S + + L+ N L +
Sbjct: 42 NEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEILLTSNRLE-NVQ 97
Query: 143 SKL-GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT 201
K+ L +L L L + + + L+ + +L L N + P L L+T
Sbjct: 98 HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157
Query: 202 LKLFSNQIN 210
L L +N N
Sbjct: 158 LNLLANPFN 166
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 5e-14
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 293 TSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSN 351
T+ L L N + P L L L L SNQ+ ++P+G+ +L L +D+ +N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98
Query: 352 KLEGPIPLTIGD-LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELM 410
+L +P + D L +L L + N+L+ +P LT L L L+ N+L SIP
Sbjct: 99 QLTV-LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAF 155
Query: 411 -NCFSLQSLILSNN 423
SL L N
Sbjct: 156 DRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 5e-13
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+ ++D SK+ + +P I N L L+ N +T P L +L +L L N L
Sbjct: 20 SGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76
Query: 306 FGPIPPTL-SHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGD 363
G +P + LT+LT L L +NQ+ +P + L +L+ + M NKL +P I
Sbjct: 77 -GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIER 133
Query: 364 LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSN 399
LT+L +L L NQL F L+ L L N
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 46/133 (34%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Query: 197 TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256
T L L NQI P F +L +LKE+ L N+L LT L LDL + Q
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 257 LSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSH 315
L+ LP + L +L L + N LT +P + RLT L+ L L N L
Sbjct: 100 LTV-LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 316 LTRLTTLKLFSNQ 328
L+ LT LF N
Sbjct: 158 LSSLTHAYLFGNP 170
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 8e-10
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
S+P GI N + + + N++ P L NL L L NQL F LT L
Sbjct: 33 SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90
Query: 392 KFLNLNSNKLNGSIPS----ELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLN 447
L+L +N+L +PS L++ L+ L + N LT +P I L++L L L N
Sbjct: 91 TVLDLGTNQLT-VLPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
IL L N + P L L L L SNQ+ F +L L +DL N+L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
++ L +L L + +L+ LP+ I L +L +L+L+ N L RL+SL+
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 297 DLDLSHN 303
L N
Sbjct: 163 HAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 9e-09
Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 124 LSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L+ L L N L +P + +L L L L + L + L L L +
Sbjct: 63 LINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
N L +P + LT LT L L NQ+ F L L L GN
Sbjct: 122 NKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 3/138 (2%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P+ I + QIL L N +T P +L NL ELYL + L LT+L+
Sbjct: 34 VPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
+LDL +N L L L L + N++ +P L HL + L N+L
Sbjct: 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSI 150
Query: 237 IASTIGDLTNLNSLDLSS 254
L++L L
Sbjct: 151 PHGAFDRLSSLTHAYLFG 168
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 124 LSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L++L +LDL N LT +PS + L +L EL++ + L +P + LT L+ L L
Sbjct: 87 LTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQ 144
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQ 208
N L L+ LT LF N
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGNP 170
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 8e-14
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 293 TSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGN-LENLERVDMSSN 351
+ LDL NSL LT LT L L N++ S+P G+ N L +L +++S+N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86
Query: 352 KLEGPIPLTIGD-LTNLIYLDLSLNQLSGPIPS-TFGHLTLLKFLNLNSNKLNGSIPSEL 409
+L+ +P + D LT L L L+ NQL +P F LT LK L L N+L S+P +
Sbjct: 87 QLQS-LPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLK-SVPDGV 143
Query: 410 M-NCFSLQSLILSNN 423
SLQ + L +N
Sbjct: 144 FDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 6e-09
Identities = 44/134 (32%), Positives = 56/134 (41%), Gaps = 4/134 (2%)
Query: 197 TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256
Q T L L +N + F L L ++ L GNKL LT+L L+LS+ Q
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 257 LSGPLPQEI-GYLENLVYLSLNVNNLTGPIPS-TLGRLTSLSDLDLSHNSLFGPIPPTLS 314
L LP + L L L+LN N L +P +LT L DL L N L
Sbjct: 88 LQS-LPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145
Query: 315 HLTRLTTLKLFSNQ 328
LT L + L N
Sbjct: 146 RLTSLQYIWLHDNP 159
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 6e-08
Identities = 42/127 (33%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Query: 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI 237
LDL +NSL LT LT L L N++ F L L ++LS N+L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 238 ASTIGDLTNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
LT L L L++ QL LP + L L L L N L RLTSL
Sbjct: 93 NGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 297 DLDLSHN 303
+ L N
Sbjct: 152 YIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 8e-08
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
S+P GI +D+ +N L+ +LT+L L L N+L F LT L
Sbjct: 21 SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 392 KFLNLNSNKLNGSIPS----ELMNCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSL 446
+LNL++N+L S+P+ +L L+ L L+ N L +P + L+ L +L L
Sbjct: 79 TYLNLSTNQLQ-SLPNGVFDKLTQ---LKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQ 133
Query: 447 N 447
N
Sbjct: 134 N 134
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 33/105 (31%), Positives = 41/105 (39%)
Query: 153 ELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGC 212
L L ++L LT L+ L L N L LT LT L L +NQ+
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 213 IPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQL 257
F L LKE+ L+ N+L LT L L L QL
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGN-LNNLVELYLSRSNLN 162
+ +++ L+ L L L N L ++P+ + N L +L L LS + L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 163 GPIPSTLGHLTRLSILDLSSNSLVGPIP---FTLGHLTQLTTLKLFSNQINGCIPLDFGN 219
LT+L L L++N L +P F LTQL L+L+ NQ+ F
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQS-LPDGVF--DKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 220 LRHLKEVDLSGN 231
L L+ + L N
Sbjct: 147 LTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 8e-07
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P+ I A + LDL N+L L +L +LYL + L LT L+
Sbjct: 22 VPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKL 233
L+LS+N L LTQL L L +NQ+ +P F L LK++ L N+L
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQL 136
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 54/383 (14%), Positives = 120/383 (31%), Gaps = 43/383 (11%)
Query: 79 RISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSK----LQILDLS- 133
+ LS G + NL+ + S++ + L L++S
Sbjct: 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC 193
Query: 134 -HNNLTGTIPSKLG-NLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS------NSL 185
+ ++ + +L NL L L+R+ + + L +L L +
Sbjct: 194 LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253
Query: 186 VGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP-IASTIGDL 244
+ L +L L F + + +P + L ++LS + + +
Sbjct: 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313
Query: 245 TNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNS 304
L L + L ++L L + P + +L++ L S
Sbjct: 314 PKLQRLWVLDYIEDAGLEVLASTCKDLREL-----RVFPSEPFVMEPNVALTEQGLVSVS 368
Query: 305 LFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG-NLENLERVDMSSNKLEGPIPLTIGD 363
+L ++ F Q+ + + I N N+ R + + + P LT+
Sbjct: 369 ---------MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419
Query: 364 LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423
LD+ + H L+ L+L+ + ++ L ++
Sbjct: 420 ------LDIGFGAIV-------EHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466
Query: 424 SLTGR-IPSEIRNLSYLHELDLS 445
+ + + L +L++
Sbjct: 467 GDSDLGMHHVLSGCDSLRKLEIR 489
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 6e-05
Identities = 46/293 (15%), Positives = 91/293 (31%), Gaps = 41/293 (13%)
Query: 58 SNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGN- 116
+ ++G+ L+G LSG +S L + + Y+ +
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+ + KLQ L + + +L EL + S + LT
Sbjct: 306 LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPS--EPFVMEPNVALTEQG 363
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFG------NLRHLKEVDLSG 230
++ +S +L ++ F Q+ + N ++ L
Sbjct: 364 LVSVSM------------GCPKLESVLYFCRQMT-----NAALITIARNRPNMTRFRLCI 406
Query: 231 NKLNGPIASTIGDL-----------TNLNSLDLSSKQLSGPLPQEIG-YLENLVYLSLNV 278
+ P T+ L +L L LS L+ + + IG Y + + LS+
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF 465
Query: 279 NNLTGP-IPSTLGRLTSLSDLDLSHNSLFGP-IPPTLSHLTRLTTLKLFSNQI 329
+ + L SL L++ + S L + +L + S +
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 9e-05
Identities = 36/285 (12%), Positives = 79/285 (27%), Gaps = 34/285 (11%)
Query: 268 LENLVYLSLNVNNLTGPIPSTLG-RLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFS 326
+E + + N P+T+ R + ++L F
Sbjct: 40 IERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYP---- 95
Query: 327 NQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGD-LTNLIYLDLS-LNQLSGP-IPS 383
I + LE + + + I N L LS S + +
Sbjct: 96 -----WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA 150
Query: 384 TFGHLTLLKFLNLNSNKLNG----SIPSELMNCFSLQSLILSN--NSLTGR-IPSEIRNL 436
LK L+L + ++ + SL SL +S + ++ + +
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210
Query: 437 SYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGS 496
L L L+ + ++ + + + +
Sbjct: 211 PNLKSLKLN-RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD-------------VYSG 256
Query: 497 VPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+ + C L ++ +++ +P L L+LSY +
Sbjct: 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 4e-13
Identities = 64/449 (14%), Positives = 134/449 (29%), Gaps = 53/449 (11%)
Query: 38 RLEREALLNTGWWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNF 97
R L+ W + S++ + + + + LD+
Sbjct: 85 RAAMFNLIPENWGGYVTPWVTEISNNLR----------QLKSVHFRRMIVSDLDLDRLAK 134
Query: 98 SCFPNLESFRIWY-SNISGNIPSEIGA-LSKLQILDLSHNNLTGTIPSKLG----NLNNL 151
+ +LE+ ++ S + + I K++ L + ++ + L + +L
Sbjct: 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194
Query: 152 VELYLSRSNLNGPIPSTLGHLTR----LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
L + P L + R L + + ++ + F L S
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSL 253
Query: 208 QINGCIPLDFGNLRHLKEVDLSGNKLNGP--IASTIGDLTNLNSLDLSS-KQLSGPLPQE 264
+ +P + NL +++ G GP + + LDL +
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313
Query: 265 IGYLENLVYLSLNVNNLTGPIPSTLGRL-TSLSDLDLSHNSLFGPIPPTLSHLT------ 317
I NL L N + L + L L + + + ++
Sbjct: 314 IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372
Query: 318 ------RLTTLKLFSNQIN----GSIPLGIGNLENLERVDMSSNKLEGPIPLTIG----- 362
L + ++ + I SI + NL + V + + +PL G
Sbjct: 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432
Query: 363 -DLTNLIYLDLSLN--QLSGPIPSTFG-HLTLLKFLNLNSNKL-NGSIPSELMNCFSLQS 417
L L L+ S G + ++++ L + + C +LQ
Sbjct: 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK 492
Query: 418 LILSNNSLTGR-IPSEIRNLSYLHELDLS 445
L + + R I + + L L L +
Sbjct: 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 5e-10
Identities = 54/409 (13%), Positives = 115/409 (28%), Gaps = 44/409 (10%)
Query: 79 RISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSK----LQILDLSH 134
+ L +G + +++ + S+ S + L++ L++L+
Sbjct: 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM 201
Query: 135 NNLTG----TIPSKLGNLNNLVELYLSRSNL--NGPIPSTLGHLTRLSILDLSSNSLVGP 188
+ + N +LV + + + +L L+ + +
Sbjct: 202 TEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE 261
Query: 189 IPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIAST-IGDLTNL 247
L +L L L S +P+ F ++++DL L T I NL
Sbjct: 262 KYMNLVFPRKLCRLGL-SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320
Query: 248 NSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLT------------SL 295
L+ + L Y + L L + + G ++ L
Sbjct: 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380
Query: 296 SDLDLSHNSL-------FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG----NLENLE 344
+ + + + G L RL L + + G+ + L
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDF-RLVLLDREERITDLPLDNGVRSLLIGCKKLR 439
Query: 345 RVDMSSN--KLEGPIPLTIGDL-TNLIYLDLSLNQLSGP-IPSTFGHLTLLKFLNLNSNK 400
R L IG N+ ++ L S + L+ L +
Sbjct: 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499
Query: 401 L-NGSIPSELMNCFSLQSLILSNNSLTGRIPSEI---RNLSYLHELDLS 445
+I + + SL+ L + + + R + +
Sbjct: 500 FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 5e-13
Identities = 53/336 (15%), Positives = 111/336 (33%), Gaps = 58/336 (17%)
Query: 169 LGHLTRLSILDLSSNSL----VGPIPFTLGHL-TQLTTLKLFSNQI--NGCIPLDFG--- 218
++ LDLS N+L + + +T+L L N + L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 219 NLRHLKEVDLSGNKLNGPIASTIGDL-----TNLNSLDLSSKQLSGPLPQEIGYL----- 268
++ ++LSGN L+ + + + LDL S E
Sbjct: 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137
Query: 269 ENLVYLSLNVNNLTGPIPSTLGRL-----TSLSDLDLSHNSLFGP-----IPPTLSHL-T 317
++ L+L N+L L ++ +++ L+L N+L + L+ +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPA 196
Query: 318 RLTTLKLFSNQIN--GSIPLGIG---NLENLERVDMSSNKLEGP----IPLTIGDLTNLI 368
+T+L L +N + L ++ +++ N L GP + L L +L
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256
Query: 369 YLDLSLNQLSGP-------IPSTFGHLTLLKFLNLNSNKLNGSIPSELMN-----CFSLQ 416
+ L + + + + F ++ + ++ N +++ S + N
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316
Query: 417 SLILSNNSLT-----GRIPSEIRNLSYLHELDLSLN 447
L N L ++ L E +
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 52/279 (18%), Positives = 95/279 (34%), Gaps = 48/279 (17%)
Query: 219 NLRHLKEVDLSGNKLNGPIASTIGDL-----TNLNSLDLSSKQLSGPLPQEIGYL----- 268
+ +DLS N L + ++ SL+LS L E+ +
Sbjct: 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79
Query: 269 ENLVYLSLNVNNLTGPIPSTLGRL-----TSLSDLDLSHNSLFGP-----IPPTLSHL-T 317
N+ L+L+ N L+ L + +++ LDL N S+L
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPA 138
Query: 318 RLTTLKLFSNQIN--GSIPLGIG---NLENLERVDMSSNKL--EGPIPLT---IGDLTNL 367
+T+L L N + S L N+ +++ N L + L ++
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198
Query: 368 IYLDLSLNQLS----GPIPSTFGHL-TLLKFLNLNSNKLNGS----IPSELMNCFSLQSL 418
LDLS N L + F + + LNL N L+G + + LQ++
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258
Query: 419 ILSNNSLTG-------RIPSEIRNLSYLHELDLSLNFIS 450
L + + + + N+ + +D + I
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 40/287 (13%), Positives = 89/287 (31%), Gaps = 61/287 (21%)
Query: 112 NISGNIPSEIGAL----------SKLQILDLSHNNLTGT----IPSKLGNLN-NLVELYL 156
N+SGN S + + +LDL N+ + NL ++ L L
Sbjct: 86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145
Query: 157 SRSNLNGP----IPSTLGHL-TRLSILDLSSNSL----VGPIPFTLGHL-TQLTTLKLFS 206
++L + L + ++ L+L N+L + L + +T+L L +
Sbjct: 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205
Query: 207 NQIN--GCIPLDFG---NLRHLKEVDLSGNKLNGP----IASTIGDLTNLNSLDLSSKQL 257
N + L + H+ ++L N L+GP + L +L ++ L +
Sbjct: 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265
Query: 258 SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLS--- 314
++ L + + + +D + + +S
Sbjct: 266 KNMSKEQCKALG-----------------AAFPNIQKIILVDKNGKEIHPSHSIPISNLI 308
Query: 315 --HLTRLTTLKLFSNQI-----NGSIPLGIGNLENLERVDMSSNKLE 354
+ L + + + + + + L + L
Sbjct: 309 RELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 56/310 (18%), Positives = 99/310 (31%), Gaps = 56/310 (18%)
Query: 274 LSLNVNNLTG--PIPSTLGRLTSLSDLDLSHNSL----FGPIPPTLSHL-TRLTTLKLFS 326
++ + G P+ ++ LDLS N+L + ++ +T+L L
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 327 NQI--NGSIPLG---IGNLENLERVDMSSNKLEGPIPLTIGDL-----TNLIYLDLSLNQ 376
N + S L N+ +++S N L + + LDL N
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120
Query: 377 LSG----PIPSTFGHLTL-LKFLNLNSNKLNGSIPSELMNCF-----SLQSLILSNNSLT 426
S F +L + LNL N L EL+ ++ SL L N+L
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180
Query: 427 GR----IPSEIRNL-SYLHELDLSLNFI--SGMTPPQHFKQKHSIRDRLLTYVNHQFNRL 479
+ + + ++ + + LDLS N + S + +N N L
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSY---AELAYIFSSIPNHVVSLNLCLNCL 237
Query: 480 SGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIF--------L 531
G L L + L V L + + + E K + +
Sbjct: 238 HGP------SLENLKLL----KDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKI 286
Query: 532 EYLDLSYNNI 541
+D + I
Sbjct: 287 ILVDKNGKEI 296
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 1e-11
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPL-TIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL 390
+ ENL + + + + + L + L L L + + L P F
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 391 LKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLT 426
L LNL+ N L S+ + + SLQ L+LS N L
Sbjct: 82 LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 2e-11
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 309 IPPTLSHLTRLTTLKLFSNQINGSIPLG-IGNLENLERVDMSSNKLEGPIPLTIGDLTNL 367
L LT L + + Q + L + L L + + + L P L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 368 IYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN 402
L+LS N L T L+ L+ L L+ N L+
Sbjct: 83 SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 1e-10
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 116 NIPSEIGALSKLQILDLSHNNLTGTIPSK-LGNLNNLVELYLSRSNLNGPIPSTLGHLTR 174
+ + L L + + + + L L L L + +S L P R
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 175 LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQIN 210
LS L+LS N+L T+ L+ L L L N ++
Sbjct: 82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 7e-09
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 165 IPSTLGHLTRLSILDLSSNSLVGPIP-FTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRH 222
L L+ L + + + + L L +L L + + + + D F
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81
Query: 223 LKEVDLSGNKLNGPIASTIGDLTNLNSLDLSS 254
L ++LS N L T+ L +L L LS
Sbjct: 82 LSRLNLSFNALESLSWKTVQGL-SLQELVLSG 112
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 7e-09
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 130 LDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPS-TLGHLTRLSILDLSSNSLVGP 188
L + + L NL ELY+ + L L L L + + L
Sbjct: 13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71
Query: 189 IPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
P +L+ L L N + L L+E+ LSGN L+
Sbjct: 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 262 PQEIGYLENLVYLSLNVNNLTGPIPS-TLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRL 319
+ ENL L + + L L L +L + + L + P RL
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRL 82
Query: 320 TTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL 353
+ L L N + S+ +L+ + +S N L
Sbjct: 83 SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 1e-07
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 189 IPFTLGHLTQLTTLKLFSNQINGCIPL-DFGNLRHLKEVDLSGNKLNGPIASTIGDLTNL 247
L LT L + + Q + L D L L+ + + + L L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 248 NSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282
+ L+LS L L + +L L L+ N L
Sbjct: 83 SRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 239 STIGDLTNLNSLDLSSKQLSGPLPQE-IGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSD 297
+ NL L + ++Q L + L L L++ + L P LS
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 298 LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330
L+LS N+L + L L L N ++
Sbjct: 85 LNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 8e-06
Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 374 LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQSLILSNNSLTGRIPSE 432
+ L L + + + + L L++L + + L + +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74
Query: 433 I-RNLSYLHELDLSLNFISGMTPPQHFK 459
L L+LS N + + + +
Sbjct: 75 AFHFTPRLSRLNLSFNALESL-SWKTVQ 101
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 4e-10
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 293 TSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSN 351
+++L L N +P LS+ LT + L +N+I+ ++ N+ L + +S N
Sbjct: 31 RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN 88
Query: 352 KLEGPIPLTIGD-LTNLIYLDLSLNQLSGPIP-STFGHLTLLKFLNLNSN 399
+L IP D L +L L L N +S +P F L+ L L + +N
Sbjct: 89 RLRC-IPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 245 TNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNS 304
++ L L Q + +P+E+ ++L + L+ N ++ + +T L L LS+N
Sbjct: 31 RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 305 LFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSN 351
L IPP T L L L L N I+ +P G +L L + + +N
Sbjct: 90 L-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-08
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
+P GI ++ + + N+ +P + + +L +DLS N++S +F ++T L
Sbjct: 24 VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 392 KFLNLNSNKLNGSIPSELMNCF----SLQSLILSNNSL 425
L L+ N+L IP F SL+ L L N +
Sbjct: 81 LTLILSYNRLR-CIPPRT---FDGLKSLRLLSLHGNDI 114
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
L L N +P L + LT + L +N+I+ F N+ L + LS N+L
Sbjct: 35 ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 237 IASTIGDLTNLNSLDLSSKQLS 258
T L +L L L +S
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDIS 115
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 110 YSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTL 169
N +P E+ L ++DLS+N ++ N+ L+ L LS + L P T
Sbjct: 39 DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
Query: 170 GHLTRLSILDLSSNSLVGPIP-FTLGHLTQLTTLKLFSN 207
L L +L L N + +P L+ L+ L + +N
Sbjct: 99 DGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 6/126 (4%)
Query: 129 ILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGP 188
++ L+ + ++ N EL L R I + L + +D S N +
Sbjct: 1 MVKLTAELIEQA--AQYTNAVRDRELDL-RGYKIPVIENLGATLDQFDAIDFSDNEIR-K 56
Query: 189 IPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP-IASTIGDLTNL 247
+ L +L TL + +N+I L L E+ L+ N L + L +L
Sbjct: 57 LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115
Query: 248 NSLDLS 253
L +
Sbjct: 116 TYLCIL 121
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 8e-09
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
+ + LDL + I + L+ + S + + + L RL L +++N
Sbjct: 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNN 74
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDF-GNLRHLKEVDLSGNKLNGPIAS--- 239
+ L LT L L +N + LD +L+ L + + N P+ +
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN----PVTNKKH 130
Query: 240 ----TIGDLTNLNSLD 251
I + + LD
Sbjct: 131 YRLYVIYKVPQVRVLD 146
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 6/127 (4%)
Query: 322 LKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPI 381
+KL + I + N +D+ K+ L L +D S N++ +
Sbjct: 2 VKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNEIR-KL 57
Query: 382 PSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTG-RIPSEIRNLSYLH 440
F L LK L +N+N++ L LIL+NNSL + +L L
Sbjct: 58 -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116
Query: 441 ELDLSLN 447
L + N
Sbjct: 117 YLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN---KLEGPIPLTIGDLTNLIY 369
++ R L L +I LG L+ + +D S N KL+G L L
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNEIRKLDG-----FPLLRRLKT 68
Query: 370 LDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG-SIPSELMNCFSLQSLILSNNSLT 426
L ++ N++ L L L L +N L L + SL L + N +T
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 9e-08
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327
L L + I + L +D S N + L RL TL + +N
Sbjct: 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 74
Query: 328 QINGSIPLGIGNLENLERVDMSSNKLEGPIPLT-IGDLTNLIYLDLSLN 375
+I L +L + +++N L L + L +L YL + N
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 9e-08
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 219 NLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSS---KQLSGPLPQEIGYLENLVYLS 275
N +E+DL G K+ I + L +++D S ++L G L L L
Sbjct: 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRLKTLL 70
Query: 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSL--FGPIPPTLSHLTRLTTLKLFSNQI 329
+N N + L L++L L++NSL G + P L+ L LT L + N +
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNPV 125
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 363 DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSN 422
+ LDL ++ I + L ++ + N++ + L++L+++N
Sbjct: 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73
Query: 423 NSLTGRIPSEIRNLSYLHELDLSLNFIS 450
N + + L L EL L+ N +
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 18/115 (15%)
Query: 98 SCFPNLESFRIWYSNIS--GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155
+ ++ + I P L +L+ L +++N + L +L EL
Sbjct: 39 ATLDQFDAIDFSDNEIRKLDGFPL----LRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94
Query: 156 LSRSNLNGP-IPSTLGHLTRLSILDLSSNSLVGPI-------PFTLGHLTQLTTL 202
L+ ++L L L L+ L + N P+ + + + Q+ L
Sbjct: 95 LTNNSLVELGDLDPLASLKSLTYLCILRN----PVTNKKHYRLYVIYKVPQVRVL 145
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-09
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 147 NLNNLVELYLSRSNLN-GPIPSTLGHLTRLSILDLSSNSL--VGPIPFTLGHLTQLTTLK 203
+ EL L N G I L L L + L V +P L +L L+
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLE 77
Query: 204 LFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP-IASTIGDLTNLNSLDLS 253
L N+I G + + L +L ++LSGNKL + L L SLDL
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-08
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 267 YLENLVYLSL-NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLF 325
+ L L N + G I +L L L + L + L L +L L+L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSN-LPKLPKLKKLELS 79
Query: 326 SNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLT-IGDLTNLIYLDLSLNQLS 378
N+I G + + L NL +++S NKL+ L + L L LDL +++
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 15/131 (11%)
Query: 129 ILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGP 188
+LD +N G I NL L L L S L L +L L+LS N + G
Sbjct: 30 VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGG 86
Query: 189 IPFTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNGPIAST------- 240
+ L LT L L N++ L+ L LK +DL + +
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTNLNDYRESV 142
Query: 241 IGDLTNLNSLD 251
L L LD
Sbjct: 143 FKLLPQLTYLD 153
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 319 LTTLKLFSNQIN-GSIPLGIGNLENLERVDMSSN---KLEGPIPLTIGDLTNLIYLDLSL 374
+ L L + + N G I NLE + + + + + L L L+LS
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-----LPKLPKLKKLELSE 80
Query: 375 NQLSGPIPSTFGHLTLLKFLNLNSNKLNG-SIPSELMNCFSLQSLILSNNSLT 426
N++ G + L L LNL+ NKL S L L+SL L N +T
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 335 LGIGNLENLERVDMSSNKL-EGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKF 393
L + + + + K +G I + NL +L L L S L LK
Sbjct: 18 LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKK 75
Query: 394 LNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTG-RIPSEIRNLSYLHELDLSLN 447
L L+ N++ G + +L L LS N L ++ L L LDL
Sbjct: 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 370 LDLSLNQLS-GPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428
L L + + G I L+FL+L + L S+ + L L+ L LS N + G
Sbjct: 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGG 86
Query: 429 IPSEIRNLSYLHELDLSLNFIS 450
+ L L L+LS N +
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 96 NFSCFPNLESFRIWYSNIS--GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVE 153
+ F NLE + + N+P L KL+ L+LS N + G + L NL
Sbjct: 44 LTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLELSENRIFGGLDMLAEKLPNLTH 99
Query: 154 LYLSRSNLNGP-IPSTLGHLTRLSILDLSSNSLVGPI---PFTLGHLTQLTTL 202
L LS + L L L L LDL + + L QLT L
Sbjct: 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-09
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 147 NLNNLVELYLS-RSNLNGPIPSTLGHLTRLSILDLSSNSL--VGPIPFTLGHLTQLTTLK 203
+++ EL L + G + L L + L + +P L +L L+
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLE 70
Query: 204 LFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP-IASTIGDLTNLNSLDLS 253
L N+++G + + +L ++LSGNK+ + L NL SLDL
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 219 NLRHLKEVDLSGNKLN-GPIASTIGDLTNLNSLDLSS---KQLSGPLPQEIGYLENLVYL 274
+KE+ L ++ N G + + L L + ++ + L L L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKL 69
Query: 275 SLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL--FGPIPPTLSHLTRLTTLKLFSNQI 329
L+ N ++G + + +L+ L+LS N + I P L L L +L LF+ ++
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNCEV 125
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 268 LENLVYLSLNVNNLT-GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFS 326
++ L L+ + G + L L + L I L L +L L+L
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IAN-LPKLNKLKKLELSD 73
Query: 327 NQINGSIPLGIGNLENLERVDMSSNKLEGPIPLT-IGDLTNLIYLDLSLN 375
N+++G + + NL +++S NK++ + + L NL LDL
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 335 LGIGNLENLERVDMSSNKL-EGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKF 393
L +++ + + +++ EG + + L +L L+ + L LK
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKK 68
Query: 394 LNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTG-RIPSEIRNLSYLHELDLSLNFIS 450
L L+ N+++G + C +L L LS N + ++ L L LDL ++
Sbjct: 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+ +L+ L + LT +I + L LN L +L LS + ++G + L+
Sbjct: 34 LEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91
Query: 177 ILDLSSNSLVGPIPFT-LGHLTQLTTLKLFSNQI 209
L+LS N + L L L +L LF+ ++
Sbjct: 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 18/117 (15%)
Query: 96 NFSCFPNLESFRIWYSNIS--GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVE 153
F LE ++ N+P L+KL+ L+LS N ++G + NL
Sbjct: 37 LTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92
Query: 154 LYLSRSNLNGP-IPSTLGHLTRLSILDLSSNSLVGPI-------PFTLGHLTQLTTL 202
L LS + + L L L LDL + + L QLT L
Sbjct: 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC----EVTNLNDYRENVFKLLPQLTYL 145
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 21/169 (12%)
Query: 280 NLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGN 339
+ + ++ +L + + TLS L L L +N I I +
Sbjct: 16 ERKSVVATEAEKV----ELHGMIPPIEK-MDATLSTLKACKHLALSTNNI-EKIS-SLSG 68
Query: 340 LENLERVDMSSNKLEGPIPLTIGDL----TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLN 395
+ENL + + N ++ I +L L L +S NQ++ S L L+ L
Sbjct: 69 MENLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLY 121
Query: 396 LNSNKLN--GSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHEL 442
+++NK+ G I +L L+ L+L+ N L Y E+
Sbjct: 122 MSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 7e-09
Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 34/195 (17%)
Query: 196 LTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSG--NKLNGPIASTIGDLTNLNSLDLS 253
+ + TT+K + I ++V+L G + + +T+ L L LS
Sbjct: 1 MAKATTIK---DAIRIFEERKSVVATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALS 56
Query: 254 S---KQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHN---SLFG 307
+ +++S + +ENL LSL N + I + +L +L +S+N SL G
Sbjct: 57 TNNIEKISS-----LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLSG 110
Query: 308 PIPPTLSHLTRLTTLKLFSNQINGSIPLG-IGNLENLERVDMSSNKLEGPIPLT------ 360
+ L L L + +N+I + + L+ LE + ++ N L
Sbjct: 111 -----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165
Query: 361 ----IGDLTNLIYLD 371
+ L NL LD
Sbjct: 166 RIEVVKRLPNLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 9e-09
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 11/153 (7%)
Query: 316 LTRLTTLKLFSNQINGSIPLGIGNLENLERVDM--SSNKLEGPIPLTIGDLTNLIYLDLS 373
+ + TT+K + I E+V++ +E + T+ L +L LS
Sbjct: 1 MAKATTIK---DAIRIFEERKSVVATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALS 56
Query: 374 LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433
N + I S+ + L+ L+L N + I + +L+ L +S N + + S I
Sbjct: 57 TNNIEK-I-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGI 111
Query: 434 RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRD 466
L L L +S N I+ + D
Sbjct: 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 25/153 (16%)
Query: 69 IVCNLNGSII----RISLS-GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEI-- 121
I + ++ L + I K+D S + +S N +I
Sbjct: 13 IFEERKSVVATEAEKVELHGMIPPIE-KMDA-TLSTLKACKHL-----ALSTNNIEKISS 65
Query: 122 -GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSR---SNLNGPIPSTLGHLTRLSI 177
+ L+IL L N + I + + L EL++S ++L+G + L L +
Sbjct: 66 LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRV 119
Query: 178 LDLSSNSLVGPIPF-TLGHLTQLTTLKLFSNQI 209
L +S+N + L L +L L L N +
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 245 TNLNSLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHN 303
+ L L+ +L + G L +LV L L N LTG P+ + + +L L N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 304 SLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSN 351
+ I L +L TL L+ NQI+ + G +L +L ++++SN
Sbjct: 89 KI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-08
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGD-LTNLIYLDLSLNQLSGPIPSTFGHLTL 390
IP I + + ++ N+L + L +L+ L+L NQL+G P+ F +
Sbjct: 22 EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 391 LKFLNLNSNKLNGSIPSELMNCF----SLQSLILSNNSLTGRIPSEI-RNLSYLHELDLS 445
++ L L NK+ I +++ F L++L L +N ++ + +L+ L L+L+
Sbjct: 80 IQELQLGENKIK-EISNKM---FLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLA 134
Query: 446 LN 447
N
Sbjct: 135 SN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSK--LGNLNNLVELYLSRSNLNGPIPSTLGHLTR 174
IP +I L L+ N L I S G L +LV+L L R+ L G P+ +
Sbjct: 23 IPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 175 LSILDLSSNSLVGPIP---FTLGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSG 230
+ L L N + I F L QL TL L+ NQI+ C+ F +L L ++L+
Sbjct: 80 IQELQLGENKI-KEISNKMFL--GLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLAS 135
Query: 231 N 231
N
Sbjct: 136 N 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 200 TTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258
T L L N++ FG L HL +++L N+L G + +++ L L ++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 259 GPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHN 303
+ ++ L L L+L N ++ +P + L SL+ L+L+ N
Sbjct: 92 E-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 3e-08
Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 21/162 (12%)
Query: 162 NGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI--NGCIPLDFGN 219
+ L + L+ L + + + L +L++ S + + + +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217
Query: 220 LRHLKEVDLSGNKLNGPIASTIGDLT---------NLNSLDLSSKQLSGPLPQEIG---Y 267
L +L+++ L + + NL L + + + +
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277
Query: 268 LENLVYLSLNVNNLTG----PIPSTLGRLTSLSDLDLSHNSL 305
L L + ++ LT + + ++ L +++ +N L
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 4e-08
Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 21/162 (12%)
Query: 307 GPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL--EGPIPLTIGDL 364
+ P L + L LK+ ++ +G NL+ +++ S L + DL
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218
Query: 365 TNLIYLDLSL---NQLSGPIPSTF------GHLTLLKFLNLNSNKLNGSIPSELMNCF-- 413
NL L L + + + F LK+L + + + +
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 414 -SLQSLILSNNSLTGR----IPSEIRNLSYLHELDLSLNFIS 450
L+++ +S LT + + + +L +++ N++S
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 6e-07
Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 24/194 (12%)
Query: 96 NFSCFPNLESFRIWYSNISGNIPSEI---------GALSKLQILDLSHNNLTGTIPSKLG 146
N F + E + S I A+ L L + N
Sbjct: 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRP 193
Query: 147 NLNNLV--ELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP------FTLGHLTQ 198
NL +L L S + + S L +L +L + + F+
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253
Query: 199 LTTLKLFSNQI--NGCIPL-DFGNLRHLKEVDLSGNKLNG----PIASTIGDLTNLNSLD 251
L L + + + L L+ +D+S L + + + +L ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313
Query: 252 LSSKQLSGPLPQEI 265
+ LS + +E+
Sbjct: 314 MKYNYLSDEMKKEL 327
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 1e-06
Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 24/179 (13%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIP-----SKLGNLNNL 151
P L + +I + N+ L+ L++ L ++ S L NL L
Sbjct: 168 LDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224
Query: 152 VELYLSRSNLNGPIPSTL-------GHLTRLSILDLSSNSLVGPIPFTLGH---LTQLTT 201
LY+ + + L L + + L QL T
Sbjct: 225 -VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283
Query: 202 LKLFSNQI--NGCIPL--DFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256
+ + + + G L ++HLK +++ N L+ + + + +D+S Q
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-IDVSDSQ 341
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 49.2 bits (116), Expect = 3e-06
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 18/160 (11%)
Query: 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTL--SHLTRLTTLKLF 325
L+ + L+ T + +L L++ L + + S L L L L+
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227
Query: 326 SNQINGSIPLGIGNLE---------NLERVDMSSNKLEGPIPLTIGD---LTNLIYLDLS 373
+ + NL+ + + + + + + L L +D+S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287
Query: 374 LNQLSG----PIPSTFGHLTLLKFLNLNSNKLNGSIPSEL 409
L+ + + LKF+N+ N L+ + EL
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 5e-05
Identities = 22/171 (12%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIP--LGIGNL 340
+ L + L++L + + + L +L++ S + S+ + +L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218
Query: 341 ENLERVDMSSNKLEGPIPLTIGDLT---------NLIYLDLSLNQLSGPIPSTFGH---L 388
NLE++ + + + NL +L + + + F L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 389 TLLKFLNLNSNKLNGS----IPSELMNCFSLQSLILSNNSLTGRIPSEIRN 435
L+ +++++ L + + L+ + + N L+ + E++
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 3e-08
Identities = 96/497 (19%), Positives = 152/497 (30%), Gaps = 154/497 (30%)
Query: 22 VDVITDTFVTASIVPIRLE-----REALLN--------------TGWWNNSREKASNHSD 62
V V+ RL+ R+ALL +G K D
Sbjct: 123 NQVFAKYNVS------RLQPYLKLRQALLELRPAKNVLIDGVLGSG-------KTWVALD 169
Query: 63 HCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCF---PNLESFRIWYSNISGNIPS 119
C + C ++ I ++L N L+ + PN S SNI I S
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 120 EIGALSKLQILDLSHNN--LTGTIPSKLGNLNN--LVELYLSRSNLNGPIPSTLGHLTR- 174
L +L + + N L + L N+ N + NL+ I T TR
Sbjct: 230 IQAELRRL-LKSKPYENCLL---V---LLNVQNAKAWNAF----NLSCKILLT----TRF 274
Query: 175 LSILDLSSNSLVGPIPFTLGH----LTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSG 230
+ D S + I L H LT L ++ C P D L L+
Sbjct: 275 KQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKYLD-CRPQD------LPREVLTT 325
Query: 231 NKLNGPIA-STIGDL-------------TNLNSL----DLSSKQLSGPLPQEI-GYLENL 271
N P S I + N + L + S L P E + L
Sbjct: 326 N----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRL 378
Query: 272 VYLSLNVNNLTGPIPS-TLGRL-------TSLSDLDLSHN-SLF--GPIPPTLS-HLTRL 319
+ + IP+ L + + ++ H SL P T+S L
Sbjct: 379 SVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 320 TTLKLFSN--QINGSIPLGIGNLE--NLERV----DMSSNKLEGPIPLTIG--------- 362
N ++ SI ++ N+ + D+ L+ IG
Sbjct: 434 ELKVKLENEYALHRSI------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 363 ---DLTNLIYLDLS-LNQ----------LSGPIPSTFGHLTL-LKFLNLNSNKLNGSIPS 407
L +++LD L Q SG I +T L ++ N K + +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV-N 546
Query: 408 ELMNCFSLQ---SLILS 421
+++ F + +LI S
Sbjct: 547 AILD-FLPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 73/451 (16%), Positives = 132/451 (29%), Gaps = 152/451 (33%)
Query: 411 NCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLT 470
NC S ++++ L +I + ++ D S N HSI+ L
Sbjct: 191 NCNSPETVLEMLQKLLYQI-----DPNWTSRSDHSSN------IKLRI---HSIQAELRR 236
Query: 471 YVNHQ--------------------FNRLSGQIPMT---IGGLSKLSGSVPSEIGNCSGL 507
+ + FN LS +I +T LS + + I
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHI------ 289
Query: 508 LNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMINFSISP 567
++ P E K + L+YLD ++P E + P + +I SI
Sbjct: 290 ----SLDHHSMTLTPDE-VKSLLLKYLDCRPQDLP---RE-VLTTNPR-RLSIIAESIRD 339
Query: 568 TPSPAS--PQQEPNKV-MILLISI----------------IFP----IAAFVAFLAHGTL 604
+ +K+ I+ S+ +FP I L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-------ILL 392
Query: 605 FLLRRKNKRAELTSGEIKSQDRDAFSIWNCDGRIAFEEIIRATEDLISDIALELDVTAA- 663
L+ ++++ K + I+ I I LEL V
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-----------IPSIYLELKVKLEN 441
Query: 664 -FTKHGCLVAEYGSEQGRSAFFKSFQNEA----------------HVFN--NILLNSEFE 704
+ H +V Y K+F ++ H+ N + + F
Sbjct: 442 EYALHRSIVDHY-------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 705 AFFGNFG-VARLLNSDSSNRTLIAG---------TYR-YIAPAKHPQ------EILSLFS 747
F +F + + + DS+ Y+ YI P+ IL F
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYERLVNAILD-FL 552
Query: 748 STSDPHITLTYILDQRISPPKKQKIVQDIAL 778
+ ++ + D +++ IAL
Sbjct: 553 PKIEENLICSKYTD----------LLR-IAL 572
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 5e-08
Identities = 57/287 (19%), Positives = 101/287 (35%), Gaps = 31/287 (10%)
Query: 43 ALLNTGWWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFP- 101
+ + W+ + +++ + + ++ G ++ + R +DQ F
Sbjct: 33 SGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP 92
Query: 102 -NLESFRIWYSNIS-GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSR- 158
++ + S I + + SKLQ L L L+ I + L +NLV L LS
Sbjct: 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152
Query: 159 SNL-NGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDF 217
S + + L +RL L+LS T H+
Sbjct: 153 SGFSEFALQTLLSSCSRLDELNLSWCFDF-----TEKHVQVAVA---------------- 191
Query: 218 GNLRHLKEVDLSGNKLN---GPIASTIGDLTNLNSLDLSS-KQLSGPLPQEIGYLENLVY 273
+ +++LSG + N +++ + NL LDLS L QE L L +
Sbjct: 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251
Query: 274 LSL-NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRL 319
LSL ++ LG + +L L + G + L L
Sbjct: 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 298
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
S+P GI + + R+++ SNKL+ LT L L LS NQ+ F LT L
Sbjct: 21 SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 392 KFLNLNSNKLNGSIPSELM-NCFSLQSLILSNNSLTGRIPSEI-RNLSYLHELDLSLN 447
L L+ NKL S+P+ + L+ L L N L +P I L+ L ++ L N
Sbjct: 79 TILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 26/128 (20%)
Query: 273 YLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTL-SHLTRLTTLKLFSNQING 331
L L N L +LT L+ L LS N + +P + LT+LT L L N++
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQ- 89
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391
S+P G+ + LT L L L NQL F LT L
Sbjct: 90 SLPNGVFD-----------------------KLTQLKELALDTNQLKSVPDGIFDRLTSL 126
Query: 392 KFLNLNSN 399
+ + L++N
Sbjct: 127 QKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P+ I + L+L N L L L +L LS++ + LT+L+
Sbjct: 22 VPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79
Query: 177 ILDLSSNSLVGPIP---FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
IL L N L +P F LTQL L L +NQ+ F L L+++ L N
Sbjct: 80 ILYLHENKLQS-LPNGVF--DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 197 TQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256
+ T L+L SN++ F L L ++ LS N++ LT L L L +
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 257 LSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHN 303
L LP + L L L+L+ N L RLTSL + L N
Sbjct: 88 LQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+ ++D S K L+ +P I L L N +T P RLT L+ LDL +N L
Sbjct: 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 306 FGPIPPTL-SHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSN 351
+P + LT+LT L L NQ+ SIP G NL++L + + +N
Sbjct: 67 -TVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 346 VDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI 405
VD S L +P I T L L NQ++ P F LT L L+L++N+L +
Sbjct: 14 VDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VL 69
Query: 406 PS----ELMNCFSLQSLILSNNSLTGRIP 430
P+ +L L L L++N L IP
Sbjct: 70 PAGVFDKLTQ---LTQLSLNDNQLK-SIP 94
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 48/146 (32%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAP--AKHPQ------------ 740
NILL+ EFEA G+FG+A+L++ ++ T + GT +IAP +
Sbjct: 164 NILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGV 223
Query: 741 ---EILS--------LFSSTSDPHIT-----------LTYILDQRI--SPPKKQ--KIVQ 774
E+++ ++ D + L ++D + + ++ +++Q
Sbjct: 224 MLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQ 283
Query: 775 DIALASIVALACLQSKPKSVPTMQRV 800
VAL C QS P P M V
Sbjct: 284 -------VALLCTQSSPMERPKMSEV 302
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+ ++ + +L+ +P I + L LN N +T P L +L L + N L
Sbjct: 13 DQTLVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69
Query: 306 FGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSN 351
IP LT+LT L L N + SIP G NL++L + + +N
Sbjct: 70 -TAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 346 VDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI 405
V+ + +L +P I T+ L L+ NQ++ P F HL L+ L NSNKL +I
Sbjct: 17 VNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AI 72
Query: 406 PS----ELMNCFSLQSLILSNNSLTGRIP 430
P+ +L L L L++N L IP
Sbjct: 73 PTGVFDKLTQ---LTQLDLNDNHLK-SIP 97
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 46/310 (14%), Positives = 86/310 (27%), Gaps = 61/310 (19%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLT-RLSILDLS 181
LS L+ L+L+ +T + + + LG L ++L+
Sbjct: 70 VLSSLRQLNLAGVRMTPVKCTVVA--------------------AVLGSGRHALDEVNLA 109
Query: 182 SNSL----VGPIPFTLGHLTQLTTLKLFSNQI--NGCIPLDFG---NLRHLKEVDLSGNK 232
S L + + L + L L N + C L + + + LS N
Sbjct: 110 SCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166
Query: 233 LNGP----IASTIGDLTNLNSLDLSSKQLSGP----LPQEIGYLENLVYLSLNVNNLTGP 284
L + + T++ L L L L ++ L L++ N
Sbjct: 167 LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226
Query: 285 ----IPSTLGRLTSLSDLDLSHNSLFGP-----IPPTLSHLTRLTTLKLFSNQINGSIPL 335
+ SL L L N L + + + +
Sbjct: 227 AALALARAAREHPSLELLHLYFNEL-SSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285
Query: 336 GIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHL----TLL 391
L ++R S ++ L L+ DL ++ + P L +
Sbjct: 286 WSVILSEVQRNLNSWDRARVQRHLE------LLLRDLEDSRGATLNPWRKAQLLRVEGEV 339
Query: 392 KFLNLNSNKL 401
+ L
Sbjct: 340 RALLEQLGSS 349
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 39/261 (14%)
Query: 220 LRHLKEVDLSGNKLNGPIASTIGDL-----TNLNSLDLSSKQLSGPLPQEIG-YLENLVY 273
L L++++L+G ++ + + + L+ ++L+S QL + +
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130
Query: 274 LSLNVNNLTGPIPSTLGRL-----TSLSDLDLSHNSL----FGPIPPTLSHLTRLTTLKL 324
L L +N+L L L ++ L LS+N L + L+ T +T L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190
Query: 325 FSNQI--NGSIPLGIGNLEN--LERVDMSSNKL--EGPIPL--TIGDLTNLIYLDLSLNQ 376
+ G L N L+ ++++ N + L + +L L L N+
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250
Query: 377 LS-------GPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRI 429
LS + + ++ L + + NS
Sbjct: 251 LSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY------WSVILSEVQRNLNSWD--- 301
Query: 430 PSEIRNLSYLHELDLSLNFIS 450
+ ++ L DL + +
Sbjct: 302 RARVQRHLELLLRDLEDSRGA 322
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 46/143 (32%)
Query: 696 NILLNSEFEAFFGNFGVARLL--NSDSSNRTLIAGTYRYIAP------------------ 735
NILL+ F A +FG+AR + + + I GT Y+AP
Sbjct: 163 NILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGV 222
Query: 736 -------------AKHPQEIL-----SLFSSTSDPHITLTYILDQRISPPKKQKIVQDIA 777
++L + + +D++++ +
Sbjct: 223 VLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKT----IEDYIDKKMN----DADSTSVE 274
Query: 778 LASIVALACLQSKPKSVPTMQRV 800
VA CL K P +++V
Sbjct: 275 AMYSVASQCLHEKKNKRPDIKKV 297
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAKHPQEILS 744
N+LL + A +FG+A + S + GT RY+AP E+L
Sbjct: 161 NVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAP-----EVLE 206
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 818 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.98 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.81 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.81 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.8 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.79 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.75 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.75 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.74 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.74 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.74 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.73 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.73 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.7 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.7 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.68 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.68 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.67 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.66 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.65 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.64 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.63 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.62 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.62 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.62 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.61 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.61 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.61 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.6 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.57 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.56 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.56 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.56 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.56 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.54 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.54 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.54 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.52 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.51 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.45 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.45 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.45 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.43 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.43 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.42 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.42 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.41 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.41 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.41 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.41 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.41 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.4 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.4 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.4 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.39 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.39 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.38 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.38 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.37 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.37 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.37 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.37 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.37 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.36 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.36 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.36 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.35 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.34 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.34 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.34 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.34 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.34 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.33 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.32 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.32 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.31 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.31 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.31 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.31 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.31 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.31 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.31 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.31 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.3 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.3 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.3 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.3 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.3 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.3 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.3 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.29 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.29 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.28 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.28 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.28 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.28 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.28 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.28 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.27 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.27 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.27 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.27 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.27 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.27 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.26 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.26 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.26 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.26 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.26 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.26 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.26 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.26 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.26 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.26 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.25 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.25 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.25 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.25 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.25 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.25 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.25 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.25 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.25 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.25 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.25 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.25 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.24 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.24 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.24 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.24 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.24 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.24 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.23 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.23 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.23 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.23 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.22 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.22 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.22 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.22 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.22 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.22 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.22 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.22 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.22 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.22 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.21 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.21 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.21 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.21 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.21 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.21 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.21 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.21 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.21 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.2 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.2 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.2 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.2 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.2 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.2 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.2 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.2 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.19 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.19 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.19 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.19 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.19 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.19 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.19 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.18 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.18 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.18 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.18 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.18 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.18 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.18 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.18 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.17 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.17 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.17 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.16 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.16 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.16 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.16 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.16 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.16 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.16 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.16 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.16 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.16 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.16 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.15 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.15 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.15 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.15 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.15 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.15 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.14 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.14 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.14 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.14 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.14 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.14 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.14 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.14 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.13 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.13 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.13 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.13 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.13 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.12 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.12 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.12 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.12 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.12 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.12 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.11 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.11 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.11 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.11 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.1 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.1 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.1 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.1 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.1 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.1 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.1 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.1 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.1 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.1 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.1 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.09 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.09 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.09 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.09 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.09 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.09 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.08 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.08 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.08 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.08 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.08 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.07 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.07 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.07 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.07 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.07 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.07 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.07 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.07 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.06 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.06 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.06 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.05 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.05 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.05 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.05 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.05 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.05 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.05 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.04 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.04 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.04 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.04 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.04 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.03 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.03 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.03 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.02 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.02 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.02 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.02 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.01 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.01 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.0 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 98.98 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 98.98 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 98.94 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 98.94 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.86 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 98.83 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.8 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.74 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.57 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 98.55 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.46 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 98.41 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.3 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.29 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 98.25 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.06 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.83 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.78 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 97.73 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 97.24 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.94 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.84 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 96.12 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.71 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.4 | |
| 2ks1_B | 44 | Epidermal growth factor receptor; ERBB1, ERBB2, tr | 92.89 | |
| 2l2t_A | 44 | Receptor tyrosine-protein kinase ERBB-4; transmemb | 91.27 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 87.5 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-68 Score=634.68 Aligned_cols=536 Identities=32% Similarity=0.474 Sum_probs=376.2
Q ss_pred CCCCHHHHHHHHcCCCC-----CCCCCCCCCCCCCCCccceeeCCCCCEEEEEec--CCccc---cC-------------
Q 003465 34 IVPIRLEREALLNTGWW-----NNSREKASNHSDHCKWAGIVCNLNGSIIRISLS--GVNGI---RG------------- 90 (818)
Q Consensus 34 ~~~~~~~~~~ll~~~~~-----~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~--~~~g~---~~------------- 90 (818)
..+.+.||+||+++|.. .+++|. .++|||+|.||+|+ +|+|+.+++. ++.|. +.
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~~l~~W~--~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKNLLPDWS--SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTTSSTTCC--TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcccccCCC--CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 34567899999987543 467896 47899999999999 7999999994 34443 10
Q ss_pred -------CCCCCCcCCCCCCcEEEcCCCCCcccCCc--cccCCCcCceecccCcccccCCCCCC-CCCCCCcEEECcCCC
Q 003465 91 -------KLDQFNFSCFPNLESFRIWYSNISGNIPS--EIGALSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRSN 160 (818)
Q Consensus 91 -------~l~~~~l~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~ 160 (818)
.++. .|..+++|++|+|++|.+.+.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|.
T Consensus 84 ~~~~~~~~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 84 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CTTSCEEECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CcCCCcCCCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 0112 388899999999999999988888 88899999999999888877666544 445555555555544
Q ss_pred CCCCCccc-------------------------cCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCc
Q 003465 161 LNGPIPST-------------------------LGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPL 215 (818)
Q Consensus 161 l~~~~p~~-------------------------l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 215 (818)
+++..|.. +..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence 43322211 12334444444444444443333 44444444444444444433333
Q ss_pred cccCCCCCCE----------------------EEccCCcCCCCCCCCCCCC-CcceEEEccCCCCCCCCCccccCCCCCc
Q 003465 216 DFGNLRHLKE----------------------VDLSGNKLNGPIASTIGDL-TNLNSLDLSSKQLSGPLPQEIGYLENLV 272 (818)
Q Consensus 216 ~l~~l~~L~~----------------------L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 272 (818)
.+.++++|++ |++++|.+++.+|..+... ++|++|++++|.+++.+|..++.+++|+
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 3333333333 3333333333344444333 5555555555555555555554444444
Q ss_pred EEEccccccCCcCCcc-cCCCC---------------------------------------------------CCCEEEc
Q 003465 273 YLSLNVNNLTGPIPST-LGRLT---------------------------------------------------SLSDLDL 300 (818)
Q Consensus 273 ~L~L~~n~l~~~~~~~-l~~l~---------------------------------------------------~L~~L~L 300 (818)
+|++++|.+++.+|.. +..++ +|++|++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 4444444444333322 33333 3444444
Q ss_pred cCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCC
Q 003465 301 SHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGP 380 (818)
Q Consensus 301 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 380 (818)
++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 44444445555666667777777777777777777777777777777777777777777778888888888888888888
Q ss_pred CCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcC
Q 003465 381 IPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQ 460 (818)
Q Consensus 381 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 460 (818)
+|..+..+++|++|++++|++++.+|.++..+++|+.|++++|++++.+|..+.++++|+.|++++|+++|.+|..++..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 88888888888888888888888888888888888888888888888888888888999999999999988888776542
Q ss_pred cccc----------------------------------------------------------------ccccccEEECCC
Q 003465 461 KHSI----------------------------------------------------------------RDRLLTYVNHQF 476 (818)
Q Consensus 461 ~~~~----------------------------------------------------------------~~~~L~~l~ls~ 476 (818)
.... ....++.||+++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 1100 013578999999
Q ss_pred CcCcccCCcccccccC----------CcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCC
Q 003465 477 NRLSGQIPMTIGGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP 546 (818)
Q Consensus 477 n~l~g~~p~~~~~~~~----------l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 546 (818)
|+++|.+|..++.+.. ++|.||+.++++++|+.||||+|+++|.+|..++.+++|++||+|+|+++|.||
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 9999999999987765 789999999999999999999999999999999999999999999999999999
Q ss_pred c-ccccCCCCCcccCcCCCC-CCCCCCCCCCCC
Q 003465 547 E-FINRIMPADLVPMINFSI-SPTPSPASPQQE 577 (818)
Q Consensus 547 ~-~~~~~~~~~~~~~n~~~~-~~~~~~~~~~~~ 577 (818)
+ +++.+++..+|.||+++| .|.+ +|...
T Consensus 722 ~~~~~~~~~~~~~~gN~~Lcg~~l~---~C~~~ 751 (768)
T 3rgz_A 722 EMGQFETFPPAKFLNNPGLCGYPLP---RCDPS 751 (768)
T ss_dssp SSSSGGGSCGGGGCSCTEEESTTSC---CCCSC
T ss_pred CchhhccCCHHHhcCCchhcCCCCc---CCCCC
Confidence 9 889999999999999999 5543 67643
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-54 Score=513.74 Aligned_cols=458 Identities=34% Similarity=0.476 Sum_probs=340.9
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCC--CCCCCCCCcEEECcCCCCCCCCcccc-CCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPS--KLGNLNNLVELYLSRSNLNGPIPSTL-GHLT 173 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~ 173 (818)
+.++++|+.++++.+.+. .+|..|+++++|++|+|++|.+++.+|. .++++++|++|+|++|.+.+.+|..+ .+++
T Consensus 73 l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp TTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred HhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 778899999999988775 3678899999999999999999998888 89999999999999999998888766 8899
Q ss_pred CCCEEEccCCCCCCCCccC-------------------------CCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEc
Q 003465 174 RLSILDLSSNSLVGPIPFT-------------------------LGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDL 228 (818)
Q Consensus 174 ~L~~L~L~~n~l~~~~~~~-------------------------l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 228 (818)
+|++|+|++|.+++..|.. +..+++|++|++++|.+++.+|. ++++++|++|++
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L 230 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEEC
Confidence 9999999999887654432 25678889999999999987777 999999999999
Q ss_pred cCCcCCCCCCCCCCCCCcceEEEccCCCCCC----------------------CCCccccCC-CCCcEEEccccccCCcC
Q 003465 229 SGNKLNGPIASTIGDLTNLNSLDLSSKQLSG----------------------PLPQEIGYL-ENLVYLSLNVNNLTGPI 285 (818)
Q Consensus 229 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----------------------~~~~~l~~l-~~L~~L~L~~n~l~~~~ 285 (818)
++|.+++..+..+..+++|++|++++|.+++ .+|..+... ++|++|++++|.+++.+
T Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 9999998777777777777777777766553 455666554 99999999999999999
Q ss_pred CcccCCCCCCCEEEccCCcCCCCCchh-hcCCCCCCeeeccCCcCCCCcC------------------------------
Q 003465 286 PSTLGRLTSLSDLDLSHNSLFGPIPPT-LSHLTRLTTLKLFSNQINGSIP------------------------------ 334 (818)
Q Consensus 286 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~------------------------------ 334 (818)
|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++.+.+|
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 999999999999999999988666654 6666666666666665543333
Q ss_pred ---------------------ccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCE
Q 003465 335 ---------------------LGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKF 393 (818)
Q Consensus 335 ---------------------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 393 (818)
..+..+++|+.|++++|++.+..|..++.+++|+.|++++|.+++.+|..+..+++|++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 33344445555555555555555555555555666666666665556666666666666
Q ss_pred EEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEE
Q 003465 394 LNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVN 473 (818)
Q Consensus 394 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ 473 (818)
|++++|++++.+|..+..+++|+.|++++|++++.+|.++..+++|+.|++++|++++.+|..+..+. .|+.|+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~------~L~~L~ 544 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR------SLIWLD 544 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT------TCCEEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC------CCCEEE
Confidence 66666666666666666666677777777776666666666677777777777777766666666655 788899
Q ss_pred CCCCcCcccCCcccccc---------------------------------------------------------------
Q 003465 474 HQFNRLSGQIPMTIGGL--------------------------------------------------------------- 490 (818)
Q Consensus 474 ls~n~l~g~~p~~~~~~--------------------------------------------------------------- 490 (818)
+++|.++|.+|..+..+
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 99998888888654321
Q ss_pred -----------------cCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc--cccc
Q 003465 491 -----------------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINR 551 (818)
Q Consensus 491 -----------------~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~ 551 (818)
..++|.||..++++++|+.|||++|+++|.+|..++++++|++||||+|+++|.||+ ....
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 014567777777777777777777777777777777777777777777777777776 3333
Q ss_pred CCCCCcccCcC
Q 003465 552 IMPADLVPMIN 562 (818)
Q Consensus 552 ~~~~~~~~~n~ 562 (818)
.+....+++|.
T Consensus 705 ~L~~L~ls~N~ 715 (768)
T 3rgz_A 705 MLTEIDLSNNN 715 (768)
T ss_dssp CCSEEECCSSE
T ss_pred CCCEEECcCCc
Confidence 44444455553
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-53 Score=493.42 Aligned_cols=472 Identities=21% Similarity=0.292 Sum_probs=351.6
Q ss_pred HHHHHHHHcC-------CCCCC-------CCCCCCCCCCCCCc---cceeeCCCCCEEEEEe--cCCccccCCCCCCCcC
Q 003465 38 RLEREALLNT-------GWWNN-------SREKASNHSDHCKW---AGIVCNLNGSIIRISL--SGVNGIRGKLDQFNFS 98 (818)
Q Consensus 38 ~~~~~~ll~~-------~~~~~-------~~~~~~~~~~~c~w---~gv~c~~~~~v~~l~l--~~~~g~~~~l~~~~l~ 98 (818)
..|+.||... .|... .+|. .+.|||.| .||+|+..|+|++|++ .++.|.+ ++. +.
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~--~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l---p~~-l~ 102 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN--FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV---PDA-IG 102 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCC--CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE---CGG-GG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC--CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC---ChH-Hh
Confidence 4688899863 23322 2686 46899999 9999988899999999 4566766 654 99
Q ss_pred CCCCCcEEEcCCCCC------cc------cCCccccCCCcCceecccCcccccCCCCCCCCC------------------
Q 003465 99 CFPNLESFRIWYSNI------SG------NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNL------------------ 148 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l------------------ 148 (818)
+|++|++|+|++|.+ .+ .+|... +..|+ +++++|.+.+.+|..+..+
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 999999999999976 22 334333 45666 7777777776666555421
Q ss_pred -CCCcEEECc--CCCCCCCCccccCCCCCCCEEEccCCCCCCC-----------------CccCCC--CCCCCcEEEccc
Q 003465 149 -NNLVELYLS--RSNLNGPIPSTLGHLTRLSILDLSSNSLVGP-----------------IPFTLG--HLTQLTTLKLFS 206 (818)
Q Consensus 149 -~~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~ 206 (818)
..++.+.+. +|++++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|++++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~ 258 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence 112222222 466766 777788888888888888888764 777777 888888888888
Q ss_pred CcCCccCCccccCCCCCCEEEccCCc-CCC-CCCCCCCCC------CcceEEEccCCCCCCCCCc--cccCCCCCcEEEc
Q 003465 207 NQINGCIPLDFGNLRHLKEVDLSGNK-LNG-PIASTIGDL------TNLNSLDLSSKQLSGPLPQ--EIGYLENLVYLSL 276 (818)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L 276 (818)
|.+.+.+|..|+++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++.+++|++|++
T Consensus 259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence 88888888888888888888888887 776 667666655 78888888888888 6777 7888888888888
Q ss_pred cccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCC-CCeeeccCCcCCCCcCccccCCC--CCCEEEcCCCcc
Q 003465 277 NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTR-LTTLKLFSNQINGSIPLGIGNLE--NLERVDMSSNKL 353 (818)
Q Consensus 277 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l 353 (818)
++|.++|.+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++ +|+.|++++|.+
T Consensus 338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred cCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 8888887777 7777888888888888887 66777888888 888888888887 6777666544 788888888888
Q ss_pred cccCCcCcC-------CCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccC-C-------CCCCEE
Q 003465 354 EGPIPLTIG-------DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMN-C-------FSLQSL 418 (818)
Q Consensus 354 ~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l-------~~L~~L 418 (818)
.+..|..+. .+++|+.|++++|.++...+..+..+++|++|+|++|+++ .+|..+.. . ++|+.|
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEE
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEE
Confidence 887777777 7778888888888888544445666888888888888888 45543322 2 278888
Q ss_pred ecccCcCcccCCcccc--CCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCccc
Q 003465 419 ILSNNSLTGRIPSEIR--NLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGS 496 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ 496 (818)
++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+. .|+.|++++|+.. ....+.+.
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~------~L~~L~Ls~N~~l--------s~N~l~~~ 557 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS------TLKGFGIRNQRDA--------QGNRTLRE 557 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS------SCCEEECCSCBCT--------TCCBCCCC
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC------CCCEEECCCCccc--------ccCccccc
Confidence 88888888 6777776 88888888888888887 677777666 7888888554311 01123344
Q ss_pred CChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcc
Q 003465 497 VPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPG 543 (818)
Q Consensus 497 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 543 (818)
+|..++++++|+.|+|++|++ +.+|..+. ++|+.||+++|++..
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 555888899999999999999 78888766 799999999998763
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-50 Score=469.63 Aligned_cols=466 Identities=21% Similarity=0.194 Sum_probs=357.6
Q ss_pred CEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEE
Q 003465 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155 (818)
Q Consensus 76 ~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 155 (818)
.++.|++.+- .+..+++.+|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 34 ~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFN--VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTC--CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCC--ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 5677777321 12223455588999999999999999888888999999999999999999888888899999999999
Q ss_pred CcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCC--EEEccCCcC
Q 003465 156 LSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK--EVDLSGNKL 233 (818)
Q Consensus 156 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~l 233 (818)
+++|.+++..|..+.++++|++|++++|.+++.....+..+++|++|++++|.+++..+..++.+++|+ +|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999876677889999999999999998875444555589999999999999888788888899998 889999988
Q ss_pred CCCCCCCCCCC---------------------------------------------------CcceEEEccCCCCCCCCC
Q 003465 234 NGPIASTIGDL---------------------------------------------------TNLNSLDLSSKQLSGPLP 262 (818)
Q Consensus 234 ~~~~~~~l~~l---------------------------------------------------~~L~~L~L~~n~l~~~~~ 262 (818)
.+..+..+... .+|+.|++++|.+++..+
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 87666554321 156677777777776666
Q ss_pred ccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcc-ccCCC
Q 003465 263 QEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLG-IGNLE 341 (818)
Q Consensus 263 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~ 341 (818)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.. +..++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 66777777777777777777 56666777777777777777777666667777777777777777776555543 67777
Q ss_pred CCCEEEcCCCcccccC--CcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCcc-ccCCCCCCEE
Q 003465 342 NLERVDMSSNKLEGPI--PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQSL 418 (818)
Q Consensus 342 ~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L 418 (818)
+|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.. +..+++|+.|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 7777777777776554 566777777777777777777776777777777777777777777655443 6677777777
Q ss_pred ecccCcCcccCCccccCCCCCCEEECcCCcCCccC---ChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcc
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT---PPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSG 495 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g 495 (818)
++++|.+.+..|..+..+++|++|++++|++++.. +..+..+. .|+.|++++|.+++..|.
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~---------- 494 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG------RLEILVLSFCDLSSIDQH---------- 494 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT------TCCEEECTTSCCCEECTT----------
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC------CccEEECCCCccCccChh----------
Confidence 77777777767777777777777777777776531 12333344 677777777777765554
Q ss_pred cCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCCC
Q 003465 496 SVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFSI 565 (818)
Q Consensus 496 ~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~~ 565 (818)
.++.+++|+.|||++|++++.+|..+..++.| +|++++|++++.+|. .....+....+.+|+..|
T Consensus 495 ----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 495 ----AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp ----TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ----hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 78889999999999999999999999999999 999999999987776 345566777788888777
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-50 Score=475.07 Aligned_cols=465 Identities=20% Similarity=0.243 Sum_probs=260.8
Q ss_pred CCHHHHHHHHcCCCC-CCCCCCCCC---CCCC--CCc------------cceeeCCCCCEEEEEe--cCCccccCCCCCC
Q 003465 36 PIRLEREALLNTGWW-NNSREKASN---HSDH--CKW------------AGIVCNLNGSIIRISL--SGVNGIRGKLDQF 95 (818)
Q Consensus 36 ~~~~~~~~ll~~~~~-~~~~~~~~~---~~~~--c~w------------~gv~c~~~~~v~~l~l--~~~~g~~~~l~~~ 95 (818)
+...|++||+.++.. ...+|.... ..+| |.| .||.|+..|+|+.|++ .++.|.+ ++.
T Consensus 266 ~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i---p~~ 342 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV---PDA 342 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE---CGG
T ss_pred cchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC---chH
Confidence 345799999985421 122564322 2355 999 9999998899999999 4566666 655
Q ss_pred CcCCCCCCcEEEc-CCCCCcccCCcccc---------------------------------------------------C
Q 003465 96 NFSCFPNLESFRI-WYSNISGNIPSEIG---------------------------------------------------A 123 (818)
Q Consensus 96 ~l~~l~~L~~L~L-~~n~~~~~~~~~~~---------------------------------------------------~ 123 (818)
|.+|++|++|+| ++|.+.|..|.... .
T Consensus 343 -l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 343 -IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp -GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred -HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 899999999999 78877766332211 1
Q ss_pred CCcCceecccC--cccccCCCCCCCCCCCCcEEECcCCCCCC-----------------CCccccC--CCCCCCEEEccC
Q 003465 124 LSKLQILDLSH--NNLTGTIPSKLGNLNNLVELYLSRSNLNG-----------------PIPSTLG--HLTRLSILDLSS 182 (818)
Q Consensus 124 l~~L~~L~Ls~--n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~L~~ 182 (818)
...++.+.+.. |++++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++
T Consensus 422 ~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred ccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 11222222222 44444 44455555555555555555554 1444443 444444444444
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccCc-CCc-cCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSNQ-ING-CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
|.+.+.+|..++++++|++|++++|+ +++ .+|..+++++ ..+..+++|+.|++++|.++ .
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-----------------~~~~~l~~L~~L~Ls~N~L~-~ 562 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-----------------DDEDTGPKIQIFYMGYNNLE-E 562 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------HCTTTTTTCCEEECCSSCCC-B
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh-----------------hcccccCCccEEEeeCCcCC-c
Confidence 44444444444444444444444444 443 3343333222 01122235555555555555 4
Q ss_pred CCc--cccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCC-CCeeeccCCcCCCCcCccc
Q 003465 261 LPQ--EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTR-LTTLKLFSNQINGSIPLGI 337 (818)
Q Consensus 261 ~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l 337 (818)
+|. .+..+++|++|+|++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|+|++|++. .+|..+
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 444 4555555555555555555 444 4555555555555555555 45555555555 555555555555 445444
Q ss_pred cCCCC--CCEEEcCCCcccccCCcC---cC--CCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCcccc
Q 003465 338 GNLEN--LERVDMSSNKLEGPIPLT---IG--DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELM 410 (818)
Q Consensus 338 ~~l~~--L~~L~Ls~n~l~~~~~~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 410 (818)
..++. |+.|++++|++.+.+|.. +. .+++|+.|++++|.++...+..+..+++|+.|+|++|+++ .+|..+.
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 717 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSL 717 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHh
Confidence 44332 555556555555443321 11 2235666666666665322222345566666666666665 3443332
Q ss_pred CC--------CCCCEEecccCcCcccCCcccc--CCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCc
Q 003465 411 NC--------FSLQSLILSNNSLTGRIPSEIR--NLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLS 480 (818)
Q Consensus 411 ~l--------~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~ 480 (818)
.. ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+. .|+.|++++|+.
T Consensus 718 ~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~------~L~~L~Ls~N~~- 788 (876)
T 4ecn_A 718 KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS------QLKAFGIRHQRD- 788 (876)
T ss_dssp SCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT------TCCEEECCCCBC-
T ss_pred ccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC------CCCEEECCCCCC-
Confidence 21 25666666666666 5555554 66666666666666665 355555444 566666655330
Q ss_pred ccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 481 GQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 481 g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
.....+.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.||||+|++...-+.
T Consensus 789 -------ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 789 -------AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp -------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred -------cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence 001123344555888999999999999999 88898866 6999999999998654443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=461.09 Aligned_cols=482 Identities=24% Similarity=0.246 Sum_probs=332.9
Q ss_pred CCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEE
Q 003465 75 GSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154 (818)
Q Consensus 75 ~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 154 (818)
.+++.|++.+- .+..+++..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|+++++|++|
T Consensus 25 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCC--CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 46778887431 1223355558999999999999999998889999999999999999999996555679999999999
Q ss_pred ECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCcccc--CCCCCCEEEccCCc
Q 003465 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFG--NLRHLKEVDLSGNK 232 (818)
Q Consensus 155 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~ 232 (818)
++++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999877778899999999999999999988888889999999999999998876665543 45778888888777
Q ss_pred CCCCCCCCCCCC---------------------------Cc--------------------------ceEEEccCCCCCC
Q 003465 233 LNGPIASTIGDL---------------------------TN--------------------------LNSLDLSSKQLSG 259 (818)
Q Consensus 233 l~~~~~~~l~~l---------------------------~~--------------------------L~~L~L~~n~l~~ 259 (818)
+++..+..+..+ ++ |+.|++++|.+++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 766555443322 22 5555555555554
Q ss_pred CCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCC-----CCch----hhcCCCCCCeeeccCCcCC
Q 003465 260 PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG-----PIPP----TLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 260 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~----~l~~l~~L~~L~L~~n~l~ 330 (818)
..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|...+ .+|. .+..+++|++|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 444455555555555555555554444444444444444444332221 1111 3444555566666666665
Q ss_pred CCcCccccCCCCCCEEEcCC----------------------------CcccccCCcCcCCCCCCCEEeccCCcCCCCCC
Q 003465 331 GSIPLGIGNLENLERVDMSS----------------------------NKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIP 382 (818)
Q Consensus 331 ~~~~~~l~~l~~L~~L~Ls~----------------------------n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 382 (818)
+..+..+..+++|+.|++++ |++.+..+..+..+++|+.|++++|.+++.++
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 55554555555555544444 33444444555566666666666666654433
Q ss_pred -cccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCc--ccCCccccCCCCCCEEECcCCcCCccCChhhhc
Q 003465 383 -STFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLT--GRIPSEIRNLSYLHELDLSLNFISGMTPPQHFK 459 (818)
Q Consensus 383 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 459 (818)
..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+.++++|+.|++++|.+++..+..+..
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 45566666666666666666555556666666666666666664 456777888888888888888888776665655
Q ss_pred CccccccccccEEECCCCcCcccCCc--------ccccccC----------CcccCCh-hhcCCcCCCEEECCCCcCccC
Q 003465 460 QKHSIRDRLLTYVNHQFNRLSGQIPM--------TIGGLSK----------LSGSVPS-EIGNCSGLLNVTLSNNSLDGT 520 (818)
Q Consensus 460 ~~~~~~~~~L~~l~ls~n~l~g~~p~--------~~~~~~~----------l~g~ip~-~~~~l~~L~~L~Ls~N~l~~~ 520 (818)
+. .|+.|++++|++++..+. .+.++.. ++ .+|. .|+++++|+.|||++|++++.
T Consensus 503 l~------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 503 LE------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp CT------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cc------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcC
Confidence 55 788888888888764221 1333332 33 4554 589999999999999999987
Q ss_pred CcccccCCCCCCeeeCcCCCCcccCCc--c-cccCCCCCcccCcCCCC
Q 003465 521 IPLEMGKIIFLEYLDLSYNNIPGTVPE--F-INRIMPADLVPMINFSI 565 (818)
Q Consensus 521 ~p~~l~~l~~L~~L~ls~N~l~g~ip~--~-~~~~~~~~~~~~n~~~~ 565 (818)
.+..+..+++|+.|++++|++++..|. . .+..+....+.+|+..|
T Consensus 576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 777889999999999999999987665 2 45677778889999988
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=456.65 Aligned_cols=428 Identities=20% Similarity=0.185 Sum_probs=360.6
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
++++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 68999999999999989999999999999999999998889999999999999999999998889999999999999999
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcce--EEEccCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN--SLDLSSKQLSG 259 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~ 259 (818)
+|.+++..+..++++++|++|++++|.+++.....+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+++
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 9999987788899999999999999999975545566699999999999999987788889999999 89999999987
Q ss_pred CCCccccCC---------------------------------------------------CCCcEEEccccccCCcCCcc
Q 003465 260 PLPQEIGYL---------------------------------------------------ENLVYLSLNVNNLTGPIPST 288 (818)
Q Consensus 260 ~~~~~l~~l---------------------------------------------------~~L~~L~L~~n~l~~~~~~~ 288 (818)
..|..+... .+|++|++++|.+++..+..
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 666554321 15677777888887776777
Q ss_pred cCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCc-CcCCCCCC
Q 003465 289 LGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPL-TIGDLTNL 367 (818)
Q Consensus 289 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L 367 (818)
+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++. .+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 888888888888888887 5677778888888888888888877777788888888888888887765544 47788888
Q ss_pred CEEeccCCcCCCCC--CcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCcc-ccCCCCCCEEEC
Q 003465 368 IYLDLSLNQLSGPI--PSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSE-IRNLSYLHELDL 444 (818)
Q Consensus 368 ~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L 444 (818)
++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.. +.++++|+.|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 88888888887654 667788888888888888888777778888888888888888887665543 778888888888
Q ss_pred cCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCccc
Q 003465 445 SLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE 524 (818)
Q Consensus 445 s~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~ 524 (818)
++|.+++..|..+..+. .|+.|++++|.+++.... .+..++.+++|+.|++++|++++.+|..
T Consensus 433 ~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~-----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLP------ALQHLNLQGNHFPKGNIQ-----------KTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TTCCCBTTCTTTTTTCT------TCCEEECTTCBCGGGEEC-----------SSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred CCCccCCcCHHHHhCCC------CCCEEECCCCCCCccccc-----------cchhhccCCCccEEECCCCccCccChhh
Confidence 88888877776666555 788888888888763211 1236889999999999999999999999
Q ss_pred ccCCCCCCeeeCcCCCCcccCCc
Q 003465 525 MGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 525 l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
++.+++|++|++++|++++.+|+
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGG
T ss_pred hccccCCCEEECCCCccCcCChh
Confidence 99999999999999999998887
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=470.19 Aligned_cols=482 Identities=21% Similarity=0.194 Sum_probs=377.8
Q ss_pred CCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccC-CccccCCCcCceecccCcccccCCC
Q 003465 64 CKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNI-PSEIGALSKLQILDLSHNNLTGTIP 142 (818)
Q Consensus 64 c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p 142 (818)
|.|..|.+ ....++.|++..- .+..+.+.+|.++++|++|+|++|...+.+ |..|+++++|++|+|++|.+++..|
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N--~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESC--CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCC-CCCCcCEEECCCC--cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 56777877 5677888888421 122234455999999999999999776666 7789999999999999999998889
Q ss_pred CCCCCCCCCcEEECcCCCCCCCCccc--cCCCCCCCEEEccCCCCCCCCc-cCCCCCCCCcEEEcccCcCCccCCccccC
Q 003465 143 SKLGNLNNLVELYLSRSNLNGPIPST--LGHLTRLSILDLSSNSLVGPIP-FTLGHLTQLTTLKLFSNQINGCIPLDFGN 219 (818)
Q Consensus 143 ~~~~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 219 (818)
..|+++++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++..+ ..++++++|++|++++|.+++..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999998766665 8999999999999999987654 57899999999999999999888888887
Q ss_pred C--CCCCEEEccCCcCCCCCCCCCCCCCc------ceEEEccCCCCCCCCCccccC------------------------
Q 003465 220 L--RHLKEVDLSGNKLNGPIASTIGDLTN------LNSLDLSSKQLSGPLPQEIGY------------------------ 267 (818)
Q Consensus 220 l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~------------------------ 267 (818)
+ ++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+++..+..+..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 7 89999999999998877777666655 999999999877665544321
Q ss_pred --------------CCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCc
Q 003465 268 --------------LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSI 333 (818)
Q Consensus 268 --------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 333 (818)
.++|++|++++|.+++..+..+..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 257888888888888777778888888888888888888777778888888888888888888777
Q ss_pred CccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCC
Q 003465 334 PLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF 413 (818)
Q Consensus 334 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 413 (818)
|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+++. ..+++|+.|++++|+++ .+|.. ..
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~ 401 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NL 401 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CT
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---cc
Confidence 77888888888888888888777777788888888888888887742 23677888888888877 44432 45
Q ss_pred CCCEEecccCcCcccC-CccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcc-----cCCccc
Q 003465 414 SLQSLILSNNSLTGRI-PSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSG-----QIPMTI 487 (818)
Q Consensus 414 ~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g-----~~p~~~ 487 (818)
+++.|++++|.+++.. +..+.++++|+.|++++|++++..+...... ...|+.|++++|.+++ ..|..+
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE-----NPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS-----CTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc-----CCccccccCCCCccccccccccchhhh
Confidence 6778888888877532 2234578888888888888887644322111 1268888888888863 333334
Q ss_pred ccccC----------CcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCcccccCCCCCc
Q 003465 488 GGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADL 557 (818)
Q Consensus 488 ~~~~~----------l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~ 557 (818)
..+.. +++..|..++.+++|+.|+|++|++++..|..+. ++|+.||+++|++++.+|+. +..+....
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-~~~L~~l~ 553 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-FVSLSVLD 553 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC-CSSCCEEE
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH-hCCcCEEE
Confidence 44433 4566777889999999999999999988877766 89999999999999988863 34566667
Q ss_pred ccCcCCCC
Q 003465 558 VPMINFSI 565 (818)
Q Consensus 558 ~~~n~~~~ 565 (818)
+.+|+..|
T Consensus 554 l~~Np~~C 561 (844)
T 3j0a_A 554 ITHNKFIC 561 (844)
T ss_dssp EEEECCCC
T ss_pred ecCCCccc
Confidence 78888877
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=454.01 Aligned_cols=459 Identities=21% Similarity=0.171 Sum_probs=305.2
Q ss_pred CCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEE
Q 003465 75 GSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154 (818)
Q Consensus 75 ~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 154 (818)
.+++.+++.+- .+..+++..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|+++++|++|
T Consensus 32 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFN--PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCC--CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 35677777321 1222244447888888888888888887778788888888888888888887778888888888888
Q ss_pred ECcCCCCCCCCccccCCCCCCCEEEccCCCCCC-CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCC----EEEcc
Q 003465 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK----EVDLS 229 (818)
Q Consensus 155 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~ 229 (818)
++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+..++.+++|+ +|+++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 888888886666778888888888888888875 4677888888888888888888877777776666554 78888
Q ss_pred CCcCCCCCCCCCCCCCcceEEEccCCCCCC-CCCcc--------------------------------------------
Q 003465 230 GNKLNGPIASTIGDLTNLNSLDLSSKQLSG-PLPQE-------------------------------------------- 264 (818)
Q Consensus 230 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~-------------------------------------------- 264 (818)
+|.+++..+..+... +|+.|++++|.+++ ..|..
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 888876555555444 78888888876541 11111
Q ss_pred ------------ccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCC
Q 003465 265 ------------IGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGS 332 (818)
Q Consensus 265 ------------l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 332 (818)
+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+.
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred cccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 333455555555555554 233 455555666666666655 3444 23 555666666665543332
Q ss_pred cCccccCCCCCCEEEcCCCccccc--CCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCC-ccc
Q 003465 333 IPLGIGNLENLERVDMSSNKLEGP--IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP-SEL 409 (818)
Q Consensus 333 ~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~ 409 (818)
+ .+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+..| ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 2 344556666666666655543 24455556666666666666553 33555556666666666666655544 455
Q ss_pred cCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCcc-CChhhhcCccccccccccEEECCCCcCcccCCcccc
Q 003465 410 MNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGM-TPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIG 488 (818)
Q Consensus 410 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~ 488 (818)
..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++. .|..+..+. .|+.|++++|++++..
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~----- 489 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT------NLTFLDLSKCQLEQIS----- 489 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEEC-----
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC------CCCEEECCCCcCCccC-----
Confidence 5566666666666666655555566666666666666666552 344444333 5666666666655444
Q ss_pred cccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCcc--cc-cCCCCCcccCcCCCC
Q 003465 489 GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEF--IN-RIMPADLVPMINFSI 565 (818)
Q Consensus 489 ~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~-~~~~~~~~~~n~~~~ 565 (818)
|..++.+++|+.|++++|++++.+|..++.+++|++||+++|+++ .+|.. .. ..+....+.+|+..|
T Consensus 490 ---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 490 ---------WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp ---------TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred ---------hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 447888999999999999999999999999999999999999998 67763 22 235566778888877
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=440.76 Aligned_cols=440 Identities=22% Similarity=0.204 Sum_probs=315.2
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|+|++|.+.+..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 68999999999999888888999999999999999999988999999999999999999999665567999999999999
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCC--CCCcceEEEccCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIG--DLTNLNSLDLSSKQLS 258 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~ 258 (818)
++|.+++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+. .+++|+.|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999988778899999999999999999998899999999999999999999877666543 5689999999999998
Q ss_pred CCCCccccCC---------------------------CCCcEEEccccccCCcCCcccCCCCC--CCEEEccCCcCCCCC
Q 003465 259 GPLPQEIGYL---------------------------ENLVYLSLNVNNLTGPIPSTLGRLTS--LSDLDLSHNSLFGPI 309 (818)
Q Consensus 259 ~~~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~ 309 (818)
+..|..+..+ ++|++|++++|.+++..|..+..++. |+.|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 8777655433 45566666666666666666665543 777777777776666
Q ss_pred chhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccc-----cCC----cCcCCCCCCCEEeccCCcCCCC
Q 003465 310 PPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG-----PIP----LTIGDLTNLIYLDLSLNQLSGP 380 (818)
Q Consensus 310 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~----~~l~~l~~L~~L~Ls~n~l~~~ 380 (818)
+..+..+++|++|++++|++.+..|..+..+++|+.|++++|...+ .+| ..+..+++|++|++++|.+++.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 6666777777777777777666555555555555555554433221 111 1334444444444444444444
Q ss_pred CCcccCCCC----------------------------CCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCC-c
Q 003465 381 IPSTFGHLT----------------------------LLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIP-S 431 (818)
Q Consensus 381 ~~~~~~~l~----------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~ 431 (818)
.+..|..++ +|+.|++++|++++..|..+..+++|+.|++++|.+.+.+| .
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 333333333 45555555566666667777888888888888888876655 5
Q ss_pred cccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCc--ccCCcccccccC----------CcccCCh
Q 003465 432 EIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLS--GQIPMTIGGLSK----------LSGSVPS 499 (818)
Q Consensus 432 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~--g~~p~~~~~~~~----------l~g~ip~ 499 (818)
.+.++++|++|++++|++++..+..+..+. .|+.|++++|.+. +.+|..+..+.. +++..|.
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~------~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVP------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCT------TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCc------ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 677888888888888888776665555444 5666666666655 344544444332 3334444
Q ss_pred hhcCCcCCCEEECCCCcCccCCc--------ccccCCCCCCeeeCcCCCCcccCCc
Q 003465 500 EIGNCSGLLNVTLSNNSLDGTIP--------LEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 500 ~~~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
.++.+++|+.|++++|++++..+ ..++.+++|++|++++|+++ .+|.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~ 553 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV 553 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCH
Confidence 56666667777777776665311 22566666666777666666 4554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=438.71 Aligned_cols=436 Identities=21% Similarity=0.179 Sum_probs=327.5
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 68999999999999988889999999999999999999888899999999999999999999888999999999999999
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCc-cCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcce----EEEccCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQING-CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN----SLDLSSK 255 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~n 255 (818)
++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999998877889999999999999999986 5699999999999999999999988888887776655 8999999
Q ss_pred CCCCCCCccccCCCCCcEEEccccccCC-cCCcc----------------------------------------------
Q 003465 256 QLSGPLPQEIGYLENLVYLSLNVNNLTG-PIPST---------------------------------------------- 288 (818)
Q Consensus 256 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~---------------------------------------------- 288 (818)
.+++..+..+.. .+|++|++++|.+++ ..|..
T Consensus 192 ~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 192 PIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 999665555544 489999999987652 12222
Q ss_pred ----------cCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCC
Q 003465 289 ----------LGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIP 358 (818)
Q Consensus 289 ----------l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 358 (818)
+..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+..
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-
T ss_pred cccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-
Confidence 3344556666666666542 33 455566666666666666 3555 23 5666666666666443322
Q ss_pred cCcCCCCCCCEEeccCCcCCCC--CCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCC-ccccC
Q 003465 359 LTIGDLTNLIYLDLSLNQLSGP--IPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIP-SEIRN 435 (818)
Q Consensus 359 ~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~ 435 (818)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+.+
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 445566666666666666544 24555666666666666666553 44556666666666666666665554 45566
Q ss_pred CCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCC
Q 003465 436 LSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNN 515 (818)
Q Consensus 436 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N 515 (818)
+++|+.|++++|.+++..|..+..+. .|+.|++++|.+++. .+|..++.+++|+.|++++|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~-------------~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLT------SLNTLKMAGNSFKDN-------------TLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCT------TCCEEECTTCEEGGG-------------EECSCCTTCTTCCEEECTTS
T ss_pred cccCCEEECcCCCCCccchhhhcCCC------CCCEEECCCCcCCCc-------------chHHhhccCCCCCEEECCCC
Confidence 66666666666666665555554444 566666666666542 23457889999999999999
Q ss_pred cCccCCcccccCCCCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCC
Q 003465 516 SLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFS 564 (818)
Q Consensus 516 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~ 564 (818)
++++.+|..++.+++|++|++++|++++.+|. .....+....+.+|...
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999999999999999999999999998887 33455666666676543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=434.03 Aligned_cols=442 Identities=22% Similarity=0.227 Sum_probs=281.7
Q ss_pred CCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEE
Q 003465 75 GSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154 (818)
Q Consensus 75 ~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 154 (818)
.+++.|++.+- .+..+++..|.++++|++|+|++|.+.+..+..|+++++|++|+|++|.+++..|..|.++++|++|
T Consensus 28 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSC--CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCC--ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 35667777321 1222244458888888888888888887777788888888888888888887777788888888888
Q ss_pred ECcCCCCCCCCccccCCCCCCCEEEccCCCCCC-CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCC----CEEEcc
Q 003465 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHL----KEVDLS 229 (818)
Q Consensus 155 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~ 229 (818)
++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++| ++|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 888888886555568888888888888888876 467888888888888888888887777778777777 788888
Q ss_pred CCcCCCCCCCCCCCCCcceEEEccCCCC----------------------------------------------------
Q 003465 230 GNKLNGPIASTIGDLTNLNSLDLSSKQL---------------------------------------------------- 257 (818)
Q Consensus 230 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l---------------------------------------------------- 257 (818)
+|.+.+..+..+... +|+.|++++|..
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 888887767666655 788888777622
Q ss_pred ------CCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCC
Q 003465 258 ------SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQING 331 (818)
Q Consensus 258 ------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 331 (818)
.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence 2223334444555555555555555 344445555 5555555555554 2332 345555555555555544
Q ss_pred CcCccccCCCCCCEEEcCCCcccccC--CcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCC-cc
Q 003465 332 SIPLGIGNLENLERVDMSSNKLEGPI--PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP-SE 408 (818)
Q Consensus 332 ~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~ 408 (818)
..+. ..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 3333 44555555555555555332 34445555555555555555543332 5555555556665555554433 34
Q ss_pred ccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCC-ccCChhhhcCccccccccccEEECCCCcCcccCCccc
Q 003465 409 LMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS-GMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTI 487 (818)
Q Consensus 409 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~ 487 (818)
+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+. .|+.|++++|++++..|.
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~------~L~~L~l~~n~l~~~~~~-- 488 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------NLTFLDLSQCQLEQLSPT-- 488 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEECTT--
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc------CCCEEECCCCccccCChh--
Confidence 455555556666555555555555555555566666555554 33444443333 555555555555544333
Q ss_pred ccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 488 GGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 488 ~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
.++.+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|.
T Consensus 489 ------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 489 ------------AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ------------hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 556666666666666666666666666666666666666666666664
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=450.26 Aligned_cols=451 Identities=24% Similarity=0.222 Sum_probs=370.4
Q ss_pred CCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCC-CCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTI-PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 100 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.+++++|+|++|.+++..|..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 468999999999999999999999999999999999766555 7889999999999999999998889999999999999
Q ss_pred EccCCCCCCCCccC--CCCCCCCcEEEcccCcCCccCC-ccccCCCCCCEEEccCCcCCCCCCCCCCCC--CcceEEEcc
Q 003465 179 DLSSNSLVGPIPFT--LGHLTQLTTLKLFSNQINGCIP-LDFGNLRHLKEVDLSGNKLNGPIASTIGDL--TNLNSLDLS 253 (818)
Q Consensus 179 ~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~ 253 (818)
+|++|.+++..|.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999999866665 8999999999999999987655 579999999999999999998888888877 899999999
Q ss_pred CCCCCCCCCccccCCCC------CcEEEccccccCCcCCcccCC------------------------------------
Q 003465 254 SKQLSGPLPQEIGYLEN------LVYLSLNVNNLTGPIPSTLGR------------------------------------ 291 (818)
Q Consensus 254 ~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~------------------------------------ 291 (818)
+|.+.+..|..+..+.+ |++|++++|.+++..+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 99999988877776665 999999999887655543321
Q ss_pred --CCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCE
Q 003465 292 --LTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIY 369 (818)
Q Consensus 292 --l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 369 (818)
.++|+.|++++|.+.+..+..+..+++|+.|+|++|++.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 257888888888888777778888888888888888888777777888888888888888888777888888888888
Q ss_pred EeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcC
Q 003465 370 LDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFI 449 (818)
Q Consensus 370 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 449 (818)
|++++|.+.+..+..|..+++|+.|++++|.+++. + .+++|+.|++++|+++ .+|.. ..+++.|++++|.+
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRL 413 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc---ccccceeecccCcc
Confidence 88888888877777788888888888888888742 2 3678888888888887 45543 46788899999998
Q ss_pred CccCChhh-hcCccccccccccEEECCCCcCcccCCcc----cccccC-------Cc-----ccCChhhcCCcCCCEEEC
Q 003465 450 SGMTPPQH-FKQKHSIRDRLLTYVNHQFNRLSGQIPMT----IGGLSK-------LS-----GSVPSEIGNCSGLLNVTL 512 (818)
Q Consensus 450 ~~~~p~~~-~~~~~~~~~~~L~~l~ls~n~l~g~~p~~----~~~~~~-------l~-----g~ip~~~~~l~~L~~L~L 512 (818)
++...... ..+. .|+.|++++|++++..+.. ...+.. ++ +..|..+..+++|+.|||
T Consensus 414 ~~l~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 414 ENLDILYFLLRVP------HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CSSTTHHHHTTCT------TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred ccCchhhhhhcCC------ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 87643322 2333 8999999999999654431 112211 22 455677899999999999
Q ss_pred CCCcCccCCcccccCCCCCCeeeCcCCCCcccCCcccccCCCCCcccCcCCCC
Q 003465 513 SNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMINFSI 565 (818)
Q Consensus 513 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~n~~~~ 565 (818)
++|++++.+|..+..+++|+.|+|++|++++..|......+....+.+|.-..
