Citrus Sinensis ID: 003466
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 818 | 2.2.26 [Sep-21-2011] | |||||||
| B0F481 | 833 | Bifunctional dethiobiotin | yes | no | 0.929 | 0.912 | 0.657 | 0.0 | |
| Q6ZKV8 | 821 | Bifunctional dethiobiotin | yes | no | 0.935 | 0.931 | 0.547 | 0.0 | |
| P57379 | 428 | Adenosylmethionine-8-amin | yes | no | 0.440 | 0.841 | 0.240 | 3e-25 | |
| P44426 | 430 | Adenosylmethionine-8-amin | yes | no | 0.378 | 0.720 | 0.261 | 3e-25 | |
| P22805 | 455 | Adenosylmethionine-8-amin | yes | no | 0.414 | 0.745 | 0.268 | 8e-25 | |
| P12995 | 429 | Adenosylmethionine-8-amin | N/A | no | 0.388 | 0.741 | 0.270 | 1e-24 | |
| E6SRG2 | 744 | Biotin biosynthesis bifun | yes | no | 0.449 | 0.494 | 0.242 | 1e-24 | |
| Q8A7T2 | 741 | Biotin biosynthesis bifun | yes | no | 0.414 | 0.457 | 0.260 | 1e-24 | |
| P53656 | 429 | Adenosylmethionine-8-amin | N/A | no | 0.408 | 0.778 | 0.260 | 3e-24 | |
| E1WTS4 | 748 | Biotin biosynthesis bifun | yes | no | 0.400 | 0.438 | 0.258 | 3e-23 |
| >sp|B0F481|BIODA_ARATH Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=BIO3-BIO1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/827 (65%), Positives = 633/827 (76%), Gaps = 67/827 (8%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQTG+P DSD
Sbjct: 29 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 88
Query: 90 SRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L + S M LNF
Sbjct: 89 SRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSESGMCSLNF 140
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 141 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 194
Query: 210 ESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 195 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 252
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL+EWF ES
Sbjct: 253 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 312
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 313 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 372
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 373 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 432
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 433 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 488
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE
Sbjct: 489 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFS 548
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 549 EIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 606
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 607 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 666
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSK--------------------------------- 716
LLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 667 LLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN 726
Query: 717 ------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL 764
LWD EL+QQISSH VQRVV +GTL A+EL+A N+GY SLYA SLL
Sbjct: 727 HNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLL 786
Query: 765 KKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811
LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KLY+RL EF++
Sbjct: 787 IMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNRT 833
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 2 |
| >sp|Q6ZKV8|BIODA_ORYSJ Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Oryza sativa subsp. japonica GN=BIO3-BIO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/849 (54%), Positives = 577/849 (67%), Gaps = 84/849 (9%)
Query: 17 LLRLFHHSTFHPQPLD-------LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS 69
+LRL H+ H +PL+ P F ++ ANT +GKTLVSAGL +S L SP+ S
Sbjct: 1 MLRLLRHARRHSTSSSSSAAAAAVPLTSPAFAVFGANTGVGKTLVSAGLVASLLASPSPS 60
Query: 70 ANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLS 129
+ YLKP+QTG+P DSD+RF+F + P+L LRR L L+ + L A+ L
Sbjct: 61 PST-VAYLKPLQTGFPDDSDARFVFDRAPAL-LRR-----LRLAGGGASTRLVASNHTL- 112
Query: 130 SRDLPFQPQKFNSEMYD-LNFREENRIS--GEEDSSVSELVCKTLFAWEEAVSPHLAAER 186
F S D L R++ ++ GEE LVC+T++AW E VSPHLAAER
Sbjct: 113 ----------FPSPAVDPLPERQDTVVNYGGEEGVEEKALVCRTVYAWREPVSPHLAAER 162
Query: 187 ESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLY 246
E G V D +V + + L + E G E+ ++ETAGGVASPGPSG+LQCDLY
Sbjct: 163 E-GMPVEDEEVRWLVDRWLAE--------EDGGGEVWKVLETAGGVASPGPSGTLQCDLY 213
Query: 247 RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVP 306
R RLP +LVGDGRLGGIS T+SAYE+L LRGYDV +V+ ED GL N+ L+SYLR RVP
Sbjct: 214 RSSRLPAVLVGDGRLGGISSTLSAYETLLLRGYDVGSVILEDRGLSNDRFLLSYLRKRVP 273
Query: 307 VLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFT 366
V VLPP+P+D +DL +WF ES + F SLK+ + +S R+QRL M +++ L WWPFT
Sbjct: 274 VHVLPPIPEDPKDDLTDWFSESSSAFSSLKDSLQSFHSRRVQRLNSMQRKSKYLLWWPFT 333
Query: 367 QHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMG 426
QH LVP ++VTVIDSR GENFS Y+ K+K I QFDACASWWTQGPD+ LQIELARDMG
Sbjct: 334 QHDLVPVDSVTVIDSRFGENFSAYK-VKDKTIVPQFDACASWWTQGPDSNLQIELARDMG 392
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
Y AAR+GHVMFPENV+EPAL CAELLL GVGK WASR YFSDNGSTAIEIALKMAFRK++
Sbjct: 393 YAAARYGHVMFPENVHEPALRCAELLLGGVGKDWASRVYFSDNGSTAIEIALKMAFRKYA 452
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
DH ++VD +E + KVLAL GSYHGDTLGAMEAQAPS YT FLQQPWYSGRGL
Sbjct: 453 CDHGIIVDSEKDIRSEGSVHFKVLALNGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGL 512
Query: 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
FLDPPTV++ N LSLP + + D F S E+F + RD+S A++Y SYISQ
Sbjct: 513 FLDPPTVYIKNKSANLSLPPSIMHDQLSSCDTCFSSLTEVFCKTRDTSSAANVYVSYISQ 572
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
L Q S I ALIIEPV+ AGGMH++DPLFQR+LVKEC+NRKIPVIFDEVFTGF
Sbjct: 573 QLSQYAMSNNSEHIAALIIEPVIQGAGGMHLIDPLFQRLLVKECKNRKIPVIFDEVFTGF 632
Query: 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK---------- 716
WRLGVE+ ++LLGC PDI+CY KL+TGG++PLAATLAT +F++F DSK
Sbjct: 633 WRLGVESASELLGCFPDISCYAKLMTGGIVPLAATLATEPIFEAFRSDSKLTALLHGHSY 692
Query: 717 -----------------------------------LWDLELIQQISSHRTVQRVVALGTL 741
LWD L+ +SS V+RVV+LGTL
Sbjct: 693 TAHPMGCTAAVKAIQWYKDPSTNSNIDLDRMKLKELWDSALVNHLSSLPNVKRVVSLGTL 752
Query: 742 CAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLK 800
CAIEL+A G +AGY SLYA+SL+++LR ED +Y RPLGNVIYLMCGPC++ + C++ L K
Sbjct: 753 CAIELKAEGSDAGYASLYASSLIRQLREEDNIYARPLGNVIYLMCGPCTTQDSCTRQLAK 812
Query: 801 LYQRLEEFD 809
+++RL++ +
Sbjct: 813 VHRRLQKLN 821
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P57379|BIOA_BUCAI Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 115/478 (24%), Positives = 188/478 (39%), Gaps = 118/478 (24%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIE 420
W P++ P TVI ++ VY KN+ D +SWW +
Sbjct: 13 IWHPYSSMN-NPHPCYTVISAK-----GVYLKLKNR--KYMIDGMSSWWAAIHGYNHPV- 63
Query: 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 480
L + + + HVMF + PA+ L+ + + SD+GS AIE+A+KM
Sbjct: 64 LNKALKKQIRKMSHVMFGGITHPPAISLCRKLISLTPEKLDC-VFLSDSGSVAIEVAIKM 122
Query: 481 AFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540
+ + LG+ L ++ YHGDT AM P Q +
Sbjct: 123 LIQYW--------QALGQKRKL------FLTIRNGYHGDTFSAMSVSDPK---NSFHQIY 165
Query: 541 YS--GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
++ + LF D P FY+ D+ D+ S
Sbjct: 166 HNLLPKHLFADAPV--------------------------------SSFYKNWDNEDILS 193
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
+ +++ K++G +I+EP+V GGM+ P++ + + C + IPVI
Sbjct: 194 F------KKIIEKNSFKIAG----VILEPIVQGVGGMNFYHPMYLKQIKILCNHYSIPVI 243
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD--------- 709
FDE+ TGF R G + VPDI C GK +TGG I LAATL + + D
Sbjct: 244 FDEIATGFGRTGKMFAFEHANVVPDILCLGKSITGGTITLAATLTSRHIADTISKGKVGC 303
Query: 710 -----SFVGD---------------SKLWDLELIQ----------QISSHRTVQRVVALG 739
+++G+ + W ++++ + +H V V LG
Sbjct: 304 FMHGPTYMGNPLACAVANANIKILKTNQWKIQVLNIEKQLFKSLMPLINHPYVTDVRVLG 363
Query: 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQL 797
+ +E C+ S+ S+ K E+GV++RP +IY++ SP +L
Sbjct: 364 AIGVVE-----CSR---SINMISIQKFFVENGVWIRPFKKLIYIVPPYIISPHTLKKL 413
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P44426|BIOA_HAEIN Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 179/429 (41%), Gaps = 119/429 (27%)
Query: 402 FDACASWWT-----QGP--DATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454
D +SWW P +A Q +LA+ H+MF ++PA+E A+LL+Q
Sbjct: 48 IDGMSSWWAALHGYNHPRLNAAAQNQLAK--------MSHIMFGGFTHDPAVELAQLLVQ 99
Query: 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514
+ G + +F+D+GS A+E+A+KMA + + H K ++ K ++
Sbjct: 100 ILPNG-LDKIFFADSGSVAVEVAMKMAIQ---YQH-------AKGEVQR---QKFATIRS 145
Query: 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574
YHGDT AM P+ TG +S + P +N W
Sbjct: 146 GYHGDTWNAMSVCDPT--TGMHHLFHHSLPVQYFLPQPNIPFNESW-------------- 189
Query: 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634
C+ + + +LL+ G + I ALI+EPVV AGG
Sbjct: 190 ----NDCAIEPL-------------------ADLLKKKGNE----IAALILEPVVQGAGG 222
Query: 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694
M+ P + C+ I +IFDE+ TGF R G A+ G PDI C GK LTGG
Sbjct: 223 MYFYSPTYLVKAQALCKQYGILLIFDEIATGFGRTGKLFAAEHAGISPDIMCIGKALTGG 282
Query: 695 VIPLAATLATNAVFDSFV-GDSKLW----------------------------------- 718
+ L+A++ T + + G++K +
Sbjct: 283 YLTLSASITTTEIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRI 342
Query: 719 DLELIQQ---ISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR 775
+ L QQ +S V+ V ALG + +E+++A + +L+ + E GV++R
Sbjct: 343 ESSLKQQLSPLSEKDYVKEVRALGAIGVVEMKSA--------VNMKTLVPRFVEQGVWIR 394
Query: 776 PLGNVIYLM 784
P G ++Y+M
Sbjct: 395 PFGKLVYVM 403
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P22805|BIOA_LYSSH Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Lysinibacillus sphaericus GN=bioA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 167/398 (41%), Gaps = 59/398 (14%)
Query: 348 QRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACAS 407
Q L ++ ++ + W P +Q K EA I + GE +Y +Q +++ DA +S
Sbjct: 3 QVLTELQEKDLQHVWHPCSQMK--DYEAFPPIVIKKGEGVWLYDEQNQRYL----DAVSS 56
Query: 408 WWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467
WW +++ + A H +F +EPA++ A+ L+ + + +F+
Sbjct: 57 WWV-NLFGHANPRISQALSEQAFTLEHTIFANFSHEPAIKLAQKLV-ALTPQSLQKVFFA 114
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
DNGS+AIE+ALKM+F+ T K + + LAL +YHG+TLGA+
Sbjct: 115 DNGSSAIEVALKMSFQYHM-------------QTGKTQKKRFLALTDAYHGETLGALSVG 161
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
V +YN + P L + + D C F
Sbjct: 162 G------------------------VDLYNEVY---QPLLLDTVRAQGPDCFRCP----F 190
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647
DS I S++ L + I A+IIEP++ AA GM M ++ R L
Sbjct: 191 KHHPDSCHAQCI--SFVEDQLRMH-----HKEITAVIIEPLIQAAAGMKMYPAIYLRRLR 243
Query: 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ C + +I DE+ GF R G + PD C K LTGG +PL+ + TN V
Sbjct: 244 ELCTQYDVHLIADEIAVGFGRTGTLFACEQANISPDFMCLSKGLTGGYLPLSVVMTTNDV 303
Query: 708 FDSFVGDSKLWDLELIQQISSHRTVQRVVALGTLCAIE 745
+ +F D L + T+ VAL L E
Sbjct: 304 YQAFYDDYATMKAFLHSHSYTGNTLACRVALEVLAIFE 341
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Lysinibacillus sphaericus (taxid: 1421) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P12995|BIOA_ECOLI Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Escherichia coli (strain K12) GN=bioA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 167/418 (39%), Gaps = 100/418 (23%)
Query: 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462
D +SWW +L M HVMF + PA+E L+ +
Sbjct: 47 DGMSSWWA-AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLEC 105
Query: 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522
+ +D+GS A+E+A+KMA + + E FL + YHGDT G
Sbjct: 106 -VFLADSGSVAVEVAMKMALQYWQAKGEARQRFL--------------TFRNGYHGDTFG 150
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
AM DP +S W LPE L++ + S
Sbjct: 151 AMSV---------------------CDPDNSM--HSLWKGYLPENLFAPAPQ-------S 180
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
R + ++ERD A + +++ + I A+IIEP+V AGGM M P +
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEW 227
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
+ + K C I +I DE+ TGF R G + PDI C GK LTGG + L+ATL
Sbjct: 228 LKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATL 287
Query: 703 ATNAVFD--------------SFVGD---------------SKLW-------DLELIQQI 726
T V + +F+G+ S W +++L +Q+
Sbjct: 288 TTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL 347
Query: 727 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 784
+ R + V + L AI G + A+L K E GV++RP G +IYLM
Sbjct: 348 APARDAEMVADVRVLGAI-----GVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLM 400
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|E6SRG2|BIOAB_BACT6 Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 124/511 (24%), Positives = 202/511 (39%), Gaps = 143/511 (27%)
Query: 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWW--------------TQGPDATLQIEL 421
+T I S+ E+ ++ ++ +F QFD W Q AT+ +E
Sbjct: 298 LTTIGSKVSEDKTLIEEAGYRFSDSQFDREHLWHPYTSTTDPLPVYKVEQAEGATITLES 357
Query: 422 ARDM------------GYT-----------AARFGHVMFPENVYEPALECAELLLQGVGK 458
+ + GY + HVMF +EPA+E +LLL V
Sbjct: 358 GQTLIEGMSSWWCAIHGYNNPVLNHAATEQIGKMSHVMFGGLTHEPAIELGKLLLPLVPP 417
Query: 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518
+ +++D+GS A+E+ALKMA + + GK +K + ++ YHG
Sbjct: 418 S-MQKIFYADSGSVAVEVALKMAVQYW----------YGKGKEKKN---NFVTIRSGYHG 463
Query: 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
DT AM P TG S + P Y+ W
Sbjct: 464 DTWNAM--SVCDPVTGMHSLFGSSLPIRYFAPQPRSRYDGDW------------------ 503
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
+ DS +L +I + + + ALI+EP+V AGGM
Sbjct: 504 ----------DAGDSMELQNIIEQHHEE-------------LAALILEPIVQGAGGMWFY 540
Query: 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPL 698
P + R + C+ + +IFDE+ TGF R G + G PDI C GK LTGG + L
Sbjct: 541 HPQYLREAARLCKQYGLLLIFDEIATGFGRTGKLFAWEHAGTEPDIMCIGKALTGGYMTL 600
Query: 699 AATLATNAVFD--------------SFVGD---------------SKLWD---------L 720
+A L TN V D +F+G+ S ++D +
Sbjct: 601 SAVLTTNEVADAISNHSPGVFMHGPTFMGNPLACAVACASVRLLTSPVYDWQGKVNRISM 660
Query: 721 ELIQQISSHR---TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL 777
+L ++++ R V+ V LG + IE+ ++ A + ++ E+G+++RP
Sbjct: 661 QLREELAPARQLPQVKDVRILGAIGVIEVTE--------NVDMAWMQRRFVEEGIWVRPF 712
Query: 778 GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808
G ++YLM PE ++L L + ++E
Sbjct: 713 GKLVYLMPPFIIEPEQLTKLTSGLIKIIKEM 743
|
Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) (taxid: 693979) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q8A7T2|BIOAB_BACTN Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=bioB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 116/445 (26%), Positives = 185/445 (41%), Gaps = 106/445 (23%)
Query: 402 FDACASWW--TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459
+ +SWW G + + + A+D + HVMF ++PA+E +LLL V
Sbjct: 362 IEGMSSWWCAVHGYNHPVLNQAAKDQ---LDKMSHVMFGGLTHDPAIELGKLLLPLVPPS 418
Query: 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519
+ +++D+GS A+E+ALKMA + + K + + ++ YHGD
Sbjct: 419 -MQKIFYADSGSVAVEVALKMAVQYWY-------------AAGKPDKNNFVTIRSGYHGD 464
Query: 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579
T AM P TG S + P ++ +W + D
Sbjct: 465 TWNAM--SVCDPVTGMHSLFGSSLPVRYFVPAPSSRFDGEW--------------NPDEI 508
Query: 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639
R+ I E+ S +LA ALI+EP+V AGGM
Sbjct: 509 IPLRETI---EKHSKELA------------------------ALILEPIVQGAGGMWFYH 541
Query: 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLA 699
P + R K C+ I +IFDE+ TGF R G + G PDI C GK LTGG + L+
Sbjct: 542 PQYLREAEKLCKEHDILLIFDEIATGFGRTGKLFAWEHAGVEPDIMCIGKALTGGYMTLS 601
Query: 700 ATLATNAVFD--------------SFVGDS----------------------KLWDLELI 723
A LA+N + D +F+G+ K + +L
Sbjct: 602 AVLASNQIADTISNHAPKAFMHGPTFMGNPLACAVACASVRLLLDSGWAENVKRIEAQLK 661
Query: 724 QQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYL 783
++++ R +V + L AI G S+ A + ++ E+G+++RP G ++YL
Sbjct: 662 EELAPARKFPQVADVRILGAI-----GVIQTERSVSMAYMQRRFVEEGIWVRPFGKLVYL 716
Query: 784 MCGPCSSPEVCSQL---LLKLYQRL 805
M SPE S+L +LK+ + +
Sbjct: 717 MPPFIISPEQLSKLTSGVLKIVREM 741
|
Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) (taxid: 226186) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P53656|BIOA_ESCVU Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Escherichia vulneris GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 113/434 (26%), Positives = 172/434 (39%), Gaps = 100/434 (23%)
Query: 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459
Q D +SWW L M HVMF + PA+ L+ +
Sbjct: 44 QLVDGMSSWWA-AIHGYNHPHLNAAMKTQIEAMSHVMFGGITHAPAVSLCRKLVAMTPEA 102
Query: 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519
+ +D+GS A+E+++KMA + + E FL + YHGD
Sbjct: 103 LEC-VFLADSGSVAVEVSMKMALQYWQAKGESRRRFL--------------TFRRGYHGD 147
Query: 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579
T GAM A DP +S W LP+ L++ E
Sbjct: 148 TFGAMSA---------------------CDPDNSM--HSLWAGYLPDNLFAPAPE----- 179
Query: 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639
SR + ++ERD A + +++ + I A+I+EP+V AGGM +
Sbjct: 180 --SRFDGEWDERDIVGFARLMAAHRHE-------------IAAVILEPIVQGAGGMRLYH 224
Query: 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLA 699
P + + + C I +I DE+ TGF R G + PDI C GK LTGG + L+
Sbjct: 225 PEVLKRIRRMCDREGILLIADEIATGFGRTGKLFACEHADITPDILCLGKALTGGTMTLS 284
Query: 700 ATLATNAVFDSF----------------------VGDSKL-------WDL-------ELI 723
ATL T AV ++ V ++ L W + +L
Sbjct: 285 ATLTTRAVAETIRNGEAGCFMHGPTFMGNPLACAVANASLELLARGEWQVQVAAIEAQLK 344
Query: 724 QQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYL 783
++++ R + V + L AI G + + A+L + E GV++RP G +IYL
Sbjct: 345 RELAPARAAETVADVRVLGAI-----GVIETHQPVNMAALQRFFVEQGVWIRPFGKLIYL 399
Query: 784 MCGPCSSPEVCSQL 797
M SPE S+L
Sbjct: 400 MPPYVISPEQLSKL 413
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Escherichia vulneris (taxid: 566) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|E1WTS4|BIOAB_BACF6 Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides fragilis (strain 638R) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 113/437 (25%), Positives = 185/437 (42%), Gaps = 109/437 (24%)
Query: 402 FDACASWW--TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459
+ +SWW G + + + +D +R HVMF ++PA+E +LLL V
Sbjct: 362 IEGMSSWWCAVHGYNHPILNQAVQDQ---LSRMSHVMFGGLTHDPAIELGKLLLPLVPPS 418
Query: 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519
+ +++D+GS A+E+ALKMA + + K + + ++ YHGD
Sbjct: 419 -MQKIFYADSGSVAVEVALKMAVQYWY-------------AAGKPEKNNFVTIRNGYHGD 464
Query: 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579
T AM P TG +S + +LP + H
Sbjct: 465 TWNAMSVC--DPVTGM---------------------HSIFGSALP-------IRHFLPA 494
Query: 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639
SR F +E + D+ + ++LL+ K + + A I+EP+V AGGM
Sbjct: 495 PSSR---FGDEWNPEDIRPL------EHLLE----KHTDELAAFILEPIVQGAGGMRFYH 541
Query: 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLA 699
P + R + C + +IFDE+ TGF R G + G PDI C GK LTGG + L+
Sbjct: 542 PEYLREAARLCHRYGVLLIFDEIATGFGRTGKLFAWEHAGVEPDIMCIGKALTGGYMTLS 601
Query: 700 ATLATNAVFD--------------SFVGDS----------------------KLWDLELI 723
A L TN V D +F+G+ K + +L
Sbjct: 602 AVLTTNEVADCISNHAPGAFMHGPTFMGNPLACAVACASVRLLLTSGWQENVKRIEAQLN 661
Query: 724 QQISSHRTVQRVV---ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNV 780
++++ R + +V LG + IE++ N Y L ++ E+G+++RP G +
Sbjct: 662 RELAPARELPQVADVRVLGAIGVIEMKEP-VNMAY-------LQRRFVEEGIWLRPFGKL 713
Query: 781 IYLMCGPCSSPEVCSQL 797
IY+M +PE ++L
Sbjct: 714 IYVMPPFIITPEQLTKL 730
|
Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). Bacteroides fragilis (strain 638R) (taxid: 862962) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 818 | ||||||
| 225446128 | 863 | PREDICTED: uncharacterized protein LOC10 | 0.926 | 0.878 | 0.667 | 0.0 | |
| 297796671 | 839 | mitochondrial bifunctional diaminopelarg | 0.941 | 0.917 | 0.651 | 0.0 | |
| 390980932 | 831 | Chain A, Structure Of Bifunctional Dapa | 0.938 | 0.924 | 0.652 | 0.0 | |
| 186532546 | 833 | adenosylmethionine-8-amino-7-oxononanoat | 0.929 | 0.912 | 0.657 | 0.0 | |
| 356550752 | 819 | PREDICTED: l-Lysine-8-amino-7-oxononanoa | 0.904 | 0.903 | 0.649 | 0.0 | |
| 390980930 | 831 | Chain A, Structure Of Selenomethionine S | 0.942 | 0.927 | 0.638 | 0.0 | |
| 449457131 | 852 | PREDICTED: bifunctional dethiobiotin syn | 0.979 | 0.940 | 0.615 | 0.0 | |
| 449510662 | 844 | PREDICTED: LOW QUALITY PROTEIN: bifuncti | 0.969 | 0.939 | 0.613 | 0.0 | |
| 357145329 | 825 | PREDICTED: adenosylmethionine-8-amino-7- | 0.942 | 0.934 | 0.555 | 0.0 | |
| 326517942 | 827 | predicted protein [Hordeum vulgare subsp | 0.924 | 0.914 | 0.563 | 0.0 |
| >gi|225446128|ref|XP_002270551.1| PREDICTED: uncharacterized protein LOC100259784 [Vitis vinifera] gi|297735352|emb|CBI17792.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/817 (66%), Positives = 632/817 (77%), Gaps = 59/817 (7%)
Query: 40 FQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLKPIQTGYPHDSDSRFLFTKLP 98
+ IW++NT LGKTLVS GL+++ LLSP SS + KF+Y+KP+QTG+P DSDS F+F K
Sbjct: 55 YTIWASNTGLGKTLVSTGLAAATLLSPFPSSDSAKFIYIKPVQTGFPSDSDSAFVFRKFS 114
Query: 99 SLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGE 158
L LRR ++ SN +L +S AA++ L F + E+ DL EE R+ GE
Sbjct: 115 QLVLRRRPSFAVSASNHVLKASASAAEAVLG-----FGSEG-EGELRDLGAYEERRLLGE 168
Query: 159 E--DSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESE 216
E + SEL CKT++AW EA+SPHLA ERE GG V D ++E LG+CLR G SE
Sbjct: 169 EWAAGAASELTCKTMYAWREAISPHLAVERE-GGAVPDKVLLEVLGRCLRIG----SEDG 223
Query: 217 RGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL 276
RG+M++ +VETAGGVASPGPSG+LQCDLYRPFRLP ILVGDGRLGGISGTISAYESLKL
Sbjct: 224 RGRMDVWSVVETAGGVASPGPSGTLQCDLYRPFRLPAILVGDGRLGGISGTISAYESLKL 283
Query: 277 RGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLK 336
RGYDVVA+V EDHGLVNEVPL+SYL NRVPVLVLPP+PQD S++LMEWFD+S VF SLK
Sbjct: 284 RGYDVVAIVIEDHGLVNEVPLLSYLGNRVPVLVLPPVPQDPSDNLMEWFDKSQAVFSSLK 343
Query: 337 NIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNK 396
IML YSERIQR DMPKRAG++FWWPFTQHKLVPEE VTVIDSRCGENFSV++ Q N
Sbjct: 344 EIMLSVYSERIQRFHDMPKRAGDIFWWPFTQHKLVPEETVTVIDSRCGENFSVHKVQNND 403
Query: 397 FIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV 456
FI QQFDACASWWTQGPDATLQIELARD+GY AARFGHVMFPENVYEPALECAELLL+GV
Sbjct: 404 FIAQQFDACASWWTQGPDATLQIELARDVGYAAARFGHVMFPENVYEPALECAELLLEGV 463
Query: 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516
GKGWASR +FSDNGSTAIE+ALKMAFRKFS DH +++D +T K IE+KV+ALKGSY
Sbjct: 464 GKGWASRTFFSDNGSTAIEVALKMAFRKFSLDHGIILDSTDPNTIGKFIEVKVIALKGSY 523