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLA 540 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCC
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCC
Confidence 99999999999999999999999999999986665433455555555654433
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=430.62 Aligned_cols=456 Identities=20% Similarity=0.212 Sum_probs=309.0
Q ss_pred CCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCC
Q 003465 63 HCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIP 142 (818)
Q Consensus 63 ~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 142 (818)
.|.|.|+ |+..+. .+..+|.. + .++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|
T Consensus 3 ~C~~~~~-c~~~~~-----------~l~~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 67 (549)
T 2z81_A 3 SCDASGV-CDGRSR-----------SFTSIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67 (549)
T ss_dssp EECTTSE-EECTTS-----------CCSSCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT
T ss_pred cCCCCce-EECCCC-----------cccccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh
Confidence 4999998 864321 12222433 3 2689999999999998888899999999999999999998888
Q ss_pred CCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCC-CCccCCCCCCCCcEEEcccCcCCccC-CccccCC
Q 003465 143 SKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCI-PLDFGNL 220 (818)
Q Consensus 143 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l 220 (818)
..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+ +..|.++
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 899999999999999999998777779999999999999999986 35678899999999999999844444 4679999
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCcc-ccCCCCCcEEEccccccCCcC--C-cccCCCCCCC
Q 003465 221 RHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQE-IGYLENLVYLSLNVNNLTGPI--P-STLGRLTSLS 296 (818)
Q Consensus 221 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~--~-~~l~~l~~L~ 296 (818)
++|++|++++|.+++..+..+..+++|+.|++++|.+.. +|.. +..+++|++|++++|.+++.. + .....+++|+
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence 999999999999998888999999999999999988763 3433 356889999999999888642 1 1223456677
Q ss_pred EEEccCCcCCCCCch----hhcCCCCCCeeeccCCcCCCCc-----------------------------------Cccc
Q 003465 297 DLDLSHNSLFGPIPP----TLSHLTRLTTLKLFSNQINGSI-----------------------------------PLGI 337 (818)
Q Consensus 297 ~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~-----------------------------------~~~l 337 (818)
.|++++|.+.+..+. .+..+++|+.|++++|.+.+.. +..+
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred ceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence 777777665543222 2233445555555554433210 0001
Q ss_pred cCCCCCCEEEcCCCcccccCCcCc-CCCCCCCEEeccCCcCCCCCC---cccCCCCCCCEEEccCCcCcccCC--ccccC
Q 003465 338 GNLENLERVDMSSNKLEGPIPLTI-GDLTNLIYLDLSLNQLSGPIP---STFGHLTLLKFLNLNSNKLNGSIP--SELMN 411 (818)
Q Consensus 338 ~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~ 411 (818)
...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+ ..+..
T Consensus 307 ~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 307 SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp HHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred hhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 12345677777777765 445444 457777777777777776543 235667777777777777764422 34666
Q ss_pred CCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCccccccc
Q 003465 412 CFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLS 491 (818)
Q Consensus 412 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~ 491 (818)
+++|++|++++|+++ .+|..+..+++|++|++++|.+++.. ..+. ..|+.|++++|++++.+
T Consensus 386 l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~~--------~~L~~L~Ls~N~l~~~~-------- 447 (549)
T 2z81_A 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCIP--------QTLEVLDVSNNNLDSFS-------- 447 (549)
T ss_dssp CTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTSC--------TTCSEEECCSSCCSCCC--------
T ss_pred CCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-chhc--------CCceEEECCCCChhhhc--------
Confidence 777777777777777 56666777777777777777776432 2111 15677777777776532
Q ss_pred CCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCCC
Q 003465 492 KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFSI 565 (818)
Q Consensus 492 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~~ 565 (818)
+.+++|+.|||++|+++ .+|. .+.+++|++||+++|++++.+|. .....+....+.+|+..|
T Consensus 448 ----------~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 448 ----------LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp ----------CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred ----------ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 23445555555555554 3443 24455555555555555554443 223333444444554444
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=428.93 Aligned_cols=437 Identities=21% Similarity=0.210 Sum_probs=345.0
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 47999999999999988889999999999999999999887889999999999999999999878889999999999999
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCc-cCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcc----eEEEccCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQING-CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNL----NSLDLSSK 255 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~L~~n 255 (818)
++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..+..+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999997766679999999999999999987 468999999999999999999998777888888888 89999999
Q ss_pred CCCCCCCccccCCCCCcEEEccccc-------------------------------------------------------
Q 003465 256 QLSGPLPQEIGYLENLVYLSLNVNN------------------------------------------------------- 280 (818)
Q Consensus 256 ~l~~~~~~~l~~l~~L~~L~L~~n~------------------------------------------------------- 280 (818)
.+++..+..+... +|++|++++|.
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 9998777776655 78888888762
Q ss_pred ---cCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccC
Q 003465 281 ---LTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357 (818)
Q Consensus 281 ---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 357 (818)
+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 22334455556677777777777765 355556666 7777777777766 4443 35667777777777766544
Q ss_pred CcCcCCCCCCCEEeccCCcCCCCC--CcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCC-cccc
Q 003465 358 PLTIGDLTNLIYLDLSLNQLSGPI--PSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIP-SEIR 434 (818)
Q Consensus 358 ~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~ 434 (818)
+. ..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+.
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 43 56677777777777776543 45566777777777777777654333 6777777777777777765544 3566
Q ss_pred CCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCC
Q 003465 435 NLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSN 514 (818)
Q Consensus 435 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~ 514 (818)
++++|++|++++|.+.+..|..+..+. .|+.|++++|.+++ +.+|..++.+++|+.|++++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~-------------~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLS------SLEVLKMAGNSFQE-------------NFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCT------TCCEEECTTCEEGG-------------GEECSCCTTCTTCCEEECTT
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCC------cCcEEECcCCcCcc-------------ccchhhhhcccCCCEEECCC
Confidence 777777777777777776666555555 67777777777662 23444888999999999999
Q ss_pred CcCccCCcccccCCCCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCCC
Q 003465 515 NSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFSI 565 (818)
Q Consensus 515 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~~ 565 (818)
|++++..|..++.+++|++|++++|++++..|. .....+....+.+|+..|
T Consensus 480 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 999999999999999999999999999987775 334556666778888777
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-47 Score=442.81 Aligned_cols=433 Identities=20% Similarity=0.259 Sum_probs=372.8
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccc------c------CCCCCCCCCCCCcEEECcCCCCCCCCccc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLT------G------TIPSKLGNLNNLVELYLSRSNLNGPIPST 168 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~------~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 168 (818)
.+++.|+|+++.+.|.+|++|+++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 46899999999999999999999999999999999762 2 223222 45677 888888887777766
Q ss_pred cCC-------------------CCCCCEEEcc--CCCCCCCCccCCCCCCCCcEEEcccCcCCcc---------------
Q 003465 169 LGH-------------------LTRLSILDLS--SNSLVGPIPFTLGHLTQLTTLKLFSNQINGC--------------- 212 (818)
Q Consensus 169 l~~-------------------l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--------------- 212 (818)
+.. ...++.+.+. .|.+++ +|..++++++|++|+|++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 551 1122322232 578887 899999999999999999999985
Q ss_pred --CCcccc--CCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC-CCC-CCCccccCC------CCCcEEEccccc
Q 003465 213 --IPLDFG--NLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ-LSG-PLPQEIGYL------ENLVYLSLNVNN 280 (818)
Q Consensus 213 --~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~ 280 (818)
+|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 899999 99999999999999999999999999999999999998 988 788888776 999999999999
Q ss_pred cCCcCCc--ccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCC-CCEEEcCCCcccccC
Q 003465 281 LTGPIPS--TLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLEN-LERVDMSSNKLEGPI 357 (818)
Q Consensus 281 l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~ 357 (818)
++ .+|. .++.+++|++|++++|.+.|.+| .+..+++|+.|++++|++. .+|..+..+++ |+.|++++|.+. .+
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence 99 7888 89999999999999999998888 8999999999999999999 78888999999 999999999998 77
Q ss_pred CcCcCCCC--CCCEEeccCCcCCCCCCcccC-------CCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCccc
Q 003465 358 PLTIGDLT--NLIYLDLSLNQLSGPIPSTFG-------HLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428 (818)
Q Consensus 358 ~~~l~~l~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 428 (818)
|..+..++ +|+.|++++|.+++.+|..+. .+++|++|++++|.++...+..+..+++|+.|++++|.++ .
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~ 471 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-E 471 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-C
Confidence 88777655 899999999999999998888 8889999999999999544444667899999999999999 5
Q ss_pred CCccc-cCC-------CCCCEEECcCCcCCccCChhhh--cCccccccccccEEECCCCcCcccCCcccccccCCcccCC
Q 003465 429 IPSEI-RNL-------SYLHELDLSLNFISGMTPPQHF--KQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVP 498 (818)
Q Consensus 429 ~p~~l-~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip 498 (818)
+|..+ ... ++|+.|++++|.++ .+|..+. .+. .|+.|++++|++++ +|.
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~------~L~~L~Ls~N~l~~-ip~------------- 530 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP------YLVGIDLSYNSFSK-FPT------------- 530 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT------TCCEEECCSSCCSS-CCC-------------
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC------CcCEEECCCCCCCC-cCh-------------
Confidence 66543 322 39999999999999 5676665 555 89999999999986 665
Q ss_pred hhhcCCcCCCEEEC------CCCcCccCCcccccCCCCCCeeeCcCCCCcccCCcccccCCCCCcccCcCCCC
Q 003465 499 SEIGNCSGLLNVTL------SNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMINFSI 565 (818)
Q Consensus 499 ~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~n~~~~ 565 (818)
.++++++|+.|+| ++|++.+.+|..++.+++|++|++++|++ +.||......+....+.+|+..|
T Consensus 531 -~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 531 -QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp -GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCE
T ss_pred -hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCcc
Confidence 7888999999999 56889999999999999999999999999 89998655677777788887776
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=436.27 Aligned_cols=434 Identities=22% Similarity=0.262 Sum_probs=347.9
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecc-cCcccccCCCCCCCCC----CCCc--EEE---------C-cCCCCC-
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDL-SHNNLTGTIPSKLGNL----NNLV--ELY---------L-SRSNLN- 162 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L-s~n~l~~~~p~~~~~l----~~L~--~L~---------L-s~n~l~- 162 (818)
.+++.|+|+++.+.|.+|+.|++|++|++|+| ++|.+.|..|...... ..++ .+. . ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47899999999999999999999999999999 8898887644221111 0000 000 0 000000
Q ss_pred ----------CCCccccCCCCCCCEEEccC--CCCCCCCccCCCCCCCCcEEEcccCcCCc-----------------cC
Q 003465 163 ----------GPIPSTLGHLTRLSILDLSS--NSLVGPIPFTLGHLTQLTTLKLFSNQING-----------------CI 213 (818)
Q Consensus 163 ----------~~~p~~l~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~ 213 (818)
...+........++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00111112223344444443 67776 77788888888888888888887 48
Q ss_pred Ccccc--CCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC-CCC-CCCccccCC-------CCCcEEEccccccC
Q 003465 214 PLDFG--NLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ-LSG-PLPQEIGYL-------ENLVYLSLNVNNLT 282 (818)
Q Consensus 214 ~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l-------~~L~~L~L~~n~l~ 282 (818)
|..++ ++++|++|+|++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+..+ ++|++|+|++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88887 99999999999999999999999999999999999998 887 677766544 59999999999999
Q ss_pred CcCCc--ccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCC-CCEEEcCCCcccccCCc
Q 003465 283 GPIPS--TLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLEN-LERVDMSSNKLEGPIPL 359 (818)
Q Consensus 283 ~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~ 359 (818)
.+|. .++.+++|+.|+|++|.+. .+| .+..+++|+.|+|++|++. .+|..+..+++ |+.|++++|.+. .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 8888 8999999999999999998 777 8999999999999999999 88988999999 999999999998 7788
Q ss_pred CcCCCCC--CCEEeccCCcCCCCCCccc---C--CCCCCCEEEccCCcCcccCCccc-cCCCCCCEEecccCcCcccCCc
Q 003465 360 TIGDLTN--LIYLDLSLNQLSGPIPSTF---G--HLTLLKFLNLNSNKLNGSIPSEL-MNCFSLQSLILSNNSLTGRIPS 431 (818)
Q Consensus 360 ~l~~l~~--L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~ 431 (818)
.+..++. |+.|++++|.+.+.+|... . .+++|+.|+|++|.++ .+|..+ ..+++|+.|+|++|.++ .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 8777654 9999999999998766432 2 3458999999999999 566654 48899999999999999 6666
Q ss_pred cccC--------CCCCCEEECcCCcCCccCChhhh--cCccccccccccEEECCCCcCcccCCcccccccCCcccCChhh
Q 003465 432 EIRN--------LSYLHELDLSLNFISGMTPPQHF--KQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEI 501 (818)
Q Consensus 432 ~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~ 501 (818)
.+.. +++|+.|+|++|+++ .+|..+. .+. .|+.|++++|++++ +|. .+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~------~L~~L~Ls~N~L~~-lp~--------------~l 772 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP------YLSNMDVSYNCFSS-FPT--------------QP 772 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT------TCCEEECCSSCCSS-CCC--------------GG
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC------CcCEEEeCCCCCCc-cch--------------hh
Confidence 5433 238999999999999 5677665 555 89999999999986 555 78
Q ss_pred cCCcCCCEEECCC------CcCccCCcccccCCCCCCeeeCcCCCCcccCCcccccCCCCCcccCcCCCC
Q 003465 502 GNCSGLLNVTLSN------NSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMINFSI 565 (818)
Q Consensus 502 ~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~n~~~~ 565 (818)
+.+++|+.|+|++ |++.+.+|..++.+++|+.|+|++|++ +.||......+....+.+|+...
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCE
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCc
Confidence 8899999999977 889999999999999999999999999 89999655667777777876544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=411.69 Aligned_cols=411 Identities=22% Similarity=0.219 Sum_probs=263.0
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
++|++|+|++|.+.+..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 78888888888888777778888888888888888888777888888888888888888887 56655 7888888888
Q ss_pred cCCCCCC-CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCC--CEEEccCCcC--CCCCCCCCCCCC-cceEEEccC
Q 003465 181 SSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHL--KEVDLSGNKL--NGPIASTIGDLT-NLNSLDLSS 254 (818)
Q Consensus 181 ~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~L~~ 254 (818)
++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+. ....+++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 8888876 467788888888888888888875 356667777 8888888888 666666666654 233455566
Q ss_pred CCCCCCCCc-cccCCCCCcEEEccccc-------cCCcCCcccCCCCCC---------------------------CEEE
Q 003465 255 KQLSGPLPQ-EIGYLENLVYLSLNVNN-------LTGPIPSTLGRLTSL---------------------------SDLD 299 (818)
Q Consensus 255 n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L---------------------------~~L~ 299 (818)
|.+.+.++. .+..+++|+.|++++|. +.+.+| .+..+++| ++|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 665543332 33445566666666554 333333 34444444 4455
Q ss_pred ccCCcCCCCCchhh-----cCCCCCCeeeccCCcCCCCcC-ccccCC---CCCCEEEcCCCcccccCCcCcCCCCCCCEE
Q 003465 300 LSHNSLFGPIPPTL-----SHLTRLTTLKLFSNQINGSIP-LGIGNL---ENLERVDMSSNKLEGPIPLTIGDLTNLIYL 370 (818)
Q Consensus 300 Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 370 (818)
+++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 55554444444444 4444555555555444 223 122222 34555555555544221 11455666666
Q ss_pred eccCCcCCCCCCcccCCCCCCCEEEccCCcCcc--cCCccccCCCCCCEEecccCcCcccCCcc-ccCCCCCCEEECcCC
Q 003465 371 DLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG--SIPSELMNCFSLQSLILSNNSLTGRIPSE-IRNLSYLHELDLSLN 447 (818)
Q Consensus 371 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N 447 (818)
++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|.+++.+|.. +..+++|+.|++++|
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 666666666666666666666666666666664 34455666666666666666666534443 556666666666666
Q ss_pred cCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCccc-cc
Q 003465 448 FISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE-MG 526 (818)
Q Consensus 448 ~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~ 526 (818)
.+++..|..+. . .|+.|++++|+++ .+| ..+..+++|+.|++++|+++. +|.. +.
T Consensus 410 ~l~~~~~~~l~--~------~L~~L~Ls~N~l~-~ip--------------~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 465 (520)
T 2z7x_B 410 ILTDTIFRCLP--P------RIKVLDLHSNKIK-SIP--------------KQVVKLEALQELNVASNQLKS-VPDGIFD 465 (520)
T ss_dssp CCCGGGGGSCC--T------TCCEEECCSSCCC-CCC--------------GGGGGCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred CCCcchhhhhc--c------cCCEEECCCCccc-ccc--------------hhhhcCCCCCEEECCCCcCCc-cCHHHhc
Confidence 66655443332 1 5666666666665 333 355567777777777777773 4443 67
Q ss_pred CCCCCCeeeCcCCCCcccCC
Q 003465 527 KIIFLEYLDLSYNNIPGTVP 546 (818)
Q Consensus 527 ~l~~L~~L~ls~N~l~g~ip 546 (818)
.+++|++|++++|++++..+
T Consensus 466 ~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCTTCCEEECCSSCBCCCHH
T ss_pred cCCcccEEECcCCCCcccCC
Confidence 77777777777777776655
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=406.65 Aligned_cols=429 Identities=22% Similarity=0.233 Sum_probs=348.1
Q ss_pred CcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccC
Q 003465 103 LESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182 (818)
Q Consensus 103 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (818)
..+.+++++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++
T Consensus 7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 344677777777 5666554 7999999999999988889999999999999999999988889999999999999999
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccCcCCc-cCCccccCCCCCCEEEccCCcCCCCC-CCCCCCCCcceEEEccCCCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSNQING-CIPLDFGNLRHLKEVDLSGNKLNGPI-ASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
|.+++..|..++++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+ +..+.++++|++|++++|.+++.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 99998888779999999999999999986 35678999999999999999854444 46899999999999999999998
Q ss_pred CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCC--c-hhhcCCCCCCeeeccCCcCCCCcC---
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPI--P-PTLSHLTRLTTLKLFSNQINGSIP--- 334 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~--- 334 (818)
.|..+..+++|++|+++.|.+.......+..+++|++|++++|.+.+.. + .....+++|+.|++++|.+.+..+
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 9999999999999999999987433333456899999999999998742 1 223457899999999999876443
Q ss_pred -ccccCCCCCCEEEcCCCcccccCC---------cCc--------------------------CCCCCCCEEeccCCcCC
Q 003465 335 -LGIGNLENLERVDMSSNKLEGPIP---------LTI--------------------------GDLTNLIYLDLSLNQLS 378 (818)
Q Consensus 335 -~~l~~l~~L~~L~Ls~n~l~~~~~---------~~l--------------------------~~l~~L~~L~Ls~n~l~ 378 (818)
..+..+++|+.+++++|.+.+... ..+ ...++|+.|++++|.+.
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence 334667888999998888765211 001 11357888999999887
Q ss_pred CCCCccc-CCCCCCCEEEccCCcCcccCCc---cccCCCCCCEEecccCcCcccCC--ccccCCCCCCEEECcCCcCCcc
Q 003465 379 GPIPSTF-GHLTLLKFLNLNSNKLNGSIPS---ELMNCFSLQSLILSNNSLTGRIP--SEIRNLSYLHELDLSLNFISGM 452 (818)
Q Consensus 379 ~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ 452 (818)
.+|..+ ..+++|++|++++|++++.+|. .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++
T Consensus 324 -~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 401 (549)
T 2z81_A 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP- 401 (549)
T ss_dssp -CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-
T ss_pred -cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-
Confidence 456554 6799999999999999987643 47789999999999999986432 458899999999999999995
Q ss_pred CChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCC
Q 003465 453 TPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLE 532 (818)
Q Consensus 453 ~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 532 (818)
+|..+.... .|+.|++++|.+++ +|. .+| ++|+.||+++|++++.+ +.+++|+
T Consensus 402 lp~~~~~~~------~L~~L~Ls~N~l~~-l~~----------~~~------~~L~~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 402 MPDSCQWPE------KMRFLNLSSTGIRV-VKT----------CIP------QTLEVLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp CCSCCCCCT------TCCEEECTTSCCSC-CCT----------TSC------TTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred CChhhcccc------cccEEECCCCCccc-ccc----------hhc------CCceEEECCCCChhhhc----ccCChhc
Confidence 465555444 89999999999873 222 122 58999999999999864 5789999
Q ss_pred eeeCcCCCCcccCCc-ccccCCCCCcccCcCCC
Q 003465 533 YLDLSYNNIPGTVPE-FINRIMPADLVPMINFS 564 (818)
Q Consensus 533 ~L~ls~N~l~g~ip~-~~~~~~~~~~~~~n~~~ 564 (818)
+|++++|+++ .||. .....+....+.+|...
T Consensus 455 ~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 455 ELYISRNKLK-TLPDASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp EEECCSSCCS-SCCCGGGCTTCCEEECCSSCCC
T ss_pred EEECCCCccC-cCCCcccCccCCEEecCCCccC
Confidence 9999999998 7887 44555666666676443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=407.38 Aligned_cols=426 Identities=20% Similarity=0.204 Sum_probs=317.2
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
++|++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57999999999 5777666 89999999999999887789999999999999999999888999999999999999999
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCc-cCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcc--eEEEccCCCC--C
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQING-CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNL--NSLDLSSKQL--S 258 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~ 258 (818)
.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56665 89999999999999987 478899999999999999999976 356667777 9999999999 7
Q ss_pred CCCCccccCCC-CCcEEEccccccCCcCCc-ccCCCCCCCEEEccCCc-------CCCCCchhhcCCCCCCeeeccCCcC
Q 003465 259 GPLPQEIGYLE-NLVYLSLNVNNLTGPIPS-TLGRLTSLSDLDLSHNS-------LFGPIPPTLSHLTRLTTLKLFSNQI 329 (818)
Q Consensus 259 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l 329 (818)
+..|..+..+. +...+++++|.+.+.++. .+..+++|+.|++++|. +.+.++ .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 77888777665 344678888888776554 56789999999999987 444443 566677777777766665
Q ss_pred CCCcCcccc---CCCCCCEEEcCCCcccccCCcCc-----CCCCCCCEEeccCCcC------------------------
Q 003465 330 NGSIPLGIG---NLENLERVDMSSNKLEGPIPLTI-----GDLTNLIYLDLSLNQL------------------------ 377 (818)
Q Consensus 330 ~~~~~~~l~---~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l------------------------ 377 (818)
.+..+..+. ..++|+.|++++|++.+.+|..+ ..+++|+.+++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 542221110 13466666666666666666655 5555555555555554
Q ss_pred --CCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcc--cCCccccCCCCCCEEECcCCcCCccC
Q 003465 378 --SGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTG--RIPSEIRNLSYLHELDLSLNFISGMT 453 (818)
Q Consensus 378 --~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~ 453 (818)
.... .+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++ .+|..+..+++|+.|++++|.+++.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 3211 11456677777777777776666667777777777777777765 44455667777777777777776644
Q ss_pred Chh-hhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCC
Q 003465 454 PPQ-HFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLE 532 (818)
Q Consensus 454 p~~-~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 532 (818)
|.. +.... .|+.|++++|++++.+|. .+. ++|+.||+++|+++ .+|..+..+++|+
T Consensus 391 ~~~~~~~l~------~L~~L~Ls~N~l~~~~~~--------------~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 391 KKGDCSWTK------SLLSLNMSSNILTDTIFR--------------CLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp GGCSCCCCT------TCCEEECCSSCCCGGGGG--------------SCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred ccchhccCc------cCCEEECcCCCCCcchhh--------------hhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 443 22222 667777777777655443 333 68999999999998 7888888999999
Q ss_pred eeeCcCCCCcccCCccc---ccCCCCCcccCcCCCC
Q 003465 533 YLDLSYNNIPGTVPEFI---NRIMPADLVPMINFSI 565 (818)
Q Consensus 533 ~L~ls~N~l~g~ip~~~---~~~~~~~~~~~n~~~~ 565 (818)
+|++++|+++ .+|... ...+....+.+|+..|
T Consensus 448 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 9999999998 577632 2344455566776655
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=375.63 Aligned_cols=354 Identities=21% Similarity=0.220 Sum_probs=267.1
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCC-CCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEE
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTI-PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 179 (818)
++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 68999999999999988999999999999999999997555 56799999999999999999988899999999999999
Q ss_pred ccCCCCCCCCccC--CCCCCCCcEEEcccCcCCccCCcc-ccCCCCCCEEEccCCcCCCCCCCCCCCC--CcceEEEccC
Q 003465 180 LSSNSLVGPIPFT--LGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNGPIASTIGDL--TNLNSLDLSS 254 (818)
Q Consensus 180 L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~ 254 (818)
+++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|++.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 899999999999999999887776 8899999999999999998888888766 7899999999
Q ss_pred CCCCCCCCccc--------cCCCCCcEEEccccccCCcCCcccCC---CCCCCEEEccCCcCCCCCc----------hhh
Q 003465 255 KQLSGPLPQEI--------GYLENLVYLSLNVNNLTGPIPSTLGR---LTSLSDLDLSHNSLFGPIP----------PTL 313 (818)
Q Consensus 255 n~l~~~~~~~l--------~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~Ls~n~l~~~~~----------~~l 313 (818)
|.+.+..+..+ ..+++|++|++++|.+++..|..+.. .++|+.|++++|...+... ..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 99987554432 35678999999999988777665543 3788999998886553211 111
Q ss_pred c--CCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCC
Q 003465 314 S--HLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391 (818)
Q Consensus 314 ~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 391 (818)
. ..++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 1 12456666666666666556666666666666666666665555566666666666666666665555566666666
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCC
Q 003465 392 KFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454 (818)
Q Consensus 392 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 454 (818)
++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 666666666665556666666666666666666665444445566666666666666665554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=385.15 Aligned_cols=436 Identities=22% Similarity=0.218 Sum_probs=287.7
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
++++|||++|.+++..+.+|.++++|++|+|++|++++..|.+|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 57888888888877777778888888888888888876666678888888888888888876666677888888888888
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCc-cCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCc----ceEEEccCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQING-CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTN----LNSLDLSSKQ 256 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~----L~~L~L~~n~ 256 (818)
+|.+++..+..|+++++|++|++++|.++. ..|..++.+++|++|++++|++++..+..+..+.+ +..++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 888876666667888888888888888765 34666777888888888888777655554433222 2244455444
Q ss_pred CCCCCCccc------------------------cCC--------------------------------------------
Q 003465 257 LSGPLPQEI------------------------GYL-------------------------------------------- 268 (818)
Q Consensus 257 l~~~~~~~l------------------------~~l-------------------------------------------- 268 (818)
++...+..+ ..+
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 432211111 111
Q ss_pred -------------CCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCc
Q 003465 269 -------------ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335 (818)
Q Consensus 269 -------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 335 (818)
.+++.+.+..+.+... ..+.....|+.|++.+|.+....+ ..++.|+.+++..|.+... .
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~ 365 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--F 365 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--C
T ss_pred ccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--c
Confidence 1222222222222211 112333455566666655543322 2344555556555554422 2
Q ss_pred cccCCCCCCEEEcCCCcccc--cCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCC-ccccCC
Q 003465 336 GIGNLENLERVDMSSNKLEG--PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP-SELMNC 412 (818)
Q Consensus 336 ~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l 412 (818)
....+++|+.|++++|.+.. ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.++++.|......+ ..+..+
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccc
Confidence 23457788888888887753 344455567778888888777664 34456677888888888776654443 346677
Q ss_pred CCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCc-cCChhhhcCccccccccccEEECCCCcCcccCCccccccc
Q 003465 413 FSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG-MTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLS 491 (818)
Q Consensus 413 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~ 491 (818)
.+++.++++.|.+.+..+..+..++.|+.|++++|.+.. ..|..+..+. .|+.|++++|++++..|.
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~------~L~~L~Ls~N~L~~l~~~------ 512 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------NLTFLDLSQCQLEQLSPT------ 512 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEECTT------
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc------ccCEEECCCCccCCcChH------
Confidence 788888888888877777777778888888888876443 3444444444 678888888887766554
Q ss_pred CCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCccc---ccCCCCCcccCcCCCC
Q 003465 492 KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI---NRIMPADLVPMINFSI 565 (818)
Q Consensus 492 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~---~~~~~~~~~~~n~~~~ 565 (818)
.|+++++|+.|+|++|+|++..|..++.+++|++|||++|++++..|+.. ...+....+.+|+..|
T Consensus 513 --------~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 513 --------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp --------TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred --------HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 67777888888888888888777788888888888888888887777622 2345556677787777
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=384.55 Aligned_cols=412 Identities=21% Similarity=0.209 Sum_probs=308.8
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
++|++|++++|.+.+..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 78999999999999888889999999999999999999888999999999999999999998 56765 8999999999
Q ss_pred cCCCCCC-CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCC--CEEEccCCcC--CCCCCCCCCCCC-cceEEEccC
Q 003465 181 SSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHL--KEVDLSGNKL--NGPIASTIGDLT-NLNSLDLSS 254 (818)
Q Consensus 181 ~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~L~~ 254 (818)
++|.+++ ..|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..+..+..+. ..-.+++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999986 3467899999999999999999863 45555666 9999999999 777777776654 122446666
Q ss_pred CCCCCCCCc-cccCCCCCcEEEcccccc-----CCcCCcccCCC---------------------------CCCCEEEcc
Q 003465 255 KQLSGPLPQ-EIGYLENLVYLSLNVNNL-----TGPIPSTLGRL---------------------------TSLSDLDLS 301 (818)
Q Consensus 255 n~l~~~~~~-~l~~l~~L~~L~L~~n~l-----~~~~~~~l~~l---------------------------~~L~~L~Ls 301 (818)
|.+.+.++. .+..+++|+.|++++|.. .+. ...+..+ ++|++|+++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 666654433 234456666666666531 100 0112222 366666666
Q ss_pred CCcCCCCCchhh-----cCCCCCCeeeccCCcCCCCcCc-ccc---CCCCCCEEEcCCCcccccCCcCcCCCCCCCEEec
Q 003465 302 HNSLFGPIPPTL-----SHLTRLTTLKLFSNQINGSIPL-GIG---NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDL 372 (818)
Q Consensus 302 ~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~-~l~---~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 372 (818)
+|.+.+.+|..+ ..++.|+.+++..+.+ .+|. .+. ...+|+.|++++|.+.... ....+++|++|++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred ccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 666666666554 4444444444444444 2331 111 1256888888888775322 1267888999999
Q ss_pred cCCcCCCCCCcccCCCCCCCEEEccCCcCcc--cCCccccCCCCCCEEecccCcCcccCCc-cccCCCCCCEEECcCCcC
Q 003465 373 SLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG--SIPSELMNCFSLQSLILSNNSLTGRIPS-EIRNLSYLHELDLSLNFI 449 (818)
Q Consensus 373 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l 449 (818)
++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 9999988888888889999999999999886 3346678889999999999999874554 477888999999999998
Q ss_pred CccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCccc-ccCC
Q 003465 450 SGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE-MGKI 528 (818)
Q Consensus 450 ~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l 528 (818)
++..|..+. . .|+.|++++|+++ .+|. .+..+++|+.|+|++|+++. +|.. +..+
T Consensus 441 ~~~~~~~l~--~------~L~~L~L~~N~l~-~ip~--------------~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l 496 (562)
T 3a79_B 441 TGSVFRCLP--P------KVKVLDLHNNRIM-SIPK--------------DVTHLQALQELNVASNQLKS-VPDGVFDRL 496 (562)
T ss_dssp CGGGGSSCC--T------TCSEEECCSSCCC-CCCT--------------TTTSSCCCSEEECCSSCCCC-CCTTSTTTC
T ss_pred Ccchhhhhc--C------cCCEEECCCCcCc-ccCh--------------hhcCCCCCCEEECCCCCCCC-CCHHHHhcC
Confidence 876654432 2 7889999999887 3443 66688999999999999984 5554 8899
Q ss_pred CCCCeeeCcCCCCcccCCc
Q 003465 529 IFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 529 ~~L~~L~ls~N~l~g~ip~ 547 (818)
++|++|++++|++.+..|.
T Consensus 497 ~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTCCCEECCSCCBCCCHHH
T ss_pred CCCCEEEecCCCcCCCcch
Confidence 9999999999999887765
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=370.30 Aligned_cols=382 Identities=21% Similarity=0.228 Sum_probs=254.4
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCC-ccccCCCCCCCEEEccC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPI-PSTLGHLTRLSILDLSS 182 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~ 182 (818)
+.++.+++.++ .+|. +. ++|++|+|++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|+|++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45677777766 4454 32 68899999999998877888889999999999998887544 56788888999999999
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccCcCCccCCcc--ccCCCCCCEEEccCCcCCCCCCCC-CCCCCcceEEEccCCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD--FGNLRHLKEVDLSGNKLNGPIAST-IGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~ 259 (818)
|.+++..|..++++++|++|++++|.+++..+.. +.++++|++|++++|.+++..|.. +.++++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 8888777888888888888888888888754444 788888888888888888766665 7788888888888888887
Q ss_pred CCCccccCC--CCCcEEEccccccCCcCCccc--------CCCCCCCEEEccCCcCCCCCchhhcCC---CCCCeeeccC
Q 003465 260 PLPQEIGYL--ENLVYLSLNVNNLTGPIPSTL--------GRLTSLSDLDLSHNSLFGPIPPTLSHL---TRLTTLKLFS 326 (818)
Q Consensus 260 ~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l--------~~l~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~ 326 (818)
..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..|..+... ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 777766654 577777887777775443322 244566666666666655555444332 4555555555
Q ss_pred CcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcC--CCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCccc
Q 003465 327 NQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG--DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGS 404 (818)
Q Consensus 327 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 404 (818)
|.+.+... ..+.+.+..+..+. ..++|+.|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 249 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 54432110 11111111111111 123455555555555554455555555555555555555544
Q ss_pred CCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCC
Q 003465 405 IPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP 484 (818)
Q Consensus 405 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p 484 (818)
.|..+..+++|+.|++++|.+++..|..+..+++|+.|++++ |++++..|
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------------------------------N~l~~~~~ 364 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY------------------------------NHIRALGD 364 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS------------------------------SCCCEECT
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC------------------------------CcccccCh
Confidence 444455555555555555555444444444455555555544 44443333
Q ss_pred cccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 485 MTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 485 ~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
. .++.+++|+.|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus 365 ~--------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 365 Q--------------SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp T--------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred h--------------hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 3 677788999999999999987777889999999999999999999985
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=359.43 Aligned_cols=377 Identities=23% Similarity=0.280 Sum_probs=269.6
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCC-------------cEEECcCCCCCCCC
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNL-------------VELYLSRSNLNGPI 165 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~~~ 165 (818)
..++|++|++++|.+ +.+|.+|+++++|++|++++|.+.+.+|..++++.+| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 457899999999999 7899999999999999999999999999999988875 999999999985 4
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCC
Q 003465 166 PSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLT 245 (818)
Q Consensus 166 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 245 (818)
|.. .++|++|++++|.+++ +|.. +++|++|++++|++++. +.. .++|++|++++|++++ +| .+.+++
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 542 3789999999999986 5643 47899999999998852 221 2689999999999986 56 599999
Q ss_pred cceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeecc
Q 003465 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLF 325 (818)
Q Consensus 246 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 325 (818)
+|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .++.+++|++|++++|.+.+ +|.. .++|+.|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 99999999999985 5544 3589999999999996 56 58899999999999999986 3432 3589999999
Q ss_pred CCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccC
Q 003465 326 SNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI 405 (818)
Q Consensus 326 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 405 (818)
+|.+. .+| .++.+++|+.|++++|++.+ +|. .+++|+.|++++|.+++ +|.. .++|+.|++++|.+++.
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l- 292 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL- 292 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-
Confidence 99998 677 48899999999999999985 443 24789999999999986 4443 47899999999999862
Q ss_pred CccccCCCCCCEEecccCcCcccCCccccCC-CCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCC
Q 003465 406 PSELMNCFSLQSLILSNNSLTGRIPSEIRNL-SYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP 484 (818)
Q Consensus 406 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p 484 (818)
|. ..++|+.|++++|.+++ ++ .+ ++|+.|++++|++++. |..+ . .|+.|++++|++++ +|
T Consensus 293 ~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~l-p~~~---~------~L~~L~L~~N~l~~-lp 353 (454)
T 1jl5_A 293 SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIEL-PALP---P------RLERLIASFNHLAE-VP 353 (454)
T ss_dssp SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCC-CCCC---T------TCCEEECCSSCCSC-CC
T ss_pred cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccccc-cccC---C------cCCEEECCCCcccc-cc
Confidence 22 12689999999999985 22 23 5899999999999874 4331 2 78999999998883 33
Q ss_pred cccccccCCcccCChhhcCCcCCCEEECCCCcCcc--CCcccccCC-------------CCCCeeeCcCCCCcc--cCCc
Q 003465 485 MTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDG--TIPLEMGKI-------------IFLEYLDLSYNNIPG--TVPE 547 (818)
Q Consensus 485 ~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l-------------~~L~~L~ls~N~l~g--~ip~ 547 (818)
. .+++|+.|++++|++++ .+|..++.+ ++|++||+++|+++| .+|.
T Consensus 354 ~-----------------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 354 E-----------------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp C-----------------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred c-----------------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 2 35789999999999999 888888887 789999999999988 7775
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=370.63 Aligned_cols=422 Identities=22% Similarity=0.195 Sum_probs=320.0
Q ss_pred cCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCC
Q 003465 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGH 195 (818)
Q Consensus 116 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 195 (818)
.+|..+. +++++|||++|+|++..+.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 3454442 47999999999999877789999999999999999999877888999999999999999999777778999
Q ss_pred CCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCC-CCCCCCCCCCcceEEEccCCCCCCCCCccccCCCC----
Q 003465 196 LTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG-PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLEN---- 270 (818)
Q Consensus 196 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---- 270 (818)
+++|++|++++|++++..+..|+++++|++|++++|.++. ..|..+..+++|++|++++|++++..+..+..+.+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999999998877889999999999999999976 35778889999999999999999887777765443
Q ss_pred CcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCC------------------------------------------
Q 003465 271 LVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGP------------------------------------------ 308 (818)
Q Consensus 271 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~------------------------------------------ 308 (818)
+..++++.|.++...+..+ ....++.+++.+|.....
T Consensus 203 ~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 3467788887764333322 222334444443321100
Q ss_pred ----------------Cc----------------------hhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCC
Q 003465 309 ----------------IP----------------------PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSS 350 (818)
Q Consensus 309 ----------------~~----------------------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 350 (818)
.. ..+.....|+.|++.+|.+....+ ..++.|+.+++..
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTS 358 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEES
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhhhccccc
Confidence 00 011222334444444444432211 1234455555555
Q ss_pred CcccccCCcCcCCCCCCCEEeccCCcCCC--CCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCccc
Q 003465 351 NKLEGPIPLTIGDLTNLIYLDLSLNQLSG--PIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428 (818)
Q Consensus 351 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 428 (818)
|.+.. +.....+++|+.|++++|.+.. ..+..+..+.+|+.|+++.|.... .+..+..+++|+.++++.|.....
T Consensus 359 n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 359 NKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp CCSCC--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEEST
T ss_pred ccCCC--Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccc
Confidence 55432 2234568899999999998863 345566778899999999998874 456688899999999999987655
Q ss_pred CC-ccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCC
Q 003465 429 IP-SEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGL 507 (818)
Q Consensus 429 ~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L 507 (818)
.+ ..+..+++++.++++.|.+.+..+..+.... .++.|++++|.+... .+|..++.+++|
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~------~L~~L~Ls~N~~~~~-------------~~~~~~~~l~~L 496 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS------SLEVLKMAGNSFQEN-------------FLPDIFTELRNL 496 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT------TCCEEECTTCEEGGG-------------EECSCCTTCTTC
T ss_pred ccccccccccccccccccccccccccccccccch------hhhhhhhhhcccccc-------------cCchhhhhcccc
Confidence 44 4578899999999999999998877666665 899999999986543 223478889999
Q ss_pred CEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCCC
Q 003465 508 LNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFSI 565 (818)
Q Consensus 508 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~~ 565 (818)
+.|||++|++++.+|..|+.+++|++|+|++|++++..|. .....+....+.+|....
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 9999999999999999999999999999999999987775 334556666677775444
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=348.89 Aligned_cols=390 Identities=25% Similarity=0.309 Sum_probs=279.2
Q ss_pred CCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcC-------------ceecccCcccccCCCCCCCCCCCCcEEECcC
Q 003465 92 LDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKL-------------QILDLSHNNLTGTIPSKLGNLNNLVELYLSR 158 (818)
Q Consensus 92 l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 158 (818)
+|.. +.++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|.. .++|++|++++
T Consensus 26 iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~ 100 (454)
T 1jl5_A 26 MPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASC 100 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCS
T ss_pred CChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccC
Confidence 3665 9999999999999999999999999999875 999999999985 4542 37899999999
Q ss_pred CCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCC
Q 003465 159 SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIA 238 (818)
Q Consensus 159 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 238 (818)
|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|++++ +| .++++++|++|++++|++++ +|
T Consensus 101 n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp 169 (454)
T 1jl5_A 101 NSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LP 169 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CC
T ss_pred CcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cC
Confidence 99996 6753 4799999999999985 3321 2799999999999996 66 69999999999999999986 45
Q ss_pred CCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCC
Q 003465 239 STIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTR 318 (818)
Q Consensus 239 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 318 (818)
..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|.+. .+| .+..+++
T Consensus 170 ~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~ 238 (454)
T 1jl5_A 170 DLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPF 238 (454)
T ss_dssp CCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTT
T ss_pred CCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCC
Confidence 443 599999999999997 55 68999999999999999995 5543 368999999999998 566 4889999
Q ss_pred CCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccC
Q 003465 319 LTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNS 398 (818)
Q Consensus 319 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 398 (818)
|+.|++++|++.+ +|. .+++|+.|++++|++.+ +|.. +++|+.|++++|.+++. +.. .++|+.|++++
T Consensus 239 L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~ 306 (454)
T 1jl5_A 239 LTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASS 306 (454)
T ss_dssp CCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCS
T ss_pred CCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcC
Confidence 9999999999985 554 24899999999999986 4443 47999999999999863 211 26899999999
Q ss_pred CcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCc
Q 003465 399 NKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNR 478 (818)
Q Consensus 399 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~ 478 (818)
|.+++ ++. ..++|+.|++++|++++ +|.. +++|+.|++++|.+++. |. ... .|+.|++++|+
T Consensus 307 N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~------~L~~L~L~~N~ 368 (454)
T 1jl5_A 307 NEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQ------NLKQLHVEYNP 368 (454)
T ss_dssp SCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCT------TCCEEECCSSC
T ss_pred CcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhh------hccEEECCCCC
Confidence 99985 222 12589999999999996 6654 58999999999999964 44 223 89999999999
Q ss_pred Ccc--cCCccccccc--CCcccCChhhcCCcCCCEEECCCCcCcc--CCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 479 LSG--QIPMTIGGLS--KLSGSVPSEIGNCSGLLNVTLSNNSLDG--TIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 479 l~g--~~p~~~~~~~--~l~g~ip~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
+++ .+|..+..+. .+.|.+|.. +++|+.||+++|++++ .+|.+ ++.|.+++|.+.+.+|.
T Consensus 369 l~~l~~ip~~l~~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 369 LREFPDIPESVEDLRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp CSSCCCCCTTCCEEECCC---------------------------------------------------------
T ss_pred CCcCCCChHHHHhhhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 999 8888877653 366777763 5789999999999998 77764 56677888988887764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=359.25 Aligned_cols=421 Identities=20% Similarity=0.169 Sum_probs=334.1
Q ss_pred ccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCC
Q 003465 66 WAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKL 145 (818)
Q Consensus 66 w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 145 (818)
+.++..+....++.|++.+- .+..+++.+|.++++|++|+|++|.+++..|..|+++++|++|+|++|.++ .+|..
T Consensus 43 L~~ip~~~~~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~- 118 (562)
T 3a79_B 43 LTHVPKDLPPRTKALSLSQN--SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC- 118 (562)
T ss_dssp CCSCCTTSCTTCCEEECCSS--CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-
T ss_pred CccCCCCCCCCcCEEECCCC--CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-
Confidence 33343333356778888431 133345556999999999999999999999999999999999999999999 56766
Q ss_pred CCCCCCcEEECcCCCCCC-CCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCC--cEEEcccCcC--CccCCccccCC
Q 003465 146 GNLNNLVELYLSRSNLNG-PIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL--TTLKLFSNQI--NGCIPLDFGNL 220 (818)
Q Consensus 146 ~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l 220 (818)
.+++|++|++++|++++ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..+
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccccccc
Confidence 89999999999999986 3468999999999999999999864 44555555 9999999999 88888888776
Q ss_pred C--CCCEEEccCCcCCCCCCC-CCCCCCcceEEEccCCCCC----------------------------CC----CCccc
Q 003465 221 R--HLKEVDLSGNKLNGPIAS-TIGDLTNLNSLDLSSKQLS----------------------------GP----LPQEI 265 (818)
Q Consensus 221 ~--~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~----------------------------~~----~~~~l 265 (818)
. .+ .+++++|.+.+.++. .+..+++|+.|++++|... +. ++..
T Consensus 195 ~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~- 272 (562)
T 3a79_B 195 NTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF- 272 (562)
T ss_dssp CEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-
T ss_pred CcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-
Confidence 5 33 567888887764443 4567788888888887411 00 0011
Q ss_pred cCCCCCcEEEccccccCCcCCccc-----CCCCCCCEEEccCCcCCCCCc-hhhc---CCCCCCeeeccCCcCCCCcCcc
Q 003465 266 GYLENLVYLSLNVNNLTGPIPSTL-----GRLTSLSDLDLSHNSLFGPIP-PTLS---HLTRLTTLKLFSNQINGSIPLG 336 (818)
Q Consensus 266 ~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~l~---~l~~L~~L~L~~n~l~~~~~~~ 336 (818)
...++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|+.|++++|.+.... .
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~ 348 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--C 348 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--C
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--C
Confidence 123489999999999998888877 6777777777777776 344 3332 2368999999999986432 1
Q ss_pred ccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCC--CCcccCCCCCCCEEEccCCcCcccCCc-cccCCC
Q 003465 337 IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGP--IPSTFGHLTLLKFLNLNSNKLNGSIPS-ELMNCF 413 (818)
Q Consensus 337 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~ 413 (818)
...+++|+.|++++|.+.+..|..+..+++|+.|++++|++++. +|..+..+++|++|++++|.+++.+|. .+..++
T Consensus 349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 26789999999999999998899999999999999999999974 356789999999999999999985655 478899
Q ss_pred CCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCC
Q 003465 414 SLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKL 493 (818)
Q Consensus 414 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l 493 (818)
+|+.|++++|++++.+|..+. ++|+.|++++|+++. +|..++.+. .|+.|++++|+++ .+|..
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~------~L~~L~L~~N~l~-~l~~~------- 491 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQ------ALQELNVASNQLK-SVPDG------- 491 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSC------CCSEEECCSSCCC-CCCTT-------
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCC------CCCEEECCCCCCC-CCCHH-------
Confidence 999999999999987776554 799999999999984 566666666 8999999999998 45541
Q ss_pred cccCChhhcCCcCCCEEECCCCcCccCCcc
Q 003465 494 SGSVPSEIGNCSGLLNVTLSNNSLDGTIPL 523 (818)
Q Consensus 494 ~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~ 523 (818)
.++.+++|+.|++++|.+++..|.
T Consensus 492 ------~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 492 ------VFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp ------STTTCTTCCCEECCSCCBCCCHHH
T ss_pred ------HHhcCCCCCEEEecCCCcCCCcch
Confidence 278899999999999999987763
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=347.47 Aligned_cols=358 Identities=23% Similarity=0.208 Sum_probs=264.1
Q ss_pred CcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCC
Q 003465 96 NFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175 (818)
Q Consensus 96 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 175 (818)
.+..+++|++|++++|.+.+. | .++.+++|++|+|++|.+++. | ++.+++|++|++++|.+++. + ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 367788888999988888864 4 688888899999998888864 3 78888888999988888864 3 7888888
Q ss_pred CEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCC
Q 003465 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSK 255 (818)
Q Consensus 176 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 255 (818)
++|++++|.+++. + ++.+++|++|++++|++++. .++++++|++|++++|...+.+ .+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 8888888888863 3 78888888888888888863 3778888888888888655444 4777888888888888
Q ss_pred CCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCc
Q 003465 256 QLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335 (818)
Q Consensus 256 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 335 (818)
.+++ +| +..+++|++|++++|.+++. .++.+++|+.|++++|++++ +| +..+++|+.|++++|++++..
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--
Confidence 8886 33 77788888888888888864 37778888888888888876 44 677888888888888887643
Q ss_pred cccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 003465 336 GIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSL 415 (818)
Q Consensus 336 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 415 (818)
++.+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. ..++|
T Consensus 250 -~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L 309 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGI 309 (457)
T ss_dssp -CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred -HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcc
Confidence 456677777777665 34566777777666665 45677788888888877666653 23445
Q ss_pred CEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcc
Q 003465 416 QSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSG 495 (818)
Q Consensus 416 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g 495 (818)
+.|++++| ++|+.|++++|++++. + +..+. .|+.|++++|++++
T Consensus 310 ~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~------~L~~L~l~~N~l~~-------------- 353 (457)
T 3bz5_A 310 TELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNT------KLKSLSCVNAHIQD-------------- 353 (457)
T ss_dssp SCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCT------TCSEEECCSSCCCB--------------
T ss_pred eEechhhc-------------ccCCEEECCCCccccc-c--cccCC------cCcEEECCCCCCCC--------------
Confidence 55544443 5677777777777774 2 34444 67777777777764
Q ss_pred cCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCccc
Q 003465 496 SVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI 549 (818)
Q Consensus 496 ~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 549 (818)
++.|..|++++|.++|. +.+..|..+++++|+++|.||...
T Consensus 354 --------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 --------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp --------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred --------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 12344456777777775 345667888888888888888643
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=342.87 Aligned_cols=346 Identities=30% Similarity=0.418 Sum_probs=269.4
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.++++++|+++++.+.. +| .+..+++|++|+|++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35678888888888764 44 47888899999999998886543 8888899999999998885544 8888899999
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++|.+++..+ +.++++|++|++++|.+.+. + .+.++++|++|+++ |.+.+.. .+.++++|+.|++++|.++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 999988886533 78888999999998888753 3 47888889998886 4444332 3788888889999888887
Q ss_pred CCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcccc
Q 003465 259 GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG 338 (818)
Q Consensus 259 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 338 (818)
+. ..+..+++|++|++++|.+++..| ++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 53 347788888888888888886544 66788888888888888753 457788888888888888876544 77
Q ss_pred CCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003465 339 NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSL 418 (818)
Q Consensus 339 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 418 (818)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 88888888888888876443 7788888888888888886544 6778888888888888887655 6778888888
Q ss_pred ecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcc
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSG 481 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g 481 (818)
++++|++++. ..+.++++|+.|++++|++++..| +..+. .|+.|++++|.+++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT------RITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT------TCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC------CCCEEeccCCcccC
Confidence 8888888754 467788888888888888887765 44444 67777888777776
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=343.81 Aligned_cols=353 Identities=22% Similarity=0.226 Sum_probs=278.2
Q ss_pred CCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEE
Q 003465 75 GSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154 (818)
Q Consensus 75 ~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 154 (818)
.+++.+++.+- .+..++ .+..+++|++|++++|.+++. | ++.+++|++|+|++|.+++. + ++++++|++|
T Consensus 42 ~~L~~L~Ls~n--~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNS--SITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSS--CCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred CCCCEEEccCC--CcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 35677777431 122223 389999999999999999974 4 89999999999999999974 3 8999999999
Q ss_pred ECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCC
Q 003465 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234 (818)
Q Consensus 155 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 234 (818)
++++|++++ +| ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|++++|+++
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 999999996 44 89999999999999999974 3889999999999999665555 5889999999999999998
Q ss_pred CCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhc
Q 003465 235 GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLS 314 (818)
Q Consensus 235 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 314 (818)
+. + +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+.+.. +.
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~ 251 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VS 251 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CT
T ss_pred ee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HH
Confidence 74 3 88899999999999999975 48889999999999999997 55 889999999999999998764 45
Q ss_pred CCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEE
Q 003465 315 HLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFL 394 (818)
Q Consensus 315 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 394 (818)
.+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ..++|+.|
T Consensus 252 ~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L 312 (457)
T 3bz5_A 252 TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITEL 312 (457)
T ss_dssp TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCC
T ss_pred HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEe
Confidence 6788888888765 35567788887776665 46778888888888887766663 33455555
Q ss_pred EccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEEC
Q 003465 395 NLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNH 474 (818)
Q Consensus 395 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~l 474 (818)
++++| ++|+.|++++|++++. + +.++++|+.|++++|++++. + .|..+++
T Consensus 313 ~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-~-------------~L~~L~l 362 (457)
T 3bz5_A 313 DLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-S-------------SVGKIPA 362 (457)
T ss_dssp CCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-T-------------TGGGSSG
T ss_pred chhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc-c-------------ccccccc
Confidence 55443 5777888888888763 2 67778888888888887763 1 3445566
Q ss_pred CCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccc
Q 003465 475 QFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEM 525 (818)
Q Consensus 475 s~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 525 (818)
+.|.++|. +.+..|..+++++|+++|.+|..+
T Consensus 363 ~~n~l~g~-------------------~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 363 LNNNFEAE-------------------GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp GGTSEEEE-------------------EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cCCcEEec-------------------ceeeecCccccccCcEEEEcChhH
Confidence 77777654 234456667788888888877654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=340.09 Aligned_cols=347 Identities=29% Similarity=0.400 Sum_probs=212.2
Q ss_pred cCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcE
Q 003465 122 GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT 201 (818)
Q Consensus 122 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 201 (818)
..+++|+.|+++++.+.. +| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346778888888888773 44 377788888888888888754 33 7788888888888888775544 777888888
Q ss_pred EEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEcccccc
Q 003465 202 LKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNL 281 (818)
Q Consensus 202 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 281 (818)
|++++|.+++..+ +.++++|++|++++|.+.+. ..+..+++|+.|+++ |.+.+. ..+..+++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcC
Confidence 8888887775432 77777777777777777642 236666777777765 333322 1255666666666666665
Q ss_pred CCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCc
Q 003465 282 TGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTI 361 (818)
Q Consensus 282 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 361 (818)
++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+. ..+..+++|+.|++++|.+.+..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 532 224555666666666665554433 44555555555555555432 234445555555555555543322 4
Q ss_pred CCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCE
Q 003465 362 GDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHE 441 (818)
Q Consensus 362 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 441 (818)
..+++|+.|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--------------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--------------------------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred hcCCCCCEEECCCCccCcccc--------------------------ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 444455555555554443322 4444455555555555443222 444555555
Q ss_pred EECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCC
Q 003465 442 LDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTI 521 (818)
Q Consensus 442 L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~ 521 (818)
|++++|++++..| +..+. .|+.|++++|.+++. ..++.+++|+.|++++|++++.+
T Consensus 314 L~L~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~----------------~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLT------KLQRLFFYNNKVSDV----------------SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp EECCSSCCSCCGG--GGGCT------TCCEEECCSSCCCCC----------------GGGTTCTTCCEEECCSSCCCBCG
T ss_pred EECcCCcCCCchh--hccCc------cCCEeECCCCccCCc----------------hhhccCCCCCEEeCCCCccCccc
Confidence 5555555554433 22222 455555555555432 14667888999999999999888
Q ss_pred cccccCCCCCCeeeCcCCCCcc
Q 003465 522 PLEMGKIIFLEYLDLSYNNIPG 543 (818)
Q Consensus 522 p~~l~~l~~L~~L~ls~N~l~g 543 (818)
| +..+++|+.|++++|++++
T Consensus 370 ~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 370 P--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp G--GTTCTTCCEEECCCEEEEC
T ss_pred h--hhcCCCCCEEeccCCcccC
Confidence 7 8889999999999999887
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=331.06 Aligned_cols=290 Identities=30% Similarity=0.504 Sum_probs=189.9
Q ss_pred CCCHHHHHHHHcCCC-----CCCCCCCCCCCCCCCC--ccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEE
Q 003465 35 VPIRLEREALLNTGW-----WNNSREKASNHSDHCK--WAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFR 107 (818)
Q Consensus 35 ~~~~~~~~~ll~~~~-----~~~~~~~~~~~~~~c~--w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~ 107 (818)
.|.+.|++||++++. ..+++|. .+.|||. |.||.|+..+ ...++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~--~~~~~C~~~w~gv~C~~~~-----------------------~~~~l~~L~ 56 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWL--PTTDCCNRTWLGVLCDTDT-----------------------QTYRVNNLD 56 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCC--TTSCTTTTCSTTEEECCSS-----------------------SCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCC--CCCCCCcCCCcceEeCCCC-----------------------CCceEEEEE
Confidence 488899999997532 1346785 3678998 9999997431 011355666
Q ss_pred cCCCCCcc--cCCccccCCCcCceecccC-cccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCC
Q 003465 108 IWYSNISG--NIPSEIGALSKLQILDLSH-NNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNS 184 (818)
Q Consensus 108 L~~n~~~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 184 (818)
|++|.+.+ .+|..|+++++|++|+|++ |.+.+.+|..|+++++|++|++++|.+++.+|..|.++++|++|++++|.
T Consensus 57 L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc
Confidence 67777777 7777888888888888884 77777778778888888888888888877777778888888888888887
Q ss_pred CCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCC-CCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCc
Q 003465 185 LVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLR-HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQ 263 (818)
Q Consensus 185 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 263 (818)
+++.+|..+..+++|++|++++|++++.+|..+.+++ +|++|++++|++++..|..+..++ |+.|++++|.+++..|.
T Consensus 137 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215 (313)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG
T ss_pred cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH
Confidence 7777777777777777777777777777777777776 677777777776666666665554 66666666666555555
Q ss_pred cccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCC
Q 003465 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENL 343 (818)
Q Consensus 264 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 343 (818)
.+..+++|++|++++|.+++.+|. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|.. ..+++|
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L 293 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGS
T ss_pred HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccccc
Confidence 555555555555555555544333 444455555555555554444444444444444444444444444432 334444
Q ss_pred CEEEcCCCc
Q 003465 344 ERVDMSSNK 352 (818)
Q Consensus 344 ~~L~Ls~n~ 352 (818)
+.+++++|+
T Consensus 294 ~~l~l~~N~ 302 (313)
T 1ogq_A 294 DVSAYANNK 302 (313)
T ss_dssp CGGGTCSSS
T ss_pred ChHHhcCCC
Confidence 444444443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=337.51 Aligned_cols=301 Identities=22% Similarity=0.229 Sum_probs=159.3
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 35677777777776666666677777777777777766666666666777777777776666544445666666666666
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
++|.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 66666655555666666666666666666655555566666666666666655544444455555555555555555544
Q ss_pred CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCC
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL 340 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 340 (818)
.+..+..+++|++|++++|...+.+|.......+|+.|++++|.+.+..+..+..++
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~----------------------- 248 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV----------------------- 248 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-----------------------
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-----------------------
Confidence 444444445555555554444433333333333444444444444432223333344
Q ss_pred CCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003465 341 ENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLIL 420 (818)
Q Consensus 341 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 420 (818)
+|+.|++++|.+.+..+..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|++
T Consensus 249 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 249 -YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp -TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred -ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 4444444444443333333344444444444444444333344444444444444444444333333344444444444
Q ss_pred ccCcC
Q 003465 421 SNNSL 425 (818)
Q Consensus 421 s~N~l 425 (818)
++|++
T Consensus 328 ~~N~l 332 (477)
T 2id5_A 328 DSNPL 332 (477)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 44443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.82 Aligned_cols=324 Identities=22% Similarity=0.216 Sum_probs=237.6
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46677766665 4555443 47778888888777766777777777888888777777666777777777777777777
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCc
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQ 263 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 263 (818)
.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 77755555567777777777777777766666666777777777777666655555666666666666666665544444
Q ss_pred cccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCC
Q 003465 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENL 343 (818)
Q Consensus 264 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 343 (818)
.+..+++|+.|++++|.+. +..+..+..+++|+.|++++|.+.+.+|.......+|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNIN------------------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp HHTTCTTCCEEEEESCCCC------------------------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred HhcccCCCcEEeCCCCcCc------------------------EeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 4445555555555555444 4444445555555556665555555555555555688
Q ss_pred CEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccC
Q 003465 344 ERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423 (818)
Q Consensus 344 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 423 (818)
+.|++++|.+....+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 88888888888655567889999999999999999888888999999999999999999988999999999999999999
Q ss_pred cCcccCCccccCCCCCCEEECcCCcCCccCC
Q 003465 424 SLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454 (818)
Q Consensus 424 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 454 (818)
.+++..+..+..+++|+.|++++|++....+
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 9997777788999999999999999986544
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=317.46 Aligned_cols=312 Identities=19% Similarity=0.182 Sum_probs=212.9
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.++++++|+++++.+....+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46788999999988886655667889999999999999987777788999999999999999988778888889999999
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++|.++...+..+.++++|++|++++|.+++..+..+.++++|++|++++|++++. .+..+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999988855545568888889999888888877777788888888888888887753 3455677777777777665
Q ss_pred CCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcccc
Q 003465 259 GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG 338 (818)
Q Consensus 259 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 338 (818)
+ +...++|++|++++|.++.. |. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 2 33345667777777766633 22 1235566666666655532 3444555555555555555544444444
Q ss_pred CCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003465 339 NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSL 418 (818)
Q Consensus 339 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 418 (818)
.+++|+.|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|+.|
T Consensus 270 ------------------------~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 270 ------------------------KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp ------------------------TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred ------------------------ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 44455555555554443 2333445556666666666665 344445556666666
Q ss_pred ecccCcCcccCCccccCCCCCCEEECcCCcCCcc
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGM 452 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 452 (818)
++++|+++.. + +..+++|+.|++++|++...
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 6666666532 2 45566777777777776654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=334.28 Aligned_cols=313 Identities=20% Similarity=0.198 Sum_probs=221.5
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.+++++.|++++|.+....+..|+++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788999999988887666678889999999999999988777788999999999999999988777788889999999
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++. .+..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 9999988866555678888888888888888887777888888888888888887753 2455667777777777665
Q ss_pred CCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcccc
Q 003465 259 GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG 338 (818)
Q Consensus 259 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 338 (818)
+ +....+|++|++++|.++...+ .+ .++|+.|++++|.+.+. . .+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~------------------------~l~ 251 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--A------------------------WLL 251 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--G------------------------GGG
T ss_pred c-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--h------------------------hhc
Confidence 3 3344566666666666653221 11 23455555555555431 3 344
Q ss_pred CCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003465 339 NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSL 418 (818)
Q Consensus 339 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 418 (818)
.+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 45555555555555555555555555555556665555554 3444555667777777777776 456666677777778
Q ss_pred ecccCcCcccCCccccCCCCCCEEECcCCcCCccC
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT 453 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 453 (818)
+|++|.+++. + +..+++|+.|++++|++.+..
T Consensus 330 ~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 330 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 8887777643 2 556778888888888887653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=310.09 Aligned_cols=332 Identities=21% Similarity=0.172 Sum_probs=217.9
Q ss_pred CCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEE
Q 003465 148 LNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVD 227 (818)
Q Consensus 148 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 227 (818)
+.+|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|+++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57889999999988854444578888999999999988876667788888888888888888877777778888888888
Q ss_pred ccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCC
Q 003465 228 LSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG 307 (818)
Q Consensus 228 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 307 (818)
+++|+++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 888877755444566777777777777777665555566666666666666666532 12334455555555554431
Q ss_pred CCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCC
Q 003465 308 PIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGH 387 (818)
Q Consensus 308 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 387 (818)
+. ..++|+.|++++|.+... +. ...++|+.|++++|.+++. ..+..
T Consensus 201 -----~~------------------------~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 201 -----LA------------------------IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp -----EE------------------------CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred -----cC------------------------CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcC
Confidence 12 223455555555554432 11 1234566666666666543 34566
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccc
Q 003465 388 LTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDR 467 (818)
Q Consensus 388 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 467 (818)
+++|++|++++|.+++..|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|++++. |
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~------------- 311 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-E------------- 311 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-G-------------
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-C-------------
Confidence 6667777777777766666666667777777777777663 344455666677777666665532 1
Q ss_pred cccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 468 LLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 468 ~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
..++.+++|+.|++++|+++.. | +..+++|++|++++|++.+.-..
T Consensus 312 -------------------------------~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 312 -------------------------------RNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp -------------------------------GGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred -------------------------------ccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH
Confidence 2345566777777777777654 2 56677888888888888775444
Q ss_pred ccccCCCCCcccCcCCCC
Q 003465 548 FINRIMPADLVPMINFSI 565 (818)
Q Consensus 548 ~~~~~~~~~~~~~n~~~~ 565 (818)
..+.......+.++...|
T Consensus 358 ~~~~~~~~~~~~~~~~~c 375 (390)
T 3o6n_A 358 ALFRNVARPAVDDADQHC 375 (390)
T ss_dssp HHTTTCCTTTBCCCCSCC
T ss_pred HHHHHHHhhcccccCcee
Confidence 445555555566676666
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=301.58 Aligned_cols=307 Identities=29% Similarity=0.409 Sum_probs=171.7
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 176 (818)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 3445555555555555543 22 255555555555555555532 22 5555555555555555542 22 355555555
Q ss_pred EEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC
Q 003465 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256 (818)
Q Consensus 177 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 256 (818)
+|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-------------------------~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-------------------------PLSNMTGLNYLTVTESK 166 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-------------------------GGTTCTTCCEEECCSSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-------------------------chhhCCCCcEEEecCCC
Confidence 55555555543221 4444555555555443332222 24444444445554444
Q ss_pred CCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcc
Q 003465 257 LSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLG 336 (818)
Q Consensus 257 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 336 (818)
+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 443221 4445555555555555553222 4555666666666666554332 5556666666666666654332
Q ss_pred ccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 003465 337 IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416 (818)
Q Consensus 337 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 416 (818)
+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 55666666677666666542 3466667777777777776653 3466677777777777777766667777777777
Q ss_pred EEecccCcCcccCCccccCCCCCCEEECcCCcCC
Q 003465 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450 (818)
Q Consensus 417 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 450 (818)
.|++++|++++..| +..+++|+.|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777775544 667777777777777764
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=326.65 Aligned_cols=332 Identities=21% Similarity=0.168 Sum_probs=223.8
Q ss_pred CCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEE
Q 003465 148 LNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVD 227 (818)
Q Consensus 148 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 227 (818)
+.+++.|++++|.+....+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56788999999988865555678888899999998888877777888888888888888888877777778888888888
Q ss_pred ccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCC
Q 003465 228 LSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG 307 (818)
Q Consensus 228 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 307 (818)
+++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 8888777655555677777777777777776666666666666666666666665431 2334455555555554432
Q ss_pred CCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCC
Q 003465 308 PIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGH 387 (818)
Q Consensus 308 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 387 (818)
+... ++|+.|++++|.+....+. ..++|+.|++++|.+++. ..+..
T Consensus 207 -----l~~~------------------------~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~ 252 (597)
T 3oja_B 207 -----LAIP------------------------IAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLN 252 (597)
T ss_dssp -----EECC------------------------TTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGG
T ss_pred -----ccCC------------------------chhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhcc
Confidence 1222 3455555555554422111 124566666666666542 45566
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccc
Q 003465 388 LTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDR 467 (818)
Q Consensus 388 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 467 (818)
+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++.
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i--------------- 316 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV--------------- 316 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC---------------
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc---------------
Confidence 6677777777777766666666677777777777777664 444555566666666666665422
Q ss_pred cccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 468 LLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 468 ~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
|..++.+++|+.|+|++|++++.. ++.+++|++|++++|++++..+.
T Consensus 317 ------------------------------~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 317 ------------------------------ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp ------------------------------GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred ------------------------------CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH
Confidence 224556777888888888887652 66778888999999998887655
Q ss_pred ccccCCCCCcccCcCCCC
Q 003465 548 FINRIMPADLVPMINFSI 565 (818)
Q Consensus 548 ~~~~~~~~~~~~~n~~~~ 565 (818)
..+..+....+.++...|
T Consensus 364 ~~~~~~~~~~~~~~~~~C 381 (597)
T 3oja_B 364 ALFRNVARPAVDDADQHC 381 (597)
T ss_dssp HHTTTCCTTTBCCCCCCC
T ss_pred HHHHHHhhhccccccccC
Confidence 556666666777888888
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-33 Score=299.97 Aligned_cols=302 Identities=27% Similarity=0.379 Sum_probs=207.3
Q ss_pred CEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEE
Q 003465 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155 (818)
Q Consensus 76 ~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 155 (818)
.++.+++.+. .+..++ .+..+++|++|++++|.+.+..+ +..+++|++|+|++|.+++ ++ .+.++++|++|+
T Consensus 45 ~L~~L~l~~~--~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 45 SITKLVVAGE--KVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELY 116 (347)
T ss_dssp TCSEEECCSS--CCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred cccEEEEeCC--ccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEE
Confidence 4666776432 122223 27889999999999999986443 9999999999999999985 44 699999999999
Q ss_pred CcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCC
Q 003465 156 LSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG 235 (818)
Q Consensus 156 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 235 (818)
+++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 999999854 44 8999999999999997665554 48999999999999999886543 7788889999998888875
Q ss_pred CCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcC
Q 003465 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSH 315 (818)
Q Consensus 236 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 315 (818)
..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. +.+..
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 433 6677777777777777765432 5566667777777766664322 55566666666666655532 23444
Q ss_pred CCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEE
Q 003465 316 LTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLN 395 (818)
Q Consensus 316 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 395 (818)
+++|+.|++++|+++ +. ..+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~------------------------~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 264 LTKLKMLNVGSNQIS------------------------DI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp CTTCCEEECCSSCCC------------------------CC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred CCCcCEEEccCCccC------------------------CC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 455555555555444 32 2344555555555655555555555555666666666
Q ss_pred ccCCcCcccCCccccCCCCCCEEecccCcCc
Q 003465 396 LNSNKLNGSIPSELMNCFSLQSLILSNNSLT 426 (818)
Q Consensus 396 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 426 (818)
+++|++++..| +..+++|+.|++++|.++
T Consensus 318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccccccC--hhhhhccceeehhhhccc
Confidence 66666654444 555666666666666654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-31 Score=283.02 Aligned_cols=295 Identities=22% Similarity=0.286 Sum_probs=158.5
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
++++++++++.+. .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4455555555544 2343332 456666666666665555556666666666666666665556666666666666666
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCC--CCCCCCCCCCcceEEEccCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG--PIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
+|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 66665 3343332 566666666666665555556666666666666666542 344455555666666666665553
Q ss_pred CCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccC
Q 003465 260 PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGN 339 (818)
Q Consensus 260 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 339 (818)
+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++. .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 333222 45555555555555554555555555555555555555444444555555555555555554 44444555
Q ss_pred CCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcc--cCCccccCCCCCCE
Q 003465 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG--SIPSELMNCFSLQS 417 (818)
Q Consensus 340 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~ 417 (818)
+++|+.|++++|++++..+..+.... .....+.|+.|++++|.+.. ..|..|..+.+++.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred CCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeE
Confidence 55555555555555443333332110 00112456666666666542 34455666666666
Q ss_pred EecccCc
Q 003465 418 LILSNNS 424 (818)
Q Consensus 418 L~Ls~N~ 424 (818)
++|++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 6666663
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-31 Score=284.24 Aligned_cols=294 Identities=23% Similarity=0.311 Sum_probs=164.9
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
+++.++++++.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666655 4454442 567777777777765556667777777777777777766666667777777777777
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCC--CCCCCCCCCCcceEEEccCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG--PIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
+|.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++. ..+..+..+ +|+.|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 77666 3444333 566677777666665555556666666666666666642 444455555 56666666666553
Q ss_pred CCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccC
Q 003465 260 PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGN 339 (818)
Q Consensus 260 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 339 (818)
+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 333322 45555555555555544455555555555555555555544445555555555555555554 44444555
Q ss_pred CCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCc--ccCCccccCCCCCCE
Q 003465 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN--GSIPSELMNCFSLQS 417 (818)
Q Consensus 340 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~ 417 (818)
+++|+.|++++|++++..+..+.... .....++|+.|++++|.+. +..|..+..+++|+.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVG------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSS------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred CccCCEEECCCCCCCccChhHccccc------------------cccccccccceEeecCcccccccCcccccccchhhh
Confidence 55555555555555443333332210 0001245566666666655 444555666666666
Q ss_pred EecccCc
Q 003465 418 LILSNNS 424 (818)
Q Consensus 418 L~Ls~N~ 424 (818)
|++++|+
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 6666653
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-31 Score=283.71 Aligned_cols=289 Identities=21% Similarity=0.277 Sum_probs=179.3
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.++++++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 36777888877776 5565553 56777777777777655666777777777777777777666666777777777777
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC--CCCccccCCCCCcEEEccccccC
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG--PLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++|.++ .+|..+. ++|++|++++|++....+..+..+++|+.|++++|.++. ..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 777766 3343333 566666666666655444445555566666666555532 333344444 4555555555444
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG 362 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 362 (818)
+ +|..+ . ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 186 ~-l~~~~------------------------~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 186 G-IPKDL------------------------P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp S-CCSSS------------------------C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred c-cCccc------------------------c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 2 22222 1 4555555555555554445555555566666666655555555555
Q ss_pred CCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccC------CCCCCEEecccCcCc--ccCCcccc
Q 003465 363 DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMN------CFSLQSLILSNNSLT--GRIPSEIR 434 (818)
Q Consensus 363 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~p~~l~ 434 (818)
.+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+.. ..+|+.|++++|++. +..|..+.
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 6666666666666665 45555666666666777766666554444433 467999999999987 56778899
Q ss_pred CCCCCCEEECcCCc
Q 003465 435 NLSYLHELDLSLNF 448 (818)
Q Consensus 435 ~l~~L~~L~Ls~N~ 448 (818)
.+++|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 99999999999985
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-32 Score=289.21 Aligned_cols=250 Identities=30% Similarity=0.461 Sum_probs=128.9
Q ss_pred CCcEEEccccccCC--cCCcccCCCCCCCEEEccC-CcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEE
Q 003465 270 NLVYLSLNVNNLTG--PIPSTLGRLTSLSDLDLSH-NSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERV 346 (818)
Q Consensus 270 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 346 (818)
+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444444 3444444444444444442 44444444444455555555555555544445455555555555
Q ss_pred EcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCC-CCCEEEccCCcCcccCCccccCCCCCCEEecccCcC
Q 003465 347 DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLT-LLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSL 425 (818)
Q Consensus 347 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 425 (818)
++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..+. |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 5555555555555555555555555555555555555555554 556666666665555555555554 66666666666
Q ss_pred cccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCc
Q 003465 426 TGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCS 505 (818)
Q Consensus 426 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~ 505 (818)
++..|..+..+++|+.|++++|.+++..|. +..++
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------------------------------~~~l~ 244 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK---------------------------------------------VGLSK 244 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG---------------------------------------------CCCCT
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc---------------------------------------------ccccC
Confidence 655555566666666666666655543321 22334
Q ss_pred CCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc-ccccCCCCCcccCcCCCC
Q 003465 506 GLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE-FINRIMPADLVPMINFSI 565 (818)
Q Consensus 506 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~~~~~~~~n~~~~ 565 (818)
+|+.|++++|++++.+|..++.+++|++|++++|+++|.+|. .....+....+.+|+.+|
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 445555555555555555555555555555555555555554 333344444445555555
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=280.62 Aligned_cols=290 Identities=21% Similarity=0.269 Sum_probs=184.4
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36788888888877 4565543 57788888888887666667777888888888888777766777777777777777
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC--CCCccccCCCCCcEEEccccccC
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG--PLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 777776 3444333 566666666666665544455556666666666665542 33444444555555555555544
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG 362 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 362 (818)
. +|..+ . ++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 185 ~-l~~~~------------------------~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 185 T-IPQGL------------------------P--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp S-CCSSC------------------------C--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred c-CCccc------------------------c--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 2 22222 1 4555555555555554455555556666666666666555555556
Q ss_pred CCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccC------CCCCCEEecccCcCcc--cCCcccc
Q 003465 363 DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMN------CFSLQSLILSNNSLTG--RIPSEIR 434 (818)
Q Consensus 363 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~ 434 (818)
.+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|++.. ..|..+.
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 6666666666666665 45555666666666666666666554444432 4789999999999864 5567888
Q ss_pred CCCCCCEEECcCCc
Q 003465 435 NLSYLHELDLSLNF 448 (818)
Q Consensus 435 ~l~~L~~L~Ls~N~ 448 (818)
.++.++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 89999999999985
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-35 Score=330.12 Aligned_cols=350 Identities=21% Similarity=0.210 Sum_probs=177.4
Q ss_pred CCCcEEEcCCCCCcccCCc-cccCCCcCceecccCccccc----CCCCCCCCCCCCcEEECcCCCCCCCCcccc-CCCC-
Q 003465 101 PNLESFRIWYSNISGNIPS-EIGALSKLQILDLSHNNLTG----TIPSKLGNLNNLVELYLSRSNLNGPIPSTL-GHLT- 173 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~- 173 (818)
++|++|+|++|.++..... .+..+++|++|+|++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4577888888877654333 36777888888888887764 245556677788888888877764333222 2333
Q ss_pred ---CCCEEEccCCCCCC----CCccCCCCCCCCcEEEcccCcCCccCCccc-----cCCCCCCEEEccCCcCCCCC----
Q 003465 174 ---RLSILDLSSNSLVG----PIPFTLGHLTQLTTLKLFSNQINGCIPLDF-----GNLRHLKEVDLSGNKLNGPI---- 237 (818)
Q Consensus 174 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~---- 237 (818)
+|++|+|++|.++. .++..+..+++|++|++++|.++...+..+ ...++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777763 346667777777777777777654322222 22445666666666665422
Q ss_pred CCCCCCCCcceEEEccCCCCCCCCCcccc-----CCCCCcEEEccccccCCc----CCcccCCCCCCCEEEccCCcCCCC
Q 003465 238 ASTIGDLTNLNSLDLSSKQLSGPLPQEIG-----YLENLVYLSLNVNNLTGP----IPSTLGRLTSLSDLDLSHNSLFGP 308 (818)
Q Consensus 238 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~ 308 (818)
+..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 33344455666666666655432222221 134555555555555532 233444455555555555554322
Q ss_pred C-----chhhcCCCCCCeeeccCCcCCCC----cCccccCCCCCCEEEcCCCcccccCCcCcC-----CCCCCCEEeccC
Q 003465 309 I-----PPTLSHLTRLTTLKLFSNQINGS----IPLGIGNLENLERVDMSSNKLEGPIPLTIG-----DLTNLIYLDLSL 374 (818)
Q Consensus 309 ~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~Ls~ 374 (818)
. +..+..+++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 11112345555555555554432 333344445555555555544322221111 113444444444
Q ss_pred CcCCCC----CCcccCCCCCCCEEEccCCcCcccCCccccC-----CCCCCEEecccCcCcc----cCCccccCCCCCCE
Q 003465 375 NQLSGP----IPSTFGHLTLLKFLNLNSNKLNGSIPSELMN-----CFSLQSLILSNNSLTG----RIPSEIRNLSYLHE 441 (818)
Q Consensus 375 n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~ 441 (818)
|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++ .+|..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 444432 2223333444444444444444322222211 3344444444444443 33333444444444
Q ss_pred EECcCCcCC
Q 003465 442 LDLSLNFIS 450 (818)
Q Consensus 442 L~Ls~N~l~ 450 (818)
|++++|+++
T Consensus 403 L~l~~N~i~ 411 (461)
T 1z7x_W 403 LDLSNNCLG 411 (461)
T ss_dssp EECCSSSCC
T ss_pred EECCCCCCC
Confidence 444444443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-34 Score=325.24 Aligned_cols=388 Identities=21% Similarity=0.159 Sum_probs=199.4
Q ss_pred CcCceecccCcccccCCCCC-CCCCCCCcEEECcCCCCCC----CCccccCCCCCCCEEEccCCCCCCCCccCC-CCCC-
Q 003465 125 SKLQILDLSHNNLTGTIPSK-LGNLNNLVELYLSRSNLNG----PIPSTLGHLTRLSILDLSSNSLVGPIPFTL-GHLT- 197 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~- 197 (818)
++|++|+|++|+++...... +..+++|++|++++|.+++ .++..+..+++|++|+|++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56788888888776443222 5667788888888887763 235566677778888888777664322222 1233
Q ss_pred ---CCcEEEcccCcCCc----cCCccccCCCCCCEEEccCCcCCCCCCCC-----CCCCCcceEEEccCCCCCCCC----
Q 003465 198 ---QLTTLKLFSNQING----CIPLDFGNLRHLKEVDLSGNKLNGPIAST-----IGDLTNLNSLDLSSKQLSGPL---- 261 (818)
Q Consensus 198 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-----l~~l~~L~~L~L~~n~l~~~~---- 261 (818)
+|++|++++|.++. .++..+.++++|++|++++|.+++..+.. ....++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777663 34556666667777777766654322211 112344555555555554321
Q ss_pred CccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhh-cCCCCCCeeeccCCcCCCC----cCcc
Q 003465 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTL-SHLTRLTTLKLFSNQINGS----IPLG 336 (818)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~----~~~~ 336 (818)
+..+..+++|++|++++|.+++..+..+.. .+ ...++|++|++++|.+++. ++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHH--------------------HHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 222333444555555544443322211111 00 0133455555555544432 2333
Q ss_pred ccCCCCCCEEEcCCCcccccC-----CcCcCCCCCCCEEeccCCcCCCC----CCcccCCCCCCCEEEccCCcCcccCCc
Q 003465 337 IGNLENLERVDMSSNKLEGPI-----PLTIGDLTNLIYLDLSLNQLSGP----IPSTFGHLTLLKFLNLNSNKLNGSIPS 407 (818)
Q Consensus 337 l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~ 407 (818)
+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 444455555555555544321 11122345555666665555532 344444556666666666665433222
Q ss_pred ccc-----CCCCCCEEecccCcCccc----CCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCc
Q 003465 408 ELM-----NCFSLQSLILSNNSLTGR----IPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNR 478 (818)
Q Consensus 408 ~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~ 478 (818)
.+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+...... ....|+.|++++|.
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ-PGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS-TTCCCCEEECTTSC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC-CCCceEEEECCCCC
Confidence 221 124666666666666543 34445556666666666666655443333221000 01155666666665
Q ss_pred CcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCccccc-----CCCCCCeeeCcCCCCcc
Q 003465 479 LSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMG-----KIIFLEYLDLSYNNIPG 543 (818)
Q Consensus 479 l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~g 543 (818)
+++... ..+|..+..+++|+.||+++|++++.....+. ....|+.|++.++.+..
T Consensus 382 i~~~~~----------~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 382 VSDSSC----------SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCHHHH----------HHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CChhhH----------HHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 553100 02233566677777777777777654222221 12345666665555543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=280.85 Aligned_cols=282 Identities=21% Similarity=0.241 Sum_probs=180.7
Q ss_pred CCCHHHHHHHHcCCC-------CCCCCCC--CCCCCCCCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcE
Q 003465 35 VPIRLEREALLNTGW-------WNNSREK--ASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLES 105 (818)
Q Consensus 35 ~~~~~~~~~ll~~~~-------~~~~~~~--~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~ 105 (818)
.++..|++||+.++. ....+|. .....++|.|.|+.|+.... .+ .....+++++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~-----------~l------~~~~~~~l~~ 85 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD-----------LL------EDATQPGRVA 85 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHH-----------HH------HHHTSTTCCE
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHH-----------HH------hcccccceeE
Confidence 456679999987542 1124552 01356889999999952110 00 0123467889
Q ss_pred EEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCC
Q 003465 106 FRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL 185 (818)
Q Consensus 106 L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 185 (818)
|+|++|.+. .+|..++++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|++++|.+
T Consensus 86 L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 86 LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp EEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred EEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence 999999988 77888888999999999999998 78888999999999999999998 7788899999999999999888
Q ss_pred CCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccc
Q 003465 186 VGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI 265 (818)
Q Consensus 186 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 265 (818)
.+.+|..+... ..+..|.++++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+
T Consensus 163 ~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l 225 (328)
T 4fcg_A 163 LTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI 225 (328)
T ss_dssp CCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred ccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence 88888766540 01112333444444444444444 334444444455555555555442 33345
Q ss_pred cCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCE
Q 003465 266 GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLER 345 (818)
Q Consensus 266 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 345 (818)
..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..++.+++|+.
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 55555555555555555555555555555555555555555555555555666666666666655566666666666666
Q ss_pred EEcCCCcc
Q 003465 346 VDMSSNKL 353 (818)
Q Consensus 346 L~Ls~n~l 353 (818)
+++..+.+
T Consensus 306 l~l~~~~~ 313 (328)
T 4fcg_A 306 ILVPPHLQ 313 (328)
T ss_dssp EECCGGGS
T ss_pred EeCCHHHH
Confidence 66554443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-29 Score=268.75 Aligned_cols=286 Identities=20% Similarity=0.198 Sum_probs=195.7
Q ss_pred CCCCCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCccccc
Q 003465 60 HSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTG 139 (818)
Q Consensus 60 ~~~~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 139 (818)
...+|.|.|+ |+..+ ..+..+|.. + .++|++|++++|.+++..+..|.++++|++|+|++|.+++
T Consensus 26 ~~~~C~~~~~-c~~~~-----------~~l~~iP~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSS-----------GSLNSIPSG-L--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90 (353)
T ss_dssp -CCEECTTSE-EECCS-----------TTCSSCCTT-C--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cCCCCCCCeE-eeCCC-----------CCccccccc-c--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc
Confidence 4567999988 75322 112222332 2 2589999999999988777789999999999999999998
Q ss_pred CCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCc-cCCCCCCCCcEEEcccC-cCCccCCccc
Q 003465 140 TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP-FTLGHLTQLTTLKLFSN-QINGCIPLDF 217 (818)
Q Consensus 140 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~l 217 (818)
..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+ ..+..+++|++|++++| .+....+..|
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 778889999999999999999986555568889999999999998885433 36888899999999888 4666667778
Q ss_pred cCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccC---CCCC
Q 003465 218 GNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLG---RLTS 294 (818)
Q Consensus 218 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~ 294 (818)
.++++|++|++++|++++..+..+..+++|++|++++|.++......+..+++|++|++++|.+++..+..+. ..+.
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence 8888888888888888877788888888888888888887643323334577788888888877754433222 2334
Q ss_pred CCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccC
Q 003465 295 LSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSL 374 (818)
Q Consensus 295 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 374 (818)
++.++++++.+.+. .+. .+|..+..+++|+.|++++|+++...+..+..+++|++|++++
T Consensus 251 l~~l~L~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 251 IKKFTFRNVKITDE-------------------SLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CCEEEEESCBCCHH-------------------HHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hhccccccccccCc-------------------chh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 44444444444321 000 2344455555555666665555532222235556666666666
Q ss_pred CcCCCC
Q 003465 375 NQLSGP 380 (818)
Q Consensus 375 n~l~~~ 380 (818)
|.+.+.
T Consensus 311 N~~~~~ 316 (353)
T 2z80_A 311 NPWDCS 316 (353)
T ss_dssp SCBCCC
T ss_pred CCccCc
Confidence 655543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-31 Score=311.16 Aligned_cols=404 Identities=15% Similarity=0.104 Sum_probs=242.9
Q ss_pred cCCCCCCcEEEcCCCCC---cccCCcccc------------CCCcCceecccCcccccCCCCCCCCC--CCCcEEECcCC
Q 003465 97 FSCFPNLESFRIWYSNI---SGNIPSEIG------------ALSKLQILDLSHNNLTGTIPSKLGNL--NNLVELYLSRS 159 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~---~~~~~~~~~------------~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~n 159 (818)
+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+|++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 56788899999977542 133343333 67888888888888776555555543 34888888887
Q ss_pred C-CCC-CCccccCCCCCCCEEEccCCCCCCC----CccCCCCCCCCcEEEcccCcCCc----cCCccccCCCCCCEEEcc
Q 003465 160 N-LNG-PIPSTLGHLTRLSILDLSSNSLVGP----IPFTLGHLTQLTTLKLFSNQING----CIPLDFGNLRHLKEVDLS 229 (818)
Q Consensus 160 ~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~ 229 (818)
. ++. .++....++++|++|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|++|+++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 6 211 1122234678888888888877654 33344567888888888888762 334445677888888888
Q ss_pred CCcCCCCCCCCCCCCCcceEEEccCCCCC---CCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC
Q 003465 230 GNKLNGPIASTIGDLTNLNSLDLSSKQLS---GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 230 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+|.+.+ ++..+..+++|++|+++..... ...+..+..+++|+.|+++++... .+|..+..+++|++|++++|.+.
T Consensus 229 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 229 DFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp SCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCC
T ss_pred CccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCC
Confidence 887764 5566777788888888753322 233345666777788777765333 45666667777888888777754
Q ss_pred CCCc-hhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCC-----------CcccccCC-cCcCCCCCCCEEecc
Q 003465 307 GPIP-PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSS-----------NKLEGPIP-LTIGDLTNLIYLDLS 373 (818)
Q Consensus 307 ~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~~~-~~l~~l~~L~~L~Ls 373 (818)
+... ..+..+++|+.|+++++...+.++.....+++|++|++++ |.+++... .....+++|++|+++
T Consensus 307 ~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386 (592)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred HHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence 3322 3356677777777773322222333345567777777773 44442211 112346677777777
Q ss_pred CCcCCCCCCcccCC-CCCCCEEEcc----CCcCccc-----CCccccCCCCCCEEecccCc--CcccCCccc-cCCCCCC
Q 003465 374 LNQLSGPIPSTFGH-LTLLKFLNLN----SNKLNGS-----IPSELMNCFSLQSLILSNNS--LTGRIPSEI-RNLSYLH 440 (818)
Q Consensus 374 ~n~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l-~~l~~L~ 440 (818)
.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..+ ..+++|+
T Consensus 387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence 67766554444443 6677777775 4555542 22334556777777776443 444433333 2366677
Q ss_pred EEECcCCcCCccCChhh-hcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCcc
Q 003465 441 ELDLSLNFISGMTPPQH-FKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDG 519 (818)
Q Consensus 441 ~L~Ls~N~l~~~~p~~~-~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~ 519 (818)
.|++++|.+++.....+ ..+. +|+.|++++|.+++... +..+..+++|+.|++++|++++
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~------~L~~L~l~~n~l~~~~~-------------~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCP------NLQKLEMRGCCFSERAI-------------AAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCT------TCCEEEEESCCCBHHHH-------------HHHHHHCSSCCEEEEESCBCCT
T ss_pred EeeccCCCCCHHHHHHHHhcCc------ccCeeeccCCCCcHHHH-------------HHHHHhcCccCeeECcCCcCCH
Confidence 77777776665322222 2222 56666666666543311 1133455666666666666665
Q ss_pred CC
Q 003465 520 TI 521 (818)
Q Consensus 520 ~~ 521 (818)
..
T Consensus 528 ~~ 529 (592)
T 3ogk_B 528 TG 529 (592)
T ss_dssp TC
T ss_pred HH
Confidence 43
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-29 Score=262.82 Aligned_cols=250 Identities=23% Similarity=0.230 Sum_probs=142.9
Q ss_pred CCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccC--C
Q 003465 64 CKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGT--I 141 (818)
Q Consensus 64 c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~ 141 (818)
|.|.++.|+..+ +..++.. + .++|++|+|++|.+....+..|.++++|++|+|++|.++.. .
T Consensus 7 C~~~~l~c~~~~-------------l~~ip~~-~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 7 CSGTEIRCNSKG-------------LTSVPTG-I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp EETTEEECCSSC-------------CSSCCSC-C--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred eCCCEEEcCCCC-------------cccCCCC-C--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence 789999996432 1111221 1 24677777777777744444567777777777777776632 2
Q ss_pred CCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCc-cCCCCCCCCcEEEcccCcCCccCCccccCC
Q 003465 142 PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP-FTLGHLTQLTTLKLFSNQINGCIPLDFGNL 220 (818)
Q Consensus 142 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 220 (818)
|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.++
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 444556677777777777766 455556667777777777776665433 356666666666666666665555556666
Q ss_pred CCCCEEEccCCcCCC-CCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEE
Q 003465 221 RHLKEVDLSGNKLNG-PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLD 299 (818)
Q Consensus 221 ~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 299 (818)
++|++|++++|.+.+ ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 666666666666554 3445555555555555555555544444455555555555555555444333444444444444
Q ss_pred ccCCcCCCCCchhhcCCC-CCCeeeccCCcCC
Q 003465 300 LSHNSLFGPIPPTLSHLT-RLTTLKLFSNQIN 330 (818)
Q Consensus 300 Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~ 330 (818)
+++|.+.+..+..+..++ +|+.|++++|.+.
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 444444444444444432 4444444444443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-28 Score=265.56 Aligned_cols=276 Identities=21% Similarity=0.221 Sum_probs=138.9
Q ss_pred CCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEE
Q 003465 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 100 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 179 (818)
++.....+++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344455666666666 3444443 3666777777766654444666666666666666666655555666666666666
Q ss_pred ccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCC-ccccCCCCCCEEEccCCc-CCCCCCCCCCCCCcceEEEccCCCC
Q 003465 180 LSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP-LDFGNLRHLKEVDLSGNK-LNGPIASTIGDLTNLNSLDLSSKQL 257 (818)
Q Consensus 180 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l 257 (818)
+++|.+++..+..+.++++|++|++++|+++...+ ..+.++++|++|++++|. +....+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666664444345666666666666666653322 245555566666665552 3333334444455555555555544
Q ss_pred CCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccc
Q 003465 258 SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI 337 (818)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 337 (818)
++ ..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+
T Consensus 187 ~~------------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 187 QS------------------------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CE------------------------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred Cc------------------------cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 44 444444445555555555555432222223334555555555555543322211
Q ss_pred ---cCCCCCCEEEcCCCcccc----cCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCc
Q 003465 338 ---GNLENLERVDMSSNKLEG----PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN 402 (818)
Q Consensus 338 ---~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 402 (818)
...+.++.++++++.+.+ .+|..+..+++|+.|++++|+++...+..|..+++|++|++++|++.
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 123344555555554432 12333344444444444444444222222334444444444444443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-28 Score=257.94 Aligned_cols=227 Identities=24% Similarity=0.253 Sum_probs=103.8
Q ss_pred CCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCC--CccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEE
Q 003465 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGP--IPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVD 227 (818)
Q Consensus 150 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 227 (818)
+|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+.. +|..+.++++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence 444444444444422222344444444444444444321 12333344555555555555442 333445555555555
Q ss_pred ccCCcCCCCCC-CCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCC-cCCcccCCCCCCCEEEccCCcC
Q 003465 228 LSGNKLNGPIA-STIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG-PIPSTLGRLTSLSDLDLSHNSL 305 (818)
Q Consensus 228 l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l 305 (818)
+++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 55555543332 344455555555555555554444445555555555555555543 3444445555555555555555
Q ss_pred CCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCC-CCCEEeccCCcC
Q 003465 306 FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLT-NLIYLDLSLNQL 377 (818)
Q Consensus 306 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l 377 (818)
.+..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+..+..++ +|++|++++|.+
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 444444444444444444444444433333333444444444444444433333333332 333333333333
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=254.85 Aligned_cols=236 Identities=22% Similarity=0.306 Sum_probs=209.2
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
..+++++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 67888888999999999999998 78888889999999999999888 678888888888888
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++++|++.+.+|..+... .....+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 888888777777655431 12344677899999999999999 78889999999999999999999
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG 362 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 362 (818)
+ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..++
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 5 666799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeccCCcCC
Q 003465 363 DLTNLIYLDLSLNQLS 378 (818)
Q Consensus 363 ~l~~L~~L~Ls~n~l~ 378 (818)
.+++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 9999999999987665
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-31 Score=308.20 Aligned_cols=406 Identities=14% Similarity=0.079 Sum_probs=303.7
Q ss_pred CccccCCCcCceecccCccc---ccCCCCCCC------------CCCCCcEEECcCCCCCCCCccccCCC--CCCCEEEc
Q 003465 118 PSEIGALSKLQILDLSHNNL---TGTIPSKLG------------NLNNLVELYLSRSNLNGPIPSTLGHL--TRLSILDL 180 (818)
Q Consensus 118 ~~~~~~l~~L~~L~Ls~n~l---~~~~p~~~~------------~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L 180 (818)
+..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 34567889999999988643 134554444 78999999999998886666666553 45999999
Q ss_pred cCCCC-CC-CCccCCCCCCCCcEEEcccCcCCcc----CCccccCCCCCCEEEccCCcCCCC----CCCCCCCCCcceEE
Q 003465 181 SSNSL-VG-PIPFTLGHLTQLTTLKLFSNQINGC----IPLDFGNLRHLKEVDLSGNKLNGP----IASTIGDLTNLNSL 250 (818)
Q Consensus 181 ~~n~l-~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L 250 (818)
++|.. +. .++....++++|++|+|++|.+++. ++..+.++++|++|++++|.+++. ++..+.++++|+.|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 99862 11 1222234789999999999988755 333456789999999999998732 33345678999999
Q ss_pred EccCCCCCCCCCccccCCCCCcEEEccccccC---CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCC
Q 003465 251 DLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT---GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327 (818)
Q Consensus 251 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 327 (818)
++++|.+.+ ++..+..+++|++|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCC
Confidence 999999885 6678888999999999864333 23445678889999999998643 467778888999999999999
Q ss_pred cCCCCcC-ccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccC-----------CcCCCC-CCcccCCCCCCCEE
Q 003465 328 QINGSIP-LGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSL-----------NQLSGP-IPSTFGHLTLLKFL 394 (818)
Q Consensus 328 ~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~-~~~~~~~l~~L~~L 394 (818)
.+++... ..+..+++|+.|+++++-..+.++.....+++|++|++++ |.+++. ++.....+++|++|
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 9765433 3468899999999994332223333446788999999993 566543 22234568999999
Q ss_pred EccCCcCcccCCccccC-CCCCCEEecc----cCcCccc-----CCccccCCCCCCEEECcCCc--CCccCChhhhc-Cc
Q 003465 395 NLNSNKLNGSIPSELMN-CFSLQSLILS----NNSLTGR-----IPSEIRNLSYLHELDLSLNF--ISGMTPPQHFK-QK 461 (818)
Q Consensus 395 ~L~~N~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~~~~-~~ 461 (818)
+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|+.|++++|. +++..+..+.. +.
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 99999998877666665 8999999997 6677753 33346779999999998654 66655544443 33
Q ss_pred cccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccC-CcccccCCCCCCeeeCcCCC
Q 003465 462 HSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGT-IPLEMGKIIFLEYLDLSYNN 540 (818)
Q Consensus 462 ~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~ 540 (818)
+|+.|++++|.+++.. ++..+..+++|+.|++++|.+++. ++.....+++|++|++++|+
T Consensus 464 ------~L~~L~L~~n~l~~~~-------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 464 ------NVRWMLLGYVGESDEG-------------LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp ------TCCEEEECSCCSSHHH-------------HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ------cceEeeccCCCCCHHH-------------HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 7999999999987532 223567789999999999999866 44455789999999999999
Q ss_pred Cccc
Q 003465 541 IPGT 544 (818)
Q Consensus 541 l~g~ 544 (818)
+++.
T Consensus 525 it~~ 528 (592)
T 3ogk_B 525 ASMT 528 (592)
T ss_dssp CCTT
T ss_pred CCHH
Confidence 8764
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=249.08 Aligned_cols=206 Identities=26% Similarity=0.214 Sum_probs=106.1
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCC-CCCCCccccCCCCCCCEEE
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN-LNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ 179 (818)
++|++|++++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|. +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455566666555555555555555555555555555555445555555555555555554 4443345555555555555
Q ss_pred ccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC
Q 003465 180 LSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 180 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
+++|.+++..|..+.++++|++|++++|.+++..+..|.++++|++|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------ 167 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------------------------ 167 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE------------------------
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc------------------------
Confidence 55555554444445555555555555555544433344444444444444444443
Q ss_pred CCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 260 PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 260 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 33333444444444445444444444444555555555555555555444444555555555555555544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=258.82 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=59.9
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35566666666666555555666666666666666665555555555666666666666555444444555555555555
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEccc
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~ 206 (818)
++|.++...+..+.++++|++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCC
Confidence 55555544334455555555555554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=256.67 Aligned_cols=227 Identities=22% Similarity=0.225 Sum_probs=101.5
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555555555555555555555555555555444445555555555555555555433334555555555555
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
++|.++...+..|.++++|++|++++|. .+....+..|.++++|++|++++|.++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELK-----------------------RLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCC-----------------------CcceeCcchhhcccccCeecCCCCcCcc-
Confidence 5555544333344444444444444422 1221122234444444444444444431
Q ss_pred CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCC
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL 340 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 340 (818)
+| .+..+++|++|+|++|.+++..|..|..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 12 13334444444444444443334444444444444444444443333333334444444444444433333333333
Q ss_pred CCCCEEEcCCCc
Q 003465 341 ENLERVDMSSNK 352 (818)
Q Consensus 341 ~~L~~L~Ls~n~ 352 (818)
++|+.|++++|.
T Consensus 279 ~~L~~L~L~~Np 290 (440)
T 3zyj_A 279 HHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEcCCCC
Confidence 344444444433
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-27 Score=245.21 Aligned_cols=254 Identities=25% Similarity=0.246 Sum_probs=130.3
Q ss_pred cEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCC
Q 003465 152 VELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231 (818)
Q Consensus 152 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 231 (818)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45555555554 334322 245555555555555444444555555555555555555444444555555555555544
Q ss_pred c-CCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCc
Q 003465 232 K-LNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIP 310 (818)
Q Consensus 232 ~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 310 (818)
. +.... +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 91 ~~l~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLRSVD------------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCCCCC------------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCccccC------------------------HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 3 33333 3344444444444444444444444444555555555555555554444
Q ss_pred hhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 003465 311 PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL 390 (818)
Q Consensus 311 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 390 (818)
..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 44555555555555555555433344555666666666666666555556666666666666666666555455666666
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccc
Q 003465 391 LKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433 (818)
Q Consensus 391 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 433 (818)
|+.|++++|.+....+.. .-...++.+..+.+.+....|..+
T Consensus 227 L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred cCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 666666666655332211 001123333344555555555544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=255.00 Aligned_cols=247 Identities=23% Similarity=0.260 Sum_probs=124.9
Q ss_pred CceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEccc
Q 003465 127 LQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 127 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 206 (818)
.+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456666666666 4554443 4666666666666655566666666666666666666655555566666666666666
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCC
Q 003465 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIP 286 (818)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (818)
|+++...+..|.++++|++|++++|+++...+..+..+++|+.|++++|. .+....+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~~ 189 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----------------------KLEYISE 189 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEECT
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----------------------CccccCh
Confidence 66655444445555555555555555554433444444444444444422 1221112
Q ss_pred cccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCC
Q 003465 287 STLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTN 366 (818)
Q Consensus 287 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 366 (818)
..+..+++|+.|++++|.+.+. | .+..+++|+.|+|++|++.+..|..+..+++|+.|++++|++.+..+..+..+++
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 2344444555555555544422 1 2334444444444444444444444444444444444444444444444444444
Q ss_pred CCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcC
Q 003465 367 LIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401 (818)
Q Consensus 367 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 401 (818)
|+.|+|++|++++..+..+..+++|+.|+|++|.+
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 44444444444443333344444444444444433
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-26 Score=252.10 Aligned_cols=245 Identities=23% Similarity=0.263 Sum_probs=105.9
Q ss_pred CceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEccc
Q 003465 127 LQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 127 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 206 (818)
.+.++.+++.++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 344555555554 3444332 3455555555555544444444555555555555544443334444444444444444
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccc-cCCcC
Q 003465 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN-LTGPI 285 (818)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~ 285 (818)
|+++...+ ..+..+++|++|++++|.++...+..+..+++|++|++++|+ +....
T Consensus 122 n~l~~~~~------------------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTTIPN------------------------GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSSCCT------------------------TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCeeCH------------------------hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 44443333 334444444444444444443333334444444444444422 22122
Q ss_pred CcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCC
Q 003465 286 PSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLT 365 (818)
Q Consensus 286 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 365 (818)
+..|..+++|++|++++|.+.. +| .+..+++|+.|+|++|++++..|..+..+++|+.|++++|++.+..+..+..++
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred cchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 2234444555555555554442 12 233344444444444444433344444444444444444444443344444444
Q ss_pred CCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003465 366 NLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNK 400 (818)
Q Consensus 366 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 400 (818)
+|+.|+|++|++++..+..|..+++|+.|+|++|.
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 44444444444443333333334444444444443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-25 Score=253.02 Aligned_cols=265 Identities=28% Similarity=0.348 Sum_probs=137.7
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
++++|++++|.++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4677777777766 5555544 56777777777666 3443 3556666666666665 3443 45566666666
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPL 261 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 261 (818)
+|.+++ +|. .+++|++|++++|+++. +|.. + ++|++|++++|.+++ +
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l------------------------~~L~~L~Ls~N~l~~-l 156 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---P------------------------PGLQELSVSDNQLAS-L 156 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---C------------------------TTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---C------------------------CCCCEEECcCCcCCC-c
Confidence 665553 222 33445555555554442 2221 1 344444444444442 1
Q ss_pred CccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCC
Q 003465 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLE 341 (818)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 341 (818)
|. .+++|+.|++++|.++. +| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++. +|
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~------- 217 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LP------- 217 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CC-------
T ss_pred CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cC-------
Confidence 21 12344444555544442 22 223445555555554442 111 12344444444444431 22
Q ss_pred CCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003465 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILS 421 (818)
Q Consensus 342 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 421 (818)
. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|+|+
T Consensus 218 -----------------~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 218 -----------------A---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp -----------------C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred -----------------C---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 1 12445555555555553 22 23455666666666665 3443 45667777777
Q ss_pred cCcCcccCCccccCCCCCCEEECcCCcCCccCChhhh
Q 003465 422 NNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHF 458 (818)
Q Consensus 422 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 458 (818)
+|.++ .+|..+.++++|+.|+|++|++++..|..+.
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 77776 5566677777777777777777766665544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-28 Score=258.71 Aligned_cols=245 Identities=24% Similarity=0.294 Sum_probs=133.7
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccc-cCCCCCCC-------CCCCCcEEECcCCCCCCCCcccc--C
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLT-GTIPSKLG-------NLNNLVELYLSRSNLNGPIPSTL--G 170 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~p~~l--~ 170 (818)
++|++|++++|.+ .+|..+... |++|+|++|.++ ..+|..+. ++++|++|++++|.+++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3445555555555 444444332 555555555552 22333332 34455555555555554444443 4
Q ss_pred CCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCC-----CCCCEEEccCCcCCCCCCCCCCCCC
Q 003465 171 HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNL-----RHLKEVDLSGNKLNGPIASTIGDLT 245 (818)
Q Consensus 171 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~ 245 (818)
.+++|++|+|++|.+++. |..++.+ ++|++|++++|++.+..+..+..++
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-------------------------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-------------------------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCCccEEEccCCCCcch-------------------------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 445555555555554433 3333333 4555555555555544445555555
Q ss_pred cceEEEccCCCCCCC--CCccc--cCCCCCcEEEccccccCCc--CC-cccCCCCCCCEEEccCCcCCCCCc-hhhcCCC
Q 003465 246 NLNSLDLSSKQLSGP--LPQEI--GYLENLVYLSLNVNNLTGP--IP-STLGRLTSLSDLDLSHNSLFGPIP-PTLSHLT 317 (818)
Q Consensus 246 ~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~~--~~-~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~ 317 (818)
+|++|++++|.+.+. .+..+ ..+++|++|++++|.+++. ++ ..+..+++|++|++++|.+.+..| ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 555555555554432 12222 4555666666666665521 11 223455666677777776665543 3445567
Q ss_pred CCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCC
Q 003465 318 RLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSG 379 (818)
Q Consensus 318 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 379 (818)
+|+.|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|.+++
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7777777777776 5665554 6777777777777755 44 7777778888888877764
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-28 Score=256.62 Aligned_cols=256 Identities=20% Similarity=0.227 Sum_probs=196.0
Q ss_pred ccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCC-CCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCC
Q 003465 121 IGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLN-GPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199 (818)
Q Consensus 121 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 199 (818)
++..++|++|++++|.+ .+|..+... |++|+|++|.+. ..+|..+.. ....+.++++|
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~-----------------~~~~~~~l~~L 97 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILF-----------------GALRVLGISGL 97 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHH-----------------HHHHHHTTSCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHH-----------------HHHHhcCcCCc
Confidence 45566677777777776 455544332 556666655552 122222210 00001146677
Q ss_pred cEEEcccCcCCccCCccc--cCCCCCCEEEccCCcCCCCCCCCCCCC-----CcceEEEccCCCCCCCCCccccCCCCCc
Q 003465 200 TTLKLFSNQINGCIPLDF--GNLRHLKEVDLSGNKLNGPIASTIGDL-----TNLNSLDLSSKQLSGPLPQEIGYLENLV 272 (818)
Q Consensus 200 ~~L~L~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 272 (818)
++|++++|.+++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+++..+..+..+++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 777777777776667665 7889999999999999876 7777766 8999999999999988889999999999
Q ss_pred EEEccccccCCc--CCccc--CCCCCCCEEEccCCcCCCC--Cc-hhhcCCCCCCeeeccCCcCCCCcC-ccccCCCCCC
Q 003465 273 YLSLNVNNLTGP--IPSTL--GRLTSLSDLDLSHNSLFGP--IP-PTLSHLTRLTTLKLFSNQINGSIP-LGIGNLENLE 344 (818)
Q Consensus 273 ~L~L~~n~l~~~--~~~~l--~~l~~L~~L~Ls~n~l~~~--~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 344 (818)
+|++++|++.+. .+..+ ..+++|++|++++|.+.+. ++ ..+..+++|+.|++++|++.+..| ..+..+++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 999999998764 23344 8899999999999999842 22 344678999999999999998775 4566789999
Q ss_pred EEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcc
Q 003465 345 RVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG 403 (818)
Q Consensus 345 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 403 (818)
.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999998 6777766 8999999999999976 55 8999999999999999975
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=248.59 Aligned_cols=268 Identities=26% Similarity=0.328 Sum_probs=179.7
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|.+++ +|. .+++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L----- 103 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGL----- 103 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTC-----
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCC-----
Confidence 35888999988888 6676655 67888888888777 4444 45666666666666552 332 33444
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
++|++++|.+++. +. .+++|+.|++++|.++. +|.. +++|++|++++|.+++
T Consensus 104 -------------------~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~- 155 (622)
T 3g06_A 104 -------------------LELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS- 155 (622)
T ss_dssp -------------------CEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred -------------------CEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-
Confidence 4444444444321 11 23455666666665553 3322 2556666666665553
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCC
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 364 (818)
+|. . +++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+
T Consensus 156 l~~---~------------------------~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~ 200 (622)
T 3g06_A 156 LPA---L------------------------PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LP 200 (622)
T ss_dssp CCC---C------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred cCC---c------------------------cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---cc
Confidence 221 1 2345555555555553 33 334667777777777764 332 23
Q ss_pred CCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEEC
Q 003465 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDL 444 (818)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 444 (818)
++|+.|++++|.++. +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++
T Consensus 201 ~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence 688899999998884 443 34789999999999985 55 45689999999999998 5665 6789999999
Q ss_pred cCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccc
Q 003465 445 SLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGL 490 (818)
Q Consensus 445 s~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~ 490 (818)
++|.++ .+|..+..+. +|+.|++++|.+++.+|..+..+
T Consensus 269 s~N~L~-~lp~~l~~l~------~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 269 YRNQLT-RLPESLIHLS------SETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CSSCCC-SCCGGGGGSC------TTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCCCC-cCCHHHhhcc------ccCEEEecCCCCCCcCHHHHHhc
Confidence 999999 5577777776 89999999999999988876644
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=227.36 Aligned_cols=217 Identities=27% Similarity=0.304 Sum_probs=140.2
Q ss_pred CCCCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccC
Q 003465 61 SDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGT 140 (818)
Q Consensus 61 ~~~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 140 (818)
.++|.|.|+.|...+. .++++++++.++ .+|..+. ++|++|+|++|.+++.
T Consensus 2 ~~~C~~~~~~C~c~~~--------------------------~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~ 52 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNN--------------------------KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSL 52 (270)
T ss_dssp CCCBGGGTCSBEEETT--------------------------TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCC
T ss_pred CccCCCCCCCCEeCCC--------------------------CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCee
Confidence 5789999999963222 345556666655 3444443 4677777777777755
Q ss_pred CCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCC
Q 003465 141 IPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNL 220 (818)
Q Consensus 141 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 220 (818)
.+..|.++++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|.++
T Consensus 53 ~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 132 (270)
T 2o6q_A 53 PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132 (270)
T ss_dssp CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC
Confidence 55567777777777777777765444555667777777777777765555556667777777777777766656666666
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEc
Q 003465 221 RHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDL 300 (818)
Q Consensus 221 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 300 (818)
++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 77777777777666555555666666666666666666555555566666666666666666544445555666666666
Q ss_pred cCCcCC
Q 003465 301 SHNSLF 306 (818)
Q Consensus 301 s~n~l~ 306 (818)
++|.+.
T Consensus 213 ~~N~~~ 218 (270)
T 2o6q_A 213 QENPWD 218 (270)
T ss_dssp CSSCBC
T ss_pred cCCCee
Confidence 666654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-27 Score=255.22 Aligned_cols=257 Identities=21% Similarity=0.179 Sum_probs=129.8
Q ss_pred CcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccC
Q 003465 103 LESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182 (818)
Q Consensus 103 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (818)
++.++++.+.+...+...+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444455555544444444455566666666666665555556666666666666666653322 55566666666666
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLP 262 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 262 (818)
|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 6555321 2255556666655555433322 3445555555555554444445555555555555555554333
Q ss_pred cccc-CCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCC
Q 003465 263 QEIG-YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLE 341 (818)
Q Consensus 263 ~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 341 (818)
..+. .+++|++|++++|.+++. +. ... +++|++|++++|++++ +|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~ 214 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVV------------------------FAKLKTLDLSSNKLAF-MGPEFQSAA 214 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCC------------------------CTTCCEEECCSSCCCE-ECGGGGGGT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccc------------------------cccCCEEECCCCcCCc-chhhhcccC
Confidence 3332 344555555555554432 11 122 4444555555554442 222344445
Q ss_pred CCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCC-CCCCcccCCCCCCCEEEcc
Q 003465 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLS-GPIPSTFGHLTLLKFLNLN 397 (818)
Q Consensus 342 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~ 397 (818)
+|+.|++++|++.+ +|..+..+++|+.|++++|.+. +.++..+..+++|+.|+++
T Consensus 215 ~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 55555555555542 3444455555555555555554 3444455555555555555
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-27 Score=254.90 Aligned_cols=269 Identities=23% Similarity=0.227 Sum_probs=197.9
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
..++.++++.+.+....+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 346677778877765555556677788888888888887777788888888888888888875443 777788888888
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
++|.+++.. ..++|++|++++|++++..+. .+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKITML 135 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---------------------------CCSSCEEEECCSSCCCSG
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---------------------------ccCCCCEEECCCCCCCCc
Confidence 887776422 235666666666665533222 234555555555655555
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCchhh-cCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCC
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTL-SHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGD 363 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 363 (818)
.+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. + ....+++|+.|++++|++.+. +..+..
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~ 212 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQS 212 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGG
T ss_pred cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcc
Confidence 55555666677777777777666555555 3678888888888888754 3 233589999999999999865 445889
Q ss_pred CCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCc-ccCCccccCCCCCCEEecccC-cCcccCCc
Q 003465 364 LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN-GSIPSELMNCFSLQSLILSNN-SLTGRIPS 431 (818)
Q Consensus 364 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~ 431 (818)
+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.++..+..+++|+.|++++| .+.+..|.
T Consensus 213 l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 999999999999998 46778999999999999999998 778888999999999999955 45655544
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-30 Score=296.69 Aligned_cols=405 Identities=15% Similarity=0.126 Sum_probs=190.3
Q ss_pred cCCCCCCcEEEcCCCCCccc---CCc------------cccCCCcCceecccCcccccCCCCCCC-CCCCCcEEECcCC-
Q 003465 97 FSCFPNLESFRIWYSNISGN---IPS------------EIGALSKLQILDLSHNNLTGTIPSKLG-NLNNLVELYLSRS- 159 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~---~~~------------~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n- 159 (818)
+..+++|++|+++++..... .|. .+..+++|++|+|++|.+++..+..+. .+++|++|+|++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 56678888888887653211 111 123566777777777776655444443 4667777777776
Q ss_pred CCCCC-CccccCCCCCCCEEEccCCCCCCCCccCC----CCCCCCcEEEcccCc--CCc-cCCccccCCCCCCEEEccCC
Q 003465 160 NLNGP-IPSTLGHLTRLSILDLSSNSLVGPIPFTL----GHLTQLTTLKLFSNQ--ING-CIPLDFGNLRHLKEVDLSGN 231 (818)
Q Consensus 160 ~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L~l~~n 231 (818)
.++.. ++..+.++++|++|+|++|.+++..+..+ ..+++|++|++++|. +.. .++..+.++++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 33321 23333466777777777776654333222 255567777766665 211 01111233466666666665
Q ss_pred cCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEE-EccCCcCCCCCc
Q 003465 232 KLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL-DLSHNSLFGPIP 310 (818)
Q Consensus 232 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~ 310 (818)
...+.++..+..+++|+.|+++.+... +..+.+.+ ++..+.++++|+.| .+.+... +.++
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~ 282 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAE-----------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLP 282 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCC-----------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGG
T ss_pred CcHHHHHHHHhcCCcceEcccccccCc-----------------cchhhHHH-HHHHHhcCCCcccccCCcccch-hhHH
Confidence 211123444445556666665443210 11111111 11223344444444 2221111 1122
Q ss_pred hhhcCCCCCCeeeccCCcCCCCcC-ccccCCCCCCEEEcCCCccccc-CCcCcCCCCCCCEEeccC---------CcCCC
Q 003465 311 PTLSHLTRLTTLKLFSNQINGSIP-LGIGNLENLERVDMSSNKLEGP-IPLTIGDLTNLIYLDLSL---------NQLSG 379 (818)
Q Consensus 311 ~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~---------n~l~~ 379 (818)
..+..+++|+.|++++|.+++... ..+..+++|+.|++++| +... ++.....+++|++|++++ +.+++
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 222234444444444444332211 11234444444444444 2111 111111244455554422 22322
Q ss_pred CCCccc-CCCCCCCEEEccCCcCcccCCcccc-CCCCCCEEecc--c----CcCccc-----CCccccCCCCCCEEECcC
Q 003465 380 PIPSTF-GHLTLLKFLNLNSNKLNGSIPSELM-NCFSLQSLILS--N----NSLTGR-----IPSEIRNLSYLHELDLSL 446 (818)
Q Consensus 380 ~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~l~~l~~L~~L~Ls~ 446 (818)
.....+ ..+++|+.|.++.|.+++.....+. .+++|+.|+++ + |.+++. ++..+.++++|+.|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 111111 2245566666555555544333332 35566666666 2 333311 111234556666666655
Q ss_pred CcCCccCChhhhc-CccccccccccEEECCCCcCcccCCcccccccCCcccCChhh-cCCcCCCEEECCCCcCccCCcc-
Q 003465 447 NFISGMTPPQHFK-QKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEI-GNCSGLLNVTLSNNSLDGTIPL- 523 (818)
Q Consensus 447 N~l~~~~p~~~~~-~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~-~~l~~L~~L~Ls~N~l~~~~p~- 523 (818)
.+++..+..+.. .. +|+.|++++|.+++..+. .+ ..+++|+.|+|++|.+++..+.
T Consensus 442 -~l~~~~~~~l~~~~~------~L~~L~L~~~~i~~~~~~--------------~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAK------KMEMLSVAFAGDSDLGMH--------------HVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp -SCCHHHHHHHHHHCT------TCCEEEEESCCSSHHHHH--------------HHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred -cccHHHHHHHHHhch------hccEeeccCCCCcHHHHH--------------HHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 444433333322 22 566666666665543222 22 4466677777777777554443
Q ss_pred cccCCCCCCeeeCcCCCCc
Q 003465 524 EMGKIIFLEYLDLSYNNIP 542 (818)
Q Consensus 524 ~l~~l~~L~~L~ls~N~l~ 542 (818)
....+++|++|++++|+++
T Consensus 501 ~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp TGGGGGGSSEEEEESSCCB
T ss_pred HHHhCCCCCEEeeeCCCCC
Confidence 2344667777777777664
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-26 Score=257.12 Aligned_cols=217 Identities=24% Similarity=0.215 Sum_probs=111.8
Q ss_pred CCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEE
Q 003465 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLK 203 (818)
Q Consensus 124 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 203 (818)
+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3456666666666665555556666666666666666554333 5556666666666665553221 25555566
Q ss_pred cccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCcccc-CCCCCcEEEccccccC
Q 003465 204 LFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIG-YLENLVYLSLNVNNLT 282 (818)
Q Consensus 204 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~ 282 (818)
+++|.+++..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .+++|++|+|++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 655555543332 234555555555555555455555555555555555555554444443 4555555555555555
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCccc
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 354 (818)
+. +. ...+++|+.|+|++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 33 11 2234555555555555543222 24444555555555555442 3444444444444444444443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-26 Score=254.89 Aligned_cols=238 Identities=22% Similarity=0.223 Sum_probs=150.5
Q ss_pred CCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCE
Q 003465 146 GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKE 225 (818)
Q Consensus 146 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 225 (818)
..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++.. ..++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 445578888888888887777788888888888888888876554 777788888888888776432 2256666
Q ss_pred EEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcC
Q 003465 226 VDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305 (818)
Q Consensus 226 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 305 (818)
|++++|.+++..+.. +++|+.|++++|.+++..|.. ++.+++|+.|++++|.+
T Consensus 104 L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~------------------------~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLD------------------------EGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp EECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBC------------------------GGGGSSEEEEECTTSCC
T ss_pred EECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchh------------------------hcCCCCCCEEECCCCCC
Confidence 666666665543322 344555555555555444444 44445555555555555
Q ss_pred CCCCchhhc-CCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcc
Q 003465 306 FGPIPPTLS-HLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPST 384 (818)
Q Consensus 306 ~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 384 (818)
.+..|..+. .+++|+.|+|++|.+++..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred CCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchh
Confidence 444444443 45555555555555554311 2245666666666666665333 36666777777777777764 4556
Q ss_pred cCCCCCCCEEEccCCcCc-ccCCccccCCCCCCEEecc
Q 003465 385 FGHLTLLKFLNLNSNKLN-GSIPSELMNCFSLQSLILS 421 (818)
Q Consensus 385 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls 421 (818)
+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 667777777777777776 5566667777777777765
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-28 Score=281.37 Aligned_cols=405 Identities=16% Similarity=0.092 Sum_probs=245.4
Q ss_pred cccCCCcCceecccCccccc---CCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCC-C
Q 003465 120 EIGALSKLQILDLSHNNLTG---TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLG-H 195 (818)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~l~~---~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~ 195 (818)
.+.++++|++|+|+++.... ..|..++.. ....++.....+++|++|+|++|.+++..+..+. .
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~------------~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 128 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGY------------VYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS 128 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCB------------CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccch------------hhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHh
Confidence 46678899999999875321 122221100 0000111122344555555555554433333332 3
Q ss_pred CCCCcEEEcccC-cCCcc-CCccccCCCCCCEEEccCCcCCCCCCCC----CCCCCcceEEEccCCC--CCCC-CCcccc
Q 003465 196 LTQLTTLKLFSN-QINGC-IPLDFGNLRHLKEVDLSGNKLNGPIAST----IGDLTNLNSLDLSSKQ--LSGP-LPQEIG 266 (818)
Q Consensus 196 l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~--l~~~-~~~~l~ 266 (818)
+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+.. ...+++|++|++++|. ++.. +...+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 455555555555 22221 2222334556666666666554432222 2355677777777765 1110 111123
Q ss_pred CCCCCcEEEcccc-ccCCcCCcccCCCCCCCEEEccCCc-------CCCCCchhhcCCCCCCee-eccCCcCCCCcCccc
Q 003465 267 YLENLVYLSLNVN-NLTGPIPSTLGRLTSLSDLDLSHNS-------LFGPIPPTLSHLTRLTTL-KLFSNQINGSIPLGI 337 (818)
Q Consensus 267 ~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~l 337 (818)
.+++|++|++++| .++ .++..+..+++|+.|+++.+. +.+ ++..+.++++|+.| .+.+... +.++..+
T Consensus 209 ~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~ 285 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVY 285 (594)
T ss_dssp HCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGH
T ss_pred hCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHH
Confidence 4678888888887 333 366667778888888866553 222 34467889999999 4444332 3455555
Q ss_pred cCCCCCCEEEcCCCcccccCC-cCcCCCCCCCEEeccCCcCCCC-CCcccCCCCCCCEEEccC---------CcCcccCC
Q 003465 338 GNLENLERVDMSSNKLEGPIP-LTIGDLTNLIYLDLSLNQLSGP-IPSTFGHLTLLKFLNLNS---------NKLNGSIP 406 (818)
Q Consensus 338 ~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~---------N~l~~~~~ 406 (818)
..+++|+.|++++|.+.+... ..+..+++|+.|++++| ++.. ++.....+++|++|++++ +.+++...
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 678999999999999764332 23568899999999998 4322 222334589999999944 45554322
Q ss_pred cccc-CCCCCCEEecccCcCcccCCcccc-CCCCCCEEECc--C----CcCCccCCh-h----hhcCccccccccccEEE
Q 003465 407 SELM-NCFSLQSLILSNNSLTGRIPSEIR-NLSYLHELDLS--L----NFISGMTPP-Q----HFKQKHSIRDRLLTYVN 473 (818)
Q Consensus 407 ~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~p~-~----~~~~~~~~~~~~L~~l~ 473 (818)
..+. .+++|+.|++..|.+++..+..+. .+++|+.|+++ + |.+++.... . +..+. +|+.|+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~------~L~~L~ 438 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK------DLRRLS 438 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT------TCCEEE
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC------CccEEe
Confidence 2333 489999999999999876555554 58999999999 4 566533221 1 22233 799999
Q ss_pred CCCCcCcccCCcccccccCCcccCChhhcC-CcCCCEEECCCCcCccCCcccc-cCCCCCCeeeCcCCCCcccCCc---c
Q 003465 474 HQFNRLSGQIPMTIGGLSKLSGSVPSEIGN-CSGLLNVTLSNNSLDGTIPLEM-GKIIFLEYLDLSYNNIPGTVPE---F 548 (818)
Q Consensus 474 ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~g~ip~---~ 548 (818)
+++ .+++..+. .++. +++|+.|+|++|.+++..+..+ ..+++|++|++++|++++..+. .
T Consensus 439 L~~-~l~~~~~~--------------~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 439 LSG-LLTDKVFE--------------YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp CCS-SCCHHHHH--------------HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred ecC-cccHHHHH--------------HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 976 55543332 4444 8899999999999988777666 6799999999999999654433 1
Q ss_pred cccCCCCCcccCc
Q 003465 549 INRIMPADLVPMI 561 (818)
Q Consensus 549 ~~~~~~~~~~~~n 561 (818)
....+....+.+|
T Consensus 504 ~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 504 KLETMRSLWMSSC 516 (594)
T ss_dssp GGGGSSEEEEESS
T ss_pred hCCCCCEEeeeCC
Confidence 2234444444444
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=219.34 Aligned_cols=204 Identities=25% Similarity=0.308 Sum_probs=115.1
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
+|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56777777777766666666777777777777777765555566667777777777777665555666666677777776
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCcc-CCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcce----EEEccCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGC-IPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN----SLDLSSKQ 256 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~n~ 256 (818)
+|.+.+..+..+..+++|++|++++|.+++. +|..+.++++|++|++++|++++..+..+..+.+|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666655555566666666666666666542 355566666666666666665544444443333333 44444444
Q ss_pred CCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC
Q 003465 257 LSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 257 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+++..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 189 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 189 MNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 443222222 1224444444444444333333334444444444444433
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=218.11 Aligned_cols=133 Identities=26% Similarity=0.307 Sum_probs=63.7
Q ss_pred cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcc
Q 003465 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 205 (818)
+|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555554444445555555555555555544444444445555555555
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCcCCCC-CCCCCCCCCcceEEEccCCCCC
Q 003465 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGP-IASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
+|.+.+..+..+.++++|++|++++|.+++. +|..+..+++|++|++++|.++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 5544443333344444444444444444331 2333333344444444444333
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=209.49 Aligned_cols=202 Identities=26% Similarity=0.281 Sum_probs=134.4
Q ss_pred cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcc
Q 003465 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 205 (818)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5677888888887 4665554 568888888888876666677788888888888887775555556777777777777
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcC
Q 003465 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPI 285 (818)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (818)
+|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77777665566677777777777777776666666666667777777776666554444566666666666666666544
Q ss_pred CcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 286 PSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 286 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 445555566666666666655444444555555555555555543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-24 Score=220.48 Aligned_cols=207 Identities=27% Similarity=0.283 Sum_probs=99.9
Q ss_pred ccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCc
Q 003465 121 IGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLT 200 (818)
Q Consensus 121 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 200 (818)
+..+++|+.|++++|.++. + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3444555555555555542 1 234455555555555555543 1 2445555555555555555544444445555555
Q ss_pred EEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccc
Q 003465 201 TLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN 280 (818)
Q Consensus 201 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 280 (818)
+|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 55555555554444444555555555555555544444444445555555555555544444444444455555555555
Q ss_pred cCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcccc
Q 003465 281 LTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG 338 (818)
Q Consensus 281 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 338 (818)
+++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|.++|.+|.+++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 4444444444444455555544444322 23344444444444444444433
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=218.51 Aligned_cols=229 Identities=26% Similarity=0.294 Sum_probs=156.3
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.+..+..+++.++.+.+. ..+..+++|++|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|
T Consensus 17 ~~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 90 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred hHHHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEE
Confidence 345666777877777644 335678889999999998873 3 3578888899999988888753 367788888888
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 88888888766666777888888888888877666666777777777777777777665555666677777777777666
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG 362 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 362 (818)
+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.+.|.+|..++
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence 5555555666666666666666665555555556666666666665542 233455555555555555555444
Q ss_pred CC
Q 003465 363 DL 364 (818)
Q Consensus 363 ~l 364 (818)
.+
T Consensus 244 ~~ 245 (272)
T 3rfs_A 244 SV 245 (272)
T ss_dssp CB
T ss_pred cc
Confidence 33
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=211.30 Aligned_cols=204 Identities=26% Similarity=0.252 Sum_probs=138.4
Q ss_pred CcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCC
Q 003465 96 NFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175 (818)
Q Consensus 96 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 175 (818)
.+.+++++++++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++. +. ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 3566777788888777776 3454443 5777778888777766667777777777777777777643 32 2667777
Q ss_pred CEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCC
Q 003465 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSK 255 (818)
Q Consensus 176 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 255 (818)
++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 77777777776 45666677777777777777777666666777777777777777776665566666677777777777
Q ss_pred CCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC
Q 003465 256 QLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 256 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+++...+..+..+++|++|+|++|+++ .+|..+...++|+.|+|++|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 766554445556666666666666666 45555555566666666666554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=208.59 Aligned_cols=202 Identities=30% Similarity=0.279 Sum_probs=121.3
Q ss_pred ccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCc
Q 003465 121 IGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLT 200 (818)
Q Consensus 121 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 200 (818)
++++++++.++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 567777888888888777 4555443 577778888877776666677777777777777777764322 25667777
Q ss_pred EEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccc
Q 003465 201 TLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN 280 (818)
Q Consensus 201 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 280 (818)
+|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777666 455556666666666666666665555556666666666666666655444444555555555555555
Q ss_pred cCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcC
Q 003465 281 LTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQI 329 (818)
Q Consensus 281 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 329 (818)
++...+..+..+++|+.|++++|++. .+|..+..+++|+.|+|++|.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 55433333444555555555555544 2333333344444444444443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=204.15 Aligned_cols=190 Identities=28% Similarity=0.306 Sum_probs=104.8
Q ss_pred CCCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCC
Q 003465 62 DHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTI 141 (818)
Q Consensus 62 ~~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 141 (818)
+||.|.|+.|... .++++++++.+. .+|..+. ++|++|+|++|.+++..
T Consensus 3 ~Cp~~~gC~C~~~----------------------------~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~ 51 (251)
T 3m19_A 3 TCETVTGCTCNEG----------------------------KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLS 51 (251)
T ss_dssp -CHHHHSSEEEGG----------------------------GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCC
T ss_pred cCCCCCceEcCCC----------------------------CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccC
Confidence 5889999999521 133444444444 3333333 35666666666666555
Q ss_pred CCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCC
Q 003465 142 PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLR 221 (818)
Q Consensus 142 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 221 (818)
+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|++++..+..|.+++
T Consensus 52 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 52 DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC
Confidence 55566666666666666666655555556666666666666666554445555555566666655555544444455555
Q ss_pred CCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 222 HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 222 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
+|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5555555555555444444555555555555555555444444444455555555555444
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-24 Score=231.19 Aligned_cols=259 Identities=20% Similarity=0.199 Sum_probs=127.2
Q ss_pred EEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCC----ccccCCC-CCCEEEccCCcCCCCCCCCCCCC-----Ccc
Q 003465 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP----LDFGNLR-HLKEVDLSGNKLNGPIASTIGDL-----TNL 247 (818)
Q Consensus 178 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~L 247 (818)
+++++|.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666655555567777777766665444 4455555 56666666666654444333332 555
Q ss_pred eEEEccCCCCCCCCCcccc----CC-CCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcC-CCCCCe
Q 003465 248 NSLDLSSKQLSGPLPQEIG----YL-ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSH-LTRLTT 321 (818)
Q Consensus 248 ~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~ 321 (818)
++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+.. .+.. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCceeE
Confidence 5555555555543333222 22 44444444444444332222111 0111 134444
Q ss_pred eeccCCcCCCCc----CccccCCC-CCCEEEcCCCcccccCCcCc----CCC-CCCCEEeccCCcCCCC----CCcccCC
Q 003465 322 LKLFSNQINGSI----PLGIGNLE-NLERVDMSSNKLEGPIPLTI----GDL-TNLIYLDLSLNQLSGP----IPSTFGH 387 (818)
Q Consensus 322 L~L~~n~l~~~~----~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l----~~l-~~L~~L~Ls~n~l~~~----~~~~~~~ 387 (818)
|+|++|.+++.. +..+..++ +|+.|++++|.+.+..+..+ ..+ ++|+.|+|++|.+++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 444444444321 11222232 45555555555544333222 222 3555555555555432 2223333
Q ss_pred -CCCCCEEEccCCcCcccCC----ccccCCCCCCEEecccCcCccc-------CCccccCCCCCCEEECcCCcCCccCCh
Q 003465 388 -LTLLKFLNLNSNKLNGSIP----SELMNCFSLQSLILSNNSLTGR-------IPSEIRNLSYLHELDLSLNFISGMTPP 455 (818)
Q Consensus 388 -l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 455 (818)
.++|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+. ++..+.++++|+.||+++|++.+..+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 2356666666666654322 2234556666666666663322 222445666677777777777665444
Q ss_pred h
Q 003465 456 Q 456 (818)
Q Consensus 456 ~ 456 (818)
.
T Consensus 303 ~ 303 (362)
T 3goz_A 303 P 303 (362)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-23 Score=226.83 Aligned_cols=266 Identities=18% Similarity=0.149 Sum_probs=129.9
Q ss_pred EEccCCCCCCCCCccccCCCCCcEEEccccccCCcCC----cccCCCC-CCCEEEccCCcCCCCCchhhcCC-----CCC
Q 003465 250 LDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIP----STLGRLT-SLSDLDLSHNSLFGPIPPTLSHL-----TRL 319 (818)
Q Consensus 250 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-----~~L 319 (818)
++++.|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666655555555556666666666665444 4455555 56666666666665555444443 566
Q ss_pred CeeeccCCcCCCCcCcc----ccCC-CCCCEEEcCCCcccccCCcCc----CC-CCCCCEEeccCCcCCCCCCcccCCCC
Q 003465 320 TTLKLFSNQINGSIPLG----IGNL-ENLERVDMSSNKLEGPIPLTI----GD-LTNLIYLDLSLNQLSGPIPSTFGHLT 389 (818)
Q Consensus 320 ~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~~~~l----~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~ 389 (818)
++|+|++|.+++..+.. +..+ ++|+.|++++|.+.+..+..+ .. .++|++|++++|.+++..+..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----- 157 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE----- 157 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-----
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-----
Confidence 66666666655444332 2222 455555555555554333222 12 135555555555554322111
Q ss_pred CCCEEEccCCcCcccCCccccCCC-CCCEEecccCcCcccCCccc----cCC-CCCCEEECcCCcCCccCChhhhcCccc
Q 003465 390 LLKFLNLNSNKLNGSIPSELMNCF-SLQSLILSNNSLTGRIPSEI----RNL-SYLHELDLSLNFISGMTPPQHFKQKHS 463 (818)
Q Consensus 390 ~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 463 (818)
++..+..++ +|++|+|++|.+++..+..+ ..+ ++|+.|+|++|.+++.....+......
T Consensus 158 ---------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 158 ---------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp ---------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ---------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 111222222 44444444444443333222 222 245555555555444221111110000
Q ss_pred cccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCc-------ccccCCCCCCeeeC
Q 003465 464 IRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIP-------LEMGKIIFLEYLDL 536 (818)
Q Consensus 464 ~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~l 536 (818)
....|+.|++++|.+++..+.. +...+..+++|+.|+|++|.+++..+ ..+..++.|+.||+
T Consensus 223 -~~~~L~~L~Ls~N~l~~~~~~~----------l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 223 -IPNHVVSLNLCLNCLHGPSLEN----------LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp -SCTTCCEEECCSSCCCCCCHHH----------HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred -CCCCceEEECcCCCCCcHHHHH----------HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 0013455555555544332211 11134556677777777777544433 34566777778888
Q ss_pred cCCCCcccCC
Q 003465 537 SYNNIPGTVP 546 (818)
Q Consensus 537 s~N~l~g~ip 546 (818)
++|++.+..|
T Consensus 292 ~~N~l~~~~~ 301 (362)
T 3goz_A 292 NGKEIHPSHS 301 (362)
T ss_dssp TSCBCCGGGC
T ss_pred CCCcCCCcch
Confidence 8888766544
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-24 Score=233.21 Aligned_cols=245 Identities=20% Similarity=0.219 Sum_probs=144.4
Q ss_pred CCccccCCCCCcEEEccccccCCcC----CcccCCCCCCCEEEccCCcC---CCCCchhh-------cCCCCCCeeeccC
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPI----PSTLGRLTSLSDLDLSHNSL---FGPIPPTL-------SHLTRLTTLKLFS 326 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l---~~~~~~~l-------~~l~~L~~L~L~~ 326 (818)
++..+..+++|++|+|++|.++... +..+..+++|++|+|++|.+ .+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3444555566666666666665432 23355666666666666432 23334333 4566666666666
Q ss_pred CcCCC----CcCccccCCCCCCEEEcCCCcccccCCcCcC----CC---------CCCCEEeccCCcCC-CCCC---ccc
Q 003465 327 NQING----SIPLGIGNLENLERVDMSSNKLEGPIPLTIG----DL---------TNLIYLDLSLNQLS-GPIP---STF 385 (818)
Q Consensus 327 n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~----~l---------~~L~~L~Ls~n~l~-~~~~---~~~ 385 (818)
|.+.+ .++..+..+++|+.|+|++|.+.+..+..+. .+ ++|++|++++|.++ ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66665 2455556666666666666666433222222 22 56666666666665 2222 234
Q ss_pred CCCCCCCEEEccCCcCcc-----cCCccccCCCCCCEEecccCcCc----ccCCccccCCCCCCEEECcCCcCCccCChh
Q 003465 386 GHLTLLKFLNLNSNKLNG-----SIPSELMNCFSLQSLILSNNSLT----GRIPSEIRNLSYLHELDLSLNFISGMTPPQ 456 (818)
Q Consensus 386 ~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 456 (818)
..+++|+.|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.+++....
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~- 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA- 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH-
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH-
Confidence 455666666666666652 22224555666666666666664 34555556666666666666665543111
Q ss_pred hhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhh--cCCcCCCEEECCCCcCcc----CCcccc-cCCC
Q 003465 457 HFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEI--GNCSGLLNVTLSNNSLDG----TIPLEM-GKII 529 (818)
Q Consensus 457 ~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~ 529 (818)
.+|..+ +.+++|+.|+|++|.+++ .+|..+ .+++
T Consensus 263 ---------------------------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 263 ---------------------------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp ---------------------------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred ---------------------------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 122344 347889999999999988 588777 6789
Q ss_pred CCCeeeCcCCCCcccC
Q 003465 530 FLEYLDLSYNNIPGTV 545 (818)
Q Consensus 530 ~L~~L~ls~N~l~g~i 545 (818)
+|++|++++|++++..
T Consensus 304 ~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 304 DLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTSBSCTTS
T ss_pred CceEEEccCCcCCcch
Confidence 9999999999987544
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-24 Score=232.75 Aligned_cols=244 Identities=18% Similarity=0.220 Sum_probs=130.7
Q ss_pred cCCccccCCCcCceecccCcccccC----CCCCCCCCCCCcEEECcCCCC---CCCCcccc-------CCCCCCCEEEcc
Q 003465 116 NIPSEIGALSKLQILDLSHNNLTGT----IPSKLGNLNNLVELYLSRSNL---NGPIPSTL-------GHLTRLSILDLS 181 (818)
Q Consensus 116 ~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l---~~~~p~~l-------~~l~~L~~L~L~ 181 (818)
.++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+ .+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3556677777888888888877754 334466777888888877543 33444444 567777777777
Q ss_pred CCCCCC----CCccCCCCCCCCcEEEcccCcCCccCCcccc----CC---------CCCCEEEccCCcCCC-CCC---CC
Q 003465 182 SNSLVG----PIPFTLGHLTQLTTLKLFSNQINGCIPLDFG----NL---------RHLKEVDLSGNKLNG-PIA---ST 240 (818)
Q Consensus 182 ~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~l---------~~L~~L~l~~n~l~~-~~~---~~ 240 (818)
+|.+++ .+|..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++. .++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777765 3555666677777777777776533222222 22 556666666665541 111 22
Q ss_pred CCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCC---cCCcccCCCCCCCEEEccCCcCC----CCCchhh
Q 003465 241 IGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG---PIPSTLGRLTSLSDLDLSHNSLF----GPIPPTL 313 (818)
Q Consensus 241 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~l 313 (818)
+..+++|++|++++|.++.. + ..+..+..+++|+.|+|++|.++ ..+|..+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~----------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE----------------------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH----------------------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred HHhCCCcCEEECcCCCCCHh----------------------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 33444555555555544310 1 11223344444444444444443 2334444
Q ss_pred cCCCCCCeeeccCCcCCCC----cCccc--cCCCCCCEEEcCCCcccc----cCCcCc-CCCCCCCEEeccCCcCCCCC
Q 003465 314 SHLTRLTTLKLFSNQINGS----IPLGI--GNLENLERVDMSSNKLEG----PIPLTI-GDLTNLIYLDLSLNQLSGPI 381 (818)
Q Consensus 314 ~~l~~L~~L~L~~n~l~~~----~~~~l--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~Ls~n~l~~~~ 381 (818)
..+++|+.|+|++|.+++. ++..+ +.+++|+.|++++|.+.+ .+|..+ .++++|++|++++|.+++..
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 4455555555555554432 23333 225555555555555554 233333 33555556666665555443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-22 Score=211.96 Aligned_cols=198 Identities=22% Similarity=0.231 Sum_probs=95.3
Q ss_pred CcEEECcCCCCCCCCcccc--CCCCCCCEEEccCCCCCCCCc----cCCCCCCCCcEEEcccCcCCccCCccccCCCCCC
Q 003465 151 LVELYLSRSNLNGPIPSTL--GHLTRLSILDLSSNSLVGPIP----FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK 224 (818)
Q Consensus 151 L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 224 (818)
|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|++++|.+.+..+..|+++++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444444444443 444444444444444443222 1222344444444444444444444444444455
Q ss_pred EEEccCCcCCCC--C--CCCCCCCCcceEEEccCCCCCCCCCc----cccCCCCCcEEEccccccCCcCCcccCCC---C
Q 003465 225 EVDLSGNKLNGP--I--ASTIGDLTNLNSLDLSSKQLSGPLPQ----EIGYLENLVYLSLNVNNLTGPIPSTLGRL---T 293 (818)
Q Consensus 225 ~L~l~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~ 293 (818)
+|++++|++.+. . +..+..+++|++|++++|.++. ++. .+..+++|++|+|++|.+++..|..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 555554443321 0 1122344555555555555542 111 12344555555555555555444444444 4
Q ss_pred CCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCccc
Q 003465 294 SLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354 (818)
Q Consensus 294 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 354 (818)
+|++|++++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 6666666666665 3344332 5666666666666642 22 455566666666666665
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=198.29 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=89.4
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcc-cccCCCCCCCCCCCCcEEECcC-CCCCCCCccccCCCCCCCEEE
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNN-LTGTIPSKLGNLNNLVELYLSR-SNLNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 179 (818)
+|++|++++|.+++..+..|+++++|++|+|++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555556666666666666664 5544444556666666666665 566544444555566666666
Q ss_pred ccCCCCCCCCccCCCCCCCCc---EEEcccC-cCCccCCccccCCCCCC-EEEccCCcCCCCCCCCCCCCCcceEEEccC
Q 003465 180 LSSNSLVGPIPFTLGHLTQLT---TLKLFSN-QINGCIPLDFGNLRHLK-EVDLSGNKLNGPIASTIGDLTNLNSLDLSS 254 (818)
Q Consensus 180 L~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 254 (818)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|+++...+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66655553 333 44444444 5555555 55444444444455555 5555555444222222222 3444444444
Q ss_pred CC-CCCCCCccccCC-CCCcEEEccccccC
Q 003465 255 KQ-LSGPLPQEIGYL-ENLVYLSLNVNNLT 282 (818)
Q Consensus 255 n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~ 282 (818)
|. ++...+..+..+ ++|++|++++|.++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 42 433333333333 34444444444433
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-23 Score=225.64 Aligned_cols=197 Identities=20% Similarity=0.229 Sum_probs=112.9
Q ss_pred CcEEEcCCCCCcccCCccccCC--CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCC-CccccCCCCCCCEEE
Q 003465 103 LESFRIWYSNISGNIPSEIGAL--SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGP-IPSTLGHLTRLSILD 179 (818)
Q Consensus 103 L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 179 (818)
++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455666666554 3345555 6777777777777655444 44567777777777766544 555666777777777
Q ss_pred ccCCCCCCCCccCCCCCCCCcEEEcccC-cCCc-cCCccccCCCCCCEEEccCC-cCCCC-CCCCCCCCC-cceEEEccC
Q 003465 180 LSSNSLVGPIPFTLGHLTQLTTLKLFSN-QING-CIPLDFGNLRHLKEVDLSGN-KLNGP-IASTIGDLT-NLNSLDLSS 254 (818)
Q Consensus 180 L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~L~~ 254 (818)
+++|.+++..+..+..+++|++|++++| .+++ .++..+.++++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777666556666666777777777776 4553 24444556666666666666 55432 233344455 555555555
Q ss_pred C--CCC-CCCCccccCCCCCcEEEccccc-cCCcCCcccCCCCCCCEEEccCC
Q 003465 255 K--QLS-GPLPQEIGYLENLVYLSLNVNN-LTGPIPSTLGRLTSLSDLDLSHN 303 (818)
Q Consensus 255 n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n 303 (818)
| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 5 232 1223334445555555555555 44344444444555555555554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-22 Score=209.35 Aligned_cols=227 Identities=20% Similarity=0.175 Sum_probs=186.4
Q ss_pred CCCCCcEEEcCCCCCcccCCc---cccCCCcCceecccCcccccCCCCCC--CCCCCCcEEECcCCCCCCCCc----ccc
Q 003465 99 CFPNLESFRIWYSNISGNIPS---EIGALSKLQILDLSHNNLTGTIPSKL--GNLNNLVELYLSRSNLNGPIP----STL 169 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l 169 (818)
.-..++.|.+..+.+....-. .+..+++|++|+|++|.+++..|..+ ..+++|++|++++|.+++..+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 344678899988877532111 12345779999999999999999888 899999999999999987655 345
Q ss_pred CCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCcc--C--CccccCCCCCCEEEccCCcCCCCCCC----CC
Q 003465 170 GHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGC--I--PLDFGNLRHLKEVDLSGNKLNGPIAS----TI 241 (818)
Q Consensus 170 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~l 241 (818)
..+++|++|+|++|.+.+..+..++.+++|++|++++|++.+. + +..+..+++|++|++++|+++. ++. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHH
Confidence 6799999999999999988888999999999999999998652 2 2334789999999999999963 222 24
Q ss_pred CCCCcceEEEccCCCCCCCCCccccCC---CCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCC
Q 003465 242 GDLTNLNSLDLSSKQLSGPLPQEIGYL---ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTR 318 (818)
Q Consensus 242 ~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 318 (818)
..+++|++|++++|.+++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|++++|++++. |. +..+++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 678999999999999998878777766 69999999999999 6677664 8999999999999864 33 678899
Q ss_pred CCeeeccCCcCCC
Q 003465 319 LTTLKLFSNQING 331 (818)
Q Consensus 319 L~~L~L~~n~l~~ 331 (818)
|+.|++++|+++.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999874
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=192.45 Aligned_cols=181 Identities=28% Similarity=0.304 Sum_probs=137.2
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
...++++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888888887 5666554 57888888888888777777888888888888888888777777788888888888
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88888876667777788888888888887766666677777777777777777766555677777777777777777766
Q ss_pred CCcccCCCCCCCEEEccCCcCCCC
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGP 308 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~ 308 (818)
.+..+..+++|+.|++++|.+.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 555666677777777777776544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=197.31 Aligned_cols=198 Identities=20% Similarity=0.203 Sum_probs=172.0
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCC-CCCCCccccCCCCCCCEEEccC-CCCCCCCccCCCCCCCCcEE
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN-LNGPIPSTLGHLTRLSILDLSS-NSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L 202 (818)
++|++|+|++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 389999999999997777789999999999999997 8866667899999999999999 99997777789999999999
Q ss_pred EcccCcCCccCCccccCCCCCC---EEEccCC-cCCCCCCCCCCCCCcce-EEEccCCCCCCCCCccccCCCCCcEEEcc
Q 003465 203 KLFSNQINGCIPLDFGNLRHLK---EVDLSGN-KLNGPIASTIGDLTNLN-SLDLSSKQLSGPLPQEIGYLENLVYLSLN 277 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 277 (818)
++++|.+++ +|. |..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.++ .+|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999986 565 88899998 9999999 99877777899999999 9999999998 444443344899999999
Q ss_pred ccc-cCCcCCcccCCC-CCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCc
Q 003465 278 VNN-LTGPIPSTLGRL-TSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQ 328 (818)
Q Consensus 278 ~n~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 328 (818)
+|. ++...+..+..+ ++|+.|++++|.+++..+. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 995 987777788999 9999999999999854433 67899999998763
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.6e-23 Score=219.66 Aligned_cols=224 Identities=21% Similarity=0.234 Sum_probs=114.0
Q ss_pred CCcEEEcccCcCCccCCccccCC--CCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC-CCccccCCCCCcEE
Q 003465 198 QLTTLKLFSNQINGCIPLDFGNL--RHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP-LPQEIGYLENLVYL 274 (818)
Q Consensus 198 ~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L 274 (818)
.++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777776665 3344444 6667777776666654433 34456666666666655433 44445555555555
Q ss_pred EccccccCCcCCcccCCCCCCCEEEccCC-cCCCC-CchhhcCCCCCCeeeccCC-cCCCC-cCccccCCC-CCCEEEcC
Q 003465 275 SLNVNNLTGPIPSTLGRLTSLSDLDLSHN-SLFGP-IPPTLSHLTRLTTLKLFSN-QINGS-IPLGIGNLE-NLERVDMS 349 (818)
Q Consensus 275 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~Ls 349 (818)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 55555555444555555555555555555 34321 3333444555555555555 44432 233344444 45555555
Q ss_pred CCcccccCCcCcCCCCCCCEEeccCCcCC-CCCCcccCCCCCCCEEEccCCc-CcccCCccccCCCCCCEEecccCc-Cc
Q 003465 350 SNKLEGPIPLTIGDLTNLIYLDLSLNQLS-GPIPSTFGHLTLLKFLNLNSNK-LNGSIPSELMNCFSLQSLILSNNS-LT 426 (818)
Q Consensus 350 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~ 426 (818)
+|.+ .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.
T Consensus 204 ~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 204 GYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp SCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred CCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 4421 222 2233334445555555555555 444444455555555555555553 22
Q ss_pred ccCCccccCCCCCCEEECcCC
Q 003465 427 GRIPSEIRNLSYLHELDLSLN 447 (818)
Q Consensus 427 ~~~p~~l~~l~~L~~L~Ls~N 447 (818)
......+.++++|+.|++++|
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhcCCCCCEEeccCc
Confidence 111123445556666666655
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-21 Score=202.44 Aligned_cols=193 Identities=24% Similarity=0.369 Sum_probs=97.7
Q ss_pred CCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCE
Q 003465 98 SCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177 (818)
Q Consensus 98 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 177 (818)
..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCE
Confidence 344555555555555543 22 35555555555555555553322 5555555555555555553 22 3555555555
Q ss_pred EEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCC
Q 003465 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQL 257 (818)
Q Consensus 178 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 257 (818)
|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|++++..+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~------------------- 168 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP------------------- 168 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------------------
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-------------------
Confidence 55555555532 2 14555555555555555543222 4444455555555544443221
Q ss_pred CCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 258 SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|+++
T Consensus 169 -------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 -------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred -------hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 4445555555555555543222 445555555555555555433 2555566666666666554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=203.62 Aligned_cols=212 Identities=26% Similarity=0.398 Sum_probs=127.8
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.++..+.+..+.+++.+ .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 19 ~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L 92 (308)
T 1h6u_A 19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92 (308)
T ss_dssp HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred HHHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEc
Confidence 33444455555555332 23456677777777777763 34 46667777777777777765433 667777777777
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
++|.+++. ..+..+++|++|++++|++++.. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 93 SGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp CSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred cCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence 77776643 24666777777777777766432 26666777777777776664322 55666677777777766643
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCccc
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 354 (818)
.+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.++
T Consensus 167 ~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 22 5666666666666666654322 5555666666666665554332 445555555555555554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=187.55 Aligned_cols=181 Identities=22% Similarity=0.237 Sum_probs=104.0
Q ss_pred CCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCC
Q 003465 63 HCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIP 142 (818)
Q Consensus 63 ~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 142 (818)
.|.|.++.|+..+- ..++. .-.++|++|++++|.+.+..+..|+++++|++|+|++|++++..+
T Consensus 6 ~C~~~~v~c~~~~l-------------~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 6 SCSGTTVECYSQGR-------------TSVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp EEETTEEECCSSCC-------------SSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred EECCCEEEecCCCc-------------cCCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 37899999975331 01121 123467777777777765555556677777777777777765544
Q ss_pred CCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCC
Q 003465 143 SKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRH 222 (818)
Q Consensus 143 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 222 (818)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 55666666777777766666554455566666666666666666544444555666666666666655444444555555
Q ss_pred CCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCcccc
Q 003465 223 LKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIG 266 (818)
Q Consensus 223 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 266 (818)
|++|++++|.+.+ .+++|+.|+++.|.++|.+|.+++
T Consensus 150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 5555555554432 223344444444444444444333
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=194.89 Aligned_cols=199 Identities=20% Similarity=0.161 Sum_probs=101.7
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCc-cCCCCCCCCcE-EEcc
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP-FTLGHLTQLTT-LKLF 205 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~L~ 205 (818)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555555 445444 2456666666666653333455666666666666666544333 23555555543 3444
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccC-CCCCCCCCccccCC-CCCcEEEccccccCC
Q 003465 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSS-KQLSGPLPQEIGYL-ENLVYLSLNVNNLTG 283 (818)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~ 283 (818)
.|+++...|..|.++++|++|++++|++....+..+....++..|++.+ +.+....+..+..+ ..+++|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5666655555666666666666666666554444444555555666543 33443333333333 245556666666553
Q ss_pred cCCcccCCCCCCCEEEccC-CcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 284 PIPSTLGRLTSLSDLDLSH-NSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 284 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
++......++|+.|++++ |.+....+..|..+++|+.|++++|+++
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 333333344555555543 3333222234445555555555555544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=178.79 Aligned_cols=181 Identities=25% Similarity=0.333 Sum_probs=125.9
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+.++++++.+. .+|..+ .++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 44566666555 334333 357888888888887666666778888888888888887655556777888888888888
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCc
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQ 263 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 263 (818)
.+++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 8776655567777788888888777776666667777777777777777776655566777777777777775543
Q ss_pred cccCCCCCcEEEccccccCCcCCcccCCCCC
Q 003465 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTS 294 (818)
Q Consensus 264 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 294 (818)
.+++|++|+++.|++++.+|..++.++.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3456677777777777777666655443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=194.45 Aligned_cols=221 Identities=19% Similarity=0.123 Sum_probs=109.7
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCC-CCCCCCCCCcE-EECcCCCCCCCCccccCCCCCCCEE
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIP-SKLGNLNNLVE-LYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
+++++|+|++|.++...+..|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+++|+++...|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 456666666666665444556666666666666666654443 34566665553 4445566665555566666666666
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEccc-CcCCccCCccccCCC-CCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFS-NQINGCIPLDFGNLR-HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 256 (818)
++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++..
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-------------------- 169 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-------------------- 169 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--------------------
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--------------------
Confidence 6666666554444444455555555543 334433333343332 344455555554422
Q ss_pred CCCCCCccccCCCCCcEEEccc-cccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCc
Q 003465 257 LSGPLPQEIGYLENLVYLSLNV-NNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335 (818)
Q Consensus 257 l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 335 (818)
+.......+|++|++.+ |.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--..+|
T Consensus 170 -----~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 170 -----HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp -----CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-
T ss_pred -----ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-
Confidence 22222333444444442 3333222234455555555555555554332222 2333444433332222333
Q ss_pred cccCCCCCCEEEcCC
Q 003465 336 GIGNLENLERVDMSS 350 (818)
Q Consensus 336 ~l~~l~~L~~L~Ls~ 350 (818)
.+..+++|+.+++.+
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 244555555555544
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-21 Score=203.61 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=76.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC----CCCcchHHHHh------------cccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA----KHPQEILSLFS------------STSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE----~~~~~~l~~~~------------~~~~~~~~ 755 (818)
|+|||||+++++||+|||+||.+.... ..++..+||++||||| ...+...+.|+ ...+....
T Consensus 173 ~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~ 252 (308)
T 4gt4_A 173 TRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS 252 (308)
T ss_dssp GGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC
T ss_pred ccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC
Confidence 899999999999999999999875432 2345678999999999 22222223332 11222222
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+++.....+...+.+.++...+.+++..||+.+|++||+|.||+++|+..
T Consensus 253 ~~~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 253 NQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 2222222112221122445666788899999999999999999999999865
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-21 Score=202.75 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=68.5
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCcc-hHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~--~~~~~ 755 (818)
|+|||||+++++||+|||+||.+.... ...+..+||++||||| ..+++ ..+.|+. .. +....
T Consensus 186 p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~ 265 (329)
T 4aoj_A 186 TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS 265 (329)
T ss_dssp GGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC
T ss_pred HhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC
Confidence 899999999999999999999875432 2345678999999999 22222 2333321 12 22222
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
..++++....+...+.+..+...+.+++..||+.||++||||.||+++|+.+.+
T Consensus 266 ~~~~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 266 NTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence 222222211111112233455667789999999999999999999999998843
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=200.62 Aligned_cols=194 Identities=21% Similarity=0.294 Sum_probs=119.3
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
+|++|+|++|.+++ +|..+. ++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 46777888887776 665553 67888888888887 556 446777888888887775 555 544 77777777
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPL 261 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 261 (818)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++|+.|+|++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777775 444 46667777777776664 343 34566666666666654 333 33 55555555555555 33
Q ss_pred CccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCC
Q 003465 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL 340 (818)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 340 (818)
|. +.. +| ....+.|+.|+|++|.++ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 196 p~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC---------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 32 221 22 011122377777777776 356666667777777777777777666665543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=196.30 Aligned_cols=186 Identities=26% Similarity=0.329 Sum_probs=100.1
Q ss_pred CCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEcc
Q 003465 222 HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLS 301 (818)
Q Consensus 222 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 301 (818)
+|+.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666654 333332 45555555555555 333 234455555555555553 333 322 44444444
Q ss_pred CCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCC
Q 003465 302 HNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPI 381 (818)
Q Consensus 302 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 381 (818)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|.+++ +
T Consensus 129 ~N~l~~-------------------------lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 129 NNQLTM-------------------------LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp SSCCSC-------------------------CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-------------------------CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 444443 332 34445555555555543 222 34455555555555554 3
Q ss_pred CcccCCCCCCCEEEccCCcCcccCCccccCCCCC-------CEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCC
Q 003465 382 PSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSL-------QSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454 (818)
Q Consensus 382 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 454 (818)
|. +. ++|+.|+|++|.++ .+|. +.. +| +.|+|++|.|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 33 33 55666666666655 3444 332 44 77777777777 567766667778888888888777776
Q ss_pred hhhhc
Q 003465 455 PQHFK 459 (818)
Q Consensus 455 ~~~~~ 459 (818)
..+..
T Consensus 248 ~~l~~ 252 (571)
T 3cvr_A 248 ESLSQ 252 (571)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-20 Score=195.59 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=75.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCCcc-hHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~--~~~~~ 755 (818)
|+|||||+++++||+|||+||....... .....+||++||||| ..+++ ..+.|+. .. +....
T Consensus 156 p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~ 235 (299)
T 4asz_A 156 TRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS 235 (299)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred HhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence 8999999999999999999997754322 234567999999999 22222 3333321 11 22222
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+++.....+...+.+..+...+.+++..||+.+|++||+|.||++.|+++.
T Consensus 236 ~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~ 288 (299)
T 4asz_A 236 NNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLA 288 (299)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 22222221111111223345566788999999999999999999999999874
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=172.42 Aligned_cols=158 Identities=23% Similarity=0.247 Sum_probs=99.3
Q ss_pred CCCCCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCccccc
Q 003465 60 HSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTG 139 (818)
Q Consensus 60 ~~~~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 139 (818)
..+.|+|.+|.|...+ +..++.. + .++|++|+|++|.+.+..|..|..+++|++|+|++|.++.
T Consensus 15 ~~~~Cs~~~v~c~~~~-------------l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKR-------------HASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp TTCEEETTEEECTTSC-------------CSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCEEeCCEeEccCCC-------------cCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence 6678999999996432 1111221 1 2567777777777776666667777777777777777765
Q ss_pred CCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccC
Q 003465 140 TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGN 219 (818)
Q Consensus 140 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 219 (818)
..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 44455666677777777777766555555666666666666666666 45555666666666666666666544445555
Q ss_pred CCCCCEEEccCCcCC
Q 003465 220 LRHLKEVDLSGNKLN 234 (818)
Q Consensus 220 l~~L~~L~l~~n~l~ 234 (818)
+++|+.|++++|.+.
T Consensus 158 l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCCEEECTTSCBC
T ss_pred CCCCCEEEeeCCCcc
Confidence 556666666555554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-19 Score=201.43 Aligned_cols=187 Identities=23% Similarity=0.348 Sum_probs=97.7
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
..+.+..+.+.+..+ +..+++|+.|+|++|.+.. +| .+..+++|++|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 333444444443322 4456666666666666653 23 35666666666666666664333 566666666666666
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCc
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQ 263 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 263 (818)
.+.+ ++ .+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..|
T Consensus 98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp CCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 6653 22 455566666666666665542 2355555555555555555532 344455555555555555544333
Q ss_pred cccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC
Q 003465 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 264 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 44445555555555544432 12444444444444444443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=200.72 Aligned_cols=193 Identities=26% Similarity=0.356 Sum_probs=133.6
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.+..+..+++..+.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|++|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 45567778888888875443 5678889999999999874 44 58888999999999998886544 7788888888
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
+|++|.+.+. ..+..+++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.++
T Consensus 93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 8888888752 3577777888888887777652 3466667777777777776643 45566666666666666666
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQING 331 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 331 (818)
+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5443 55666666666666666542 235555555666555555543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=181.05 Aligned_cols=106 Identities=30% Similarity=0.416 Sum_probs=48.2
Q ss_pred ccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCC
Q 003465 217 FGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296 (818)
Q Consensus 217 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 296 (818)
+..+++|++|++++|++++. +.+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+
T Consensus 108 l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence 33444444444444444321 2333444444444444444432 234444555555555555543322 44455555
Q ss_pred EEEccCCcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 297 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 182 ~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 182 NLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred EEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 555555555432 2 2455555555555555544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=181.12 Aligned_cols=170 Identities=28% Similarity=0.348 Sum_probs=77.7
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.+++|++|++++|.+... + .+..+++|++|+|++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 344555555555555432 2 24555555555555555553322 4555555555555555542 22 24555555555
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555554432 2344445555555555544432 234444444444444444443222 444444444444444444
Q ss_pred CCCCccccCCCCCcEEEccccccC
Q 003465 259 GPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 259 ~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
+. + .+..+++|+.|++++|.++
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-h-hhccCCCCCEEECcCCccc
Confidence 21 1 2334444444444444433
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=166.71 Aligned_cols=133 Identities=23% Similarity=0.299 Sum_probs=79.4
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
++|++|++++|.+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45666666666666555556666666666666666666555666666666666666666666444444555666666666
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 233 (818)
++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66666655555555555555555555555554444455555555555555544
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-19 Score=183.65 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=70.7
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC------CCCcc-hHHHHhc---------c--cCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA------KHPQE-ILSLFSS---------T--SDPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE------~~~~~-~l~~~~~---------~--~~~~ 753 (818)
|+|||||+++++||+|||+|+...... ...+..+||++||||| ..+++ ..+.|+. . .+..
T Consensus 160 p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~ 239 (307)
T 3omv_A 160 SNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSH 239 (307)
T ss_dssp SSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred HHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCC
Confidence 899999999999999999999875432 2345678999999999 12333 3344432 1 1211
Q ss_pred cc----ccceecccCC-CcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 754 IT----LTYILDQRIS-PPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 754 ~~----~~~~~d~~l~-~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.. +..++..... +.....+.++...+.+++..||+.+|++||||.||++.|+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 240 INNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp CCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence 11 1111111111 1111123345566778899999999999999999999998763
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=166.11 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=74.2
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+.++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555554 2343332 45555555555555444445555555555555555555444555555555555555555
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 256 (818)
.++...+..|..+++|++|+|++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5554333334445555555555555544444444444444444444444444333334444444444444443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-18 Score=183.31 Aligned_cols=156 Identities=32% Similarity=0.311 Sum_probs=77.3
Q ss_pred cCceecccCcccccCCCCCCC-CCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 126 KLQILDLSHNNLTGTIPSKLG-NLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.+++|+|++|.+++..+..|. ++++|++|+|++|++++..+..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355555555555544444444 5555555555555555444445555555555555555555444444555555555555
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCC---CCCCcceEEEccCCCCCCCCCccccCCCC--CcEEEcccc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTI---GDLTNLNSLDLSSKQLSGPLPQEIGYLEN--LVYLSLNVN 279 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n 279 (818)
++|+++...+..|.++++|++|+|++|+++...+..+ ..+++|+.|+|++|.++...+..+..++. ++.|+|++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 5555555445555555555555555555543322222 33445555555555554333333333333 233444444
Q ss_pred cc
Q 003465 280 NL 281 (818)
Q Consensus 280 ~l 281 (818)
.+
T Consensus 200 ~~ 201 (361)
T 2xot_A 200 PL 201 (361)
T ss_dssp CE
T ss_pred Cc
Confidence 33
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=165.66 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=65.7
Q ss_pred CcEEEcCCCCCcccCC-ccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 103 LESFRIWYSNISGNIP-SEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 103 L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
+++|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4555555555554433 234555555555555555554444455555555555555555554444445555555555555
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 233 (818)
+|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|++++|.+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 5555544444444455555555555554444444444444444444444444
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=165.14 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=75.5
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCC-CCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIP-SKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (818)
+++++++|.++. +|..+. +.+++|+|++|.+++..| ..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 355565555542 344332 234555555555554433 2345555555555555555544444555555555555555
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5555444444555555555555555555444444444445555555444444444444444444444444444433
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=179.61 Aligned_cols=129 Identities=28% Similarity=0.244 Sum_probs=80.8
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccC-CCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEccc
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLG-HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 206 (818)
++++++++.++ .+|..+. ..+++|+|++|.+++..+..+. .+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777776 4555443 3467777777777755555555 667777777777776655555666666666666666
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC
Q 003465 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 66665555556666666666666666655555555555555555555555553
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-17 Score=162.96 Aligned_cols=152 Identities=26% Similarity=0.345 Sum_probs=109.0
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+.++.+++.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++....+..|..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44566666655 4454443 77888888888888777777888888888888888887555566777888888888888
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 877666666777777777777777777 556667777777777777777776555566666777777777766653
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-19 Score=184.47 Aligned_cols=115 Identities=16% Similarity=0.292 Sum_probs=72.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC--CC-------Cc-chHHHHhcc---------c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA--KH-------PQ-EILSLFSST---------S 750 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE--~~-------~~-~~l~~~~~~---------~ 750 (818)
|+|||||+++++||+|||+|+....... .....+||++||||| .. ++ ...+.|+.. .
T Consensus 136 p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~ 215 (303)
T 3hmm_A 136 SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRC 215 (303)
T ss_dssp GGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred cccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCC
Confidence 8999999999999999999998765432 223568999999999 11 11 123334311 0
Q ss_pred C----------CCc-------ccc----ceecccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 D----------PHI-------TLT----YILDQRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~----------~~~-------~~~----~~~d~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
. +.. ... .+.+..+++... ....++...+.+++.+||+.||++||||.||+++|+++
T Consensus 216 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l 295 (303)
T 3hmm_A 216 SIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295 (303)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence 0 000 000 012222222211 11235667788999999999999999999999999987
Q ss_pred C
Q 003465 808 P 808 (818)
Q Consensus 808 ~ 808 (818)
.
T Consensus 296 ~ 296 (303)
T 3hmm_A 296 S 296 (303)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=161.99 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=79.8
Q ss_pred cCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcE
Q 003465 122 GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT 201 (818)
Q Consensus 122 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 201 (818)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45555666666666665 334 4555666666666666543 2234555666666666666665545555555666666
Q ss_pred EEcccCcCCccCCccccCCCCCCEEEccCCc-CCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccc
Q 003465 202 LKLFSNQINGCIPLDFGNLRHLKEVDLSGNK-LNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN 280 (818)
Q Consensus 202 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 280 (818)
|++++|.+++..+..++.+++|++|++++|. ++. ++ .+..+++|+.|++++|.+++. + .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 6666666555455555555555555555555 332 22 344455555555555554431 1 34444444444444444
Q ss_pred c
Q 003465 281 L 281 (818)
Q Consensus 281 l 281 (818)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=162.86 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=132.1
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 176 (818)
...+++|++|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 456778999999999998 555 68999999999999997763 34788999999999999999877788899999999
Q ss_pred EEEccCCCCCCCCccCCCCCCCCcEEEcccCc-CCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCC
Q 003465 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ-INGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSK 255 (818)
Q Consensus 177 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 255 (818)
+|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++. + .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence 99999999998788889999999999999998 65 445 688999999999999999863 3 7888999999999999
Q ss_pred CCCC
Q 003465 256 QLSG 259 (818)
Q Consensus 256 ~l~~ 259 (818)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8764
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-18 Score=183.05 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=74.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~--~~~~~ 755 (818)
|+|||||+++++||+|||+||.+..+.. .++..+||++||||| +..+...+.|+. .. +....
T Consensus 213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~ 292 (353)
T 4ase_A 213 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 292 (353)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred ccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999998755433 235678999999999 222223333421 11 22211
Q ss_pred ccce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+. +........ +..+...+.+++..||+.||++||||.||+++|+++.
T Consensus 293 ~~~~~~~~i~~g~~~~~---p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~ll 346 (353)
T 4ase_A 293 IDEEFCRRLKEGTRMRA---PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 346 (353)
T ss_dssp CSHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCC---CccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 1111 111111111 2334456778889999999999999999999998873
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-17 Score=176.15 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=102.4
Q ss_pred hhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 650 LISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
|.....|| |+||+|.. .+|+.||||++........+.|.+|+
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 155 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 155 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCC
Confidence 33344566 99999995 56999999977655444556688887
Q ss_pred -------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccccccccc
Q 003465 692 -------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYR 731 (818)
Q Consensus 692 -------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~g 731 (818)
|+ |+|||||+++++||+|||+|+.+..+....+..+||+.
T Consensus 156 g~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~ 235 (346)
T 4fih_A 156 GALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPY 235 (346)
T ss_dssp EEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGG
T ss_pred CcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcC
Confidence 22 89999999999999999999988766555667899999
Q ss_pred eeCCC---CCCcc-hHHHHhcc-----------cCCCccccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCC
Q 003465 732 YIAPA---KHPQE-ILSLFSST-----------SDPHITLTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKS 793 (818)
Q Consensus 732 y~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 793 (818)
||||| ..+++ ..+.|+.. .+......+++. ....... ..+......+.++...|++.||++
T Consensus 236 YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~~dli~~~L~~dP~~ 314 (346)
T 4fih_A 236 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL-KNLHKVSPSLKGFLDRLLVRDPAQ 314 (346)
T ss_dssp GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCC-SCGGGSCHHHHHHHHHHSCSSTTT
T ss_pred cCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCC-CccccCCHHHHHHHHHHcCCChhH
Confidence 99999 34444 45566421 111111111111 1111111 111122234556777999999999
Q ss_pred CCChHHHHH
Q 003465 794 VPTMQRVSQ 802 (818)
Q Consensus 794 RP~m~~V~~ 802 (818)
|||+.|+++
T Consensus 315 R~ta~e~l~ 323 (346)
T 4fih_A 315 RATAAELLK 323 (346)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999999875
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-17 Score=168.74 Aligned_cols=169 Identities=24% Similarity=0.324 Sum_probs=91.8
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.+.++..+++++|.+++. + .+..+++|++|++++|.++ .++ .+..+++|++|+|++|.+++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 455566666666666633 2 4566666777777776666 334 46666666666666666664433 6666666666
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++++|++++. +. +.. ++|++|++++|++++. +.+..+++|+.|++++|++++. + .+..+++|++|++++|.++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 6666666542 21 122 5555566655555532 2345555555555555555432 1 3444555555555555554
Q ss_pred CcCCcccCCCCCCCEEEccCCcCC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 33 33444444444444444443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-17 Score=168.58 Aligned_cols=171 Identities=21% Similarity=0.283 Sum_probs=141.2
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.+.++..++++++.+.+.. .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556777788888887543 57889999999999999884 55 68889999999999999985444 8899999999
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++|.+++. |. +.. ++|++|++++|++++. ..+.++++|++|++++|++++. +.+..+++|+.|++++|.++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 9999999863 33 333 8999999999999864 3588999999999999999864 36888999999999999998
Q ss_pred CCCCccccCCCCCcEEEccccccCCc
Q 003465 259 GPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 259 ~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
+. ..+..+++|++|++++|.++..
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 76 6788899999999999998855
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-18 Score=202.50 Aligned_cols=185 Identities=22% Similarity=0.308 Sum_probs=61.8
Q ss_pred HHHHHHHcC-------CCCCCCCCCCCCCCCCCCccceeeCCCCCEEEEEecC--CccccCCCCCCCcCCCCCCcEEEcC
Q 003465 39 LEREALLNT-------GWWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSG--VNGIRGKLDQFNFSCFPNLESFRIW 109 (818)
Q Consensus 39 ~~~~~ll~~-------~~~~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~--~~g~~~~l~~~~l~~l~~L~~L~L~ 109 (818)
.++++|++. +|.....|.. .....+.|.++.++. ++++++++.. +... + ...++.++|+
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~----~------~~~l~~l~Ls 199 (727)
T 4b8c_D 132 CTKQALMEMADTLTDSKTAKKQQPTG-DSTPSGTATNSAVST-PLTPKIELFANGKDEA----N------QALLQHKKLS 199 (727)
T ss_dssp CCCHHHHHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred cchhhhhhhhhhcccccCcccCCCcC-CCCccccCCCceecC-CccceEEeeCCCCCcc----h------hhHhhcCccC
Confidence 355555542 3555556642 345567888887754 5677776621 1110 1 1123344444
Q ss_pred CCCCcc---------cCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 110 YSNISG---------NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 110 ~n~~~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
.+.+.+ ..+..|..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|
T Consensus 200 ~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 200 QYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp ----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEEC
T ss_pred cccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeC
Confidence 443322 22344445555555555555554 34444444555555555555554 44444555555555555
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIAS 239 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 239 (818)
++|.++ .+|..++.+++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+|.
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 555554 34444455555555555555444 3344444444555555554444444333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.2e-20 Score=208.60 Aligned_cols=187 Identities=24% Similarity=0.237 Sum_probs=99.3
Q ss_pred cCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCC-------------CCCCCccccCCCCCCCEEE-ccCCCCCC
Q 003465 122 GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN-------------LNGPIPSTLGHLTRLSILD-LSSNSLVG 187 (818)
Q Consensus 122 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~ 187 (818)
..+++|+.|+|++|.++ .+|..++++++|++|++++|. +.+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 56677778888888776 567777777777777776653 2333444444455555544 333321
Q ss_pred CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccC
Q 003465 188 PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGY 267 (818)
Q Consensus 188 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 267 (818)
.+|+.+.+.+|.++...+ ..|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..++.
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 123333333444332111 135555555555553 333 555555555555555555 44555555
Q ss_pred CCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCC-chhhcCCCCCCeeeccCCcCCC
Q 003465 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPI-PPTLSHLTRLTTLKLFSNQING 331 (818)
Q Consensus 268 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~ 331 (818)
+++|++|+|++|.+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|+|++|++++
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 5555555555555553 33 4555555555555555555443 4455555555555555555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-20 Score=208.72 Aligned_cols=204 Identities=20% Similarity=0.153 Sum_probs=121.1
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcc-------------cccCCCCCCCCCCCCcEEE-CcCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNN-------------LTGTIPSKLGNLNNLVELY-LSRSNLN 162 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~l~~L~~L~-Ls~n~l~ 162 (818)
+..+++|+.|+|++|.+. .+|..++++++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 467889999999999997 789999999999999998875 5667778888999999998 6665432
Q ss_pred CCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCC
Q 003465 163 GPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIG 242 (818)
Q Consensus 163 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 242 (818)
+|+.+.+++|.++...+ ..|++|++++|.+++ +|. ++++++|+.|++++|.++ .+|..++
T Consensus 424 -----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 -----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred -----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 22333334443332111 124455555555543 233 455555555555555554 3444555
Q ss_pred CCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcC-CcccCCCCCCCEEEccCCcCCCCCch---hhcCCCC
Q 003465 243 DLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPI-PSTLGRLTSLSDLDLSHNSLFGPIPP---TLSHLTR 318 (818)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~ 318 (818)
.+++|+.|+|++|.+++ +| .+..+++|++|+|++|.+++.. |..++.+++|+.|+|++|.+++..+. .+..+++
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 55555555555555553 33 4555555555555555555443 55555555555555555555543321 1233555
Q ss_pred CCeee
Q 003465 319 LTTLK 323 (818)
Q Consensus 319 L~~L~ 323 (818)
|+.|+
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 55554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-17 Score=196.47 Aligned_cols=228 Identities=21% Similarity=0.179 Sum_probs=115.2
Q ss_pred CCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEc
Q 003465 269 ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDM 348 (818)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 348 (818)
+.++.|+|.+|.+.. .+. ..|+.++|+.|.+.+ +++..|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 345666666666553 121 224444454444432 233344444 45666777888888888
Q ss_pred CCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCccc
Q 003465 349 SSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428 (818)
Q Consensus 349 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 428 (818)
++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 888887 56666678888888899888888 67788888889999999999988 67888888899999999999887 6
Q ss_pred CCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCC
Q 003465 429 IPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLL 508 (818)
Q Consensus 429 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~ 508 (818)
+|..|.++++|+.|+|++|++++.+|..+..... ....+++++|.++|.+|.. |+
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-----~~~~l~l~~N~l~~~~p~~--------------------l~ 362 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-----TGLIFYLRDNRPEIPLPHE--------------------RR 362 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-----HHHHHHHHHCCCCCCCCCC----------------------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcch-----hhhHHhhccCcccCcCccc--------------------cc
Confidence 7878888999999999999998887766644321 1224677888888777762 33
Q ss_pred EEECCCC--------cCccCCcccccCCCCCCeeeCcCCCCcccCC
Q 003465 509 NVTLSNN--------SLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP 546 (818)
Q Consensus 509 ~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 546 (818)
.|++++| .+.+..+..+.++..+....+++|-+.+...
T Consensus 363 ~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 363 FIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp ---------------------------------------CCCGGGC
T ss_pred eeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 4455555 4445555555666667777777877765433
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-18 Score=179.98 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=99.6
Q ss_pred hhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc--cchhhhhHhhh------------------------------
Q 003465 649 DLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR--SAFFKSFQNEA------------------------------ 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~--~~~~~~f~~E~------------------------------ 691 (818)
+|.....|| |+||+|.. .+|+.||||.+.... ....+.|.+|+
T Consensus 25 ~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy 104 (350)
T 4b9d_A 25 KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDY 104 (350)
T ss_dssp CEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred ceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeC
Confidence 455556677 99999985 579999999765432 22345688887
Q ss_pred -------------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccc
Q 003465 692 -------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||||+++++||+|||+|+.+.......+.
T Consensus 105 ~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~ 184 (350)
T 4b9d_A 105 CEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARA 184 (350)
T ss_dssp CTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHH
T ss_pred CCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccc
Confidence 22 89999999999999999999987543333456
Q ss_pred cccccceeCCC---CCCcc-hHHHHhc-----------ccCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCC
Q 003465 726 IAGTYRYIAPA---KHPQE-ILSLFSS-----------TSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSK 790 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~~-~l~~~~~-----------~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~ 790 (818)
.+||+.||||| ..+++ ..+.|+. ..+......+++...+.+...+.+......+.++...|++.|
T Consensus 185 ~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~d 264 (350)
T 4b9d_A 185 CIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRN 264 (350)
T ss_dssp HHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSS
T ss_pred cCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHccCC
Confidence 78999999999 44444 4555542 122222222222222211110111122234556777999999
Q ss_pred CCCCCChHHHHH
Q 003465 791 PKSVPTMQRVSQ 802 (818)
Q Consensus 791 p~~RP~m~~V~~ 802 (818)
|++||++.|+++
T Consensus 265 P~~R~s~~e~l~ 276 (350)
T 4b9d_A 265 PRDRPSVNSILE 276 (350)
T ss_dssp GGGSCCHHHHHT
T ss_pred hhHCcCHHHHhc
Confidence 999999999875
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=169.33 Aligned_cols=171 Identities=27% Similarity=0.307 Sum_probs=124.3
Q ss_pred CcccchHHHHHHHhhhhhhcccc----CcEEEEEcCCCcEEEEEeccccccc-hhhhhHhhh------------------
Q 003465 635 DGRIAFEEIIRATEDLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSA-FFKSFQNEA------------------ 691 (818)
Q Consensus 635 ~~~~~~~~l~~at~~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~-~~~~f~~E~------------------ 691 (818)
...++++++..++++|.....+| |.||+|...+|+.||||++...... ....|.+|+
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 96 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 96 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence 35689999999999999988888 8999999888999999976544322 223456665
Q ss_pred -----------------------------------------------------c---c-------ccccccCCCCccccc
Q 003465 692 -----------------------------------------------------H---V-------FNNILLNSEFEAFFG 708 (818)
Q Consensus 692 -----------------------------------------------------h---~-------~~NILLd~~~~~ki~ 708 (818)
+ + |+|||+++++.+||+
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~ 176 (326)
T 3uim_A 97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG 176 (326)
T ss_dssp CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEEC
T ss_pred ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEec
Confidence 1 2 899999999999999
Q ss_pred ccccceeccCCCC-CccccccccceeCCC----CCCcch--------------------------------HHHHhcccC
Q 003465 709 NFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEI--------------------------------LSLFSSTSD 751 (818)
Q Consensus 709 DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~--------------------------------l~~~~~~~~ 751 (818)
|||+++....... ......||++|+||| ...+.. ...|.....
T Consensus 177 Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 256 (326)
T 3uim_A 177 DFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLL 256 (326)
T ss_dssp CCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTT
T ss_pred cCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHh
Confidence 9999998754332 344567999999999 111111 222222222
Q ss_pred CCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 752 PHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 752 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.......+.+..+.... ..++...+.+++..|++.+|++||+|.||+++|++..
T Consensus 257 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~ 310 (326)
T 3uim_A 257 KEKKLEALVDVDLQGNY---KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG 310 (326)
T ss_dssp SSCCSTTSSCTTCTTSC---CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred hchhhhhhcChhhcccc---CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence 33334455555555444 5677888999999999999999999999999999773
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-17 Score=173.91 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=102.0
Q ss_pred hhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 650 LISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
|.....|| |.||+|.. .+|+.||||.+........+.|.+|+
T Consensus 153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~g 232 (423)
T 4fie_A 153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 232 (423)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred cEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCC
Confidence 44455677 99999995 56999999977655544556688887
Q ss_pred -------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccccccccc
Q 003465 692 -------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYR 731 (818)
Q Consensus 692 -------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~g 731 (818)
|+ |+|||||.++.+||+|||+|+.+..+....+..+||+.