Query: 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576
HGDTLGAMEAQAPS YTGFLQQPWY+G+GLFLDPPT+FM + W LSLPE + S+ ++ +
Sbjct: 524 HGDTLGAMEAQAPSSYTGFLQQPWYTGKGLFLDPPTIFMCDGIWKLSLPEGVQSEKLKQE 583
Query: 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636
++TF SR E F + RD S LA YSS+ISQ L GL+ G IGALIIEPVVH +GGMH
Sbjct: 584 ELTFQSRGEFFSKSRDGSSLAGSYSSFISQQLSAYSGLRGFGHIGALIIEPVVHGSGGMH 643
Query: 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696
M+DPLFQR+LV EC++RKIPVIFDEVFTGFWRLG E+ ++LL C PDIAC+ KL+TGG+I
Sbjct: 644 MIDPLFQRVLVNECRSRKIPVIFDEVFTGFWRLGAESASELLCCQPDIACFAKLMTGGII 703
Query: 697 PLAATLATNAVFDSFVGDSK---------------------------------------- 716
PLAATLAT+AVF++F GDSK
Sbjct: 704 PLAATLATDAVFNAFAGDSKLKALLHGHSYTAHAMGCTAAVKSIKWFKDPQTNSNITSEG 763
Query: 717 -----LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG 771
LWD EL+ QISSH VQRVVALGTL A+ELQA G N GYGSLYA SLL KLREDG
Sbjct: 764 RLLRELWDAELVHQISSHPAVQRVVALGTLFALELQAEGSNVGYGSLYARSLLLKLREDG 823
Query: 772 VYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808
VY+RPLGNVIYLMCGPC+SPE CSQLL+KLY+RLEEF
Sbjct: 824 VYLRPLGNVIYLMCGPCTSPETCSQLLIKLYRRLEEF 860
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796671|ref|XP_002866220.1| mitochondrial bifunctional diaminopelargonate synthetase [Arabidopsis lyrata subsp. lyrata] gi|297312055|gb|EFH42479.1| mitochondrial bifunctional diaminopelargonate synthetase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1065 bits (2754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/839 (65%), Positives = 643/839 (76%), Gaps = 69/839 (8%)
Query: 21 FHHSTFHPQP---LDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77
F+ + P P + LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YL
Sbjct: 22 FNSTAVSPPPTHSIHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYL 81
Query: 78 KPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQP 137
KPIQTG+P DSDSRF+F+KL SLSLRR P L +SNS+L SSL AA+S L
Sbjct: 82 KPIQTGFPSDSDSRFVFSKLDSLSLRRQIP--LSISNSVLRSSLPAAES------LGLNV 133
Query: 138 QKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197
+ ++ M +LNFREE ++G EL+CKTL+AWE A+SPHLAAERE+ + DS V
Sbjct: 134 EVSDTGMCNLNFREEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TIEDSIV 187
Query: 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVG 257
+ + KCL++ +E S SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVG
Sbjct: 188 LRMIEKCLKEEMECGSRSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVG 245
Query: 258 DGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDS 317
DGRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D
Sbjct: 246 DGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDP 305
Query: 318 SNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVT 377
S+DL+EWF ES+ VF +LK M+LAY R++RL M K+AG++FWWPFTQHKLV EE VT
Sbjct: 306 SDDLIEWFVESNGVFKALKETMVLAYLGRLERLNSMAKQAGKVFWWPFTQHKLVHEETVT 365
Query: 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437
VIDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMF
Sbjct: 366 VIDSRCGENFSIYKASDNSSLTQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMF 425
Query: 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
PENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH DF
Sbjct: 426 PENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----DFCE 481
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557
K EK I +KVLAL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N
Sbjct: 482 KREEEKHIVVKVLALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN 541
Query: 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
W + LPE +S+I + TF RDEIF E RD++ LA IYS+Y+S++L ++ G++ S
Sbjct: 542 GAWNIFLPE-CFSEIAPEECGTFSIRDEIFDESRDATTLARIYSAYVSEHLQEDSGVRQS 600
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+GALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETTA+L
Sbjct: 601 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTAEL 660
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK--------------------- 716
L C PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 661 LDCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAA 720
Query: 717 ------------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN 752
LWD EL+QQIS H VQRVV LGTL A+EL+A N
Sbjct: 721 KAIQWFKDPETNHNITSQGKTLRELWDDELVQQISFHSAVQRVVVLGTLFALELKADASN 780
Query: 753 AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811
+GY SLYA SLL+ LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KLY+RL EF++
Sbjct: 781 SGYASLYAKSLLEMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNRT 839
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|390980932|pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980933|pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980934|pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980935|pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980936|pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To 7-Keto 8-Amino Pelargonic Acid (Kapa) gi|390980937|pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To 7-Keto 8-Amino Pelargonic Acid (Kapa) gi|390980938|pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To Dethiobiotin (Dtb). gi|390980939|pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To Dethiobiotin (Dtb) | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/835 (65%), Positives = 635/835 (76%), Gaps = 67/835 (8%)
Query: 22 HHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81
H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQ
Sbjct: 19 HMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQ 78
Query: 82 TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFN 141
TG+P DSDSRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L +
Sbjct: 79 TGFPSDSDSRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSE 130
Query: 142 SEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETL 201
S M LNFR+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ +
Sbjct: 131 SGMCSLNFRDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMI 184
Query: 202 GKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRL 261
KCL++ +E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRL
Sbjct: 185 EKCLKEEMECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRL 242
Query: 262 GGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDL 321
GGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL
Sbjct: 243 GGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDL 302
Query: 322 MEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDS 381
+EWF ES VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDS
Sbjct: 303 IEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDS 362
Query: 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV 441
RCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENV
Sbjct: 363 RCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENV 422
Query: 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501
YEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F
Sbjct: 423 YEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEE 478
Query: 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561
EK I +KV+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W
Sbjct: 479 EKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN 538
Query: 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621
+SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +G
Sbjct: 539 ISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVG 596
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
ALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC
Sbjct: 597 ALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK 656
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK------------------------- 716
PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 657 PDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQ 716
Query: 717 --------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG 756
LWD EL+QQISSH VQRVV +GTL A+EL+A N+GY
Sbjct: 717 WFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYA 776
Query: 757 SLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811
SLYA SLL LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KLY+RL EF++
Sbjct: 777 SLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNRT 831
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186532546|ref|NP_200567.2| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Arabidopsis thaliana] gi|391737955|sp|B0F481.1|BIODA_ARATH RecName: Full=Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial; AltName: Full=Bifunctional BIO3-BIO1 protein; Includes: RecName: Full=Dethiobiotin synthetase; AltName: Full=DTB synthetase; Short=DTBS; AltName: Full=Protein BIOTIN AUXOTROPH 3; Includes: RecName: Full=7,8-diamino-pelargonic acid aminotransferase; Short=DAPA AT; Short=DAPA aminotransferase; AltName: Full=7,8-diaminononanoate synthase; Short=DANS; AltName: Full=Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; AltName: Full=Diaminopelargonic acid synthase; AltName: Full=Protein BIOTIN AUXOTROPH 1; Flags: Precursor gi|158726301|gb|ABW80569.1| mitochondrial bifunctional diaminopelargonate synthase-dethiobiotin synthetase [Arabidopsis thaliana] gi|332009541|gb|AED96924.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Arabidopsis thaliana] gi|364285679|gb|AEW48251.1| bifunctional BIO3-BIO1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/827 (65%), Positives = 633/827 (76%), Gaps = 67/827 (8%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQTG+P DSD
Sbjct: 29 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 88
Query: 90 SRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L + S M LNF
Sbjct: 89 SRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSESGMCSLNF 140
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 141 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 194
Query: 210 ESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 195 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 252
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL+EWF ES
Sbjct: 253 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 312
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 313 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 372
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 373 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 432
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 433 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 488
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE
Sbjct: 489 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFS 548
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 549 EIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 606
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 607 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 666
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSK--------------------------------- 716
LLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 667 LLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN 726
Query: 717 ------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL 764
LWD EL+QQISSH VQRVV +GTL A+EL+A N+GY SLYA SLL
Sbjct: 727 HNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLL 786
Query: 765 KKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811
LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KLY+RL EF++
Sbjct: 787 IMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNRT 833
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550752|ref|XP_003543748.1| PREDICTED: l-Lysine-8-amino-7-oxononanoate aminotransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/824 (64%), Positives = 625/824 (75%), Gaps = 84/824 (10%)
Query: 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLS-PTSSANKKFVYLKPIQTGYPHDSDSR 91
LPLSHP + IW +NT +GKTLVSAG++++FLLS PT S +F YLKP+QTG+P DSDSR
Sbjct: 29 LPLSHPIYLIWGSNTGVGKTLVSAGIAAAFLLSSPTPS---QFHYLKPLQTGFPSDSDSR 85
Query: 92 FLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFRE 151
F+F KL LSL RN L S+ ++ S S
Sbjct: 86 FVFNKLRQLSLIRNPHIPLSASHRVINVSPAVTAS------------------------- 120
Query: 152 ENRISGEED-SSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLE 210
N ++GEE EL+CKTL+AWEEAVSPHLAAERE G VV DS V+ETLG+CL D E
Sbjct: 121 -NPLAGEEGVGPPPELLCKTLYAWEEAVSPHLAAERE-GLVVKDSAVLETLGECLEDVAE 178
Query: 211 SESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISA 270
+ ER E+LC+VETAGGVASPGPSGSLQCDLYRPFR+P +LVGDGRLGGISGTISA
Sbjct: 179 CGAGKERS--EVLCVVETAGGVASPGPSGSLQCDLYRPFRIPAVLVGDGRLGGISGTISA 236
Query: 271 YESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHN 330
YESLKLRGYDVVAVVFEDHGL+NE PLMSY+RN+VPVLVLPP+P+D NDLMEWF+ SH
Sbjct: 237 YESLKLRGYDVVAVVFEDHGLLNEGPLMSYMRNKVPVLVLPPIPKDPLNDLMEWFESSHY 296
Query: 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVY 390
+F +LK IML AY ERI++L DMP+ A ++ WWPFTQHKLVP+ VTVIDSRCGENFS++
Sbjct: 297 IFSNLKEIMLSAYFERIKKLHDMPREARDIIWWPFTQHKLVPDGGVTVIDSRCGENFSIF 356
Query: 391 QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAE 450
+ QK + I QFDACASWWTQGPDA +Q ELAR+MGY AARFGHVMFPENV+EPAL CAE
Sbjct: 357 KVQKTEVIAPQFDACASWWTQGPDAIMQTELAREMGYAAARFGHVMFPENVHEPALNCAE 416
Query: 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510
LLLQGVGKGWASR YFSDNGSTAIEIALKMAFRKFS DH ++V T E+ EL VL
Sbjct: 417 LLLQGVGKGWASRTYFSDNGSTAIEIALKMAFRKFSVDHGLIVHCHEDTTNERSTELMVL 476
Query: 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570
AL+ SYHGDTLGAMEAQAPS YTGFLQQPWY+GRGLFLDPP+VFM+NS W +S+PE +
Sbjct: 477 ALQRSYHGDTLGAMEAQAPSSYTGFLQQPWYTGRGLFLDPPSVFMHNSTWNVSIPEGYHL 536
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
+ ++ K TF S DEIF++ RD S+LA++YSSYIS+ L G + S +GALI+EPV+
Sbjct: 537 ESLKGK--TFASPDEIFHKGRDKSELATVYSSYISKVL---SGFRGSNNVGALIMEPVIQ 591
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGMHMVDPLFQR+LV EC++RKIPVIFDEVFTGFWRLGVET +L+ CVPDIAC+GKL
Sbjct: 592 GAGGMHMVDPLFQRVLVNECRSRKIPVIFDEVFTGFWRLGVETAVELIHCVPDIACFGKL 651
Query: 691 LTGGVIPLAATLATNAVFDSFVGDSK---------------------------------- 716
LTGG+IPLA TLATNAVFDSF+GDSK
Sbjct: 652 LTGGIIPLAVTLATNAVFDSFIGDSKLKALLHGHSYSAHAMGCAAAVKSIQWFKDPCSNP 711
Query: 717 -----------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLK 765
LWD +++ +ISSH +QRVVALGTLCA+EL+A G NAGYGSLYA LL+
Sbjct: 712 NITSEGRLLRELWDDKMVHRISSHPAIQRVVALGTLCALELKAEGNNAGYGSLYARPLLE 771
Query: 766 KLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809
KLREDGVYMRPLGNVIYL+CGPC+SPEVC+QLL+KL +RLEEFD
Sbjct: 772 KLREDGVYMRPLGNVIYLLCGPCTSPEVCNQLLVKLLRRLEEFD 815
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|390980930|pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980931|pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/838 (63%), Positives = 624/838 (74%), Gaps = 67/838 (7%)
Query: 19 RLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78
R H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLK
Sbjct: 16 RGSHXKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75
Query: 79 PIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQ 138
PIQTG+P DSDSRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L +
Sbjct: 76 PIQTGFPSDSDSRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVE 127
Query: 139 KFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198
S LNFR+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V+
Sbjct: 128 VSESGXCSLNFRDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVL 181
Query: 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD 258
+ + KCL++ E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGD
Sbjct: 182 QXIEKCLKEEXECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGD 239
Query: 259 GRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSS 318
GRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S
Sbjct: 240 GRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPS 299
Query: 319 NDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTV 378
+DL+EWF ES VF +LK +LA ER++RL K AGE+FWWP+TQHKLV +E VTV
Sbjct: 300 DDLIEWFVESDGVFKALKETXVLANLERLERLNGXAKLAGEVFWWPYTQHKLVHQETVTV 359
Query: 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438
IDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+ GYTAARFGHV FP
Sbjct: 360 IDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREXGYTAARFGHVXFP 419
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
ENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALK AFRKF DH +F
Sbjct: 420 ENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKXAFRKFCVDH----NFCEA 475
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
EK I +KV+AL+GSYHGDTLGA EAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N
Sbjct: 476 TEEEKHIVVKVIALRGSYHGDTLGAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNG 535
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
W +SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S
Sbjct: 536 SWNISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSA 593
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+GALIIEPV+H AGG H VDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LL
Sbjct: 594 HVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK---------------------- 716
GC PDIAC+ KLLTGG +PLA TLAT+AVFDSF GDSK
Sbjct: 654 GCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGCATAAK 713
Query: 717 -----------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 753
LWD EL+QQISSH VQRVV +GTL A+EL+A N+
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNS 773
Query: 754 GYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811
GY SLYA SLL LREDG++ RPLGNVIYL CGPC+SPE+C +LL KLY+RL EF++
Sbjct: 774 GYASLYAKSLLIXLREDGIFTRPLGNVIYLXCGPCTSPEICRRLLTKLYKRLGEFNRT 831
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457131|ref|XP_004146302.1| PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1027 bits (2655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/865 (61%), Positives = 632/865 (73%), Gaps = 64/865 (7%)
Query: 1 MLRLRRHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSS 60
MLRLRR+ + H +L + F + P T+ +W +NTS+GKTLVSAGL+S
Sbjct: 1 MLRLRRNFHLSRHP-LLFKPFSTAAPLPPLHLPLSHP-TYILWGSNTSVGKTLVSAGLAS 58
Query: 61 SFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSS 120
SFL S + S F+YLKPIQTG+P DSDSRF+F KL SL RR+ SL+ S+ +L +S
Sbjct: 59 SFLHSDSPS---NFLYLKPIQTGFPSDSDSRFVFHKLSSLYRRRHARLSLLASDHVLNAS 115
Query: 121 LFAAKSFLSSRDLPFQPQKFNSE--MYDLNFREENRISGEEDSSVSELVCKTLFAWEEAV 178
L S D SE M +L EE R+ GEE S L+CKT++AW+EAV
Sbjct: 116 LPVLNSITGCGD--------GSELAMCELGQYEEQRLVGEESGLGSRLICKTMYAWKEAV 167
Query: 179 SPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPS 238
SPHLAAERESG VV D+ VI++L CL GL ESE + +C+VETAGGVASPGPS
Sbjct: 168 SPHLAAERESG-VVDDALVIQSLQSCLNSGLGVNGESEGAETRAMCLVETAGGVASPGPS 226
Query: 239 GSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLM 298
GSLQCDLYR FRLP +LVGDGRLGGISGTISAYE+LKLRGYDV A++F D+GL NEV L
Sbjct: 227 GSLQCDLYRSFRLPCLLVGDGRLGGISGTISAYETLKLRGYDVAAIIFADNGLENEVVLS 286
Query: 299 SYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAG 358
S+LR+RVP+LVLPP+P D ++DLM+WFD S NVFDSLK IML AYS+R+ RL +MPK+A
Sbjct: 287 SHLRDRVPILVLPPIPADITDDLMDWFDNSQNVFDSLKEIMLSAYSKRLNRLREMPKKAK 346
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQ 418
+FWWPFTQHKLV +EAVTVIDSRCGENF+V++DQ ++F+ QQFDACASWWTQGPDA LQ
Sbjct: 347 SIFWWPFTQHKLVADEAVTVIDSRCGENFTVFKDQGDEFMTQQFDACASWWTQGPDAALQ 406
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478
ELA DMGY AARFGHVMFPENVYEPALECAELLL GVGKGWASR YFSDNGSTAIEIAL
Sbjct: 407 TELASDMGYAAARFGHVMFPENVYEPALECAELLLAGVGKGWASRVYFSDNGSTAIEIAL 466
Query: 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538
KMAFRKFS DH + ++ + +VLAL GSYHGDTLGAMEAQAPS YTGFLQQ
Sbjct: 467 KMAFRKFSIDHGIHDAQECNADAQRNLPFQVLALNGSYHGDTLGAMEAQAPSCYTGFLQQ 526
Query: 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
PWY+GRG+FLDPPTV+M+ KW LSLP L + + ++ F SRDE+F E+RD SDLA
Sbjct: 527 PWYTGRGIFLDPPTVYMHGGKWYLSLPVGLQPETLRLENAFFDSRDEVFDEKRDGSDLAE 586
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
IYS+Y+SQ L + +GALI+EPV+ AGGMHMVDPLFQR+LVKECQ++KIPVI
Sbjct: 587 IYSAYLSQQLSNSSKSNSL--LGALIMEPVIQGAGGMHMVDPLFQRVLVKECQDKKIPVI 644
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-- 716
FDEVFTGFWRLG ET A+LL CVPDIAC+ KL+TGG+IPL+ATLA+N+VF+SF+GDSK
Sbjct: 645 FDEVFTGFWRLGTETAAELLHCVPDIACFAKLMTGGIIPLSATLASNSVFESFIGDSKLE 704
Query: 717 -------------------------------------------LWDLELIQQISSHRTVQ 733
LWD L+ +ISSH V+
Sbjct: 705 ALLHGHSYSAHALGCTAAAKSIKWFKNSQTNLNINAEGTSLRELWDENLVYEISSHPAVK 764
Query: 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEV 793
RVVALGTL A+ELQA G NAGY SLYA SLL KLREDG+Y RPLGNVIYLMCGPC+ P+
Sbjct: 765 RVVALGTLFALELQADGSNAGYASLYARSLLLKLREDGIYTRPLGNVIYLMCGPCTKPDS 824
Query: 794 CSQLLLKLYQRLEEF-DKVEEKLKS 817
CSQLL+KL L++F + E L+S
Sbjct: 825 CSQLLIKLLGGLDDFISESRENLES 849
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510662|ref|XP_004163726.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/865 (61%), Positives = 626/865 (72%), Gaps = 72/865 (8%)
Query: 1 MLRLRRHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSS 60
MLRLRR+ + H +L + F + P T+ +W +NTS+GKTLVSAGL+S
Sbjct: 1 MLRLRRNFHLSRHP-LLFKPFSTAAPLPPLHLPLSHP-TYILWGSNTSVGKTLVSAGLAS 58
Query: 61 SFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSS 120
SFL S + S F+YLKPIQTG+P DSDSRF+F KL SL RR+ SL+ S+ +L +S
Sbjct: 59 SFLHSDSPS---NFLYLKPIQTGFPSDSDSRFVFHKLSSLYRRRHARLSLLASDHVLNAS 115
Query: 121 LFAAKSFLSSRDLPFQPQKFNSE--MYDLNFREENRISGEEDSSVSELVCKTLFAWEEAV 178
L S D SE M +L EE R+ GEE S L+CKT++AW+EAV
Sbjct: 116 LPVLNSITGCGD--------GSELAMCELGQYEEQRLVGEESGLGSRLICKTMYAWKEAV 167
Query: 179 SPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPS 238
SPHLAAERESG VV D+ VI++L CL GL ESE + +C+VETAGGVASPGPS
Sbjct: 168 SPHLAAERESG-VVDDALVIQSLQSCLNSGLGVNGESEGAETRAMCLVETAGGVASPGPS 226
Query: 239 GSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLM 298
GSLQCDLYR FRLP +LVGDGRLGGISGTISAYE+LKLRGYDV A++F D+GL NEV L
Sbjct: 227 GSLQCDLYRSFRLPCLLVGDGRLGGISGTISAYETLKLRGYDVAAIIFADNGLENEVVLS 286
Query: 299 SYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAG 358
S+LR+RVP+LVLPP+P D ++DLM+WFD S NVFDSLK IML AYS+R+ RL +MPK A
Sbjct: 287 SHLRDRVPILVLPPIPADITDDLMDWFDNSQNVFDSLKEIMLSAYSKRLNRLREMPKXAK 346
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQ 418
+FWWPFTQHKLV +EAVTVIDSRCGENF+V++DQ ++F+ QQFDACASWWTQGPDA LQ
Sbjct: 347 SIFWWPFTQHKLVADEAVTVIDSRCGENFTVFKDQGDEFMTQQFDACASWWTQGPDAALQ 406
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478
ELA DMGY AARFGHVMFPENVYEPALECAELLL GVGKGWASR YFSDNGSTAIEIAL
Sbjct: 407 TELASDMGYAAARFGHVMFPENVYEPALECAELLLAGVGKGWASRVYFSDNGSTAIEIAL 466