T Consensus 233 G~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~ 312 (423)
T 4fie_A 233 GALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPY 312 (423)
T ss_dssp EEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTT
T ss_pred CcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcC
Confidence 22 89999999999999999999988666555667899999
Q ss_pred eeCCC---CCCcc-hHHHHhcc---------c--CCCccccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCC
Q 003465 732 YIAPA---KHPQE-ILSLFSST---------S--DPHITLTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKS 793 (818)
Q Consensus 732 y~aPE---~~~~~-~l~~~~~~---------~--~~~~~~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 793 (818)
||||| ..+++ ..+.|+.+ . +......+++. ....... .........+.++...|++.||++
T Consensus 313 YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~~dli~~~L~~dP~~ 391 (423)
T 4fie_A 313 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL-KNLHKVSPSLKGFLDRLLVRDPAQ 391 (423)
T ss_dssp TCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC-SCTTSSCHHHHHHHHHHSCSSTTT
T ss_pred cCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCC-cccccCCHHHHHHHHHHcCCChhH
Confidence 99999 34444 45556422 1 11111111111 1111110 011111234456777999999999
Q ss_pred CCChHHHHH
Q 003465 794 VPTMQRVSQ 802 (818)
Q Consensus 794 RP~m~~V~~ 802 (818)
||++.|+++
T Consensus 392 R~ta~ell~ 400 (423)
T 4fie_A 392 RATAAELLK 400 (423)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999999876
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-17 Score=172.58 Aligned_cols=169 Identities=21% Similarity=0.242 Sum_probs=118.2
Q ss_pred ccchHHHHHHHhhhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh---------------------
Q 003465 637 RIAFEEIIRATEDLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA--------------------- 691 (818)
Q Consensus 637 ~~~~~~l~~at~~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------- 691 (818)
++++.++.+++++|.....+| |.||+|...+|..||||..........+.|.+|+
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 107 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence 345555566778888888888 8999999888999999976655544556677776
Q ss_pred ------------------------------------------------------cc---ccccccCCCCcccccccccce
Q 003465 692 ------------------------------------------------------HV---FNNILLNSEFEAFFGNFGVAR 714 (818)
Q Consensus 692 ------------------------------------------------------h~---~~NILLd~~~~~ki~DFGla~ 714 (818)
|+ |+||++|+++.+||+|||+++
T Consensus 108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~ 187 (321)
T 2qkw_B 108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISK 187 (321)
T ss_dssp TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCE
T ss_pred CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccccc
Confidence 22 899999999999999999998
Q ss_pred eccCCC--CCccccccccceeCCC----CCCcchHHHHhc---------c--cC-------------------CCccccc
Q 003465 715 LLNSDS--SNRTLIAGTYRYIAPA----KHPQEILSLFSS---------T--SD-------------------PHITLTY 758 (818)
Q Consensus 715 ~~~~~~--~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~--~~-------------------~~~~~~~ 758 (818)
...... .......||.+|+||| ...+...+.|+. . .+ ....+.+
T Consensus 188 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (321)
T 2qkw_B 188 KGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQ 267 (321)
T ss_dssp ECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCS
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHH
Confidence 764322 2234567999999999 111112222321 1 01 0111233
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
++++.+.... ..+....+.+++..|++.+|++||+|.||++.|+.+.
T Consensus 268 ~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l 314 (321)
T 2qkw_B 268 IVDPNLADKI---RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYAL 314 (321)
T ss_dssp SSSSSCTTCS---CHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hcChhhcccc---CHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 3444443333 5667788889999999999999999999999999873
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-16 Score=171.30 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=48.4
Q ss_pred CCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCC-EEEccCCcCcccCCccccCCCCCCEE
Q 003465 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLK-FLNLNSNKLNGSIPSELMNCFSLQSL 418 (818)
Q Consensus 340 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L 418 (818)
+++|+.|++++|++.......|.++++|+.|++.+| +....+..|.++++|+ .+++.+ .++...+..|.+|++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 344444444444444333344444444444444444 3333344455555555 555544 4443334445555555555
Q ss_pred ecccCcCcccCCccccCCCCCCEEE
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELD 443 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~ 443 (818)
++++|.++...+..|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5555555544444555555555543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.7e-16 Score=146.42 Aligned_cols=133 Identities=23% Similarity=0.231 Sum_probs=97.6
Q ss_pred CCCCcEEEcCCCCCc-ccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 100 FPNLESFRIWYSNIS-GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 100 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.++|++|++++|.+. +.+|..+..+++|++|+|++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 366788888888877 67777778888888888888887754 667778888888888888876677777777888888
Q ss_pred EccCCCCCCCC-ccCCCCCCCCcEEEcccCcCCccCC---ccccCCCCCCEEEccCCcCC
Q 003465 179 DLSSNSLVGPI-PFTLGHLTQLTTLKLFSNQINGCIP---LDFGNLRHLKEVDLSGNKLN 234 (818)
Q Consensus 179 ~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 234 (818)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888777532 2567777777777777777775444 35667777777777777664
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-16 Score=167.76 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=69.6
Q ss_pred ccccccCCCC-cccccccccceeccCCCC-----CccccccccceeCCC---CCCcc-hHHHHhc-----------ccCC
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSS-----NRTLIAGTYRYIAPA---KHPQE-ILSLFSS-----------TSDP 752 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~-----~~~~~~gt~gy~aPE---~~~~~-~l~~~~~-----------~~~~ 752 (818)
|+|||||.++ ++||+|||+|+.+..+.. ....++||+.||||| ..+++ ..+.|+. ..+.
T Consensus 178 p~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~ 257 (336)
T 4g3f_A 178 ADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWT 257 (336)
T ss_dssp GGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSST
T ss_pred HHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCC
Confidence 9999999997 699999999998865422 123578999999999 34444 4455542 1122
Q ss_pred CccccceecccCCCcC--ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 753 HITLTYILDQRISPPK--KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 753 ~~~~~~~~d~~l~~~~--~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.....+++........ ...+......+.++...|++.||++|||+.|+++.|..+
T Consensus 258 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~ 314 (336)
T 4g3f_A 258 QYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKA 314 (336)
T ss_dssp TTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence 2122222111111110 011222334556677899999999999999999887654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-16 Score=170.06 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=69.3
Q ss_pred CCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCC-EEeccCCcCCCCCCcccCCCCCCCEE
Q 003465 316 LTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLI-YLDLSLNQLSGPIPSTFGHLTLLKFL 394 (818)
Q Consensus 316 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L 394 (818)
+++|+.|+|++|+++...+..|.++++|+.|++.+| +.......|.++++|+ .+++.+ .++...+..|.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566777777766666544455667777777777766 5555566677777777 777766 5555556677777777777
Q ss_pred EccCCcCcccCCccccCCCCCCEEe
Q 003465 395 NLNSNKLNGSIPSELMNCFSLQSLI 419 (818)
Q Consensus 395 ~L~~N~l~~~~~~~~~~l~~L~~L~ 419 (818)
++++|.++...+..|.++++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7777777766666777777777765
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=146.46 Aligned_cols=109 Identities=30% Similarity=0.406 Sum_probs=52.5
Q ss_pred cCceecccCcccccCCCC-CCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 126 KLQILDLSHNNLTGTIPS-KLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
+|++|+|++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 445555555555433332 2444555555555555555444444555555555555555554444444444445555555
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCC
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 234 (818)
++|++++..|..|..+++|++|++++|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555544444444444444444444444443
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-16 Score=163.40 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=88.1
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc---cchhhhhHhhh----------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR---SAFFKSFQNEA---------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~---~~~~~~f~~E~---------------------------- 691 (818)
++|.....|| |+||+|.. .+|+.||||.+.... ....+.|.+|+
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 3555556677 89999995 569999999765432 12234578887
Q ss_pred ------------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCcccc
Q 003465 692 ------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLI 726 (818)
Q Consensus 692 ------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~ 726 (818)
|+ |+|||+|+++++||+|||+|+...... ..+..
T Consensus 93 Ey~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~-~~~~~ 171 (275)
T 3hyh_A 93 EYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN-FLKTS 171 (275)
T ss_dssp ECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC-------------
T ss_pred eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC-ccCCe
Confidence 22 899999999999999999999765432 33457
Q ss_pred ccccceeCCC---CCCc-c-hHHHHhcc-----------cCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCC
Q 003465 727 AGTYRYIAPA---KHPQ-E-ILSLFSST-----------SDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSK 790 (818)
Q Consensus 727 ~gt~gy~aPE---~~~~-~-~l~~~~~~-----------~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~ 790 (818)
+||+.||||| ..++ + ..+.|+.. .+......+++.....+.. ..+......+.++...|++.|
T Consensus 172 ~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~d 250 (275)
T 3hyh_A 172 CGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVY-TLPKFLSPGAAGLIKRMLIVN 250 (275)
T ss_dssp ---CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC-CCCTTSCHHHHHHHHHHSCSS
T ss_pred eECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCC-CCCCCCCHHHHHHHHHHccCC
Confidence 8999999999 3332 2 45566421 1222222222111111110 001111233456777999999
Q ss_pred CCCCCChHHHHH
Q 003465 791 PKSVPTMQRVSQ 802 (818)
Q Consensus 791 p~~RP~m~~V~~ 802 (818)
|++|||+.|+++
T Consensus 251 P~~R~s~~eil~ 262 (275)
T 3hyh_A 251 PLNRISIHEIMQ 262 (275)
T ss_dssp GGGSCCHHHHHH
T ss_pred hhHCcCHHHHHc
Confidence 999999999986
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-16 Score=166.79 Aligned_cols=152 Identities=18% Similarity=0.112 Sum_probs=99.0
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc---cchhhhhHhhh----------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR---SAFFKSFQNEA---------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~---~~~~~~f~~E~---------------------------- 691 (818)
++|.....|| |+||+|.. .+|+.||||.+.... ....+.+.+|+
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 3466666777 89999985 679999999765432 12335577777
Q ss_pred -------------------------------------------cc---ccccccCCCCcccccccccceeccCCC--CCc
Q 003465 692 -------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS--SNR 723 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~--~~~ 723 (818)
|+ |+|||||+++.+||+|||+|+.+..+. ...
T Consensus 112 Ey~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~ 191 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA 191 (311)
T ss_dssp CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCB
T ss_pred ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccc
Confidence 22 899999999999999999999886443 234
Q ss_pred cccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccceecccCCCcCccchHHHHHHHHHHHHhccC
Q 003465 724 TLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQ 788 (818)
Q Consensus 724 ~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~ 788 (818)
...+||+.||||| ..+++ ..+.|+.. .+...+..+++...+.... ..+......+.++...|++
T Consensus 192 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~-~~p~~~s~~~~dli~~lL~ 270 (311)
T 4aw0_A 192 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEY-DFPEKFFPKARDLVEKLLV 270 (311)
T ss_dssp CCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC-CCCTTCCHHHHHHHHHHSC
T ss_pred cCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC-CCCcccCHHHHHHHHHHcc
Confidence 5689999999999 33444 45556421 2222222222222111111 0011112234567779999
Q ss_pred CCCCCCCChHHH
Q 003465 789 SKPKSVPTMQRV 800 (818)
Q Consensus 789 ~~p~~RP~m~~V 800 (818)
.||++||++.|+
T Consensus 271 ~dp~~R~t~~e~ 282 (311)
T 4aw0_A 271 LDATKRLGCEEM 282 (311)
T ss_dssp SSGGGSTTSGGG
T ss_pred CCHhHCcChHHH
Confidence 999999999886
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=145.45 Aligned_cols=130 Identities=25% Similarity=0.358 Sum_probs=96.3
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCcc-ccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEccc
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPS-TLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 206 (818)
+++++++|.++ .+|..+.. +|++|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67788888776 56665543 788888888888755553 377788888888888888877777777888888888888
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 888777776777777777777777777776677777777777777777766643
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-16 Score=164.61 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=62.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC------------CccccccccceeCCC---CCCcc-hHHHHhccc------C
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS------------NRTLIAGTYRYIAPA---KHPQE-ILSLFSSTS------D 751 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~------------~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~~------~ 751 (818)
|+||||+.++++||+|||+|+.+..+.. ..+..+||+.||||| ..+++ ..+.|+... .
T Consensus 146 p~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~ 225 (299)
T 4g31_A 146 PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY 225 (299)
T ss_dssp GGGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS
T ss_pred HHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc
Confidence 8999999999999999999998754321 124568999999999 33333 445554221 1
Q ss_pred CCccc---cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH--HHccC
Q 003465 752 PHITL---TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ--EFLKF 807 (818)
Q Consensus 752 ~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~--~L~~~ 807 (818)
+.... ...+.........+...+.......+...|++.||++||++.|+++ .++++
T Consensus 226 Pf~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~ 286 (299)
T 4g31_A 226 PFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDL 286 (299)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGCCC
T ss_pred CCCCccHHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCCC
Confidence 11100 0111111111111112223334556888999999999999999986 45544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=144.69 Aligned_cols=133 Identities=26% Similarity=0.255 Sum_probs=86.4
Q ss_pred CCcCceecccCcccc-cCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 124 LSKLQILDLSHNNLT-GTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 124 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.++|++|+|++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367788888888776 56677777777777777777777754 567777777777777777776566555566777777
Q ss_pred EcccCcCCccC-CccccCCCCCCEEEccCCcCCCCCC---CCCCCCCcceEEEccCCCCC
Q 003465 203 KLFSNQINGCI-PLDFGNLRHLKEVDLSGNKLNGPIA---STIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 203 ~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777666432 1455666666666666666654332 24455555555555555544
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-16 Score=159.84 Aligned_cols=107 Identities=16% Similarity=0.244 Sum_probs=65.5
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCC--CCCcc-hHHHHhc---------ccCC--Cc-ccc
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--KHPQE-ILSLFSS---------TSDP--HI-TLT 757 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~~~~~-~l~~~~~---------~~~~--~~-~~~ 757 (818)
|+|||||. ++++||+|||+|+.... ...+..+||++||||| +.+++ ..+.|+. ...+ +. ...
T Consensus 159 p~NILl~~~~g~vKl~DFGla~~~~~--~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~ 236 (290)
T 3fpq_A 159 CDNIFITGPTGSVKIGDLGLATLKRA--SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAA 236 (290)
T ss_dssp GGGEEESSTTSCEEECCTTGGGGCCT--TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH
T ss_pred hhheeEECCCCCEEEEeCcCCEeCCC--CccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHH
Confidence 89999985 79999999999986432 3345678999999999 22333 4445542 1122 11 111
Q ss_pred ceecccCCCcCc-cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKK-QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~-~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+......+... ..+......+.+++..|++.||++|||+.|+++
T Consensus 237 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 237 QIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 111111111110 011112234567788999999999999999875
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-15 Score=143.03 Aligned_cols=128 Identities=23% Similarity=0.258 Sum_probs=94.5
Q ss_pred CCCCcEEEcCCCCCc-ccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 100 FPNLESFRIWYSNIS-GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 100 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456788888888877 67777778888888888888887754 667778888888888888876677777777888888
Q ss_pred EccCCCCCCC-CccCCCCCCCCcEEEcccCcCCccCC---ccccCCCCCCEEEcc
Q 003465 179 DLSSNSLVGP-IPFTLGHLTQLTTLKLFSNQINGCIP---LDFGNLRHLKEVDLS 229 (818)
Q Consensus 179 ~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~ 229 (818)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888877753 23667777777777777777775544 356677777777664
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-16 Score=162.64 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=62.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||+|+++++||+|||+|+.........+..+||+.||||| ..+++ ..+.|+.. .+......+
T Consensus 154 p~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~ 233 (304)
T 3ubd_A 154 PENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE 233 (304)
T ss_dssp GGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH
Confidence 8999999999999999999997655544556688999999999 33433 45556421 222222222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
++........ ..+......+.++...|++.||++||+.
T Consensus 234 ~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 234 TMTMILKAKL-GMPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp HHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred HHHHHHcCCC-CCCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 2211111110 0011122345567779999999999984
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=138.63 Aligned_cols=111 Identities=22% Similarity=0.253 Sum_probs=71.9
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
++|++|++++|.+.+..+..|+.+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 56777777777776555556667777777777777776555555666677777777777766555555666666666666
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCc
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQING 211 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 211 (818)
++|.+++..+..+..+++|++|++++|.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666665444445566666666666666554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-15 Score=140.68 Aligned_cols=129 Identities=23% Similarity=0.245 Sum_probs=88.8
Q ss_pred CCCcCceecccCcccc-cCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcE
Q 003465 123 ALSKLQILDLSHNNLT-GTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT 201 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 201 (818)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467888888888887 66777778888888888888887754 56777777888888777777666666666777777
Q ss_pred EEcccCcCCcc-CCccccCCCCCCEEEccCCcCCCCCC---CCCCCCCcceEEEcc
Q 003465 202 LKLFSNQINGC-IPLDFGNLRHLKEVDLSGNKLNGPIA---STIGDLTNLNSLDLS 253 (818)
Q Consensus 202 L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~ 253 (818)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777653 23556666667777776666654333 245555555555543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=139.71 Aligned_cols=106 Identities=27% Similarity=0.327 Sum_probs=43.8
Q ss_pred cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcc
Q 003465 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 205 (818)
+|++|+|++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3444444444443 333344444444444444444443333334444444444444444443333334444444444444
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCc
Q 003465 206 SNQINGCIPLDFGNLRHLKEVDLSGNK 232 (818)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~l~~n~ 232 (818)
+|.++...+..|..+++|+.|++++|.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCC
Confidence 444443333333334444444444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=139.08 Aligned_cols=127 Identities=26% Similarity=0.448 Sum_probs=96.3
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccC
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 207 (818)
+++++++|.++ .+|..+. ++|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56778888877 5665543 57888888888887 66778888888888888888888777777888888888888888
Q ss_pred cCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 208 QINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 208 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++..+..|.++++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888777777777777888877777777655556666777777777776654
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.6e-15 Score=155.21 Aligned_cols=169 Identities=21% Similarity=0.267 Sum_probs=116.0
Q ss_pred cccchHHHHHHHhhhhhh------cccc----CcEEEEEcCCCcEEEEEeccccc----cchhhhhHhhh----------
Q 003465 636 GRIAFEEIIRATEDLISD------IALE----LDVTAAFTKHGCLVAEYGSEQGR----SAFFKSFQNEA---------- 691 (818)
Q Consensus 636 ~~~~~~~l~~at~~f~~~------~~ig----g~vy~~~~~~g~~vAvK~~~~~~----~~~~~~f~~E~---------- 691 (818)
..|+++++.++|++|++. ..+| |.||+|.. ++..||||...... ....+.|.+|+
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999987 5677 89999996 68899999654321 22234566666
Q ss_pred ----------------------------------------------------------------cc---ccccccCCCCc
Q 003465 692 ----------------------------------------------------------------HV---FNNILLNSEFE 704 (818)
Q Consensus 692 ----------------------------------------------------------------h~---~~NILLd~~~~ 704 (818)
|+ |+||++|+++.
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~ 171 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFT 171 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCC
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCc
Confidence 22 89999999999
Q ss_pred ccccccccceeccCCCC--CccccccccceeCCC--CC-CcchHHHHhc---------ccCC--Ccc-------------
Q 003465 705 AFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA--KH-PQEILSLFSS---------TSDP--HIT------------- 755 (818)
Q Consensus 705 ~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE--~~-~~~~l~~~~~---------~~~~--~~~------------- 755 (818)
+||+|||+++....... ......||.+|+||| +. .+...+.|+. ...+ ...
T Consensus 172 ~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~ 251 (307)
T 2nru_A 172 AKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIE 251 (307)
T ss_dssp EEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHH
T ss_pred EEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhh
Confidence 99999999997754322 234567999999999 11 1112223321 1111 100
Q ss_pred -----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 756 -----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 756 -----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
+.+.+++.+. ..+......+.+++..|++.+|++||++.+|++.|+++..
T Consensus 252 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 252 DEEKTIEDYIDKKMN----DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp TTSCCHHHHSCSSCS----CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred hhhhhhhhhcccccc----ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 1111222221 2245566778889999999999999999999999998753
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-13 Score=147.48 Aligned_cols=269 Identities=11% Similarity=0.073 Sum_probs=124.7
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
..++.+.+.+ .++..-...|.++ +|+.+.+..+ ++.....+|.+ .+|+.+.+.. .++......|.++++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4444444433 2332333444443 4555555443 33233334444 2455555543 333333344555555555555
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
..|.++......|. ..+|+.+.+..+ ++.....+|.++++|+.+++..+ ++......|.. .+|+.+.+. +.++..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 55555533333333 355555555422 33333444555555555555442 22222233333 345555552 223323
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCC
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 364 (818)
....|.++++|+.+++.+|.+.. +......+..|.+|++|+.+++.+ .+.......|.++
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c 322 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN 322 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC
T ss_pred ChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC
Confidence 33444445555555554443320 000012233455555555555552 3444444555566
Q ss_pred CCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCC-CCCEEecccCcC
Q 003465 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF-SLQSLILSNNSL 425 (818)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l 425 (818)
++|+.+.|..+ ++......|.++ +|+.+++++|.+....+..|..++ +++.|.+..+.+
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 66666666433 443444556666 666666666665544444455553 566666665543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-14 Score=134.64 Aligned_cols=109 Identities=27% Similarity=0.297 Sum_probs=48.1
Q ss_pred CCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEcc
Q 003465 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLS 229 (818)
Q Consensus 150 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 229 (818)
+|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333334444444444444444443333334444444444444444443333334444444444444
Q ss_pred CCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 230 GNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 230 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
+|++++..+..+..+++|+.|++++|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 44444333333344444444444444444
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-13 Score=147.08 Aligned_cols=267 Identities=9% Similarity=0.065 Sum_probs=178.1
Q ss_pred CCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCE
Q 003465 98 SCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177 (818)
Q Consensus 98 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 177 (818)
..+..++.+.+.. .++..-..+|.++ +|+.++|..+ ++..-..+|.++ +|+.+.+.. .++...+.+|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3446677777764 4554455677775 7999998776 665556678774 699999986 666566678999999999
Q ss_pred EEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCC
Q 003465 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQL 257 (818)
Q Consensus 178 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 257 (818)
+++.+|.++......|. ..+|+.+.+..+ ++......|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 99999888855555555 689999999854 77677778999999999999875 55455667777 789999994 456
Q ss_pred CCCCCccccCCCCCcEEEccccccC-----CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCC
Q 003465 258 SGPLPQEIGYLENLVYLSLNVNNLT-----GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGS 332 (818)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 332 (818)
+......|..+++|+.+++.+|.+. ...+..|.++++|+.++|.+ .+....
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~----------------------- 315 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG----------------------- 315 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC-----------------------
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh-----------------------
Confidence 6566678889999999999887765 22334455555555555542 233222
Q ss_pred cCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCC-CCCEEEccCCcC
Q 003465 333 IPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLT-LLKFLNLNSNKL 401 (818)
Q Consensus 333 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l 401 (818)
...|.+|++|+.+.+..| +.......|.++ +|+.+++++|.+.......|.+++ +++.|++..+.+
T Consensus 316 -~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 316 -QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 334455555555555433 333344455555 666666666655544455555553 566777666543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-13 Score=146.50 Aligned_cols=330 Identities=13% Similarity=0.039 Sum_probs=186.5
Q ss_pred CCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCC
Q 003465 93 DQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHL 172 (818)
Q Consensus 93 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 172 (818)
...+|.++.+|+.+.+.. .++..-..+|.++++|+.++|..+ ++..-...|.++.+|+.+.+..+ +......+|.++
T Consensus 63 g~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 445588888999998874 466555667888889999988755 55444567888888887777544 332334456655
Q ss_pred CCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEc
Q 003465 173 TRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDL 252 (818)
Q Consensus 173 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 252 (818)
..++........ ......|.++++|+.+.+..+. .......|.++.+|+.+.+..+ ++......+.++..|+.+.+
T Consensus 140 ~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 140 DFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccCcccc--ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 444333332222 1223467777788888776543 3344556777777777777655 33344556667777776666
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCC
Q 003465 253 SSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGS 332 (818)
Q Consensus 253 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 332 (818)
..+... +.+......+|+.+.+..+ ++......+..+..|+.+.+..+... .....|..+..++.+....+.+.
T Consensus 216 ~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 216 PNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp CTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--
T ss_pred CCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--
Confidence 554322 1222333456666666433 22233345556666776666554332 33345555666666655544322
Q ss_pred cCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCC
Q 003465 333 IPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNC 412 (818)
Q Consensus 333 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 412 (818)
...+..+.+|+.+.+..+ +.......|.++.+|+.++|.++ ++......|.++.+|+.+.+..+ ++..-...|.+|
T Consensus 290 -~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 290 -EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp -TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred -cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 123455666666666543 33334455666666666666433 44334455666666666666544 443344456666
Q ss_pred CCCCEEecccCcCcccCCccccCCCCCCE
Q 003465 413 FSLQSLILSNNSLTGRIPSEIRNLSYLHE 441 (818)
Q Consensus 413 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 441 (818)
.+|+.+++..+- . .+...|.++++|+.
T Consensus 366 ~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 366 INLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred CCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 666666665432 1 12234555555443
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-14 Score=154.34 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=107.9
Q ss_pred cccchHHHHHHHhh----------hhhhcccc----CcEEEEEcC-CCcEEEEEeccccccchhhhhHhhh---------
Q 003465 636 GRIAFEEIIRATED----------LISDIALE----LDVTAAFTK-HGCLVAEYGSEQGRSAFFKSFQNEA--------- 691 (818)
Q Consensus 636 ~~~~~~~l~~at~~----------f~~~~~ig----g~vy~~~~~-~g~~vAvK~~~~~~~~~~~~f~~E~--------- 691 (818)
+.++++++.++++. |.....|| |.||+|... +|+.||||.+........+.|.+|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 46899999999875 44445666 899999964 7999999976655444455577776
Q ss_pred -------------------------------------------------------------cc---ccccccCCCCcccc
Q 003465 692 -------------------------------------------------------------HV---FNNILLNSEFEAFF 707 (818)
Q Consensus 692 -------------------------------------------------------------h~---~~NILLd~~~~~ki 707 (818)
|+ |+|||++.++.+||
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl 182 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKL 182 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEE
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEE
Confidence 22 89999999999999
Q ss_pred cccccceeccCCCCCccccccccceeCCC---CCCc-chHHHHhcc---------cCC--Cccccceec---ccCCCcCc
Q 003465 708 GNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-EILSLFSST---------SDP--HITLTYILD---QRISPPKK 769 (818)
Q Consensus 708 ~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~~---------~~~--~~~~~~~~d---~~l~~~~~ 769 (818)
+|||+++............+||++|+||| ..+. ...+.|+.. ..+ .....+.+. .......
T Consensus 183 ~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~- 261 (321)
T 2c30_A 183 SDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKL- 261 (321)
T ss_dssp CCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCC-
T ss_pred eeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCc-
Confidence 99999998765544455678999999999 2222 233334311 111 111001100 0000000
Q ss_pred cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 770 QKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 770 ~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.........+.+++..|++.+|++||++.||++.
T Consensus 262 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 262 KNSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred CccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0011122345667779999999999999999863
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-14 Score=134.73 Aligned_cols=131 Identities=21% Similarity=0.217 Sum_probs=90.7
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCC-cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALS-KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 175 (818)
+..+++|++|++++|.+.. +|. +..+. +|++|+|++|.+++. ..|..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 5667778888888888774 343 44444 788888888888754 567778888888888888775444445777788
Q ss_pred CEEEccCCCCCCCCcc--CCCCCCCCcEEEcccCcCCccCCcc----ccCCCCCCEEEccCCcC
Q 003465 176 SILDLSSNSLVGPIPF--TLGHLTQLTTLKLFSNQINGCIPLD----FGNLRHLKEVDLSGNKL 233 (818)
Q Consensus 176 ~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l 233 (818)
++|++++|.++ .+|. .+..+++|++|++++|.++. +|.. +..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888775 3444 56677777777777777763 3442 66667777777766654
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-14 Score=152.72 Aligned_cols=54 Identities=33% Similarity=0.409 Sum_probs=40.1
Q ss_pred ccccccCCCCcccccccccceeccCC----CCCccccccccceeCCC----CCCcc-hHHHHh
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD----SSNRTLIAGTYRYIAPA----KHPQE-ILSLFS 747 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~----~~~~~~~~gt~gy~aPE----~~~~~-~l~~~~ 747 (818)
|+|||+|.++.+||+|||+|+.+... ....+..+||+.||||| ...++ .++.|+
T Consensus 186 P~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWS 248 (398)
T 4b99_A 186 PSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWS 248 (398)
T ss_dssp GGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHH
T ss_pred ccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheeh
Confidence 89999999999999999999977433 22345678999999999 22222 456665
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-14 Score=159.08 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=105.0
Q ss_pred hhhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh--------------------------------
Q 003465 648 EDLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA-------------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~-------------------------------- 691 (818)
++|.....+| |.||+|...++..||||.+.... ...+.|.+|+
T Consensus 188 ~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~~~ 266 (454)
T 1qcf_A 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAK 266 (454)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCCTT
T ss_pred HHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeecCC
Confidence 3455556676 89999998888999999776543 2345677776
Q ss_pred ----------------------------------------cc---ccccccCCCCcccccccccceeccCCC-CCccccc
Q 003465 692 ----------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIA 727 (818)
Q Consensus 692 ----------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~ 727 (818)
|+ |+|||+++++.+||+|||+++...... .......
T Consensus 267 g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~ 346 (454)
T 1qcf_A 267 GSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAK 346 (454)
T ss_dssp CBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSS
T ss_pred CcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCc
Confidence 22 899999999999999999999764321 1223455
Q ss_pred cccceeCCC----CCCcchHHHHhc----------ccCC--Ccccccee---cccCCCcCccchHHHHHHHHHHHHhccC
Q 003465 728 GTYRYIAPA----KHPQEILSLFSS----------TSDP--HITLTYIL---DQRISPPKKQKIVQDIALASIVALACLQ 788 (818)
Q Consensus 728 gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~~~~~---d~~l~~~~~~~~~~~~~~~~~la~~C~~ 788 (818)
+|++|+||| ...+...+.|+. ...+ .....+++ ....... .+..+...+.+++..|++
T Consensus 347 ~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~---~~~~~~~~l~~li~~cl~ 423 (454)
T 1qcf_A 347 FPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMP---RPENCPEELYNIMMRCWK 423 (454)
T ss_dssp SCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCC---CCTTSCHHHHHHHHHHTC
T ss_pred ccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHcc
Confidence 788999999 222222333321 1111 11111111 1111111 123344567788899999
Q ss_pred CCCCCCCChHHHHHHHccCCCcC
Q 003465 789 SKPKSVPTMQRVSQEFLKFPYLD 811 (818)
Q Consensus 789 ~~p~~RP~m~~V~~~L~~~~~~~ 811 (818)
.+|++||+|.+|++.|+.+....
T Consensus 424 ~dp~~RPt~~~i~~~L~~~~~~~ 446 (454)
T 1qcf_A 424 NRPEERPTFEYIQSVLDDFYTAT 446 (454)
T ss_dssp SSGGGSCCHHHHHHHHHTSSSSS
T ss_pred CChhHCcCHHHHHHHHHHHHhcc
Confidence 99999999999999999985433
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-14 Score=152.74 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=68.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~ 754 (818)
|+|||+|.++.+||+|||+++....... ......||++|+||| ...+...+.|+. ...+. .
T Consensus 179 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~ 258 (325)
T 3kul_A 179 ARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM 258 (325)
T ss_dssp GGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred cceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 8999999999999999999998754422 223456788999999 211112223321 11111 1
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
...++.+........+.+......+.+++..|++.+|++||+|.+|++.|+.+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~ 313 (325)
T 3kul_A 259 TNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIR 313 (325)
T ss_dssp CHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 1111111111110001122334567778889999999999999999999998833
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-14 Score=150.18 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=98.4
Q ss_pred hhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 650 LISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
|.....+| |.||+|.. .+|..||+|.+........+.|.+|+
T Consensus 12 ~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 91 (310)
T 3s95_A 12 LIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKG 91 (310)
T ss_dssp EEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred eeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCC
Confidence 44455666 89999996 56899999976555445566777777
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCCCC-------
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSN------- 722 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~------- 722 (818)
|+ |+|||+|+++.+||+|||+++........
T Consensus 92 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 171 (310)
T 3s95_A 92 GTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSL 171 (310)
T ss_dssp CBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC------------
T ss_pred CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccc
Confidence 22 89999999999999999999977433211
Q ss_pred -------ccccccccceeCCC----CCCcchHHHHhcc---------cCCCc-cccceecccCCCcC---ccchHHHHHH
Q 003465 723 -------RTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPHI-TLTYILDQRISPPK---KQKIVQDIAL 778 (818)
Q Consensus 723 -------~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~~-~~~~~~d~~l~~~~---~~~~~~~~~~ 778 (818)
....+||++|+||| ...+...+.|+.. ..+.. ......+....... ...+..+...
T Consensus 172 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (310)
T 3s95_A 172 KKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPS 251 (310)
T ss_dssp --------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCCTT
T ss_pred cccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCCHH
Confidence 12567999999999 2222223333211 11110 00000000000000 0001112234
Q ss_pred HHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 779 ASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 779 ~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.+++..|++.+|++||++.+|++.|+.+
T Consensus 252 l~~li~~~l~~dP~~Rps~~~l~~~L~~l 280 (310)
T 3s95_A 252 FFPITVRCCDLDPEKRPSFVKLEHWLETL 280 (310)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 66788899999999999999999999987
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-12 Score=139.05 Aligned_cols=316 Identities=12% Similarity=-0.018 Sum_probs=179.4
Q ss_pred cccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCC
Q 003465 114 SGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTL 193 (818)
Q Consensus 114 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 193 (818)
+..-..+|.++.+|+.+.|..+ ++..-..+|.++++|+.+++..+ ++......|.++.+|+.+.+..+ +.......|
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 3334457888888888888643 65455567888888888888654 44344556777888877766544 332333455
Q ss_pred CCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcE
Q 003465 194 GHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVY 273 (818)
Q Consensus 194 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 273 (818)
.++..++...... +.......|.++++|+.+.+..+. .......|.++.+|+.+++..+ ++......+..+..|+.
T Consensus 137 ~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 137 KGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 5554433332222 222334567777778877776543 2244556677777777777654 33333445566666766
Q ss_pred EEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcc
Q 003465 274 LSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL 353 (818)
Q Consensus 274 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 353 (818)
+.+..+... +.........|+.+.+..+. .......+..+..|+.+.+..+... .....+..+..++.+....+.+
T Consensus 213 i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 213 MEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE
T ss_pred eecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee
Confidence 666554322 22233344566666664332 2223344556666666666554332 3334455666666666655443
Q ss_pred cccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccc
Q 003465 354 EGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433 (818)
Q Consensus 354 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 433 (818)
. ...+..+.+|+.+.+..+ ++......|.++.+|+.+++.++ ++..-...|.+|.+|+.+++..+ ++......|
T Consensus 289 ~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 289 P---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp C---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred c---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 2 234556666666666543 33344455666666666666533 44344455666666666666555 443444556
Q ss_pred cCCCCCCEEECcC
Q 003465 434 RNLSYLHELDLSL 446 (818)
Q Consensus 434 ~~l~~L~~L~Ls~ 446 (818)
.++++|+.+++..
T Consensus 363 ~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 363 QGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEEEEEG
T ss_pred hCCCCCCEEEECC
Confidence 6666666666654
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-14 Score=151.82 Aligned_cols=105 Identities=21% Similarity=0.226 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcchHHHHhccc----------CCC--ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQEILSLFSSTS----------DPH--ITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~~l~~~~~~~----------~~~--~~~~~ 758 (818)
|+|||+|.++.+||+|||+++...... ......||++|+||| ...+...+.|+... .+. .....
T Consensus 185 p~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~ 263 (311)
T 3p1a_A 185 PANIFLGPRGRCKLGDFGLLVELGTAG-AGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGEGWQQ 263 (311)
T ss_dssp GGGEEECGGGCEEECCCTTCEECC-------CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHH
T ss_pred HHHEEECCCCCEEEccceeeeecccCC-CCcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHH
Confidence 899999999999999999998764432 234567999999999 22222333443211 111 00111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+........ .+......+.+++..|++.+|++||++.|+++
T Consensus 264 ~~~~~~~~~---~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 264 LRQGYLPPE---FTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp HTTTCCCHH---HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HhccCCCcc---cccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 111111100 01122345677888999999999999999986
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.2e-14 Score=149.20 Aligned_cols=54 Identities=28% Similarity=0.357 Sum_probs=37.4
Q ss_pred ccccccCCC-CcccccccccceeccCCC----------------------------CCccccccccceeCCC---CCC-c
Q 003465 694 FNNILLNSE-FEAFFGNFGVARLLNSDS----------------------------SNRTLIAGTYRYIAPA---KHP-Q 740 (818)
Q Consensus 694 ~~NILLd~~-~~~ki~DFGla~~~~~~~----------------------------~~~~~~~gt~gy~aPE---~~~-~ 740 (818)
|+|||+|.+ +.+||+|||+|+...... ...+..+||++|+||| +.+ +
T Consensus 145 PeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y 224 (361)
T 4f9c_A 145 PSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQ 224 (361)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCC
T ss_pred HHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCC
Confidence 999999987 799999999998664321 0123467999999999 322 2
Q ss_pred c-hHHHHh
Q 003465 741 E-ILSLFS 747 (818)
Q Consensus 741 ~-~l~~~~ 747 (818)
+ ..+.|+
T Consensus 225 ~~~~DiWS 232 (361)
T 4f9c_A 225 TTAIDMWS 232 (361)
T ss_dssp CTHHHHHH
T ss_pred CCccchhh
Confidence 2 456665
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-13 Score=130.20 Aligned_cols=131 Identities=21% Similarity=0.125 Sum_probs=74.1
Q ss_pred CCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEE
Q 003465 315 HLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFL 394 (818)
Q Consensus 315 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 394 (818)
.+++|+.|++++|+++. ++......++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34444444444444442 222112222555555555555543 345556666666666666664443444666666666
Q ss_pred EccCCcCcccCCc--cccCCCCCCEEecccCcCcccCCcc----ccCCCCCCEEECcCCcCC
Q 003465 395 NLNSNKLNGSIPS--ELMNCFSLQSLILSNNSLTGRIPSE----IRNLSYLHELDLSLNFIS 450 (818)
Q Consensus 395 ~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~ 450 (818)
++++|.+. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|.+.
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666664 3443 5666677777777777776 34443 666777777777777654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-16 Score=154.47 Aligned_cols=128 Identities=25% Similarity=0.307 Sum_probs=64.6
Q ss_pred CCcEEEcCCCCCcccCCc------cccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCC
Q 003465 102 NLESFRIWYSNISGNIPS------EIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 175 (818)
.++.++++.+.+.+.+|. .|+.+++|++|+|++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344444444444444443 55555556666665555553 34 4555555555555555555 344444445555
Q ss_pred CEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCC-ccccCCCCCCEEEccCCcCC
Q 003465 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP-LDFGNLRHLKEVDLSGNKLN 234 (818)
Q Consensus 176 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~ 234 (818)
++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 555555555553 22 34445555555555555543211 23444555555555555444
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-13 Score=153.77 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=97.5
Q ss_pred hhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
+|.....+| |.||+|...++..||||.+..... ..++|.+|+
T Consensus 185 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~~g 263 (452)
T 1fmk_A 185 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG 263 (452)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTC
T ss_pred HceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhcCC
Confidence 344455666 899999988788899997765432 345677776
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCCC-Ccccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAG 728 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~g 728 (818)
|+ |+|||+++++.+||+|||+++....... ......|
T Consensus 264 sL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~ 343 (452)
T 1fmk_A 264 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 343 (452)
T ss_dssp BHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------C
T ss_pred CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcc
Confidence 22 8999999999999999999997754322 2334567
Q ss_pred ccceeCCC----CCCcchHHHHhc----------ccCC--CccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCC
Q 003465 729 TYRYIAPA----KHPQEILSLFSS----------TSDP--HITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPK 792 (818)
Q Consensus 729 t~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~ 792 (818)
++.|+||| ...+...+.|+. ...+ .....++++....+...+.+..+...+.+++..|++.+|+
T Consensus 344 ~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 423 (452)
T 1fmk_A 344 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 423 (452)
T ss_dssp CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred cccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence 89999999 222222233321 1111 1111122211111111111233455677888999999999
Q ss_pred CCCChHHHHHHHccCC
Q 003465 793 SVPTMQRVSQEFLKFP 808 (818)
Q Consensus 793 ~RP~m~~V~~~L~~~~ 808 (818)
+||+|.+|++.|+.+.
T Consensus 424 ~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 424 ERPTFEYLQAFLEDYF 439 (452)
T ss_dssp GSCCHHHHHHHHHTTT
T ss_pred hCcCHHHHHHHHHHHh
Confidence 9999999999999984
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-14 Score=151.89 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=99.5
Q ss_pred hhhhhcccc----CcEEEEEcC-CCcEEEEEecccccc-chhhhhHhhh-------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTK-HGCLVAEYGSEQGRS-AFFKSFQNEA------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~-~g~~vAvK~~~~~~~-~~~~~f~~E~------------------------------- 691 (818)
+|.....+| |.||+|... +|+.||||....... ...++|.+|+
T Consensus 115 ~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 194 (377)
T 3cbl_A 115 DLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELV 194 (377)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred HeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcC
Confidence 344455666 899999974 789999997664422 2334677776
Q ss_pred -----------------------------------------cc---ccccccCCCCcccccccccceeccCCCC--Cccc
Q 003465 692 -----------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTL 725 (818)
Q Consensus 692 -----------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~ 725 (818)
|+ |+|||+++++.+||+|||+++....... ....
T Consensus 195 ~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~ 274 (377)
T 3cbl_A 195 QGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGL 274 (377)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSC
T ss_pred CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCC
Confidence 22 8999999999999999999997543311 1122
Q ss_pred cccccceeCCC---CCCc-chHHHHhc----------ccCCC--ccc---cceecccCCCcCccchHHHHHHHHHHHHhc
Q 003465 726 IAGTYRYIAPA---KHPQ-EILSLFSS----------TSDPH--ITL---TYILDQRISPPKKQKIVQDIALASIVALAC 786 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~-~~l~~~~~----------~~~~~--~~~---~~~~d~~l~~~~~~~~~~~~~~~~~la~~C 786 (818)
..++++|+||| .... ...+.|+. ...+. ... .+.+....... .+..+...+.+++..|
T Consensus 275 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~c 351 (377)
T 3cbl_A 275 RQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLP---CPELCPDAVFRLMEQC 351 (377)
T ss_dssp CEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHH
T ss_pred CCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHH
Confidence 34678999999 1221 12233321 11111 111 11111111111 1223345667788899
Q ss_pred cCCCCCCCCChHHHHHHHccCC
Q 003465 787 LQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 787 ~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
|+.+|++||+|.+|++.|+++.
T Consensus 352 l~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 352 WAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHH
T ss_pred cCCCchhCcCHHHHHHHHHHHH
Confidence 9999999999999999998773
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=142.16 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=67.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCCC--ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDPH--ITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~~--~~~~~ 758 (818)
|+|||++.++.+||+|||+++.............||++|+||| ..+.+ ..+.|+.. ..+. ....+
T Consensus 144 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~ 223 (297)
T 3fxz_A 144 SDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR 223 (297)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred HHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999998766555556678999999999 22222 33344321 1111 10000
Q ss_pred ----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+........ ..+......+.+++..|++.||++||++.|+++
T Consensus 224 ~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 224 ALYLIATNGTPEL--QNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp HHHHHHHHCSCCC--SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHhCCCCCC--CCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 000000000 112222344567788999999999999999986
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-14 Score=152.60 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=59.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~ 754 (818)
|+|||+|.++.+||+|||+++....... ......||++|+||| +..+...+.|+. ...+. .
T Consensus 175 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~ 254 (373)
T 2qol_A 175 ARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM 254 (373)
T ss_dssp GGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC
T ss_pred cceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999999999999998754422 122345678899999 222222233321 11111 1
Q ss_pred ccc---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLT---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
... +.++....... +..+...+.+++..|++.+|++||+|.+|+++|+++
T Consensus 255 ~~~~~~~~i~~~~~~~~---~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~ 307 (373)
T 2qol_A 255 SNQDVIKAVDEGYRLPP---PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 307 (373)
T ss_dssp CHHHHHHHHHTTEECCC---CTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCC---CccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHH
Confidence 111 11112111111 223445677888999999999999999999999887
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-13 Score=156.15 Aligned_cols=157 Identities=19% Similarity=0.206 Sum_probs=103.4
Q ss_pred hhhhhcccc----CcEEEEEcCC-CcEEEEEeccccccchhhhhHhhh--------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTKH-GCLVAEYGSEQGRSAFFKSFQNEA-------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~~-g~~vAvK~~~~~~~~~~~~f~~E~-------------------------------- 691 (818)
+|.....|| |.||+|.... +..||||.+..... ..++|.+|+
T Consensus 221 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~ 299 (495)
T 1opk_A 221 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT 299 (495)
T ss_dssp GEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred HceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccC
Confidence 344555666 8999999754 88999998765432 345677776
Q ss_pred -----------------------------------------cc---ccccccCCCCcccccccccceeccCCCC-Ccccc
Q 003465 692 -----------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLI 726 (818)
Q Consensus 692 -----------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~ 726 (818)
|+ |+|||+|+++.+||+|||+++....+.. .....
T Consensus 300 ~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~ 379 (495)
T 1opk_A 300 YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 379 (495)
T ss_dssp TCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTC
T ss_pred CCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCC
Confidence 22 8999999999999999999998754321 22345
Q ss_pred ccccceeCCC---CCCcc-hHHHHhc----------c--cCCCccccc---eecccCCCcCccchHHHHHHHHHHHHhcc
Q 003465 727 AGTYRYIAPA---KHPQE-ILSLFSS----------T--SDPHITLTY---ILDQRISPPKKQKIVQDIALASIVALACL 787 (818)
Q Consensus 727 ~gt~gy~aPE---~~~~~-~l~~~~~----------~--~~~~~~~~~---~~d~~l~~~~~~~~~~~~~~~~~la~~C~ 787 (818)
.|+++|+||| ..+.+ ..+.|+. . .+......+ .+........ +..+...+.+++..||
T Consensus 380 ~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl 456 (495)
T 1opk_A 380 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER---PEGCPEKVYELMRACW 456 (495)
T ss_dssp CCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCC---CTTCCHHHHHHHHHHT
T ss_pred cCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHc
Confidence 6788999999 11111 2223321 1 111111112 2222222111 2334456778888999
Q ss_pred CCCCCCCCChHHHHHHHccCCC
Q 003465 788 QSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 788 ~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
+.+|++||+|.+|++.|+.+..
T Consensus 457 ~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 457 QWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp CSSGGGSCCHHHHHHHHHTSCS
T ss_pred CcChhHCcCHHHHHHHHHHHHh
Confidence 9999999999999999998843
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.8e-16 Score=151.80 Aligned_cols=132 Identities=25% Similarity=0.301 Sum_probs=77.6
Q ss_pred ccCCCcCceecccCcccccCCCC------CCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCC
Q 003465 121 IGALSKLQILDLSHNNLTGTIPS------KLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLG 194 (818)
Q Consensus 121 ~~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 194 (818)
+.....++.++++.+.+.+.+|. .|..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 56677888889988888877665 56666677777777776664 44 5666666666666666665 3444444
Q ss_pred CCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCC-CCCCCCCcceEEEccCCCC
Q 003465 195 HLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIA-STIGDLTNLNSLDLSSKQL 257 (818)
Q Consensus 195 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l 257 (818)
.+++|++|++++|++++ +| .+.++++|++|++++|++++..+ ..+..+++|++|++++|.+
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 55566666666666554 22 34455555555555555543111 2333444444444444443
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-14 Score=148.45 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=65.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhcc---------cCCCcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~~~-- 755 (818)
|+|||++.++.+||+|||+++....... ......||..|+||| ...+...+.|+.. ..+...
T Consensus 142 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~ 221 (295)
T 3ugc_A 142 TRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP 221 (295)
T ss_dssp GGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHH
T ss_pred HhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCCh
Confidence 8999999999999999999998754422 223456888999999 2222222333211 000000
Q ss_pred -------------------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 -------------------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 -------------------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+.+...... +.+..+...+.+++..|++.+|++||++.||+++|+++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~ 290 (295)
T 3ugc_A 222 AEFMRMIGNDKQGQMIVFHLIELLKNNGRL---PRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 290 (295)
T ss_dssp HHHHHHHCTTCCTHHHHHHHHHHHHTTCCC---CCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHhhhcCccccchhHHHHHHHHhccCcC---CCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 00001111111 112233456777888999999999999999999999873
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-13 Score=145.22 Aligned_cols=114 Identities=16% Similarity=0.262 Sum_probs=60.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+|||++.++.+||+|||+++.............||.+|+||| .. .+...+.|+. ...+ .....+
T Consensus 167 p~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~ 246 (309)
T 3p86_A 167 SPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ 246 (309)
T ss_dssp GGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHH
T ss_pred hhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 7899999999999999999987654433345678999999999 11 1222233321 1111 111111
Q ss_pred eeccc-CCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 759 ILDQR-ISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 759 ~~d~~-l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.... ........+......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~ 296 (309)
T 3p86_A 247 VVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPL 296 (309)
T ss_dssp HHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11000 00000001112234566788899999999999999999999988
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-13 Score=146.28 Aligned_cols=114 Identities=16% Similarity=0.217 Sum_probs=72.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCcc-hHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~--~~~~~ 755 (818)
|+|||+|+++.+||+|||+++...... .......||++|+||| ..+.+ ..+.|+. .. +....
T Consensus 231 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~ 310 (370)
T 2psq_A 231 ARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP 310 (370)
T ss_dssp GGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 899999999999999999999775432 2234567889999999 22222 2333321 11 11111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++......+.....+..+...+.+++..|++.+|++||++.|+++.|+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~i 362 (370)
T 2psq_A 311 VEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 362 (370)
T ss_dssp GGGHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1222111111111011223445677788899999999999999999999987
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-13 Score=140.24 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=69.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||+++.++.+||+|||+++....... ......||++|+||| ...+...+.|+. ...+. ...
T Consensus 132 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~ 211 (268)
T 3sxs_A 132 ARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN 211 (268)
T ss_dssp GGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred cceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh
Confidence 8999999999999999999997754422 223456778899999 111112222321 11111 111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
.+.............+......+.+++..|++.+|++||++.||++.|+.++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 212 SEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp HHHHHHHHTTCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred HHHHHHHHcCCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 11111000000000011122346678889999999999999999999999854
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-13 Score=142.03 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=69.6
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC----CCCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||+++.++.+||+|||+++...... .......||++|+||| ...+...+.|+. ...+. ...
T Consensus 134 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~ 213 (269)
T 4hcu_A 134 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN 213 (269)
T ss_dssp GGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred hheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH
Confidence 899999999999999999998764331 1233456788999999 222222233321 11111 111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.++............+......+.+++..|++.+|++||++.++++.|+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~ 265 (269)
T 4hcu_A 214 SEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 265 (269)
T ss_dssp HHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHH
Confidence 1111110000000011112344667888999999999999999999999874
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-12 Score=121.60 Aligned_cols=84 Identities=32% Similarity=0.353 Sum_probs=33.4
Q ss_pred CCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEcc
Q 003465 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLS 229 (818)
Q Consensus 150 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 229 (818)
+|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 34444444444443333334444444444444444443333333334444444444444433333333334444444444
Q ss_pred CCcC
Q 003465 230 GNKL 233 (818)
Q Consensus 230 ~n~l 233 (818)
+|.+
T Consensus 111 ~N~~ 114 (170)
T 3g39_A 111 NNPW 114 (170)
T ss_dssp SSCB
T ss_pred CCCC
Confidence 4433
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=121.48 Aligned_cols=106 Identities=24% Similarity=0.291 Sum_probs=74.7
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+++++++|.++. +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455566666553 454442 67777777777777666777777777777777777777666666777777777777777
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCcc
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGC 212 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 212 (818)
.+++..+..|..+++|++|+|++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 77766666677777888888888777643
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-13 Score=151.25 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=69.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc-chHHHHhc----------cc--CCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-EILSLFSS----------TS--DPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~----------~~--~~~~~~~ 757 (818)
|+|||+++++.+||+|||+++..... .....+++.|+||| .... ...+.|+. .. +......
T Consensus 317 p~Nill~~~~~~kl~DfG~a~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~ 393 (450)
T 1k9a_A 317 ARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK 393 (450)
T ss_dssp GGGEEECTTSCEEECCCTTCEECC---------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTT
T ss_pred HhhEEECCCCCEEEeeCCCccccccc---ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 89999999999999999999965322 22336789999999 2222 22233321 11 1111222
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
+++.....+...+.+..+...+.+++..||+.+|++||+|.++++.|+.+.
T Consensus 394 ~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~ 444 (450)
T 1k9a_A 394 DVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIR 444 (450)
T ss_dssp THHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 222211111111123334556778888999999999999999999999874
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-13 Score=147.30 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=70.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||++.++.+||+|||+|+....... ......||++|+||| ...+...+.|+. ...+ ...
T Consensus 145 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 224 (327)
T 3poz_A 145 ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP 224 (327)
T ss_dssp GGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred hheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC
Confidence 8999999999999999999998754432 234566789999999 222222233321 1111 111
Q ss_pred ---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 ---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.+.+........ +..+...+.+++..|++.+|++||+|.||+++|+.+
T Consensus 225 ~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~ 276 (327)
T 3poz_A 225 ASEISSILEKGERLPQ---PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 276 (327)
T ss_dssp GGGHHHHHHTTCCCCC---CTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCC---CccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 1112222211111 233445677888999999999999999999999876
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=138.11 Aligned_cols=114 Identities=16% Similarity=0.268 Sum_probs=71.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCC----ccccccccceeCCC---CC------C-cchHHHHhc---------c-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN----RTLIAGTYRYIAPA---KH------P-QEILSLFSS---------T- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~----~~~~~gt~gy~aPE---~~------~-~~~l~~~~~---------~- 749 (818)
|+|||++.++++||+|||+|+........ .....||++|+||| .. + +...+.|+. .
T Consensus 141 p~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~ 220 (301)
T 3q4u_A 141 SKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRM 220 (301)
T ss_dssp GGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred hHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhh
Confidence 89999999999999999999877544321 23457999999999 11 1 112333321 1
Q ss_pred ---------cCCCcc----------cccee-cccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 750 ---------SDPHIT----------LTYIL-DQRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 750 ---------~~~~~~----------~~~~~-d~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+... ....+ ......... .........+.+++..|++.+|++||+|.||+++|+++
T Consensus 221 ~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 221 VSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 000000 00000 000001110 01234556788899999999999999999999999865
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-13 Score=144.19 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=70.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCC-cchHHHHhcc---------cCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHP-QEILSLFSST---------SDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~---------~~~~~--- 754 (818)
|+|||++.++.+||+|||+++....... ......||..|+||| ..+ +...+.|+.. ..+..
T Consensus 155 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~ 234 (327)
T 3lxl_A 155 ARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPS 234 (327)
T ss_dssp GGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH
T ss_pred hhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCcccc
Confidence 8999999999999999999998754432 234466899999999 111 1122223211 00000
Q ss_pred -----------------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 755 -----------------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 755 -----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
...+.+........ +......+.+++..|++.+|++||++.||+++|+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 302 (327)
T 3lxl_A 235 AEFLRMMGCERDVPALSRLLELLEEGQRLPA---PPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLW 302 (327)
T ss_dssp HHHHHHCC----CCHHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-
T ss_pred chhhhhcccccccccHHHHHHHhhcccCCCC---CCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 00001111111111 2223345677888999999999999999999999883
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.2e-12 Score=120.30 Aligned_cols=104 Identities=26% Similarity=0.347 Sum_probs=45.6
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+.++++++.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34455544443 3333332 44444555544444444444444444444444444444333333344444444444444
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCC
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQIN 210 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~ 210 (818)
.+++..+..+..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 444333323444444444444444433
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-13 Score=142.88 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=72.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC--CC------Ccc-hHHHHhc---------ccCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA--KH------PQE-ILSLFSS---------TSDPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE--~~------~~~-~l~~~~~---------~~~~~ 753 (818)
|+|||+++++.+||+|||+|+....... .....+||++|+||| .. +.. ..+.|+. ...+.
T Consensus 159 p~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf 238 (322)
T 3soc_A 159 SKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAA 238 (322)
T ss_dssp GGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTS
T ss_pred hHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCC
Confidence 8999999999999999999998754432 234568999999999 11 111 2233431 11110
Q ss_pred -c-----------------cccce----ecccCCCcCcc--chHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 754 -I-----------------TLTYI----LDQRISPPKKQ--KIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 754 -~-----------------~~~~~----~d~~l~~~~~~--~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
+ ...++ ......+.... ....+...+.+++..|++.||++||++.||+++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~ 317 (322)
T 3soc_A 239 DGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQ 317 (322)
T ss_dssp SSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCcchhccchhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 0 00000 00111111100 11234556888999999999999999999999999874
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-13 Score=143.34 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=66.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc--chHHHHhcc-----------cCCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ--EILSLFSST-----------SDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~--~~l~~~~~~-----------~~~~~~~~ 757 (818)
|+|||+|.++.+||+|||+++...... .....+||++|+||| ..+. ...+.|+.. .+......
T Consensus 142 p~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~ 220 (328)
T 3fe3_A 142 AENLLLDADMNIKIADFGFSNEFTVGG-KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK 220 (328)
T ss_dssp GGGEEECTTSCEEECSTTCCGGGSSSC-GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred HHHEEEcCCCCEEEeeccCceecCCCC-ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH
Confidence 899999999999999999998765432 345568999999999 2221 234445321 11111111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
++.+....+.. ..+......+.++...|++.||++|||+.|+++.
T Consensus 221 ~~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 221 ELRERVLRGKY-RIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp HHHHHHHHCCC-CCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred HHHHHHHhCCC-CCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 11111111110 0011122345567789999999999999999753
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.2e-12 Score=120.28 Aligned_cols=105 Identities=25% Similarity=0.358 Sum_probs=76.1
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccC
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 207 (818)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 66777777776 5565553 67777777777777666777777777777777777777655555677777777777777
Q ss_pred cCCccCCccccCCCCCCEEEccCCcCCC
Q 003465 208 QINGCIPLDFGNLRHLKEVDLSGNKLNG 235 (818)
Q Consensus 208 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 235 (818)
++++..+..|..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7776555557777777777777777653
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-13 Score=140.07 Aligned_cols=43 Identities=30% Similarity=0.341 Sum_probs=35.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.........+...||.+|+|||
T Consensus 147 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE 189 (311)
T 3niz_A 147 PQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPD 189 (311)
T ss_dssp GGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHH
T ss_pred hHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHH
Confidence 8999999999999999999998765544455667999999999
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-12 Score=136.20 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=37.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.........+...||.+|+|||
T Consensus 129 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE 171 (292)
T 3o0g_A 129 PQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPD 171 (292)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHH
T ss_pred HHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChH
Confidence 8999999999999999999998765544455678999999999
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-13 Score=152.48 Aligned_cols=159 Identities=19% Similarity=0.168 Sum_probs=101.9
Q ss_pred hhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
+|.....|| |.||+|...++..||||.+..... ..++|.+|+
T Consensus 268 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~~g 346 (535)
T 2h8h_A 268 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG 346 (535)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTE
T ss_pred hhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhcCC
Confidence 344455666 899999988788899997765432 335577776
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCC-CCcccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAG 728 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~g 728 (818)
|+ ++|||+++++.+||+|||+++...... .......|
T Consensus 347 sL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~ 426 (535)
T 2h8h_A 347 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 426 (535)
T ss_dssp EHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTS
T ss_pred cHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcC
Confidence 22 899999999999999999998764321 11234567
Q ss_pred ccceeCCC----CCCcchHHHHhc----------ccCC--CccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCC
Q 003465 729 TYRYIAPA----KHPQEILSLFSS----------TSDP--HITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPK 792 (818)
Q Consensus 729 t~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~ 792 (818)
+..|+||| ...+...+.|+. ...+ .....++++....+...+.+..+...+.+++..||+.+|+
T Consensus 427 ~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 506 (535)
T 2h8h_A 427 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 506 (535)
T ss_dssp CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred cccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 88999999 222222333321 1111 1111122211111111011223445677888899999999
Q ss_pred CCCChHHHHHHHccCC
Q 003465 793 SVPTMQRVSQEFLKFP 808 (818)
Q Consensus 793 ~RP~m~~V~~~L~~~~ 808 (818)
+||+|.+|++.|+.+-
T Consensus 507 ~RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 507 ERPTFEYLQAFLEDYF 522 (535)
T ss_dssp GSCCHHHHHHHHHTSS
T ss_pred HCcCHHHHHHHHHHHh
Confidence 9999999999999983
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-13 Score=154.30 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=68.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhc----------cc--CCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TS--DPHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~--~~~~ 754 (818)
|+|||+|+++.+||+|||+|+.+..+.. ......||++|+||| ...+...+.|+. .. +...
T Consensus 464 p~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~ 543 (613)
T 2ozo_A 464 ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM 543 (613)
T ss_dssp GGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred HHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 8999999999999999999997754322 122345678999999 222222333321 11 1111
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++.+....+.....+..+...+.+++..||+.+|++||+|.+|++.|+.+
T Consensus 544 ~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 596 (613)
T 2ozo_A 544 KGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596 (613)
T ss_dssp CSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 11122211111111112333456677889999999999999999999999987
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.6e-13 Score=143.89 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=69.2
Q ss_pred ccccccCCC---CcccccccccceeccCC--CCCccccccccceeCCC----CCCcchHHHHhc----------ccCC--
Q 003465 694 FNNILLNSE---FEAFFGNFGVARLLNSD--SSNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~~---~~~ki~DFGla~~~~~~--~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~-- 752 (818)
|+|||++.+ ..+||+|||+|+..... ........||++|+||| ...+...+.|+. ...+
T Consensus 209 p~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~ 288 (367)
T 3l9p_A 209 ARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYP 288 (367)
T ss_dssp GGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred hhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 899999954 45999999999866332 22234567899999999 222223333431 1111
Q ss_pred CccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 753 HITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 753 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.....++.+....+.....+......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 289 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~ 343 (367)
T 3l9p_A 289 SKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 343 (367)
T ss_dssp TCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 1111111111111110011222334567788899999999999999999999877
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-13 Score=138.95 Aligned_cols=155 Identities=18% Similarity=0.117 Sum_probs=98.3
Q ss_pred hhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
+|.....+| |.||+|...++..||||....... ..++|.+|+
T Consensus 25 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 103 (283)
T 3gen_A 25 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMAN 103 (283)
T ss_dssp GEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTT
T ss_pred HHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCC
Confidence 344455666 899999988888999997765432 234566665
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCC-CCcccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAG 728 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~g 728 (818)
|+ |+||++++++.+||+|||+++...... .......|
T Consensus 104 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 183 (283)
T 3gen_A 104 GCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF 183 (283)
T ss_dssp CBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTS
T ss_pred CcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccccccccccccccccCCcc
Confidence 22 899999999999999999998764321 12234567
Q ss_pred ccceeCCC----CCCcchHHHHhc----------ccCCCc--ccc---ceecccCCCcCccchHHHHHHHHHHHHhccCC
Q 003465 729 TYRYIAPA----KHPQEILSLFSS----------TSDPHI--TLT---YILDQRISPPKKQKIVQDIALASIVALACLQS 789 (818)
Q Consensus 729 t~gy~aPE----~~~~~~l~~~~~----------~~~~~~--~~~---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~ 789 (818)
|++|+||| ...+...+.|+. ...+.. ... +.+........ +......+.+++..|++.
T Consensus 184 ~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~ 260 (283)
T 3gen_A 184 PVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYR---PHLASEKVYTIMYSCWHE 260 (283)
T ss_dssp CGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHTTCS
T ss_pred CcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCC---CCcCCHHHHHHHHHHccC
Confidence 88999999 222222233321 111111 100 11111111111 111234566788899999
Q ss_pred CCCCCCChHHHHHHHccC
Q 003465 790 KPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 790 ~p~~RP~m~~V~~~L~~~ 807 (818)
+|++||++.++++.|+++
T Consensus 261 ~p~~Rps~~~ll~~L~~~ 278 (283)
T 3gen_A 261 KADERPTFKILLSNILDV 278 (283)
T ss_dssp SGGGSCCHHHHHHHHHHH
T ss_pred ChhHCcCHHHHHHHHHHH
Confidence 999999999999999876
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.4e-13 Score=151.18 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=98.1
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh-------------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA------------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~------------------------------- 691 (818)
++|.....|| |.||+|.. .+|+.||||.+........+.+.+|+
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~ 236 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence 3455556677 89999985 56999999976554433445566666
Q ss_pred -----------------------------------------cc---ccccccCCC--CcccccccccceeccCCCCCccc
Q 003465 692 -----------------------------------------HV---FNNILLNSE--FEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 -----------------------------------------h~---~~NILLd~~--~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||++.+ +.+||+|||+|+.+.... ....
T Consensus 237 ~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~-~~~~ 315 (573)
T 3uto_A 237 SGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ-SVKV 315 (573)
T ss_dssp CCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS-EEEE
T ss_pred CCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC-ceee
Confidence 22 899999865 789999999999875443 3345
Q ss_pred cccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccceec----ccCCCcCccchHHHHHHHHHHHHhc
Q 003465 726 IAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTYILD----QRISPPKKQKIVQDIALASIVALAC 786 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~~~d----~~l~~~~~~~~~~~~~~~~~la~~C 786 (818)
.+||+.||||| ..+++ ..+.|+.. .+......+++. ....... ......-..+.++...|
T Consensus 316 ~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~dli~~~ 394 (573)
T 3uto_A 316 TTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDD-SAFSGISEDGKDFIRKL 394 (573)
T ss_dssp ECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCS-GGGTTSCHHHHHHHHTT
T ss_pred eEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCc-ccccCCCHHHHHHHHHH
Confidence 68999999999 44444 45556421 111111111111 1111111 11111123445677799
Q ss_pred cCCCCCCCCChHHHHH
Q 003465 787 LQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 787 ~~~~p~~RP~m~~V~~ 802 (818)
++.||++||++.|+++
T Consensus 395 L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 395 LLADPNTRMTIHQALE 410 (573)
T ss_dssp SCSSGGGSCCHHHHHH
T ss_pred ccCChhHCcCHHHHhc
Confidence 9999999999999886
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-13 Score=143.89 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=61.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC----CCCcchHHHHhc----------cc--CCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TS--DPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~--~~~ 753 (818)
|+|||+|+++.+||+|||+++....... ..+...||++|+||| ...+...+.|+. .. +..
T Consensus 220 p~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~ 299 (373)
T 3c1x_A 220 ARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 299 (373)
T ss_dssp GGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT
T ss_pred hheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCC
Confidence 8999999999999999999987643321 224566889999999 222222333321 11 111
Q ss_pred ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 754 ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 754 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....++......+.....+..+...+.+++..||+.+|++||++.||++.|+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i 353 (373)
T 3c1x_A 300 VNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353 (373)
T ss_dssp SCSSCHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 111111111111111011222344577788899999999999999999999987
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-13 Score=141.80 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=68.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||++.++.+||+|||+++....... ..+...||.+|+||| ...+...+.|+. ...+ ...
T Consensus 143 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~ 222 (325)
T 3kex_A 143 ARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR 222 (325)
T ss_dssp STTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred hheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC
Confidence 8999999999999999999998754432 235667889999999 222222233321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..++.+..........+..+...+.+++..|++.+|++||+|.+|++.|+++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~ 275 (325)
T 3kex_A 223 LAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMA 275 (325)
T ss_dssp TTHHHHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 11111110000000011122334567888999999999999999999998873
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.9e-13 Score=140.73 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||+++++.+||+|||+|+....... ......||++|+||| ...+...+.|+. ...+ ...
T Consensus 165 p~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~ 244 (323)
T 3qup_A 165 ARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE 244 (323)
T ss_dssp GGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred cceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC
Confidence 8999999999999999999987654322 223456788999999 222222233321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++............+......+.+++..|++.+|++||++.++++.|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 296 (323)
T 3qup_A 245 NAEIYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENI 296 (323)
T ss_dssp GGGHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1122111111111011223344567788899999999999999999999987
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-13 Score=155.02 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=67.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~ 754 (818)
|+|||+|+++.+||+|||+|+.+..+.. ..+...||++|+||| ...+...+.|+. ...+ ..
T Consensus 497 p~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~ 576 (635)
T 4fl3_A 497 ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM 576 (635)
T ss_dssp GGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred hHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999999999999998754422 234556789999999 222223333321 1111 11
Q ss_pred cccce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++ +....... .+..+...+.+++..||+.+|++||+|.+|+++|+.+
T Consensus 577 ~~~~~~~~i~~~~~~~---~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 577 KGSEVTAMLEKGERMG---CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp CHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 11111 11111111 1233445677888899999999999999999999865
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7e-13 Score=139.65 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=69.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCC-cchHHHHhccc---------CCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHP-QEILSLFSSTS---------DPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~~---------~~~~--- 754 (818)
|+|||++.++.+||+|||+++....... ......||..|+||| ..+ +...+.|+... .+..
T Consensus 154 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 233 (302)
T 4e5w_A 154 ARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPM 233 (302)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH
T ss_pred hheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchh
Confidence 8999999999999999999998765432 234567899999999 111 11222332110 0000
Q ss_pred --------------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 --------------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 --------------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....+..........+.+......+.+++..|++.+|++||++.+|+++|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 234 ALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp HHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred hHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 00000000000000001122234567788899999999999999999999864
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.7e-13 Score=143.87 Aligned_cols=114 Identities=14% Similarity=0.219 Sum_probs=71.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCC-cchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||+++++.+||+|||+|+...... .......||++|+||| ... +...+.|+. ...+ ...
T Consensus 219 p~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~ 298 (382)
T 3tt0_A 219 ARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 298 (382)
T ss_dssp GGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred cceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 899999999999999999999775432 2344567899999999 222 222333321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+..........+......+.+++..|++.+|++||+|.||++.|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 350 (382)
T 3tt0_A 299 VEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 350 (382)
T ss_dssp HHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1111111111100011222334567788899999999999999999999988
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-12 Score=137.13 Aligned_cols=104 Identities=23% Similarity=0.338 Sum_probs=68.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc-c-hHHHHhc---------ccCCCccccce
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-E-ILSLFSS---------TSDPHITLTYI 759 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~-~l~~~~~---------~~~~~~~~~~~ 759 (818)
|+|||++.++.+||+|||+++....... ....+||++|+||| ..+. . ..+.|+. ...+.....+.
T Consensus 158 p~NIll~~~~~~kL~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~ 236 (335)
T 3dls_A 158 DENIVIAEDFTIKLIDFGSAAYLERGKL-FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET 236 (335)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCTTCC-BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG
T ss_pred HHHEEEcCCCcEEEeecccceECCCCCc-eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH
Confidence 8999999999999999999998754432 34567999999999 2222 2 2334431 22222222333
Q ss_pred ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 760 LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 760 ~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
......... .....+.+++..|++.+|++||++.++++.
T Consensus 237 ~~~~~~~~~-----~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 237 VEAAIHPPY-----LVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp TTTCCCCSS-----CCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred HhhccCCCc-----ccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 333332221 122345667779999999999999999874
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-12 Score=136.75 Aligned_cols=43 Identities=33% Similarity=0.342 Sum_probs=31.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.........+...||.+|+|||
T Consensus 128 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE 170 (288)
T 1ob3_A 128 PQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPD 170 (288)
T ss_dssp GGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHH
T ss_pred HHHEEEcCCCCEEEeECccccccCccccccccccccccccCch
Confidence 8999999999999999999987754433344567999999999
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.9e-13 Score=151.08 Aligned_cols=105 Identities=19% Similarity=0.106 Sum_probs=64.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---C-CCcc-hHHHHhcc---------cCCC--cc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---K-HPQE-ILSLFSST---------SDPH--IT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~-~~~~-~l~~~~~~---------~~~~--~~-- 755 (818)
|+|||||+++++||+|||+|+.+.... +...+||+.||||| + .+++ ..+.|+.+ ..+. ..
T Consensus 320 PeNILld~~G~vKL~DFGlA~~~~~~~--~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~ 397 (689)
T 3v5w_A 320 PANILLDEHGHVRISDLGLACDFSKKK--PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK 397 (689)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSCC--CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC
T ss_pred hHHeEEeCCCCEEecccceeeecCCCC--CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence 899999999999999999999875433 34568999999999 2 3444 55666532 1111 11
Q ss_pred -ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-----hHHHH
Q 003465 756 -LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-----MQRVS 801 (818)
Q Consensus 756 -~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-----m~~V~ 801 (818)
..++....+.... ..+...-..+.++...|++.||++|++ +.||.
T Consensus 398 ~~~~i~~~i~~~~~-~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~ 448 (689)
T 3v5w_A 398 DKHEIDRMTLTMAV-ELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVK 448 (689)
T ss_dssp CHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred HHHHHHHhhcCCCC-CCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence 1111111111100 001111223456777999999999998 56665
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-12 Score=138.62 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc-c-hHHHHhc---------c--cCCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-E-ILSLFSS---------T--SDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~-~l~~~~~---------~--~~~~~~~~ 757 (818)
|+|||+|+++.+||+|||+++...... .....+||++|+||| ..+. + ..+.|+. . .+......
T Consensus 136 p~NIll~~~~~~kl~DFG~s~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~ 214 (336)
T 3h4j_B 136 PENLLLDDNLNVKIADFGLSNIMTDGN-FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP 214 (336)
T ss_dssp TTTEEECTTCCEEECCSSCTBTTTTSB-TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST
T ss_pred hhhEEEcCCCCEEEEEeccceeccCCc-ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH
Confidence 899999999999999999998765432 234567999999999 2221 1 3344431 1 11112122
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
++......... ..+......+.+++..|++.||++|||+.|+++
T Consensus 215 ~~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 215 NLFKKVNSCVY-VMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp TCBCCCCSSCC-CCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHcCCC-CCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 22221111111 111112234556778999999999999999975
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-12 Score=139.60 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=65.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++............+||++|+||| ..+.+ ..+.|+.. ..+ .....+
T Consensus 133 p~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~ 212 (337)
T 1o6l_A 133 LENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER 212 (337)
T ss_dssp GGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHH
Confidence 8999999999999999999987544444455678999999999 22222 33444321 111 111111
Q ss_pred e----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 I----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+ ....+.. +......+.++...|++.+|++|| ++.||++
T Consensus 213 ~~~~i~~~~~~~-----p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 213 LFELILMEEIRF-----PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp HHHHHHHCCCCC-----CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHcCCCCC-----CCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 1 1111111 111123455677799999999999 8888864
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.8e-13 Score=136.97 Aligned_cols=114 Identities=11% Similarity=0.186 Sum_probs=59.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~ 756 (818)
|+|||++.++.+||+|||+++....... ......||++|+||| ...+...+.|+. ...+ ....
T Consensus 144 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~ 223 (281)
T 1mp8_A 144 ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN 223 (281)
T ss_dssp GGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred HHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH
Confidence 8999999999999999999997754322 234456788999999 222222233321 1111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+++.........+.+......+.+++..|++.+|++||++.||++.|+++
T Consensus 224 ~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 274 (281)
T 1mp8_A 224 NDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 274 (281)
T ss_dssp GGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 111111111100011222344566788899999999999999999999876
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.9e-13 Score=138.72 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=70.3
Q ss_pred cccccc---CCCCcccccccccceeccCCCC-------CccccccccceeCCC---CCCcc-hHHHHhc---------cc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TS 750 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~ 750 (818)
|+|||+ ++++.+||+|||+++....... ......||.+|+||| ..+.+ ..+.|+. ..
T Consensus 133 p~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~ 212 (296)
T 4hgt_A 133 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS 212 (296)
T ss_dssp GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCC
Confidence 899999 8999999999999998754422 224568999999999 22222 2333431 11
Q ss_pred CCCccc-----cce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 DPHITL-----TYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~~~~~~-----~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+.... .+. ....+..............+.+++..|++.+|++||++.+|++.|+++
T Consensus 213 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~ 278 (296)
T 4hgt_A 213 LPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 278 (296)
T ss_dssp CTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred CCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 111100 000 000110000000011134577888899999999999999999999987
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-12 Score=141.19 Aligned_cols=118 Identities=11% Similarity=0.076 Sum_probs=70.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||+|+++.+||+|||+++...... .......||++|+||| ...+...+.|+. ...+ ...
T Consensus 202 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 281 (343)
T 1luf_A 202 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA 281 (343)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred cceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCC
Confidence 789999999999999999998764332 2234567899999999 222222233321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCcC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYLD 811 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~~ 811 (818)
..++......+.....+......+.+++..|++.+|++||++.+|++.|+++....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~ 337 (343)
T 1luf_A 282 HEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERA 337 (343)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred hHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhh
Confidence 11111111111100112223345677888999999999999999999999985443
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.9e-13 Score=136.07 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=69.3
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC----CCCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||++|+++.+||+|||+++...... .......||..|+||| ...+...+.|+. ...+. ...
T Consensus 132 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~ 211 (267)
T 3t9t_A 132 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN 211 (267)
T ss_dssp GGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred hheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH
Confidence 899999999999999999998764321 1223456788999999 222222233321 11111 111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.++............+......+.+++..|++.+|++||++.++++.|+++.
T Consensus 212 ~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~ 263 (267)
T 3t9t_A 212 SEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 263 (267)
T ss_dssp HHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 1111110000000011112345667888999999999999999999999874
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=7.4e-13 Score=137.74 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=69.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC---CCCcc-hHHHHhc----------ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~~~--~~~~ 756 (818)
|+||++|+++.+||+|||+++....... ......||..|+||| ..+.+ ..+.|+. ...+ ....
T Consensus 137 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~ 216 (279)
T 1qpc_A 137 AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN 216 (279)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH
T ss_pred HhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH
Confidence 8999999999999999999998754322 223456788999999 12211 2222321 1111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+++.....+.....+......+.+++..|++.+|++||++.++++.|+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 267 (279)
T 1qpc_A 217 PEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267 (279)
T ss_dssp HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence 111111000000001122234566788899999999999999999999887
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.4e-13 Score=138.58 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=70.4
Q ss_pred cccccc---CCCCcccccccccceeccCCCC-------CccccccccceeCCC---CCC-cchHHHHhc---------cc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TS 750 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~ 750 (818)
|+|||+ ++++.+||+|||+++....... ......||.+|+||| ..+ +...+.|+. ..
T Consensus 133 p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~ 212 (296)
T 3uzp_A 133 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS 212 (296)
T ss_dssp GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCC
Confidence 899999 5899999999999998755432 124568999999999 222 223333431 11
Q ss_pred CCCccc-----c----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 DPHITL-----T----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~~~~~~-----~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+.... . .+....+..............+.+++..|++.+|++||++.+|++.|+++
T Consensus 213 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 278 (296)
T 3uzp_A 213 LPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 278 (296)
T ss_dssp CTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred CCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHH
Confidence 111100 0 01111111000000011234577788899999999999999999999987
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-12 Score=132.66 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=67.9
Q ss_pred ccccccCCCCc-----ccccccccceeccCCCCCccccccccceeCCCCC-----Cc-chHHHHhc---------ccCC-
Q 003465 694 FNNILLNSEFE-----AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH-----PQ-EILSLFSS---------TSDP- 752 (818)
Q Consensus 694 ~~NILLd~~~~-----~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~-----~~-~~l~~~~~---------~~~~- 752 (818)
|+|||++.+.. +||+|||+++.... ......||+.|+|||.. +. ...+.|+. ...+
T Consensus 152 p~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf 228 (287)
T 4f0f_A 152 SPNIFLQSLDENAPVCAKVADFGLSQQSVH---SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPF 228 (287)
T ss_dssp GGGEEESCCCTTCSCCEEECCCTTCBCCSS---CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTT
T ss_pred cceEEEeccCCCCceeEEeCCCCccccccc---cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCC
Confidence 78999988776 99999999985432 23456799999999921 11 12333431 1111
Q ss_pred -Ccccc------ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 753 -HITLT------YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 753 -~~~~~------~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..... .+......... +......+.+++..|++.+|++||++.||++.|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 229 DEYSYGKIKFINMIREEGLRPTI---PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp TTCCCCHHHHHHHHHHSCCCCCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred ccccccHHHHHHHHhccCCCCCC---CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 11111 11111221111 222334567788899999999999999999999864
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-12 Score=137.06 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=69.9
Q ss_pred ccccccCCCCc-----ccccccccceeccCCCC-------CccccccccceeCCC---CCC-cchHHHHhc---------
Q 003465 694 FNNILLNSEFE-----AFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHP-QEILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILLd~~~~-----~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~-~~~l~~~~~--------- 748 (818)
|+|||++.++. +||+|||+++....... ......||.+|+||| ..+ +...+.|+.
T Consensus 134 p~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 213 (298)
T 1csn_A 134 PDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLR 213 (298)
T ss_dssp GGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHc
Confidence 89999988876 99999999998754422 234677999999999 222 222333331
Q ss_pred ccCCCcccc-----c----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 749 TSDPHITLT-----Y----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 749 ~~~~~~~~~-----~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+..... + +...................+.+++..|++.+|++||++.+|++.|+++
T Consensus 214 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~ 281 (298)
T 1csn_A 214 GSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV 281 (298)
T ss_dssp SSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred CCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHH
Confidence 111111000 0 0000000000000011234577888899999999999999999999987
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-12 Score=136.40 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=65.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CC----cchHHHHhc---------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HP----QEILSLFSS---------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~----~~~l~~~~~---------~~~~--~~~ 755 (818)
|+|||++.++.+||+|||+++.............||++|+|||. .+ ....+.|+. ...+ ...
T Consensus 165 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~ 244 (298)
T 2zv2_A 165 PSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER 244 (298)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence 89999999999999999999987654444456689999999991 11 112334432 1111 111
Q ss_pred ccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... +......... .......+.+++..|++.+|++||++.||++
T Consensus 245 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 245 IMCLHSKIKSQALEFPD---QPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HHHHHHHHHHCCCCCCS---SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHhcccCCCCC---ccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 111 1111111111 1112234567778999999999999999864
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-12 Score=134.80 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=71.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCC----ccccccccceeCCC---CC---Cc-c---hHHHHhccc---------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN----RTLIAGTYRYIAPA---KH---PQ-E---ILSLFSSTS--------- 750 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~----~~~~~gt~gy~aPE---~~---~~-~---~l~~~~~~~--------- 750 (818)
|+|||++.++++||+|||+|+........ .....||.+|+||| .. +. . ..+.|+...
T Consensus 170 p~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~ 249 (337)
T 3mdy_A 170 SKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRC 249 (337)
T ss_dssp GGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTB
T ss_pred hHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhcc
Confidence 89999999999999999999877543221 23567999999999 11 11 0 123343110
Q ss_pred ----------CCCcc----------cccee-cccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 ----------DPHIT----------LTYIL-DQRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ----------~~~~~----------~~~~~-d~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+... ..+.+ ...+..... ....++...+.+++..|++.+|++||++.||++.|+++
T Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l 329 (337)
T 3mdy_A 250 VSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKM 329 (337)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred CcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHH
Confidence 00000 00000 011111110 01225667788999999999999999999999999987
Q ss_pred CC
Q 003465 808 PY 809 (818)
Q Consensus 808 ~~ 809 (818)
..
T Consensus 330 ~~ 331 (337)
T 3mdy_A 330 SE 331 (337)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-12 Score=138.59 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=55.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCC------------ccccccccceeCCCCC------C-cchHHHHhc------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN------------RTLIAGTYRYIAPAKH------P-QEILSLFSS------ 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~------------~~~~~gt~gy~aPE~~------~-~~~l~~~~~------ 748 (818)
|+|||++.++.+||+|||+++........ .....||++|+|||.. + +...+.|+.
T Consensus 166 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~e 245 (337)
T 3ll6_A 166 VENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYL 245 (337)
T ss_dssp GGGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHH
T ss_pred cccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHH
Confidence 88999999999999999999877543211 1245699999999921 1 112333321
Q ss_pred -----ccCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 749 -----TSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 749 -----~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+......++++....... .......+.+++..|++.+|++||++.||++.|+.+
T Consensus 246 l~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~ 306 (337)
T 3ll6_A 246 LCFRQHPFEDGAKLRIVNGKYSIPP---HDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEI 306 (337)
T ss_dssp HHHSSCCC------------CCCCT---TCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred HHhCCCCCcchhHHHhhcCcccCCc---ccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11112222233333332221 111122355677899999999999999999999988
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.8e-12 Score=136.81 Aligned_cols=43 Identities=30% Similarity=0.326 Sum_probs=37.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.+.......+..+||.+|+|||
T Consensus 140 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE 182 (346)
T 1ua2_A 140 PNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPE 182 (346)
T ss_dssp GGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHH
T ss_pred HHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCch
Confidence 8999999999999999999998755444455678999999999
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=138.22 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=63.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCCcc-hHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~~~~--~ 754 (818)
|+||++++++.+||+|||+++....... ......||++|+||| ..+.+ ..+.|+. ...+. .
T Consensus 175 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~ 254 (333)
T 1mqb_A 175 ARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL 254 (333)
T ss_dssp GGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred hheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC
Confidence 8999999999999999999997754322 223455788999999 22222 2233321 11111 1
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++......+...+.+......+.+++..|++.+|++||+|.+|++.|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 307 (333)
T 1mqb_A 255 SNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 307 (333)
T ss_dssp CHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111111111100011223344567788899999999999999999999887
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=135.09 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=70.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHh---------c-ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFS---------S-TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~---------~-~~~~--~~~~ 756 (818)
|+||+++.++.+||+|||+++....... ......||++|+||| ...+...+.|+ . ...+ ....
T Consensus 139 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~ 218 (288)
T 3kfa_A 139 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL 218 (288)
T ss_dssp GGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred cceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 8999999999999999999987654432 234556788999999 22222222332 1 1111 1111
Q ss_pred c---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 T---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
. +.+........ +......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 219 ~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~ 269 (288)
T 3kfa_A 219 SQVYELLEKDYRMER---PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269 (288)
T ss_dssp GGHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCC---CCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHH
Confidence 1 11112211111 222334567788899999999999999999999876
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=144.19 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=70.2
Q ss_pred cccccc---CCCCcccccccccceeccCCCCC-------ccccccccceeCCC---CCCcc-hHHHHhcc---------c
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSSN-------RTLIAGTYRYIAPA---KHPQE-ILSLFSST---------S 750 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~~-------~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~ 750 (818)
|+|||+ |.++.+||+|||+++........ .....||.+|+||| ..+.+ ..+.|+.. .
T Consensus 131 P~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~ 210 (483)
T 3sv0_A 131 PDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGS 210 (483)
T ss_dssp GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred cceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 899999 68999999999999987544221 23678999999999 22222 23334321 1
Q ss_pred CCCccc---------cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 DPHITL---------TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~~~~~~---------~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+.... ..+.+..+..............+.+++..|++.+|++||+|.+|++.|+++
T Consensus 211 ~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l 276 (483)
T 3sv0_A 211 LPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL 276 (483)
T ss_dssp CTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred CCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 111100 000111110000000011234577888999999999999999999999887
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-12 Score=133.91 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=50.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CCcc-hHHHHh---------cc--cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HPQE-ILSLFS---------ST--SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~~~-~l~~~~---------~~--~~~~~~~~~ 758 (818)
|+||+++.++.+||+|||+++.............||.+|+|||. .+.. ..+.|+ .. .+......+
T Consensus 140 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 219 (278)
T 3cok_A 140 LSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN 219 (278)
T ss_dssp GGGEEECTTCCEEECCCTTCEECC----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-
T ss_pred HHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHH
Confidence 89999999999999999999987544333345679999999991 1111 112222 11 111111222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+........ ..+......+.+++..|++.+|++||++.+|++
T Consensus 220 ~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 220 TLNKVVLADY-EMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp ----CCSSCC-CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHhhccc-CCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 2222111111 111112334567888999999999999999986
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-12 Score=133.25 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc----------ccC--CCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSD--PHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~--~~~~~~ 757 (818)
|+||++++++.+||+|||+++..... .....|+.+|+||| .......+.|+. ... ......
T Consensus 145 p~Nil~~~~~~~~l~Dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~ 221 (278)
T 1byg_A 145 ARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK 221 (278)
T ss_dssp GGGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG
T ss_pred cceEEEeCCCcEEEeecccccccccc---ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 89999999999999999999865432 22346789999999 222222223321 111 111111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
++......+.....+......+.+++..|++.+|++||++.|+++.|++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~ 272 (278)
T 1byg_A 222 DVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK 272 (278)
T ss_dssp GHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence 221111111000112223445667888999999999999999999999874
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-12 Score=135.28 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=68.6
Q ss_pred ccccccCCCCcccccccccceeccCCC----CCccccccccceeCCC----CCCcchHHHHhc----------cc--CCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS----SNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TS--DPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~----~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~--~~~ 753 (818)
|+||++++++.+||+|||+++...... ...+...||++|+||| ...+...+.|+. .. +..
T Consensus 156 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~ 235 (298)
T 3f66_A 156 ARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 235 (298)
T ss_dssp GGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred hheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 899999999999999999998764332 1234567889999999 222222233321 11 111
Q ss_pred ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 754 ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 754 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....++............+......+.+++..|++.+|++||++.|++++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~ 289 (298)
T 3f66_A 236 VNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 289 (298)
T ss_dssp SCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 111111111111110001112234567788899999999999999999999987
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-12 Score=134.28 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=60.8
Q ss_pred ccccccCC--------CCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCC
Q 003465 694 FNNILLNS--------EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDP 752 (818)
Q Consensus 694 ~~NILLd~--------~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~ 752 (818)
|+|||++. ++.+||+|||+++...... .....||.+|+||| ...+...+.|+. ...+
T Consensus 136 p~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p 213 (271)
T 3dtc_A 136 SSNILILQKVENGDLSNKILKITDFGLAREWHRTT--KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP 213 (271)
T ss_dssp GGGEEESSCCSSSCCSSCCEEECCCCC---------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCT
T ss_pred hHHEEEecccccccccCcceEEccCCccccccccc--ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 79999996 7789999999998764332 23457999999999 222222333321 1111
Q ss_pred Cc--cc----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 753 HI--TL----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 753 ~~--~~----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.. .. ..+......... +......+.+++..|++.+|++||++.||++.|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 214 FRGIDGLAVAYGVAMNKLALPI---PSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp TTTSCHHHHHHHHHTSCCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred CCCCCHHHHHHhhhcCCCCCCC---CcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 11 00 001111111111 222334567788899999999999999999999864
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-12 Score=137.21 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=69.3
Q ss_pred ccccccCCCCc-----ccccccccceeccCCCC-------CccccccccceeCCC---CCCcc-hHHHHhc---------
Q 003465 694 FNNILLNSEFE-----AFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHPQE-ILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILLd~~~~-----~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~~~-~l~~~~~--------- 748 (818)
|+|||++.++. +||+|||+|+....... .....+||++|+||| ..+.+ ..+.|+.
T Consensus 133 p~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~ 212 (330)
T 2izr_A 133 PENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLR 212 (330)
T ss_dssp GGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhc
Confidence 89999999988 99999999998754322 124678999999999 22222 2333431
Q ss_pred ccCCCc--cccce---ecccCCCcCccchHH-----HHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 749 TSDPHI--TLTYI---LDQRISPPKKQKIVQ-----DIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 749 ~~~~~~--~~~~~---~d~~l~~~~~~~~~~-----~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+.. ...++ +........ ..+.+ .. .+.+++..|++.+|.+||++.+|++.|+++
T Consensus 213 g~~Pf~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~ 279 (330)
T 2izr_A 213 GSLPWQGLKADTLKERYQKIGDTKR-ATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDL 279 (330)
T ss_dssp SSCTTTTCCCSSHHHHHHHHHHHHH-HSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred CCCCccccccccHHHHHHHHHhhhc-cCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 111111 00000 000000000 00111 12 677888899999999999999999999866
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-12 Score=136.65 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=69.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCC-cchHHHHhcc---------cCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHP-QEILSLFSST---------SDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~---------~~~~~--- 754 (818)
|+||++++++.+||+|||+++....... ......|+..|+||| ..+ +...+.|+.. ..+..
T Consensus 173 p~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~ 252 (326)
T 2w1i_A 173 TRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP 252 (326)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH
T ss_pred cceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCH
Confidence 8999999999999999999998755432 123456888999999 111 1122223211 00000
Q ss_pred ------------------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 755 ------------------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 755 ------------------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.+.+.+....... .+......+.+++..|++.+|++||++.||++.|+++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~ 321 (326)
T 2w1i_A 253 AEFMRMIGNDKQGQMIVFHLIELLKNNGRLP---RPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 321 (326)
T ss_dssp HHHHHHHCTTCCTHHHHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhHHHHHHHhhcCCCCC---CCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 0001111111111 12223455677888999999999999999999998763
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-12 Score=134.84 Aligned_cols=112 Identities=13% Similarity=0.242 Sum_probs=67.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||+++.++.+||+|||+++....... ......||++|+||| .......+.|+. ...+. ...
T Consensus 141 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~ 220 (281)
T 3cc6_A 141 VRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN 220 (281)
T ss_dssp GGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG
T ss_pred cceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh
Confidence 8999999999999999999987654322 234556889999999 222222223321 11111 111
Q ss_pred ccee---cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 757 TYIL---DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 757 ~~~~---d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.++. ........ +......+.+++..|++.+|++||++.||++.|+.+.
T Consensus 221 ~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~ 272 (281)
T 3cc6_A 221 KDVIGVLEKGDRLPK---PDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVY 272 (281)
T ss_dssp GGHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence 1111 11111111 1122345667888999999999999999999998773
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-12 Score=139.31 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=69.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhcc---------cCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~~--- 754 (818)
|+|||++.++.+||+|||+++....... ......||..|+||| ...+...+.|+.. ..+..