Query: 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538
KMAFRKFS DH + D + + EL VLAL GSYHGDTLGAMEAQAPS YTGFLQQ
Sbjct: 467 KMAFRKFSIDHGIH-DAQECNADAQRSELMVLALNGSYHGDTLGAMEAQAPSCYTGFLQQ 525
Query: 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
PWY+GRG+FLDPPTV+M+ KW LSLP L + T + +F E+RD SDLA
Sbjct: 526 PWYTGRGIFLDPPTVYMHGGKWYLSLPVGLQPE-------TLRLENALFDEKRDGSDLAE 578
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
IYS+Y+SQ L + +GALI+EPV+ AGGMHMVDPLFQR+LVKECQ++KIPVI
Sbjct: 579 IYSAYLSQQLSNSSKSNSL--LGALIMEPVIQGAGGMHMVDPLFQRVLVKECQDKKIPVI 636
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-- 716
FDEVFTGFWRLG ET A+LL CVPDIAC+ KL+TGG+IPL+ATLA+N+VF+SF+GDSK
Sbjct: 637 FDEVFTGFWRLGTETAAELLHCVPDIACFAKLMTGGIIPLSATLASNSVFESFIGDSKLE 696
Query: 717 -------------------------------------------LWDLELIQQISSHRTVQ 733
LWD L+ +ISSH V+
Sbjct: 697 ALLHGHSYSAHALGCTAAAKSIKWFKNSQTNLNINAEGTSLRELWDENLVYEISSHPAVK 756
Query: 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEV 793
RVVALGTL A+ELQA G NAGY SLYA SLL KLREDG+Y RPLGNVIYLMCGPC+ P+
Sbjct: 757 RVVALGTLFALELQADGSNAGYASLYARSLLLKLREDGIYTRPLGNVIYLMCGPCTKPDS 816
Query: 794 CSQLLLKLYQRLEEF-DKVEEKLKS 817
CSQLL+KL L++F + E L+S
Sbjct: 817 CSQLLIKLLGGLDDFISESRENLES 841
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357145329|ref|XP_003573605.1| PREDICTED: adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/851 (55%), Positives = 585/851 (68%), Gaps = 80/851 (9%)
Query: 14 RRILL-----RLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTS 68
RR+LL R + S+F LPL+ PTF ++ ANT +GKTLVSAGL++S L SPT+
Sbjct: 3 RRLLLAHARRRRHYSSSFSSA---LPLASPTFAVFGANTGVGKTLVSAGLAASLLRSPTA 59
Query: 69 SANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFL 128
S + +YLKP+QTG+P DSD+ FLF ++P+L LR + + L+ S L S
Sbjct: 60 SPSA-VLYLKPLQTGFPADSDAGFLFRRVPAL-LRPSTAARLVASLDTLSCSPSLEPPPP 117
Query: 129 SSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERES 188
S + F +GE ++ L C+TL+AW EAVSPHLA ERE
Sbjct: 118 SPEEAAFS------------------YAGEGETVRKILTCRTLYAWREAVSPHLAVERE- 158
Query: 189 GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRP 248
G V D+ V L CL + G+ E+ ++ETAGGVASPGPSG+LQCDLYRP
Sbjct: 159 GMAVEDAHVRSRLAACL----VEGEDLGEGEGEVWKLIETAGGVASPGPSGTLQCDLYRP 214
Query: 249 FRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVL 308
FRLP ILVGDGRLGGIS T+SAYE+L LRGYD+ AV+ ED GL N++ L+SYLRNRVPVL
Sbjct: 215 FRLPTILVGDGRLGGISSTLSAYETLLLRGYDISAVILEDRGLSNDMFLLSYLRNRVPVL 274
Query: 309 VLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQH 368
VLPP+P+D S+DL +W ES +VF LK+ + +S RIQRL M +++ +L WWPFTQH
Sbjct: 275 VLPPIPEDPSDDLTDWLSESSSVFGLLKDALQSFHSRRIQRLNSMQRKSKDLLWWPFTQH 334
Query: 369 KLVPEEAVTVIDSRCGENFSVYQDQKNKFIG-QQFDACASWWTQGPDATLQIELARDMGY 427
LVP ++VTVIDSRCGE+FS Y+ + NK + QFDACASWWTQGPD+ LQ+ELARDMGY
Sbjct: 335 NLVPVDSVTVIDSRCGESFSTYKVKDNKMMMIPQFDACASWWTQGPDSNLQMELARDMGY 394
Query: 428 TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487
A R+GHVMFPEN +EPAL CAELLL GVGK WASR Y+SDNGSTAIEIALKMAFRKFSF
Sbjct: 395 AAGRYGHVMFPENAHEPALRCAELLLGGVGKDWASRVYYSDNGSTAIEIALKMAFRKFSF 454
Query: 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547
DH +L+D T E+ I+LKVLAL+GSYHGDTLGAMEAQAPS YT FLQQPWYSGRGLF
Sbjct: 455 DHGILLDSDKSMTNERNIQLKVLALQGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGLF 514
Query: 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607
LDPPTVF+ N LSLP+ + + D S E+F RDSS A +YS+YISQ
Sbjct: 515 LDPPTVFIRNETCCLSLPQSIQHGHLSPGDKCIPSLAEVFCNTRDSSYAADLYSTYISQQ 574
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
L + + + ALIIEPV+ AGGMHM+DPLFQR+LVKEC+NRKIPVIFDEVFTGFW
Sbjct: 575 LSEYSLSSNTEHVAALIIEPVIQGAGGMHMIDPLFQRLLVKECRNRKIPVIFDEVFTGFW 634
Query: 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK----------- 716
RLGVE+ ++LLGC+PDIACY KL+TGG++PLAAT+ T VF++F DSK
Sbjct: 635 RLGVESASELLGCLPDIACYAKLMTGGIVPLAATVTTEGVFEAFKSDSKLTALLHGHSYT 694
Query: 717 ----------------------------------LWDLELIQQISSHRTVQRVVALGTLC 742
LWD L+ Q+SS V RVV+LGTLC
Sbjct: 695 AHAMGCSAAVKAIQWFRDPSTNLNLDLDRKRLKELWDGTLVNQLSSLPNVSRVVSLGTLC 754
Query: 743 AIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKL 801
AIEL+A G +AGY SLYA L+++LR ED +Y+RPLGNVIYLMCGPC++ + C++ L K+
Sbjct: 755 AIELKAEGSDAGYASLYARCLIQQLREEDDLYVRPLGNVIYLMCGPCTARDSCTEQLSKV 814
Query: 802 YQRLEEFDKVE 812
Y+R+ F+ V
Sbjct: 815 YRRISSFNPVH 825
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326517942|dbj|BAK07223.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/829 (56%), Positives = 576/829 (69%), Gaps = 73/829 (8%)
Query: 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRF 92
LPLS PTF ++ ANT +GKTLVSAGL++S L S ++ +YLKP+QTG+P DSD+ F
Sbjct: 23 LPLSSPTFAVFGANTGVGKTLVSAGLAASLLRS-HAAFPSAVLYLKPLQTGFPDDSDAGF 81
Query: 93 LFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREE 152
L+ ++P+L LR + + L S L + S + F YD
Sbjct: 82 LYRRVPAL-LRPSHAAHLAASIDTLSPAPSVETQSPSREEAAFS--------YD------ 126
Query: 153 NRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESE 212
GE ++ L C+TL+AW EAVSPHLAAERE G V D+ V L CL +G
Sbjct: 127 ----GEGEAVRKLLACRTLYAWREAVSPHLAAERE-GMAVEDAHVRSLLAACLVEG---- 177
Query: 213 SESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272
+G+ ++ +VETAGGVASPGPSG+LQCDLYR FRLP ILVGDGRLGGIS T+SAYE
Sbjct: 178 ENLGKGEGDVWKLVETAGGVASPGPSGTLQCDLYRQFRLPTILVGDGRLGGISCTLSAYE 237
Query: 273 SLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVF 332
+L LRGYDV AV+ EDHGL N L+SYLRNRVPVLVLPP+P+D S+DL +WF ES +VF
Sbjct: 238 TLLLRGYDVSAVILEDHGLSNNKFLLSYLRNRVPVLVLPPIPEDPSDDLTDWFSESSSVF 297
Query: 333 DSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQD 392
L++ + + RIQRL M +++ +L WWPFTQH LVP + VTVIDSRCGE+FS Y+
Sbjct: 298 GLLEDALRSFHLTRIQRLNSMQRKSKDLLWWPFTQHNLVPVDCVTVIDSRCGESFSAYKV 357
Query: 393 QKNKFIG-QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAEL 451
+ NK + QFDACASWWTQGPD+ LQIELARDMGY AAR+GHVMFPEN +EPAL CAEL
Sbjct: 358 KDNKMMMIPQFDACASWWTQGPDSKLQIELARDMGYAAARYGHVMFPENAHEPALRCAEL 417
Query: 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE-KCIELKVL 510
LL G+GK WASR Y+SDNGSTAIEIALKMAFRKFS D +L+D T + I+LKVL
Sbjct: 418 LLGGIGKDWASRVYYSDNGSTAIEIALKMAFRKFSLDRGILLDSDKSIITNGRNIQLKVL 477
Query: 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570
ALKGSYHGDTLGAMEAQAPS YT FLQQPWYSGRGLFLDPPTVF+ N LSLP+ + +
Sbjct: 478 ALKGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGLFLDPPTVFIKNGTCTLSLPQAIQN 537
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
+ D F S E+F + RDSS A +YS+YISQ L + + I ALIIEPV+
Sbjct: 538 CHLSPGDKCFPSLAEVFCKTRDSSSAADLYSTYISQQLSEYSLSSNTEHIAALIIEPVIQ 597
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGMHM+DPLFQR+LV EC++RKIPVIFDEVFTGFWRLGVE+ ++LLGC+PD+ACY KL
Sbjct: 598 GAGGMHMIDPLFQRVLVHECRDRKIPVIFDEVFTGFWRLGVESASELLGCLPDVACYAKL 657
Query: 691 LTGGVIPLAATLATNAVFDSFVGDSK---------------------------------- 716
+TGG++PLAAT+ T AVF++F DSK
Sbjct: 658 MTGGLVPLAATVTTEAVFEAFKSDSKLTALLHGHSYTAHAMGCSAAVKAIQWFRDPSTNS 717
Query: 717 -----------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLK 765
LWD L+ Q+SS V+R+V+LGTLCAIELQA G +AGY SLYA SL++
Sbjct: 718 NLDFDCMKLKELWDGTLVNQLSSLPNVKRIVSLGTLCAIELQAEGSDAGYASLYARSLIQ 777
Query: 766 KLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 813
+LR ED +Y+RPLGNVIYLMCGPC++ +VC++ L K+Y+R+ F+ V
Sbjct: 778 QLREEDDIYVRPLGNVIYLMCGPCTTRDVCTEQLSKVYRRISHFNPVHR 826
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B0F481 | BIODA_ARATH | 2, ., 6, ., 1, ., 6, 2 | 0.6577 | 0.9290 | 0.9123 | yes | no |
| Q6ZKV8 | BIODA_ORYSJ | 2, ., 6, ., 1, ., 6, 2 | 0.5477 | 0.9352 | 0.9317 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.3.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 818 | |||
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 0.0 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 1e-64 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 2e-60 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 4e-54 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-38 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 6e-33 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 3e-32 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 4e-31 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 2e-30 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 3e-29 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 2e-28 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 3e-28 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 3e-20 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 7e-18 | |
| pfam13500 | 197 | pfam13500, AAA_26, AAA domain | 2e-17 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 1e-16 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 3e-15 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 6e-14 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 2e-13 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 2e-13 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 2e-13 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 4e-13 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 4e-12 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 5e-12 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 8e-12 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 1e-11 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 6e-11 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 9e-11 | |
| PRK00090 | 222 | PRK00090, bioD, dithiobiotin synthetase; Reviewed | 2e-10 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 3e-10 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 4e-10 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 5e-09 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 6e-09 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 7e-09 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 8e-09 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 2e-08 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 2e-08 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 2e-08 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 1e-07 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 1e-07 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 1e-07 | |
| COG0132 | 223 | COG0132, BioD, Dethiobiotin synthetase [Coenzyme m | 2e-07 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 2e-07 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 3e-07 | |
| pfam13500 | 197 | pfam13500, AAA_26, AAA domain | 4e-07 | |
| TIGR00347 | 166 | TIGR00347, bioD, dethiobiotin synthase | 4e-07 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 5e-07 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 7e-07 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 8e-07 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 9e-07 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 9e-07 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 1e-06 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 1e-06 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 8e-06 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 1e-05 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 2e-05 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 2e-05 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 3e-05 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 4e-05 | |
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 4e-05 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 4e-05 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 5e-05 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 7e-05 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 9e-05 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 1e-04 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 1e-04 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 1e-04 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 2e-04 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 2e-04 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 2e-04 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 2e-04 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 3e-04 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 4e-04 | |
| cd03109 | 134 | cd03109, DTBS, Dethiobiotin synthetase (DTBS) is t | 5e-04 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 6e-04 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 7e-04 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 7e-04 | |
| COG0132 | 223 | COG0132, BioD, Dethiobiotin synthetase [Coenzyme m | 0.002 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 0.002 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 0.003 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 0.004 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 1182 bits (3060), Expect = 0.0
Identities = 475/844 (56%), Positives = 569/844 (67%), Gaps = 78/844 (9%)
Query: 14 RRILLRLFHHSTFHPQPL---DLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA 70
+L L LPLS P F +W ANT++GKTLVSAGL+++ +S
Sbjct: 1 LHMLRSLIGLRRRSSSSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAA-----AASR 55
Query: 71 NKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSS 130
+Y+KP+QTG+P DSD+RF+F K SLS R SL SN LF S AAKS L
Sbjct: 56 RSPVLYVKPVQTGFPDDSDARFVFRKADSLSRRS---ESLFASNRTLFLSPPAAKSALG- 111
Query: 131 RDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG 190
+N E ++ S L C TLFAW AVSPHLAA RE G
Sbjct: 112 ------GVSSMGAHAAVNAGAEAGVTS------SALWCHTLFAWRRAVSPHLAARRE-GR 158
Query: 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFR 250
V D +V+E + + LR+ +E G +L +VETAGGVASPGPSG+LQCDLYRP R
Sbjct: 159 GVSDDEVLEAVNRSLRE----VGANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLR 214
Query: 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVL 310
LP ILVGDGRLGGIS T++AYESL LRGYDVVAVV EDHGL NE L+SYL NRVPV VL
Sbjct: 215 LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVL 274
Query: 311 PPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKL 370
PP+P+D +DL EWFD+S + FD+L + + +S R+QRL MPK AGE+ WWPFTQH L
Sbjct: 275 PPVPEDPGDDLDEWFDDSKSTFDALLDALQSWHSGRLQRLQSMPKEAGEVLWWPFTQHAL 334
Query: 371 VPEEAVTVIDSRCGENFSVYQDQKN--KFIGQQFDACASWWTQGPDATLQIELARDMGYT 428
VP ++VTVIDSRCGE+FSVY+ + N I QQFDACASWWTQGPD TLQ ELAR + Y
Sbjct: 335 VPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYA 394
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A R+GHVMFPENV+EPAL AELLL G GKGWASR +FSDNGSTAIE+ALKMAFRKF D
Sbjct: 395 AGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVD 454
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
H L + + IELKVLAL GSYHGDTLGAMEAQAPS +TGFLQQPWYSGRGLFL
Sbjct: 455 HGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFL 514
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
DPPTV M N +W +SLPE S + ++ T+ SRDE+F + RDS+ LA Y SYI Q L
Sbjct: 515 DPPTVGMRNGRWNISLPEGFSSGLEG-EETTWESRDEVFDKTRDSTPLAKAYRSYIEQQL 573
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
+ +G I ALIIEPV+H AGGM ++DPLFQR LV+ C++RKIPVIFDEVFTG WR
Sbjct: 574 DEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWR 633
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK------------ 716
LGVE+ +LLGC PDIACY KLLTGG++PLAATLAT VF++F G SK
Sbjct: 634 LGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTA 693
Query: 717 ---------------------------------LWDLELIQQISSHRTVQRVVALGTLCA 743
LWD EL++ ISS V+RVV+LGT+ A
Sbjct: 694 HPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLA 753
Query: 744 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLY 802
+EL A G +GY SLYA S++++LR EDG+Y RPLGNV+YLMCGP +SPE C++LL K+Y
Sbjct: 754 LELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLGNVVYLMCGPTTSPETCTRLLRKVY 813
Query: 803 QRLE 806
+RL
Sbjct: 814 RRLS 817
|
Length = 817 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 221 bits (567), Expect = 1e-64
Identities = 131/497 (26%), Positives = 192/497 (38%), Gaps = 135/497 (27%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT--QG---PDAT 416
W P+TQ K I+ E +Y + ++I D +SWW G P
Sbjct: 2 WHPYTQMKD--ALPPLPIER--AEGVYLYDEDGREYI----DGISSWWVNIHGHNHP--- 50
Query: 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
E+ + + HVMF +EPA+E AE L++ +G + +FSD+GS A+E+
Sbjct: 51 ---EINAAIKEQLDKLEHVMFGGLTHEPAIELAERLVEITPEGLE-KVFFSDSGSVAVEV 106
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS----PY 532
ALKMA + + + K + LA + YHGDT GAM +
Sbjct: 107 ALKMALQYW----------QNQGRPGK---TRFLAFRNGYHGDTFGAMSVGDVGGFHALF 153
Query: 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592
L VF + C + + +
Sbjct: 154 EPLL-------------FEVVF------------------IPAPPCYRCWDPD----DCE 178
Query: 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652
+ LA++ + LL+ + I A I+EP+V AGGM P + R L + C
Sbjct: 179 AECLAAL------EALLEEHADE----IAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDE 228
Query: 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
+ +I DE+ TGF R G + G PDI C K LTGG +PLAATL T+ ++++F
Sbjct: 229 YGVLLIADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFY 288
Query: 713 GDS-------------------------KLWD----LELIQQIS-----------SHRTV 732
D L + LE + +I H V
Sbjct: 289 SDDEGKAFMHGHTYTGNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGLAPLRDHPGV 348
Query: 733 QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP--CSS 790
V LG + A+EL + + E GV +RPLGNVIYLM P +
Sbjct: 349 ADVRVLGAIGAVELVRDVEPYIGAKIQ-----QFFLERGVLLRPLGNVIYLM--PPYIIT 401
Query: 791 PEVCSQLLLKLYQRLEE 807
E L KL ++E
Sbjct: 402 DEE----LEKLTAAIKE 414
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 2e-60
Identities = 127/486 (26%), Positives = 178/486 (36%), Gaps = 146/486 (30%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIEL 421
W P+TQ KL I E +Y + I DA +SWW AT
Sbjct: 13 WHPYTQMKL--HPPPIPIVR--AEGAYLYLADGRELI----DAISSWWV----ATH---- 56
Query: 422 ARDMGY-----------TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
G+ R HV+F +EPA A+ L+ G +FSD+G
Sbjct: 57 ----GHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGL-DHVFFSDSG 111
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----EA 526
S A+E+ALKMA + + + + + L+L+G YHGDT+G M
Sbjct: 112 SVAVEVALKMALQYW----------RNRGEPGRS---RFLSLRGGYHGDTIGTMSVGDRG 158
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
+ YT L + + P D
Sbjct: 159 GMHALYTPLLFEQ------VTAPFP-------------------------------PDG- 180
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
YE+ L ++ + +G I A I+EP+V AGGM DP + L
Sbjct: 181 -YEQATLDALEALLEKH-------------AGEIAAFIVEPLVQGAGGMLFYDPRYLAEL 226
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C + +IFDE+ TGF R G + G PDI C K LTGG +PLAATL T
Sbjct: 227 RRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAE 286
Query: 707 VFDSFVGDS-------------------------KLWD----LELIQQISS--------- 728
+F++F D L++ LE + +S+
Sbjct: 287 IFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPF 346
Query: 729 --HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCG 786
V V LG + A+EL +L E GV +RPLGN IYLM
Sbjct: 347 RDLPGVADVRVLGAIGAVELD-----RPVLERDGPALRAFALERGVLLRPLGNTIYLMPP 401
Query: 787 PCSSPE 792
+ E
Sbjct: 402 YIITAE 407
|
Length = 423 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 4e-54
Identities = 124/501 (24%), Positives = 195/501 (38%), Gaps = 118/501 (23%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL--- 417
W PFTQ + P VI E + +++ D + W
Sbjct: 13 LWHPFTQMRD-PLAEPRVIVR--AEGVYLTDIDGRRYL----DGMSGLWC----VNHGHG 61
Query: 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
+ E+A + + HVMF +EPA+E AE L + +G +F+D+GS A+E A
Sbjct: 62 RPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETA 121
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-----EAQAPSPY 532
LKMA + + + ++ K ++ + YHGDTLGAM A + Y
Sbjct: 122 LKMALQYW----------RARGQPQRK---KFISRRNGYHGDTLGAMSVGGPVALRHAFY 168
Query: 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592
L L L P + E+
Sbjct: 169 DPLLP------EVLHLPAPYAYRRGFFG-EGDEEFA----------------------EA 199
Query: 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652
+ +L ++ I ++ + I A I+EPVV AGGM + P + + + + C
Sbjct: 200 ADELEAL----ILEHGPET--------IAAFIVEPVVGGAGGMLVPPPGYLKRVREICDK 247
Query: 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
I +I DEV TGF R G + G VPDI C K LTGG +PL+A L ++ ++++F
Sbjct: 248 YGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFS 307
Query: 713 GDS------------------------KLWDLE-LIQQIS---------------SHRTV 732
+ + E L+++++ H V
Sbjct: 308 DGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLV 367
Query: 733 QRVVALGTLCAIELQA-AGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP--CS 789
V LG + AIEL A + + A + E G+ +RPLG+VIYLM P
Sbjct: 368 GDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLGDVIYLM--PPLII 425
Query: 790 SPEVCSQLLLKLYQRLEEFDK 810
+ E +L+ L + L+E
Sbjct: 426 TREEIDELVDALREALDETLA 446
|
Length = 449 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-38
Identities = 106/454 (23%), Positives = 166/454 (36%), Gaps = 119/454 (26%)
Query: 395 NKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
N+++ D + P E+ + A+ H EPA+E A
Sbjct: 36 NRYL----DFLSGIGVLNLGHNHP------EVVEALKEQLAKLTHFSLGFFYNEPAVELA 85
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL +G + +F ++G+ A+E ALK+A R ++ G+ K+
Sbjct: 86 ELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYT----------GRK--------KI 125
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
++ +G+YHG TLGA+ Y RG F LP L+
Sbjct: 126 ISFEGAYHGRTLGALSLTGSKKY-----------RGGFGPL-------------LPGVLH 161
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
+ + R + DL ++ + L+ +V A+I+EP+
Sbjct: 162 --------VPYPYRY--RPPAELADDLEAL------EEALEEHPEEV----AAVIVEPIQ 201
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
GG+ + P + + L + C+ I +I DEV TGF R G + G PDI GK
Sbjct: 202 -GEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGK 260
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDS----------------------KLWDLELIQQI- 726
L GG+ PL A L + D+F L + L++
Sbjct: 261 GLGGGL-PLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAA 319
Query: 727 --------------SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV 772
H V V G + IEL AA ++K E G+
Sbjct: 320 ELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGL 379
Query: 773 YMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805
+RP G NVI L+ + E + L L + L
Sbjct: 380 LLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 6e-33
Identities = 131/484 (27%), Positives = 194/484 (40%), Gaps = 110/484 (22%)
Query: 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--- 411
+R + W P TQ + P V +R GE + +++ DA +SWWT
Sbjct: 25 QRDLAVLWHPCTQMREHPHTLPLVPIAR-GEGAWLVGHDGRRYL----DAVSSWWTNLFG 79