T Consensus 162 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~ 241 (318)
T 3lxp_A 162 ARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPP 241 (318)
T ss_dssp GGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH
T ss_pred hheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccc
Confidence 8999999999999999999998754432 234566889999999 1111122333211 11000
Q ss_pred -----------------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 -----------------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 -----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+.++....... +......+.+++..|++.+|++||++.||++.|+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l 308 (318)
T 3lxp_A 242 TKFLELIGIAQGQMTVLRLTELLERGERLPR---PDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTV 308 (318)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred hhhhhhhcccccchhHHHHHHHHhcccCCCC---CccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 00111111111111 222334567788899999999999999999999987
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-12 Score=140.47 Aligned_cols=155 Identities=19% Similarity=0.145 Sum_probs=98.1
Q ss_pred Hhhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc--cchhhhhHhhh----------------------------
Q 003465 647 TEDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR--SAFFKSFQNEA---------------------------- 691 (818)
Q Consensus 647 t~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~--~~~~~~f~~E~---------------------------- 691 (818)
.++|.....+| |.||+|.. .+|+.||+|.+.... ....+.+.+|+
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~ 89 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF 89 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence 45566666777 99999984 579999999654432 22334566776
Q ss_pred -------------------------------------------cc---ccccccC---CCCcccccccccceeccCCCCC
Q 003465 692 -------------------------------------------HV---FNNILLN---SEFEAFFGNFGVARLLNSDSSN 722 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd---~~~~~ki~DFGla~~~~~~~~~ 722 (818)
|+ |+|||++ .++.+||+|||+|+........
T Consensus 90 E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~ 169 (444)
T 3soa_A 90 DLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA 169 (444)
T ss_dssp CCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCB
T ss_pred EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCce
Confidence 22 8999999 4678999999999887655544
Q ss_pred ccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Cccccc----eecccCCCcCccchHHHHHHHHHHH
Q 003465 723 RTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HITLTY----ILDQRISPPKKQKIVQDIALASIVA 783 (818)
Q Consensus 723 ~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la 783 (818)
....+||++|+||| ..+.+ ..+.|+. ...+ .....+ +......... +........+.+++
T Consensus 170 ~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li 248 (444)
T 3soa_A 170 WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPS-PEWDTVTPEAKDLI 248 (444)
T ss_dssp CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCT-TTTTTSCHHHHHHH
T ss_pred eecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCc-cccccCCHHHHHHH
Confidence 56678999999999 22222 3344432 1111 111111 1111111111 11112234456777
Q ss_pred HhccCCCCCCCCChHHHHH
Q 003465 784 LACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 784 ~~C~~~~p~~RP~m~~V~~ 802 (818)
..|++.||++||++.|+++
T Consensus 249 ~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 249 NKMLTINPSKRITAAEALK 267 (444)
T ss_dssp HHHSCSSTTTSCCHHHHHH
T ss_pred HHHcCCChhHCCCHHHHhc
Confidence 8999999999999999986
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.4e-12 Score=134.11 Aligned_cols=43 Identities=30% Similarity=0.325 Sum_probs=29.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++.+||+|||+++.............||.+|+|||
T Consensus 130 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE 172 (311)
T 4agu_A 130 PENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPE 172 (311)
T ss_dssp GGGEEECTTSCEEECCCTTCEECC------------GGGCCHH
T ss_pred hhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChH
Confidence 8999999999999999999998765444445668999999999
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-12 Score=138.51 Aligned_cols=111 Identities=19% Similarity=0.256 Sum_probs=63.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHh---------c-ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFS---------S-TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~---------~-~~~~~--~~ 755 (818)
|+|||++.++.+||+|||+++....... ......||+.|+||| ...+...+.|+ . ...+. ..
T Consensus 145 p~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~ 224 (327)
T 3lzb_A 145 ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP 224 (327)
T ss_dssp GGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred HHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence 8999999999999999999998754322 234456788999999 22222223332 1 11111 11
Q ss_pred c---cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 L---TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~---~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
. .+.+........ +......+.+++..|++.+|++||++.|+++.|+++
T Consensus 225 ~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 276 (327)
T 3lzb_A 225 ASEISSILEKGERLPQ---PPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKM 276 (327)
T ss_dssp GGGHHHHHHTTCCCCC---CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCC---CccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 1 111112111111 222344567788899999999999999999999987
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-12 Score=139.91 Aligned_cols=113 Identities=13% Similarity=0.221 Sum_probs=70.4
Q ss_pred ccccccCCCCcccccccccceeccCCC--------CCccccccccceeCCC--CC--------Cc-chHHHHhcc-----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--------SNRTLIAGTYRYIAPA--KH--------PQ-EILSLFSST----- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--------~~~~~~~gt~gy~aPE--~~--------~~-~~l~~~~~~----- 749 (818)
|+|||++.++.+||+|||+++.+.... ......+||.+|+||| .. +. ...+.|+..
T Consensus 148 p~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~e 227 (336)
T 3g2f_A 148 SRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWE 227 (336)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHH
Confidence 899999999999999999999775321 1123567999999999 21 11 122334211
Q ss_pred -------cCCCccccce-------------------------ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 750 -------SDPHITLTYI-------------------------LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 750 -------~~~~~~~~~~-------------------------~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
.++.....+. ..+.+.... .........+.+++..|++.+|++||++
T Consensus 228 ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~Rps~ 306 (336)
T 3g2f_A 228 IFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAW-KENSLAVRSLKETIEDCWDQDAEARLTA 306 (336)
T ss_dssp HHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTC-CCCSHHHHHHHHHHHHHSCSSGGGSCCH
T ss_pred HHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCccc-ccccchHHHHHHHHHHHhcCChhhCcch
Confidence 1111100000 001111111 1122345568889999999999999999
Q ss_pred HHHHHHHccC
Q 003465 798 QRVSQEFLKF 807 (818)
Q Consensus 798 ~~V~~~L~~~ 807 (818)
.||+++|+++
T Consensus 307 ~e~l~~L~~l 316 (336)
T 3g2f_A 307 QXAEERMAEL 316 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-12 Score=138.95 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=60.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC--------------CCcc-hHHHHhc--------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK--------------HPQE-ILSLFSS-------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~--------------~~~~-~l~~~~~-------- 748 (818)
|+|||++ ++.+||+|||+++....... .....+||++|+|||. .+.+ ..+.|+.
T Consensus 136 p~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell 214 (343)
T 3dbq_A 136 PANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMT 214 (343)
T ss_dssp GGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHH
T ss_pred cceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHH
Confidence 8999997 57799999999998754432 2345689999999991 1111 3334432
Q ss_pred -ccCCCcc-------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 749 -TSDPHIT-------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 749 -~~~~~~~-------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
...+... ...++++...... +......+.+++..|++.+|++||+|.||++.
T Consensus 215 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 215 YGKTPFQQIINQISKLHAIIDPNHEIEF---PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp HSSCTTTTCCSHHHHHHHHHCTTSCCCC---CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hCCCcchhhhhHHHHHHHHhcCCcccCC---cccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 1111111 1122232222222 11112345677789999999999999999853
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-12 Score=137.17 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=58.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Ccc--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HIT--L 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~--~ 756 (818)
|+||+++.++.+||+|||+++.............||.+|+||| ..+.+ ..+.|+.. ..+ ... .
T Consensus 164 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 243 (310)
T 2wqm_A 164 PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL 243 (310)
T ss_dssp GGGEEECTTSCEEECCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCH
T ss_pred HHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhH
Confidence 8999999999999999999987755443344567999999999 22222 23333211 111 100 0
Q ss_pred cce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.++ ......... .......+.+++..|++.||++||++.+|++.|+++
T Consensus 244 ~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l 295 (310)
T 2wqm_A 244 YSLCKKIEQCDYPPLP---SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRM 295 (310)
T ss_dssp HHHHHHHHTTCSCCCC---TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCc---ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 000 001111100 111233466778899999999999999999999988
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-12 Score=136.87 Aligned_cols=116 Identities=19% Similarity=0.283 Sum_probs=63.2
Q ss_pred ccccccCCCCcccccccccceeccCC--CCCccccccccceeCCC------CCCcc-hHHHHhc---------ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD--SSNRTLIAGTYRYIAPA------KHPQE-ILSLFSS---------TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~--~~~~~~~~gt~gy~aPE------~~~~~-~l~~~~~---------~~~~~~~ 755 (818)
|+|||++.++.+||+|||+++..... ........||.+|+||| ..+.+ ..+.|+. ...+...
T Consensus 148 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~ 227 (289)
T 3og7_A 148 SNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN 227 (289)
T ss_dssp GGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSS
T ss_pred cceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccc
Confidence 89999999999999999999876432 22234567999999999 11211 2333321 1111110
Q ss_pred ------ccceec-ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 756 ------LTYILD-QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 756 ------~~~~~d-~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
..+.+. .............+...+.+++..|++.+|++||++.+|+++|+++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 228 INNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp CCCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred cchHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 011111 111111101112334567778889999999999999999999998753
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.25 E-value=7e-10 Score=121.30 Aligned_cols=331 Identities=12% Similarity=0.103 Sum_probs=183.3
Q ss_pred CCCCcCCCC-CCcEEEcCCCCCcccCCccccCCCcCceecccCcc---cccCCCCCCCCCCCCcEEECcCCCCCCCCccc
Q 003465 93 DQFNFSCFP-NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNN---LTGTIPSKLGNLNNLVELYLSRSNLNGPIPST 168 (818)
Q Consensus 93 ~~~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 168 (818)
...+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++......
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 444577774 5888888643 555556678888888888887663 44344567777888887777554 33344456
Q ss_pred cCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcce
Q 003465 169 LGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN 248 (818)
Q Consensus 169 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 248 (818)
|..+.+|+.+.+..+ +.......+..+.+|+.+.+..+ ++..-...|.+ .+|+.+.+..+-. ......+..+..++
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccc
Confidence 777788888887643 33234456677778888877654 33333344443 5677777765432 23345566666676
Q ss_pred EEEccCCCCCCCCCccc-cCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCC
Q 003465 249 SLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327 (818)
Q Consensus 249 ~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 327 (818)
......+..... ...+ .......... ..+.....+..+.+.. .+.......|..+..|+.+.+..+
T Consensus 209 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 209 TITSDSESYPAI-DNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp EEEECCSSSCBS-SSCEEEECTTSCEEE-----------EECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT
T ss_pred eecccccccccc-cceeecccccccccc-----------cccccccccceEEcCC-cceEcccceeeecccccEEecccc
Confidence 666554433211 1100 0000000000 0011122233333321 111222345666666777766544
Q ss_pred cCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCc
Q 003465 328 QINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPS 407 (818)
Q Consensus 328 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 407 (818)
... .....+.++++|+.+.+.. .+.......|.++.+|+.++|..+ ++......|.+|.+|+.+.+..+ ++..-..
T Consensus 276 ~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 276 VVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp CCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred cce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 322 3334566677777777753 344444566777777887777654 44444567778888888888544 5544456
Q ss_pred cccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcC
Q 003465 408 ELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFI 449 (818)
Q Consensus 408 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 449 (818)
.|.+|.+|+.+++.++.... ..+..+..|+.+.+..|.+
T Consensus 352 aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 77788888888887775432 3455667777777766543
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=7e-12 Score=132.40 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=35.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++..... ...+..+||.+|+|||
T Consensus 148 p~Nil~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE 189 (308)
T 3g33_A 148 PENILVTSGGTVKLADFGLARIYSYQ-MALTPVVVTLWYRAPE 189 (308)
T ss_dssp TTTEEECTTSCEEECSCSCTTTSTTC-CCSGGGGCCCSSCCHH
T ss_pred HHHEEEcCCCCEEEeeCccccccCCC-cccCCccccccccCch
Confidence 89999999999999999999876433 2335578999999999
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-12 Score=135.81 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=65.9
Q ss_pred ccccccCCCCcccccccccceeccCCC------------CCccccccccceeCCC---C-CCcchHHHHhccc-------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS------------SNRTLIAGTYRYIAPA---K-HPQEILSLFSSTS------- 750 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~------------~~~~~~~gt~gy~aPE---~-~~~~~l~~~~~~~------- 750 (818)
|+|||++.++.+||+|||+++...... ......+||++|+||| . ..+...+.|+...
T Consensus 192 p~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 271 (332)
T 3qd2_B 192 PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLY 271 (332)
T ss_dssp GGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHS
T ss_pred cccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHH
Confidence 899999999999999999999875442 1224467999999999 2 2222334443211
Q ss_pred --CCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 751 --DPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 751 --~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+.....++...................+.+++..|++.+|++||++.|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 272 SFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred cCCChhHHHHHHHHhhccCCCcccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 1110001111111111111112233445677888999999999999999986
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-12 Score=144.09 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+|.++.+||+|||+|+............+||++|+||| ..+ +...+.|+.. ..+ .....+
T Consensus 277 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~ 356 (446)
T 4ejn_A 277 LENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK 356 (446)
T ss_dssp GGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH
Confidence 8999999999999999999987544444455678999999999 222 2233344321 111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+.+....... ..+......+.+++..|++.||++|| ++.|+++
T Consensus 357 ~~~~i~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 357 LFELILMEEI-RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHhCCC-CCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 1111110000 00111223456677899999999999 9999874
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-12 Score=133.01 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=36.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++............+||.+|+|||
T Consensus 136 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE 178 (317)
T 2pmi_A 136 PQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPD 178 (317)
T ss_dssp GGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHH
T ss_pred hHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCch
Confidence 8999999999999999999998755444445567999999999
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.1e-13 Score=141.66 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=59.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||+|.++++||+|||+|+............+||++|+||| ...+...+.|+.. .+......+
T Consensus 152 p~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~ 231 (353)
T 3txo_A 152 LDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD 231 (353)
T ss_dssp GGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999986544444455678999999999 1111133444321 111111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh------HHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM------QRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m------~~V~~ 802 (818)
+....+.... ..+......+..+...|++.+|++||++ .|+.+
T Consensus 232 ~~~~i~~~~~-~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 232 LFEAILNDEV-VYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp HHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred HHHHHHcCCC-CCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 1111111100 0011112345567779999999999998 66653
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-12 Score=135.01 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=65.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~~~ 757 (818)
|+|||+|.++.+||+|||+++....... ......||++|+||| ..+.+ ..+.|+. ...+ .....
T Consensus 139 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~ 218 (294)
T 4eqm_A 139 PQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV 218 (294)
T ss_dssp GGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH
T ss_pred HHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH
Confidence 8999999999999999999987654322 234567999999999 22211 2233321 1111 11111
Q ss_pred c----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-ChHHHHHHHccCCC
Q 003465 758 Y----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-TMQRVSQEFLKFPY 809 (818)
Q Consensus 758 ~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-~m~~V~~~L~~~~~ 809 (818)
+ .+.............+....+.+++.+|++.+|++|| ++.++.+.|+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 219 SIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp HHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred HHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 1 0111111000000112234567788899999999998 89999999998843
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-12 Score=135.59 Aligned_cols=114 Identities=12% Similarity=0.219 Sum_probs=64.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCcc-hHHHHh---------c-cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQE-ILSLFS---------S-TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~~-~l~~~~---------~-~~--~~~~~ 755 (818)
|+||++++++.+||+|||+++...... .......|++.|+||| ..+.+ ..+.|+ . .. +....
T Consensus 175 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 254 (313)
T 3brb_A 175 ARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ 254 (313)
T ss_dssp GGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred cceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCC
Confidence 899999999999999999998765432 1234456889999999 22222 223332 1 11 11111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+....+.....+......+.+++..|++.+|++||++.++++.|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l 306 (313)
T 3brb_A 255 NHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKL 306 (313)
T ss_dssp GGGHHHHHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1122111111111011223345677788899999999999999999999876
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-12 Score=132.83 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=70.2
Q ss_pred ccccccCCCCcccccccccceeccCC----CCCccccccccceeCCC---C-CCcchHHHHhc----------cc--CCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD----SSNRTLIAGTYRYIAPA---K-HPQEILSLFSS----------TS--DPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~----~~~~~~~~gt~gy~aPE---~-~~~~~l~~~~~----------~~--~~~ 753 (818)
|+|||+++++.+||+|||+++..... ........||.+|+||| . ..+...+.|+. .. +..
T Consensus 152 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~ 231 (298)
T 3pls_A 152 ARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH 231 (298)
T ss_dssp GGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT
T ss_pred cceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc
Confidence 89999999999999999999866432 12234567899999999 2 22222333321 11 111
Q ss_pred ccccce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 754 ITLTYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 754 ~~~~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....++ +........ +......+.+++..|++.+|++||++.+++++|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~ 285 (298)
T 3pls_A 232 IDPFDLTHFLAQGRRLPQ---PEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQI 285 (298)
T ss_dssp SCGGGHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhhcCCCCCC---CccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 111111 111111111 122234566788899999999999999999999987
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-12 Score=138.41 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=70.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+|||+++++.+||+|||+++........ .....||++|+||| ...+...+.|+. ...+. ..
T Consensus 192 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 271 (333)
T 2i1m_A 192 ARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGIL 271 (333)
T ss_dssp GGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred cceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccc
Confidence 89999999999999999999977544322 23466889999999 222222233321 11111 10
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
...++........ +......+.+++..|++.+|.+||++.||++.|+++.
T Consensus 272 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 325 (333)
T 2i1m_A 272 VNSKFYKLVKDGYQMAQ---PAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQA 325 (333)
T ss_dssp SSHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence 0111111111111 1122345667888999999999999999999998773
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-10 Score=122.38 Aligned_cols=331 Identities=11% Similarity=0.068 Sum_probs=190.3
Q ss_pred CccccCCC-cCceecccCcccccCCCCCCCCCCCCcEEECcCCC---CCCCCccccCCCCCCCEEEccCCCCCCCCccCC
Q 003465 118 PSEIGALS-KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN---LNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTL 193 (818)
Q Consensus 118 ~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 193 (818)
..+|.+++ .|+.+.+..+ ++..-..+|.++.+|+.+.+..|. ++..-..+|..+.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 44676664 5888888754 554556778888888888887654 44333456777777777766544 333334456
Q ss_pred CCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcE
Q 003465 194 GHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVY 273 (818)
Q Consensus 194 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 273 (818)
..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++.....+|.. ..|+.+.+..+... .....+..+.+++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccce
Confidence 66777777777543 33344455666677777766543 22222333332 45666665443221 22334444555555
Q ss_pred EEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcc
Q 003465 274 LSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL 353 (818)
Q Consensus 274 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 353 (818)
.....+.... ....+.. .+.........+.....+..+.+.. .+...-...|.++..|+.+.+..+..
T Consensus 210 ~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 210 ITSDSESYPA-IDNVLYE----------KSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp EEECCSSSCB-SSSCEEE----------ECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC
T ss_pred eccccccccc-ccceeec----------ccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc
Confidence 5444333221 1100000 0000000000111223334444432 23323345688899999999987654
Q ss_pred cccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccc
Q 003465 354 EGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433 (818)
Q Consensus 354 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 433 (818)
. .....|.++++|+.+.+. +.++......|.++.+|+.+.+..+ ++..-...|.+|.+|+.+.+..+ ++..-...|
T Consensus 278 ~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 278 S-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp E-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred e-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence 3 556678899999999996 4555566678999999999999865 65555678999999999999755 664556789
Q ss_pred cCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcC
Q 003465 434 RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRL 479 (818)
Q Consensus 434 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l 479 (818)
.++++|+.+++.++.... ..+.... .|+.+.+..|.+
T Consensus 354 ~~C~~L~~i~~~~~~~~~---~~~~~~~------~L~~i~i~~~~~ 390 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQW---NAISTDS------GLQNLPVAPGSI 390 (394)
T ss_dssp TTCTTCCEEEESSCHHHH---HTCBCCC------CC----------
T ss_pred hCCCCCCEEEECCceeeh---hhhhccC------CCCEEEeCCCCE
Confidence 999999999999875431 1222222 667776665543
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-12 Score=148.55 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=66.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||||+++++||+|||+|+............+||++|+||| ..+.+ ..+.|+.. .+......+
T Consensus 470 p~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~ 549 (674)
T 3pfq_A 470 LDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE 549 (674)
T ss_dssp STTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred hhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHH
Confidence 8999999999999999999997654444556788999999999 23333 44455421 111111112
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh-----HHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM-----QRVS 801 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m-----~~V~ 801 (818)
+....+.... ..+......+.+++..|++.+|++||++ .||.
T Consensus 550 ~~~~i~~~~~-~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~ 596 (674)
T 3pfq_A 550 LFQSIMEHNV-AYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIK 596 (674)
T ss_dssp HHHHHHSSCC-CCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHH
T ss_pred HHHHHHhCCC-CCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHh
Confidence 2211111111 0111122345667779999999999997 5655
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-12 Score=140.19 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=62.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---C-----------CCcc-hHHHHhc--------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---K-----------HPQE-ILSLFSS-------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~-----------~~~~-~l~~~~~-------- 748 (818)
|+|||++ ++.+||+|||+++.+..... .....+||++|+||| . .+.+ ..+.|+.
T Consensus 183 p~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell 261 (390)
T 2zmd_A 183 PANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMT 261 (390)
T ss_dssp GGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHH
Confidence 8999996 57899999999997754322 234568999999999 1 1122 3344432
Q ss_pred -ccCCCc-------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 749 -TSDPHI-------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 749 -~~~~~~-------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.. .+..++++.......... ...+.+++..|++.+|++||++.||++
T Consensus 262 ~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 262 YGKTPFQQIINQISKLHAIIDPNHEIEFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp HSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HCCCcchhhhHHHHHHHHHhCccccCCCCccc---hHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 111111 112233333322221111 234567778999999999999999985
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-12 Score=140.20 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=29.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++.+||+|||+|+..... ...+..+||.+|+|||
T Consensus 192 p~NIll~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE 233 (464)
T 3ttj_A 192 PSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPE 233 (464)
T ss_dssp GGGEEECTTSCEEECCCCCC-----C-CCC----CCCTTCCHH
T ss_pred hHhEEEeCCCCEEEEEEEeeeecCCC-cccCCCcccccccCHH
Confidence 89999999999999999999976543 2345578999999999
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=132.82 Aligned_cols=115 Identities=16% Similarity=0.281 Sum_probs=73.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC--CCC--------cchHHHHh---------cc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA--KHP--------QEILSLFS---------ST- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE--~~~--------~~~l~~~~---------~~- 749 (818)
|+|||+|+++++||+|||+++....... ......||.+|+||| ... +...+.|+ ..
T Consensus 175 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~ 254 (342)
T 1b6c_B 175 SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRC 254 (342)
T ss_dssp GGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhcc
Confidence 8999999999999999999988755432 234567999999999 111 01223332 11
Q ss_pred ---------cCCCcc-------ccc----eecccCCCcCcc--chHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 750 ---------SDPHIT-------LTY----ILDQRISPPKKQ--KIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 750 ---------~~~~~~-------~~~----~~d~~l~~~~~~--~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+... ..+ +....+...... ...++...+.+++..|++.+|++||++.+|++.|+++
T Consensus 255 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i 334 (342)
T 1b6c_B 255 SIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 334 (342)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred CcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence 111100 000 111122221101 1235566788899999999999999999999999987
Q ss_pred C
Q 003465 808 P 808 (818)
Q Consensus 808 ~ 808 (818)
.
T Consensus 335 ~ 335 (342)
T 1b6c_B 335 S 335 (342)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-12 Score=141.72 Aligned_cols=43 Identities=28% Similarity=0.280 Sum_probs=32.1
Q ss_pred ccccccCCCCcccccccccceeccCCC---------------------------CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS---------------------------SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~---------------------------~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++++||+|||+|+...... ...+..+||.+|+|||
T Consensus 184 p~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE 253 (458)
T 3rp9_A 184 PANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPE 253 (458)
T ss_dssp GGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHH
T ss_pred hhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChH
Confidence 899999999999999999999774321 1234567999999999
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-12 Score=134.22 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=70.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCCcc-hHHHHh---------c-ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHPQE-ILSLFS---------S-TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~~~-~l~~~~---------~-~~~~~--~ 754 (818)
|+||++++++.+||+|||+++....... ......||++|+||| ..+.+ ..+.|+ . ...+. .
T Consensus 138 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~ 217 (287)
T 1u59_A 138 ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM 217 (287)
T ss_dssp GGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred hheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC
Confidence 8999999999999999999998754322 223456789999999 11111 222222 1 11111 1
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++......+.....+......+.+++..|++.+|++||++.+|++.|+++
T Consensus 218 ~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 270 (287)
T 1u59_A 218 KGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270 (287)
T ss_dssp CTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111111001100011223345667788899999999999999999999988
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.5e-12 Score=134.71 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=29.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.............||.+|+|||
T Consensus 152 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE 194 (331)
T 4aaa_A 152 PENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPE 194 (331)
T ss_dssp GGGEEECTTSCEEECCCTTC------------CCCCCTTCCHH
T ss_pred hheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcc
Confidence 8999999999999999999987755444445567999999999
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.3e-12 Score=136.46 Aligned_cols=43 Identities=33% Similarity=0.351 Sum_probs=33.3
Q ss_pred ccccccCCCCcccccccccceeccCC---------------------CCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD---------------------SSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~---------------------~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++.+||+|||+|+.+... ....+..+||.+|+|||
T Consensus 137 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE 200 (388)
T 3oz6_A 137 PSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPE 200 (388)
T ss_dssp GGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHH
T ss_pred HHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHH
Confidence 89999999999999999999976431 11234568999999999
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-12 Score=137.05 Aligned_cols=148 Identities=17% Similarity=0.053 Sum_probs=93.4
Q ss_pred hcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh------------------------------------
Q 003465 653 DIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA------------------------------------ 691 (818)
Q Consensus 653 ~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~------------------------------------ 691 (818)
...|| |.||+|.. .+|+.||||.+........++|.+|+
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L 173 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence 34566 89999985 56999999977655444556677776
Q ss_pred ------------------------------------cc---cccccc--CCCCcccccccccceeccCCCCCcccccccc
Q 003465 692 ------------------------------------HV---FNNILL--NSEFEAFFGNFGVARLLNSDSSNRTLIAGTY 730 (818)
Q Consensus 692 ------------------------------------h~---~~NILL--d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~ 730 (818)
|+ |+|||+ ++++.+||+|||+++....... ....+||+
T Consensus 174 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~-~~~~~gt~ 252 (373)
T 2x4f_A 174 FDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK-LKVNFGTP 252 (373)
T ss_dssp HHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB-CCCCCSSC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc-cccccCCC
Confidence 22 899999 6788999999999998754332 33457999
Q ss_pred ceeCCC---CCCcc-hHHHHhc---------c--cCCCcc----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCC
Q 003465 731 RYIAPA---KHPQE-ILSLFSS---------T--SDPHIT----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKP 791 (818)
Q Consensus 731 gy~aPE---~~~~~-~l~~~~~---------~--~~~~~~----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p 791 (818)
+|+||| ....+ ..+.|+. . .+.... +..++........ .........+.++...|++.+|
T Consensus 253 ~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dp 331 (373)
T 2x4f_A 253 EFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLED-EEFQDISEEAKEFISKLLIKEK 331 (373)
T ss_dssp TTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCS-GGGTTSCHHHHHHHHTTSCSSG
T ss_pred cEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCCh-hhhccCCHHHHHHHHHHcCCCh
Confidence 999999 22222 3333431 1 111111 1112222211111 1111223456677889999999
Q ss_pred CCCCChHHHHH
Q 003465 792 KSVPTMQRVSQ 802 (818)
Q Consensus 792 ~~RP~m~~V~~ 802 (818)
++||++.|+++
T Consensus 332 ~~Rps~~e~l~ 342 (373)
T 2x4f_A 332 SWRISASEALK 342 (373)
T ss_dssp GGSCCHHHHHH
T ss_pred hhCCCHHHHhc
Confidence 99999999986
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-12 Score=135.95 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=69.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+||+++.++.+||+|||+++....... ......||.+|+||| ...+...+.|+. ...+ ...
T Consensus 166 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 245 (322)
T 1p4o_A 166 ARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS 245 (322)
T ss_dssp GGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC
T ss_pred cceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC
Confidence 8999999999999999999987644322 123456789999999 222222233321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++............+......+.+++..|++.+|++||++.||++.|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~ 297 (322)
T 1p4o_A 246 NEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 297 (322)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHh
Confidence 1111111111100011122334566788899999999999999999999987
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-12 Score=138.90 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=68.9
Q ss_pred ccccccC--CCCcccccccccceeccCCCC-------CccccccccceeCCC---CC-CcchHHHHhc---------ccC
Q 003465 694 FNNILLN--SEFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TSD 751 (818)
Q Consensus 694 ~~NILLd--~~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~~ 751 (818)
|+|||++ .++.+||+|||+|+.+..... .....+||++|+||| .. .+...+.|+. ...
T Consensus 180 p~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~ 259 (364)
T 3op5_A 180 ASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHL 259 (364)
T ss_dssp GGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 8999999 899999999999988753311 124466999999999 22 2222333331 111
Q ss_pred CCcc------------------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 752 PHIT------------------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 752 ~~~~------------------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+... +.+++++.+.. ......+.+++..|++.+|++||+|.+|++.|+++
T Consensus 260 Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~ 327 (364)
T 3op5_A 260 PWEDNLKDPKYVRDSKIRYRENIASLMDKCFPA------ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG 327 (364)
T ss_dssp TTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCT------TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHhhhhHHHHHHHhccc------ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 1110 00111111100 01134567788899999999999999999999877
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-12 Score=138.45 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||+|.++++||+|||+++............+||+.|+||| ..+.+ ..+.|+.. .+......+
T Consensus 167 p~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~ 246 (373)
T 2r5t_A 167 PENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE 246 (373)
T ss_dssp GGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHH
T ss_pred HHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH
Confidence 8999999999999999999987544444456678999999999 22222 34444321 111111111
Q ss_pred ----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 759 ----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 759 ----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
++...+.... .....+.+++..|++.+|++||++.+.++++
T Consensus 247 ~~~~i~~~~~~~~~-----~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 247 MYDNILNKPLQLKP-----NITNSARHLLEGLLQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp HHHHHHHSCCCCCS-----SSCHHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred HHHHHHhcccCCCC-----CCCHHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence 1222221111 1123455677799999999999986544443
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=131.84 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=65.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---------CCcc-hHHHHhc---------ccCCC-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---------HPQE-ILSLFSS---------TSDPH- 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---------~~~~-~l~~~~~---------~~~~~- 753 (818)
|+|||+++++.+||+|||+++.+.... .....+||++|+|||. .+.+ ..+.|+. ...+.
T Consensus 228 p~NIl~~~~~~ikl~DfG~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~ 306 (365)
T 2y7j_A 228 PENILLDDNMQIRLSDFGFSCHLEPGE-KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFW 306 (365)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred HHHEEECCCCCEEEEecCcccccCCCc-ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCC
Confidence 899999999999999999999875443 2345689999999991 1111 2333431 11111
Q ss_pred -ccccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 -ITLTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 -~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+ +......... +........+.+++..|++.+|++||++.|+++
T Consensus 307 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 307 HRRQILMLRMIMEGQYQFSS-PEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp CSSHHHHHHHHHHTCCCCCH-HHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCC-cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11001 1111111110 001112234667888999999999999999986
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-12 Score=135.99 Aligned_cols=97 Identities=24% Similarity=0.189 Sum_probs=63.5
Q ss_pred chHHHHHHHhhhhhhcccc----CcEEEEEcCCCcEEEEEeccccccc-----------hhhhhHhhh------------
Q 003465 639 AFEEIIRATEDLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSA-----------FFKSFQNEA------------ 691 (818)
Q Consensus 639 ~~~~l~~at~~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~-----------~~~~f~~E~------------ 691 (818)
...++....++|.....+| |.||+|...+|..||||++...... ..+.|.+|+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 3556666777787777787 8999999878999999965432211 114466665
Q ss_pred ----------------------------------------------------------------cc---ccccccCCCCc
Q 003465 692 ----------------------------------------------------------------HV---FNNILLNSEFE 704 (818)
Q Consensus 692 ----------------------------------------------------------------h~---~~NILLd~~~~ 704 (818)
|+ |+|||++.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~ 172 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNND 172 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCC
T ss_pred ceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCC
Confidence 22 89999999999
Q ss_pred ccccccccceeccCCCCCccccccccceeCCC
Q 003465 705 AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 705 ~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
+||+|||+++...... ..+...||.+|+|||
T Consensus 173 ~kl~Dfg~~~~~~~~~-~~~~~~~t~~y~aPE 203 (362)
T 3pg1_A 173 ITICDFNLAREDTADA-NKTHYVTHRWYRAPE 203 (362)
T ss_dssp EEECCTTC----------------CGGGCCHH
T ss_pred EEEEecCccccccccc-ccceecccceecCcH
Confidence 9999999998654332 234567999999999
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-12 Score=137.52 Aligned_cols=111 Identities=16% Similarity=0.232 Sum_probs=70.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||++.++.+||+|||+++....... ......||++|+||| +..+...+.|+. ...+ ...
T Consensus 185 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 264 (334)
T 2pvf_A 185 ARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP 264 (334)
T ss_dssp GGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred cceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC
Confidence 8899999999999999999997754322 234556889999999 211112223321 1111 111
Q ss_pred ccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.. ....... +......+.+++..|++.+|++||++.||++.|+++
T Consensus 265 ~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l 316 (334)
T 2pvf_A 265 VEELFKLLKEGHRMDK---PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 316 (334)
T ss_dssp HHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCC---CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 111111 1111111 122334567788899999999999999999999988
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-12 Score=138.84 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=64.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------c--CCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------S--DPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~--~~~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++............+||++|+||| ..+.+ ..+.|+.. . +......+
T Consensus 146 p~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~ 225 (345)
T 1xjd_A 146 LDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE 225 (345)
T ss_dssp GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred hhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 8999999999999999999987544444456678999999999 22222 34445321 1 11111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChH-HHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQ-RVS 801 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~-~V~ 801 (818)
+......... ..+......+.++...|++.+|++||++. +|.
T Consensus 226 ~~~~i~~~~~-~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 226 LFHSIRMDNP-FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HHHHHHHCCC-CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHHHHhCCC-CCCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 1111000000 00111123455677799999999999997 554
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-12 Score=134.93 Aligned_cols=149 Identities=18% Similarity=0.184 Sum_probs=93.3
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEecccccc---chhhhhHhhh----------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRS---AFFKSFQNEA---------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~---~~~~~f~~E~---------------------------- 691 (818)
+.|.....+| |.||+|.. .+|+.||||.+..... ...++|.+|+
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4466666777 89999984 6799999997653321 2234577776
Q ss_pred -------------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccc
Q 003465 692 -------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||+++++.+||+|||+++..... ..
T Consensus 134 e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~----~~ 209 (348)
T 1u5q_A 134 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA----NS 209 (348)
T ss_dssp ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB----CC
T ss_pred ecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC----Cc
Confidence 22 89999999999999999999876432 34
Q ss_pred cccccceeCCC------CCCcc-hHHHHhcc---------cCC--Ccccc----ceecccCCCcCccchHHHHHHHHHHH
Q 003465 726 IAGTYRYIAPA------KHPQE-ILSLFSST---------SDP--HITLT----YILDQRISPPKKQKIVQDIALASIVA 783 (818)
Q Consensus 726 ~~gt~gy~aPE------~~~~~-~l~~~~~~---------~~~--~~~~~----~~~d~~l~~~~~~~~~~~~~~~~~la 783 (818)
..||++|+||| ..+.+ ..+.|+.. ..+ ..... .+......... .......+.+++
T Consensus 210 ~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li 286 (348)
T 1u5q_A 210 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQ---SGHWSEYFRNFV 286 (348)
T ss_dssp CCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCC---CTTSCHHHHHHH
T ss_pred ccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCC---CCCCCHHHHHHH
Confidence 57999999999 12222 33344321 111 11100 11111110000 111123455677
Q ss_pred HhccCCCCCCCCChHHHHHH
Q 003465 784 LACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 784 ~~C~~~~p~~RP~m~~V~~~ 803 (818)
..|++.+|++||++.++++.
T Consensus 287 ~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 287 DSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp HHHTCSSGGGSCCHHHHTTC
T ss_pred HHHcccChhhCcCHHHHhhC
Confidence 79999999999999998753
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-12 Score=134.65 Aligned_cols=114 Identities=17% Similarity=0.252 Sum_probs=70.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCCcc-hHHHHh---------c-ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHPQE-ILSLFS---------S-TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~~~-~l~~~~---------~-~~~~--~~~ 755 (818)
|+||++++++.+||+|||+++....... ......||++|+||| ..+.+ ..+.|+ . ...+ ...
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 257 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP 257 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999997754332 234456889999999 12111 222232 1 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+..........+......+.+++..|++.+|++||++.+|++.|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~ 309 (314)
T 2ivs_A 258 PERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM 309 (314)
T ss_dssp GGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1111111000100011222344567788899999999999999999999876
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-12 Score=140.16 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=66.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc--chHHHHhcc-----------cCCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ--EILSLFSST-----------SDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~--~~l~~~~~~-----------~~~~~~~~ 757 (818)
|+|||+|.++.+||+|||+++...... .....+||++|+||| ..+. ...+.|+.. .+......
T Consensus 144 p~NIll~~~~~vkL~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~ 222 (476)
T 2y94_A 144 PENVLLDAHMNAKIADFGLSNMMSDGE-FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVP 222 (476)
T ss_dssp GGGEEECTTCCEEECCCSSCEECCTTC-CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSH
T ss_pred HHHEEEecCCCeEEEeccchhhccccc-cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHH
Confidence 899999999999999999999875433 234567999999999 2221 234444321 11111111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
++......+.. ..+......+.+++..|++.||++||++.||++
T Consensus 223 ~~~~~i~~~~~-~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 223 TLFKKICDGIF-YTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp HHHHHHHTTCC-CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHhcCCc-CCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 11111111110 001111234566778999999999999999986
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-12 Score=136.93 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=62.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||+|.++++||+|||+++............+||++|+||| ..+.+ ..+.|+.. .+......+
T Consensus 149 p~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~ 228 (353)
T 2i0e_A 149 LDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE 228 (353)
T ss_dssp GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHH
Confidence 8999999999999999999987544444455678999999999 22322 34445321 111111111
Q ss_pred ----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 759 ----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 759 ----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
+....... +......+.+++..|++.+|++||++
T Consensus 229 ~~~~i~~~~~~~-----p~~~s~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 229 LFQSIMEHNVAY-----PKSMSKEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp HHHHHHHCCCCC-----CTTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred HHHHHHhCCCCC-----CCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 11211111 11122345667779999999999964
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.8e-12 Score=132.68 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCCc--cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPHI--TLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~~--~~~~ 758 (818)
|+||+++.++.+||+|||+++.............||.+|+||| ..+.+ ..+.|+. ...+.. ...+
T Consensus 147 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 226 (303)
T 3a7i_A 147 AANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMK 226 (303)
T ss_dssp GGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred hheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHH
Confidence 8999999999999999999988765444445668999999999 22221 2233321 111110 0000
Q ss_pred e---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 I---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
+ +........ .......+.+++..|++.+|++||++.+|++.
T Consensus 227 ~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 227 VLFLIPKNNPPTL---EGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp HHHHHHHSCCCCC---CSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred HHHHhhcCCCCCC---ccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 0 000000001 11122346678889999999999999999863
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-12 Score=135.81 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=71.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---------ccccccccceeCCCC---CC----cchHHHHhc---------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---------RTLIAGTYRYIAPAK---HP----QEILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---------~~~~~gt~gy~aPE~---~~----~~~l~~~~~--------- 748 (818)
|+||+++.++.+||+|||+++........ .....||.+|+|||. .+ ....+.|+.
T Consensus 162 p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~ 241 (317)
T 2buj_A 162 PTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMF 241 (317)
T ss_dssp GGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHH
T ss_pred HHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHh
Confidence 89999999999999999999865321110 124568999999991 11 113333431
Q ss_pred ccCCC-------ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCcCc
Q 003465 749 TSDPH-------ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYLDL 812 (818)
Q Consensus 749 ~~~~~-------~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~~~ 812 (818)
...+. ......+........ .......+.+++..|++.+|.+||++.+|++.|+.+.....
T Consensus 242 g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~ 309 (317)
T 2buj_A 242 GEGPYDMVFQKGDSVALAVQNQLSIPQ---SPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAP 309 (317)
T ss_dssp SSCTTHHHHHTTSCHHHHHHCC--CCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCC
T ss_pred CCCChhhhhcccchhhHHhhccCCCCc---cccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCC
Confidence 11111 001111111111111 11223456678889999999999999999999999965543
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.5e-12 Score=136.21 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=37.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++++||+|||+|+............+||++|+|||
T Consensus 181 p~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE 223 (396)
T 4dc2_A 181 LDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPE 223 (396)
T ss_dssp GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHH
T ss_pred HHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCch
Confidence 8999999999999999999987544444456678999999999
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-12 Score=134.48 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=29.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.............||.+|+|||
T Consensus 128 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE 170 (324)
T 3mtl_A 128 PQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPD 170 (324)
T ss_dssp GGGEEECTTCCEEECSSSEEECC------------CGGGCCHH
T ss_pred HHHEEECCCCCEEEccCcccccccCCccccccccCcccccChh
Confidence 8999999999999999999987654444445567999999999
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6e-12 Score=133.76 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=65.8
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCc--chHHHHhcc---------cCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQ--EILSLFSST---------SDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~--~~l~~~~~~---------~~~~--~~ 755 (818)
|+|||++.++.+||+|||+++.+.... ......+||++|+||| ..+. ...+.|+.. ..+. ..
T Consensus 133 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 212 (323)
T 3tki_A 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS 212 (323)
T ss_dssp GGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSC
T ss_pred hHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence 899999999999999999998764332 2234678999999999 2222 123444321 1111 00
Q ss_pred c-----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 L-----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ~-----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
. ..+........ ........+.+++..|++.+|++||++.|+++.
T Consensus 213 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 213 DSCQEYSDWKEKKTYLN---PWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp TTSHHHHHHHTTCTTST---TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred hHHHHHHHHhcccccCC---ccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 0 00011111101 011223445678889999999999999999754
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.6e-12 Score=134.32 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=58.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhcc---------c--CCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSST---------S--DPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~---------~--~~~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++............+||++|+||| ..+ ....+.|+.. . +......+
T Consensus 149 p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~ 228 (327)
T 3a62_A 149 PENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK 228 (327)
T ss_dssp TTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred HHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH
Confidence 8999999999999999999987644444445678999999999 222 2233344321 1 11111111
Q ss_pred ----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 ----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+....... +......+.++...|++.+|++|| ++.|+++
T Consensus 229 ~~~~i~~~~~~~-----p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 229 TIDKILKCKLNL-----PPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp HHHHHHHTCCCC-----CTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred HHHHHHhCCCCC-----CCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 11111111 111223456677799999999999 6667764
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=7e-12 Score=131.42 Aligned_cols=106 Identities=20% Similarity=0.289 Sum_probs=62.6
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCC---CC---CcchHHHHhc---------ccCCCcccc
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH---PQEILSLFSS---------TSDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~---~~~~l~~~~~---------~~~~~~~~~ 757 (818)
|+||+++. ++.+||+|||+++.............||.+|+||| .. .....+.|+. ...+.....
T Consensus 150 p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 229 (295)
T 2clq_A 150 GDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELG 229 (295)
T ss_dssp GGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGS
T ss_pred hhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCC
Confidence 89999998 89999999999998754433344567999999999 11 1122333321 111111000
Q ss_pred c----eec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 Y----ILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~----~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. +.. ....... +......+.+++..|++.+|++||++.++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 230 EPQAAMFKVGMFKVHPEI---PESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp SHHHHHHHHHHHCCCCCC---CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred chhHHHHhhccccccccc---cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0 000 0011111 1122345567788999999999999999985
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-12 Score=133.77 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=68.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCC-cchHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~~--~ 754 (818)
|+||+++.++.+||+|||+++....... ......||++|+||| ..+ +...+.|+. ...+. .
T Consensus 145 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~ 224 (291)
T 1xbb_A 145 ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM 224 (291)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred cceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence 8999999999999999999998754432 123455789999999 211 112222321 11111 1
Q ss_pred cccc---eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTY---ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~---~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+ .+....... .+......+.+++..|++.+|++||++.+|++.|+++
T Consensus 225 ~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 225 KGSEVTAMLEKGERMG---CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp CHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1111 111111111 1222344567788899999999999999999999987
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.4e-12 Score=147.60 Aligned_cols=114 Identities=11% Similarity=0.186 Sum_probs=67.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~ 756 (818)
|+|||+|.++.+||+|||+++....... ..+...||++|+||| ...+...+.|+. ...+ ....
T Consensus 519 p~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~ 598 (656)
T 2j0j_A 519 ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN 598 (656)
T ss_dssp GGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred hHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH
Confidence 8999999999999999999997754322 234556889999999 222223333431 1111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+++.....+...+.+......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 599 ~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~i 649 (656)
T 2j0j_A 599 NDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 649 (656)
T ss_dssp HHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 111110000000011222335667788899999999999999999999876
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=130.30 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=60.6
Q ss_pred ccccccCCCCc-ccccccccceeccCCCCCccccccccceeCCC---C-CCcchHHHHhc---------ccCCCccc---
Q 003465 694 FNNILLNSEFE-AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---K-HPQEILSLFSS---------TSDPHITL--- 756 (818)
Q Consensus 694 ~~NILLd~~~~-~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~-~~~~~l~~~~~---------~~~~~~~~--- 756 (818)
|+|||+++++. +||+|||+++..... .....||.+|+||| . ..+...+.|+. ...+....
T Consensus 133 p~NIll~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~ 209 (307)
T 2eva_A 133 PPNLLLVAGGTVLKICDFGTACDIQTH---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGP 209 (307)
T ss_dssp GGGEEEETTTTEEEECCCCC---------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSS
T ss_pred hhHEEEeCCCCEEEEcccccccccccc---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCcc
Confidence 89999988876 899999999865432 23456999999999 2 22222333321 11111100
Q ss_pred -cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 -TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 -~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.++..........+........+.+++..|++.+|++||+|.+|++.|+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 261 (307)
T 2eva_A 210 AFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 261 (307)
T ss_dssp HHHHHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 000000000000011122234566788899999999999999999999887
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-12 Score=132.90 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=70.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+||++++++.+||+|||+++........ .....||++|+||| ...+...+.|+. ...+. ..
T Consensus 173 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 252 (313)
T 1t46_A 173 ARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP 252 (313)
T ss_dssp GGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred cceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 78999999999999999999987554332 23456889999999 222222233321 11111 11
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....+........ +......+.+++..|++.+|++||++.||+++|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 305 (313)
T 1t46_A 253 VDSKFYKMIKEGFRMLS---PEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305 (313)
T ss_dssp SSHHHHHHHHHTCCCCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred chhHHHHHhccCCCCCC---cccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence 1111122221111 112234566788899999999999999999999876
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-12 Score=133.39 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=27.7
Q ss_pred cccccc-----CCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILL-----NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL-----d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+ ++++.+||+|||+++.........+...||.+|+|||
T Consensus 160 p~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE 207 (329)
T 3gbz_A 160 PQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPE 207 (329)
T ss_dssp GGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHH
T ss_pred HHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHH
Confidence 899999 5666799999999998755444445567899999999
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=6e-12 Score=131.09 Aligned_cols=110 Identities=23% Similarity=0.295 Sum_probs=70.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhccc---------CCCcc----c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSSTS---------DPHIT----L 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~~---------~~~~~----~ 756 (818)
|+||++++++.+||+|||+++....... .....||.+|+||| .......+.|+... .+... .
T Consensus 150 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~ 228 (284)
T 2a19_B 150 PSNIFLVDTKQVKIGDFGLVTSLKNDGK-RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFF 228 (284)
T ss_dssp GGGEEEEETTEEEECCCTTCEESSCCSC-CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHH
T ss_pred HHHEEEcCCCCEEECcchhheecccccc-ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 8999999999999999999998754432 33457999999999 22222333343211 11000 0
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCcC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYLD 811 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~~ 811 (818)
..+.+..+... ....+.+++..|++.+|++||++.|+++.|..++...
T Consensus 229 ~~~~~~~~~~~-------~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~ 276 (284)
T 2a19_B 229 TDLRDGIISDI-------FDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP 276 (284)
T ss_dssp HHHHTTCCCTT-------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred HHhhccccccc-------CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence 01111111111 1123456778999999999999999999999885444
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-12 Score=136.78 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=69.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+|||++.++.+||+|||+++....... ......||.+|+||| ...+...+.|+. ...+. ..
T Consensus 221 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 300 (359)
T 3vhe_A 221 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 300 (359)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccc
Confidence 7899999999999999999997754332 234567999999999 222223333321 11111 11
Q ss_pred ccce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+. +........ +......+.+++..|++.+|++||+|.||++.|+++
T Consensus 301 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 353 (359)
T 3vhe_A 301 IDEEFCRRLKEGTRMRA---PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 353 (359)
T ss_dssp CSHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence 1111 111111111 112234567788899999999999999999999876
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-11 Score=131.04 Aligned_cols=108 Identities=20% Similarity=0.178 Sum_probs=65.2
Q ss_pred ccccccCCCC----cccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cc
Q 003465 694 FNNILLNSEF----EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~----~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~ 754 (818)
|+|||++++. .+||+|||+++...... .....+||++|+||| ..+.+ ..+.|+.. ..+ ..
T Consensus 143 p~NIll~~~~~~~~~vkl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~ 221 (361)
T 2yab_A 143 PENIMLLDKNIPIPHIKLIDFGLAHEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221 (361)
T ss_dssp GGGEEESCTTSSSCCEEECCCSSCEECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred HHHEEEeCCCCCccCEEEEecCCceEcCCCC-ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 8999998877 79999999999875432 234567999999999 22222 34444321 111 11
Q ss_pred cccceecccCCCcC--c-cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 TLTYILDQRISPPK--K-QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~~~~~~d~~l~~~~--~-~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+++........ . ..+......+.+++..|++.||++||++.|+++
T Consensus 222 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 222 TKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp SHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 11111111111111 0 001112234567788999999999999999874
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-12 Score=134.76 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=72.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+|||++.++.+||+|||+++........ .....||++|+||| ...+...+.|+. ...+. ..
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 279 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 279 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence 89999999999999999999977544322 34566889999999 222222333321 11111 11
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCc
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYL 810 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~ 810 (818)
...++........ +......+.+++..|++.+|++||++.+|++.|+.+...
T Consensus 280 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 335 (344)
T 1rjb_A 280 VDANFYKLIQNGFKMDQ---PFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD 335 (344)
T ss_dssp CSHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred cHHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 1111122221111 222344567788899999999999999999999988443
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-11 Score=135.48 Aligned_cols=40 Identities=23% Similarity=0.156 Sum_probs=33.4
Q ss_pred ccccccCCCCc--ccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFE--AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~--~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++. +||+|||+|+..... ....+||.+|+|||
T Consensus 228 p~NILl~~~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~y~aPE 269 (429)
T 3kvw_A 228 PENILLKQQGRSGIKVIDFGSSCYEHQR---VYTYIQSRFYRAPE 269 (429)
T ss_dssp GGGEEESSTTSCCEEECCCTTCEETTCC---CCSSCSCGGGCCHH
T ss_pred HHHeEEccCCCcceEEeecccceecCCc---ccccCCCCCccChH
Confidence 89999999987 999999999865432 23457999999999
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-11 Score=131.82 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=69.9
Q ss_pred ccccccCCCC--cccccccccceeccCCCC-------CccccccccceeCCC---CCC-cchHHHHhc---------ccC
Q 003465 694 FNNILLNSEF--EAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSD 751 (818)
Q Consensus 694 ~~NILLd~~~--~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~ 751 (818)
|+|||++.++ .+||+|||+|+.+..... ......||.+|+||| ..+ +...+.|+. ...
T Consensus 179 p~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~ 258 (345)
T 2v62_A 179 AANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKL 258 (345)
T ss_dssp GGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 8999999888 999999999998743211 124568999999999 222 223333432 111
Q ss_pred CCcc-ccc---e--ecccCCCcCccchH------HHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 752 PHIT-LTY---I--LDQRISPPKKQKIV------QDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 752 ~~~~-~~~---~--~d~~l~~~~~~~~~------~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
+... ... + .............. .....+.+++..|++.+|++||++.+|++.|+.+.
T Consensus 259 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 259 PWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp TTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred CccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 1100 000 0 00000000000000 12236777888999999999999999999999874
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=135.06 Aligned_cols=108 Identities=21% Similarity=0.186 Sum_probs=57.8
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCCC------CCcc-hHHHHhc---------ccCC--
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK------HPQE-ILSLFSS---------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~------~~~~-~l~~~~~---------~~~~-- 752 (818)
|+|||++. ++.+||+|||+|+..... ......+||++|+|||. .+.+ ..+.|+. ...+
T Consensus 267 p~NIll~~~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~ 345 (419)
T 3i6u_A 267 PENVLLSSQEEDCLIKITDFGHSKILGET-SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFS 345 (419)
T ss_dssp GGGEEESSSSSSCCEEECCSSTTTSCC------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred hHhEEEecCCCcceEEEeecccceecCCC-ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence 89999965 455999999999976543 23345789999999993 1211 3344432 1111
Q ss_pred Ccc-ccceecccCCCcC---ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 HIT-LTYILDQRISPPK---KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 ~~~-~~~~~d~~l~~~~---~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... ...+.+....+.. .+........+.+++..|++.+|++||++.|+++
T Consensus 346 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 346 EHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp CCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 111 0111111111111 0001122345677888999999999999999886
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-12 Score=135.02 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=65.9
Q ss_pred ccccccCCCCc---ccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCCC-ccc
Q 003465 694 FNNILLNSEFE---AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDPH-ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~---~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~~-~~~ 756 (818)
|+|||++.+.. +||+|||+++............+||++|+||| ..+.+ ..+.|+.. ..+. ...
T Consensus 158 p~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 237 (351)
T 3c0i_A 158 PHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK 237 (351)
T ss_dssp GGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH
T ss_pred hHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH
Confidence 89999987665 99999999998765544445678999999999 22222 33344321 1111 111
Q ss_pred cc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+ +......... .........+.+++..|++.||++||++.|+++
T Consensus 238 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 238 ERLFEGIIKGKYKMNP-RQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp HHHHHHHHHTCCCCCH-HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCCCCCc-cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 11 1111111110 000112345667888999999999999999974
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-11 Score=130.78 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=35.6
Q ss_pred ccccccCCCCcccccccccceeccCCC----CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS----SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~----~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+|+.+.... ...+...||++|+|||
T Consensus 152 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE 198 (351)
T 3mi9_A 152 AANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPE 198 (351)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHH
T ss_pred HHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCch
Confidence 899999999999999999999875321 2234567999999999
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.5e-12 Score=138.29 Aligned_cols=43 Identities=35% Similarity=0.397 Sum_probs=32.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC----------------------CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----------------------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----------------------~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+|+....... ..+..+||..|+|||
T Consensus 157 p~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE 221 (432)
T 3n9x_A 157 PANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPE 221 (432)
T ss_dssp GGGEEECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHH
T ss_pred HHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHH
Confidence 8999999999999999999998754321 135678999999999
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-11 Score=129.26 Aligned_cols=107 Identities=23% Similarity=0.190 Sum_probs=64.7
Q ss_pred ccccccCCCC----cccccccccceeccCCCCCccccccccceeCCC---CCCc-chHHHHhcc---------cCC--Cc
Q 003465 694 FNNILLNSEF----EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-EILSLFSST---------SDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~----~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~~---------~~~--~~ 754 (818)
|+|||+++++ .+||+|||+++...... ......||++|+||| ..+. ...+.|+.. ..+ ..
T Consensus 142 p~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~ 220 (326)
T 2y0a_A 142 PENIMLLDRNVPKPRIKIIDFGLAHKIDFGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 220 (326)
T ss_dssp GGGEEESCSSSSSCCEEECCCTTCEECCTTS-CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred HHHEEEecCCCCCCCEEEEECCCCeECCCCC-ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence 8999999888 89999999999875432 234567999999999 2222 233444321 111 11
Q ss_pred cccceec----ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 TLTYILD----QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~~~~~~d----~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.+. ....... .........+.+++..|++.+|++||++.|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 221 TKQETLANVSAVNYEFED-EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp SHHHHHHHHHHTCCCCCH-HHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CHHHHHHHHHhcCCCcCc-cccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1111111 1111000 001112234567888999999999999999986
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6e-13 Score=143.69 Aligned_cols=25 Identities=16% Similarity=0.003 Sum_probs=12.3
Q ss_pred hcCCcCCCEEECCCCcCccCCcccc
Q 003465 501 IGNCSGLLNVTLSNNSLDGTIPLEM 525 (818)
Q Consensus 501 ~~~l~~L~~L~Ls~N~l~~~~p~~l 525 (818)
+...++|+.|||++|.++......+
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3344555555555555554433333
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-12 Score=131.08 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=65.5
Q ss_pred ccccccCCCCc--------ccccccccceeccCCCCCccccccccceeCCC---C-CC-cchHHHHhccc----------
Q 003465 694 FNNILLNSEFE--------AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---K-HP-QEILSLFSSTS---------- 750 (818)
Q Consensus 694 ~~NILLd~~~~--------~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~-~~-~~~l~~~~~~~---------- 750 (818)
|+|||++.++. +||+|||+++.... .....||++|+||| . .. +...+.|+...
T Consensus 141 p~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~ 216 (289)
T 4fvq_A 141 AKNILLIREEDRKTGNPPFIKLSDPGISITVLP----KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGD 216 (289)
T ss_dssp GGGEEEEECCBGGGTBCCEEEECCCCSCTTTSC----HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cceEEEecCCcccccccceeeeccCcccccccC----ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCC
Confidence 89999999988 89999999865422 23456899999999 1 21 22333343211
Q ss_pred CCCccc-----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCcCc
Q 003465 751 DPHITL-----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYLDL 812 (818)
Q Consensus 751 ~~~~~~-----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~~~ 812 (818)
.+.... .......... +......+.+++..|++.+|++||++.||++.|+++-.+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~ 278 (289)
T 4fvq_A 217 KPLSALDSQRKLQFYEDRHQL-----PAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL 278 (289)
T ss_dssp CTTTTSCHHHHHHHHHTTCCC-----CCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred CCccccchHHHHHHhhccCCC-----CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence 110000 0000000000 00112235567789999999999999999999999954443
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-12 Score=131.55 Aligned_cols=108 Identities=23% Similarity=0.340 Sum_probs=65.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+||++++++.+||+|||+++.............||.+|+||| .. .....+.|+. ...+ .....+
T Consensus 143 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~ 222 (294)
T 2rku_A 143 LGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE 222 (294)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred hHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999998765444455678999999999 11 1212333321 1111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.......... ..+......+.+++..|++.+|++||++.|+++
T Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 223 TYLRIKKNEY-SIPKHINPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp HHHHHHTTCC-CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHhhccC-CCccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 0000000000 001112234566778999999999999999986
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.5e-12 Score=132.63 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=68.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCC-cchHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~~--~ 754 (818)
|+||+++.++.+||+|||+++....... ......||++|+||| ..+ +...+.|+. ...+. .
T Consensus 149 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~ 228 (291)
T 1u46_A 149 ARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL 228 (291)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred hheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC
Confidence 8999999999999999999998754432 223466889999999 122 112222321 11111 1
Q ss_pred cccceecccCCC-cCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCc
Q 003465 755 TLTYILDQRISP-PKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYL 810 (818)
Q Consensus 755 ~~~~~~d~~l~~-~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~ 810 (818)
...+++...... ...+.+......+.+++..|++.+|++||++.+|++.|+++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 229 NGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp CHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 111111110000 00011222344567788899999999999999999999987543
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-11 Score=131.59 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=70.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+||+++.++.+||+|||+++........ .....||++|+||| ...+...+.|+. ...+. ..
T Consensus 176 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~ 255 (316)
T 2xir_A 176 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 255 (316)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred cceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccc
Confidence 78999999999999999999877544322 23567899999999 222222233321 11111 11
Q ss_pred ccce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+. +........ +......+.+++..|++.+|++||++.||++.|+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 309 (316)
T 2xir_A 256 IDEEFCRRLKEGTRMRA---PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 309 (316)
T ss_dssp CSHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHhccCccCCC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 0110 111111111 1122345667888999999999999999999999873
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-11 Score=128.75 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=61.3
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCCC---CC-cchHHHHh---------cccCCC--cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPAK---HP-QEILSLFS---------STSDPH--ITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE~---~~-~~~l~~~~---------~~~~~~--~~~~ 757 (818)
|+||+++.++.+||+|||+++...... .......||.+|+|||. .+ ....+.|+ ....+. ....
T Consensus 162 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 241 (309)
T 2h34_A 162 PENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS 241 (309)
T ss_dssp GGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH
T ss_pred hHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH
Confidence 899999999999999999998765432 22345679999999991 11 11112222 111111 1100
Q ss_pred ---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-ChHHHHHHHccCCCc
Q 003465 758 ---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-TMQRVSQEFLKFPYL 810 (818)
Q Consensus 758 ---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-~m~~V~~~L~~~~~~ 810 (818)
..+........ .........+.+++..|++.+|++|| ++.++++.|+.+...
T Consensus 242 ~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~ 297 (309)
T 2h34_A 242 VMGAHINQAIPRPS-TVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALAT 297 (309)
T ss_dssp HHHHHHHSCCCCGG-GTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC-
T ss_pred HHHHHhccCCCCcc-ccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHh
Confidence 11111111100 01112233466778899999999999 999999999988433
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-11 Score=133.37 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=68.6
Q ss_pred ccccccCCCC--cccccccccceeccCCCC-------CccccccccceeCCC---C-CCcchHHHHhc---------ccC
Q 003465 694 FNNILLNSEF--EAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---K-HPQEILSLFSS---------TSD 751 (818)
Q Consensus 694 ~~NILLd~~~--~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~-~~~~~l~~~~~---------~~~ 751 (818)
|+|||++.++ .+||+|||+++.+..... ..+...||++|+||| . ..+...+.|+. ...
T Consensus 187 p~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~ 266 (352)
T 2jii_A 187 AENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFL 266 (352)
T ss_dssp GGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC
Confidence 8999999998 999999999987753311 124458999999999 2 22222333321 111
Q ss_pred CCccc----cceec------ccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 752 PHITL----TYILD------QRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 752 ~~~~~----~~~~d------~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.... ..+.. ........ .........+.+++..|++.+|++||++.+|+++|+++
T Consensus 267 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 334 (352)
T 2jii_A 267 PWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEAL 334 (352)
T ss_dssp TTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred CcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHH
Confidence 11100 00000 00000000 00001134566788899999999999999999999988
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.6e-12 Score=137.74 Aligned_cols=99 Identities=8% Similarity=-0.053 Sum_probs=62.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC----------Cc----chHHHHhc-----------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH----------PQ----EILSLFSS----------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~----------~~----~~l~~~~~----------- 748 (818)
|+|||+|.++.+||+|||+++..... ....+| ++|+|||.. .. ...+.|+.
T Consensus 239 p~NILl~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~ 314 (413)
T 3dzo_A 239 PVDIVLDQRGGVFLTGFEHLVRDGAS---AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCAD 314 (413)
T ss_dssp GGGEEECTTCCEEECCGGGCEETTEE---ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSS
T ss_pred cceEEEecCCeEEEEeccceeecCCc---cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCC
Confidence 99999999999999999999876433 344567 999999921 11 13334431
Q ss_pred ccCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHH
Q 003465 749 TSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVS 801 (818)
Q Consensus 749 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~ 801 (818)
..+......+..+..+.... .....+.+++..|++.+|++||++.+++
T Consensus 315 ~Pf~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 315 LPNTDDAALGGSEWIFRSCK-----NIPQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp CCCCTTGGGSCSGGGGSSCC-----CCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred CCCCCcchhhhHHHHHhhcc-----cCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 11222222233333332211 1124566777899999999999977764
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7e-12 Score=133.37 Aligned_cols=109 Identities=20% Similarity=0.156 Sum_probs=51.0
Q ss_pred ccccccCCCC---cccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCCc---
Q 003465 694 FNNILLNSEF---EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~---~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~~--- 754 (818)
|+|||++.+. .+||+|||+++............+||.+|+||| ..+.+ ..+.|+. ...+..
T Consensus 134 p~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 213 (325)
T 3kn6_A 134 PENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHD 213 (325)
T ss_dssp GGGEEEEC----CEEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC---
T ss_pred HHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCc
Confidence 8999997655 899999999998765544455678999999999 22222 3333431 111110
Q ss_pred ------cccceecccCCCcCc---cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 ------TLTYILDQRISPPKK---QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ------~~~~~~d~~l~~~~~---~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...++++....+... +........+.+++..|++.||++||++.||++
T Consensus 214 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 214 RSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp ----CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred cccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 001111111111110 111223345677888999999999999999874
|
| >2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-11 Score=127.70 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=36.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++.+||+|||+++.............||.+|+|||
T Consensus 131 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE 173 (299)
T 2r3i_A 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPE 173 (299)
T ss_dssp GGGEEECTTSCEEECSTTHHHHHCCCSBCTTSCBCCCTTCCHH
T ss_pred HHHeEEcCCCCEEECcchhhhhccCCccccCcccccccccCcH
Confidence 8999999999999999999987754433344567899999999
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-11 Score=131.27 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=34.9
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++. ++.+||+|||+++...... ......||.+|+|||
T Consensus 159 p~NIll~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE 201 (360)
T 3e3p_A 159 PHNVLVNEADGTLKLCDFGSAKKLSPSE-PNVAYICSRYYRAPE 201 (360)
T ss_dssp GGGEEEETTTTEEEECCCTTCBCCCTTS-CCCSTTSCGGGCCHH
T ss_pred HHHEEEeCCCCcEEEeeCCCceecCCCC-CcccccCCcceeCHH
Confidence 89999997 8999999999999775433 234457999999999
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-11 Score=131.96 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=67.3
Q ss_pred ccccccC---CCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--
Q 003465 694 FNNILLN---SEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd---~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~-- 752 (818)
|+|||++ ++..+||+|||+++....... ......||++|+||| .......+.|+. ...+
T Consensus 168 p~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~ 247 (327)
T 2yfx_A 168 ARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYP 247 (327)
T ss_dssp GGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred HhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence 8999999 455699999999987644322 234567899999999 222222233321 1111
Q ss_pred CccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 753 HITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 753 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.....++.+..........+......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~ 302 (327)
T 2yfx_A 248 SKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 302 (327)
T ss_dssp TCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 1111111111111100011122334566788899999999999999999999877
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-11 Score=126.69 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=95.8
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh-------------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA------------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~------------------------------- 691 (818)
+.|.....+| |.||+|.. .++..||+|..........+.|.+|+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC 88 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence 4566666677 89999996 45789999976654444455677776
Q ss_pred ----------------------------------------cc---cccccc---CCCCcccccccccceeccCCCCCccc
Q 003465 692 ----------------------------------------HV---FNNILL---NSEFEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 ----------------------------------------h~---~~NILL---d~~~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||+ +.++.+||+|||+++...... ....
T Consensus 89 ~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~-~~~~ 167 (277)
T 3f3z_A 89 TGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK-MMRT 167 (277)
T ss_dssp CSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS-CBCC
T ss_pred CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc-chhc
Confidence 22 899999 889999999999998775443 2344
Q ss_pred cccccceeCCC---CCCcchHHHHhc---------ccCC--Cccccce----ecccCCCcCccchHHHHHHHHHHHHhcc
Q 003465 726 IAGTYRYIAPA---KHPQEILSLFSS---------TSDP--HITLTYI----LDQRISPPKKQKIVQDIALASIVALACL 787 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~~~l~~~~~---------~~~~--~~~~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~ 787 (818)
..||.+|+||| ...+...+.|+. ...+ .....++ ......... .........+.+++..|+
T Consensus 168 ~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l 246 (277)
T 3f3z_A 168 KVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPE-KDWLNVSPQAESLIRRLL 246 (277)
T ss_dssp CCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCH-HHHTTSCHHHHHHHHHHT
T ss_pred cCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCc-hhhhcCCHHHHHHHHHHc
Confidence 57999999999 222222233321 1111 1111111 111111100 000122345667888999
Q ss_pred CCCCCCCCChHHHHH
Q 003465 788 QSKPKSVPTMQRVSQ 802 (818)
Q Consensus 788 ~~~p~~RP~m~~V~~ 802 (818)
+.+|++||++.++++
T Consensus 247 ~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 247 TKSPKQRITSLQALE 261 (277)
T ss_dssp CSSTTTSCCHHHHTT
T ss_pred cCChhhCcCHHHHhc
Confidence 999999999999874
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-11 Score=134.20 Aligned_cols=100 Identities=7% Similarity=-0.097 Sum_probs=62.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----C-----------CCcchHHHHhcc---------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----K-----------HPQEILSLFSST--------- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~-----------~~~~~l~~~~~~--------- 749 (818)
|+|||+|.++++||+|||+|+.... ..+..+| .+|+||| . ..+...+.|+..
T Consensus 234 p~NIll~~~~~~kL~DFG~a~~~~~---~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg 309 (377)
T 3byv_A 234 PVDIVLDQRGGVFLTGFEHLVRDGA---RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCA 309 (377)
T ss_dssp GGGEEECTTCCEEECCGGGCEETTC---EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHS
T ss_pred HHHEEEcCCCCEEEEechhheecCC---cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHC
Confidence 8999999999999999999996432 2345678 9999999 2 222234444321
Q ss_pred c--CCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 750 S--DPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 750 ~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. +......+.......... .....+.+++..|++.||++||++.|+++
T Consensus 310 ~~Pf~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 310 DLPITKDAALGGSEWIFRSCK-----NIPQPVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp SCCC------CCSGGGGSSCC-----CCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred CCCCcccccccchhhhhhhcc-----CCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence 1 111111111221111111 11234567778999999999999999985
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-11 Score=128.95 Aligned_cols=40 Identities=33% Similarity=0.346 Sum_probs=34.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++..... .+..+||..|+|||
T Consensus 156 p~NIll~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE 195 (367)
T 1cm8_A 156 PGNLAVNEDCELKILDFGLARQADSE---MTGYVVTRWYRAPE 195 (367)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSS---CCSSCSCGGGCCTH
T ss_pred HHHEEEcCCCCEEEEeeecccccccc---cCcCcCCCCcCCHH
Confidence 89999999999999999999976432 34567999999999
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=8e-13 Score=142.74 Aligned_cols=138 Identities=20% Similarity=0.166 Sum_probs=69.2
Q ss_pred CCCCeeeccCCcCCCCcCccc-cCCCCCCEEEcCCCcccccCCcCc-----CCCCCCCEEeccCCcCCCC----CCcccC
Q 003465 317 TRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTI-----GDLTNLIYLDLSLNQLSGP----IPSTFG 386 (818)
Q Consensus 317 ~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~----~~~~~~ 386 (818)
++|+.|+|++|.++......+ ..+++|+.|+|++|.+.......+ ...++|+.|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554432211111 122345555555555543222222 2344566666666655431 222334
Q ss_pred CCCCCCEEEccCCcCccc----CCccccCCCCCCEEecccCcCccc----CCccccCCCCCCEEECcCCcCCccCC
Q 003465 387 HLTLLKFLNLNSNKLNGS----IPSELMNCFSLQSLILSNNSLTGR----IPSEIRNLSYLHELDLSLNFISGMTP 454 (818)
Q Consensus 387 ~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p 454 (818)
.+++|++|+|++|.+++. ++..+..+++|+.|+|++|.+++. ++..+...++|++|+|++|.|++...
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 556666666666666532 233445556677777777766542 22334455667777777777665433
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-12 Score=131.58 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=66.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+||++++++.+||+|||+++.............||.+|+||| ..+.+ ..+.|+. ...+ .....+
T Consensus 144 p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 223 (279)
T 2w5a_A 144 PANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE 223 (279)
T ss_dssp GGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred hhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHH
Confidence 7899999999999999999987654433234567999999999 22222 2233321 1111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+......+.....+......+.+++..|++.+|++||++.||++.+...
T Consensus 224 ~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~ 272 (279)
T 2w5a_A 224 LAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLIL 272 (279)
T ss_dssp HHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCC
T ss_pred HHHHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhh
Confidence 1110000000001112234566788899999999999999999876644
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-11 Score=132.27 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=96.1
Q ss_pred Hhhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc--cchhhhhHhhh----------------------------
Q 003465 647 TEDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR--SAFFKSFQNEA---------------------------- 691 (818)
Q Consensus 647 t~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~--~~~~~~f~~E~---------------------------- 691 (818)
.++|.....+| |.||+|.. .+|+.||||.+.... ....+.+.+|+
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 45676667777 89999986 468999999765432 22334566666
Q ss_pred -------------------------------------------cc---ccccccCCCC---cccccccccceeccCCCCC
Q 003465 692 -------------------------------------------HV---FNNILLNSEF---EAFFGNFGVARLLNSDSSN 722 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd~~~---~~ki~DFGla~~~~~~~~~ 722 (818)
|+ |+|||++.+. .+||+|||+++..... ..
T Consensus 108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~-~~ 186 (362)
T 2bdw_A 108 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS-EA 186 (362)
T ss_dssp CCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTC-CS
T ss_pred ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCC-cc
Confidence 22 8999998754 5999999999877533 23
Q ss_pred ccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Cccccce----ecccCCCcCccchHHHHHHHHHHH
Q 003465 723 RTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HITLTYI----LDQRISPPKKQKIVQDIALASIVA 783 (818)
Q Consensus 723 ~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~~~~~----~d~~l~~~~~~~~~~~~~~~~~la 783 (818)
....+||++|+||| ..+.+ ..+.|+. ...+ .....++ ......... +........+.+++
T Consensus 187 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li 265 (362)
T 2bdw_A 187 WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPS-PEWDTVTPEAKSLI 265 (362)
T ss_dssp CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT-TGGGGSCHHHHHHH
T ss_pred cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCc-ccccCCCHHHHHHH
Confidence 34568999999999 22222 3344432 1111 1111111 111111111 11112234566788
Q ss_pred HhccCCCCCCCCChHHHHHH
Q 003465 784 LACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 784 ~~C~~~~p~~RP~m~~V~~~ 803 (818)
..|++.||++||++.|+++.
T Consensus 266 ~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 266 DSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp HHHSCSSGGGSCCHHHHTTS
T ss_pred HHHcCCChhhCcCHHHHhcC
Confidence 89999999999999998753
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-11 Score=131.99 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=63.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++..... ....+||++|+||| ..+.+ ..+.|+.. ..+ .....+
T Consensus 169 p~NIll~~~g~~kL~DFg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~ 245 (350)
T 1rdq_E 169 PENLLIDQQGYIQVTDFGFAKRVKGR---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ 245 (350)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSC---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred cceEEECCCCCEEEcccccceeccCC---cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHH
Confidence 89999999999999999999976432 33568999999999 22222 33444321 111 111111
Q ss_pred ----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-----hHHHHH
Q 003465 759 ----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-----MQRVSQ 802 (818)
Q Consensus 759 ----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-----m~~V~~ 802 (818)
+....+.. +......+.++...|++.+|++||+ +.||.+
T Consensus 246 ~~~~i~~~~~~~-----p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 246 IYEKIVSGKVRF-----PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHHHHHHCCCCC-----CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHcCCCCC-----CCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 11222211 1112234566777999999999998 788764
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-11 Score=131.40 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=36.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++++||+|||+++............+||++|+|||
T Consensus 138 p~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE 180 (345)
T 3a8x_A 138 LDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPE 180 (345)
T ss_dssp GGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHH
T ss_pred HHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCcc
Confidence 8999999999999999999987544444455678999999999
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-11 Score=132.58 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=63.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC------CCcc-hHHHHhccc---------CCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK------HPQE-ILSLFSSTS---------DPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~------~~~~-~l~~~~~~~---------~~~~--- 754 (818)
|+|||+|.++.+||+|||+|+.+.... ..+..+||++|+|||. .+.+ ..+.|+.+. .+..
T Consensus 143 p~NIll~~~g~vkL~DFG~a~~~~~~~-~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~ 221 (384)
T 4fr4_A 143 PDNILLDEHGHVHITDFNIAAMLPRET-QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRS 221 (384)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCTTC-CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCT
T ss_pred HHHeEECCCCCEEEeccceeeeccCCC-ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCC
Confidence 899999999999999999999875432 3455789999999991 1122 344454211 1110
Q ss_pred --cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-hHHHH
Q 003465 755 --TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-MQRVS 801 (818)
Q Consensus 755 --~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-m~~V~ 801 (818)
...+++........ ..+......+..++..|++.+|++||+ +.+|.
T Consensus 222 ~~~~~~~~~~~~~~~~-~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~ 270 (384)
T 4fr4_A 222 STSSKEIVHTFETTVV-TYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ 270 (384)
T ss_dssp TSCHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred CccHHHHHHHHhhccc-CCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence 00011000000000 001112234667778999999999999 66665
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-11 Score=126.82 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=63.5
Q ss_pred ccccccCCCCc---ccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc---------ccCCC--cc
Q 003465 694 FNNILLNSEFE---AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~---~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~~~--~~ 755 (818)
|+||+++.+.. +||+|||+++...... ......||.+|+||| ..+ +...+.|+. ...+. ..
T Consensus 133 p~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~ 211 (284)
T 3kk8_A 133 PENLLLASKAKGAAVKLADFGLAIEVNDSE-AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED 211 (284)
T ss_dssp GGGEEESSSSTTCCEEECCCTTCEECCSSC-BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HHHEEEecCCCCCcEEEeeceeeEEcccCc-cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCc
Confidence 89999987665 9999999998765432 234567999999999 222 222333331 11111 11
Q ss_pred ccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+ +......... +........+.+++..|++.+|++||++.|+++
T Consensus 212 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 212 QHRLYAQIKAGAYDYPS-PEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp HHHHHHHHHHTCCCCCT-TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhHHHHHHHhccccCCc-hhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 001 1111111110 011122334667888999999999999999986
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-11 Score=129.98 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=64.5
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC----CCC-cchHHHHhc---------ccCCCccccc
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHP-QEILSLFSS---------TSDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~-~~~l~~~~~---------~~~~~~~~~~ 758 (818)
|+|||+| +++.+||+|||+++..... ......||.+|+||| ... ....+.|+. ...+.....+
T Consensus 177 p~NIll~~~~~~~kL~Dfg~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~ 254 (320)
T 3a99_A 177 DENILIDLNRGELKLIDFGSGALLKDT--VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE 254 (320)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCSS--CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH
T ss_pred HHHEEEeCCCCCEEEeeCccccccccc--cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh
Confidence 8999999 7899999999999987533 234467999999999 222 112333432 1111111112
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+......... .....+.+++..|++.+|++||++.||++
T Consensus 255 ~~~~~~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 255 IIRGQVFFRQ-----RVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp HHHCCCCCSS-----CCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhcccccccc-----cCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 2222211111 11234567778999999999999999986
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-11 Score=133.62 Aligned_cols=154 Identities=16% Similarity=0.079 Sum_probs=95.1
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh-------------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA------------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~------------------------------- 691 (818)
+.|.....|| |.||+|.. .+|+.||+|............+.+|+
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~ 130 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 130 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcC
Confidence 3455556677 89999986 46899999976554333444566666
Q ss_pred -----------------------------------------cc---ccccccCC--CCcccccccccceeccCCCCCccc
Q 003465 692 -----------------------------------------HV---FNNILLNS--EFEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 -----------------------------------------h~---~~NILLd~--~~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||++. ++.+||+|||+|+...... ....
T Consensus 131 ~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~-~~~~ 209 (387)
T 1kob_A 131 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE-IVKV 209 (387)
T ss_dssp CCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS-CEEE
T ss_pred CCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCc-ceee
Confidence 22 89999984 5789999999999875433 2334
Q ss_pred cccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccccc----eecccCCCcCccchHHHHHHHHHHHHhc
Q 003465 726 IAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITLTY----ILDQRISPPKKQKIVQDIALASIVALAC 786 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C 786 (818)
.+||.+|+||| ..+.+ ..+.|+.. ..+ .....+ +......... .........+.+++..|
T Consensus 210 ~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~ 288 (387)
T 1kob_A 210 TTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDE-DAFSSVSPEAKDFIKNL 288 (387)
T ss_dssp ECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCS-STTTTSCHHHHHHHHTT
T ss_pred eccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCc-cccccCCHHHHHHHHHH
Confidence 57999999999 22222 33344321 111 111011 1111111110 01112233456778899
Q ss_pred cCCCCCCCCChHHHHHH
Q 003465 787 LQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 787 ~~~~p~~RP~m~~V~~~ 803 (818)
++.||++||++.|+++.
T Consensus 289 L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 289 LQKEPRKRLTVHDALEH 305 (387)
T ss_dssp SCSSGGGSCCHHHHHTS
T ss_pred cCCChhHCcCHHHHhhC
Confidence 99999999999999863
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=9.1e-12 Score=133.18 Aligned_cols=104 Identities=24% Similarity=0.349 Sum_probs=65.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhc---------cc--CCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TS--DPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~--~~~~~~~~ 758 (818)
++|||++.++.+||+|||+++.............||.+|+||| .. .....+.|+. .. +......+
T Consensus 169 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~ 248 (335)
T 2owb_A 169 LGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE 248 (335)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred chhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH
Confidence 8999999999999999999998765444455678999999999 22 1212333321 11 11111111
Q ss_pred e----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 I----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ....... +......+.+++..|++.||++||++.|+++
T Consensus 249 ~~~~~~~~~~~~-----~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 249 TYLRIKKNEYSI-----PKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp HHHHHHHTCCCC-----CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHhcCCCCC-----CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1 1111110 1111234556778999999999999999985
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-11 Score=130.59 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=35.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++....... ..+..+||.+|+|||
T Consensus 156 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE 201 (364)
T 3qyz_A 156 PSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPE 201 (364)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHH
T ss_pred hHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCH
Confidence 8999999999999999999997754322 234568999999999
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-11 Score=130.55 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=33.4
Q ss_pred ccccccCC-------------------------CCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNS-------------------------EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~-------------------------~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++ ++.+||+|||+|+..... .....||.+|+|||
T Consensus 165 p~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~---~~~~~gt~~y~aPE 229 (360)
T 3llt_A 165 PENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY---HGSIINTRQYRAPE 229 (360)
T ss_dssp GGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC---CCSCCSCGGGCCHH
T ss_pred cccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCC---CcCccCcccccCcH
Confidence 89999986 889999999999875432 23467999999999
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-11 Score=132.52 Aligned_cols=107 Identities=17% Similarity=0.119 Sum_probs=54.8
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhc---------ccCC--Ccc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~~~--~~~ 755 (818)
|+|||++. ++.+||+|||+++...... .....+||++|+||| .. .+...+.|+. ...+ ...
T Consensus 176 p~NIll~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 254 (349)
T 2w4o_A 176 PENLLYATPAPDAPLKIADFGLSKIVEHQV-LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER 254 (349)
T ss_dssp GGGEEESSSSTTCCEEECCCC-----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT
T ss_pred cccEEEecCCCCCCEEEccCccccccCccc-ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc
Confidence 89999975 8999999999998764332 234567999999999 22 2223333431 1111 111
Q ss_pred c-----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 L-----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~-----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ..+......... +...+....+.+++..|++.||++||++.|+++
T Consensus 255 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 255 GDQFMFRRILNCEYYFIS-PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp CHHHHHHHHHTTCCCCCT-TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ccHHHHHHHHhCCCccCC-chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0 111111111100 001122345667788999999999999999986
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-11 Score=129.71 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=57.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~ 755 (818)
|+|||++.++.+||+|||+++.+..... ......||.+|+||| ..+.+ ..+.|+. ...+ ...
T Consensus 144 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~ 223 (311)
T 3ork_A 144 PANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 223 (311)
T ss_dssp GGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred HHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999999999999987754322 234567999999999 22222 3333431 1111 111
Q ss_pred ccceecccCCCcCcc---chHHHHHHHHHHHHhccCCCCCCCCChHHHH-HHHccC
Q 003465 756 LTYILDQRISPPKKQ---KIVQDIALASIVALACLQSKPKSVPTMQRVS-QEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~---~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~-~~L~~~ 807 (818)
..++........... ........+.+++..|++.+|++||++.+++ ..+.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 224 PVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp HHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 111111111000000 0011234566788899999999999866655 444443
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.8e-12 Score=134.01 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=64.8
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC--C---CC-cchHHHHhc---------ccCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA--K---HP-QEILSLFSS---------TSDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE--~---~~-~~~l~~~~~---------~~~~~~--- 754 (818)
|+|||+|.++++||+|||+++...... ......+||++|+||| . .. +...+.|+. ...+..
T Consensus 187 p~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~ 266 (355)
T 1vzo_A 187 LENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG 266 (355)
T ss_dssp GGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT
T ss_pred HHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCC
Confidence 899999999999999999999764332 2234568999999999 1 11 123334431 111110
Q ss_pred ---cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHHH
Q 003465 755 ---TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQE 803 (818)
Q Consensus 755 ---~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~~ 803 (818)
...++......... ..+.+....+.+++..|++.+|++|| ++.|+++.
T Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 267 EKNSQAEISRRILKSEP-PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp SCCCHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred ccchHHHHHHHHhccCC-CCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 00111111100000 01112233456788899999999999 89998764
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-11 Score=128.93 Aligned_cols=101 Identities=20% Similarity=0.200 Sum_probs=63.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITL-- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~-- 756 (818)
|+|||+|.++.+||+|||+++..... ....+||++|+||| ..+.+ ..+.|+.. ..+ ....
T Consensus 134 p~NIll~~~g~~kL~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~ 210 (318)
T 1fot_A 134 PENILLDKNGHIKITDFGFAKYVPDV---TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK 210 (318)
T ss_dssp GGGEEECTTSCEEECCCSSCEECSSC---BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred hheEEEcCCCCEEEeecCcceecCCc---cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH
Confidence 89999999999999999999976432 34568999999999 22222 33444321 111 1111
Q ss_pred --cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 757 --TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 757 --~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
..++...+..+ ......+.++...|++.+|++|| ++.||.+
T Consensus 211 ~~~~i~~~~~~~p-----~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 211 TYEKILNAELRFP-----PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp HHHHHHHCCCCCC-----TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHhCCCCCC-----CCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 11222222111 11123455677799999999999 8888873
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.13 E-value=8.7e-11 Score=124.72 Aligned_cols=108 Identities=20% Similarity=0.168 Sum_probs=64.6
Q ss_pred ccccccCCCC----cccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc---------ccCC--Cc
Q 003465 694 FNNILLNSEF----EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~----~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~~--~~ 754 (818)
|+||++++++ .+||+|||+++...... ......||.+|+||| ..+ +...+.|+. ...+ ..
T Consensus 143 p~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 221 (321)
T 2a2a_A 143 PENIMLLDKNIPIPHIKLIDFGLAHEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221 (321)
T ss_dssp GGGEEESCTTSSSCCEEECCCTTCEECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hHHEEEecCCCCcCCEEEccCccceecCccc-cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC
Confidence 8999999988 79999999999875432 234567999999999 222 223333431 1111 11
Q ss_pred cccceecccCCCc--Cc-cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 TLTYILDQRISPP--KK-QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~~~~~~d~~l~~~--~~-~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.+....... .. .........+.+++..|++.+|++||++.|+++
T Consensus 222 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 222 TKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp SHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred CHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 1111111111100 00 000112234667888999999999999999986
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-11 Score=131.30 Aligned_cols=107 Identities=20% Similarity=0.097 Sum_probs=66.1
Q ss_pred ccccccCC--CCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccc
Q 003465 694 FNNILLNS--EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITL 756 (818)
Q Consensus 694 ~~NILLd~--~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~ 756 (818)
|+|||++. ++.+||+|||+++...... ......||++|+||| ..+.+ ..+.|+.. .+.....
T Consensus 130 p~NIl~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 208 (321)
T 1tki_A 130 PENIIYQTRRSSTIKIIEFGQARQLKPGD-NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN 208 (321)
T ss_dssp GGGEEESSSSCCCEEECCCTTCEECCTTC-EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred HHHEEEccCCCCCEEEEECCCCeECCCCC-ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH
Confidence 89999997 8899999999999875432 234567999999999 22222 33344321 1111111
Q ss_pred ccee----cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYIL----DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~----d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+++ ........ .........+.+++..|++.||++||++.|+++
T Consensus 209 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 209 QQIIENIMNAEYTFDE-EAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHHHHHHHHTCCCCCH-HHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCh-hhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111 11111110 001122345667888999999999999999986
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.9e-11 Score=128.04 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=63.2
Q ss_pred ccccccCCCC--cccccccccceeccCCCC----CccccccccceeCCC--C---CCc-chHHHHhc---------ccCC
Q 003465 694 FNNILLNSEF--EAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA--K---HPQ-EILSLFSS---------TSDP 752 (818)
Q Consensus 694 ~~NILLd~~~--~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE--~---~~~-~~l~~~~~---------~~~~ 752 (818)
|+|||++.+. .+||+|||+++.+..... ......||++|+||| . .+. ...+.|+. ...+
T Consensus 196 p~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~p 275 (345)
T 3hko_A 196 PENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVP 275 (345)
T ss_dssp GGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred hhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 8999998776 899999999997743221 234567999999999 1 222 23333431 1111
Q ss_pred --Ccc----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 --HIT----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 --~~~----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... ...++........ +........+.++...|++.+|++||++.|+++
T Consensus 276 f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 276 FPGVNDADTISQVLNKKLCFEN-PNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp SCCSSHHHHHHHHHHCCCCTTS-GGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred CCCCChHHHHHHHHhcccccCC-cccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 111 1122222222111 111122345667788999999999999999986
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-11 Score=128.94 Aligned_cols=104 Identities=23% Similarity=0.225 Sum_probs=59.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccC--CCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSD--PHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~--~~~~~~~ 758 (818)
|+||+++.++.+||+|||+++..... ......||.+|+||| .......+.|+. ... ......+
T Consensus 137 p~Nili~~~~~~~l~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 214 (279)
T 3fdn_A 137 PENLLLGSAGELKIADFGWSVHAPSS--RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE 214 (279)
T ss_dssp GGGEEECTTSCEEECSCCEESCC----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred hHhEEEcCCCCEEEEeccccccCCcc--cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH
Confidence 89999999999999999998654332 234567999999999 111112223321 111 1111111
Q ss_pred eecc--cCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQ--RISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~--~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.... ...... +......+.+++..|++.+|++||++.||++
T Consensus 215 ~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 215 TYKRISRVEFTF---PDFVTEGARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp HHHHHHHTCCCC---CTTSCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred HHHHHHhCCCCC---CCcCCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 1000 000011 1112234556778999999999999999985
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-11 Score=130.23 Aligned_cols=40 Identities=30% Similarity=0.344 Sum_probs=24.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++..... .+..+||..|+|||
T Consensus 160 p~NIll~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE 199 (367)
T 2fst_X 160 PSNLAVNEDCELKILDFGLARHTADE---MTGYVATRWYRAPE 199 (367)
T ss_dssp GGGEEECTTCCEEECC------------------CCCTTCCHH
T ss_pred HhhEEECCCCCEEEeecccccccccc---CCCcCcCcCccChH
Confidence 89999999999999999999875432 34567999999999
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.8e-11 Score=127.08 Aligned_cols=108 Identities=24% Similarity=0.279 Sum_probs=65.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc---------ccCCCcccc--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSDPHITLT--Y 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~~~~~~~--~ 758 (818)
|+||+++.++.+||+|||+++.............||.+|+||| ..+ ....+.|+. ...+..... +
T Consensus 153 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 232 (314)
T 3com_A 153 AGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR 232 (314)
T ss_dssp GGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred HHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH
Confidence 8999999999999999999988765444445567999999999 111 112233321 111111000 0
Q ss_pred e---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 I---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. +........ ..+......+.+++..|++.+|++||++.++++
T Consensus 233 ~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 233 AIFMIPTNPPPTF-RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp HHHHHHHSCCCCC-SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHhcCCCccc-CCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 0 000000000 011112345667888999999999999999974
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-11 Score=136.04 Aligned_cols=98 Identities=21% Similarity=0.205 Sum_probs=71.2
Q ss_pred chHHHHHHHhhhhhhcccc----CcEEEEEcC-CCcEEEEEecccccc---chhhhhHhhh-------------------
Q 003465 639 AFEEIIRATEDLISDIALE----LDVTAAFTK-HGCLVAEYGSEQGRS---AFFKSFQNEA------------------- 691 (818)
Q Consensus 639 ~~~~l~~at~~f~~~~~ig----g~vy~~~~~-~g~~vAvK~~~~~~~---~~~~~f~~E~------------------- 691 (818)
.+.++...+++|.....|| |.||+|... +|+.||||++..... ...+.|.+|+
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 3455555667888888888 899999974 588999997643211 1122244444
Q ss_pred -----------------------------------------------------cc---ccccccCCCCccccccccccee
Q 003465 692 -----------------------------------------------------HV---FNNILLNSEFEAFFGNFGVARL 715 (818)
Q Consensus 692 -----------------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~ 715 (818)
|+ |+|||+|.++++||+|||+|+.
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~ 224 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLK 224 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred eCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhh
Confidence 22 8999999999999999999987
Q ss_pred ccCCCC-CccccccccceeCCC
Q 003465 716 LNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 716 ~~~~~~-~~~~~~gt~gy~aPE 736 (818)
...+.. ..+..+||++|+|||
T Consensus 225 ~~~~~~~~~~~~~GT~~Y~APE 246 (437)
T 4aw2_A 225 LMEDGTVQSSVAVGTPDYISPE 246 (437)
T ss_dssp CCTTSCEECCSCCSCGGGCCHH
T ss_pred cccCCCcccccccCCcCeeChH
Confidence 755433 234578999999999
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-11 Score=125.87 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=67.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc----hHHHHhc---------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE----ILSLFSS---------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~----~l~~~~~---------~~~~--~~~ 755 (818)
|+||++|+++.+||+|||++.... .....||+.|+||| ..+.. ..+.|+. ...+ ...
T Consensus 141 p~Nil~~~~~~~~l~~~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~ 215 (271)
T 3kmu_A 141 SRSVMIDEDMTARISMADVKFSFQ-----SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLS 215 (271)
T ss_dssp GGGEEECTTSCEEEEGGGSCCTTS-----CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSC
T ss_pred cceEEEcCCcceeEEeccceeeec-----ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccC
Confidence 799999999999999999876432 22357899999999 21111 2333431 1111 111
Q ss_pred cc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.. .+......... +......+.+++..|++.+|++||++.+|++.|+++.