Query: 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL----QGVGKGWASRAYFS 467
+ + +A A VM +EPA++ AE LL + G+ S+ +++
Sbjct: 80 HAEPRIGAAIAAQ----AGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYA 135
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
DNGS +E+ALKMAF F E + T + +AL+ YHG+T+GA+
Sbjct: 136 DNGSAGVEVALKMAFHYFHNRGE------HRRT-------RFIALENGYHGETIGALAVG 182
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
D P +Y + L E L++ S D
Sbjct: 183 ---------------------DIP---LYRRVYAPLLLESLFAP----------SPDAYL 208
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647
E S++ ++ ++ Q L + + G I ALI+EP + AGGM M P + R
Sbjct: 209 AEPGQSAEDYALQAADALQALFE----QSPGEICALILEPRLQCAGGMRMHHPAYLRRAR 264
Query: 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ C +I DE+ TGF R G + G +PD+ C K LTGG +PL+A LAT +
Sbjct: 265 ELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQL 324
Query: 708 FDSFVGDSK--------------------LWDL--------------------ELIQQIS 727
+D+F+ DS+ L L +L QI
Sbjct: 325 YDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIG 384
Query: 728 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR---EDGVYMRPLGNVIYLM 784
H V V G + A EL G A L R GV +RPLG+V+Y M
Sbjct: 385 EHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLGDVLYWM 444
Query: 785 CGPC 788
C
Sbjct: 445 PPYC 448
|
Length = 472 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-32
Identities = 128/465 (27%), Positives = 195/465 (41%), Gaps = 138/465 (29%)
Query: 399 GQQF-DACASWWTQGPDATLQIELARDMGYTAARF-----------GHVMFPENVYEPAL 446
G++ D +SWW A L GY R H+MF +EPA+
Sbjct: 43 GRRLIDGMSSWW-----AALH-------GYNHPRLNAAATNQLAKMSHIMFGGFTHEPAV 90
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
E A+ LL+ + ++ +F+D+GS A+E+A+KMA + + K ++
Sbjct: 91 ELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMALQ---YQQ-------AKGEVQRT-- 137
Query: 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
K ++ YHGDT AM P TG GLF SLP
Sbjct: 138 -KFATIRSGYHGDTWHAM--SVCDPVTGM--------HGLFNH-------------SLP- 172
Query: 567 WLYSKIVEHKDITFCSRDEI-FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625
V++ F + I F EE + + + Q+LL+ G + I ALI+
Sbjct: 173 ------VQY----FLPQPSIKFGEEWNDEAIEPL------QDLLEQKGDE----IAALIL 212
Query: 626 EPVVHAAGGMHMVDPLFQRILVKE---CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP 682
EPVV AGGM+ P + LVK C + +IFDE+ TGF R G + G VP
Sbjct: 213 EPVVQGAGGMYFYSPTY---LVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVP 269
Query: 683 DIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKL------------------------ 717
DI C GK LTGG + L+AT+ T A+ + G++K
Sbjct: 270 DIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLL 329
Query: 718 ----WDLELIQQI-----------SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAAS 762
W + IQ+I + +V V LG + +E++ + A+
Sbjct: 330 LESPW-QQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEP--------VNMAT 380
Query: 763 LLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807
L + E G+++RP G ++Y+M SP+ SQL L + L++
Sbjct: 381 LQPRFVEHGIWVRPFGKLVYIMPPFIISPDELSQLTSGLLRVLKQ 425
|
Length = 429 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-31
Identities = 89/373 (23%), Positives = 130/373 (34%), Gaps = 94/373 (25%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWT--QG---PDATLQIELARDMGYTAARFGHVMFP 438
+ +Y +++ D + G P ++ + + A + H F
Sbjct: 5 AKGVWLYDVDGRRYL----DFLSGIAVVNLGHCHP------KIVQAVKEQADKLTHTSFR 54
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
EPAL+ AE L Q G R +F ++GS A E A+K+A +
Sbjct: 55 AFTTEPALQLAEKLAQLTPGG-LDRVFFMNSGSEANETAIKLARQYAKKKGA-------- 105
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
T K K++A G +HG TLGA+ S Y G G L
Sbjct: 106 --TGKT---KIIAFSGGFHGRTLGALSVTGSSGY--------KKGFGPSLP--------- 143
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
+ LP E +LA + + +
Sbjct: 144 -GVYFLP--------------------YPDLEAAEEELACADEALRLIKAVHDDN----- 177
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I A+I+EP+ GG+ P F L + C+ + +I DEV TGF R G +
Sbjct: 178 -IAAVIVEPI-QGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHY 235
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLWDLELIQQISSHRT------V 732
G PDI K LTGG +PL+A LAT + +F SH +
Sbjct: 236 GVTPDIMTLAKALTGG-LPLSAVLATAEIMQAF-------------HPGSHGGTFGGNPL 281
Query: 733 QRVVALGTLCAIE 745
AL L IE
Sbjct: 282 ACAAALAVLDIIE 294
|
Length = 338 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-30
Identities = 117/450 (26%), Positives = 170/450 (37%), Gaps = 138/450 (30%)
Query: 403 DACASWWTQGPDATLQ----IELARDMGYTAARFGHVMFPENVYEPALE-CAELL----- 452
D +SWW A + +L M HVMF + PA+E C +L+
Sbjct: 47 DGMSSWW-----AAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQ 101
Query: 453 -LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511
L+ V + +D+GS A+E+A+KMA + + E + L
Sbjct: 102 PLECV--------FLADSGSVAVEVAMKMALQYWQAKGEP--------------RQRFLT 139
Query: 512 LKGSYHGDTLGAMEAQAP-----SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
L+ YHGDT GAM P S Y G+L + LF P
Sbjct: 140 LRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPE------NLFAPAPQ-------------- 179
Query: 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626
SR F E D D+A ++ ++ + I A+I+E
Sbjct: 180 ---------------SR---FDGEWDERDIAP-FARLMAAH---------RHEIAAVILE 211
Query: 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC 686
P+V AGGM + P + + + K C I +I DE+ TGF R G + G PDI C
Sbjct: 212 PIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILC 271
Query: 687 YGKLLTGGVIPLAATLATNAVFD--------------SFVGD---------------SKL 717
GK LTGG + L+ATL T V + +F+G+ S
Sbjct: 272 LGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGD 331
Query: 718 WDL----------ELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKL 767
W E + + V V LG + +E + A+L +
Sbjct: 332 WQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTR--------PVNMAALQRFF 383
Query: 768 REDGVYMRPLGNVIYLMCGPCSSPEVCSQL 797
E GV++RP G +IYLM PE +L
Sbjct: 384 VEQGVWIRPFGKLIYLMPPYIILPEQLQRL 413
|
Length = 428 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 3e-29
Identities = 126/485 (25%), Positives = 193/485 (39%), Gaps = 123/485 (25%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--GPDATLQI 419
W P TQ K E + +I R GE + + +++ DA +SWW G A +I
Sbjct: 16 WHPCTQMK--DHEQLPLIPIRRGEGVWLEDFEGKRYL----DAVSSWWVNVFG-HANPRI 68
Query: 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479
+ + HV+ +EP +E +E L++ G SR +++DNGS+AIE+ALK
Sbjct: 69 NQR--IKDQVDQLEHVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALK 125
Query: 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539
M+F + + K + + L SYHG+TL AM + +T
Sbjct: 126 MSFHYW----------RNRGKPRK---KRFVTLTNSYHGETLAAMSVGDVALFTE----- 167
Query: 540 WYSGRGLFLDPPTVFMYNSKWILSLPE---WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596
+ + L LD V S PE W EH F ++ E D
Sbjct: 168 --TYKPLLLDTIKV---PSPDCYLRPEGMSW-----EEHSRRMFAHMEQTLAEHHDE--- 214
Query: 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656
I A+I+EP++ AGGM M P++ ++L + C +
Sbjct: 215 -----------------------IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVH 251
Query: 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD------- 709
+I DE+ GF R G + G PD C K LTGG +PLAA L T+ V+
Sbjct: 252 LIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYP 311
Query: 710 ---------SFVGD-----SKLWDLELIQQ--------------------ISSHRTVQRV 735
S+ G+ + L L++ +Q ++ H V V
Sbjct: 312 TLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEV 371
Query: 736 VALGTLCAIEL-QAAGCNAGYG-------SLYAASLLKKLREDGVYMRPLGNVIYLMCGP 787
G + AIE+ Q Y +Y +L E G +RPLG+V+Y +
Sbjct: 372 RQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHAL-----ERGALLRPLGSVVYFLPPY 426
Query: 788 CSSPE 792
+PE
Sbjct: 427 VITPE 431
|
Length = 466 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 2e-28
Identities = 125/529 (23%), Positives = 203/529 (38%), Gaps = 132/529 (24%)
Query: 334 SLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQ 393
S + Y E ++ W PFTQ K EE +I+ GE +Y
Sbjct: 4 STTDKPSYTYEELSEK-------NKAYVWHPFTQMKDYLEEDPLIIER--GEGRKLYDVN 54
Query: 394 KNKFIGQQFDACASWWT-----QGP--DATLQIELARDMGYTAARFGHVMFPENVYEPAL 446
N++ +D +S W Q P D ++ +L + T +V P++
Sbjct: 55 GNEY----YDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANV--------PSI 102
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
AE L++ V +G + ++SD+G+TA+EIA+KMAF+ + GK ++ +
Sbjct: 103 LLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMAFQYWQ--------NKGKPKKQRFV- 152
Query: 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
LK +YHGDT+GA+ A LF + ++ + + P
Sbjct: 153 ----TLKNAYHGDTIGAVSVGAID---------------LFHQVYSSLLFEA-IKMPYPY 192
Query: 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626
S K + E + LL+ +++ I +E
Sbjct: 193 TYRSPYGNDKAEI---VKKHLEELEE---------------LLKEKHEEIAAII----VE 230
Query: 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC 686
P+V AGGM + + + L C + I DEV TGF R G + PDI
Sbjct: 231 PLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT 290
Query: 687 YGKLLTGGVIPLAATLATNAVFDSFVGD---------------------SKLWDLEL--- 722
GK LTGG +P+A T+ T+ ++++F GD L +LEL
Sbjct: 291 AGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEK 350
Query: 723 ---IQQISSHRT--------------VQRVVALGTLCAIEL-QAAGCNAGY------GSL 758
I+Q++ V + LG + IEL + + G
Sbjct: 351 TNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVG-- 408
Query: 759 YAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807
+ RE G+ RPLGN I M S+ + ++L LY+ + +
Sbjct: 409 VQVCK--RSRELGMLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISD 455
|
Length = 460 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 3e-28
Identities = 90/320 (28%), Positives = 122/320 (38%), Gaps = 84/320 (26%)
Query: 403 DACASWWTQG---------PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453
DA +SWW+ A QI+ HVMF +EPA++ LL
Sbjct: 44 DAMSSWWSAAHGHGHPRLKAAAHKQID----------TMSHVMFGGLTHEPAIKLTRKLL 93
Query: 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513
G ++SD+GS ++E+A+KMA ++S G+ E+ ++L +
Sbjct: 94 NLTDNGL-DHVFYSDSGSVSVEVAIKMAL-QYS---------KGQGHPERT---RLLTWR 139
Query: 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR---GLFLDPPTVFMYNSKWILSLPEWLYS 570
YHGDT AM P G + W G +F P P
Sbjct: 140 SGYHGDTFAAMSVCDPE---GGMHSLW-KGTLPEQIFAPAP-------------PVR--- 179
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
S EI S L S+ I + + A+IIEP+V
Sbjct: 180 ---------GSSPQEI------SEYLRSL-ELLIDET------------VAAIIIEPIVQ 211
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGM D + C I +I DE+ TGF R G G PDI C GK
Sbjct: 212 GAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKA 271
Query: 691 LTGGVIPLAATLATNAVFDS 710
LTGG + AATL T+ V
Sbjct: 272 LTGGFMSFAATLCTDKVAQL 291
|
Length = 422 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 3e-20
Identities = 69/290 (23%), Positives = 102/290 (35%), Gaps = 65/290 (22%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A+ H + YEP +E AE L + +F ++G+ A+E A+K+A R ++
Sbjct: 85 LAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR 143
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
V+A G++HG TLGA+ P P+ +G G
Sbjct: 144 P------------------GVIAFDGAFHGRTLGALSLTGSKP-------PYKAGFGPLP 178
Query: 549 DPPTVFMY-NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607
Y N + D +F E ++A
Sbjct: 179 PGVYHVPYPNPY----RCPFGIGGEECGDDALEYIERALFDLEVGPEEVA---------- 224