T Consensus 216 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 216 NMEIGMKVALEGLRPTI---PPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp HHHHHHHHHHSCCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 11 11111111111 1223345667888999999999999999999999874
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-11 Score=129.84 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=33.1
Q ss_pred cccccc--CCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILL--NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL--d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+ |.++.+||+|||+|+..... .....||..|+|||
T Consensus 187 p~NIll~~~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE 228 (382)
T 2vx3_A 187 PENILLCNPKRSAIKIVDFGSSCQLGQR---IYQYIQSRFYRSPE 228 (382)
T ss_dssp GGGEEESSTTSCCEEECCCTTCEETTCC---CCSSCSCGGGCCHH
T ss_pred cccEEEecCCCCcEEEEeccCceecccc---cccccCCccccChH
Confidence 899999 55888999999999977432 33467999999999
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=5.6e-11 Score=126.71 Aligned_cols=42 Identities=12% Similarity=0.307 Sum_probs=34.4
Q ss_pred ccccccCCCC-cccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++ .+||+|||+|+....... .....||.+|+|||
T Consensus 158 p~Nil~~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~~~y~aPE 200 (330)
T 3nsz_A 158 PHNVMIDHEHRKLRLIDWGLAEFYHPGQE-YNVRVASRYFKGPE 200 (330)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCTTCC-CCSCCSCGGGCCHH
T ss_pred HHHEEEcCCCCEEEEEeCCCceEcCCCCc-cccccccccccChh
Confidence 8999999776 899999999997754432 33457999999999
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-11 Score=133.94 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=65.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC---CCC----c-chHHHHhcc-----------cCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA---KHP----Q-EILSLFSST-----------SDPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE---~~~----~-~~l~~~~~~-----------~~~~ 753 (818)
|+|||+|.++++||+|||+|+....... .....+||++|+||| ..+ . ...+.|+.. .+..
T Consensus 196 p~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~ 275 (410)
T 3v8s_A 196 PDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA 275 (410)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred HHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCC
Confidence 8999999999999999999998754432 234678999999999 222 1 244455421 1111
Q ss_pred cccc----ceeccc--CCCcCccchHHHHHHHHHHHHhccCCCCCC--CCChHHHHHH
Q 003465 754 ITLT----YILDQR--ISPPKKQKIVQDIALASIVALACLQSKPKS--VPTMQRVSQE 803 (818)
Q Consensus 754 ~~~~----~~~d~~--l~~~~~~~~~~~~~~~~~la~~C~~~~p~~--RP~m~~V~~~ 803 (818)
.... .++... +..+. .......+..++..|++.+|++ ||++.||.+.
T Consensus 276 ~~~~~~~~~i~~~~~~~~~p~---~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 276 DSLVGTYSKIMNHKNSLTFPD---DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp SSHHHHHHHHHTHHHHCCCCT---TCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred CChhhHHHHHHhccccccCCC---cccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 1111 111111 11111 0011233455667999999988 9999999853
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-11 Score=125.83 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=56.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC--cchHHHHhc---------ccCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP--QEILSLFSS---------TSDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~--~~~l~~~~~---------~~~~--~~~~~ 757 (818)
|+||+++.++.+||+|||+++...... ......||.+|+||| ..+ ....+.|+. ...+ .....
T Consensus 139 p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~ 217 (276)
T 2h6d_A 139 PENVLLDAHMNAKIADFGLSNMMSDGE-FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP 217 (276)
T ss_dssp GGGEEECTTSCEEECCCCGGGCCCC--------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred hhhEEECCCCCEEEeecccccccCCCc-ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH
Confidence 899999999999999999998764432 223457999999999 121 122333431 1111 11111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
++.+....... ..+......+.+++..|++.+|++||++.||++.
T Consensus 218 ~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 218 TLFKKIRGGVF-YIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp HHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHHHHhhcCcc-cCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 11110000000 0011122345678889999999999999999863
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-11 Score=129.35 Aligned_cols=108 Identities=21% Similarity=0.266 Sum_probs=61.4
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc---------ccCCC--cc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~~~--~~ 755 (818)
|+|||++. ++.+||+|||+++...... ......||++|+||| ..+ +...+.|+. ...+. ..
T Consensus 159 p~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 237 (327)
T 3lm5_A 159 PQNILLSSIYPLGDIKIVDFGMSRKIGHAC-ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGED 237 (327)
T ss_dssp GGGEEESCBTTBCCEEECCGGGCEEC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred hHHEEEecCCCCCcEEEeeCccccccCCcc-ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 89999998 7899999999999875432 234467999999999 222 223333331 11111 11
Q ss_pred cc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 LT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.. .+......... +........+.+++..|++.+|++||++.|+++.
T Consensus 238 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 238 NQETYLNISQVNVDYSE-ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp HHHHHHHHHHTCCCCCT-TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred chHHHHHHHhcccccCc-hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 00 01111111111 1112233456678889999999999999999853
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-11 Score=137.27 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=62.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCCcc-----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPHIT----- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~~~----- 755 (818)
|+|||+|.++++||+|||+++.+..........+||++|+||| ..+.+ ..+.|+. ...+...
T Consensus 317 P~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~ 396 (543)
T 3c4z_A 317 PENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV 396 (543)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC
T ss_pred hHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch
Confidence 8999999999999999999998765544455668999999999 22222 3444432 1111110
Q ss_pred -ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 756 -LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 756 -~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
..++....+.... ..+......+..++..|++.+|++||++
T Consensus 397 ~~~~~~~~i~~~~~-~~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 397 ENKELKQRVLEQAV-TYPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp CHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred hHHHHHHHHhhccc-CCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 0111111110000 0011122345567779999999999976
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-11 Score=129.80 Aligned_cols=151 Identities=19% Similarity=0.161 Sum_probs=87.6
Q ss_pred hhhhcccc----CcEEEEEcC-CCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 650 LISDIALE----LDVTAAFTK-HGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~~-~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
|.....+| |.||+|... +|..||+|..........+.|.+|+
T Consensus 21 y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 100 (302)
T 2j7t_A 21 WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPG 100 (302)
T ss_dssp EEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTT
T ss_pred eeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCC
Confidence 44444565 899999964 5899999976655444455666666
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGT 729 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt 729 (818)
|+ |+||+++.++.+||+|||+++.............||
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 180 (302)
T 2j7t_A 101 GAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGT 180 (302)
T ss_dssp EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CC
T ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCC
Confidence 22 899999999999999999986543221122345799
Q ss_pred cceeCCCC--------CCcc-hHHHHhc---------ccCCC--ccccce----ecccCCCcCccchHHHHHHHHHHHHh
Q 003465 730 YRYIAPAK--------HPQE-ILSLFSS---------TSDPH--ITLTYI----LDQRISPPKKQKIVQDIALASIVALA 785 (818)
Q Consensus 730 ~gy~aPE~--------~~~~-~l~~~~~---------~~~~~--~~~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~ 785 (818)
.+|+|||. .+.+ ..+.|+. ...+. ....+. ........ ..+......+.+++..
T Consensus 181 ~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~ 258 (302)
T 2j7t_A 181 PYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTL--LTPSKWSVEFRDFLKI 258 (302)
T ss_dssp GGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC--SSGGGSCHHHHHHHHH
T ss_pred hhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCccc--CCccccCHHHHHHHHH
Confidence 99999991 1111 2333431 11111 100000 00000000 0112223456678889
Q ss_pred ccCCCCCCCCChHHHHH
Q 003465 786 CLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 786 C~~~~p~~RP~m~~V~~ 802 (818)
|++.+|++||++.++++
T Consensus 259 ~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 259 ALDKNPETRPSAAQLLE 275 (302)
T ss_dssp HSCSCTTTSCCHHHHTT
T ss_pred HcccChhhCCCHHHHhc
Confidence 99999999999999875
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-11 Score=131.07 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=56.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC--------CC-cchHHHHhc---------ccCCC--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK--------HP-QEILSLFSS---------TSDPH-- 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~--------~~-~~~l~~~~~---------~~~~~-- 753 (818)
|+||+++.++.+||+|||+++.............||.+|+|||. .+ +...+.|+. ...+.
T Consensus 157 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~ 236 (326)
T 2x7f_A 157 GQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCD 236 (326)
T ss_dssp GGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTT
T ss_pred HHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence 89999999999999999999876543333345679999999991 11 112333331 11111
Q ss_pred ccccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 ITLTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 ~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+ +......... .......+.+++..|++.+|++||++.++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 237 MHPMRALFLIPRNPAPRLK---SKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp SCHHHHHHHHHHSCCCCCS---CSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CcHHHHHHHhhcCccccCC---ccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 00000 0000000000 0111234566777999999999999999986
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=5.8e-11 Score=123.03 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=64.4
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCc--chHHHHhc---------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQ--EILSLFSS---------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~--~~l~~~~~---------~~~~~--~~ 755 (818)
|+||+++.++.+||+|||+++...... .......||.+|+||| ..+. ...+.|+. ...+. ..
T Consensus 133 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 212 (276)
T 2yex_A 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS 212 (276)
T ss_dssp GGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSC
T ss_pred hHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCc
Confidence 899999999999999999998764332 2234567999999999 2221 12333431 11111 00
Q ss_pred c-----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 L-----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~-----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ..+........ ........+.++...|++.+|++||++.||++
T Consensus 213 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 213 DSCQEYSDWKEKKTYLN---PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp TTSHHHHHHHTTCTTST---TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hHHHHHHHhhhcccccC---chhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 0 00111111000 01122334567888999999999999999875
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-11 Score=124.28 Aligned_cols=104 Identities=24% Similarity=0.255 Sum_probs=57.8
Q ss_pred cccccc---CCCCcccccccccceeccCCCCCccccccccceeCCC--C-CCcchHHHHhc---------ccCC--Cccc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--K-HPQEILSLFSS---------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~-~~~~~l~~~~~---------~~~~--~~~~ 756 (818)
|+|||+ +.++.+||+|||+++...... ......||.+|+||| + ..+...+.|+. ...+ ....
T Consensus 152 p~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~ 230 (285)
T 3is5_A 152 PENILFQDTSPHSPIKIIDFGLAELFKSDE-HSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSL 230 (285)
T ss_dssp GGGEEESSSSTTCCEEECCCCCCCC-----------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHHEEEecCCCCCCEEEEeeecceecCCcc-cCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCH
Confidence 899999 556889999999998765432 234567999999999 2 22222333331 1111 1111
Q ss_pred cceec------ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYILD------QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~d------~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.++.. +...... ......+.+++..|++.+|++||++.||++
T Consensus 231 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 231 EEVQQKATYKEPNYAVEC----RPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHHHHHHHHCCCCCCC------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHHHhhhccCCccccccc----CcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 11110 1111000 001234567788999999999999999985
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.9e-11 Score=126.31 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=63.5
Q ss_pred cccccc---CCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Ccc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~ 755 (818)
|+||++ ++++.+||+|||+++..... ......||.+|+||| ..+.+ ..+.|+. ...+ ...
T Consensus 134 p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 211 (304)
T 2jam_A 134 PENLLYLTPEENSKIMITDFGLSKMEQNG--IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET 211 (304)
T ss_dssp GGGCEESSSSTTCCEEBCSCSTTCCCCCB--TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred HHHEEEecCCCCCCEEEccCCcceecCCC--ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence 899999 88999999999999865322 234457999999999 22222 3333431 1111 111
Q ss_pred cc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.. .+......... +........+.++...|++.+|++||++.|+++
T Consensus 212 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 212 ESKLFEKIKEGYYEFES-PFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp HHHHHHHHHHCCCCCCT-TTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHcCCCCCCc-cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11 11111111110 111122345667888999999999999999985
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.1e-11 Score=127.44 Aligned_cols=108 Identities=10% Similarity=-0.005 Sum_probs=67.0
Q ss_pred ccccccCC-----------CCcccccccccceeccCC--CCCccccccccceeCCC---CCCcc-hHHHHhc--------
Q 003465 694 FNNILLNS-----------EFEAFFGNFGVARLLNSD--SSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS-------- 748 (818)
Q Consensus 694 ~~NILLd~-----------~~~~ki~DFGla~~~~~~--~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~-------- 748 (818)
|+|||++. ++.+||+|||+|+.+... ....+..+||.+|+||| ..+.+ ..+.|+.
T Consensus 200 p~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell 279 (365)
T 3e7e_A 200 PDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCML 279 (365)
T ss_dssp GGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHH
T ss_pred HHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHH
Confidence 89999999 899999999999876532 22345678999999999 33222 3344432
Q ss_pred -ccCCC---ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHccC
Q 003465 749 -TSDPH---ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSV-PTMQRVSQEFLKF 807 (818)
Q Consensus 749 -~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~R-P~m~~V~~~L~~~ 807 (818)
...+. ......++..+.... ..+.+. ++...|++.+|.+| |++.++.+.|+++
T Consensus 280 tg~~pf~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~l~~~p~~r~~~~~~l~~~l~~~ 337 (365)
T 3e7e_A 280 FGTYMKVKNEGGECKPEGLFRRLP---HLDMWN---EFFHVMLNIPDCHHLPSLDLLRQKLKKV 337 (365)
T ss_dssp HSSCCCEEEETTEEEECSCCTTCS---SHHHHH---HHHHHHHCCCCTTCCCCHHHHHHHHHHH
T ss_pred hCCCccccCCCCceeechhccccC---cHHHHH---HHHHHHcCCCCCCcchHHHHHHHHHHHH
Confidence 11111 001111222222221 233333 45558889999998 6788888888765
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6e-11 Score=128.05 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=55.3
Q ss_pred ccccccCCCCc--ccccccccceeccCCCCCccccccccceeCCC---CCCcc--hHHHHhc---------ccCCCcc--
Q 003465 694 FNNILLNSEFE--AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE--ILSLFSS---------TSDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~--~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~--~l~~~~~---------~~~~~~~-- 755 (818)
|+|||++.+.. +||+|||+|+...... .....+||++|+||| ..... ..+.|+. ...+...
T Consensus 144 p~Nill~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~ 222 (361)
T 3uc3_A 144 LENTLLDGSPAPRLKICDFGYSKSSVLHS-QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPE 222 (361)
T ss_dssp GGGEEECSSSSCCEEECCCCCC----------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC---
T ss_pred HHHEEEcCCCCceEEEeecCccccccccC-CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCc
Confidence 89999998776 9999999998543322 233457999999999 22221 1344432 1111110
Q ss_pred ----ccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 ----LTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ----~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
... +......... .......+.+++..|++.+|++||++.|+++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 223 EPRDYRKTIQRILSVKYSIPD---DIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp -CCCHHHHHHHHHTTCCCCCT---TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred cHHHHHHHHHHHhcCCCCCCC---cCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 001 1111111111 11122345677889999999999999999853
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=5.1e-11 Score=129.29 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=25.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+|+...... ..+..+||.+|+|||
T Consensus 155 p~NIl~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE 196 (371)
T 2xrw_A 155 PSNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPE 196 (371)
T ss_dssp GGGEEECTTSCEEECCCCC-----------------CTTCCHH
T ss_pred HHHEEEcCCCCEEEEEeeccccccccc-ccCCceecCCccCHH
Confidence 899999999999999999998764332 234567999999999
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.1e-11 Score=128.63 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=30.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++..... .+...||.+|+|||
T Consensus 172 p~NIll~~~~~~kL~Dfg~a~~~~~~---~~~~~~t~~y~aPE 211 (371)
T 4exu_A 172 PGNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPE 211 (371)
T ss_dssp GGGEEECTTCCEEECSTTCC-----------CTTCCCTTSCHH
T ss_pred HHHeEECCCCCEEEEecCcccccccC---cCCcccCccccCHH
Confidence 89999999999999999999865432 34467899999999
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-11 Score=127.60 Aligned_cols=105 Identities=22% Similarity=0.257 Sum_probs=55.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC-------C-CcchHHHHhc---------ccCCCc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-------H-PQEILSLFSS---------TSDPHI-- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-------~-~~~~l~~~~~---------~~~~~~-- 754 (818)
|+||++|.++.+||+|||+++....... .....||.+|+|||. . .+...+.|+. ...+..
T Consensus 138 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 216 (290)
T 3fme_A 138 PSNVLINALGQVKMCDFGISGYLVDDVA-KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW 216 (290)
T ss_dssp GGGCEECTTCCEEBCCC----------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred HHHEEECCCCCEEEeecCCccccccccc-ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCcccc
Confidence 8999999999999999999987654322 233579999999992 1 1112333331 111111
Q ss_pred -c----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 -T----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 -~----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ....+........ .......+.+++..|++.+|++||++.||++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 217 GTPFQQLKQVVEEPSPQLP---ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp SCHHHHHHHHHHSCCCCCC---TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CchHHHHHHHhccCCCCcc---cccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 0 1111111111111 1112334667888999999999999999975
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-11 Score=123.43 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=60.6
Q ss_pred ccccccC-------------------CCCcccccccccceeccCCCCCccccccccceeCCC---CC-Cc-chHHHHhcc
Q 003465 694 FNNILLN-------------------SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQ-EILSLFSST 749 (818)
Q Consensus 694 ~~NILLd-------------------~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~-~~l~~~~~~ 749 (818)
|+|||++ ....+||+|||+++...... ...||.+|+||| .. .. ...+.|+..
T Consensus 143 p~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG 218 (289)
T 1x8b_A 143 PSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ----VEEGDSRFLANEVLQENYTHLPKADIFALA 218 (289)
T ss_dssp GGGEEEC--------------------CCCEEECCCTTCEETTCSC----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCcc----ccCCCccccChhHhcCCCCCCchhhHHHHH
Confidence 8999998 45589999999998765332 245999999999 21 11 233344321
Q ss_pred c----------CCC-c-cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 750 S----------DPH-I-TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 750 ~----------~~~-~-~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ... . ....+........ +......+.+++..|++.+|++||++.|+++
T Consensus 219 ~il~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 219 LTVVCAAGAEPLPRNGDQWHEIRQGRLPRI----PQVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHHHHTTCCCCCSSSHHHHHHHTTCCCCC----SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHhcCCCCCcchhHHHHHHcCCCCCC----CcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 1 110 0 0111111111111 1112334667778999999999999999875
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-11 Score=128.45 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=58.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC--CC------------Ccc-hHHHHhc--------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA--KH------------PQE-ILSLFSS-------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE--~~------------~~~-~l~~~~~-------- 748 (818)
|+|||+++ +.+||+|||+++....... ......||.+|+||| .. +.+ ..+.|+.
T Consensus 155 p~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~ 233 (313)
T 3cek_A 155 PANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMT 233 (313)
T ss_dssp GGGEEEET-TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHH
T ss_pred cccEEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHH
Confidence 89999975 8999999999987754322 223567999999999 11 111 2333431
Q ss_pred -ccCCCcc-------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 749 -TSDPHIT-------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 749 -~~~~~~~-------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+... ...++++...... +......+.+++..|++.+|++||++.||++
T Consensus 234 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 234 YGKTPFQQIINQISKLHAIIDPNHEIEF---PDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp HSSCTTTTCCSHHHHHHHHHCTTSCCCC---CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hCCCchhhHHHHHHHHHHHHhcccccCC---cccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 1111110 1122232222211 1111234566777999999999999999985
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.3e-11 Score=124.38 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=70.2
Q ss_pred cccccc----CCCCcccccccccceeccCCCCCccccccccceeCCCC-----------CCcc-hHHHHhc---------
Q 003465 694 FNNILL----NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-----------HPQE-ILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILL----d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-----------~~~~-~l~~~~~--------- 748 (818)
|+|||+ |.++.+||+|||+|+....... .....||.+|+|||. .+.+ ..+.|+.
T Consensus 140 p~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~ 218 (319)
T 4euu_A 140 PGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ-FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT 218 (319)
T ss_dssp GGGEEEEECTTSCEEEEECCCTTCEECCTTCC-BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHH
T ss_pred HHHEEEeccCCCCceEEEccCCCceecCCCCc-eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHh
Confidence 899999 8999999999999998755432 334679999999991 1211 2333321
Q ss_pred ccCCCc------cccce----e---------------------cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 749 TSDPHI------TLTYI----L---------------------DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 749 ~~~~~~------~~~~~----~---------------------d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
...+.. ...++ + ++.+.... .........+..+...|++.||++||++
T Consensus 219 g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ll~~~L~~dP~~R~s~ 297 (319)
T 4euu_A 219 GSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSC-SLSRGLQVLLTPVLANILEADQEKCWGF 297 (319)
T ss_dssp SSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTC-SSCHHHHHHHHHHHHHHSCCCTTTSCCH
T ss_pred CCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCccc-ccchhHHHHhHHHHHHhccCChhhhccH
Confidence 111100 00000 0 00111111 1234445566778889999999999999
Q ss_pred HHHHHHHccC
Q 003465 798 QRVSQEFLKF 807 (818)
Q Consensus 798 ~~V~~~L~~~ 807 (818)
.|+++.....
T Consensus 298 ~ell~h~~d~ 307 (319)
T 4euu_A 298 DQFFAETSDI 307 (319)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhhccHHH
Confidence 9999988755
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-11 Score=127.41 Aligned_cols=43 Identities=28% Similarity=0.468 Sum_probs=33.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC----------CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----------~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++....... .....+||.+|+|||
T Consensus 140 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE 192 (353)
T 2b9h_A 140 PSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPE 192 (353)
T ss_dssp GGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHH
T ss_pred HHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCCe
Confidence 8999999999999999999998753211 123457999999999
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=123.38 Aligned_cols=89 Identities=27% Similarity=0.256 Sum_probs=41.3
Q ss_pred ccCCCcCceecccC-cccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCC
Q 003465 121 IGALSKLQILDLSH-NNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199 (818)
Q Consensus 121 ~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 199 (818)
|..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.+|++|++|+|++|.+++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44444455555543 444444444444555555555555555444444444555555555555554433333333332 4
Q ss_pred cEEEcccCcCC
Q 003465 200 TTLKLFSNQIN 210 (818)
Q Consensus 200 ~~L~L~~n~l~ 210 (818)
++|+|.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 44444444443
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-11 Score=127.42 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=49.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC--------CcchHHHHhc---------ccCCCc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH--------PQEILSLFSS---------TSDPHI-- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~--------~~~~l~~~~~---------~~~~~~-- 754 (818)
|+|||++.++.+||+|||+++...... ......||.+|+|||.. .+...+.|+. ...+..
T Consensus 154 p~NIll~~~~~~kl~Dfg~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 232 (327)
T 3aln_A 154 PSNILLDRSGNIKLCDFGISGQLVDSI-AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKW 232 (327)
T ss_dssp GGGEEEETTTEEEECCCSSSCC-------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred HHHEEEcCCCCEEEccCCCceeccccc-ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence 899999999999999999998764432 22345799999999932 1112333321 111111
Q ss_pred -cccceecccCCCcC----ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 -TLTYILDQRISPPK----KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 -~~~~~~d~~l~~~~----~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.+.....+.. ..........+.+++..|++.+|++||++.+|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 233 NSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp -------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred chHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 01111111111110 0001123345677888999999999999999874
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-11 Score=133.43 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=71.7
Q ss_pred cchHHHHHHHhhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc---cchhhhhHhhh------------------
Q 003465 638 IAFEEIIRATEDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR---SAFFKSFQNEA------------------ 691 (818)
Q Consensus 638 ~~~~~l~~at~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~---~~~~~~f~~E~------------------ 691 (818)
+.+++....+++|.....|| |.||+|.. .+|+.||||.+.... ....+.+.+|.
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 130 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF 130 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence 34445445567787777888 89999996 469999999765321 11223344444
Q ss_pred ------------------------------------------------------cc---ccccccCCCCcccccccccce
Q 003465 692 ------------------------------------------------------HV---FNNILLNSEFEAFFGNFGVAR 714 (818)
Q Consensus 692 ------------------------------------------------------h~---~~NILLd~~~~~ki~DFGla~ 714 (818)
|+ |+|||+|.++++||+|||+++
T Consensus 131 ~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~ 210 (412)
T 2vd5_A 131 QDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCL 210 (412)
T ss_dssp ECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred eeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhhe
Confidence 22 899999999999999999999
Q ss_pred eccCCCCC-ccccccccceeCCC
Q 003465 715 LLNSDSSN-RTLIAGTYRYIAPA 736 (818)
Q Consensus 715 ~~~~~~~~-~~~~~gt~gy~aPE 736 (818)
....+... ....+||++|+|||
T Consensus 211 ~~~~~~~~~~~~~~Gt~~Y~APE 233 (412)
T 2vd5_A 211 KLRADGTVRSLVAVGTPDYLSPE 233 (412)
T ss_dssp ECCTTSCEECSSCCSCGGGCCHH
T ss_pred eccCCCccccceeccccCcCCHH
Confidence 87554332 34568999999999
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.08 E-value=6.7e-11 Score=125.86 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=34.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++.+||+|||+++...... ......||.+|+|||
T Consensus 148 p~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE 189 (326)
T 1blx_A 148 PQNILVTSSGQIKLADFGLARIYSFQM-ALTSVVVTLWYRAPE 189 (326)
T ss_dssp GGGEEECTTCCEEECSCCSCCCCCGGG-GGCCCCCCCTTCCHH
T ss_pred HHHeEEcCCCCEEEecCcccccccCCC-CccccccccceeCHH
Confidence 899999999999999999998764322 234567999999999
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.9e-11 Score=125.62 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=64.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC--C--CC--cchHHHHhcc---------c--CCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA--K--HP--QEILSLFSST---------S--DPHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE--~--~~--~~~l~~~~~~---------~--~~~~ 754 (818)
|+||+++.++.+||+|||+++....... ......||.+|+||| . .. ....+.|+.. . +...
T Consensus 137 p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 216 (305)
T 2wtk_C 137 PGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD 216 (305)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 8999999999999999999997753322 224567999999999 1 11 1123334311 1 1111
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
...++......... ..+......+.+++..|++.||++||++.|+++.
T Consensus 217 ~~~~~~~~i~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 217 NIYKLFENIGKGSY-AIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp SHHHHHHHHHHCCC-CCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred hHHHHHHHHhcCCC-CCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 11111110000000 0011123345677889999999999999999953
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-11 Score=125.84 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=59.7
Q ss_pred ccccccCCCCcccccccccceeccCCC--------------CCccccccccceeCCC---CC--CcchHHHHhcc-----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--------------SNRTLIAGTYRYIAPA---KH--PQEILSLFSST----- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--------------~~~~~~~gt~gy~aPE---~~--~~~~l~~~~~~----- 749 (818)
|+|||++.++.+||+|||+++...... .......||..|+||| .. .....+.|+..
T Consensus 144 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~ 223 (303)
T 1zy4_A 144 PMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFE 223 (303)
T ss_dssp GGGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHH
T ss_pred HHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHH
Confidence 899999999999999999998764321 1224567999999999 11 22233334321
Q ss_pred ---cCCCc-cccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 750 ---SDPHI-TLTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 750 ---~~~~~-~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.+... ...+ +.......+. .........+.+++..|++.||++||++.++++.
T Consensus 224 l~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 224 MIYPFSTGMERVNILKKLRSVSIEFPP-DFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HHSCCSSHHHHHHHHHHHHSTTCCCCT-TCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHhccCCchhHHHHHHhccccccccCc-cccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 11100 0000 1111111000 1122233456678889999999999999999863
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.08 E-value=7.8e-11 Score=128.97 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=59.4
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Ccc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~ 755 (818)
++|||+|. ++.+||+|||+++...... ..+..+||.+|+||| ....+ ..+.|+.. ..+ ...
T Consensus 189 p~Nill~~~~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 267 (400)
T 1nxk_A 189 PENLLYTSKRPNAILKLTDFGFAKETTSHN-SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNH 267 (400)
T ss_dssp GGGEEESSSSTTCCEEECCCTTCEECC------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCT
T ss_pred cceEEEecCCCCccEEEEecccccccCCCC-ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence 89999998 7899999999999764332 234568999999999 22222 33444321 111 110
Q ss_pred ccc--------eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 LTY--------ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ~~~--------~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
... +......... .........+.+++..|++.||++||++.||++.
T Consensus 268 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 268 GLAISPGMKTRIRMGQYEFPN-PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp TCSSCCSHHHHHHHTCCCCCT-TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred cccccHHHHHHHHcCcccCCC-cccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 000 1111111110 0111223456678889999999999999999863
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-11 Score=129.34 Aligned_cols=41 Identities=34% Similarity=0.441 Sum_probs=32.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++..... ......||.+|+|||
T Consensus 160 p~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~gt~~y~aPE 200 (360)
T 3eqc_A 160 PSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPE 200 (360)
T ss_dssp GGGEEECTTCCEEECCCCCCHHHHHH--C----CCCCTTCCHH
T ss_pred HHHEEECCCCCEEEEECCCCcccccc--cccCCCCCCCeECHH
Confidence 89999999999999999999765332 223457999999999
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=123.44 Aligned_cols=102 Identities=24% Similarity=0.294 Sum_probs=65.5
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC----CCCcc-hHHHHhc---------ccCCCccccc
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQE-ILSLFSS---------TSDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~-~l~~~~~---------~~~~~~~~~~ 758 (818)
++||+++ +++.+||+|||+++..... ......||.+|+||| ..... ..+.|+. ...+.....+
T Consensus 167 p~Nil~~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 244 (312)
T 2iwi_A 167 DENILIDLRRGCAKLIDFGSGALLHDE--PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE 244 (312)
T ss_dssp GGGEEEETTTTEEEECCCSSCEECCSS--CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH
T ss_pred hhhEEEeCCCCeEEEEEcchhhhcccC--cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH
Confidence 8999999 8999999999999987543 234567999999999 22111 2333431 1122111222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+.+...... ......+.+++..|++.+|++||++.||++
T Consensus 245 ~~~~~~~~~-----~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 245 ILEAELHFP-----AHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp HHHTCCCCC-----TTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HhhhccCCc-----ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 222222211 112234567788999999999999999987
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-10 Score=123.91 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=29.0
Q ss_pred ccccccCCCCc---ccccccccceeccCCCC-------CccccccccceeCCC
Q 003465 694 FNNILLNSEFE---AFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~---~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE 736 (818)
|+|||++.+.. +||+|||+++....... .....+||..|+|||
T Consensus 139 p~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE 191 (316)
T 2ac3_A 139 PENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPE 191 (316)
T ss_dssp GGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHH
T ss_pred HHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChH
Confidence 89999998876 99999999987643211 123456999999999
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=129.09 Aligned_cols=109 Identities=23% Similarity=0.340 Sum_probs=59.3
Q ss_pred ccccccC-----CCCcccccccccceeccCCC---CCccccccccceeCCCC-------CCcchHHHHhcc---------
Q 003465 694 FNNILLN-----SEFEAFFGNFGVARLLNSDS---SNRTLIAGTYRYIAPAK-------HPQEILSLFSST--------- 749 (818)
Q Consensus 694 ~~NILLd-----~~~~~ki~DFGla~~~~~~~---~~~~~~~gt~gy~aPE~-------~~~~~l~~~~~~--------- 749 (818)
|+|||++ ....+||+|||+|+...... ...+..+||++|+|||. .++...+.|+..
T Consensus 146 p~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~ 225 (432)
T 3p23_A 146 PHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISE 225 (432)
T ss_dssp TTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTT
T ss_pred HHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcC
Confidence 8999994 44568899999999875432 22356789999999991 111134444321
Q ss_pred -cCCCc-cccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 750 -SDPHI-TLTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 750 -~~~~~-~~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+.. ....... .................+.+++..|++.+|++||++.||++
T Consensus 226 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 226 GSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp SCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCcchhhHHHHHHHhccCCccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 11111 0000000 00000000011122334567888999999999999999983
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=7.8e-11 Score=123.88 Aligned_cols=109 Identities=21% Similarity=0.296 Sum_probs=59.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC-----CccccccccceeCCC-----CCCcchHHHHhc---------ccCC--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-----NRTLIAGTYRYIAPA-----KHPQEILSLFSS---------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-----~~~~~~gt~gy~aPE-----~~~~~~l~~~~~---------~~~~-- 752 (818)
|+||++++++.+||+|||+++....... ......||.+|+||| .......+.|+. ...+
T Consensus 149 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 228 (303)
T 2vwi_A 149 AGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYH 228 (303)
T ss_dssp GGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred hhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence 8999999999999999999987643321 123567999999999 111222233321 1111
Q ss_pred Ccccccee----cc---cCCCcC--ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 HITLTYIL----DQ---RISPPK--KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 ~~~~~~~~----d~---~l~~~~--~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.....+.. .. .+.... ..........+.+++..|++.+|++||++.++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 229 KYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp TSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 10000000 00 000000 0000111234667888999999999999999986
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-10 Score=122.07 Aligned_cols=101 Identities=27% Similarity=0.293 Sum_probs=50.1
Q ss_pred ecccCc-ccccCCCCCCCCCCCCcEEECcC-CCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccC
Q 003465 130 LDLSHN-NLTGTIPSKLGNLNNLVELYLSR-SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207 (818)
Q Consensus 130 L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 207 (818)
++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 555 3454 55555555555553 5555444445555555555555555555544444555555555555555
Q ss_pred cCCccCCccccCCCCCCEEEccCCcC
Q 003465 208 QINGCIPLDFGNLRHLKEVDLSGNKL 233 (818)
Q Consensus 208 ~l~~~~~~~l~~l~~L~~L~l~~n~l 233 (818)
++++..+..|..++ |+.|+|.+|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 55433333333332 44444444433
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=120.66 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=60.8
Q ss_pred ccccccCCCC----cccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCC--Cc
Q 003465 694 FNNILLNSEF----EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~----~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~--~~ 754 (818)
|+||+++.+. .+||+|||+++...... ......||.+|+||| .......+.|+. ...+ ..
T Consensus 136 p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 214 (283)
T 3bhy_A 136 PENIMLLDKNVPNPRIKLIDFGIAHKIEAGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGE 214 (283)
T ss_dssp GGGEEESCSSSSSCCEEECCCTTCEECC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred hHHEEEecCCCCCCceEEEecccceeccCCC-cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCc
Confidence 8999999887 89999999998765432 233457999999999 222222333321 1111 11
Q ss_pred cccceecccCCC--cC-ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 TLTYILDQRISP--PK-KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~~~~~~d~~l~~--~~-~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+........ .. ..........+.+++..|++.+|++||++.|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 215 TKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp SHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred chHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 111111100000 00 0001112345667888999999999999999986
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=124.51 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=33.1
Q ss_pred ccccccCC-------------------CCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNS-------------------EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~-------------------~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++. ++.+||+|||+++..... ....+||.+|+|||
T Consensus 146 p~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE 204 (339)
T 1z57_A 146 PENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEH---HSTLVSTRHYRAPE 204 (339)
T ss_dssp GGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSC---CCSSCSCGGGCCHH
T ss_pred HHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccc---cccccCCccccChH
Confidence 89999998 678999999999875432 23467999999999
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-11 Score=130.67 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=70.3
Q ss_pred cccccc----CCCCcccccccccceeccCCCCCccccccccceeCCCC-----------CCcc-hHHHHhc---------
Q 003465 694 FNNILL----NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-----------HPQE-ILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILL----d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-----------~~~~-~l~~~~~--------- 748 (818)
|+|||+ |.++.+||+|||+|+...... ......||.+|+|||. .+.+ ..+.|+.
T Consensus 140 p~NIll~~~~~~~~~~kL~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~t 218 (396)
T 4eut_A 140 PGNIMRVIGEDGQSVYKLTDFGAARELEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT 218 (396)
T ss_dssp GGGEEEEECTTSCEEEEECCGGGCEECCCGG-GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHEEEeecCCCceeEEEecCCCceEccCCC-ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHH
Confidence 899999 889999999999999875432 2234679999999991 1111 2233321
Q ss_pred ccCCC------ccccceec-------------------------ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 749 TSDPH------ITLTYILD-------------------------QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 749 ~~~~~------~~~~~~~d-------------------------~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
...+. ....+++. +.+.... .........+..+...|++.||++||++
T Consensus 219 g~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~ll~~~L~~dP~~R~s~ 297 (396)
T 4eut_A 219 GSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSC-SLSRGLQVLLTPVLANILEADQEKCWGF 297 (396)
T ss_dssp SSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTC-SSCHHHHHHHHHHHHHHSCCCTTTSCCH
T ss_pred CCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCccc-ccchHHHhhchHHHHHhhccChhhhccH
Confidence 11110 00000000 0111110 1124455566788889999999999999
Q ss_pred HHHHHHHccC
Q 003465 798 QRVSQEFLKF 807 (818)
Q Consensus 798 ~~V~~~L~~~ 807 (818)
.|+++.++.+
T Consensus 298 ~e~l~~l~~i 307 (396)
T 4eut_A 298 DQFFAETSDI 307 (396)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999877
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=6.5e-11 Score=123.25 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=62.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhc---------ccCC--Ccccc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TSDP--HITLT- 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~~~--~~~~~- 757 (818)
|+||+++.++.+||+|||+++..... ......||.+|+||| .. .....+.|+. ...+ .....
T Consensus 142 p~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~ 219 (284)
T 2vgo_A 142 PENLLMGYKGELKIADFGWSVHAPSL--RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE 219 (284)
T ss_dssp GGGEEECTTCCEEECCCTTCEECSSS--CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred HHHEEEcCCCCEEEecccccccCccc--ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH
Confidence 89999999999999999999865432 233467999999999 11 1122233321 1111 11111
Q ss_pred ---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 ---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+....... +......+.+++..|++.+|++||++.++++
T Consensus 220 ~~~~~~~~~~~~-----~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 220 THRRIVNVDLKF-----PPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp HHHHHHTTCCCC-----CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHhccccCC-----CCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 111111111 1111234556778999999999999999985
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-11 Score=128.92 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=66.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc----------ccCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~--~~~~~ 757 (818)
|+|||++.++.+||+|||+++...... ......+|.+|+||| ..+ ....+.|+. ...+ .....
T Consensus 170 p~NIl~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~ 248 (327)
T 1fvr_A 170 ARNILVGENYVAKIADFGLSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA 248 (327)
T ss_dssp GGGEEECGGGCEEECCTTCEESSCEEC-CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH
T ss_pred cceEEEcCCCeEEEcccCcCccccccc-cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHH
Confidence 899999999999999999998543221 223456788999999 121 112223321 1111 11111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
++.+....+.....+......+.+++..|++.+|++||++.++++.|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 298 (327)
T 1fvr_A 249 ELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 298 (327)
T ss_dssp HHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11111110000011122334566788899999999999999999999987
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=125.09 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=33.3
Q ss_pred cccccc-------------------CCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILL-------------------NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL-------------------d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+ +.++.+||+|||+++..... .....||.+|+|||
T Consensus 151 p~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE 209 (355)
T 2eu9_A 151 PENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEH---HTTIVATRHYRPPE 209 (355)
T ss_dssp GGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSC---CCSSCSCGGGCCHH
T ss_pred HHHEEEecccccccccccccccccccCCCcEEEeecCcccccccc---ccCCcCCCcccCCe
Confidence 899999 67899999999999875432 23467999999999
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.3e-11 Score=134.12 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=65.3
Q ss_pred cccccc---CCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcchHHHHhc---------c--cCCCccc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQEILSLFSS---------T--SDPHITL 756 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~~l~~~~~---------~--~~~~~~~ 756 (818)
|+|||+ +.++.+||+|||+|+...... .....+||++|+||| .......+.|+. . .+.....
T Consensus 154 p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 232 (484)
T 3nyv_A 154 PENLLLESKSKDANIRIIDFGLSTHFEASK-KMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANE 232 (484)
T ss_dssp GGGEEESSSSTTCCEEECCTTHHHHBCCCC-SHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHHEEEecCCCCCcEEEEeeeeeEEccccc-ccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCH
Confidence 899999 567899999999998765433 334567999999999 222223334431 1 1111111
Q ss_pred cc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+ +......... +.+......+.++...|++.+|++||++.|+++
T Consensus 233 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 233 YDILKKVEKGKYTFEL-PQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp HHHHHHHHHCCCCCCS-GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHcCCCCCCC-cccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 11 1111111111 111222345667788999999999999999984
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-10 Score=132.01 Aligned_cols=107 Identities=19% Similarity=0.130 Sum_probs=64.2
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCC--CCCcc-hHHHHhcc-----------cCCCccc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--KHPQE-ILSLFSST-----------SDPHITL 756 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~~~~~-~l~~~~~~-----------~~~~~~~ 756 (818)
|+|||++. ++.+||+|||+|+...... .....+||++|+||| +.+.+ ..+.|+.. .+.....
T Consensus 164 p~Nil~~~~~~~~~~kl~DfG~a~~~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 242 (494)
T 3lij_A 164 PENLLLESKEKDALIKIVDFGLSAVFENQK-KMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTD 242 (494)
T ss_dssp GGGEEESCSSTTCCEEECCCTTCEECBTTB-CBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred hhhEEEeCCCCCCcEEEEECCCCeECCCCc-cccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 89999976 4559999999999875443 234567999999999 22222 33344321 1111111
Q ss_pred ccee----cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYIL----DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~----d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+++ ........ +........+.++...|++.+|++||++.|+++
T Consensus 243 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 243 QEILRKVEKGKYTFDS-PEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp HHHHHHHHHTCCCCCS-GGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHhCCCCCCc-hhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 1111 11111111 111122334567778999999999999999874
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.5e-11 Score=123.74 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=65.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---------CCc-chHHHHhc---------ccCC--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---------HPQ-EILSLFSS---------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---------~~~-~~l~~~~~---------~~~~-- 752 (818)
|+||+++.++.+||+|||+++...... ......||.+|+|||. .+. ...+.|+. ...+
T Consensus 152 p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~ 230 (298)
T 1phk_A 152 PENILLDDDMNIKLTDFGFSCQLDPGE-KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW 230 (298)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred cceEEEcCCCcEEEecccchhhcCCCc-ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCc
Confidence 899999999999999999998875433 2345679999999991 111 12333321 1111
Q ss_pred Cccccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 HITLTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 ~~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.....+ +......... +........+.+++..|++.+|++||++.|+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 231 HRKQMLMLRMIMSGNYQFGS-PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CSSHHHHHHHHHHTCCCCCT-TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CccHHHHHHHHhcCCcccCc-ccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 111111 1111111111 111223345677888999999999999999875
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=130.97 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=63.5
Q ss_pred ccccccC---CCCcccccccccceeccCCCCCccccccccceeCCC--CCCcc-hHHHHhc---------ccCC--Cccc
Q 003465 694 FNNILLN---SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--KHPQE-ILSLFSS---------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd---~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~~~~~-~l~~~~~---------~~~~--~~~~ 756 (818)
|+|||++ .++.+||+|||+|+...... .....+||++|+||| +...+ ..+.|+. ...+ ....
T Consensus 149 p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 227 (486)
T 3mwu_A 149 PENILLESKEKDCDIKIIDFGLSTCFQQNT-KMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE 227 (486)
T ss_dssp GGGEEESSSSTTCCEEECSCSCTTTBCCC-----CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred hHHEEEecCCCCCCEEEEECCcCeECCCCC-ccCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 8999995 56679999999998765432 234567999999999 22222 3334432 1111 1111
Q ss_pred ccee----cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 757 TYIL----DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 757 ~~~~----d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.+++ ........ +.+......+.+++..|++.+|++||++.|+++.
T Consensus 228 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 228 YDILKRVETGKYAFDL-PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp HHHHHHHHHTCCCSCS-GGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred HHHHHHHHhCCCCCCC-cccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 1111 11111111 1112223445677889999999999999999863
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-10 Score=120.14 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=63.6
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC---CCCcchHHHHhc---------ccCCC---cccc
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQEILSLFSS---------TSDPH---ITLT 757 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~~l~~~~~---------~~~~~---~~~~ 757 (818)
|+|||++ +++.+||+|||+++.... .......||.+|+||| .......+.|+. ...+. ....
T Consensus 159 p~Nil~~~~~~~~kl~Dfg~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~ 236 (290)
T 1t4h_A 159 CDNIFITGPTGSVKIGDLGLATLKRA--SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAA 236 (290)
T ss_dssp GGGEEESSTTSCEEECCTTGGGGCCT--TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH
T ss_pred HHHEEEECCCCCEEEeeCCCcccccc--cccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHH
Confidence 7899998 889999999999975432 2334567999999999 222223333331 11111 1111
Q ss_pred ceecccCCCcC-ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPK-KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~-~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
++......... ...+......+.+++..|++.+|++||++.||++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 237 QIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 11111111100 0011112245677888999999999999999985
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.6e-11 Score=125.03 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=63.1
Q ss_pred ccccccCCCCcccccccccceeccCC-----CCCccccccccceeCCC--CC----------Ccc-hHHHHhc-------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD-----SSNRTLIAGTYRYIAPA--KH----------PQE-ILSLFSS------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~-----~~~~~~~~gt~gy~aPE--~~----------~~~-~l~~~~~------- 748 (818)
|+|||+| ++.+||+|||+++..... ........||.+|+||| +. +.+ ..+.|+.
T Consensus 158 p~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el 236 (319)
T 2y4i_B 158 SKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYEL 236 (319)
T ss_dssp STTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHH
T ss_pred hhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHH
Confidence 8999999 679999999998865321 12234456999999999 11 111 2333431
Q ss_pred --ccCC--Cccccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 749 --TSDP--HITLTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 749 --~~~~--~~~~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
...+ .....++.. ....... ........+.+++..|++.+|++||++.+|+++|+.+..
T Consensus 237 ~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~ 302 (319)
T 2y4i_B 237 HAREWPFKTQPAEAIIWQMGTGMKPNL--SQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPK 302 (319)
T ss_dssp HHSSCSSSSCCHHHHHHHHHTTCCCCC--CCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC--
T ss_pred HhCCCCCCCCCHHHHHHHhccCCCCCC--CcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 1111 111111110 0010000 000112345677889999999999999999999999943
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=123.76 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=32.2
Q ss_pred ccccccC-CCCcccccccccceeccCCC---CCccccccccceeCCC
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDS---SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~---~~~~~~~gt~gy~aPE 736 (818)
|+|||+| +++.+||+|||+++...... .......||..|+|||
T Consensus 148 p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE 194 (320)
T 2i6l_A 148 PANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPR 194 (320)
T ss_dssp GGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHH
T ss_pred HHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcH
Confidence 8999997 67899999999999764321 1234556899999999
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=128.72 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=33.7
Q ss_pred ccccccCCC-CcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSE-FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~-~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.+ ..+||+|||+|+.+..... ....+||.+|+|||
T Consensus 184 p~NILl~~~~~~~kl~DFG~a~~~~~~~~-~~~~~~t~~y~aPE 226 (420)
T 1j1b_A 184 PQNLLLDPDTAVLKLCDFGSAKQLVRGEP-NVSYICSRYYRAPE 226 (420)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCTTCC-CCSCCSCTTSCCHH
T ss_pred hhhEEEeCCCCeEEeccchhhhhcccCCC-ceeeeeCCCcCCHH
Confidence 899999965 6789999999998754332 33457899999999
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.7e-11 Score=136.01 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=63.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCCCccc----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDPHITL---- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~~~~~---- 756 (818)
|+|||+|.++++||+|||+|+...... ..+..+||++|+||| ..+.+ ..+.|+.. ..+....
T Consensus 314 PeNILld~~g~vKL~DFGla~~~~~~~-~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~ 392 (576)
T 2acx_A 314 PENILLDDHGHIRISDLGLAVHVPEGQ-TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI 392 (576)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCTTC-CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC
T ss_pred hheEEEeCCCCeEEEecccceecccCc-cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch
Confidence 899999999999999999999875443 234468999999999 22222 34445321 1111100
Q ss_pred --cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 757 --TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 757 --~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
.++......... ..+......+..++..|++.||++|| ++.||.+
T Consensus 393 ~~~~i~~~i~~~~~-~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 393 KREEVERLVKEVPE-EYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp CHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred hHHHHHHHhhcccc-cCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 001000000000 00111123456677799999999999 6777763
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=127.31 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 773 VQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 773 ~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+....+.+++..|++.||++||++.||++
T Consensus 362 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 362 QEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp HHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred hhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 345566778999999999999999999985
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=7e-11 Score=129.88 Aligned_cols=43 Identities=30% Similarity=0.386 Sum_probs=28.9
Q ss_pred cccccc----CCCCcccccccccceeccCCC---CCccccccccceeCCC
Q 003465 694 FNNILL----NSEFEAFFGNFGVARLLNSDS---SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL----d~~~~~ki~DFGla~~~~~~~---~~~~~~~gt~gy~aPE 736 (818)
|+|||+ ++++.+||+|||+|+...... ......+||++|+|||
T Consensus 156 p~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE 205 (405)
T 3rgf_A 156 PANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPE 205 (405)
T ss_dssp GGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHH
T ss_pred HHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCch
Confidence 899999 788999999999999775432 2234578999999999
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-10 Score=124.29 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=30.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++..... .+...||.+|+|||
T Consensus 154 p~NIl~~~~~~~kl~Dfg~~~~~~~~---~~~~~~t~~y~aPE 193 (353)
T 3coi_A 154 PGNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPE 193 (353)
T ss_dssp GGGEEECTTCCEEECSTTCTTC-----------CCSBCCSCHH
T ss_pred HHHEeECCCCcEEEeecccccCCCCC---ccccccCcCcCCHH
Confidence 89999999999999999999865432 33467899999999
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.6e-11 Score=127.12 Aligned_cols=103 Identities=6% Similarity=-0.032 Sum_probs=62.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC--C---CCcc-hHHHHhc---------ccCCCccc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--K---HPQE-ILSLFSS---------TSDPHITL-- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~---~~~~-~l~~~~~---------~~~~~~~~-- 756 (818)
|+|||+|.++.+||+|||+|+..... .....||++|+||| . .+.+ ..+.|+. ...+....
T Consensus 222 p~NIll~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~ 298 (371)
T 3q60_A 222 PDNLFIMPDGRLMLGDVSALWKVGTR---GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTP 298 (371)
T ss_dssp GGGEEECTTSCEEECCGGGEEETTCE---EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCT
T ss_pred HHHEEECCCCCEEEEecceeeecCCC---ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCc
Confidence 89999999999999999999976322 22456779999999 2 1222 3334431 11111100
Q ss_pred --ccee---------cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 --TYIL---------DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 --~~~~---------d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.... ........ .......+.+++..|++.+|++||++.|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 299 GIKGSWKRPSLRVPGTDSLAFGS---CTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp TCTTCCCBCCTTSCCCCSCCCTT---SSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred ccccchhhhhhhhccccccchhh---ccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000 01111110 1122345667788999999999999999863
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-10 Score=128.66 Aligned_cols=109 Identities=24% Similarity=0.286 Sum_probs=61.2
Q ss_pred ccccccCC-------------CCcccccccccceeccCCCC----CccccccccceeCCC--C--------CC-cchHHH
Q 003465 694 FNNILLNS-------------EFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA--K--------HP-QEILSL 745 (818)
Q Consensus 694 ~~NILLd~-------------~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE--~--------~~-~~~l~~ 745 (818)
|+|||++. ++.+||+|||+++....+.. .....+||++|+||| . .. +...+.
T Consensus 143 p~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Di 222 (434)
T 2rio_A 143 PQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDI 222 (434)
T ss_dssp GGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHH
T ss_pred hHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhh
Confidence 89999965 45899999999998765422 124568999999999 1 11 123333
Q ss_pred Hhc----------ccCCCcc----ccceecccCCCc--CccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 746 FSS----------TSDPHIT----LTYILDQRISPP--KKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 746 ~~~----------~~~~~~~----~~~~~d~~l~~~--~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
|+. ...+... ...++....... ...........+.+++..|++.+|++||++.||++
T Consensus 223 wSlG~il~ellt~g~~Pf~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 223 FSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHHHHHHHHHTTSCCTTCSTTTHHHHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HhHHHHHHHHHhCCCCCCCCchhhHHHHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 431 1111110 011111111111 00112334456778889999999999999999985
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-10 Score=129.15 Aligned_cols=107 Identities=19% Similarity=0.103 Sum_probs=64.9
Q ss_pred ccccccCCCC---cccccccccceeccCCCCCccccccccceeCCC--CCC-cchHHHHhcc-----------cCCCccc
Q 003465 694 FNNILLNSEF---EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--KHP-QEILSLFSST-----------SDPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~---~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~~~-~~~l~~~~~~-----------~~~~~~~ 756 (818)
|+|||++.+. .+||+|||+|+...... .....+||++|+||| +.+ +...+.|+.. .+.....
T Consensus 174 p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 252 (504)
T 3q5i_A 174 PENILLENKNSLLNIKIVDFGLSSFFSKDY-KLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQND 252 (504)
T ss_dssp GGGEEESSTTCCSSEEECCCTTCEECCTTS-CBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHHEEEecCCCCccEEEEECCCCEEcCCCC-ccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 8999998775 69999999999875443 234567999999999 222 2233444321 1111111
Q ss_pred cceecc----cCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYILDQ----RISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~d~----~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+++.. ...... +.+......+.++...|++.+|++||++.|+++
T Consensus 253 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 253 QDIIKKVEKGKYYFDF-NDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp HHHHHHHHHCCCCCCH-HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCCCCCc-cccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 111111 111110 001112244667888999999999999999984
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-10 Score=124.66 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=33.9
Q ss_pred ccccccCCCCcccccccccceeccCCC-------CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-------SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-------~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||.+....... ......+||..|+|||
T Consensus 156 p~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE 205 (389)
T 3gni_B 156 ASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPE 205 (389)
T ss_dssp GGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHH
T ss_pred HHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHH
Confidence 899999999999999999987653221 1123457999999999
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-10 Score=121.57 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=55.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC------C---cchHHHHhc---------ccCCCc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH------P---QEILSLFSS---------TSDPHI- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~------~---~~~l~~~~~---------~~~~~~- 754 (818)
|+||+++.++.+||+|||+++...... ......||.+|+|||.. . ....+.|+. ...+..
T Consensus 153 p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 231 (318)
T 2dyl_A 153 PSNILLDERGQIKLCDFGISGRLVDDK-AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKN 231 (318)
T ss_dssp GGGEEECTTSCEEECCCTTC---------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred HHHEEECCCCCEEEEECCCchhccCCc-cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCC
Confidence 899999999999999999998764432 23345799999999911 1 112333321 111111
Q ss_pred --cccceecccCCCcC--ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 --TLTYILDQRISPPK--KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 --~~~~~~d~~l~~~~--~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+++...+.... .+........+.+++..|++.+|.+||++.++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 232 CKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 00111111100000 0000112234667778999999999999999875
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-10 Score=123.97 Aligned_cols=108 Identities=20% Similarity=0.148 Sum_probs=63.4
Q ss_pred ccccccCCC----CcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCC---
Q 003465 694 FNNILLNSE----FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPH--- 753 (818)
Q Consensus 694 ~~NILLd~~----~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~--- 753 (818)
|+|||+.++ ..+||+|||+++............+||.+|+||| ..+.+ ..+.|+. ...+.
T Consensus 144 p~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 223 (342)
T 2qr7_A 144 PSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANG 223 (342)
T ss_dssp GGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred HHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCC
Confidence 899998433 3599999999998765544455678999999999 11111 2333431 11111
Q ss_pred --ccccceec----ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 --ITLTYILD----QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 --~~~~~~~d----~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+++. ....... ..+......+.++...|++.||++||++.||++
T Consensus 224 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 224 PDDTPEEILARIGSGKFSLSG-GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp TTSCHHHHHHHHHHCCCCCCS-TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CcCCHHHHHHHHccCCcccCc-cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 01111111 1111110 001112234556777999999999999999875
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-10 Score=125.05 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=64.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-Ccc--hHHHHhc---------cc--CCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQE--ILSLFSS---------TS--DPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~--~l~~~~~---------~~--~~~~~~ 756 (818)
|+||+++.++.+||+|||+++..... ......||.+|+||| .. +.+ ..+.|+. .. +.....
T Consensus 180 p~Nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 257 (348)
T 2pml_X 180 PSNILMDKNGRVKLSDFGESEYMVDK--KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS 257 (348)
T ss_dssp GGGEEECTTSCEEECCCTTCEECBTT--EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC
T ss_pred hHhEEEcCCCcEEEeccccccccccc--cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence 88999999999999999999876443 234567999999999 22 221 2333431 11 111100
Q ss_pred -ccee----cccCCCcCc--------------cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 -TYIL----DQRISPPKK--------------QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 -~~~~----d~~l~~~~~--------------~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.++. ......... .........+.+++..|++.+|++||++.|+++
T Consensus 258 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 258 LVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp SHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1111 111110000 000122345667888999999999999999986
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-10 Score=123.35 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=62.8
Q ss_pred ccccccCCCCc---ccccccccceeccCCCCCccccccccceeCCCC------CCc-chHHHHhc---------ccCC--
Q 003465 694 FNNILLNSEFE---AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK------HPQ-EILSLFSS---------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~~~~---~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~------~~~-~~l~~~~~---------~~~~-- 752 (818)
|+|||++.+.. +||+|||+++...... ......||.+|+|||. .+. ...+.|+. ...+
T Consensus 142 p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 220 (322)
T 2ycf_A 142 PENVLLSSQEEDCLIKITDFGHSKILGETS-LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFS 220 (322)
T ss_dssp GGGEEESSSSSSCCEEECCCTTCEECCCCH-HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred HHHEEEecCCCCCeEEEccCccceeccccc-ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence 89999987665 9999999999764321 2234679999999992 111 12333431 1111
Q ss_pred Ccccc-ce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 HITLT-YI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 ~~~~~-~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..... .+ ......... .........+.+++..|++.+|++||++.++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 221 EHRTQVSLKDQITSGKYNFIP-EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp STTCSSCHHHHHHHTCCCCCH-HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccchHHHHHHHHHhCccccCc-hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 11000 11 111111000 001122345677888999999999999999874
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-10 Score=125.11 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=35.0
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+| .++.+||+|||+|+....... .....||.+|+|||
T Consensus 169 p~Nill~~~~~~~kL~DFG~a~~~~~~~~-~~~~~~t~~y~aPE 211 (394)
T 4e7w_A 169 PQNLLLDPPSGVLKLIDFGSAKILIAGEP-NVSYICSRYYRAPE 211 (394)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCTTCC-CCSSCSCGGGCCHH
T ss_pred HHHEEEcCCCCcEEEeeCCCcccccCCCC-CcccccCcCccCHH
Confidence 8999999 899999999999998754432 33457899999999
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-10 Score=124.15 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=34.5
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+| .++.+||+|||+|+.+..... .....||.+|+|||
T Consensus 169 p~Nil~~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~t~~y~aPE 211 (383)
T 3eb0_A 169 PQNLLVNSKDNTLKLCDFGSAKKLIPSEP-SVAYICSRFYRAPE 211 (383)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCTTSC-CCCCCCCSSCCCHH
T ss_pred HHHEEEcCCCCcEEEEECCCCcccCCCCC-CcCcccCCCccCHH
Confidence 8999998 689999999999997754432 33457899999999
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.5e-10 Score=122.74 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=32.6
Q ss_pred cccccc------CCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILL------NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL------d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+ +..+.+||+|||+++..... .+...||.+|+|||
T Consensus 160 p~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE 205 (373)
T 1q8y_A 160 PENVLMEIVDSPENLIQIKIADLGNACWYDEH---YTNSIQTREYRSPE 205 (373)
T ss_dssp GGGEEEEEEETTTTEEEEEECCCTTCEETTBC---CCSCCSCGGGCCHH
T ss_pred hHHeEEeccCCCcCcceEEEcccccccccCCC---CCCCCCCccccCcH
Confidence 899999 55668999999999876533 23457999999999
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.6e-10 Score=117.84 Aligned_cols=107 Identities=20% Similarity=0.133 Sum_probs=62.6
Q ss_pred ccccccCCC---CcccccccccceeccCCCCCccccccccceeCCC---CCCcchHHHHhc---------ccCC--Cccc
Q 003465 694 FNNILLNSE---FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQEILSLFSS---------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~---~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~~l~~~~~---------~~~~--~~~~ 756 (818)
|+||+++.+ +.+||+|||+++....... .....||..|+||| .......+.|+. ...+ ....
T Consensus 149 p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~ 227 (287)
T 2wei_A 149 PENILLESKEKDCDIKIIDFGLSTCFQQNTK-MKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE 227 (287)
T ss_dssp GGGEEESCSSTTCCEEECSTTGGGTBCCCSS-CSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred hhhEEEecCCCcccEEEeccCcceeecCCCc-cccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCH
Confidence 899999764 4799999999987654322 23456999999999 222222233321 1111 1111
Q ss_pred cce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.++ ......... +........+.+++..|++.+|++||++.|+++
T Consensus 228 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 228 YDILKRVETGKYAFDL-PQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp HHHHHHHHHCCCCCCS-GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCc-hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 111 111111111 111122345667888999999999999999986
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.1e-10 Score=120.25 Aligned_cols=106 Identities=18% Similarity=0.121 Sum_probs=47.8
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCCCC---Ccc-hHHHHhc---------ccCCC--cc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH---PQE-ILSLFSS---------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~---~~~-~l~~~~~---------~~~~~--~~ 755 (818)
|+|||++. ++.+||+|||+++..... ......||.+|+|||.. +.+ ..+.|+. ...+. ..
T Consensus 156 p~NIll~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 233 (336)
T 3fhr_A 156 PENLLYTSKEKDAVLKLTDFGFAKETTQN--ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNT 233 (336)
T ss_dssp GGGEEESCSSTTCCEEECCCTTCEEC------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred HHHEEEEecCCCceEEEeccccceecccc--ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence 89999986 455999999999876432 23346789999999922 111 2233321 11111 00
Q ss_pred ccc--------eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LTY--------ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~~--------~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... +......... +........+.+++..|++.+|++||++.|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 234 GQAISPGMKRRIRLGQYGFPN-PEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp -----------------CCCT-TTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred chhhhhhHHHhhhccccccCc-hhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000 0000000000 111123345667888999999999999999996
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-07 Score=102.18 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=46.1
Q ss_pred ccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 003465 337 IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416 (818)
Q Consensus 337 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 416 (818)
+..+..|+.+.+..+ +.......+.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++..-...|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 334444444444333 22222334444444444444322 2222233444455555555554444433334455555555
Q ss_pred EEecccCcCcccCCccccCCCCCCEEECcC
Q 003465 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSL 446 (818)
Q Consensus 417 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 446 (818)
.+.|..+ ++..-...|.++++|+.+.+..
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 5555432 3322233445555555555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-09 Score=127.13 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=63.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcchHHHHhcccC------CCccccceecccC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQEILSLFSSTSD------PHITLTYILDQRI 764 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~~l~~~~~~~~------~~~~~~~~~d~~l 764 (818)
|+|||++++ .+||+|||+++..... +...||++|+||| ..++...+.|+.... ............+
T Consensus 210 p~NIll~~~-~~kl~DFG~a~~~~~~----~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~ 284 (681)
T 2pzi_A 210 PENIMLTEE-QLKLIDLGAVSRINSF----GYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYVDGL 284 (681)
T ss_dssp GGGEEECSS-CEEECCCTTCEETTCC----SCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEECSSC
T ss_pred hHHeEEeCC-cEEEEecccchhcccC----CccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCcccccccc
Confidence 899999987 8999999999976433 3467999999999 233333344432110 0000001111111
Q ss_pred CCcCccchHHHHHHHHHHHHhccCCCCCCCCC-hHHHHHHHcc
Q 003465 765 SPPKKQKIVQDIALASIVALACLQSKPKSVPT-MQRVSQEFLK 806 (818)
Q Consensus 765 ~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-m~~V~~~L~~ 806 (818)
.... ........+.+++..|++.+|++||+ +.++...|..
T Consensus 285 ~~~~--~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 325 (681)
T 2pzi_A 285 PEDD--PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG 325 (681)
T ss_dssp CTTC--HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred cccc--cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence 1111 12223345677888999999999996 5555555544
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-07 Score=101.35 Aligned_cols=164 Identities=12% Similarity=0.088 Sum_probs=100.6
Q ss_pred CCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEE
Q 003465 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVD 347 (818)
Q Consensus 268 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 347 (818)
...+..+.+...... .....+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......+.++.+|+.+.
T Consensus 193 ~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 344444444332211 23344555666777766543 22233445666777777777654 3333445567777888887
Q ss_pred cCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcc
Q 003465 348 MSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTG 427 (818)
Q Consensus 348 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 427 (818)
+..+ +.......|.++++|+.+.+.++.++......|.++.+|+.+.|..+ ++..-...|.+|.+|+.+.+..+ ++.
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 7654 44344556777888888888777777666677888888888888654 55444567888888888887654 443
Q ss_pred cCCccccCCC
Q 003465 428 RIPSEIRNLS 437 (818)
Q Consensus 428 ~~p~~l~~l~ 437 (818)
.-...|.+++
T Consensus 347 I~~~aF~~c~ 356 (379)
T 4h09_A 347 IESGAFEGSS 356 (379)
T ss_dssp ECTTTTTTSS
T ss_pred EchhHhhCCC
Confidence 3344555554
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-09 Score=124.31 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=33.9
Q ss_pred ccccccCCCCc---ccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFE---AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~---~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.+.. +||+|||+++...... ......||.+|+|||
T Consensus 149 P~NILl~~~g~~~~vKL~DFG~a~~~~~~~-~~~~~~gt~~Y~APE 193 (676)
T 3qa8_A 149 PENIVLQPGPQRLIHKIIDLGYAKELDQGE-LCTEFVGTLQYLAPE 193 (676)
T ss_dssp STTEEEECCSSSCEEEECSCCCCCBTTSCC-CCCCCCSCCTTCSSC
T ss_pred HHHeEeecCCCceeEEEccccccccccccc-ccccccCCcccCChH
Confidence 89999996654 9999999999875443 234567999999999
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-09 Score=114.62 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=44.9
Q ss_pred CCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCC
Q 003465 436 LSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNN 515 (818)
Q Consensus 436 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N 515 (818)
+++|+.|+|++|.+.+..+..+.... ....|+.|+++.|.+.+..+. .++..+..+++|+.|+|++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~---~~~~L~~LdLs~n~L~d~G~~----------~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESD---ILPQLETMDISAGVLTDEGAR----------LLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCS---SGGGCSEEECCSSCCBHHHHH----------HHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCc---cCCCCCEEECCCCCCChHHHH----------HHHhhcccCCcceEEECCCC
Confidence 45556666655555443222222110 011455555555555443211 11223455677888888888
Q ss_pred cCccCCcccccC-CCCCCeeeCcCCC
Q 003465 516 SLDGTIPLEMGK-IIFLEYLDLSYNN 540 (818)
Q Consensus 516 ~l~~~~p~~l~~-l~~L~~L~ls~N~ 540 (818)
.++...-..+.. + ...++++.|+
T Consensus 318 ~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 318 YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 776554444433 2 3557777665
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-09 Score=113.91 Aligned_cols=139 Identities=21% Similarity=0.255 Sum_probs=70.6
Q ss_pred hhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCc--CCCCCCCEEeccC--CcCCCC-----C
Q 003465 311 PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTI--GDLTNLIYLDLSL--NQLSGP-----I 381 (818)
Q Consensus 311 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~--n~l~~~-----~ 381 (818)
..+..+|+|+.|+|++|.-. .++. +. +++|+.|++..|.+.......+ ..+|+|+.|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44455566666666655211 1222 22 5566666666665543222222 2456666666642 111111 0
Q ss_pred Cccc--CCCCCCCEEEccCCcCcccCCccc---cCCCCCCEEecccCcCccc----CCccccCCCCCCEEECcCCcCCcc
Q 003465 382 PSTF--GHLTLLKFLNLNSNKLNGSIPSEL---MNCFSLQSLILSNNSLTGR----IPSEIRNLSYLHELDLSLNFISGM 452 (818)
Q Consensus 382 ~~~~--~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 452 (818)
...+ ..+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+.++++|+.|++++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1112 245677777777776654322222 2356677777777776653 222334556777777777766543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-10 Score=115.18 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=65.3
Q ss_pred ccCCCcCce--ecccCcccc---cCCCCCCCCCCCCcEEECcCCCCCC--CCccccCCCCCCCEEEccCCCCCCCCccCC
Q 003465 121 IGALSKLQI--LDLSHNNLT---GTIPSKLGNLNNLVELYLSRSNLNG--PIPSTLGHLTRLSILDLSSNSLVGPIPFTL 193 (818)
Q Consensus 121 ~~~l~~L~~--L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 193 (818)
|...+.|+. ++++.|... ..++....++++|++|+|++|++++ .+|..+..+++|+.|+|++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 455555665 666666332 1112222457788888888888876 3345566788888888888888754 223
Q ss_pred CCCC--CCcEEEcccCcCCccCCc-------cccCCCCCCEEE
Q 003465 194 GHLT--QLTTLKLFSNQINGCIPL-------DFGNLRHLKEVD 227 (818)
Q Consensus 194 ~~l~--~L~~L~L~~n~l~~~~~~-------~l~~l~~L~~L~ 227 (818)
..+. +|++|+|++|.+.+.+|. .+..+++|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3333 778888888877754442 245666776664
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=98.55 E-value=7.1e-08 Score=102.83 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=33.2
Q ss_pred ccccccCCCC--------------------cccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEF--------------------EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~--------------------~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++ .+||+|||+|+..... ..+||..|+|||
T Consensus 190 p~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-----~~~gt~~y~aPE 247 (336)
T 2vuw_A 190 WGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-----IVVFCDVSMDED 247 (336)
T ss_dssp GGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-----EEECCCCTTCSG
T ss_pred HHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-----cEEEeecccChh
Confidence 8999999987 9999999999987532 347999999999
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-08 Score=114.35 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=36.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||||+++++||+|||+||....+....+..+||++|||||
T Consensus 367 PeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE 409 (569)
T 4azs_A 367 PWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNE 409 (569)
T ss_dssp GGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHH
T ss_pred hHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHH
Confidence 9999999999999999999998866655566788999999999
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-07 Score=99.69 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=23.3
Q ss_pred HHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 776 IALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 776 ~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.+++..|++.+|++||++.|+++
T Consensus 230 ~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 230 SEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 345667888999999999999999986
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.4e-08 Score=94.30 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=40.4
Q ss_pred CCCCCcEEECcCCCCCCC----CccccCCCCCCCEEEccCCCCCCC----CccCCCCCCCCcEEEc--ccCcCCcc----
Q 003465 147 NLNNLVELYLSRSNLNGP----IPSTLGHLTRLSILDLSSNSLVGP----IPFTLGHLTQLTTLKL--FSNQINGC---- 212 (818)
Q Consensus 147 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~---- 212 (818)
..++|++|+|++|.+.+. +...+...++|++|+|++|.+... +...+...++|++|+| ++|.+...
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 344444455544444321 122233344555555555554432 2333444555555555 55555432
Q ss_pred CCccccCCCCCCEEEccCCcC
Q 003465 213 IPLDFGNLRHLKEVDLSGNKL 233 (818)
Q Consensus 213 ~~~~l~~l~~L~~L~l~~n~l 233 (818)
+...+...++|++|++++|.+
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCcCEEeccCCCC
Confidence 222333445666666666654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-07 Score=89.51 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=25.1
Q ss_pred hhcCCcCCCEEEC--CCCcCccCC----cccccCCCCCCeeeCcCCCCc
Q 003465 500 EIGNCSGLLNVTL--SNNSLDGTI----PLEMGKIIFLEYLDLSYNNIP 542 (818)
Q Consensus 500 ~~~~l~~L~~L~L--s~N~l~~~~----p~~l~~l~~L~~L~ls~N~l~ 542 (818)
.+...++|+.|+| ++|.+.... ...+...+.|++|+|++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3444556666666 566666542 233444466777777777653
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=98.25 E-value=4.3e-07 Score=94.18 Aligned_cols=31 Identities=13% Similarity=-0.025 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 777 ALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 777 ~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+.+++..|++.||++| ++.|+++.|+++.
T Consensus 234 ~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~ 264 (286)
T 3uqc_A 234 FQISAVAARSVQGDGGIR-SASTLLNLMQQAT 264 (286)
T ss_dssp HHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCccC-CHHHHHHHHHHHh
Confidence 456778889999999999 9999999999873
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=87.50 Aligned_cols=106 Identities=24% Similarity=0.239 Sum_probs=78.2
Q ss_pred cCCCCCCcE--EEcCCCCCc---ccCCccccCCCcCceecccCccccc--CCCCCCCCCCCCcEEECcCCCCCCCCcccc
Q 003465 97 FSCFPNLES--FRIWYSNIS---GNIPSEIGALSKLQILDLSHNNLTG--TIPSKLGNLNNLVELYLSRSNLNGPIPSTL 169 (818)
Q Consensus 97 l~~l~~L~~--L~L~~n~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 169 (818)
|...+.|.. ++++.|... ..++....++++|+.|+|++|.+++ .+|..+..+++|++|+|++|++++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 455556665 677777432 2222233578999999999999997 3456677899999999999999864 334
Q ss_pred CCCC--CCCEEEccCCCCCCCCcc-------CCCCCCCCcEEEc
Q 003465 170 GHLT--RLSILDLSSNSLVGPIPF-------TLGHLTQLTTLKL 204 (818)
Q Consensus 170 ~~l~--~L~~L~L~~n~l~~~~~~-------~l~~l~~L~~L~L 204 (818)
..+. +|++|+|++|.+.+.+|. .+..+++|+.||-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4444 999999999999875552 3668899999873
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.83 E-value=4e-06 Score=78.48 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=44.6
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCC-CCCCCccccCCC----CCCCEEEccCCC-CCCCCccCCCCCCC
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN-LNGPIPSTLGHL----TRLSILDLSSNS-LVGPIPFTLGHLTQ 198 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 198 (818)
.+|+.|||++|.++..--..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. +++.--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777776665444445666666666666664 443322334433 246666666653 44332233444555
Q ss_pred CcEEEcccC
Q 003465 199 LTTLKLFSN 207 (818)
Q Consensus 199 L~~L~L~~n 207 (818)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.78 E-value=7.6e-06 Score=76.57 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=52.1
Q ss_pred CCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCc-CcccCCccccCC----CCCCEEecccCc-CcccCCccccCCCC
Q 003465 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNK-LNGSIPSELMNC----FSLQSLILSNNS-LTGRIPSEIRNLSY 438 (818)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 438 (818)
..|+.||+++|.++...-..+..+++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +++.--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666665444455667777777777764 554333334443 367777777774 66544445666777
Q ss_pred CCEEECcCCc
Q 003465 439 LHELDLSLNF 448 (818)
Q Consensus 439 L~~L~Ls~N~ 448 (818)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=4.4e-06 Score=94.58 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=33.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-------ccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-------RTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-------~~~~~gt~gy~aPE 736 (818)
|+|||+++ ++||+|||+|+........ ....+||+.|||||
T Consensus 459 p~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APE 506 (540)
T 3en9_A 459 TSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDE 506 (540)
T ss_dssp TTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHH
Confidence 89999999 9999999999987543211 24678999999999
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00015 Score=74.59 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=20.2
Q ss_pred ccccccCCCCcccccccccceec
Q 003465 694 FNNILLNSEFEAFFGNFGVARLL 716 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~ 716 (818)
|+|||++ ++.+||+|||+|+..
T Consensus 221 p~NILl~-~~~vkl~DFG~a~~~ 242 (282)
T 1zar_A 221 QYNVLVS-EEGIWIIDFPQSVEV 242 (282)
T ss_dssp TTSEEEE-TTEEEECCCTTCEET
T ss_pred HHHEEEE-CCcEEEEECCCCeEC
Confidence 8999999 999999999999743
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00013 Score=69.53 Aligned_cols=85 Identities=11% Similarity=0.136 Sum_probs=40.2
Q ss_pred cCCCcCceecccCc-ccccC----CCCCCCCCCCCcEEECcCCCCCCC----CccccCCCCCCCEEEccCCCCCCC----
Q 003465 122 GALSKLQILDLSHN-NLTGT----IPSKLGNLNNLVELYLSRSNLNGP----IPSTLGHLTRLSILDLSSNSLVGP---- 188 (818)
Q Consensus 122 ~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~---- 188 (818)
.+-+.|+.|+|++| .+... +-+.+..-+.|++|+|++|.+.+. +.+.+...+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455555666553 44321 223334445555666665555421 223333445566666666655432
Q ss_pred CccCCCCCCCCcEEEccc
Q 003465 189 IPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 189 ~~~~l~~l~~L~~L~L~~ 206 (818)
+...+...+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 222344444555555554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00025 Score=67.64 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=9.4
Q ss_pred ccCCCCCCEEECcCCcC
Q 003465 433 IRNLSYLHELDLSLNFI 449 (818)
Q Consensus 433 l~~l~~L~~L~Ls~N~l 449 (818)
+..-+.|+.|+++.|.+
T Consensus 153 L~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 153 IEENESLLRVGISFASM 169 (197)
T ss_dssp HHHCSSCCEEECCCCCH
T ss_pred HHhCCCcCeEeccCCCc
Confidence 34445666666665543
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0033 Score=63.52 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.5
Q ss_pred ccccccCCCCcccccccccceec
Q 003465 694 FNNILLNSEFEAFFGNFGVARLL 716 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~ 716 (818)
|+|||+++ .+||+|||+|+..
T Consensus 199 p~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 199 EYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp TTSEEESS--SEEECCCTTCEET
T ss_pred HHHEEEcC--cEEEEECcccccC
Confidence 89999998 9999999999865
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.017 Score=51.08 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=15.4
Q ss_pred CcEEECcCCCCCCCCccccCCCCCCCEEEccCCC
Q 003465 151 LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNS 184 (818)
Q Consensus 151 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 184 (818)
|++|+|++|+|+...+..|..+++|++|+|++|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444444443333334444444444444443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.029 Score=49.61 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=12.5
Q ss_pred CcEEEcccCcCCccCCccccCCCCCCEEEccCC
Q 003465 199 LTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231 (818)
Q Consensus 199 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 231 (818)
|++|+|++|+|+...+..|..+++|++|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 333344433333333333333333444444333
|
| >2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.17 Score=34.40 Aligned_cols=7 Identities=29% Similarity=0.690 Sum_probs=2.6
Q ss_pred HHHHhhh
Q 003465 604 LFLLRRK 610 (818)
Q Consensus 604 ~~~~~~~ 610 (818)
+++.|||
T Consensus 32 ~~~~RRr 38 (44)
T 2ks1_B 32 GLFMRRR 38 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3333333
|
| >2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.25 Score=33.50 Aligned_cols=7 Identities=14% Similarity=-0.339 Sum_probs=2.8
Q ss_pred hhHHHHH
Q 003465 586 ISIIFPI 592 (818)
Q Consensus 586 i~i~~~~ 592 (818)
|+.++++
T Consensus 12 IA~gVVg 18 (44)
T 2l2t_A 12 IAAGVIG 18 (44)
T ss_dssp HHHHHHH
T ss_pred EEEeehH
Confidence 3333343
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=87.50 E-value=0.2 Score=53.12 Aligned_cols=20 Identities=10% Similarity=-0.075 Sum_probs=17.5
Q ss_pred CcEEEEEcCCCcEEEEEecc
Q 003465 658 LDVTAAFTKHGCLVAEYGSE 677 (818)
Q Consensus 658 g~vy~~~~~~g~~vAvK~~~ 677 (818)
|.||+|..++|+.||||..+
T Consensus 109 a~VY~a~d~~G~~vAvKi~r 128 (397)
T 4gyi_A 109 SDIMIVADEKGKQKVLKIHR 128 (397)
T ss_dssp EEEEEEECTTCCEEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEEEe
Confidence 78999998889999999643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 818 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-28 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-25 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-22 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-20 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-27 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-24 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-19 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 8e-19 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 9e-22 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-16 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-16 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-15 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-15 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-04 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-19 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-19 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-17 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-16 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-13 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-11 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-13 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-11 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-10 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-09 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-09 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-08 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 8e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 9e-09 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 2e-08 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 3e-08 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 5e-07 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 6e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 1e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 4e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-04 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 3e-08 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 1e-05 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 2e-05 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 4e-05 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 1e-04 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 4e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.004 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 1e-07 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 1e-06 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-05 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 2e-07 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 2e-06 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 5e-06 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.002 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 6e-07 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 1e-06 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 7e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.001 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.002 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-06 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 4e-04 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 2e-06 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 2e-05 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 3e-05 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 3e-05 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 3e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 5e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 9e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 1e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 2e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 7e-05 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 7e-05 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 8e-05 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 9e-05 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 3e-04 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 3e-04 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 3e-04 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 3e-04 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 4e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 5e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.001 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.004 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 0.001 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 0.001 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 0.002 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 0.002 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 0.004 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 116 bits (290), Expect = 2e-28
Identities = 97/359 (27%), Positives = 157/359 (43%), Gaps = 33/359 (9%)
Query: 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNL 161
+ + + I +I + L+ L ++ S+N LT P L NL LV++ ++ + +
Sbjct: 45 QVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100
Query: 162 NGPIPSTLGHLTRLSILDLSSNSLVGPIPF------------TLGHLTQLTTLKLFSNQI 209
P L + + + P+ T+ ++ L+ L
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160
Query: 210 NGCIPLDFGNLRHLKEVDLSGNKLNGPIASTI-GDLTNLNSLDLSSKQLSGPLPQEIGYL 268
G D L +L ++ N ++ LTNL SL ++ Q+S P I
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT- 219
Query: 269 ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQ 328
NL LSLN N L TL LT+L+DLDL++N + P LS LT+LT LKL +NQ
Sbjct: 220 -NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274
Query: 329 INGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHL 388
I+ PL L L ++++ N+ I +L NL YL L N +S P L
Sbjct: 275 ISNISPLA--GLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISP--VSSL 328
Query: 389 TLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLN 447
T L+ L +NK++ S L N ++ L +N ++ P + NL+ + +L L+
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 105 bits (262), Expect = 6e-25
Identities = 86/371 (23%), Positives = 150/371 (40%), Gaps = 49/371 (13%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
AL++ L N+T T+ +L+ + L R + + +L L+ ++ S+
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIA---- 238
N L P +LT+L + + +NQI PL + + P+
Sbjct: 76 NQLTDITPL--KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 239 --------STIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSL-NVNNLTGPIPSTL 289
+TI D++ L+ L + G ++ L NL L ++++ S L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 290 GRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMS 349
+LT+L L ++N + P LT L L L NQ+ + +L NL +D++
Sbjct: 194 AKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249
Query: 350 SNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIP--------------------STFGHLT 389
+N++ PL LT L L L NQ+S P S +L
Sbjct: 250 NNQISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307
Query: 390 LLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFI 449
L +L L N ++ P + + LQ L +NN ++ S + NL+ ++ L N I
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363
Query: 450 SGMTPPQHFKQ 460
S +TP + +
Sbjct: 364 SDLTPLANLTR 374
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 97.0 bits (240), Expect = 4e-22
Identities = 88/407 (21%), Positives = 153/407 (37%), Gaps = 57/407 (14%)
Query: 147 NLNNLVELYLSRSNLNGPIP-STLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205
L ++ L ++N+ + + L +T L L S+ G + +L LT +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74
Query: 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQ-- 263
+NQ+ P NL L ++ ++ N++ +L + PL
Sbjct: 75 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132
Query: 264 ----------EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDL-SHNSLFGPIPPT 312
I + L L+ G + L L +L+ L+ +S
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDL 372
L+ LT L +L +NQI+ PLGI NL+ + ++ N+L+ T+ LTNL LDL
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIG--TLASLTNLTDLDL 248
Query: 373 SLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSE 432
+ NQ+S P LT L L L +N+++ P + + L + S
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL----EDISP 302
Query: 433 IRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSK 492
I NL L L L N IS ++P + L + N++S
Sbjct: 303 ISNLKNLTYLTLYFNNISDISPVSSLTK--------LQRLFFANNKVSD----------- 343
Query: 493 LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYN 539
S + N + + ++ +N + PL + + L L+
Sbjct: 344 -----VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 92.0 bits (227), Expect = 2e-20
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 93 DQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLV 152
D NL+ + + + + +L+ L LDL++N ++ P L L L
Sbjct: 211 DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 266
Query: 153 ELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGC 212
EL L + ++ P L LT L+ L+L+ N L P + +L LT L L+ N I+
Sbjct: 267 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDI 322
Query: 213 IPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLV 272
P +L L+ + + NK++ S++ +LTN+N L Q+S P + L +
Sbjct: 323 SP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 376
Query: 273 YLSLNVN 279
L LN
Sbjct: 377 QLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 78.5 bits (192), Expect = 5e-16
Identities = 61/361 (16%), Positives = 116/361 (32%), Gaps = 45/361 (12%)
Query: 219 NLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNV 278
L + L + + + DL + +L + + YL NL ++ +
Sbjct: 20 ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75
Query: 279 NNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLG-- 336
N LT P L LT L D+ +++N + P TL +
Sbjct: 76 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 337 ----------IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLS-GPIPSTF 385
I ++ L + G + L NL L+ + S
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 386 GHLTLLKFLNLNSNKLNGSIP--------------------SELMNCFSLQSLILSNNSL 425
LT L+ L +N+++ P L + +L L L+NN +
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 253
Query: 426 TGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPM 485
+ P + L+ L EL L N IS ++P ++ + +
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311
Query: 486 TIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTV 545
+ +S P + + + L + +NN + + + + + +L +N I
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLT 367
Query: 546 P 546
P
Sbjct: 368 P 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 53.5 bits (127), Expect = 5e-08
Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 49 WWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRI 108
+ +++ + ++ ++L N I S L+
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF-NNISDIS---PVSSLTKLQRLFF 336
Query: 109 WYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLS 157
+ +S S + L+ + L HN ++ P L NL + +L L+
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 40.8 bits (94), Expect = 6e-04
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 356 PIPLTIGD--LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF 413
PI D L + L ++ + T L + L + + SI +
Sbjct: 11 PINQIFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG-VEYLN 66
Query: 414 SLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKH 462
+L + SNN LT P ++NL+ L ++ ++ N I+ +TP +
Sbjct: 67 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLT 113
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 111 bits (278), Expect = 1e-27
Identities = 58/288 (20%), Positives = 114/288 (39%), Gaps = 15/288 (5%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P ++ +LDL +N +T NL NL L L + ++ P L +L
Sbjct: 25 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
L LS N L L +L + ++ + + N + E+ + K +G
Sbjct: 83 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGI 141
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
+ L+ + ++ ++ G +L L L+ N +T ++L L +L+
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLA 198
Query: 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG- 355
L LS NS+ +L++ L L L +N++ +P G+ + + ++ V + +N +
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257
Query: 356 -----PIPLTIGDLTNLIYLDLSLNQLS--GPIPSTFGHLTLLKFLNL 396
P + + L N + PSTF + + + L
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 101 bits (252), Expect = 4e-24
Identities = 49/260 (18%), Positives = 97/260 (37%), Gaps = 5/260 (1%)
Query: 221 RHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN 280
+DL NK+ +L NL++L L + ++S P L L L L+ N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 281 LTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL 340
L L L + + + L+ + + L + +G +
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGM 149
Query: 341 ENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNK 400
+ L + ++ + + G +L L L N+++ ++ L L L L+ N
Sbjct: 150 KKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206
Query: 401 LNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQ 460
++ L N L+ L L+NN L ++P + + Y+ + L N IS +
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265
Query: 461 KHSIRDRLLTYVNHQFNRLS 480
++ + + V+ N +
Sbjct: 266 GYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 88.6 bits (218), Expect = 1e-19
Identities = 57/303 (18%), Positives = 104/303 (34%), Gaps = 47/303 (15%)
Query: 63 HCKWAGIVC----------NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSN 112
C + C +L + L N I + +F NL + + +
Sbjct: 9 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQN-NKITE-IKDGDFKNLKNLHTLILINNK 66
Query: 113 ISGNIPSEIGALSKLQILDLSHNNLTGTIPS------KLGNLNN---------------- 150
IS P L KL+ L LS N L +L N
Sbjct: 67 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126
Query: 151 -LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI 209
+VEL + +G + +LS + ++ ++ G LT L L N+I
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI---TTIPQGLPPSLTELHLDGNKI 183
Query: 210 NGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLE 269
L +L ++ LS N ++ ++ + +L L L++ +L P + +
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHK 242
Query: 270 NLVYLSLNVNNLTG------PIPSTLGRLTSLSDLDLSHNSL-FGPIPP-TLSHLTRLTT 321
+ + L+ NN++ P + S S + L N + + I P T +
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302
Query: 322 LKL 324
++L
Sbjct: 303 VQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 85.9 bits (211), Expect = 8e-19
Identities = 57/286 (19%), Positives = 96/286 (33%), Gaps = 55/286 (19%)
Query: 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLE 344
+P L + LDL +N + +L L TL L +N+I+ P L LE
Sbjct: 25 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82
Query: 345 RVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQL-----------------------SGPI 381
R+ +S N+L+ L L + + ++ SG
Sbjct: 83 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142
Query: 382 PSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHE 441
F + L ++ + + +IP L SL L L N +T + ++ L+ L +
Sbjct: 143 NGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAK 199
Query: 442 LDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEI 501
L LS N IS + H L ++ N+L P +
Sbjct: 200 LGLSFNSISAVDNGSLANTPH------LRELHLNNNKLVKV---------------PGGL 238
Query: 502 GNCSGLLNVTLSNNSLDG------TIPLEMGKIIFLEYLDLSYNNI 541
+ + V L NN++ P K + L N +
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.2 bits (186), Expect = 1e-15
Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 17/235 (7%)
Query: 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401
+L V S LE +P + + LDL N+++ F +L L L L +NK+
Sbjct: 11 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67
Query: 402 NGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQK 461
+ P L+ L LS N L + L L + + +
Sbjct: 68 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV-------RKSVF 120
Query: 462 HSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSE-------IGNCSGLLNVTLSN 514
+ + ++ + + SG G+ KLS ++ G L + L
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 180
Query: 515 NSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMINFSISPTP 569
N + + + L L LS+N+I + + + N + P
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.3 bits (155), Expect = 1e-11
Identities = 49/216 (22%), Positives = 79/216 (36%), Gaps = 12/216 (5%)
Query: 45 LNTGWWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLE 104
L +E + ++ K V N +I + L ++ F L
Sbjct: 94 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153
Query: 105 SFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGP 164
RI +NI+ IP G L L L N +T + L LNNL +L LS ++++
Sbjct: 154 YIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210
Query: 165 IPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQING------CIPLDFG 218
+L + L L L++N LV +P L + + L +N I+ C P
Sbjct: 211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269
Query: 219 NLRHLKEVDLSGNKLN--GPIASTIGDLTNLNSLDL 252
V L N + ST + ++ L
Sbjct: 270 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.1 bits (232), Expect = 9e-22
Identities = 63/280 (22%), Positives = 97/280 (34%), Gaps = 8/280 (2%)
Query: 149 NNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ 208
V + L +P + ++ + L N + + LT L L SN
Sbjct: 11 EPKVTTSCPQQGLQA-VPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNV 67
Query: 209 INGCIPLDFGNLRHLKEVDLSGNKLNGPIAS-TIGDLTNLNSLDLSSKQLSGPLPQEIGY 267
+ F L L+++DLS N + T L L++L L L P
Sbjct: 68 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Query: 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327
L L YL L N L T L +L+ L L N + L L L L N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 328 QINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGH 387
++ P +L L + + +N L + L L YL L+ N +
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PL 246
Query: 388 LTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTG 427
L+ +S+++ S+P L L+ N L G
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.1 bits (193), Expect = 1e-16
Identities = 54/282 (19%), Positives = 86/282 (30%), Gaps = 25/282 (8%)
Query: 267 YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFS 326
Y E V S L +P + + + L N + + LT L L S
Sbjct: 9 YNEPKVTTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65
Query: 327 NQINGSIPLGIGNLENLERVDMSSNKLEGPI-PLTIGDLTNLIYLDLSLNQLSGPIPSTF 385
N + L LE++D+S N + P T L L L L L P F
Sbjct: 66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125
Query: 386 GHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLS 445
L L++L L N L + +L L L N ++ R L L L L
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Query: 446 LNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCS 505
N ++ + P + L +
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALP--------------------TEALAPLR 225
Query: 506 GLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547
L + L++N +L+ S + +P ++P+
Sbjct: 226 ALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.9 bits (190), Expect = 3e-16
Identities = 59/269 (21%), Positives = 89/269 (33%), Gaps = 11/269 (4%)
Query: 224 KEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG 283
L + I + L ++S NL L L+ N L
Sbjct: 14 VTTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70
Query: 284 PIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSNQINGSIPLGIGNLEN 342
+ L L LDLS N+ + P T L RL TL L + P L
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Query: 343 LERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN 402
L+ + + N L+ T DL NL +L L N++S F L L L L+ N++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 403 GSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKH 462
P + L +L L N+L+ + L L L L+ N +
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW- 249
Query: 463 SIRDRLLTYVNHQFNRLSGQIPMTIGGLS 491
L + + +P + G
Sbjct: 250 ------LQKFRGSSSEVPCSLPQRLAGRD 272
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.6 bits (184), Expect = 2e-15
Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 4/194 (2%)
Query: 90 GKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLN 149
+D F L + + + P L+ LQ L L N L +L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI 209
NL L+L + ++ L L L L N + P L +L TL LF+N +
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 210 NGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLE 269
+ LR L+ + L+ N + L SS ++ LPQ L
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR---LA 269
Query: 270 NLVYLSLNVNNLTG 283
L N+L G
Sbjct: 270 GRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.5 bits (181), Expect = 3e-15
Identities = 61/247 (24%), Positives = 91/247 (36%), Gaps = 4/247 (1%)
Query: 72 NLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILD 131
+ + RI L G N I + +F NL + + ++ + L+ L+ LD
Sbjct: 29 GIPAASQRIFLHG-NRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86
Query: 132 LSHNNLTGTI-PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP 190
LS N ++ P+ L L L+L R L P L L L L N+L
Sbjct: 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146
Query: 191 FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSL 250
T L LT L L N+I+ F L L + L N++ DL L +L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 251 DLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIP 310
L + LS + + L L YL LN N + L S + + +P
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP 265
Query: 311 PTLSHLT 317
L+
Sbjct: 266 QRLAGRD 272
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 18/167 (10%)
Query: 394 LNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT 453
+ L ++P + + Q + L N ++ + R +L++ ++
Sbjct: 16 TSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACR-----NLTILWLHSNV 67
Query: 454 PPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLS----------GSVPSEIGN 503
+ + L +L P T GL +L P
Sbjct: 68 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Query: 504 CSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFIN 550
+ L + L +N+L + L +L L N I
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 89.0 bits (219), Expect = 7e-20
Identities = 73/279 (26%), Positives = 113/279 (40%), Gaps = 5/279 (1%)
Query: 131 DLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNG--PIPSTLGHLTRLSILDLSSN-SLVG 187
D + G + + L LS NL PIPS+L +L L+ L + +LVG
Sbjct: 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91
Query: 188 PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNL 247
PIP + LTQL L + ++G IP ++ L +D S N L+G + +I L NL
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 248 NSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG 307
+ ++SG +P G L N +L+ +DLS N
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM-LE 210
Query: 308 PIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNL 367
L + T + +G +NL +D+ +N++ G +P + L L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 368 IYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP 406
L++S N L G IP G+L +NK P
Sbjct: 271 HSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 88.3 bits (217), Expect = 1e-19
Identities = 79/362 (21%), Positives = 132/362 (36%), Gaps = 75/362 (20%)
Query: 40 EREALL----------NTGWWNNSREKASNHSDHC--KWAGIVCNLNGSIIRISLSGVNG 87
+++ALL W + +D C W G++C+ + R++
Sbjct: 7 DKQALLQIKKDLGNPTTLSSWLPT-------TDCCNRTWLGVLCDTDTQTYRVN------ 53
Query: 88 IRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTG--TIPSKL 145
LDLS NL IPS L
Sbjct: 54 -----------------------------------------NLDLSGLNLPKPYPIPSSL 72
Query: 146 GNLNNLVELYLSRS-NLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204
NL L LY+ NL GPIP + LT+L L ++ ++ G IP L + L TL
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNS-LDLSSKQLSGPLPQ 263
N ++G +P +L +L + GN+++G I + G + L + + +S +L+G +P
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLK 323
L + + + L L
Sbjct: 193 TFANLNLAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250
Query: 324 LFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQL--SGPI 381
L +N+I G++P G+ L+ L +++S N L G IP G+L + N+ P+
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309
Query: 382 PS 383
P+
Sbjct: 310 PA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 88.3 bits (217), Expect = 1e-19
Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 5/267 (1%)
Query: 167 STLGHLTRLSILDLSSNSLVG--PIPFTLGHLTQLTTLKLFSN-QINGCIPLDFGNLRHL 223
T R++ LDLS +L PIP +L +L L L + + G IP L L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 224 KEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG 283
+ ++ ++G I + + L +LD S LSG LP I L NLV ++ + N ++G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 284 PIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENL 343
IP + G + L + P + S + + +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 344 ERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG 403
+ + +G NL LDL N++ G +P L L LN++ N L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 404 SIPSELMNCFSLQSLILSNNSLTGRIP 430
IP + N +NN P
Sbjct: 283 EIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 81.0 bits (198), Expect = 4e-17
Identities = 73/256 (28%), Positives = 110/256 (42%), Gaps = 27/256 (10%)
Query: 218 GNLRHLKEVDLSGNKLNG--PIASTIGDLTNLNSLDLSS-KQLSGPLPQEIGYLENLVYL 274
+ +DLSG L PI S++ +L LN L + L GP+P I L L YL
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 275 SLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIP 334
+ N++G IP L ++ +L LD S+N+L G +PP++S L L + N+I+G+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 335 LGIGNLENLER-VDMSSNKLEGPIPLTIGDLTNLIYLDLS-------------------- 373
G+ L + +S N+L G IP T +L
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 374 --LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPS 431
G L L+L +N++ G++P L L SL +S N+L G IP
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285
Query: 432 EIRNLSYLHELDLSLN 447
+ NL + N
Sbjct: 286 QGGNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 78.6 bits (192), Expect = 2e-16
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 6/243 (2%)
Query: 314 SHLTRLTTLKLFSNQING--SIPLGIGNLENLERVDMSSN-KLEGPIPLTIGDLTNLIYL 370
+ R+ L L + IP + NL L + + L GPIP I LT L YL
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 371 DLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIP 430
++ +SG IP + L L+ + N L+G++P + + +L + N ++G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 431 SEIRNLSYLHELDLSLN---FISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTI 487
+ S L + R + + S + I
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 488 GGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547
++G L + L NN + GT+P + ++ FL L++S+NN+ G +P+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 548 FIN 550
N
Sbjct: 287 GGN 289
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.6 bits (166), Expect = 4e-13
Identities = 49/270 (18%), Positives = 100/270 (37%), Gaps = 16/270 (5%)
Query: 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL-V 186
Q LDL+ NL + +L + ++ RS ++ P+ R+ +DLS++ + V
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60
Query: 187 GPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLS--GNKLNGPIASTIGDL 244
+ L ++L L L +++ I +L ++LS + + +
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 245 TNLNSLDL------SSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL 298
+ L+ L+L + K + + + L N + + + R +L L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 299 DLSHNSLFGP-IPPTLSHLTRLTTLKL-FSNQINGSIPLGIGNLENLERVDMSSNKLEGP 356
DLS + + L L L L I L +G + L+ + + +G
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 357 IPLTIGDLTNLIYLDLSLNQLSGPIPSTFG 386
+ L L + L ++ + + T G
Sbjct: 241 LQLLKEALPH---LQINCSHFTTIARPTIG 267
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (148), Expect = 7e-11
Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 15/254 (5%)
Query: 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTG-TIPSKLGNLNNLVELYLSRSN 160
+ +FR S + + E + ++Q +DLS++ + T+ L + L L L
Sbjct: 24 GVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 161 LNGPIPSTLGHLTRLSILDLSSNSLVGPIP-----FTLGHLTQLTTLKLFSNQINGCIPL 215
L+ PI +TL + L L+LS S + L +L F
Sbjct: 83 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142
Query: 216 DFGNLRHLKEVDLSGNKLN----GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENL 271
+ +++LSG + N ++ S L QE L L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202
Query: 272 VYLSL-NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330
+LSL ++ LG + +L L + G + L L++ +
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFT 259
Query: 331 GSIPLGIGNLENLE 344
IGN +N E
Sbjct: 260 TIARPTIGNKKNQE 273
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 37/257 (14%), Positives = 85/257 (33%), Gaps = 15/257 (5%)
Query: 298 LDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG-P 356
LDL+ +L + L + + + ++ + ++ +D+S++ +E
Sbjct: 5 LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVST 62
Query: 357 IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416
+ + + L L L +LS PI +T + L LNL+ + + +
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQF 476
L+ + ++ ++ +SG ++ R V+
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 477 NRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSN-NSLDGTIPLEMGKIIFLEYLD 535
+ E + L +++LS + LE+G+I L+ L
Sbjct: 183 SDSVML-----------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231
Query: 536 LSYNNIPGTVPEFINRI 552
+ GT+ +
Sbjct: 232 VFGIVPDGTLQLLKEAL 248
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 45/279 (16%), Positives = 88/279 (31%), Gaps = 20/279 (7%)
Query: 274 LSLNVNNLTGPIPSTLGRLTSLS--DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQING 331
L L NL P GRL S + + P+ S R+ + L ++ I
Sbjct: 5 LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60
Query: 332 -SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL 390
++ + L+ + + +L PI T+ +NL+ L+LS +
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 391 LKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450
+ LN + + + S ++ +L+G + ++ L L +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS--DLSTLVRRCPNLV 178
Query: 451 GMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNV 510
+ K+ Q LS + E+G L +
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLS--------RCYDIIPETLLELGEIPTLKTL 230
Query: 511 TLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI 549
+ DGT+ L L +L ++ ++ I
Sbjct: 231 QVFGIVPDGTLQLLKEA---LPHLQINCSHFTTIARPTI 266
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.8 bits (164), Expect = 5e-13
Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 25/207 (12%)
Query: 240 TIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLD 299
+ + + ++ + L+ LP ++ ++ L L+ N L +TL T L+ L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 300 LSHNSLFG-PIPPTLSHLTRLTTLKLFS--------------------NQINGSIPLGIG 338
L L + TL L L N++ +
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 339 NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNS 398
L L+ + + N+L+ P + L L L+ N L+ L L L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 399 NKLNGSIPSELMNCFSLQSLILSNNSL 425
N L +IP L L N
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (153), Expect = 1e-11
Identities = 50/189 (26%), Positives = 68/189 (35%), Gaps = 6/189 (3%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P ++ IL LS N L + L L +L L R+ L L L
Sbjct: 25 LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLG 80
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGP 236
LDLS N L L LT L + N++ L L+E+ L GN+L
Sbjct: 81 TLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 237 IASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296
+ L L L++ L+ + LENL L L N+L IP L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198
Query: 297 DLDLSHNSL 305
L N
Sbjct: 199 FAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.9 bits (146), Expect = 1e-10
Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 5/204 (2%)
Query: 337 IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNL 396
+ + + V+ L +P + + L LS N L +T T L LNL
Sbjct: 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 397 NSNKLNGSI-PSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPP 455
+ +L L +L SL + + + G
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 456 QHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNN 515
Q+ ++ L + + ++ + L+ + L + L N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 516 SLDGTIPLEMGKIIFLEYLDLSYN 539
S TIP L + L N
Sbjct: 183 S-LYTIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (142), Expect = 4e-10
Identities = 50/207 (24%), Positives = 73/207 (35%), Gaps = 29/207 (14%)
Query: 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLK 323
E+ + + + ++ + NLT +P L + L LS N L+ TL TRLT L
Sbjct: 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 324 LFSNQINGSIPLGIGNLENLERVDMSSN-----------------------KLEGPIPLT 360
L ++ G L L +D+S N +L
Sbjct: 62 LDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 361 IGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLIL 420
+ L L L L N+L P L+ L+L +N L L +L +L+L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 421 SNNSLTGRIPSEIRNLSYLHELDLSLN 447
NSL IP L L N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 2e-06
Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 9/211 (4%)
Query: 71 CNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQIL 130
+ S + ++ N L + + + + + + ++L L
Sbjct: 6 VSKVASHLEVNCDKRN-----LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 131 DLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP 190
+L LT L L L LS + L L L++LD+S N L
Sbjct: 61 NLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPL 117
Query: 191 FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSL 250
L L +L L L N++ P L+++ L+ N L A + L NL++L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 251 DLSSKQLSGPLPQEIGYLENLVYLSLNVNNL 281
L L +P+ L + L+ N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 59.3 bits (142), Expect = 2e-10
Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 19/230 (8%)
Query: 147 NLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS 206
L N +++ +SN+ + T L ++ L + + +L L L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72
Query: 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIG 266
NQI PL E+ + K IA T + + +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 267 YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFS 326
L + N++ L G S + L++L++LTTLK
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYL----------SIGNAQVSDLTPLANLSKLTTLKADD 182
Query: 327 NQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQ 376
N+I+ PL +L NL V + +N++ PL + +NL + L+ NQ
Sbjct: 183 NKISDISPLA--SLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLT-NQ 227
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 57.0 bits (136), Expect = 1e-09
Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 23/220 (10%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
AL+ + +N+T T+ +L+ + L + + + +L L L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIG 242
N + P L + I + S +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 243 DLTNLNSLDLSSKQLSGPLPQE--------------IGYLENLVYLSLNVNNLTGPIPST 288
L + + L+G + + L L L + N ++ P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 289 LGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQ 328
L L +L ++ L +N + P L++ + L + L +NQ
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL-TNQ 227
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 56.6 bits (135), Expect = 2e-09
Identities = 36/226 (15%), Positives = 66/226 (29%), Gaps = 18/226 (7%)
Query: 172 LTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
L + +++ + T L +TTL F + + L +L ++L N
Sbjct: 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGV--QYLNNLIGLELKDN 73
Query: 232 KLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGR 291
++ L + + + + + + S L
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 292 LTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN 351
L + + + L G S + NL L + N
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADDN 183
Query: 352 KLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLN 397
K+ PL L NLI + L NQ+S P + + L + L
Sbjct: 184 KISDISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 54.3 bits (129), Expect = 1e-08
Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 24/228 (10%)
Query: 209 INGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYL 268
IN P L + ++ + + + T DL + +L ++ + + YL
Sbjct: 9 INVIFPDP--ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYL 62
Query: 269 ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQ 328
NL+ L L N +T P + +L + I S T T ++
Sbjct: 63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122
Query: 329 INGSIPLGIGNLENLERVDMSSNKLEGPI--------------PLTIGDLTNLIYLDLSL 374
+ + L + + L G + +L+ L L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182
Query: 375 NQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSN 422
N++S P L L ++L +N+++ P L N +L + L+N
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 49.6 bits (117), Expect = 3e-07
Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 20/207 (9%)
Query: 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327
L N + ++ +N+T + T L ++ L + + +L L L+L N
Sbjct: 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73
Query: 328 QINGSIPLGIGNLENLERVDMSSNKLEGPIPL--------------TIGDLTNLIYLDLS 373
QI PL + + K I T +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 374 LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433
L I + L L+ S + L N L +L +N ++ P +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191
Query: 434 RNLSYLHELDLSLNFISGMTPPQHFKQ 460
+L L E+ L N IS ++P +
Sbjct: 192 ASLPNLIEVHLKNNQISDVSPLANTSN 218
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 27/208 (12%), Positives = 56/208 (26%), Gaps = 12/208 (5%)
Query: 339 NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNS 398
L N ++ + + + DL + L ++ +L L L L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 399 NKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHF 458
N++ P + + + L + I + +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 459 KQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLD 518
+ + L+G + + S + + N S L + +N +
Sbjct: 133 VLYLDL------NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186
Query: 519 GTIPLEMGKIIFLEYLDLSYNNIPGTVP 546
PL + L + L N I P
Sbjct: 187 DISPL--ASLPNLIEVHLKNNQISDVSP 212
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 47.7 bits (112), Expect = 2e-06
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 92 LDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNL 151
D + L + + + IS P + +L L + L +N ++ P L N +NL
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219
Query: 152 VELYLS 157
+ L+
Sbjct: 220 FIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 42.7 bits (99), Expect = 8e-05
Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 14/222 (6%)
Query: 316 LTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLN 375
L + + + ++ +L+ + + + + L NLI L+L N
Sbjct: 18 LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73
Query: 376 QLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRN 435
Q++ P L+ N K +I + + S ++
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 436 LSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSG 495
L +++ ++G+T Q+ + L+ +T
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGN--------AQVSDLTPLANLSKLTTLKADDNKI 185
Query: 496 SVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLS 537
S S + + L+ V L NN + PL L + L+
Sbjct: 186 SDISPLASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLT 225
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 54.2 bits (129), Expect = 9e-09
Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 22/216 (10%)
Query: 117 IPSEIG------ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLG 170
+P+ I A ++ +L ++T + LN++ ++ + S++ +
Sbjct: 10 VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQ 65
Query: 171 HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSG 230
+L ++ L L+ N L P LK + + + S
Sbjct: 66 YLPNVTKLFLNGNKLTDIKPL--------ANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117
Query: 231 NKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLG 290
+ + I+ G + L + L L LSL N ++ +P L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LA 175
Query: 291 RLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFS 326
LT L +L LS N + L+ L L L+LFS
Sbjct: 176 GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 52.7 bits (125), Expect = 2e-08
Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 24/194 (12%)
Query: 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327
+ +L ++T + T L S+ + +++ + + +L +T L L N
Sbjct: 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78
Query: 328 QINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGH 387
++ P + NL+NL + + NK++ L + L+ + +
Sbjct: 79 KLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136
Query: 388 LTLLKFLNLNSNKLNGSI----------------PSELMNCFSLQSLILSNNSLTGRIPS 431
+L N ++ S L LQ+L LS N ++
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR 194
Query: 432 EIRNLSYLHELDLS 445
+ L L L+L
Sbjct: 195 ALAGLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 52.3 bits (124), Expect = 3e-08
Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 20/224 (8%)
Query: 179 DLSSNSLVGPIP----FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
L S ++ P P F+ + L + + + L + ++ + + +
Sbjct: 2 PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 59
Query: 235 GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTS 294
I L N+ L L+ +L+ L NL L + + +
Sbjct: 60 SVQG--IQYLPNVTKLFLNGNKLTDI-----KPLANLKNLGWLFLDENKVKDLSSLKDLK 112
Query: 295 LSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354
++ I + + + + + L L+ + + N++
Sbjct: 113 KLKSLSLEHNGISDINGLVHLPQLESL---YLGNNKITDITVLSRLTKLDTLSLEDNQIS 169
Query: 355 GPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNS 398
+PL LT L L LS N +S L L L L S
Sbjct: 170 DIVPL--AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 48.9 bits (115), Expect = 5e-07
Identities = 34/214 (15%), Positives = 67/214 (31%), Gaps = 18/214 (8%)
Query: 209 INGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYL 268
I D + +L + + T +L +++ + ++ + I YL
Sbjct: 14 IKQIFSDD--AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYL 67
Query: 269 ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQ 328
N+ L LN N LT P L +L +L + + +
Sbjct: 68 PNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122
Query: 329 INGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHL 388
I + + ++ + + + L L D ++ + L
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGL 177
Query: 389 TLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSN 422
T L+ L L+ N + S L +L L L +
Sbjct: 178 TKLQNLYLSKNHI--SDLRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 45.8 bits (107), Expect = 6e-06
Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 17/201 (8%)
Query: 356 PIPLTIGD------LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSEL 409
+P I I +L ++ + L + + N++ + +
Sbjct: 9 TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--I 64
Query: 410 MNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLL 469
++ L L+ N LT P + NL L L L N + ++ + K+ S+
Sbjct: 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE-- 120
Query: 470 TYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKII 529
N L + L + + + + L ++L +N + +PL +
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL--AGLT 178
Query: 530 FLEYLDLSYNNIPGTVPEFIN 550
L+ L LS N+I +
Sbjct: 179 KLQNLYLSKNHI-SDLRALAG 198
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 36/197 (18%), Positives = 63/197 (31%), Gaps = 51/197 (25%)
Query: 101 PNLESF-RIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRS 159
+ S L+ + + +++++ + L N+ +L+L+ +
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78
Query: 160 NLNGPIPSTLGHLTRLSILDLSSNSLVGP------------------------------- 188
L P L +L L L L N +
Sbjct: 79 KLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136
Query: 189 -----------IPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPI 237
L LT+L TL L NQI+ +P L L+ + LS N ++
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 193
Query: 238 ASTIGDLTNLNSLDLSS 254
+ L NL+ L+L S
Sbjct: 194 -RALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 31/184 (16%), Positives = 55/184 (29%), Gaps = 20/184 (10%)
Query: 292 LTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN 351
+L S+ + T + L + + ++ I GI L N+ ++ ++ N
Sbjct: 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGN 78
Query: 352 KLEGPIPLT---------------IGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNL 396
KL PL + L L S L L L
Sbjct: 79 KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138
Query: 397 NSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQ 456
N +++ + + ++ I + L+ L L LS N IS +
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRALA 197
Query: 457 HFKQ 460
K
Sbjct: 198 GLKN 201
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.003
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 92 LDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNL 151
D S L++ + + IS +P + L+KLQ L LS N+++ + + L L NL
Sbjct: 147 TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNL 202
Query: 152 VELYLS 157
L L
Sbjct: 203 DVLELF 208
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (132), Expect = 1e-08
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 246 NLNSLDLSSKQLS-GPLPQEIGYLENLVYLSLNVNNLTG----PIPSTLGRLTSLSDLDL 300
++ SLD+ ++LS + + L+ + L+ LT I S L +L++L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 301 SHNSLFGPIPPTLSHL-----TRLTTLKLFSNQ 328
N L + ++ L L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (126), Expect = 6e-08
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 10/107 (9%)
Query: 366 NLIYLDLSLNQLS-GPIPSTFGHLTLLKFLNLNSNKLNG----SIPSELMNCFSLQSLIL 420
++ LD+ +LS L + + L+ L I S L +L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 421 SNNSLTGRIPSEI-----RNLSYLHELDLSLNFISGMTPPQHFKQKH 462
+N L + + +L L ++G
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 109
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (124), Expect = 1e-07
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 342 NLERVDMSSNKL-EGPIPLTIGDLTNLIYLDLSLNQLSG----PIPSTFGHLTLLKFLNL 396
+++ +D+ +L + + L + L L+ I S L LNL
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 397 NSNKLNGSIPSELM-----NCFSLQSLILSNN 423
SN+L ++ +Q L L N
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (123), Expect = 1e-07
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 127 LQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRSNLNG----PIPSTLGHLTRLSILDLS 181
+Q LD+ L+ ++L L + L L I S L L+ L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 182 SNSLVGPIPFTLGHL-----TQLTTLKLFSNQINGC 212
SN L + ++ L L + + G
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (123), Expect = 2e-07
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 102 NLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTG----TIPSKLGNLNNLVELYL 156
+++S I +S +E+ L + Q++ L LT I S L L EL L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 157 SRSNLNGPIPSTLGHL-----TRLSILDLSSN 183
+ L + ++ L L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (117), Expect = 9e-07
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 175 LSILDLSSNSLV-GPIPFTLGHLTQLTTLKLFSNQING----CIPLDFGNLRHLKEVDLS 229
+ LD+ L L L Q ++L + I L E++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 230 GNKLNGPIASTIGDL-----TNLNSLDLSSKQ 256
N+L + + L L +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (115), Expect = 1e-06
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 365 TNLIYLDLSLNQLSG----PIPSTFGHLTLLKFLNLNSNKLNGSIPSELM-----NCFSL 415
+ L L L+ +S + +T L+ L+L++N L + +L+ L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 416 QSLILSNNSLTGRIPSEIRNL 436
+ L+L + + + ++ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (113), Expect = 3e-06
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 382 PSTFGHLTLLKFLNLNSNKLNG----SIPSELMNCFSLQSLILSNNSLTGRIPSEI---- 433
++L+ L L ++ S+ + L+ SL+ L LSNN L ++
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 434 -RNLSYLHELDLSLNFISGMTPPQ 456
+ L +L L + S +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR 445
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 10/90 (11%)
Query: 294 SLSDLDLSHNSL-FGPIPPTLSHLTRLTTLKLFSNQING----SIPLGIGNLENLERVDM 348
+ LD+ L L L + ++L + I + L +++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 349 SSNKLEGPIPLTIGDL-----TNLIYLDLS 373
SN+L + + L L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (111), Expect = 5e-06
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 10/92 (10%)
Query: 270 NLVYLSLNVNNLT-GPIPSTLGRLTSLSDLDLSHNSL----FGPIPPTLSHLTRLTTLKL 324
++ L + L+ L L + L L I L L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 325 FSNQINGSIPLGIG-----NLENLERVDMSSN 351
SN++ + ++++ + +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (108), Expect = 1e-05
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 199 LTTLKLFSNQIN-GCIPLDFGNLRHLKEVDLSGNKLNG----PIASTIGDLTNLNSLDLS 253
+ +L + +++ L+ + V L L I+S + L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 254 SKQLSGPLPQEIGYLENLVYLSLNVNNLTG 283
S +L + + +L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (105), Expect = 2e-05
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 197 TQLTTLKLFSNQING----CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGD-----LTNL 247
+ L L L ++ + L+E+DLS N L + + L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 248 NSLDLSSKQLSGPLPQEIGYLE----NLVYLS 275
L L S + + LE +L +S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (105), Expect = 3e-05
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 94 QFNFSCFPNLESFRIWYSNISGN----IPSEIGALSKLQILDLSHNNLTGTIPSKLG--- 146
Q L + ++S + + + + A L+ LDLS+N L +L
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 147 --NLNNLVELYLSRSNLNGPIPSTLGHL 172
L +L L + + L L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (101), Expect = 8e-05
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 270 NLVYLSLNVNNLTG----PIPSTLGRLTSLSDLDLSHNSLFGPIPPTLS-----HLTRLT 320
L L L +++ + +TL SL +LDLS+N L L L
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 321 TLKLFSNQINGSIPLGIGNLE 341
L L+ + + + LE
Sbjct: 430 QLVLYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 313 LSHLTRLTTLKLFSNQING----SIPLGIGNLENLERVDMSSNKLEGPIPLTIGD----- 363
+ L L L ++ S+ + +L +D+S+N L L + +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 364 LTNLIYLDLSLNQLSGPIPSTFGHL 388
L L L S + L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 7e-04
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 9/73 (12%)
Query: 97 FSCFPNLESFRIWYSNISG----NIPSEIGALSKLQILDLSHNNLTGTIPSKLG-----N 147
+ R+ ++ +I S + L L+L N L +
Sbjct: 23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82
Query: 148 LNNLVELYLSRSN 160
+ +L L
Sbjct: 83 SCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 8e-04
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 212 CIPLDFGNLRHLKEVDLSGNKLNG----PIASTIGDLTNLNSLDLSSKQLSGPLPQEIG- 266
L+ + L+ ++ +A+T+ +L LDLS+ L ++
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419
Query: 267 ----YLENLVYLSLNVNNLTGPIPSTLGRL 292
L L L + + L L
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 0.001
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 25/92 (27%)
Query: 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNS 184
S L++L L+ +++ + S L +TL L LDLS+N
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLA--------------------ATLLANHSLRELDLSNNC 408
Query: 185 LVGPIPFTLG-----HLTQLTTLKLFSNQING 211
L L L L L+ +
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 348 MSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPS 407
N I +L L++S N+L +P+ L+ L + N L +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-EVPE 321
Query: 408 ELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLH 440
N L+ L + N L P ++ L
Sbjct: 322 LPQN---LKQLHVEYNPLRE-FPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 9/151 (5%)
Query: 49 WWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRI 108
D + + + + + + + FS L
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267
Query: 109 WYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPST 168
+ + S I S L+ L++S+N L +P+ L L S ++L +P
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAE-VPEL 322
Query: 169 LGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199
+L + L + N L P + L
Sbjct: 323 PQNLKQ---LHVEYNPLRE-FPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 276 LNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335
+N + I S SL +L++S+N L +P L RL N + +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNHLA-EVPE 321
Query: 336 GIGNLENLERVDMSSNKLEGPIPLTIGDLTNL 367
NL+ L + N L P + +L
Sbjct: 322 LPQNLKQL---HVEYNPLRE-FPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.7 bits (109), Expect = 6e-06
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 204 LFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQ 263
+ N + I L+E+++S NKL L L S L+ +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLAE-VPE 321
Query: 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSL 295
NL L + N L P + L
Sbjct: 322 LPQ---NLKQLHVEYNPLRE-FPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 57/308 (18%), Positives = 97/308 (31%), Gaps = 19/308 (6%)
Query: 245 TNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNS 304
+ L+L++ LS LP+ +L L + N+LT +P L SL + +N+
Sbjct: 38 RQAHELELNNLGLSS-LPELPP---HLESLVASCNSLT-ELPELPQSLKSL---LVDNNN 89
Query: 305 LFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364
L LS L L SN +P + N L+ +D+ +N L+ L
Sbjct: 90 LKA-----LSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143
Query: 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNS 424
+ + L S+ S + L+ L N
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203
Query: 425 LTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP 484
NL + + V+ ++P
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263
Query: 485 MTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGT 544
+ L+ S + S L + +SNN L +P + LE L S+N++
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AE 318
Query: 545 VPEFINRI 552
VPE +
Sbjct: 319 VPELPQNL 326
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 3e-04
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 15/99 (15%)
Query: 395 NLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454
N + I S SL+ L +SNN L +P+ L L S N ++ +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEV-- 319
Query: 455 PQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKL 493
P+ + L ++ ++N L + P + L
Sbjct: 320 PELPQN--------LKQLHVEYNPLR-EFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.2 bits (92), Expect = 9e-04
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNS 184
+ L+L++ L+ ++P +L L S ++L +P L L + + + +
Sbjct: 38 RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92
Query: 185 L 185
L
Sbjct: 93 L 93
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 52.4 bits (124), Expect = 3e-08
Identities = 45/200 (22%), Positives = 74/200 (37%), Gaps = 16/200 (8%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
AL++ L N+T T+ +L+ + L R + + +L L+ ++ S+
Sbjct: 16 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 71
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIG 242
N L P + T + N I L+ +
Sbjct: 72 NQLTDITPL------KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 125
Query: 243 DLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSH 302
+LTNLN L+LSS +S + + N +T P L LT+L LD+S
Sbjct: 126 NLTNLNRLELSSNTISDISALSGLTSLQQLNF--SSNQVTDLKP--LANLTTLERLDISS 181
Query: 303 NSLFGPIPPTLSHLTRLTTL 322
N + L+ LT L +L
Sbjct: 182 NKVSD--ISVLAKLTNLESL 199
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 26/204 (12%)
Query: 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIG 266
IN L + L + + + DL + +L + +
Sbjct: 6 TPINQIFTDT--ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVE 59
Query: 267 YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFS 326
YL NL ++ + N LT P ++ + + P+ + +
Sbjct: 60 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 119
Query: 327 NQINGSIPLGIGNLEN----------------LERVDMSSNKLEGPIPLTIGDLTNLIYL 370
+ + LE L++++ SSN++ PL +LT L L
Sbjct: 120 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERL 177
Query: 371 DLSLNQLSGPIPSTFGHLTLLKFL 394
D+S N++S S LT L+ L
Sbjct: 178 DISSNKVSD--ISVLAKLTNLESL 199
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 20/189 (10%)
Query: 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327
L + L N+T + + L ++ L + + +L LT + +N
Sbjct: 17 LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 72
Query: 328 QINGSIPLG--------------IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLS 373
Q+ PL I ++ L + + +T D +
Sbjct: 73 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132
Query: 374 LNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433
L S I L LN + + L N +L+ L +S+N ++ S +
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVL 190
Query: 434 RNLSYLHEL 442
L+ L L
Sbjct: 191 AKLTNLESL 199
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 43.1 bits (100), Expect = 4e-05
Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 22/185 (11%)
Query: 292 LTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN 351
L L ++ + + + L ++TTL+ I SI G+ L NL +++ S+N
Sbjct: 17 LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN 72
Query: 352 KLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMN 411
+L PL I ++ + P+ + L F N ++ + L
Sbjct: 73 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132
Query: 412 CFSLQSLIL----------------SNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPP 455
+ I S+N +T P + NL+ L LD+S N +S ++
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVL 190
Query: 456 QHFKQ 460
Sbjct: 191 AKLTN 195
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 46/199 (23%), Positives = 67/199 (33%), Gaps = 16/199 (8%)
Query: 172 LTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
L L ++ + + L Q+TTL+ I + L +L +++ S N
Sbjct: 17 LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDGV--EYLNNLTQINFSNN 72
Query: 232 KLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGR 291
+L L +L L + + I
Sbjct: 73 QLTDIT--------PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124
Query: 292 LTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN 351
+ L +S LS LT L L SNQ+ PL NL LER+D+SSN
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSN 182
Query: 352 KLEGPIPLTIGDLTNLIYL 370
K+ L LTNL L
Sbjct: 183 KVSDISVL--AKLTNLESL 199
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.0 bits (127), Expect = 4e-08
Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 27/136 (19%)
Query: 695 NNILLNSEFEAFFGNFGVARLLNSDSSNRTL--IAGTYRYIAPAKHPQEILSLFSSTSD- 751
NNI L+ + G+FG+A + + S + ++G+ ++AP + + +S SD
Sbjct: 133 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDV 192
Query: 752 ---------------------PHITLTYILDQRISPPKKQKIVQDI--ALASIVALACLQ 788
+ +++ + P K+ + A+ ++ CL+
Sbjct: 193 YAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLM-AECLK 251
Query: 789 SKPKSVPTMQRVSQEF 804
K P ++
Sbjct: 252 KKRDERPLFPQILASI 267
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.1 bits (119), Expect = 5e-08
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 273 YLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGS 332
L L +LT + L +L ++ LDLSHN L PP L+ L L L+ N +
Sbjct: 2 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALE-- 56
Query: 333 IPLGIGNLENLERVDMSSNKLEG-PIPLTIGDLTNLIYLDLSLNQLSG 379
G+ NL L+ + + +N+L+ + L+ L+L N L
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.7 bits (118), Expect = 7e-08
Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 34/155 (21%)
Query: 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG 187
++L L+H +LT + L L ++ LDLS N L
Sbjct: 1 RVLHLAHKDLT--------------------------VLCHLEQLLLVTHLDLSHNRLRA 34
Query: 188 PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG-PIASTIGDLTN 246
P L L L L+ N + NL L+E+ L N+L +
Sbjct: 35 LPP-ALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 91
Query: 247 LNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNL 281
L L+L L E G E L + +V+++
Sbjct: 92 LVLLNLQGNSLCQ----EEGIQERLAEMLPSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.4 bits (112), Expect = 4e-07
Identities = 24/127 (18%), Positives = 36/127 (28%), Gaps = 10/127 (7%)
Query: 201 TLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260
L L + + L + +DLS N+L + L L L S L
Sbjct: 2 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENV 58
Query: 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL------FGPIPPTLS 314
+ L N L L L+L NSL + L
Sbjct: 59 DGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 315 HLTRLTT 321
++ + T
Sbjct: 118 SVSSILT 124
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.0 bits (111), Expect = 5e-07
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 347 DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP 406
++ L L L + +LDLS N+L P+ L ++
Sbjct: 4 HLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALPPALAALRCLEVL---QASDNALENV 58
Query: 407 SELMNCFSLQSLILSNNSLTG-RIPSEIRNLSYLHELDLSLNFISG 451
+ N LQ L+L NN L + + L L+L N +
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.0 bits (111), Expect = 5e-07
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 321 TLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGP 380
L L + ++ + L + +D+S N+L P + L L L S N L
Sbjct: 2 VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58
Query: 381 IPSTFGHLTLLKFLNLNSNKLNG-SIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYL 439
+ L L +N+L + L++C L L L NSL + R L
Sbjct: 59 DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
Query: 440 HEL 442
+
Sbjct: 117 PSV 119
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.2 bits (109), Expect = 1e-06
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 112 NISGN---IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPST 168
+++ + + L + LDLSHN L P+ L L L L S + L
Sbjct: 4 HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVA 62
Query: 169 LGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQING 211
+ L L +N L L +L L L N +
Sbjct: 63 NLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.8 bits (82), Expect = 0.004
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 416 QSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQ 475
+ L L++ LT + + L + LDLS N + + P + + ++
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ----ASDNA 54
Query: 476 FNRLSGQIPMTIGGLSKLS------GSVPSEIGNCSGLLNVTLSNNSL 517
+ G + L + + +C L+ + L NSL
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 51.0 bits (120), Expect = 1e-07
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 8/170 (4%)
Query: 279 NNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTL-SHLTRLTTLKLFSNQINGSIPLGI 337
L IP + ++L L+ N L L L L L+L NQ+ G P
Sbjct: 18 RGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74
Query: 338 GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLN 397
+++ + + NK++ L L L+L NQ+S +P +F HL L LNL
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
Query: 398 SNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLN 447
SN N + + + L+ + PS++R++ DL +
Sbjct: 135 SNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQI---KDLPHS 180
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 15/182 (8%)
Query: 63 HCKWAGIVCNLNG----------SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSN 112
HC+ + C G + L+ N + F P+L + +
Sbjct: 7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQ 65
Query: 113 ISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHL 172
++G P+ S +Q L L N + L+ L L L + ++ +P + HL
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 173 TRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNK 232
L+ L+L+SN L L P +R ++ DL ++
Sbjct: 126 NSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSE 181
Query: 233 LN 234
Sbjct: 182 FK 183
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 44.0 bits (102), Expect = 2e-05
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 7/175 (4%)
Query: 213 IPLDFGNLRHLKEVDLSGNKLNGPIASTI-GDLTNLNSLDLSSKQLSGPLPQEIGYLENL 271
IP D H E+ L+ N+L + + G L +L L+L QL+G P ++
Sbjct: 23 IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80
Query: 272 VYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQING 331
L L N + L L L+L N + +P + HL LT+L L SN N
Sbjct: 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Query: 332 SIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFG 386
+ L E L + ++ P + ++ DL ++ ++ G
Sbjct: 141 NCHL-AWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKCSSENSEG 191
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 2e-07
Identities = 28/145 (19%), Positives = 44/145 (30%), Gaps = 12/145 (8%)
Query: 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175
+ + L L L N V L S++ + ++ L
Sbjct: 11 QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPEL 67
Query: 176 SILDLSSNSLVG--PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
L+LS+N L + + L L L N++ LD L+E+ L GN L
Sbjct: 68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127
Query: 234 NGPIAST-------IGDLTNLNSLD 251
+ L LD
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRLD 152
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 27/176 (15%)
Query: 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLE 344
+ + + S L L P L L S+ ++ + N+ L
Sbjct: 12 LKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELL 68
Query: 345 RVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGS 404
+++S+N+L + S LK LNL+ N+L
Sbjct: 69 SLNLSNNRLYRL----------------------DDMSSIVQKAPNLKILNLSGNELKSE 106
Query: 405 IPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGM--TPPQHF 458
+ + L+ L L NSL+ + +S + E L + G PP F
Sbjct: 107 RELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAF 162
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 5e-06
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNG--PIPSTLGHLT 173
++ A + +L+ +++ T+ N+ L+ L LS + L + S +
Sbjct: 33 RSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP 91
Query: 174 RLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKE-----VDL 228
L IL+LS N L +L L L N ++ + ++E + L
Sbjct: 92 NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151
Query: 229 SGNKLNGPIA 238
G++L PIA
Sbjct: 152 DGHELPPPIA 161
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.002
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 6/134 (4%)
Query: 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLP 262
+L Q+ + L + L L + L+ S + L
Sbjct: 3 ELKPEQVE-QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAAT-LR 58
Query: 263 QEIGYLENLVYLSLNVNNLTG--PIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLT 320
+ L+ L+L+ N L + S + + +L L+LS N L +L
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 321 TLKLFSNQINGSIP 334
L L N ++ +
Sbjct: 119 ELWLDGNSLSDTFR 132
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 6e-07
Identities = 30/236 (12%), Positives = 65/236 (27%), Gaps = 10/236 (4%)
Query: 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG 235
+ + + IP L L+ ++ F L+++++S N +
Sbjct: 11 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Query: 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT----GPIPSTLGR 291
I + + K + + L ++N +
Sbjct: 68 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127
Query: 292 LTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSN 351
L D+ + N + L L N I + E +N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187
Query: 352 KLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPS 407
LE + + LD+S ++ +L L+ + + K +P+
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (113), Expect = 1e-06
Identities = 28/229 (12%), Positives = 54/229 (23%), Gaps = 31/229 (13%)
Query: 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG 187
++ + +T IPS L N +EL + L L +++S N ++
Sbjct: 11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Query: 188 PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN------------- 234
I + N L +
Sbjct: 68 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127
Query: 235 ---------------GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVN 279
S +G L L+ + + + N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187
Query: 280 NLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQ 328
NL + LD+S + L +L +L ++ +
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 7e-05
Identities = 14/109 (12%), Positives = 25/109 (22%)
Query: 49 WWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRI 108
+ + + S + L ++ F+ E
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184
Query: 109 WYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLS 157
+N+ S ILD+S + L NL L
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 27/228 (11%), Positives = 57/228 (25%), Gaps = 31/228 (13%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305
+ +++ +P ++ N + L + L L +++S N +
Sbjct: 9 SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 306 FGPIPPTLSHLTRLTTLKLFSNQINGSI--PLGIGNLENLERVDMSSNKLEGPIPLTIGD 363
I + N P NL NL+ + +S+ ++ +
Sbjct: 66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125
Query: 364 LTNLIY--------------------------LDLSLNQLSGPIPSTFGHLTLLKFLNLN 397
+ L L+ N + F L + +
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185
Query: 398 SNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLS 445
+N L L +S + + NL L
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 31/225 (13%), Positives = 55/225 (24%), Gaps = 7/225 (3%)
Query: 153 ELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGC 212
S + IPS L L L L +++ N +
Sbjct: 12 VFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68
Query: 213 IPLDFGNLRHLKEVDLSGNKLNGPI--ASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLEN 270
I D + N +L NL L +S+ + +
Sbjct: 69 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128
Query: 271 LVYLSLNV--NNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQ 328
V L + N T S +G L L+ N + + +N
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188
Query: 329 INGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLS 373
+ +D+S ++ + +L L
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 0.001
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 127 LQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNS 184
++ +NNL + V L +SR+ ++ L +L +L +
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 0.002
Identities = 24/204 (11%), Positives = 55/204 (26%), Gaps = 11/204 (5%)
Query: 346 VDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI 405
+K+ IP + N I L L +L F L+ + ++ N + I
Sbjct: 13 FLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69
Query: 406 PSELMNCFSLQSLI-------LSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHF 458
+++ + I L + + +
Sbjct: 70 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129
Query: 459 KQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLD 518
+ + + + + + + N + L + LS+N+
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189
Query: 519 GTIPLEM-GKIIFLEYLDLSYNNI 541
+P ++ LD+S I
Sbjct: 190 EELPNDVFHGASGPVILDISRTRI 213
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.003
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 381 IPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPS 431
F + L+++ +++ L N L++ S +L ++P+
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLK-KLPT 240
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 34/315 (10%), Positives = 81/315 (25%), Gaps = 28/315 (8%)
Query: 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP----IPSTLGRLTSLSDLDLS 301
+L ++++ + + +++ + L+ N + + + L + S
Sbjct: 9 SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 302 HNSLF---GPIPPTLSHLT----RLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354
IP L L + L N P L + L
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127
Query: 355 GPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFS 414
I L ++ + +++ N N +
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187
Query: 415 LQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNH 474
L ++ + N + + + +L + + T +I + +
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247
Query: 475 QF---NRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIF- 530
LS + + GL + L N ++ + +I
Sbjct: 248 LGLNDCLLSARGAAAVVD--------AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299
Query: 531 ----LEYLDLSYNNI 541
L +L+L+ N
Sbjct: 300 KMPDLLFLELNGNRF 314
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 41/326 (12%), Positives = 88/326 (26%), Gaps = 34/326 (10%)
Query: 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLN-------GPIPSTLGHLTRLSIL 178
L++ ++ + ++ + L +++ E+ LS + + ++ L
Sbjct: 9 SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 179 DLSSNSLVGPIPFTLGHLT----QLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
D+ + + IP L L + L N P L L
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127
Query: 235 GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTS 294
+ L ++ + + N T
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187
Query: 295 LSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN---------GSIPLGIGNLENLER 345
L + + N + L +L + ++ + + + NL
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247
Query: 346 VDMSSNKLEGPIPLTIGD------LTNLIYLDLSLNQLSGPIPST-----FGHLTLLKFL 394
+ ++ L + D L L L N++ T + L FL
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307
Query: 395 NLNSNKLN--GSIPSELMNCFSLQSL 418
LN N+ + + E+ FS +
Sbjct: 308 ELNGNRFSEEDDVVDEIREVFSTRGR 333
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 33/313 (10%), Positives = 83/313 (26%), Gaps = 31/313 (9%)
Query: 117 IPSEIGALSKLQILDLSHNNLTG----TIPSKLGNLNNLVELYLS---RSNLNGPIPSTL 169
+ + + ++ + LS N + + + + +L S + IP L
Sbjct: 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82
Query: 170 GHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLS 229
L + + +++ + L + + L L ++
Sbjct: 83 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142
Query: 230 GNKLNGPIASTIGDLTNLNSLDLSSKQLS----GPLPQEIGYLENLVYLSLNVNNLTGPI 285
+ + L S+ +L + L + + N +
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202
Query: 286 PSTLGRLTSLSDLDLSHNSLF---------GPIPPTLSHLTRLTTLKLFSNQINGSIPLG 336
L +L L + L L L L ++
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262
Query: 337 IGN------LENLERVDMSSNKLEGPIPLTIGD-----LTNLIYLDLSLNQLSGPIPSTF 385
+ + L+ + + N++E T+ + +L++L+L+ N+ S
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 322
Query: 386 GHLTLLKFLNLNS 398
+
Sbjct: 323 EIREVFSTRGRGE 335
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (113), Expect = 2e-06
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 20/139 (14%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPAKHPQEILSLFSSTSDP 752
N+LL + A +FG+++ L +D S R+ ++ AP S S
Sbjct: 139 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSY 198
Query: 753 HITLTYILDQRISPPKKQKIVQDIAL----------------ASIVALACLQSKPKSVPT 796
+T+ L P KK K + +A + C K + P
Sbjct: 199 GVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPD 258
Query: 797 MQRVSQEFLKFPYLDLETR 815
V Q ++ Y L ++
Sbjct: 259 FLTVEQR-MRACYYSLASK 276
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 2e-05
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 695 NNILLNSEFEAFFGNFGVARLLNSDSSNRTL-IAGTYRYIAPAKHPQEILSLFSSTSDPH 753
N L+N + +FG++R + D ++ R+ P S S
Sbjct: 129 RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFG 188
Query: 754 ITLTYILDQRISPPKK-------QKIVQDIAL---------ASIVALACLQSKPKSVPTM 797
+ + I P ++ + I Q + L + +C K PT
Sbjct: 189 VLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTF 248
Query: 798 QRVSQEFL 805
+ + L
Sbjct: 249 KILLSNIL 256
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 3e-05
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 18/130 (13%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTL--IAGTYRYIAPAKHPQEILSLFSSTSDPH 753
N+L+ + +FG+A+LL ++ +++A I + S
Sbjct: 141 NVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYG 200
Query: 754 ITLTYILDQRISPPKKQKIVQDIAL----------------ASIVALACLQSKPKSVPTM 797
+T+ ++ P + ++ ++ + C S P
Sbjct: 201 VTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKF 260
Query: 798 QRVSQEFLKF 807
+ + EF K
Sbjct: 261 RELIIEFSKM 270
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.3 bits (104), Expect = 3e-05
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 17/126 (13%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNR-TLIAGTYRYIAPAKHPQEILSLFSSTSDPHI 754
N L+ +FG++RL+ D+ ++ AP S+ S +
Sbjct: 145 NCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGV 204
Query: 755 TLTYILDQRISPPKK-------QKIVQDIAL---------ASIVALACLQSKPKSVPTMQ 798
L I +SP + + +D + + AC Q P P+
Sbjct: 205 LLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFA 264
Query: 799 RVSQEF 804
+ Q F
Sbjct: 265 EIHQAF 270
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 3e-05
Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 28/135 (20%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAP----------------- 735
N+LL + G+FG+ R L + + + + + AP
Sbjct: 141 NLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMF 200
Query: 736 AKHPQEILSL----FSSTSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKP 791
E+ + + + I L I + P+ + QDI V + C KP
Sbjct: 201 GVTLWEMFTYGQEPWIGLNGSQI-LHKIDKEGERLPRPEDCPQDIY---NVMVQCWAHKP 256
Query: 792 KSVPTMQRVSQEFLK 806
+ PT + L+
Sbjct: 257 EDRPTFVALRDFLLE 271
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 5e-05
Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 5/131 (3%)
Query: 363 DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSN 422
+ LDL ++ I + L ++ + N++ L++L+++N
Sbjct: 16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNN 72
Query: 423 NSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQ 482
N + + L L EL L+ N + + S+ + +
Sbjct: 73 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL--RNPVTNKKHY 130
Query: 483 IPMTIGGLSKL 493
I + ++
Sbjct: 131 RLYVIYKVPQV 141
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 9e-05
Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 4/139 (2%)
Query: 383 STFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHEL 442
+ + + + L+L K+ I + ++ S+N + R L L L
Sbjct: 12 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 68
Query: 443 DLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIG 502
++ N I + L + L + + + +
Sbjct: 69 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128
Query: 503 NCSGLLNVTLSN-NSLDGT 520
+ + + LD
Sbjct: 129 HYRLYVIYKVPQVRVLDFQ 147
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 7/137 (5%)
Query: 217 FGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSL 276
+ N +E+DL G K+ I + L +++D S ++ L L L +
Sbjct: 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLV 70
Query: 277 NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG-PIPPTLSHLTRLTTLKLFS---NQINGS 332
N N + L L++L L++NSL L+ L LT L +
Sbjct: 71 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130
Query: 333 IPLGIGNLENLERVDMS 349
I + + +D
Sbjct: 131 RLYVIYKVPQVRVLDFQ 147
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 2e-04
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 7/134 (5%)
Query: 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327
L L + I + L +D S N + L RL TL + +N
Sbjct: 17 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNN 73
Query: 328 QINGSIPLGIGNLENLERVDMSSNKLEG-PIPLTIGDLTNLIYLDLS---LNQLSGPIPS 383
+I L +L + +++N L + L +L YL + +
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133
Query: 384 TFGHLTLLKFLNLN 397
+ ++ L+
Sbjct: 134 VIYKVPQVRVLDFQ 147
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.002
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 7/137 (5%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
++ + I I + L + +D S N + L L L +
Sbjct: 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLV 70
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD 216
+ + + L L+ L L++NSLV + T
Sbjct: 71 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130
Query: 217 ----FGNLRHLKEVDLS 229
+ ++ +D
Sbjct: 131 RLYVIYKVPQVRVLDFQ 147
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 7e-05
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 19/129 (14%)
Query: 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPAKHPQEILSLFSSTSD 751
NILL+ + +FG+AR + D + +++AP + ++ S
Sbjct: 162 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWS 221
Query: 752 PHITLTYILDQRISPPKKQKIVQDIAL-----------------ASIVALACLQSKPKSV 794
+ L I SP KI ++ L C +P
Sbjct: 222 FGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQR 281
Query: 795 PTMQRVSQE 803
PT + +
Sbjct: 282 PTFSELVEH 290
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.3 bits (101), Expect = 7e-05
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNR--TLIAGTYRYIAPAKHPQEILSLFSSTSDPH 753
N L+ +FG++R + S + A R++ P + S
Sbjct: 170 NCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYG 229
Query: 754 ITLTYILDQRISP---PKKQKIVQDIALASI-------------VALACLQSKPKSVPTM 797
+ L I + P ++++ + +I + C P P+
Sbjct: 230 VVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSF 289
Query: 798 QRVSQEF 804
+ +
Sbjct: 290 CSIHRIL 296
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (101), Expect = 8e-05
Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 21/130 (16%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTL-----IAGTYRYIAPAKHPQEILSLFSSTS 750
NIL+NS +FG++R L D+S+ T R+ AP + S
Sbjct: 158 NILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVW 217
Query: 751 DPHITLTYILDQRISPPKK-------QKIVQDIAL---------ASIVALACLQSKPKSV 794
I + ++ P I QD L + L C Q
Sbjct: 218 SYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHR 277
Query: 795 PTMQRVSQEF 804
P ++
Sbjct: 278 PKFGQIVNTL 287
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 9e-05
Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 25/129 (19%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTL--IAGTYRYIAPAKHPQ------------- 740
N+L+ +FG+AR + SDS+ +++AP +
Sbjct: 194 NVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYG 253
Query: 741 ----EILSLFS---STSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKS 793
EI SL ++ + ++I + + +C +
Sbjct: 254 ILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYI---IMQSCWAFDSRK 310
Query: 794 VPTMQRVSQ 802
P+ ++
Sbjct: 311 RPSFPNLTS 319
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (96), Expect = 3e-04
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 31/136 (22%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKHPQEILS--LFSSTSD-- 751
N+ L+ + G+FG+AR+LN D+S GT Y++P E ++ ++ SD
Sbjct: 144 NVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSP-----EQMNRMSYNEKSDIW 198
Query: 752 --------------PHITLTYI-LDQRISPPKKQKIVQDI--ALASIVALACLQSKPKSV 794
P + L +I K ++I L I+ L K
Sbjct: 199 SLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEII-TRMLNLKDYHR 257
Query: 795 PTMQRVSQEFLKFPYL 810
P++ +E L+ P +
Sbjct: 258 PSV----EEILENPLI 269
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (96), Expect = 3e-04
Identities = 17/137 (12%), Positives = 46/137 (33%), Gaps = 33/137 (24%)
Query: 696 NILLNSE-FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKHPQEILS-LFSSTSDPH 753
NI + G+ G+A L + + + GT ++AP E+ + + D +
Sbjct: 144 NIFITGPTGSVKIGDLGLATLKRASFAKA--VIGTPEFMAP-----EMYEEKYDESVDVY 196
Query: 754 ---ITLTYIL---------------DQRISPPKKQKIVQDIALASIVALA--CLQSKPKS 793
+ + + +R++ K +A+ + + C++
Sbjct: 197 AFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDE 256
Query: 794 VPTMQRVSQEFLKFPYL 810
++ ++ L +
Sbjct: 257 RYSI----KDLLNHAFF 269
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 3e-04
Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 25/131 (19%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPAKHPQ------------ 740
NIL+NS +FG++R+L D + R+ AP
Sbjct: 140 NILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSF 199
Query: 741 -----EILSLFS--STSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKS 793
E+++ + + ++ P I + + C Q +
Sbjct: 200 GIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQ---LMMQCWQQERAR 256
Query: 794 VPTMQRVSQEF 804
P +
Sbjct: 257 RPKFADIVSIL 267
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (96), Expect = 3e-04
Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 23/132 (17%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSD-SSNRTLIAGTYRYIAPAKHPQEILSLFS------- 747
NIL+ +FG+ARL+ + + R ++ AP ++ S
Sbjct: 143 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 202
Query: 748 ------------STSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP 795
+ + +++ P + + + + C + +P+ P
Sbjct: 203 LLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHD---LMCQCWRKEPEERP 259
Query: 796 TMQRVSQEFLKF 807
T + + +
Sbjct: 260 TFEYLQAFLEDY 271
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (95), Expect = 4e-04
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 17/129 (13%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSN-RTLIAGTYRYIAPAKHPQEILSLFSSTSDPHI 754
NIL++ +FG+ARL+ + R ++ AP ++ S I
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 198
Query: 755 TLTYILDQRISPPKK-------QKIVQDIAL---------ASIVALACLQSKPKSVPTMQ 798
LT I+ P Q + + + + C + +P+ PT
Sbjct: 199 LLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 258
Query: 799 RVSQEFLKF 807
+ F
Sbjct: 259 YLRSVLEDF 267
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 5e-04
Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 4/149 (2%)
Query: 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPS-TLGHLTRLSILDLSSN 183
L + + L NL ELY+ + L L L L + +
Sbjct: 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIAST-IG 242
L P +L+ L L N + + L+E+ LSGN L+ A +
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125
Query: 243 DLTNLNSLDLSSKQLSGPLPQEIGYLENL 271
+ ++L + ++ N
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 0.001
Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 4/145 (2%)
Query: 269 ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPP-TLSHLTRLTTLKLFSN 327
L + L +L++L + + + L L L L + +
Sbjct: 8 HGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 328 QINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPST-FG 386
+ P L R+++S N LE + +L L LS N L
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125
Query: 387 HLTLLKFLNLNSNKLNGSIPSELMN 411
+ KL L +
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAH 150
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.004
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 3/120 (2%)
Query: 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRSNLNGPIPSTLGHLTR 174
+ + L L + + + + L L L + +S L P R
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 175 LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQIN-GCIPLDFGNLRHLKEVDLSGNKL 233
LS L+LS N+L + + L L L N ++ C + KL
Sbjct: 82 LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (91), Expect = 0.001
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 23/122 (18%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKHPQEILSLFSSTSDPH-- 753
NIL + + +FGV+ R GT ++AP E++ +S P+
Sbjct: 140 NILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAP-----EVVMCETSKDRPYDY 194
Query: 754 --------ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805
ITL + + PP + + L +S+P ++ R S F
Sbjct: 195 KADVWSLGITLIEMAEIE--PPHHELNPMRV------LLKIAKSEPPTLAQPSRWSSNFK 246
Query: 806 KF 807
F
Sbjct: 247 DF 248
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (91), Expect = 0.001
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 30/139 (21%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTL--IAGTYRYIAP--------AKHPQEILSL 745
N+LL+ +FG+A + ++ R L + GT Y+AP P ++ S
Sbjct: 133 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 192
Query: 746 -------------FSSTSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPK 792
+ SD + +++ +KI D A +++ L P
Sbjct: 193 GIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKI--DSAPLALL-HKILVENPS 249
Query: 793 SVPTMQRVSQEFLKFPYLD 811
+ T+ + K + +
Sbjct: 250 ARITI----PDIKKDRWYN 264
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (89), Expect = 0.002
Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 26/144 (18%)
Query: 695 NNILLNSEFEAFFGNFGVARLLNSDSSN---RTLIAGTYRYIAPAKHPQ----------- 740
N+LL ++ A +FG+++ L +D + +T ++ AP
Sbjct: 136 RNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWS 195
Query: 741 ------EILSLFSS--TSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPK 792
E S +T +L++ +++ + C +
Sbjct: 196 FGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMY---DLMNLCWTYDVE 252
Query: 793 SVPTMQRVSQEFLKFPYLDLETRG 816
+ P V + L+ Y D+ G
Sbjct: 253 NRPGFAAV-ELRLRNYYYDVVNEG 275
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.4 bits (89), Expect = 0.002
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 33/138 (23%)
Query: 695 NNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKHPQEILSLFSSTSD--- 751
NILL+ G+FG A ++ +S GT ++AP + D
Sbjct: 144 GNILLSEPGLVKLGDFGSASIMAPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWS 199
Query: 752 -------------------PHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPK 792
L +I + + + V +CLQ P+
Sbjct: 200 LGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEY--FRNFV-DSCLQKIPQ 256
Query: 793 SVPTMQRVSQEFLKFPYL 810
PT + LK ++
Sbjct: 257 DRPTS----EVLLKHRFV 270
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (87), Expect = 0.004
Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 27/135 (20%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKHPQ--------------- 740
NILL + +FG + + S R+ + GT ++AP +
Sbjct: 146 NILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIM 205
Query: 741 --EILS---LFSSTSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP 795
E++ + + + + +K+ + CL +
Sbjct: 206 AIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAI--FRDFL-NRCLDMDVEKRG 262
Query: 796 TMQRVSQEFLKFPYL 810
+ +E L+ +L
Sbjct: 263 SA----KELLQHQFL 273
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 818 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.8 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.77 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.75 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.75 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.75 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.74 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.72 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.72 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.72 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.71 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.69 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.67 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.66 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.66 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.65 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.65 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.64 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.63 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.63 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.62 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.61 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.61 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.6 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.6 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.59 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.58 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.57 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.54 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.54 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.53 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.53 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.53 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.52 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.51 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.5 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.48 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.47 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.47 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.47 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.46 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.46 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.44 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.43 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.43 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.43 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.43 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.43 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.42 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.42 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.42 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.41 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.41 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.41 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.41 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.4 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.39 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.37 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.37 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.36 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.35 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.33 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.3 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.3 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.28 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.26 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.22 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.21 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.18 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.14 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.12 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.1 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.1 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.09 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.04 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 98.97 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.18 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.04 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.6 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.45 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 97.38 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.77 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.6 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=6.6e-37 Score=323.96 Aligned_cols=287 Identities=30% Similarity=0.497 Sum_probs=181.9
Q ss_pred CCCHHHHHHHHcCCCC-----CCCCCCCCCCCCCCC--ccceeeCCCC---CEEEEEecCCccccCCCCCCCcCCCCCCc
Q 003465 35 VPIRLEREALLNTGWW-----NNSREKASNHSDHCK--WAGIVCNLNG---SIIRISLSGVNGIRGKLDQFNFSCFPNLE 104 (818)
Q Consensus 35 ~~~~~~~~~ll~~~~~-----~~~~~~~~~~~~~c~--w~gv~c~~~~---~v~~l~l~~~~g~~~~l~~~~l~~l~~L~ 104 (818)
.|+++||+||++++.. .+++|. .++|||. |.||+|+..+ ||+.|
T Consensus 2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~--~~~d~C~~~w~gv~C~~~~~~~~v~~L------------------------ 55 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLGNPTTLSSWL--PTTDCCNRTWLGVLCDTDTQTYRVNNL------------------------ 55 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCC--TTSCTTTTCSTTEEECCSSSCCCEEEE------------------------
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCCCC--CCCCCCCCcCCCeEEeCCCCcEEEEEE------------------------
Confidence 5899999999987631 347786 4789994 9999998543 45554
Q ss_pred EEEcCCCCCcc--cCCccccCCCcCceecccC-cccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 105 SFRIWYSNISG--NIPSEIGALSKLQILDLSH-NNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 105 ~L~L~~n~~~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
+|+++.+.+ .+|+.++++++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+.+|++++++
T Consensus 56 --~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~ 133 (313)
T d1ogqa_ 56 --DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp --EEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred --ECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccc
Confidence 444555544 4667777777777777775 67777777777777777777777777776666677777777777777
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCC-CEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHL-KEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
+|.+.+.+|..+.++++|+++++++|.+.+.+|..+..+.++ +.+++++|++++..+..+..+..+ .++++.+...+.
T Consensus 134 ~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~ 212 (313)
T d1ogqa_ 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGD 212 (313)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEEC
T ss_pred cccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 777777777777777777777777777777777666666654 566666666665555555444333 455555555555
Q ss_pred CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCC
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL 340 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 340 (818)
+|..+..+++|+.+++++|.+++.++ .++.+++|+.|++++|++++.+|..++.+++|++|+|++|+++|.+|. ++++
T Consensus 213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L 290 (313)
T d1ogqa_ 213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL 290 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence 55555555555555555555554333 344455555555555555555555555555555555555555544442 2344
Q ss_pred CCCCEEEcCCCc
Q 003465 341 ENLERVDMSSNK 352 (818)
Q Consensus 341 ~~L~~L~Ls~n~ 352 (818)
++|+.+++++|+
T Consensus 291 ~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 291 QRFDVSAYANNK 302 (313)
T ss_dssp GGSCGGGTCSSS
T ss_pred CCCCHHHhCCCc
Confidence 444444444443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=7.1e-30 Score=269.49 Aligned_cols=253 Identities=30% Similarity=0.452 Sum_probs=141.0
Q ss_pred CCEEEccCCcCCCC--CchhhcCCCCCCeeeccC-CcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEe
Q 003465 295 LSDLDLSHNSLFGP--IPPTLSHLTRLTTLKLFS-NQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLD 371 (818)
Q Consensus 295 L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 371 (818)
++.|+|++|.+.+. +|..++++++|++|+|++ |++.|.+|..++++++|++|+|++|++.+..+..+..++.|+.++
T Consensus 52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~ 131 (313)
T d1ogqa_ 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence 34444444444332 344444444444444443 444444444444444455555555444444444444445555555
Q ss_pred ccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCC-CEEecccCcCcccCCccccCCCCCCEEECcCCcCC
Q 003465 372 LSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSL-QSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450 (818)
Q Consensus 372 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 450 (818)
+++|.+.+.+|..+..++.|+.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..+ .++++.|.+.
T Consensus 132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~ 210 (313)
T d1ogqa_ 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEE
T ss_pred cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 55555444455555555555555555555555555544444443 445555555555555444444332 4555555555
Q ss_pred ccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCC
Q 003465 451 GMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIF 530 (818)
Q Consensus 451 ~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 530 (818)
+.+|..+.... .++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|..++++++
T Consensus 211 ~~~~~~~~~~~------~l~~l~~~~~~l~~~~~---------------~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~ 269 (313)
T d1ogqa_ 211 GDASVLFGSDK------NTQKIHLAKNSLAFDLG---------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp ECCGGGCCTTS------CCSEEECCSSEECCBGG---------------GCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ccccccccccc------ccccccccccccccccc---------------ccccccccccccCccCeecccCChHHhCCCC
Confidence 55444443333 45555555555554433 3556677788888888888888888888888
Q ss_pred CCeeeCcCCCCcccCCc-ccccCCCCCcccCcCCCC-CCCC
Q 003465 531 LEYLDLSYNNIPGTVPE-FINRIMPADLVPMINFSI-SPTP 569 (818)
Q Consensus 531 L~~L~ls~N~l~g~ip~-~~~~~~~~~~~~~n~~~~-~~~~ 569 (818)
|++|||++|+|+|.||+ ...+.++...+.+|+.+| .|++
T Consensus 270 L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp 310 (313)
T d1ogqa_ 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred CCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC
Confidence 88888888888888887 456677777778887777 4543
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=2.3e-27 Score=257.78 Aligned_cols=190 Identities=30% Similarity=0.388 Sum_probs=94.3
Q ss_pred cCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCE
Q 003465 314 SHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKF 393 (818)
Q Consensus 314 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 393 (818)
..+++++.+++++|.+++..| +..+++|+.|++++|.+.. ...+..+++|+.|++++|.+++..+ +..+++|+.
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 267 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 267 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc--ccccccCCE
Confidence 334444444444444433222 1223444444444444432 1133344444444444444443221 334444444
Q ss_pred EEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEE
Q 003465 394 LNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVN 473 (818)
Q Consensus 394 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ 473 (818)
|++++|++++.. .+..++.++.++++.|.+.+. ..+..+++++.|++++|++++..+ +..+. +|+.|+
T Consensus 268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~------~L~~L~ 335 (384)
T d2omza2 268 LKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLT------KLQRLF 335 (384)
T ss_dssp EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCT------TCCEEE
T ss_pred eeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCC------CCCEEE
Confidence 444444444321 133444445555555544421 224444455555555555544321 22222 455555
Q ss_pred CCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCC
Q 003465 474 HQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYN 539 (818)
Q Consensus 474 ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 539 (818)
+++|++++ + | .++++++|+.||+++|++++.+| +.++++|++|+|++|
T Consensus 336 L~~n~l~~-l--------------~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 336 FANNKVSD-V--------------S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCSSCCCC-C--------------G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCCCCC-C--------------h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 55555442 1 1 46678888899999888887765 788889999998887
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=3.4e-26 Score=248.50 Aligned_cols=343 Identities=28% Similarity=0.343 Sum_probs=201.7
Q ss_pred CCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCE
Q 003465 98 SCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177 (818)
Q Consensus 98 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 177 (818)
..+.+|++|++++++++.. +.+..+++|++|+|++|++++. | .++++++|++|++++|++.+. + .++++++|+.
T Consensus 41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~ 114 (384)
T d2omza2 41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTG 114 (384)
T ss_dssp HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccccc-c-cccccccccc
Confidence 3456788888888887742 3577888888888888888854 3 288888888888888888753 3 3788888888
Q ss_pred EEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCC
Q 003465 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQL 257 (818)
Q Consensus 178 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 257 (818)
|+++++.+++..+ ......+..+....|.+....+................. ....+.............|..
T Consensus 115 L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 187 (384)
T d2omza2 115 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNKV 187 (384)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSCC
T ss_pred ccccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----hhhhhcccccccccccccccc
Confidence 8888888775433 334566777777766665333222222221111111111 112233333444444444433
Q ss_pred CCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccc
Q 003465 258 SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI 337 (818)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 337 (818)
. .......+++++.+++++|.+++..| +..+++|+.|++++|.+... +.+..+++|+.|++++|.+++..+ +
T Consensus 188 ~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 259 (384)
T d2omza2 188 S--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 259 (384)
T ss_dssp C--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred c--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--c
Confidence 2 22344556666666666666664433 34455666666666666532 245566666666666666654332 4
Q ss_pred cCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 003465 338 GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQS 417 (818)
Q Consensus 338 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 417 (818)
..+++|+.|++++|++.+.. .+..++.++.++++.|.+++. ..+..+++++.|++++|++++.. .+..+++|++
T Consensus 260 ~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~ 333 (384)
T d2omza2 260 SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQR 333 (384)
T ss_dssp TTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCE
T ss_pred cccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCE
Confidence 55666666666666665322 245566666666666666542 23555666666666666666432 2555666666
Q ss_pred EecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCC
Q 003465 418 LILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFN 477 (818)
Q Consensus 418 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n 477 (818)
|++++|++++ ++ .+.++++|++|++++|++++..| +..+. +|+.|++++|
T Consensus 334 L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~------~L~~L~L~~N 383 (384)
T d2omza2 334 LFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLT------RITQLGLNDQ 383 (384)
T ss_dssp EECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCT------TCSEEECCCE
T ss_pred EECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCC------CCCEeeCCCC
Confidence 6666666653 22 46666666666666666665533 33333 4555555544
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=4.7e-24 Score=223.59 Aligned_cols=222 Identities=25% Similarity=0.362 Sum_probs=119.5
Q ss_pred cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcc
Q 003465 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 205 (818)
++++|+|++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|+++. +|.. ....++.|++.
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~ 108 (305)
T d1xkua_ 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRVH 108 (305)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEECC
T ss_pred CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhcc
Confidence 45555555555553333455555566666666665554445555556666666666665552 3322 22455566666
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCcCC--CCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCC
Q 003465 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLN--GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG 283 (818)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 283 (818)
.|.+.+..+..+.....++.++...|... ......+..+++|+.+++++|.+.. +|.. .+++|++|++++|..+.
T Consensus 109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~ 185 (305)
T d1xkua_ 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITK 185 (305)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCE
T ss_pred ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCC
Confidence 66555544444555555555555554322 1223344555555666666555542 2222 23456666666665555
Q ss_pred cCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCccc
Q 003465 284 PIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354 (818)
Q Consensus 284 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 354 (818)
..+..+..++.++.|++++|.+.+..+..+..+++|++|+|++|+++ .+|.++..+++|++|++++|+++
T Consensus 186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence 55555555666666666666655555555555556666666665555 34445555555555555555555
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.7e-23 Score=219.26 Aligned_cols=247 Identities=25% Similarity=0.313 Sum_probs=132.5
Q ss_pred CCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEcc
Q 003465 174 RLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLS 253 (818)
Q Consensus 174 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 253 (818)
.++++|-+++.++ .+|..+. +++++|+|++|+++...+..|.++++|++|++++|.+....+..|.++++|+.|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 3566666666666 4454443 466677777776665544556666666666666666665555566666666666666
Q ss_pred CCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCc
Q 003465 254 SKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSI 333 (818)
Q Consensus 254 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 333 (818)
+|+++. +|.. ....++.|.+..|.+.+..+..+.....+..++...|.... ....
T Consensus 88 ~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------------~~~~ 142 (305)
T d1xkua_ 88 KNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIE 142 (305)
T ss_dssp SSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBC
T ss_pred CCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccc----------------------cCCC
Confidence 666653 2322 12345555555555554333334444444444444443211 1112
Q ss_pred CccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCC
Q 003465 334 PLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF 413 (818)
Q Consensus 334 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 413 (818)
+..+..+++|+.+++++|.+.. ++.. .+++|+.|++++|..++..+..|..++.++.|++++|.+.+..+..+..++
T Consensus 143 ~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~ 219 (305)
T d1xkua_ 143 NGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219 (305)
T ss_dssp TTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred ccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccc
Confidence 2234444555555555555442 2221 234555555555555555555555555566666666655555555555556
Q ss_pred CCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCcc
Q 003465 414 SLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGM 452 (818)
Q Consensus 414 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 452 (818)
+|++|+|++|+++ .+|..+.++++|+.|++++|+|+.+
T Consensus 220 ~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i 257 (305)
T d1xkua_ 220 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257 (305)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred cceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence 6666666666655 3455555566666666666655543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.4e-23 Score=215.60 Aligned_cols=209 Identities=26% Similarity=0.193 Sum_probs=143.8
Q ss_pred CcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEcc-CCcCCCCCchhhcCCCCCCeee
Q 003465 245 TNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLS-HNSLFGPIPPTLSHLTRLTTLK 323 (818)
Q Consensus 245 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls-~n~l~~~~~~~l~~l~~L~~L~ 323 (818)
+.+++|+|++|+++...+..|..+++|++|++++|.+....+..+..++.+..++.. .+.+....+..|.++++|++|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 345555666665554444455556666666666666665555555556666666543 3444444556666677777777
Q ss_pred ccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcc
Q 003465 324 LFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG 403 (818)
Q Consensus 324 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 403 (818)
+++|.+....+..+..+++|+.+++++|++++..+..+..+++|+.|++++|++++..+..|.++++|+.+++++|++++
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~ 191 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence 77777665555556667777777777777776656667777777778887777777667777777888888888888877
Q ss_pred cCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccC
Q 003465 404 SIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT 453 (818)
Q Consensus 404 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 453 (818)
..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|++....
T Consensus 192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C 241 (284)
T d1ozna_ 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (284)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence 77777888888888888888887766677778888888888888776543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.4e-23 Score=215.63 Aligned_cols=205 Identities=28% Similarity=0.281 Sum_probs=107.9
Q ss_pred CcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEcc-CCCCCCCCCccccCCCCCcEEEcc
Q 003465 199 LTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLS-SKQLSGPLPQEIGYLENLVYLSLN 277 (818)
Q Consensus 199 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~l~~l~~L~~L~L~ 277 (818)
+++|+|++|+++...+..|.++++|++|++++|++....+..+..+..++.++.. .+.++...+..+..+++|++|+++
T Consensus 34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~ 113 (284)
T d1ozna_ 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (284)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence 3444444444443333334444444444444444443333344444444444332 233333334444455555555555
Q ss_pred ccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccC
Q 003465 278 VNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357 (818)
Q Consensus 278 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 357 (818)
+|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|++.+..+..+.++++|+.+++++|++.+..
T Consensus 114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~ 193 (284)
T d1ozna_ 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (284)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence 55554444444445555555555555555444455555556666666666655544555556666666666666666555
Q ss_pred CcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcc
Q 003465 358 PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG 403 (818)
Q Consensus 358 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 403 (818)
|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+..
T Consensus 194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred hhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 6666666666666666666666555566666666666666666553
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.5e-21 Score=197.87 Aligned_cols=198 Identities=27% Similarity=0.269 Sum_probs=116.2
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
.+.+.+.++++++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|+++ .+| .++.+++|++|+|+
T Consensus 11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS 85 (266)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECC
T ss_pred CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccc
Confidence 3444556665655 3454443 35666666666666544456666666666666666665 233 24556666666666
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPL 261 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 261 (818)
+|+++. .+..+..+++|++|++++|.+....+..+..+.++++|++++|.++...+..+..+++|+.|++++|++++..
T Consensus 86 ~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~ 164 (266)
T d1p9ag_ 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (266)
T ss_dssp SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred cccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence 666653 3445566666666666666666555555556666666666666665555555555666666666666666555
Q ss_pred CccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC
Q 003465 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus 165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 555555566666666666655 45555555555555555555543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.4e-21 Score=196.10 Aligned_cols=201 Identities=30% Similarity=0.290 Sum_probs=128.7
Q ss_pred cCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcE
Q 003465 122 GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT 201 (818)
Q Consensus 122 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 201 (818)
.+...+...+.++++++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.++. ++ .++.+++|++
T Consensus 7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 81 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT 81 (266)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence 34555666678888887 4666554 467888888888875555677788888888888887763 33 3456777777
Q ss_pred EEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEcccccc
Q 003465 202 LKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNL 281 (818)
Q Consensus 202 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 281 (818)
|++++|+++. .+..+.++++|+.|++++|.+....+..+..+.+++.|++++|.++...+..+..+++|+.|++++|++
T Consensus 82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l 160 (266)
T d1p9ag_ 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (266)
T ss_dssp EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence 7777777763 355666677777777777766665555666666666666666666655555555556666666666666
Q ss_pred CCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcC
Q 003465 282 TGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQI 329 (818)
Q Consensus 282 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 329 (818)
++..+..+..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|.+
T Consensus 161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence 6555555555556666666666555 4444444555555555555544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=3.7e-17 Score=173.97 Aligned_cols=300 Identities=24% Similarity=0.290 Sum_probs=189.3
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
++++|+|+++.++ .+|+. .++|++|+|++|+++ .+|..+ .+|+.|++++|+++ .++. + .+.|++|+++
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEECC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--cccccccccc
Confidence 5778888888887 46653 467888888888888 567653 46888888888877 3332 1 1358888888
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPL 261 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 261 (818)
+|.+.. +| .++.+++|++|++++|.+... +. ....+..+.+..+... ....+..++.++.|++++|.....
T Consensus 107 ~n~l~~-lp-~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~- 177 (353)
T d1jl5a_ 107 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL- 177 (353)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC-
T ss_pred cccccc-cc-chhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccccc-
Confidence 888874 45 357788888888888877643 22 2356677777666543 344566777888888888776632
Q ss_pred CccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCC
Q 003465 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLE 341 (818)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 341 (818)
+. .....+.+...++.+. .++ .+..++.|+.+++++|.... .+ ....++..+.+.++.+... + ...+
T Consensus 178 ~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-~---~~~~ 244 (353)
T d1jl5a_ 178 PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-P---ELPQ 244 (353)
T ss_dssp CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-C---CCCT
T ss_pred cc---cccccccccccccccc-ccc-cccccccccccccccccccc-cc---ccccccccccccccccccc-c---cccc
Confidence 21 1233455666655554 333 34667788888888777653 22 2345677777777766532 2 2234
Q ss_pred CCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003465 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILS 421 (818)
Q Consensus 342 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 421 (818)
.+...++..+.+.+... -.......++..+.+.+. ...+++|++|++++|+++ .+|.. +++|+.|+|+
T Consensus 245 ~l~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~ 312 (353)
T d1jl5a_ 245 SLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIAS 312 (353)
T ss_dssp TCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred ccccccccccccccccc----ccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECC
Confidence 56666666665542110 112344555665555432 234567778888877776 45533 4677777787
Q ss_pred cCcCcccCCccccCCCCCCEEECcCCcCCc
Q 003465 422 NNSLTGRIPSEIRNLSYLHELDLSLNFISG 451 (818)
Q Consensus 422 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 451 (818)
+|+++ .+|.. +++|++|++++|+++.
T Consensus 313 ~N~L~-~l~~~---~~~L~~L~L~~N~L~~ 338 (353)
T d1jl5a_ 313 FNHLA-EVPEL---PQNLKQLHVEYNPLRE 338 (353)
T ss_dssp SSCCS-CCCCC---CTTCCEEECCSSCCSS
T ss_pred CCcCC-ccccc---cCCCCEEECcCCcCCC
Confidence 77776 45542 4567777777777764
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.80 E-value=8.1e-17 Score=171.24 Aligned_cols=279 Identities=27% Similarity=0.309 Sum_probs=165.2
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.+|++|||+++.++ .+|+. .++|++|++++|+++ .+|.. +.+|+.|++++|.++. ++. + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence 46899999999998 57753 468999999999998 66765 4578999999998873 332 1 146889999
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
++|.+.. +| .++.+++|++|++++|.+... +. ....+..+.+..+.... ...+..++.++.|+++.|.....
T Consensus 106 ~~n~l~~-lp-~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~ 177 (353)
T d1jl5a_ 106 SNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL 177 (353)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred ccccccc-cc-chhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceeccccccccccc
Confidence 9998874 44 367788888888888877632 22 23556667776655442 33466677778888877776632
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCC
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 364 (818)
+. .....+.+...++.+. .++ .+..++.|+.+++++|.... ++. ...++..+.+..+.+... + ...
T Consensus 178 -~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~---~~~ 243 (353)
T d1jl5a_ 178 -PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-P---ELP 243 (353)
T ss_dssp -CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-C---CCC
T ss_pred -cc---cccccccccccccccc-ccc-cccccccccccccccccccc-ccc---cccccccccccccccccc-c---ccc
Confidence 21 1233445555555443 222 24556677777777666542 222 234566666666665421 1 122
Q ss_pred CCCCEEeccCCcCCCCCCcccCCC-CCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEE
Q 003465 365 TNLIYLDLSLNQLSGPIPSTFGHL-TLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELD 443 (818)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 443 (818)
+.+...++..+.+.+. ..+ ......++..+.+.+. ...+++|++|+|++|+++ .+|. .+++|+.|+
T Consensus 244 ~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~ 310 (353)
T d1jl5a_ 244 QSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLI 310 (353)
T ss_dssp TTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred cccccccccccccccc-----ccccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEE
Confidence 3455555555444321 111 2334455555554422 122455666666666655 3443 234555555
Q ss_pred CcCCcCC
Q 003465 444 LSLNFIS 450 (818)
Q Consensus 444 Ls~N~l~ 450 (818)
+++|+|+
T Consensus 311 L~~N~L~ 317 (353)
T d1jl5a_ 311 ASFNHLA 317 (353)
T ss_dssp CCSSCCS
T ss_pred CCCCcCC
Confidence 5555554
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=7.1e-20 Score=189.58 Aligned_cols=173 Identities=20% Similarity=0.229 Sum_probs=103.8
Q ss_pred cccchHHHHHHHhhhhhh---------cccc----CcEEEEEcC-CC---cEEEEEeccccc-cchhhhhHhhh------
Q 003465 636 GRIAFEEIIRATEDLISD---------IALE----LDVTAAFTK-HG---CLVAEYGSEQGR-SAFFKSFQNEA------ 691 (818)
Q Consensus 636 ~~~~~~~l~~at~~f~~~---------~~ig----g~vy~~~~~-~g---~~vAvK~~~~~~-~~~~~~f~~E~------ 691 (818)
..++|+++.+||.+|+.+ ..|| |+||+|... +| ..||||.+.... ....++|.+|+
T Consensus 5 d~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l 84 (299)
T d1jpaa_ 5 DPFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF 84 (299)
T ss_dssp CGGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC
Confidence 357899999999999754 3566 899999863 23 368999765443 33456799998
Q ss_pred ------------------------------------------------------------------cc---ccccccCCC
Q 003465 692 ------------------------------------------------------------------HV---FNNILLNSE 702 (818)
Q Consensus 692 ------------------------------------------------------------------h~---~~NILLd~~ 702 (818)
|+ |+|||||++
T Consensus 85 ~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~ 164 (299)
T d1jpaa_ 85 DHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSN 164 (299)
T ss_dssp CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT
T ss_pred CCCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCC
Confidence 22 899999999
Q ss_pred CcccccccccceeccCCCCC-----ccccccccceeCCC---CCCcc-hHHHHhc----------ccC--CCccccceec
Q 003465 703 FEAFFGNFGVARLLNSDSSN-----RTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TSD--PHITLTYILD 761 (818)
Q Consensus 703 ~~~ki~DFGla~~~~~~~~~-----~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~~--~~~~~~~~~d 761 (818)
+++||+|||+|+.+...... .....||+.||||| ..+.+ ..+.|+. ... .+....+++.
T Consensus 165 ~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~ 244 (299)
T d1jpaa_ 165 LVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVIN 244 (299)
T ss_dssp CCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHH
T ss_pred CcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 99999999999987644221 23456899999999 22222 2233321 111 1212222222
Q ss_pred ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 762 QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 762 ~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
....+...+.+.++...+.+++..||+.+|++||+|.||++.|+++.
T Consensus 245 ~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l 291 (299)
T d1jpaa_ 245 AIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMI 291 (299)
T ss_dssp HHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence 11111111123344556778899999999999999999999999873
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.2e-19 Score=186.62 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=67.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCCcc-hHHHHhc------------ccCCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHPQE-ILSLFSS------------TSDPHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~~~-~l~~~~~------------~~~~~~ 754 (818)
|+|||||.++++||+|||+|+.+..... ......||++||||| ....+ ..+.|+. ......
T Consensus 138 p~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~ 217 (283)
T d1mqba_ 138 ARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL 217 (283)
T ss_dssp GGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred cceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccC
Confidence 8999999999999999999998754422 234567999999999 22222 2233321 111111
Q ss_pred cc---cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 755 TL---TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 755 ~~---~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
.. .+.+......+. +.++...+.+++.+||+.+|++||+|.||+++|+++.+
T Consensus 218 ~~~~~~~~i~~~~~~~~---~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~ 272 (283)
T d1mqba_ 218 SNHEVMKAINDGFRLPT---PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIR 272 (283)
T ss_dssp CHHHHHHHHHTTCCCCC---CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccCCCCC---chhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhh
Confidence 11 122222222222 33445667789999999999999999999999998743
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=8.5e-20 Score=185.61 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=92.9
Q ss_pred hcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh-------------------------------------
Q 003465 653 DIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA------------------------------------- 691 (818)
Q Consensus 653 ~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~------------------------------------- 691 (818)
...|| |.||+|.+.++..||||.+.... ...++|.+|+
T Consensus 10 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~ 88 (263)
T d1sm2a_ 10 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLS 88 (263)
T ss_dssp EEEEECCSSCCEEEEEETTTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHH
T ss_pred EEEEeeCCCeEEEEEEECCCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHH
Confidence 34566 89999999888999999876543 2346788888
Q ss_pred -----------------------------------cc---ccccccCCCCcccccccccceeccCCCC-Cccccccccce
Q 003465 692 -----------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRY 732 (818)
Q Consensus 692 -----------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy 732 (818)
|+ |+|||+|+++++||+|||+|+....... ......||+.|
T Consensus 89 ~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y 168 (263)
T d1sm2a_ 89 DYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 168 (263)
T ss_dssp HHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC------------------CTTS
T ss_pred HHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCceeecceecCccc
Confidence 22 8999999999999999999998754432 23456799999
Q ss_pred eCCC----CCCcchHHHHhcc----------c--CCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC
Q 003465 733 IAPA----KHPQEILSLFSST----------S--DPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT 796 (818)
Q Consensus 733 ~aPE----~~~~~~l~~~~~~----------~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~ 796 (818)
+||| ...+...+.|+.. . +......+++.....+.....+..+...+.+++..||+.+|++||+
T Consensus 169 ~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps 248 (263)
T d1sm2a_ 169 ASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPA 248 (263)
T ss_dssp CCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred CChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCcC
Confidence 9999 2222233334311 1 1111111121111111110112233456778889999999999999
Q ss_pred hHHHHHHHccCC
Q 003465 797 MQRVSQEFLKFP 808 (818)
Q Consensus 797 m~~V~~~L~~~~ 808 (818)
|+||+++|+++.
T Consensus 249 ~~~il~~L~~i~ 260 (263)
T d1sm2a_ 249 FSRLLRQLAEIA 260 (263)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.4e-19 Score=184.87 Aligned_cols=157 Identities=19% Similarity=0.182 Sum_probs=104.1
Q ss_pred hhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh----------------------------------
Q 003465 650 LISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA---------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~---------------------------------- 691 (818)
|.....|| |.||+|.+.+++.||||++.... ...++|.+|+
T Consensus 15 ~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~~g~ 93 (272)
T d1qpca_ 15 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 93 (272)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCB
T ss_pred eEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCCCCc
Confidence 44445566 89999999888999999876543 2446788888
Q ss_pred --------------------------------------cc---ccccccCCCCcccccccccceeccCCCC-Cccccccc
Q 003465 692 --------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGT 729 (818)
Q Consensus 692 --------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt 729 (818)
|+ |+|||||+++++||+|||+|+.+..... ..+...||
T Consensus 94 L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt 173 (272)
T d1qpca_ 94 LVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFP 173 (272)
T ss_dssp HHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCC
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccCCccccccccCCc
Confidence 33 8999999999999999999998865432 34567899
Q ss_pred cceeCCC---CCCcc-hHHHHhc----------cc--CCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCC
Q 003465 730 YRYIAPA---KHPQE-ILSLFSS----------TS--DPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKS 793 (818)
Q Consensus 730 ~gy~aPE---~~~~~-~l~~~~~----------~~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 793 (818)
++||||| ..+.+ ..+.|+. .. .......+++.....+.....+......+.+++..||+.+|++
T Consensus 174 ~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~ 253 (272)
T d1qpca_ 174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPED 253 (272)
T ss_dssp TTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred ccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhH
Confidence 9999999 22222 2233321 11 1111111111111111111112233445677888999999999
Q ss_pred CCChHHHHHHHccC
Q 003465 794 VPTMQRVSQEFLKF 807 (818)
Q Consensus 794 RP~m~~V~~~L~~~ 807 (818)
||||.||+++|+.+
T Consensus 254 Rpt~~ei~~~L~~~ 267 (272)
T d1qpca_ 254 RPTFDYLRSVLEDF 267 (272)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhhhh
Confidence 99999999999864
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=9.5e-18 Score=166.67 Aligned_cols=209 Identities=25% Similarity=0.371 Sum_probs=118.8
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.+.++..++++.+.+++.. .+..+.+|++|++.+|.++. + +.+.++++|++|++++|.+++..| +..+++|+++
T Consensus 17 ~l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l 90 (227)
T d1h6ua2 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITEL 90 (227)
T ss_dssp HHHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEE
T ss_pred HHHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccc
Confidence 3444455666666666533 34556677777777777763 3 346677777777777777665432 6667777777
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++++|.++.. ..++++++|+.++++++...+. ..+...+.++.+.++.+.+... ..+..+++|++|++++|.++
T Consensus 91 ~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~ 164 (227)
T d1h6ua2 91 ELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS 164 (227)
T ss_dssp ECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred cccccccccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccc
Confidence 7777766532 2456666777777766665432 2344455666666666655432 22445556666666666555
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMS 349 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 349 (818)
... .+.++++|+.|++++|++.+. + .+..+++|++|++++|++++. + .+.++++|+.|+++
T Consensus 165 ~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 165 DLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT 225 (227)
T ss_dssp CCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred cch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence 321 245556666666666655432 2 245555555555555555532 2 14455555555543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.6e-20 Score=208.12 Aligned_cols=109 Identities=26% Similarity=0.315 Sum_probs=61.6
Q ss_pred CCcEEEcCCCCCccc-CCccccCCCcCceecccCcccccC----CCCCCCCCCCCcEEECcCCCCCCC----CccccC-C
Q 003465 102 NLESFRIWYSNISGN-IPSEIGALSKLQILDLSHNNLTGT----IPSKLGNLNNLVELYLSRSNLNGP----IPSTLG-H 171 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~-~ 171 (818)
+|++||++++++++. +...+..++++++|+|++|.++.. +...+..+++|++|||++|.++.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 467777777777653 233455667777777777776532 233445666777777777766421 111221 1
Q ss_pred CCCCCEEEccCCCCCCC----CccCCCCCCCCcEEEcccCcCC
Q 003465 172 LTRLSILDLSSNSLVGP----IPFTLGHLTQLTTLKLFSNQIN 210 (818)
Q Consensus 172 l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 210 (818)
..+|++|+|++|.+++. ++..+..+++|++|++++|.++
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 23566666666665532 2334455566666666666554
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=7.5e-19 Score=180.01 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=99.5
Q ss_pred hhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
+|.....|| |.||+|..++++.||||.+.... ...+.|.+|+
T Consensus 18 ~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~g 96 (285)
T d1fmka3 18 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG 96 (285)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTC
T ss_pred HEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCCC
Confidence 345555666 89999999888899999876543 3456788888
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCC-CCcccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAG 728 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~g 728 (818)
|+ |+|||+|+++++||+|||+|+....+. ...+...|
T Consensus 97 ~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~g 176 (285)
T d1fmka3 97 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 176 (285)
T ss_dssp BHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------C
T ss_pred chhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccc
Confidence 22 899999999999999999999875443 23455789
Q ss_pred ccceeCCC----CCCcchHHHHhc----------cc--CCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCC
Q 003465 729 TYRYIAPA----KHPQEILSLFSS----------TS--DPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPK 792 (818)
Q Consensus 729 t~gy~aPE----~~~~~~l~~~~~----------~~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~ 792 (818)
|++|+||| ...+...+.|+. .. .......++++....+...+.+..+...+.+++.+||+.+|+
T Consensus 177 t~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 256 (285)
T d1fmka3 177 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 256 (285)
T ss_dssp CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred cccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHh
Confidence 99999999 222222233321 11 111111222222111111112333445677888999999999
Q ss_pred CCCChHHHHHHHccC
Q 003465 793 SVPTMQRVSQEFLKF 807 (818)
Q Consensus 793 ~RP~m~~V~~~L~~~ 807 (818)
+||+|.+|+++|+..
T Consensus 257 ~Rps~~~i~~~L~~~ 271 (285)
T d1fmka3 257 ERPTFEYLQAFLEDY 271 (285)
T ss_dssp GSCCHHHHHHHHHTT
T ss_pred HCcCHHHHHHHHhhh
Confidence 999999999999987
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=2.8e-17 Score=163.15 Aligned_cols=203 Identities=26% Similarity=0.365 Sum_probs=138.2
Q ss_pred EEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCC
Q 003465 106 FRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL 185 (818)
Q Consensus 106 L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 185 (818)
+++..+.+++.. .+..+.+|++|++.+|+++. + +.+.++++|++|++++|.+++..| +..+++|+++++++|.+
T Consensus 24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (227)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence 445555555433 34566777777777777774 3 347777777777777777764332 67777777777777776
Q ss_pred CCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccc
Q 003465 186 VGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI 265 (818)
Q Consensus 186 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 265 (818)
+. + ..+.++++|++++++++...+. ..+...+.++.+.++.+.+... ..+..+++|+.|++++|.+... ..+
T Consensus 98 ~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l 169 (227)
T d1h6ua2 98 KN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPL 169 (227)
T ss_dssp SC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred cc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhh
Confidence 63 2 2466777777777777766543 2355667777777777776532 2356677788888888777643 236
Q ss_pred cCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccC
Q 003465 266 GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFS 326 (818)
Q Consensus 266 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 326 (818)
..+++|++|++++|++++ ++ .+.++++|++|++++|++++. + .+.++++|+.|++++
T Consensus 170 ~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 170 ANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp TTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred cccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 777888888888888774 33 367778888888888887754 3 377788888888763
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.2e-18 Score=176.11 Aligned_cols=157 Identities=16% Similarity=0.085 Sum_probs=104.7
Q ss_pred hhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh----------------------------------
Q 003465 650 LISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA---------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~---------------------------------- 691 (818)
|.-...|| |+||+|..++++.||||.++.... ..++|.+|+
T Consensus 6 ~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g 84 (258)
T d1k2pa_ 6 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANG 84 (258)
T ss_dssp CCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTE
T ss_pred CEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCC
Confidence 33445566 899999998889999997765433 346788888
Q ss_pred --------------------------------------cc---ccccccCCCCcccccccccceeccCCCC-Cccccccc
Q 003465 692 --------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGT 729 (818)
Q Consensus 692 --------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt 729 (818)
|+ |+|||+|+++.+||+|||+|+....... ......||
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t 164 (258)
T d1k2pa_ 85 CLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP 164 (258)
T ss_dssp EHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCC
T ss_pred cHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCC
Confidence 22 8999999999999999999997755432 33457799
Q ss_pred cceeCCC----CCCcchHHHHhc----------cc--CCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCC
Q 003465 730 YRYIAPA----KHPQEILSLFSS----------TS--DPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKS 793 (818)
Q Consensus 730 ~gy~aPE----~~~~~~l~~~~~----------~~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 793 (818)
+.|+||| ...+...+.|+. .. +......++......+.....+......+.+++..||+.+|++
T Consensus 165 ~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~ 244 (258)
T d1k2pa_ 165 VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADE 244 (258)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGG
T ss_pred CCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccccHHHHHHHHHHccCCHhH
Confidence 9999999 222222333321 12 2221222222111111111112334456778888999999999
Q ss_pred CCChHHHHHHHccC
Q 003465 794 VPTMQRVSQEFLKF 807 (818)
Q Consensus 794 RP~m~~V~~~L~~~ 807 (818)
||||.+|++.|..|
T Consensus 245 RPt~~eil~~L~di 258 (258)
T d1k2pa_ 245 RPTFKILLSNILDV 258 (258)
T ss_dssp SCCHHHHHHHHHCC
T ss_pred CcCHHHHHHHhhCC
Confidence 99999999999765
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=5.9e-19 Score=183.21 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=73.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCc-chHHHHhc------------ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQ-EILSLFSS------------TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~------------~~~~~~~ 755 (818)
|+|||+|.++++||+|||+|+.+.... ...+..+||+.|+||| ..++ ...+.|+. ..+....
T Consensus 168 p~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~ 247 (301)
T d1lufa_ 168 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA 247 (301)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred ccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCC
Confidence 899999999999999999999775432 2334678999999999 2222 23333321 1112222
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+++.....+...+.+......+.+++..||+.+|++||||.||+++|++|.
T Consensus 248 ~~e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~ 300 (301)
T d1lufa_ 248 HEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC 300 (301)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence 12222221111111123334456778999999999999999999999999874
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1e-20 Score=209.69 Aligned_cols=90 Identities=26% Similarity=0.297 Sum_probs=59.0
Q ss_pred cCCCCCCcEEEcCCCCCcc----cCCccccCCCcCceecccCcccccC----CCCCCC-CCCCCcEEECcCCCCCCC---
Q 003465 97 FSCFPNLESFRIWYSNISG----NIPSEIGALSKLQILDLSHNNLTGT----IPSKLG-NLNNLVELYLSRSNLNGP--- 164 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~-~l~~L~~L~Ls~n~l~~~--- 164 (818)
+..++++++|+|++|.++. .+...+..+++|++|||++|.++.. +...+. ...+|++|+|++|.+++.
T Consensus 23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~ 102 (460)
T d1z7xw1 23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102 (460)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence 4456777888888887763 2445566777888888888877531 222332 234688888888877643
Q ss_pred -CccccCCCCCCCEEEccCCCCC
Q 003465 165 -IPSTLGHLTRLSILDLSSNSLV 186 (818)
Q Consensus 165 -~p~~l~~l~~L~~L~L~~n~l~ 186 (818)
++..+..+++|++|++++|.+.
T Consensus 103 ~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 103 VLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCH
T ss_pred cccchhhccccccccccccccch
Confidence 3455667778888888887765
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=1.4e-18 Score=178.51 Aligned_cols=157 Identities=19% Similarity=0.188 Sum_probs=106.9
Q ss_pred hhhhhcccc----CcEEEEEcC-CCcEEEEEeccccccchhhhhHhhh--------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTK-HGCLVAEYGSEQGRSAFFKSFQNEA-------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~-~g~~vAvK~~~~~~~~~~~~f~~E~-------------------------------- 691 (818)
+|.....|| |+||+|... +|+.||||.++.... ..++|.+|+
T Consensus 18 ~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~ 96 (287)
T d1opja_ 18 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT 96 (287)
T ss_dssp GEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred HeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc-hHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeeccc
Confidence 344455677 899999964 589999998765432 456788888
Q ss_pred -----------------------------------------cc---ccccccCCCCcccccccccceeccCCCC-Ccccc
Q 003465 692 -----------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLI 726 (818)
Q Consensus 692 -----------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~ 726 (818)
|+ |+|||||+++++||+|||+|+....+.. ..+..
T Consensus 97 ~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~ 176 (287)
T d1opja_ 97 YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 176 (287)
T ss_dssp TCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTE
T ss_pred CcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCCCceeeccc
Confidence 22 8999999999999999999998755433 23456
Q ss_pred ccccceeCCC----CCCcchHHHHhcc------------cCCCccc---cceecccCCCcCccchHHHHHHHHHHHHhcc
Q 003465 727 AGTYRYIAPA----KHPQEILSLFSST------------SDPHITL---TYILDQRISPPKKQKIVQDIALASIVALACL 787 (818)
Q Consensus 727 ~gt~gy~aPE----~~~~~~l~~~~~~------------~~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~ 787 (818)
.||+.|+||| ...+...+.|+.. ....... .+++........ +......+.+++..||
T Consensus 177 ~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~l~~li~~cl 253 (287)
T d1opja_ 177 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER---PEGCPEKVYELMRACW 253 (287)
T ss_dssp EECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHT
T ss_pred cccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCC---CccchHHHHHHHHHHc
Confidence 7999999999 2222233334311 1111111 122333332222 2233456778888999
Q ss_pred CCCCCCCCChHHHHHHHccCCC
Q 003465 788 QSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 788 ~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
+.||++||||.||++.|+.+.+
T Consensus 254 ~~dP~~Rps~~ei~~~L~~~~~ 275 (287)
T d1opja_ 254 QWNPSDRPSFAEIHQAFETMFQ 275 (287)
T ss_dssp CSSGGGSCCHHHHHHHHHHTTS
T ss_pred CCCHhHCcCHHHHHHHHHHHHH
Confidence 9999999999999999998843
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=6.3e-17 Score=162.45 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=46.5
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCC-CCCCCCCCCCcEEECcC-CCCCCCCccccCCCCCCCEEE
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTI-PSKLGNLNNLVELYLSR-SNLNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 179 (818)
++++|++++|.++...+..|.++++|++|+|++|.+...+ +..|.+++++++|++.. |.+....+..|.++++|++|+
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~ 109 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence 4566666666665444445566666666666666554433 23455555666655543 344444444555555566666
Q ss_pred ccCCCCC
Q 003465 180 LSSNSLV 186 (818)
Q Consensus 180 L~~n~l~ 186 (818)
+++|.+.
T Consensus 110 l~~~~l~ 116 (242)
T d1xwdc1 110 ISNTGIK 116 (242)
T ss_dssp EESCCCC
T ss_pred cchhhhc
Confidence 6555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9.1e-17 Score=161.24 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=44.7
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCC-ccccCCCCCCCEEEccC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPI-PSTLGHLTRLSILDLSS 182 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~ 182 (818)
++++.++.+++ .+|..+. +++++|+|++|.++...+..|.++++|++|++++|.+...+ +..|.++++++++.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 34455544444 3343321 34555555555554333334455555555555555444322 22344444444444432
Q ss_pred -CCCCCCCccCCCCCCCCcEEEcccCcC
Q 003465 183 -NSLVGPIPFTLGHLTQLTTLKLFSNQI 209 (818)
Q Consensus 183 -n~l~~~~~~~l~~l~~L~~L~L~~n~l 209 (818)
|.+....+..|.++++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l 115 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGI 115 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCC
T ss_pred cccccccccccccccccccccccchhhh
Confidence 233333333344444444444444443
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=6.6e-18 Score=172.32 Aligned_cols=116 Identities=19% Similarity=0.330 Sum_probs=70.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC------CCCcc-hHHHHhc---------ccCC--C
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA------KHPQE-ILSLFSS---------TSDP--H 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE------~~~~~-~l~~~~~---------~~~~--~ 753 (818)
|+|||||+++++||+|||+|+...... ...+..+||++||||| ..+++ ..+.|+. ...+ .
T Consensus 132 p~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~ 211 (276)
T d1uwha_ 132 SNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSN 211 (276)
T ss_dssp GGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred HHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCC
Confidence 899999999999999999999875432 2345678999999999 12222 3334432 1111 1
Q ss_pred cc----ccceecccC-CCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 754 IT----LTYILDQRI-SPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 754 ~~----~~~~~d~~l-~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
.. +...+.... .+.....+..+...+.+++..||+.+|++||||.||+++|+.+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~ 272 (276)
T d1uwha_ 212 INNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLAR 272 (276)
T ss_dssp CCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 11 111111111 111111122344567788889999999999999999999998753
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7.3e-18 Score=175.18 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=73.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC----CCCcchHHHHhc---------ccCC---C
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDP---H 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~---~ 753 (818)
|+|||||+++.+||+|||+++.+..... ..+...||++|+||| ...+...+.|+. ...+ .
T Consensus 158 ~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~ 237 (311)
T d1r0pa_ 158 ARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 237 (311)
T ss_dssp GGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-
T ss_pred HHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCC
Confidence 8999999999999999999998754422 234567999999999 333322333321 1111 1
Q ss_pred ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 754 ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 754 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....++.+....+.....+..+...+.+++..||+.||++||+|.||+++|+++
T Consensus 238 ~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i 291 (311)
T d1r0pa_ 238 VNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 291 (311)
T ss_dssp -----CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 111222221111111111223345677888999999999999999999999988
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=1.9e-16 Score=153.42 Aligned_cols=183 Identities=31% Similarity=0.439 Sum_probs=105.7
Q ss_pred CCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEE
Q 003465 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLK 203 (818)
Q Consensus 124 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 203 (818)
+.++..+.++.+.+++.++ ...+.+|++|++++|.++. + +.+..+++|++|++++|++++..+ ++++++|++|+
T Consensus 17 l~~~i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 90 (199)
T d2omxa2 17 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 90 (199)
T ss_dssp HHHHHHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HHHHHHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccc
Confidence 3344455666666654332 2355667777777777663 2 246667777777777777665332 66677777777
Q ss_pred cccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCC
Q 003465 204 LFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG 283 (818)
Q Consensus 204 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 283 (818)
+++|.+... + .++++++|+.|++++|.+... ..+..+++|+.|++++|.+.. + +.+..+++|++|++.+|++++
T Consensus 91 l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~ 164 (199)
T d2omxa2 91 MNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD 164 (199)
T ss_dssp CCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC
T ss_pred ccccccccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC
Confidence 777766532 2 356666677776666665432 235556666666666666552 2 235556666666666666653
Q ss_pred cCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCee
Q 003465 284 PIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTL 322 (818)
Q Consensus 284 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 322 (818)
. + .++++++|++|++++|++++ ++ .++.+++|++|
T Consensus 165 l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 165 L-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp C-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred C-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence 2 2 25556666666666666553 22 34555555543
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=7.9e-18 Score=175.02 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=75.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHh------------cccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFS------------STSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~------------~~~~~~~~ 755 (818)
|+|||+|+++++||+|||+|+.+..... ..+...||+.|+||| ...+...+.|+ ...+....
T Consensus 161 ~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~ 240 (308)
T d1p4oa_ 161 ARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS 240 (308)
T ss_dssp GGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC
T ss_pred CCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999998754432 234567999999999 22222222332 11222222
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
..++++....+...+.+..+...+.+++.+||+.+|++||+|.+|+++|++..+
T Consensus 241 ~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~ 294 (308)
T d1p4oa_ 241 NEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 294 (308)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred HHHHHHHHHhCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 222222111111111123344567888999999999999999999999998744
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=2.9e-16 Score=153.45 Aligned_cols=181 Identities=25% Similarity=0.356 Sum_probs=100.9
Q ss_pred eecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCc
Q 003465 129 ILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ 208 (818)
Q Consensus 129 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 208 (818)
..++..+.+++.++. ..+.+|++|++++|.+++. + .+..+++|++|++++|.+++.. .++.+++|++|++++|+
T Consensus 28 ~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~ 101 (210)
T d1h6ta2 28 KDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK 101 (210)
T ss_dssp HHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred HHHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc
Confidence 334444444433321 2344555666666655532 2 2555566666666666555432 24555666666666666
Q ss_pred CCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcc
Q 003465 209 INGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPST 288 (818)
Q Consensus 209 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 288 (818)
+++ ++ .+.++++|+.|++++|.+.. ...+..++.|+.+++++|.+++. ..+..+++|+++++++|++++. + .
T Consensus 102 i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~ 173 (210)
T d1h6ta2 102 VKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-P 173 (210)
T ss_dssp CCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-G
T ss_pred ccc-cc-cccccccccccccccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc-c-c
Confidence 553 22 35556666666666665542 23455566666666666666532 2345566677777777766642 2 2
Q ss_pred cCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeecc
Q 003465 289 LGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLF 325 (818)
Q Consensus 289 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 325 (818)
+.++++|++|++++|.++. ++ .+..+++|++|+|+
T Consensus 174 l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 174 LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 5666777777777777653 33 46667777777765
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=9.7e-18 Score=171.78 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=73.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCCcc-hHHHHh------------cccCCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHPQE-ILSLFS------------STSDPHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~~~-~l~~~~------------~~~~~~~ 754 (818)
|+|||+|+++++||+|||+|+.+..... ..+...||+.|+||| ..+.+ ..+.|+ ...+...
T Consensus 137 p~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~ 216 (285)
T d1u59a_ 137 ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM 216 (285)
T ss_dssp GGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred hhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCC
Confidence 8999999999999999999998754422 234567999999999 12222 222232 1112222
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++......+...+.+..+...+.+++..||+.+|++||+|.+|++.|+.+
T Consensus 217 ~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~ 269 (285)
T d1u59a_ 217 KGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 269 (285)
T ss_dssp CTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 22222221111111112333445677888999999999999999999999876
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=5.4e-16 Score=151.47 Aligned_cols=166 Identities=25% Similarity=0.363 Sum_probs=104.1
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.+.+|++|++++|.++.. + .+..+++|++|++++|++++. + .++.+++|++|++++|++++ ++ .+..+++|+.|
T Consensus 44 ~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L 117 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (210)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred HhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccc
Confidence 455666666666666532 2 356666667777776666642 2 25666667777777666663 33 45666677777
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++++|.+.. ...+..+++|+.+++++|.+++ +..+..+++|+.+++++|++++. + .+..+++|++|++++|.++
T Consensus 118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~ 191 (210)
T d1h6ta2 118 SLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS 191 (210)
T ss_dssp ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred ccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC
Confidence 777666653 2346666777777777776653 23455667777777777777643 2 3666777777777777776
Q ss_pred CcCCcccCCCCCCCEEEccC
Q 003465 283 GPIPSTLGRLTSLSDLDLSH 302 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~ 302 (818)
. ++ .+.++++|++|+|++
T Consensus 192 ~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 192 D-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp B-CG-GGTTCTTCSEEEEEE
T ss_pred C-Ch-hhcCCCCCCEEEccC
Confidence 3 33 467777777777753
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.66 E-value=1.1e-16 Score=154.10 Aligned_cols=127 Identities=26% Similarity=0.371 Sum_probs=65.6
Q ss_pred eecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCC-ccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccC
Q 003465 129 ILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPI-PSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207 (818)
Q Consensus 129 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 207 (818)
.++.++++++ .+|..+. +++++|+|++|+|+..+ +..|.++++|++|+|++|.+....+..+..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 4444555554 3443332 34555555555554322 334455555555555555555555555555555555555555
Q ss_pred cCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 208 QINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 208 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
+++...+..|.++++|++|+|++|+++...+..|..+++|++|+|++|.+.
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 555544555555555555555555555544555555555555555555544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=1e-15 Score=148.11 Aligned_cols=162 Identities=30% Similarity=0.457 Sum_probs=85.8
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.+++|++|++++|.++. + +.+..+++|++|++++|++++. + .++++++|++|++++|.+... + .+.++++|++|
T Consensus 38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L 111 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL 111 (199)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-c-cccCCcccccccccccccccc-c-ccccccccccc
Confidence 34455555555555542 2 2345555555555555555532 2 155555555555555555432 2 24555556666
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++++|.+... ..+..+++|+.|++++|++.. .+.+..+++|+.|++.+|.+++. ..+..+++|++|++++|+++
T Consensus 112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS 185 (199)
T ss_dssp ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred cccccccccc--cccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence 6555555432 234555666666666665542 12355556666666666666532 23556666666666666665
Q ss_pred CcCCcccCCCCCCCEE
Q 003465 283 GPIPSTLGRLTSLSDL 298 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L 298 (818)
+ ++ .+..+++|+.|
T Consensus 186 ~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 186 D-IS-VLAKLTNLESL 199 (199)
T ss_dssp C-CG-GGGGCTTCSEE
T ss_pred C-Cc-cccCCCCCCcC
Confidence 3 22 35556666554
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.6e-17 Score=169.69 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=70.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCCcc-hHHHHh----------ccc--CCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHPQE-ILSLFS----------STS--DPHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~~~-~l~~~~----------~~~--~~~~ 754 (818)
|+|||||.++.+||+|||+|+.+..... ......||++||||| ..+.+ ..+.|+ ... +...
T Consensus 135 p~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~ 214 (277)
T d1xbba_ 135 ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM 214 (277)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred chhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCC
Confidence 8999999999999999999998754432 234567999999999 22222 222232 112 2221
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++......+...+.+..+...+.+++..||+.+|++||+|++|+++|+..
T Consensus 215 ~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~ 267 (277)
T d1xbba_ 215 KGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 267 (277)
T ss_dssp CHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCH
Confidence 11222111111111112333445677888999999999999999999988754
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.65 E-value=2.7e-16 Score=151.30 Aligned_cols=131 Identities=24% Similarity=0.332 Sum_probs=96.7
Q ss_pred CeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccc-cCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccC
Q 003465 320 TTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG-PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNS 398 (818)
Q Consensus 320 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 398 (818)
+.++.++++++ .+|..+. +++++|+|++|+|++ ..+..|..+++|+.|+|++|.+....+..+..+++|++|+|++
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 34555666655 4554432 567777777777764 3345667777888888888888777777788888888888888
Q ss_pred CcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccC
Q 003465 399 NKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT 453 (818)
Q Consensus 399 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 453 (818)
|+++...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++....
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~ 142 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence 8888777777888888888888888888777777888888888888888876553
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3e-17 Score=170.20 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=67.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------c--cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------T--SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~--~~~~~~ 755 (818)
|+|||||+++++||+|||+|+....... ..+..+||++|+||| ...+...+.|+. . .+....
T Consensus 162 p~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~ 241 (299)
T d1ywna1 162 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 241 (299)
T ss_dssp GGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred ccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999997754432 345678999999999 222223333321 1 111111
Q ss_pred ccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+ .+........ +......+.+++..||+.||++||||.||+++|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~i 294 (299)
T d1ywna1 242 IDEEFCRRLKEGTRMRA---PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 294 (299)
T ss_dssp CSHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCC---CccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 111 1111111111 222344567888899999999999999999999876
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.9e-17 Score=173.03 Aligned_cols=111 Identities=17% Similarity=0.214 Sum_probs=70.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCCcc-hHHHHhc----------c--cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------T--SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~--~~~~~~ 755 (818)
|+|||+|.++++||+|||+|+.+..... .....+||++|+||| ..+.+ ..+.|+. . .+....
T Consensus 139 p~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~ 218 (317)
T d1xkka_ 139 ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP 218 (317)
T ss_dssp GGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred hhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC
Confidence 8999999999999999999998755432 234567999999999 22222 3333421 1 111111
Q ss_pred ccce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++ +....... .+..+...+.+++..||+.+|++||+|.||++.|+.+
T Consensus 219 ~~~~~~~i~~~~~~~---~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~ 270 (317)
T d1xkka_ 219 ASEISSILEKGERLP---QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 270 (317)
T ss_dssp GGGHHHHHHHTCCCC---CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC---CCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHH
Confidence 1222 22222111 2333455677888999999999999999999998876
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2e-17 Score=168.08 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=62.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc-----------ccCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS-----------TSDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~-----------~~~~~~~~~~ 758 (818)
|+|||+|+++.+||+|||+|+.+..+....+..+||++||||| ..+++ ..+.|+. ..+......+
T Consensus 142 p~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~ 221 (269)
T d2java1 142 PANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE 221 (269)
T ss_dssp GGGEEECTTSCEEECCHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred hhhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHH
Confidence 8999999999999999999998866555556788999999999 33333 4445532 1122211122
Q ss_pred e----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 I----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+ .+...... +......+.+++..|++.||++||++.|+++
T Consensus 222 ~~~~i~~~~~~~~----~~~~s~~l~~li~~~L~~dp~~Rps~~ell~ 265 (269)
T d2java1 222 LAGKIREGKFRRI----PYRYSDELNEIITRMLNLKDYHRPSVEEILE 265 (269)
T ss_dssp HHHHHHHTCCCCC----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHcCCCCCC----CcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 2 22222111 1122234566778999999999999999875
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=5.3e-17 Score=168.16 Aligned_cols=115 Identities=15% Similarity=0.234 Sum_probs=73.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC--CC--------CcchHHHHhcc---------c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA--KH--------PQEILSLFSST---------S 750 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE--~~--------~~~~l~~~~~~---------~ 750 (818)
|+|||+|+++++||+|||+++....... .....+||++||||| .. .+...+.|+.+ .
T Consensus 136 p~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~ 215 (303)
T d1vjya_ 136 SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRC 215 (303)
T ss_dssp GGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred ccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCC
Confidence 8999999999999999999998855432 234578999999999 11 11123334311 1
Q ss_pred CCCc-------ccc--------------ceecccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 DPHI-------TLT--------------YILDQRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~~~~-------~~~--------------~~~d~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+.. ... .+.++.+++... ....+.+..+.+++..||+.||++||||.||+++|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i 295 (303)
T d1vjya_ 216 SIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295 (303)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence 0000 000 111222222110 11334566788899999999999999999999999987
Q ss_pred C
Q 003465 808 P 808 (818)
Q Consensus 808 ~ 808 (818)
.
T Consensus 296 ~ 296 (303)
T d1vjya_ 296 S 296 (303)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.6e-16 Score=163.07 Aligned_cols=152 Identities=18% Similarity=0.138 Sum_probs=100.4
Q ss_pred hhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 650 LISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
|.....|| |+||+|.. .+|+.||||.+........+.|.+|+
T Consensus 22 Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~g 101 (293)
T d1yhwa1 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAG 101 (293)
T ss_dssp BCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred cEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCC
Confidence 44445566 89999985 57999999976654444456688887
Q ss_pred -------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccccccccc
Q 003465 692 -------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYR 731 (818)
Q Consensus 692 -------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~g 731 (818)
|+ |+|||++.++++||+|||+|+.+..+.......+||+.
T Consensus 102 g~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~ 181 (293)
T d1yhwa1 102 GSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPY 181 (293)
T ss_dssp CBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGG
T ss_pred CcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccccccccccccCCC
Confidence 33 89999999999999999999988666555667789999
Q ss_pred eeCCC---CCCcc-hHHHHhcc---------c--CCCccccceecccC---CCcCccchHHHHHHHHHHHHhccCCCCCC
Q 003465 732 YIAPA---KHPQE-ILSLFSST---------S--DPHITLTYILDQRI---SPPKKQKIVQDIALASIVALACLQSKPKS 793 (818)
Q Consensus 732 y~aPE---~~~~~-~l~~~~~~---------~--~~~~~~~~~~d~~l---~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 793 (818)
|+||| ..+++ ..+.|+.+ . +......+.+.... .... ..+......+.++...|++.||++
T Consensus 182 Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~ 260 (293)
T d1yhwa1 182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPEL-QNPEKLSAIFRDFLNRCLDMDVEK 260 (293)
T ss_dssp GCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCC-SSGGGSCHHHHHHHHHHTCSSTTT
T ss_pred ccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCC-CCcccCCHHHHHHHHHHccCChhH
Confidence 99999 33333 44555421 1 11111111111100 0000 111222234556777999999999
Q ss_pred CCChHHHHH
Q 003465 794 VPTMQRVSQ 802 (818)
Q Consensus 794 RP~m~~V~~ 802 (818)
|||+.|+++
T Consensus 261 R~s~~eil~ 269 (293)
T d1yhwa1 261 RGSAKELLQ 269 (293)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999999875
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.5e-16 Score=160.71 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=66.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc----------ccC--CCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSD--PHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~--~~~~~~ 757 (818)
|+|||+|.++++|++|||+++..... .....||..|+||| ...+...+.|+. ... ......
T Consensus 131 p~Nil~~~~~~~kl~dfg~s~~~~~~---~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~ 207 (262)
T d1byga_ 131 ARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK 207 (262)
T ss_dssp GGGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG
T ss_pred hHhheecCCCCEeecccccceecCCC---CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHH
Confidence 89999999999999999999976432 23456899999999 222222233321 111 112222
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
++++....+...+.+......+.+++..||+.||++||||.+|+++|++++
T Consensus 208 ~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~ 258 (262)
T d1byga_ 208 DVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK 258 (262)
T ss_dssp GHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence 333322221111223333456677888999999999999999999999874
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1e-16 Score=163.58 Aligned_cols=114 Identities=11% Similarity=0.131 Sum_probs=62.8
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC---CCCcc-hHHHHhc----------cc--CCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TS--DPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~--~~~~~~ 756 (818)
|+||++|+++++||+|||+|+.+.... ..++...||+.|+||| ..+.+ ..+.|+. .. +.....
T Consensus 136 p~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~ 215 (273)
T d1mp8a_ 136 ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN 215 (273)
T ss_dssp GGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred hhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCH
Confidence 899999999999999999999875432 2345678999999999 22222 2233321 11 112222
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.++......+...+.+......+.+++..||+.+|++||||.||++.|+.+
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i 266 (273)
T d1mp8a_ 216 NDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 266 (273)
T ss_dssp GGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 222222112211122333445677888899999999999999999999876
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2e-16 Score=160.42 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=95.3
Q ss_pred hhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc-cchhhhhHhhh-------------------------------
Q 003465 649 DLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR-SAFFKSFQNEA------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~-~~~~~~f~~E~------------------------------- 691 (818)
+|.....|| |+||+|.. .+|+.||||++.... ....+.|.+|+
T Consensus 6 dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~ 85 (271)
T d1nvra_ 6 DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYC 85 (271)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred ceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEecc
Confidence 454455676 89999995 569999999765432 22345688887
Q ss_pred ----------------------------------------cc---ccccccCCCCcccccccccceeccCCC--CCcccc
Q 003465 692 ----------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLI 726 (818)
Q Consensus 692 ----------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~ 726 (818)
|+ |+|||+|+++++||+|||+|+.+.... ...+..
T Consensus 86 ~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~ 165 (271)
T d1nvra_ 86 SGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKM 165 (271)
T ss_dssp TTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCC
T ss_pred CCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccce
Confidence 22 899999999999999999999875432 234567
Q ss_pred ccccceeCCC---CCCcc--hHHHHhcc---------cCCC--cc-cc----ceecccCCCcCccchHHHHHHHHHHHHh
Q 003465 727 AGTYRYIAPA---KHPQE--ILSLFSST---------SDPH--IT-LT----YILDQRISPPKKQKIVQDIALASIVALA 785 (818)
Q Consensus 727 ~gt~gy~aPE---~~~~~--~l~~~~~~---------~~~~--~~-~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~ 785 (818)
+||+.||||| ..+.+ ..+.|+.+ ..+. .. .. .+......... .......+.++...
T Consensus 166 ~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~li~~ 242 (271)
T d1nvra_ 166 CGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP---WKKIDSAPLALLHK 242 (271)
T ss_dssp CSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTT---GGGSCHHHHHHHHH
T ss_pred eeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCc---cccCCHHHHHHHHH
Confidence 8999999999 33332 34556421 1111 11 00 01111111111 11112344567779
Q ss_pred ccCCCCCCCCChHHHHH
Q 003465 786 CLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 786 C~~~~p~~RP~m~~V~~ 802 (818)
|++.||++|||+.||++
T Consensus 243 ~L~~dP~~R~t~~eil~ 259 (271)
T d1nvra_ 243 ILVENPSARITIPDIKK 259 (271)
T ss_dssp HSCSSTTTSCCHHHHTT
T ss_pred HcCCChhHCcCHHHHhc
Confidence 99999999999999864
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.4e-16 Score=163.33 Aligned_cols=153 Identities=16% Similarity=0.116 Sum_probs=99.8
Q ss_pred hhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 650 LISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
|.....|| |.||+|.. .+|+.||||.+........+.|.+|+
T Consensus 14 Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~ 93 (288)
T d2jfla1 14 WEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG 93 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred eEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCC
Confidence 33344566 89999995 56999999987666555667888888
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGT 729 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt 729 (818)
|+ |+|||++.++++||+|||+|+............+||
T Consensus 94 g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt 173 (288)
T d2jfla1 94 GAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGT 173 (288)
T ss_dssp EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSC
T ss_pred CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCcccccccccc
Confidence 22 899999999999999999998764432233457899
Q ss_pred cceeCCC--------CCCcc-hHHHHhc-----------ccCCCccccceecccCCCc--CccchHHHHHHHHHHHHhcc
Q 003465 730 YRYIAPA--------KHPQE-ILSLFSS-----------TSDPHITLTYILDQRISPP--KKQKIVQDIALASIVALACL 787 (818)
Q Consensus 730 ~gy~aPE--------~~~~~-~l~~~~~-----------~~~~~~~~~~~~d~~l~~~--~~~~~~~~~~~~~~la~~C~ 787 (818)
+.||||| ..+++ ..+.|+. ..+......+++....... ....+......+.++...|+
T Consensus 174 ~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L 253 (288)
T d2jfla1 174 PYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCL 253 (288)
T ss_dssp CTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHS
T ss_pred cccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHc
Confidence 9999999 12222 3445542 1122222222221111110 00112223345566778999
Q ss_pred CCCCCCCCChHHHHH
Q 003465 788 QSKPKSVPTMQRVSQ 802 (818)
Q Consensus 788 ~~~p~~RP~m~~V~~ 802 (818)
+.||++|||+.|+++
T Consensus 254 ~~dp~~R~t~~ell~ 268 (288)
T d2jfla1 254 EKNVDARWTTSQLLQ 268 (288)
T ss_dssp CSSTTTSCCHHHHTT
T ss_pred cCChhHCcCHHHHhc
Confidence 999999999999875
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.3e-16 Score=165.06 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=72.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||+|.++++||+|||+|+........ .+...||++||||| ...+...+.|+. ...+ ...
T Consensus 192 p~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~ 271 (325)
T d1rjba_ 192 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 271 (325)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCC
Confidence 89999999999999999999987654432 34577999999999 222222333321 1111 111
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHc
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFL 805 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~ 805 (818)
+.+++........ +..+...+.+++..||+.+|++||||.||+++|.
T Consensus 272 ~~~~~~~~~~~~~~~~~---p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~ 322 (325)
T d1rjba_ 272 VDANFYKLIQNGFKMDQ---PFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 322 (325)
T ss_dssp CSHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCC---CCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence 1122223222222 2233456677888999999999999999999985
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.9e-16 Score=158.65 Aligned_cols=106 Identities=21% Similarity=0.166 Sum_probs=66.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc-----------ccCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS-----------TSDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~-----------~~~~~~~~~~ 758 (818)
|+|||+|+++++||+|||+|+..... .....+||+.||||| ..+.+ ..+.|+. ..+......+
T Consensus 134 p~Nill~~~~~~kl~DFG~a~~~~~~--~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~ 211 (263)
T d2j4za1 134 PENLLLGSAGELKIADFGWSVHAPSS--RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE 211 (263)
T ss_dssp GGGEEECTTSCEEECCCCSCSCCCCC--CCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred cccceecCCCCEeecccceeeecCCC--cccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHH
Confidence 99999999999999999999876433 234578999999999 33333 3444542 1122222222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+......... ..+......+.++...|++.||++|||+.||++
T Consensus 212 ~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~ 254 (263)
T d2j4za1 212 TYKRISRVEF-TFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 254 (263)
T ss_dssp HHHHHHTTCC-CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHcCCC-CCCccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence 2221111111 011112234556777999999999999999975
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.9e-16 Score=161.17 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=68.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCCcc-hHHHHh----------cccCC--Cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHPQE-ILSLFS----------STSDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~~~-~l~~~~----------~~~~~--~~ 754 (818)
|+|||||.++++||+|||+++.+..... ..+...||++|+||| ..+.+ ..+.|+ ....+ ..
T Consensus 139 p~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~ 218 (273)
T d1u46a_ 139 ARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL 218 (273)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred HHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc
Confidence 8999999999999999999998755432 234567899999999 22222 222332 11111 11
Q ss_pred cccce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++ .......+. +......+.+++..||+.+|++||||.||++.|+++
T Consensus 219 ~~~~~~~~i~~~~~~~~~---~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~ 272 (273)
T d1u46a_ 219 NGSQILHKIDKEGERLPR---PEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 272 (273)
T ss_dssp CHHHHHHHHHTSCCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCC---cccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 11122 112121111 223334567888899999999999999999999864
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.8e-16 Score=163.32 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=70.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc------------ccCCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS------------TSDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~------------~~~~~~~~~ 757 (818)
|+|||+|.++.+||+|||+|+...... ......||..|+||| ..+.+ ..+.|+. ..+......
T Consensus 155 p~NIL~~~~~~~kl~DfG~a~~~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~ 233 (309)
T d1fvra_ 155 ARNILVGENYVAKIADFGLSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA 233 (309)
T ss_dssp GGGEEECGGGCEEECCTTCEESSCEEC-CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH
T ss_pred cceEEEcCCCceEEccccccccccccc-cccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHH
Confidence 899999999999999999998764332 223457999999999 22222 2333321 112222222
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
++.+....+...+.+......+.+++.+||+.+|++||+|.||++.|+++
T Consensus 234 ~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i 283 (309)
T d1fvra_ 234 ELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 283 (309)
T ss_dssp HHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 22221111111111223345666788899999999999999999999887
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.6e-16 Score=159.17 Aligned_cols=111 Identities=15% Similarity=0.221 Sum_probs=74.0
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCCcc-hHHHHhc------------ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHPQE-ILSLFSS------------TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~~~-~l~~~~~------------~~~~~~~ 755 (818)
|+|||+|.++.+||+|||+++....... .....+||++|+||| ..+++ ..+.|+. ..+....
T Consensus 163 p~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~ 242 (299)
T d1fgka_ 163 ARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 242 (299)
T ss_dssp GGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred ccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCC
Confidence 8999999999999999999998865432 235678999999999 22222 2233321 1122222
Q ss_pred ccce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++ +........ +......+.+++.+|++.+|++||||.||++.|+++
T Consensus 243 ~~~~~~~i~~~~~~~~---p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i 294 (299)
T d1fgka_ 243 VEELFKLLKEGHRMDK---PSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 294 (299)
T ss_dssp HHHHHHHHHTTCCCCC---CSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCC---CccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence 2222 222222221 222334567888899999999999999999999887
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=6.6e-16 Score=158.08 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=64.3
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~ 756 (818)
|+|||+|+++.+||+|||+|+.+.... ...+..+||++||||| ..+++ ..+.|+.+ .+.....
T Consensus 136 p~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~ 215 (288)
T d1uu3a_ 136 PENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 215 (288)
T ss_dssp GGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred ccccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCH
Confidence 899999999999999999999885442 2345678999999999 33333 44555421 1211222
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHH
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVS 801 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~ 801 (818)
.++....+.... ..+......+.++...|++.||++|||+.|+.
T Consensus 216 ~~~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~ 259 (288)
T d1uu3a_ 216 YLIFQKIIKLEY-DFPEKFFPKARDLVEKLLVLDATKRLGCEEME 259 (288)
T ss_dssp HHHHHHHHTTCC-CCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGT
T ss_pred HHHHHHHHcCCC-CCCccCCHHHHHHHHHHccCCHhHCcCHHHHc
Confidence 222221111111 01111223455677799999999999999863
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=1e-15 Score=158.33 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=95.7
Q ss_pred hhhhhcccc----CcEEEEEc-CCCcEEEEEecccccc---chhhhhHhhh-----------------------------
Q 003465 649 DLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRS---AFFKSFQNEA----------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~---~~~~~f~~E~----------------------------- 691 (818)
.|.....|| |.||+|.. .+|+.||||.+..... ...+.|.+|+
T Consensus 16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E 95 (309)
T d1u5ra_ 16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME 95 (309)
T ss_dssp HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence 466666777 89999984 6799999997654332 2335688887
Q ss_pred ------------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCcccc
Q 003465 692 ------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLI 726 (818)
Q Consensus 692 ------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~ 726 (818)
|+ |+|||+|+++++||+|||+|+.... ....
T Consensus 96 ~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~----~~~~ 171 (309)
T d1u5ra_ 96 YCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP----ANSF 171 (309)
T ss_dssp CCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS----BCCC
T ss_pred ecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCC----CCcc
Confidence 32 8999999999999999999987543 2345
Q ss_pred ccccceeCCC------CCCcc-hHHHHhcc-----------cCCCccccc----eecccCCCcCccchHHHHHHHHHHHH
Q 003465 727 AGTYRYIAPA------KHPQE-ILSLFSST-----------SDPHITLTY----ILDQRISPPKKQKIVQDIALASIVAL 784 (818)
Q Consensus 727 ~gt~gy~aPE------~~~~~-~l~~~~~~-----------~~~~~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~ 784 (818)
+||++||||| ..+++ ..+.|+.+ .+.+....+ +......... +......+.+++.
T Consensus 172 ~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~---~~~~s~~~~~li~ 248 (309)
T d1u5ra_ 172 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQ---SGHWSEYFRNFVD 248 (309)
T ss_dssp CSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCS---CTTSCHHHHHHHH
T ss_pred ccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCC---CCCCCHHHHHHHH
Confidence 7999999999 12232 44555421 111111111 1111111111 1112234556777
Q ss_pred hccCCCCCCCCChHHHHH
Q 003465 785 ACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 785 ~C~~~~p~~RP~m~~V~~ 802 (818)
.|++.||++|||+.|+++
T Consensus 249 ~~L~~dP~~Rpt~~ell~ 266 (309)
T d1u5ra_ 249 SCLQKIPQDRPTSEVLLK 266 (309)
T ss_dssp HHTCSSGGGSCCHHHHTT
T ss_pred HHCcCChhHCcCHHHHHh
Confidence 999999999999999875
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.3e-15 Score=158.26 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=74.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~--~~~~~ 755 (818)
|+|||+|.++.+|++|||+++....... ..+..+||+.|+||| ...+...+.|+. .. .....
T Consensus 173 p~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~ 252 (311)
T d1t46a_ 173 ARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP 252 (311)
T ss_dssp GGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred cccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999998765432 234678999999999 222223333431 11 11111
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.++++....... +......+.+++..||+.||++||+|.||+++|+++
T Consensus 253 ~~~~~~~~i~~~~~~~~---~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~ 305 (311)
T d1t46a_ 253 VDSKFYKMIKEGFRMLS---PEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305 (311)
T ss_dssp SSHHHHHHHHHTCCCCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCC---cccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence 1223333333222 222334567788899999999999999999999875
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.2e-15 Score=157.26 Aligned_cols=87 Identities=25% Similarity=0.213 Sum_probs=65.5
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc-cchhhhhHhhh------------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR-SAFFKSFQNEA------------------------------ 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~-~~~~~~f~~E~------------------------------ 691 (818)
++|.....|| |+||+|.. .+|+.||||.++... ....+++.+|+
T Consensus 6 d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy 85 (322)
T d1s9ja_ 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 85 (322)
T ss_dssp GGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred cCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence 4566666777 89999995 579999999765432 22345688887
Q ss_pred ------------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCcccc
Q 003465 692 ------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLI 726 (818)
Q Consensus 692 ------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~ 726 (818)
|+ |+|||+++++++||+|||+|+.+.... .+..
T Consensus 86 ~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~--~~~~ 163 (322)
T d1s9ja_ 86 MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM--ANSF 163 (322)
T ss_dssp CTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHT--C---
T ss_pred CCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCCc--cccc
Confidence 22 899999999999999999999764332 3356
Q ss_pred ccccceeCCC
Q 003465 727 AGTYRYIAPA 736 (818)
Q Consensus 727 ~gt~gy~aPE 736 (818)
+||++|+|||
T Consensus 164 ~GT~~Y~APE 173 (322)
T d1s9ja_ 164 VGTRSYMSPE 173 (322)
T ss_dssp CCSSCCCCHH
T ss_pred cCCccccCch
Confidence 8999999999
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.6e-15 Score=156.96 Aligned_cols=154 Identities=14% Similarity=0.061 Sum_probs=98.0
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc---cchhhhhHhhh----------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR---SAFFKSFQNEA---------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~---~~~~~~f~~E~---------------------------- 691 (818)
++|.....|| |.||+|.. .+|+.||||.+.... ....+.+.+|+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ 84 (337)
T d1o6la_ 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccce
Confidence 3566666777 89999995 679999999765432 12345577776
Q ss_pred -------------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccc
Q 003465 692 -------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||+|+++.+||+|||+|+...........
T Consensus 85 ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~ 164 (337)
T d1o6la_ 85 EYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT 164 (337)
T ss_dssp ECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCC
T ss_pred eccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCCccccc
Confidence 22 89999999999999999999977555455566
Q ss_pred cccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCC
Q 003465 726 IAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSK 790 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~ 790 (818)
.+||+.|+||| ..+++ ..+.|+.+ .+......++......... ..+......+.++...|++.|
T Consensus 165 ~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~-~~p~~~s~~~~dli~~~L~~d 243 (337)
T d1o6la_ 165 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEI-RFPRTLSPEAKSLLAGLLKKD 243 (337)
T ss_dssp CEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSS
T ss_pred ceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCC-CCCccCCHHHHHHHHhhccCC
Confidence 88999999999 33333 44555421 1111111111111111110 001111223456777999999
Q ss_pred CCCCCC-----hHHHHH
Q 003465 791 PKSVPT-----MQRVSQ 802 (818)
Q Consensus 791 p~~RP~-----m~~V~~ 802 (818)
|++||+ ..|+.+
T Consensus 244 P~~R~~~~~~~~~eil~ 260 (337)
T d1o6la_ 244 PKQRLGGGPSDAKEVME 260 (337)
T ss_dssp TTTSTTCSTTTHHHHHT
T ss_pred chhhcccccccHHHHHc
Confidence 999995 667664
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.2e-15 Score=149.85 Aligned_cols=107 Identities=15% Similarity=0.222 Sum_probs=65.0
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC--CCCcc-hHHHHhc---------cc--CCCc-ccc
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--KHPQE-ILSLFSS---------TS--DPHI-TLT 757 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~~~~~-~l~~~~~---------~~--~~~~-~~~ 757 (818)
|+|||++ +++.+||+|||+|+.... ......+||+.||||| +.+.+ ..+.|+. .. +.+. ...
T Consensus 142 p~NILl~~~~~~~Kl~DFGla~~~~~--~~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~ 219 (270)
T d1t4ha_ 142 CDNIFITGPTGSVKIGDLGLATLKRA--SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAA 219 (270)
T ss_dssp GGGEEESSTTSCEEECCTTGGGGCCT--TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH
T ss_pred hhhceeeCCCCCEEEeecCcceeccC--CccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCcccHH
Confidence 8999996 578999999999986432 2345678999999999 22222 4444532 11 1111 111
Q ss_pred ceecccCCCcC-ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPK-KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~-~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
++......+.. ...+......+.+++..|++.||++|||+.|+++
T Consensus 220 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~ 265 (270)
T d1t4ha_ 220 QIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 265 (270)
T ss_dssp HHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence 11111111111 0011122334667888999999999999999875
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1e-15 Score=156.98 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=65.9
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCC-CccccCCCCCCCEEEccC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGP-IPSTLGHLTRLSILDLSS 182 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~ 182 (818)
++|||+++.+.......+.. ..+..+.++...+..... ......+|++||+++|.++.. +...+.++++|++|+|++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 35677666654222211111 123455555544442222 223445677777777665532 233456667777777777
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccC-cCCcc-CCccccCCCCCCEEEccCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSN-QINGC-IPLDFGNLRHLKEVDLSGN 231 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n 231 (818)
|.+++..+..+..+++|++|++++| .++.. +...+.++++|++|+++++
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c 131 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence 7666555556666677777777664 34321 1112234566666666654
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=7.2e-15 Score=152.49 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=65.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc-----------ccCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS-----------TSDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~-----------~~~~~~~~~~ 758 (818)
|+|||+|+++.+||+|||+|+..... .+..+||++||||| ..+++ ..+.|+. ..+......+
T Consensus 132 p~NILl~~~g~vkL~DFG~a~~~~~~---~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~ 208 (316)
T d1fota_ 132 PENILLDKNGHIKITDFGFAKYVPDV---TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK 208 (316)
T ss_dssp GGGEEECTTSCEEECCCSSCEECSSC---BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred chheeEcCCCCEEEecCccceEeccc---cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHH
Confidence 89999999999999999999987533 34578999999999 33333 3444532 1122222222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+....+.+.. ..+......+.++...|++.+|++|| ++.++++
T Consensus 209 ~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~ 256 (316)
T d1fota_ 209 TYEKILNAEL-RFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 256 (316)
T ss_dssp HHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHcCCC-CCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence 2221111111 00111123455677799999999996 8888875
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.47 E-value=8.6e-15 Score=153.99 Aligned_cols=153 Identities=14% Similarity=0.064 Sum_probs=99.7
Q ss_pred hhhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh--------------------------------
Q 003465 649 DLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA-------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~-------------------------------- 691 (818)
+|.....|| |.||+|.. .+|+.||||++........+.|.+|+
T Consensus 27 ~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~ 106 (350)
T d1koaa2 27 HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMS 106 (350)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCC
T ss_pred CeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCC
Confidence 455556677 89999985 57999999977665544556688887
Q ss_pred ----------------------------------------cc---ccccccC--CCCcccccccccceeccCCCCCcccc
Q 003465 692 ----------------------------------------HV---FNNILLN--SEFEAFFGNFGVARLLNSDSSNRTLI 726 (818)
Q Consensus 692 ----------------------------------------h~---~~NILLd--~~~~~ki~DFGla~~~~~~~~~~~~~ 726 (818)
|+ |+|||++ .++.+||+|||+|+.+.... .....
T Consensus 107 gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~-~~~~~ 185 (350)
T d1koaa2 107 GGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ-SVKVT 185 (350)
T ss_dssp SCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTS-CEEEE
T ss_pred CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccccc-cccee
Confidence 22 8999995 46789999999999875433 33457
Q ss_pred ccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccceec----ccCCCcCccchHHHHHHHHHHHHhcc
Q 003465 727 AGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTYILD----QRISPPKKQKIVQDIALASIVALACL 787 (818)
Q Consensus 727 ~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~~~d----~~l~~~~~~~~~~~~~~~~~la~~C~ 787 (818)
.||+.||||| ..+++ ..+.|+.+ .+......+++. ....... .........+.++...|+
T Consensus 186 ~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L 264 (350)
T d1koaa2 186 TGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDD-SAFSGISEDGKDFIRKLL 264 (350)
T ss_dssp CSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCC-GGGGGCCHHHHHHHHHHC
T ss_pred cCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCc-ccccCCCHHHHHHHHHHc
Confidence 8999999999 44443 44455421 111111112211 1111111 111112234556777999
Q ss_pred CCCCCCCCChHHHHHH
Q 003465 788 QSKPKSVPTMQRVSQE 803 (818)
Q Consensus 788 ~~~p~~RP~m~~V~~~ 803 (818)
+.||++|||+.|+++.
T Consensus 265 ~~dP~~R~t~~eil~h 280 (350)
T d1koaa2 265 LADPNTRMTIHQALEH 280 (350)
T ss_dssp CSSGGGSCCHHHHHHS
T ss_pred cCChhHCcCHHHHhcC
Confidence 9999999999999874
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.47 E-value=3e-15 Score=158.44 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=68.2
Q ss_pred CCCCCCeeeccCCcCCCC----cCccccCCCCCCEEEcCCCcccccCCc-------------CcCCCCCCCEEeccCCcC
Q 003465 315 HLTRLTTLKLFSNQINGS----IPLGIGNLENLERVDMSSNKLEGPIPL-------------TIGDLTNLIYLDLSLNQL 377 (818)
Q Consensus 315 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------------~l~~l~~L~~L~Ls~n~l 377 (818)
..++|+.|+|++|.+... +...+..+++|+.|++++|.+...... .....+.|+.+++++|.+
T Consensus 91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i 170 (344)
T d2ca6a1 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 170 (344)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence 345555555555554432 112233445555555555554311000 012334556666666655
Q ss_pred CCC----CCcccCCCCCCCEEEccCCcCccc-----CCccccCCCCCCEEecccCcCccc----CCccccCCCCCCEEEC
Q 003465 378 SGP----IPSTFGHLTLLKFLNLNSNKLNGS-----IPSELMNCFSLQSLILSNNSLTGR----IPSEIRNLSYLHELDL 444 (818)
Q Consensus 378 ~~~----~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L 444 (818)
+.. +...+..++.|+.|++++|.+... +...+..+++|+.|++++|.++.. +...+..+++|++|++
T Consensus 171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L 250 (344)
T d2ca6a1 171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 250 (344)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence 422 122234455666666666665431 122344556666666666666432 2234455666666666
Q ss_pred cCCcCCcc
Q 003465 445 SLNFISGM 452 (818)
Q Consensus 445 s~N~l~~~ 452 (818)
++|.+++.
T Consensus 251 s~n~i~~~ 258 (344)
T d2ca6a1 251 NDCLLSAR 258 (344)
T ss_dssp TTCCCCHH
T ss_pred hcCccCch
Confidence 66666543
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.3e-14 Score=148.13 Aligned_cols=43 Identities=30% Similarity=0.326 Sum_probs=37.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|+++.+||+|||+|+............+||+.|+|||
T Consensus 128 p~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE 170 (299)
T d1ua2a_ 128 PNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPE 170 (299)
T ss_dssp GGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHH
T ss_pred cceEEecCCCccccccCccccccCCCcccccceecChhhccHH
Confidence 8999999999999999999998766544455668999999999
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.6e-15 Score=151.40 Aligned_cols=178 Identities=24% Similarity=0.260 Sum_probs=74.4
Q ss_pred cceEEEccCCCCCCC-CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCC-cCCCC-CchhhcCCCCCCee
Q 003465 246 NLNSLDLSSKQLSGP-LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHN-SLFGP-IPPTLSHLTRLTTL 322 (818)
Q Consensus 246 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L 322 (818)
+|++|+++++.++.. +...+..+++|++|++++|.+++..+..+..+++|++|+++++ .++.. +......+++|++|
T Consensus 47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L 126 (284)
T d2astb2 47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126 (284)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence 445555554444321 1222344555555555555554444444455555555555553 22211 11112344555555
Q ss_pred eccCCc-CCCC-cCccc-cCCCCCCEEEcCCCc--cccc-CCcCcCCCCCCCEEeccCC-cCCCCCCcccCCCCCCCEEE
Q 003465 323 KLFSNQ-INGS-IPLGI-GNLENLERVDMSSNK--LEGP-IPLTIGDLTNLIYLDLSLN-QLSGPIPSTFGHLTLLKFLN 395 (818)
Q Consensus 323 ~L~~n~-l~~~-~~~~l-~~l~~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 395 (818)
++++|. +++. +...+ ..+++|+.|+++++. ++.. +......+++|++|++++| .+++.....+..+++|++|+
T Consensus 127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~ 206 (284)
T d2astb2 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 206 (284)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEE
Confidence 555542 2211 11111 123455555555432 2111 1111223445555555443 23333334444445555555
Q ss_pred ccCC-cCcccCCccccCCCCCCEEecccC
Q 003465 396 LNSN-KLNGSIPSELMNCFSLQSLILSNN 423 (818)
Q Consensus 396 L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N 423 (818)
+++| .+++.....+..+++|+.|++++|
T Consensus 207 L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 207 LSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 5543 343333333444455555555544
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=9.4e-15 Score=150.94 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=54.8
Q ss_pred cccccc---CCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------cc--CCCcc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~--~~~~~ 755 (818)
|+|||+ ++++.+||+|||+|+...... .....+||+.||||| ..+++ ..+.|+. .. +....
T Consensus 135 p~Nil~~~~~~~~~vkl~DFG~a~~~~~~~-~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~ 213 (307)
T d1a06a_ 135 PENLLYYSLDEDSKIMISDFGLSKMEDPGS-VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEN 213 (307)
T ss_dssp GGGEEESSSSTTCCEEECCC-------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred ccceeecccCCCceEEEeccceeEEccCCC-eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCC
Confidence 899999 468899999999999765433 234567999999999 33333 4445542 11 11111
Q ss_pred ccce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 LTYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
..++ ......... +........+.++...|++.||++|||+.|+++.
T Consensus 214 ~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h 264 (307)
T d1a06a_ 214 DAKLFEQILKAEYEFDS-PYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQH 264 (307)
T ss_dssp HHHHHHHHHTTCCCCCT-TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred HHHHHHHHhccCCCCCC-ccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence 1111 111111111 1111222345667789999999999999999873
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.44 E-value=1.9e-14 Score=151.36 Aligned_cols=152 Identities=16% Similarity=0.057 Sum_probs=99.1
Q ss_pred hhhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh--------------------------------
Q 003465 649 DLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA-------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~-------------------------------- 691 (818)
.|.....|| |.||+|.. .+|+.||||.+........+.+.+|+
T Consensus 30 ~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~ 109 (352)
T d1koba_ 30 YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLS 109 (352)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCC
T ss_pred ceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCC
Confidence 355556677 89999995 57999999977655444455677887
Q ss_pred ----------------------------------------cc---ccccccC--CCCcccccccccceeccCCCCCcccc
Q 003465 692 ----------------------------------------HV---FNNILLN--SEFEAFFGNFGVARLLNSDSSNRTLI 726 (818)
Q Consensus 692 ----------------------------------------h~---~~NILLd--~~~~~ki~DFGla~~~~~~~~~~~~~ 726 (818)
|+ |+|||++ .++.+||+|||+|+.+..+. .....
T Consensus 110 gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~-~~~~~ 188 (352)
T d1koba_ 110 GGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE-IVKVT 188 (352)
T ss_dssp CCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS-CEEEE
T ss_pred CChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCC-ceeec
Confidence 22 8999998 67899999999999876543 33456
Q ss_pred ccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccceec----ccCCCcCccchHHHHHHHHHHHHhcc
Q 003465 727 AGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTYILD----QRISPPKKQKIVQDIALASIVALACL 787 (818)
Q Consensus 727 ~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~~~d----~~l~~~~~~~~~~~~~~~~~la~~C~ 787 (818)
.||++|+||| ..+++ ..+.|+.+ .+......+++. ....... .........+.+++..|+
T Consensus 189 ~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L 267 (352)
T d1koba_ 189 TATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDE-DAFSSVSPEAKDFIKNLL 267 (352)
T ss_dssp CSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCS-STTTTSCHHHHHHHHTTS
T ss_pred cCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCc-ccccCCCHHHHHHHHHHc
Confidence 7999999999 34443 44455421 122111111111 1111111 111122234566778999
Q ss_pred CCCCCCCCChHHHHH
Q 003465 788 QSKPKSVPTMQRVSQ 802 (818)
Q Consensus 788 ~~~p~~RP~m~~V~~ 802 (818)
+.||++|||+.|+++
T Consensus 268 ~~dp~~R~s~~eil~ 282 (352)
T d1koba_ 268 QKEPRKRLTVHDALE 282 (352)
T ss_dssp CSSGGGSCCHHHHHT
T ss_pred cCChhHCcCHHHHhc
Confidence 999999999999976
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.43 E-value=2.8e-14 Score=146.49 Aligned_cols=87 Identities=23% Similarity=0.117 Sum_probs=62.6
Q ss_pred hhhhcccc----CcEEEEEcCCCcEEEEEeccccc--cchhhhhHhhh--------------------------------
Q 003465 650 LISDIALE----LDVTAAFTKHGCLVAEYGSEQGR--SAFFKSFQNEA-------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~--~~~~~~f~~E~-------------------------------- 691 (818)
|.....|| |+||+|...+|+.||||.+.... ....+.|.+|+
T Consensus 4 Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~ 83 (286)
T d1ob3a_ 4 YHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLD 83 (286)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred ceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeeh
Confidence 44445677 78999998889999999765432 22345688887
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGT 729 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt 729 (818)
|+ |+|||+|.++.+|++|||+|..............||
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~ 163 (286)
T d1ob3a_ 84 QDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVT 163 (286)
T ss_dssp EEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CC
T ss_pred hhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCccccceeccc
Confidence 22 899999999999999999999876554444556799
Q ss_pred cceeCCC
Q 003465 730 YRYIAPA 736 (818)
Q Consensus 730 ~gy~aPE 736 (818)
+.|+|||
T Consensus 164 ~~y~~pE 170 (286)
T d1ob3a_ 164 LWYRAPD 170 (286)
T ss_dssp CTTCCHH
T ss_pred chhhhHH
Confidence 9999999
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.43 E-value=2.3e-14 Score=150.81 Aligned_cols=105 Identities=12% Similarity=0.038 Sum_probs=64.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||+|.++.+||+|||+|+.+... ....+||+.||||| ..+.+ ..+.|+.+ .+......+
T Consensus 169 P~NILl~~~g~ikL~DFG~a~~~~~~---~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~ 245 (350)
T d1rdqe_ 169 PENLLIDQQGYIQVTDFGFAKRVKGR---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ 245 (350)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSC---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHcccCCCCCEEeeeceeeeecccc---cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHH
Confidence 89999999999999999999987432 34568999999999 33333 44455421 111111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+......... ..+......+.++...|++.||++|+ ++.++++
T Consensus 246 ~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~ 293 (350)
T d1rdqe_ 246 IYEKIVSGKV-RFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHHHHHHCCC-CCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHhcCCC-CCCccCCHHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence 1111111110 00111223455677799999999994 8888875
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.9e-14 Score=146.18 Aligned_cols=89 Identities=24% Similarity=0.159 Sum_probs=67.8
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEecccccc--chhhhhHhhh-----------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRS--AFFKSFQNEA----------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~--~~~~~f~~E~----------------------------- 691 (818)
++|.....|| |+||+|.. .+|+.||||+++.... ...++|.+|+
T Consensus 2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e 81 (298)
T d1gz8a_ 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 81 (298)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence 3566666677 89999995 6799999997654322 2345678887
Q ss_pred -------------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccc
Q 003465 692 -------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||+|.+..+||+|||+|+....+......
T Consensus 82 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~ 161 (298)
T d1gz8a_ 82 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTH 161 (298)
T ss_dssp CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTC
T ss_pred ecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCccccee
Confidence 22 89999999999999999999987655545556
Q ss_pred cccccceeCCC
Q 003465 726 IAGTYRYIAPA 736 (818)
Q Consensus 726 ~~gt~gy~aPE 736 (818)
..||+.|+|||
T Consensus 162 ~~gt~~y~apE 172 (298)
T d1gz8a_ 162 EVVTLWYRAPE 172 (298)
T ss_dssp CBCCCTTCCHH
T ss_pred ecccceeeehh
Confidence 68999999999
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.43 E-value=6.6e-15 Score=155.81 Aligned_cols=136 Identities=20% Similarity=0.158 Sum_probs=66.0
Q ss_pred CCCCCeeeccCCcCCCC----cCccccCCCCCCEEEcCCCccccc-----CCcCcCCCCCCCEEeccCCcCCCC----CC
Q 003465 316 LTRLTTLKLFSNQINGS----IPLGIGNLENLERVDMSSNKLEGP-----IPLTIGDLTNLIYLDLSLNQLSGP----IP 382 (818)
Q Consensus 316 l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~----~~ 382 (818)
.+.|+.|.+++|.+... +...+..++.|+.|++++|.+... +...+..+++|+.|++++|.++.. +.
T Consensus 157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~ 236 (344)
T d2ca6a1 157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 236 (344)
T ss_dssp CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence 44555555555554421 112233445566666666555421 122344455566666666655422 22
Q ss_pred cccCCCCCCCEEEccCCcCcccCCc----ccc--CCCCCCEEecccCcCcccC----Ccccc-CCCCCCEEECcCCcCCc
Q 003465 383 STFGHLTLLKFLNLNSNKLNGSIPS----ELM--NCFSLQSLILSNNSLTGRI----PSEIR-NLSYLHELDLSLNFISG 451 (818)
Q Consensus 383 ~~~~~l~~L~~L~L~~N~l~~~~~~----~~~--~l~~L~~L~Ls~N~l~~~~----p~~l~-~l~~L~~L~Ls~N~l~~ 451 (818)
..+..+++|++|+|++|.+++.... .+. ..+.|++|++++|.++... ...+. +++.|+.|++++|++..
T Consensus 237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 3345556666666666665532111 111 1245666666666654321 12221 35566666666666643
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=5.8e-14 Score=130.07 Aligned_cols=128 Identities=19% Similarity=0.160 Sum_probs=75.6
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 176 (818)
|.+...+++|+|++|+++. ++..+..+++|++|+|++|.++. + +.|..+++|++|++++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 5556667777777777663 34445666777777777777663 3 2466667777777777776644444455666777
Q ss_pred EEEccCCCCCCCCc-cCCCCCCCCcEEEcccCcCCccC---CccccCCCCCCEEE
Q 003465 177 ILDLSSNSLVGPIP-FTLGHLTQLTTLKLFSNQINGCI---PLDFGNLRHLKEVD 227 (818)
Q Consensus 177 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~ 227 (818)
+|++++|.+..... ..+..+++|++|++++|.++... +..+..+++|++||
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 77777776653211 24556666666666666654321 11244555555554
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.42 E-value=2.7e-14 Score=145.14 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=68.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---------CCC-cchHHHHhcc-----------cCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---------KHP-QEILSLFSST-----------SDP 752 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---------~~~-~~~l~~~~~~-----------~~~ 752 (818)
|+|||+|.++.+||+|||+|+.+..+. ..+..+||..|+||| +.+ +...+.|+.+ .+.
T Consensus 138 p~Nill~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~ 216 (277)
T d1phka_ 138 PENILLDDDMNIKLTDFGFSCQLDPGE-KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW 216 (277)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred cceEEEcCCCCeEEccchheeEccCCC-ceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCC
Confidence 899999999999999999999876543 334578999999999 111 1244555421 111
Q ss_pred Ccccc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 HITLT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 ~~~~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..... .+......... +........+.+++..|++.+|++||++.||++
T Consensus 217 ~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~ 269 (277)
T d1phka_ 217 HRKQMLMLRMIMSGNYQFGS-PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 269 (277)
T ss_dssp CSSHHHHHHHHHHTCCCCCT-TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CCCHHHHHHHHHhCCCCCCC-cccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 11111 12222221111 111223345667788999999999999999865
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=2.5e-13 Score=119.42 Aligned_cols=102 Identities=26% Similarity=0.312 Sum_probs=50.0
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
|+|+|++|+++ .++ .++++++|++|++++|.++ .+|..|+.+++|++|++++|.+++ +| .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 34555555554 222 2555555555555555555 344445555555555555555542 22 2555555555555555
Q ss_pred CCCCCC-ccCCCCCCCCcEEEcccCcCC
Q 003465 184 SLVGPI-PFTLGHLTQLTTLKLFSNQIN 210 (818)
Q Consensus 184 ~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 210 (818)
.++... ...+..+++|++|++++|+++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 554321 123444455555555555443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=2.3e-13 Score=119.69 Aligned_cols=102 Identities=28% Similarity=0.398 Sum_probs=79.5
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccC
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 207 (818)
|+|+|++|+++ .++ .+..+++|++|++++|+++ .+|..++.+++|++|++++|.+++. | .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 67889999888 444 4788888999999999887 5677788888888888888888753 3 4778888888888888
Q ss_pred cCCccC-CccccCCCCCCEEEccCCcCC
Q 003465 208 QINGCI-PLDFGNLRHLKEVDLSGNKLN 234 (818)
Q Consensus 208 ~l~~~~-~~~l~~l~~L~~L~l~~n~l~ 234 (818)
+++... ...+..+++|++|++++|.++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 887543 245677777888888877765
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.2e-14 Score=150.96 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=67.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||+|+++.+|++|||+|+.........+...||+.|+||| ..+.+ ..+.|+.+ .+......+
T Consensus 131 p~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~ 210 (320)
T d1xjda_ 131 LDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE 210 (320)
T ss_dssp GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred ccceeecCCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999997765555556678999999999 33333 44455421 111112122
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChH-HHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQ-RVS 801 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~-~V~ 801 (818)
+......... ..+......+.++...|++.||++||++. |+.
T Consensus 211 ~~~~i~~~~~-~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~ 253 (320)
T d1xjda_ 211 LFHSIRMDNP-FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 253 (320)
T ss_dssp HHHHHHHCCC-CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHHHHcCCC-CCCccCCHHHHHHHHHhcccCCCCCcCHHHHHH
Confidence 2111111111 01111123455677799999999999985 664
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=7.3e-14 Score=129.41 Aligned_cols=108 Identities=22% Similarity=0.145 Sum_probs=46.6
Q ss_pred CCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEE
Q 003465 147 NLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEV 226 (818)
Q Consensus 147 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 226 (818)
+..+|++|+|++|+|+ .++..+..+++|++|+|++|.++. + ..+..+++|++|++++|+++...+..+..+++|++|
T Consensus 16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L 92 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 92 (162)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence 3444444444444444 223333444444444444444442 1 124444455555555555443333333444555555
Q ss_pred EccCCcCCCCC-CCCCCCCCcceEEEccCCCC
Q 003465 227 DLSGNKLNGPI-ASTIGDLTNLNSLDLSSKQL 257 (818)
Q Consensus 227 ~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l 257 (818)
++++|++.... ...+..+++|++|++++|.+
T Consensus 93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124 (162)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred eeccccccccccccccccccccchhhcCCCcc
Confidence 55555443211 12233444444444444444
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.41 E-value=5.2e-14 Score=148.92 Aligned_cols=106 Identities=17% Similarity=0.063 Sum_probs=64.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcc-hHHHHhcc-----------cCCCccc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQE-ILSLFSST-----------SDPHITL- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~-~l~~~~~~-----------~~~~~~~- 756 (818)
|+|||+|+++.+||+|||+|+.+.... ....+||+.|+||| ..+++ ..+.|+.+ .+.....
T Consensus 135 P~NILl~~~g~iKl~DFGla~~~~~~~--~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~ 212 (364)
T d1omwa3 135 PANILLDEHGHVRISDLGLACDFSKKK--PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK 212 (364)
T ss_dssp GGGEEECSSSCEEECCCTTCEECSSSC--CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSS
T ss_pred cceeEEcCCCcEEEeeeceeeecCCCc--ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHH
Confidence 899999999999999999999775432 34568999999999 22233 44556421 1111111
Q ss_pred --cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-----hHHHHH
Q 003465 757 --TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-----MQRVSQ 802 (818)
Q Consensus 757 --~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-----m~~V~~ 802 (818)
.++......... ..+......+.++...|++.||++||+ +.|+.+
T Consensus 213 ~~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~ 264 (364)
T d1omwa3 213 DKHEIDRMTLTMAV-ELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 264 (364)
T ss_dssp CHHHHHHHSSSCCC-CCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred HHHHHHHhcccCCC-CCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence 111111111111 111112234556777999999999999 466653
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.9e-14 Score=143.99 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=67.5
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCC----CCCcc-hHHHHhcc---------cCCCccccc
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQE-ILSLFSST---------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~-~l~~~~~~---------~~~~~~~~~ 758 (818)
|+|||+|. ++.+||+|||+|+..... ..+..+||+.|+||| ....+ ..+.|+.+ ..+.....+
T Consensus 138 p~NIll~~~~~~vkl~DFG~a~~~~~~--~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~ 215 (273)
T d1xwsa_ 138 DENILIDLNRGELKLIDFGSGALLKDT--VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE 215 (273)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCSS--CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH
T ss_pred ccceEEecCCCeEEECccccceecccc--cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchH
Confidence 89999985 479999999999876433 344578999999999 22222 34556422 222221222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH--HHccC
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ--EFLKF 807 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~--~L~~~ 807 (818)
+......... .. ...+.+++.+|++.||++|||+.|+++ .++++
T Consensus 216 i~~~~~~~~~--~~---s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~ 261 (273)
T d1xwsa_ 216 IIRGQVFFRQ--RV---SSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDV 261 (273)
T ss_dssp HHHCCCCCSS--CC---CHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred HhhcccCCCC--CC---CHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence 2222221111 11 123456777999999999999999986 35544
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.7e-13 Score=142.83 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=34.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++....... .....+||++|+|||
T Consensus 145 p~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE 191 (318)
T d3blha1 145 AANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPE 191 (318)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHH
T ss_pred chheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHH
Confidence 8999999999999999999987754321 223457999999999
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.8e-14 Score=143.88 Aligned_cols=108 Identities=22% Similarity=0.140 Sum_probs=66.3
Q ss_pred ccccccCCCC----cccccccccceeccCCCCCccccccccceeCCC---CCCc-chHHHHhcc-----------cCCCc
Q 003465 694 FNNILLNSEF----EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-EILSLFSST-----------SDPHI 754 (818)
Q Consensus 694 ~~NILLd~~~----~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~~-----------~~~~~ 754 (818)
|+|||++.++ .+|++|||+|+...... ......||+.|+||| ..+. ...+.|+.+ .+...
T Consensus 141 p~Nill~~~~~~~~~vkl~DfG~a~~~~~~~-~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~ 219 (293)
T d1jksa_ 141 PENIMLLDRNVPKPRIKIIDFGLAHKIDFGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 219 (293)
T ss_dssp GGGEEESCSSSSSCCEEECCCTTCEECTTSC-BCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cceEEEecCCCcccceEecchhhhhhcCCCc-cccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCC
Confidence 8999999877 48999999999875443 234567999999999 2222 245555422 11111
Q ss_pred cccceecccCCCcCc---cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 TLTYILDQRISPPKK---QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~---~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+++......... ..+......+.++...|++.||++|||+.|+++
T Consensus 220 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 270 (293)
T d1jksa_ 220 TKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 270 (293)
T ss_dssp SHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 111221111111110 001112234567788999999999999999986
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.5e-13 Score=142.40 Aligned_cols=53 Identities=28% Similarity=0.360 Sum_probs=40.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHh
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFS 747 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~ 747 (818)
|+|||+++++.+||+|||+++...... ......||+.|+||| ..+++ ..+.|+
T Consensus 144 p~NILi~~~~~~kl~dfg~~~~~~~~~-~~~~~~gT~~Y~APE~~~~~~y~~~~DiwS 200 (305)
T d1blxa_ 144 PQNILVTSSGQIKLADFGLARIYSFQM-ALTSVVVTLWYRAPEVLLQSSYATPVDLWS 200 (305)
T ss_dssp GGGEEECTTCCEEECSCCSCCCCCGGG-GGCCCCCCCTTCCHHHHTTCCCCTHHHHHH
T ss_pred ccEEEEcCCCCeeecchhhhhhhcccc-cCCCcccChhhcCcchhcCCCCChhehhhc
Confidence 899999999999999999998754332 334578999999999 33333 445554
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=1.2e-13 Score=140.84 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=63.6
Q ss_pred ccccccCCCCcccccccccceeccCCC---CCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS---SNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~---~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~ 755 (818)
|+|||++.++..|++|||.++...... ......+||++||||| ..+.+ ..+.|+.. .+....
T Consensus 139 P~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~ 218 (277)
T d1o6ya_ 139 PANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 218 (277)
T ss_dssp GGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred CcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcC
Confidence 899999999999999999998764432 2345678999999999 33333 34445321 121111
Q ss_pred ccceecccCCCcC---ccchHHHHHHHHHHHHhccCCCCCCCC-ChHHHHHHHccC
Q 003465 756 LTYILDQRISPPK---KQKIVQDIALASIVALACLQSKPKSVP-TMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~---~~~~~~~~~~~~~la~~C~~~~p~~RP-~m~~V~~~L~~~ 807 (818)
..+++...+.... ..........+.++..+|++.||++|| ++.++.+.|.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~ 274 (277)
T d1o6ya_ 219 PVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 274 (277)
T ss_dssp HHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHH
Confidence 1122111111100 000111223456677799999999999 899999988765
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=7.5e-13 Score=138.24 Aligned_cols=108 Identities=19% Similarity=0.105 Sum_probs=66.2
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------c--CCCcc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------S--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~--~~~~~ 755 (818)
|+|||+++ ++.+||+|||+|+....... ....+||++||||| ..+++ ..+.|+.+ . +....
T Consensus 139 p~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~ 217 (335)
T d2ozaa1 139 PENLLYTSKRPNAILKLTDFGFAKETTSHNS-LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNH 217 (335)
T ss_dssp GGGEEESCSSTTCCEEECCCTTCEECCCCCC-CCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETT
T ss_pred ccccccccccccccccccccceeeeccCCCc-cccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCC
Confidence 89999986 55799999999998755433 34568999999999 22232 44556421 1 11111
Q ss_pred ccceec---ccC-CCcC---ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LTYILD---QRI-SPPK---KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~~~~d---~~l-~~~~---~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+..+ ..+ .... .+........+.++...|++.||++||++.|+++
T Consensus 218 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 271 (335)
T d2ozaa1 218 GLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 271 (335)
T ss_dssp CC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 111111 111 1111 0111233345677888999999999999999986
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=6.7e-14 Score=144.59 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=67.4
Q ss_pred ccccccC---CCCcccccccccceeccCCCC-------CccccccccceeCCC---CCCcc-hHHHHhc---------cc
Q 003465 694 FNNILLN---SEFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TS 750 (818)
Q Consensus 694 ~~NILLd---~~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~ 750 (818)
|+|||++ .+..+|++|||+|+.+..... .....+||+.||||| ..+.+ ..+.|+. ..
T Consensus 131 p~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~ 210 (299)
T d1ckia_ 131 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS 210 (299)
T ss_dssp GGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSS
T ss_pred HhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCC
Confidence 9999764 566899999999998754321 234678999999999 22222 2333321 11
Q ss_pred CCC--cccccee-------cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 DPH--ITLTYIL-------DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~~~--~~~~~~~-------d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+. ....+.. ...+..+...........+.+++..|++.+|++||++.++.+.|+.+
T Consensus 211 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~ 276 (299)
T d1ckia_ 211 LPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 276 (299)
T ss_dssp CTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHH
T ss_pred CcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence 111 1000000 00010000000011234567788899999999999999999888876
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=6.7e-13 Score=139.73 Aligned_cols=87 Identities=23% Similarity=0.203 Sum_probs=66.1
Q ss_pred hhhhcccc----CcEEEEEc-CCCcEEEEEeccccc-cchhhhhHhhh--------------------------------
Q 003465 650 LISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR-SAFFKSFQNEA-------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~-~~~~~~f~~E~-------------------------------- 691 (818)
|.....|| |+||+|+. .+|+.||||++.... ....+.+.+|+
T Consensus 10 Y~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~ 89 (345)
T d1pmea_ 10 YTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLV 89 (345)
T ss_dssp EEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEE
T ss_pred eEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEE
Confidence 44445666 89999984 679999999775433 23345677787
Q ss_pred ------------------------------------------cc---ccccccCCCCcccccccccceeccCCCC---Cc
Q 003465 692 ------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS---NR 723 (818)
Q Consensus 692 ------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~---~~ 723 (818)
|+ |+|||+|+++.+||+|||+|+....... ..
T Consensus 90 ~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~ 169 (345)
T d1pmea_ 90 THLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFL 169 (345)
T ss_dssp EECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTT
T ss_pred EeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceee
Confidence 22 8999999999999999999997744321 23
Q ss_pred cccccccceeCCC
Q 003465 724 TLIAGTYRYIAPA 736 (818)
Q Consensus 724 ~~~~gt~gy~aPE 736 (818)
...+||+.|+|||
T Consensus 170 ~~~~gt~~y~aPE 182 (345)
T d1pmea_ 170 TEYVATRWYRAPE 182 (345)
T ss_dssp CCCCSCGGGCCGG
T ss_pred ccccccceechHH
Confidence 5577999999999
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.30 E-value=3.6e-13 Score=138.30 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=67.3
Q ss_pred ccccccCC-----CCcccccccccceeccCCCC-------CccccccccceeCCC---CCCcc-hHHHHhc---------
Q 003465 694 FNNILLNS-----EFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHPQE-ILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILLd~-----~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~~~-~l~~~~~--------- 748 (818)
|+|||++. +..+||+|||+|+....... .....+||+.||||| ..+.+ ..+.|+.
T Consensus 129 p~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~ellt 208 (293)
T d1csna_ 129 PDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLR 208 (293)
T ss_dssp GGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHh
Confidence 89999975 56799999999998754311 234578999999999 22222 2233321
Q ss_pred ccCCC--cccc-------ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 749 TSDPH--ITLT-------YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 749 ~~~~~--~~~~-------~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+. .... .+.+..............+..+.++...|++.+|++||+++.+.+.|+++
T Consensus 209 g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~ 276 (293)
T d1csna_ 209 GSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV 276 (293)
T ss_dssp SSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred CCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHH
Confidence 11111 0000 01111110000000011234566777899999999999999998888765
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.7e-12 Score=136.90 Aligned_cols=40 Identities=33% Similarity=0.346 Sum_probs=34.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++.+|++|||+|+..... .+..+||..|+|||
T Consensus 149 p~NIL~~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE 188 (346)
T d1cm8a_ 149 PGNLAVNEDCELKILDFGLARQADSE---MTGYVVTRWYRAPE 188 (346)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSS---CCSSCSCGGGCCTH
T ss_pred cchhhcccccccccccccceeccCCc---cccccccccccCHH
Confidence 89999999999999999999976432 34567999999999
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.7e-12 Score=133.53 Aligned_cols=87 Identities=22% Similarity=0.107 Sum_probs=66.7
Q ss_pred hhhhcccc----CcEEEEEc-CCCcEEEEEeccccc--cchhhhhHhhh-------------------------------
Q 003465 650 LISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR--SAFFKSFQNEA------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~--~~~~~~f~~E~------------------------------- 691 (818)
|.....|| |+||+|+. .+|+.||||+++... ....+++.+|+
T Consensus 4 y~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~ 83 (292)
T d1unla_ 4 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFC 83 (292)
T ss_dssp EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred CEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeec
Confidence 44445666 89999995 679999999764332 22345678887
Q ss_pred ----------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCcccccc
Q 003465 692 ----------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAG 728 (818)
Q Consensus 692 ----------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~g 728 (818)
|+ |+|||++.++++|++|||.|+.............+
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~ 163 (292)
T d1unla_ 84 DQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVV 163 (292)
T ss_dssp SEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSCCS
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCccceeecc
Confidence 22 89999999999999999999988665555555678
Q ss_pred ccceeCCC
Q 003465 729 TYRYIAPA 736 (818)
Q Consensus 729 t~gy~aPE 736 (818)
+..|+|||
T Consensus 164 ~~~~~~pe 171 (292)
T d1unla_ 164 TLWYRPPD 171 (292)
T ss_dssp CGGGCCHH
T ss_pred ccchhhhh
Confidence 88999998
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.6e-12 Score=137.00 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=34.3
Q ss_pred ccccccCCCC-cccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.+. .+||+|||+|+.+...... ...+||..|+|||
T Consensus 150 p~NILl~~~~~~~kl~DFG~a~~~~~~~~~-~~~~gt~~y~aPE 192 (350)
T d1q5ka_ 150 PQNLLLDPDTAVLKLCDFGSAKQLVRGEPN-VSYICSRYYRAPE 192 (350)
T ss_dssp GGGEEECTTTCCEEECCCTTCEECCTTSCC-CSCCSCTTSCCHH
T ss_pred cceEEEecCCCceeEecccchhhccCCccc-ccccccccccChH
Confidence 8999999774 8999999999987544332 3457999999999
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.22 E-value=4.5e-12 Score=132.46 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=63.9
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh-------------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA------------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~------------------------------- 691 (818)
++|.....|| |+||+|+. .+|+.||||+++... .+++.+|+
T Consensus 35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~ 111 (328)
T d3bqca1 35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 111 (328)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence 3566666677 89999995 679999999876442 34566666
Q ss_pred ----------------------------------------cc---ccccccCCCC-cccccccccceeccCCCCCccccc
Q 003465 692 ----------------------------------------HV---FNNILLNSEF-EAFFGNFGVARLLNSDSSNRTLIA 727 (818)
Q Consensus 692 ----------------------------------------h~---~~NILLd~~~-~~ki~DFGla~~~~~~~~~~~~~~ 727 (818)
|+ |+|||++.+. .+|++|||+|+....... ....+
T Consensus 112 e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~-~~~~~ 190 (328)
T d3bqca1 112 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE-YNVRV 190 (328)
T ss_dssp ECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCC-CCSCC
T ss_pred eecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCCCc-ccccc
Confidence 22 8999998655 689999999998754432 34567
Q ss_pred cccceeCCC
Q 003465 728 GTYRYIAPA 736 (818)
Q Consensus 728 gt~gy~aPE 736 (818)
||..|+|||
T Consensus 191 ~t~~y~aPE 199 (328)
T d3bqca1 191 ASRYFKGPE 199 (328)
T ss_dssp SCGGGCCHH
T ss_pred cCccccCcc
Confidence 999999999
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.3e-12 Score=133.63 Aligned_cols=107 Identities=20% Similarity=0.091 Sum_probs=65.0
Q ss_pred ccccccCCC--CcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------c--CCCccc
Q 003465 694 FNNILLNSE--FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------S--DPHITL 756 (818)
Q Consensus 694 ~~NILLd~~--~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~--~~~~~~ 756 (818)
|+|||++.+ ..+||+|||+++...... ......||++|+||| ..+++ ..+.|+.+ . +.....
T Consensus 130 p~NIll~~~~~~~ikl~DFG~~~~~~~~~-~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~ 208 (321)
T d1tkia_ 130 PENIIYQTRRSSTIKIIEFGQARQLKPGD-NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN 208 (321)
T ss_dssp GGGEEESSSSCCCEEECCCTTCEECCTTC-EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred ccceeecCCCceEEEEcccchhhccccCC-cccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCH
Confidence 899999854 578999999999864432 234567999999999 22222 44555422 1 112221
Q ss_pred ccee----cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYIL----DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~----d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+++ ........ .........+.++...|++.||++|||+.|+++
T Consensus 209 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~ 257 (321)
T d1tkia_ 209 QQIIENIMNAEYTFDE-EAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHHHHHHHHTCCCCCH-HHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCh-hhccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1222 11111110 000111234567788999999999999999986
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2.1e-12 Score=133.99 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=64.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC--C-C--Ccc-hHHHHhcc-----------cCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA--K-H--PQE-ILSLFSST-----------SDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE--~-~--~~~-~l~~~~~~-----------~~~~~~ 755 (818)
|+|||||.++.+||+|||+|+.+..... ......||+.|+||| + . ..+ ..+.|+.+ .+....
T Consensus 157 p~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~ 236 (322)
T d1vzoa_ 157 LENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG 236 (322)
T ss_dssp GGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT
T ss_pred ccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999999999999998754322 234567999999999 1 1 112 34556421 111111
Q ss_pred ccce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-----hHHHHH
Q 003465 756 LTYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-----MQRVSQ 802 (818)
Q Consensus 756 ~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-----m~~V~~ 802 (818)
..+. ......... +.+......+.++...|++.+|++||+ ++|+.+
T Consensus 237 ~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~ 291 (322)
T d1vzoa_ 237 EKNSQAEISRRILKSEP-PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 291 (322)
T ss_dssp SCCCHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred HHHHHHHHHHhcccCCC-CCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence 1111 111111110 111223345566777999999999995 678775
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.14 E-value=1.3e-13 Score=132.50 Aligned_cols=113 Identities=26% Similarity=0.297 Sum_probs=65.7
Q ss_pred CCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCC
Q 003465 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHL 196 (818)
Q Consensus 117 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 196 (818)
++.++..+++|++|+|++|+++. ++ .+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++.. ..+..+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence 34456666667777777666663 33 3666666666666666665 3444444445666666666666532 235556
Q ss_pred CCCcEEEcccCcCCccCC-ccccCCCCCCEEEccCCcCC
Q 003465 197 TQLTTLKLFSNQINGCIP-LDFGNLRHLKEVDLSGNKLN 234 (818)
Q Consensus 197 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~ 234 (818)
++|++|++++|+++.... ..+..+++|+.|++++|.+.
T Consensus 115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred ccccccccccchhccccccccccCCCccceeecCCCccc
Confidence 666666666666653211 24556666666666666554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=5.6e-11 Score=108.79 Aligned_cols=88 Identities=23% Similarity=0.158 Sum_probs=41.2
Q ss_pred cCCCCCCcEEEcCCCC-CcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCC
Q 003465 97 FSCFPNLESFRIWYSN-ISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 175 (818)
+..+++|++|++++++ ++...+..|.++++|+.|+|++|+++...|..|..+++|++|+|++|+++...+..|. ..+|
T Consensus 27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l 105 (156)
T d2ifga3 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSL 105 (156)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCC
T ss_pred ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-cccc
Confidence 4445555555554332 4443344455555555555555555544444455555555555555555422222222 2234
Q ss_pred CEEEccCCCC
Q 003465 176 SILDLSSNSL 185 (818)
Q Consensus 176 ~~L~L~~n~l 185 (818)
++|+|++|.+
T Consensus 106 ~~L~L~~Np~ 115 (156)
T d2ifga3 106 QELVLSGNPL 115 (156)
T ss_dssp CEEECCSSCC
T ss_pred cccccCCCcc
Confidence 4455544443
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=5e-11 Score=125.66 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=26.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++..|++|||+++...... ..+..+||..|+|||
T Consensus 147 P~Nil~~~~~~~kl~df~~~~~~~~~~-~~~~~~~t~~y~aPE 188 (355)
T d2b1pa1 147 PSNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPE 188 (355)
T ss_dssp GGGEEECTTCCEEECCCCC----------------CCTTCCHH
T ss_pred ccccccccccceeeechhhhhcccccc-ccccccccccccChh
Confidence 899999999999999999998764432 234567999999999
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.4e-10 Score=106.06 Aligned_cols=90 Identities=24% Similarity=0.206 Sum_probs=37.8
Q ss_pred cccCCCCCCCEEEccCCC-CCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCC
Q 003465 167 STLGHLTRLSILDLSSNS-LVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLT 245 (818)
Q Consensus 167 ~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 245 (818)
..+..+++|++|++++|. ++...+..|.++++|+.|++++|+++...+..|..+++|++|+|++|+++...+..+..+
T Consensus 25 ~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~- 103 (156)
T d2ifga3 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL- 103 (156)
T ss_dssp TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-
T ss_pred ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-
Confidence 333344444444443332 333333334444444444444444444444444444444444444444443222222222
Q ss_pred cceEEEccCCCC
Q 003465 246 NLNSLDLSSKQL 257 (818)
Q Consensus 246 ~L~~L~L~~n~l 257 (818)
+|+.|+|++|.+
T Consensus 104 ~l~~L~L~~Np~ 115 (156)
T d2ifga3 104 SLQELVLSGNPL 115 (156)
T ss_dssp CCCEEECCSSCC
T ss_pred cccccccCCCcc
Confidence 344455554444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.09 E-value=1e-12 Score=125.95 Aligned_cols=130 Identities=27% Similarity=0.327 Sum_probs=74.1
Q ss_pred CchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCC
Q 003465 309 IPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHL 388 (818)
Q Consensus 309 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 388 (818)
++..+..+++|+.|+|++|+++. ++ .+..+++|+.|++++|.+.. ++.....+++|+.|++++|.++.. ..+..+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccc
Confidence 34556666666666666666653 33 35566666666666666652 333333344566666666666532 235556
Q ss_pred CCCCEEEccCCcCcccCC-ccccCCCCCCEEecccCcCcccCCcc----------ccCCCCCCEEE
Q 003465 389 TLLKFLNLNSNKLNGSIP-SELMNCFSLQSLILSNNSLTGRIPSE----------IRNLSYLHELD 443 (818)
Q Consensus 389 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ 443 (818)
++|+.|++++|+++.... ..+..+++|+.|++++|++....+.. +..+|+|+.||
T Consensus 115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 666677777666653211 34566666777777776664332221 34566666665
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=5.4e-11 Score=125.25 Aligned_cols=40 Identities=30% Similarity=0.350 Sum_probs=30.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++.+|++|||+|..... ......||..|+|||
T Consensus 149 p~NILi~~~~~~kl~dfg~a~~~~~---~~~~~~g~~~y~apE 188 (348)
T d2gfsa1 149 PSNLAVNEDCELKILDFGLARHTDD---EMTGYVATRWYRAPE 188 (348)
T ss_dssp GGGEEECTTCCEEECCC----CCTG---GGSSSCHHHHTSCHH
T ss_pred CccccccccccccccccchhcccCc---ccccccccccccCch
Confidence 8999999999999999999976532 234467999999999
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=1.4e-10 Score=122.82 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=32.6
Q ss_pred ccccccCCCCc------ccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFE------AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~------~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++. +|++|||.|+..... ....+||..|+|||
T Consensus 154 p~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~---~~~~~gt~~y~aPE 199 (362)
T d1q8ya_ 154 PENVLMEIVDSPENLIQIKIADLGNACWYDEH---YTNSIQTREYRSPE 199 (362)
T ss_dssp GGGEEEEEEETTTTEEEEEECCCTTCEETTBC---CCSCCSCGGGCCHH
T ss_pred hhHeeeeccCcccccceeeEeecccccccccc---cccccccccccChh
Confidence 89999987764 899999999865432 23467999999999
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=2.9e-08 Score=90.98 Aligned_cols=66 Identities=27% Similarity=0.245 Sum_probs=33.7
Q ss_pred CCCCCCcEEECcCCCCCCCC--ccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCc
Q 003465 146 GNLNNLVELYLSRSNLNGPI--PSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQING 211 (818)
Q Consensus 146 ~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 211 (818)
..+++|++|+|++|+++... +..+..+++|+.|+|++|.++...+.......+|+.|++++|.+..
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence 44556666666666665321 2334455666666666666654322122223345556666665543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=1.3e-07 Score=86.40 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=17.2
Q ss_pred CCCCCEEEccCCcCCCCC--chhhcCCCCCCeeeccCCcCC
Q 003465 292 LTSLSDLDLSHNSLFGPI--PPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 292 l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~ 330 (818)
+++|++|+|++|+++... +..+..+++|+.|++++|.++
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~ 104 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 104 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence 444455555555444321 222334444444444444444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.60 E-value=1.8e-05 Score=72.14 Aligned_cols=39 Identities=8% Similarity=0.046 Sum_probs=19.4
Q ss_pred hcCCcCCCEEECCCCcCccC-------CcccccCCCCCCeeeCcCC
Q 003465 501 IGNCSGLLNVTLSNNSLDGT-------IPLEMGKIIFLEYLDLSYN 539 (818)
Q Consensus 501 ~~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~ls~N 539 (818)
+...++|+.|++++|.+... +...+..-++|+.|+++++
T Consensus 96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 33445566666666544322 2233334456666666544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.45 E-value=1.3e-05 Score=73.11 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=18.0
Q ss_pred CCCCcEEEcCCC-CCccc----CCccccCCCcCceecccCcccc
Q 003465 100 FPNLESFRIWYS-NISGN----IPSEIGALSKLQILDLSHNNLT 138 (818)
Q Consensus 100 l~~L~~L~L~~n-~~~~~----~~~~~~~l~~L~~L~Ls~n~l~ 138 (818)
.+.|++|+|+++ .+... +-..+...++|++|+|++|.+.
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~ 57 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 57 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence 345566666543 23321 2223444455555555555544
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.38 E-value=5.3e-05 Score=70.67 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=19.6
Q ss_pred ccccccCCCCcccccccccceecc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLN 717 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~ 717 (818)
|+|||++++ .+++.|||+|+...
T Consensus 131 P~NILv~~~-~~~liDFG~a~~~~ 153 (191)
T d1zara2 131 QYNVLVSEE-GIWIIDFPQSVEVG 153 (191)
T ss_dssp TTSEEEETT-EEEECCCTTCEETT
T ss_pred hhheeeeCC-CEEEEECCCcccCC
Confidence 999999965 58999999998653
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.77 E-value=0.00021 Score=64.70 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=20.7
Q ss_pred hhcCCcCCCEEEC--CCCcCcc----CCcccccCCCCCCeeeCcCCC
Q 003465 500 EIGNCSGLLNVTL--SNNSLDG----TIPLEMGKIIFLEYLDLSYNN 540 (818)
Q Consensus 500 ~~~~l~~L~~L~L--s~N~l~~----~~p~~l~~l~~L~~L~ls~N~ 540 (818)
.+...++|+.++| ++|.+.. .+...+...+.|+.|++++++
T Consensus 97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 3444555555333 3445543 233344456667777766554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.60 E-value=8.2e-05 Score=67.54 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=29.1
Q ss_pred CCCCCcEEEcCC-CCCccc----CCccccCCCcCceecccCcccccC----CCCCCCCCCCCcEEECcCCCCC
Q 003465 99 CFPNLESFRIWY-SNISGN----IPSEIGALSKLQILDLSHNNLTGT----IPSKLGNLNNLVELYLSRSNLN 162 (818)
Q Consensus 99 ~l~~L~~L~L~~-n~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~ 162 (818)
+.+.|++|+|++ +.++.. +-..+...++|++|+|++|.++.. +-..+...+.+++|++++|.+.
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 345566666654 234321 223344555555555555555422 1112233445555555555443
|