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
A+IIEP+ G + + L K C+ I +I DEV TGF
Sbjct: 225 --------------AIIIEPIQGEGGIIVPPKGFLKA-LRKLCREHGILLIADEVQTGFG 269
Query: 668 RLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713
R G E G PDI K L GG +PL+A + + D G
Sbjct: 270 RTGKMFAFEHF----GVEPDIVTLAKSLGGG-LPLSAVVGRAEIMDWPPG 314
|
Length = 447 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 7e-18
Identities = 94/398 (23%), Positives = 147/398 (36%), Gaps = 107/398 (26%)
Query: 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496
F + A+E + L+ R +FS GS ++E ALK+A R++ +V
Sbjct: 80 FDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQY---WKVR---- 131
Query: 497 GK-DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY-TGFLQQPWYSGRGLFLDPPTVF 554
G+ + T K ++LK YHG G + + + +P G T +
Sbjct: 132 GQPERT------KFISLKQGYHGTHFGGASVNGNTVFRRNY--EPLLPG---CFHVETPW 180
Query: 555 MYNSKWILSLPEWLYSKIVEHKDITFCSR---DEIFYEERDSSDLASIYSSYISQNLLQN 611
+Y + + PE ++ C+R EI ++ D+
Sbjct: 181 LYRNPFTEQDPE----ELARI-----CARLLEREIAFQGPDT------------------ 213
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLG 670
I A I EPV AGG+ +V P LV+E C I +I DEV TGF R G
Sbjct: 214 --------IAAFIAEPV-QGAGGV-IVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG 263
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-------------- 716
+ G PDI C K +T G +PL AT+ + D+F ++
Sbjct: 264 SWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGH 323
Query: 717 -------LWDLELIQQ---------------------ISSHRTVQRVVALGTLCAIEL-- 746
L L+++ + V V G + A++L
Sbjct: 324 PVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVA 383
Query: 747 -QAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYL 783
+A YA ++ RE+GV +RP G I L
Sbjct: 384 DKATREPIDPSKGYANAVADVARENGVLVRPSGTKIIL 421
|
Length = 449 |
| >gnl|CDD|222178 pfam13500, AAA_26, AAA domain | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 155 ISGEEDSSVSELVCKTL-----------FAWEEAVSPHLAAERESGGVVGD-SKVIETLG 202
SG D SELV + L + +SPHLAA E GV D K+++ L
Sbjct: 38 QSGLVDDGDSELVKRLLGLDQTREHPEPYRLSAPLSPHLAARLE--GVTIDLEKIVKKLP 95
Query: 203 KCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG 262
K + L +VE AGG+ P L D+ LP ILV G LG
Sbjct: 96 KDA---------------DPL-VVEGAGGLMVPLNENLLNIDIAANLGLPVILVARGGLG 139
Query: 263 GISGTISAYESLKLRGYDVVAVVF-EDHGLVNEVPLMSYLRNRVPVL-VLPPLPQ 315
I+ T+ E+L+ RG +++ V+ N + ++ + VPVL V+P LP
Sbjct: 140 TINHTLLTIEALRSRGINILGVILNGVPNPANVEAIEAF--SGVPVLGVIPYLPD 192
|
This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif. Length = 197 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-16
Identities = 76/291 (26%), Positives = 113/291 (38%), Gaps = 95/291 (32%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + HV N++ EP E AE L++ +A R +F ++G+ A E ALK+A RK++
Sbjct: 71 AEKLWHV---SNLFYNEPQAELAEKLVELSP--FADRVFFCNSGAEANEAALKLA-RKYT 124
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
D E + K++A + S+HG TLGA+ A TG QP Y
Sbjct: 125 GDPE---------------KSKIIAFENSFHGRTLGALSA------TG---QPKYRKGFG 160
Query: 547 FLDPPTVFM-YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605
L P + +N D+ ++ + I
Sbjct: 161 PLLPGFRHVPFN-------------------------------------DIEAL-EAAID 182
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
++ A+I+EP+ GG+ P F + L + C +I DEV TG
Sbjct: 183 ED------------TAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTG 229
Query: 666 FWRLGVETTADLLGC-----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
R T L PDI K L GG P+ A LAT + +F
Sbjct: 230 LGR-----TGKLFAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEIASAF 274
|
Length = 404 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 3e-15
Identities = 71/278 (25%), Positives = 106/278 (38%), Gaps = 80/278 (28%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N+Y EP E AE L V + +F ++G+ A E A+K+A RK+ H+
Sbjct: 76 NLYYIEPQEELAEKL---VELSGMDKVFFCNSGAEANEAAIKLA-RKYG--HKKG----- 124
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557
+ +++ + S+HG TL + A TG QP Y + F F+Y
Sbjct: 125 ------IEKPEIITAENSFHGRTLATLSA------TG---QPKY--QEGFEPLVEGFIY- 166
Query: 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
V DI ++ + ++
Sbjct: 167 ---------------VPFNDI------------------EALKA-------------AIT 180
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
A+++EP+ GG++ D + + L + C I +I DEV TG R G
Sbjct: 181 DKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQH 239
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GD 714
G PDI K L GGV P+ A LA V D F GD
Sbjct: 240 YGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGD 276
|
Length = 396 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 6e-14
Identities = 80/290 (27%), Positives = 114/290 (39%), Gaps = 85/290 (29%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
+ HV N+Y EP E AE L V A R +F ++G+ A E ALK+A RK++
Sbjct: 56 LEKLVHV---SNLYYTEPQEELAEKL---VEHSGADRVFFCNSGAEANEAALKLA-RKYT 108
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
G EK K++A + S+HG T+GA+ A Y Q+ +
Sbjct: 109 ----------GDKGKEKK---KIIAFENSFHGRTMGALSATGQPKY----QKGFEP---- 147
Query: 547 FLDPPTVFM-YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605
L P + YN E L I +
Sbjct: 148 -LVPGFSYAPYND------IESLKKAIDDE------------------------------ 170
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
A+I+EP+ GG++ F + L + C+++ +IFDEV TG
Sbjct: 171 --------------TAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTG 215
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
R G + G PDI K L GGV P+ ATLA V ++F GD
Sbjct: 216 IGRTGKFFAYEHYGIEPDIITLAKGLGGGV-PIGATLAKEEVAEAFTPGD 264
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-13
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 620 IGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I+EP+ +AG + V P QR L + C I +IFDEV TGF RLG A+
Sbjct: 219 IAAVIVEPMAGSAGVL--VPPKGYLQR-LREICDKHGILLIFDEVITGFGRLGAAFAAER 275
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
G PDI + K LT G IP+ A +A++ ++D+F+
Sbjct: 276 FGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFM 310
|
Length = 445 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-13
Identities = 96/393 (24%), Positives = 141/393 (35%), Gaps = 108/393 (27%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
+ H F YEP LE E + Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIA--------- 122
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T++ V+A G+YHG T + TG + P+ +G GL P
Sbjct: 123 -------RAATKRS---GVIAFTGAYHGRTHYTLA------LTGKVN-PYSAGMGLM--P 163
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
V+ P L+ + E D S + IF + D+A+I
Sbjct: 164 GHVYR------ALYPCPLHG-VSE--DDAIASIERIFKNDAAPEDIAAI----------- 203
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
IIEPV GG + P F + L C I +I DEV TG R G
Sbjct: 204 -------------IIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG 249
Query: 671 VETTADLLGCVPDIACYGKLLTGGV----------------------------IPLAATL 702
+ +G D+ + K + GG I AA L
Sbjct: 250 TLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAAL 309
Query: 703 ATNAVFD--------SFVGDSKLWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG 754
A VF+ + +G+ L I H + V LG + AIEL G ++
Sbjct: 310 AVLKVFEQENLLQKANALGEKLKDGLLAIA--EKHPEIGDVRGLGAMIAIELFEDGDHSK 367
Query: 755 YGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 787
+ A ++ + R+ G +I L CGP
Sbjct: 368 PNAKLTAQIVARARDKG--------LILLSCGP 392
|
Length = 425 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-13
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 43/208 (20%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+G I ALI+EP+V A GM M DP + R L C + +I DE+ G R G +
Sbjct: 219 AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACE 278
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD--------------------SK 716
G PD C K ++GG +PL+ L+ +A+F +F D +
Sbjct: 279 QAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAA 338
Query: 717 LWDLELIQQ--------------------ISSHRTVQRVVALGTLCAIELQAAGCNAGYG 756
L L+L + +++H V+ + GT+ A + +
Sbjct: 339 LATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFD---VALDGDAA 395
Query: 757 SLYAASLLKKLREDGVYMRPLGNVIYLM 784
++ + E + +RP+G +YLM
Sbjct: 396 RTFSRRFFEAALERELLLRPIGTTVYLM 423
|
Length = 453 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 4e-13
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EPV + G + QR L + C I +IFDEV TGF RLG A G
Sbjct: 216 IAAVIVEPVAGSTGVLIPPKGYLQR-LREICDKHGILLIFDEVITGFGRLGAPFAAQYFG 274
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713
PD+ K LT G IP+ A ++ + D+F+
Sbjct: 275 VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQ 308
|
Length = 442 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-12
Identities = 73/268 (27%), Positives = 109/268 (40%), Gaps = 57/268 (21%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EPA + A+ L G + ++F ++GS A E A+K+A + F +
Sbjct: 74 EPAEKLAKKLSDLSP-GDLNWSFFVNSGSEANETAMKIAIQHFQ----------ERGIQG 122
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562
K K+L+ SYHG T+GA+ +G + L D PT+
Sbjct: 123 KH---KILSRWMSYHGITMGALS------MSGHPLRR-QRFVSLLEDYPTI--------- 163
Query: 563 SLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622
S P +C R + + LA + ++ G + I A
Sbjct: 164 SAP--------------YCYRCP-VQKVYPTCQLACATEL---ETAIERIG---AEHIAA 202
Query: 623 LIIEPVVHAAGGMHMVDP--LFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I EP++ AAG +V P ++ I KE C + I I DEV TG R G + G
Sbjct: 203 FIAEPIIGAAGAA-VVPPKGYYKVI--KEICDHYDILFIADEVMTGLGRTGAMFAMEHWG 259
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAV 707
PDI GK L G P+AAT+ ++ V
Sbjct: 260 VEPDIMTLGKGLGAGYTPIAATVVSDRV 287
|
Length = 447 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 5e-12
Identities = 69/283 (24%), Positives = 118/283 (41%), Gaps = 70/283 (24%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A +F H + YEPA+E AE L++ G+ + +F+++G+ + E A+K+A ++
Sbjct: 83 AEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIA--RYHTG 140
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ ++ FLG ++HG T G++ A P +Q+ +G F
Sbjct: 141 RKYIIAFLG-----------------AFHGRTYGSLSLTASKP----VQR-----KGFFP 174
Query: 549 DPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602
P V Y + W + PE + +++ + D +F + ++A
Sbjct: 175 LMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIE------DYLFKKLVPPEEVA----- 223
Query: 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFD 660
A+I+EP+ GG ++V P F+ L K I +I D
Sbjct: 224 -------------------AIIVEPI-QGEGG-YVVPPKNFFKE-LRKLADKYGILLIDD 261
Query: 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703
EV TG R G + G PDI K + GG +PL A +
Sbjct: 262 EVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIG 303
|
Length = 441 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 8e-12
Identities = 87/343 (25%), Positives = 127/343 (37%), Gaps = 103/343 (30%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
E A+ECAE L + G G +R F+ G++AI +ALK+A R + +
Sbjct: 113 ETAIECAEKLTEIAG-GELNRVLFAPGGTSAIGMALKLA-RHITGNF------------- 157
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562
KV++L S+HG +L A+ G F M
Sbjct: 158 -----KVVSLWDSFHGASLDAISV---------------GGEACFRQGMGPLMAG----- 192
Query: 563 SLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI-YSSYISQNLLQNPGLKVSGCIG 621
VE R + + D SD+ Y Y+ ++ G IG
Sbjct: 193 ----------VERIPPAVSYRG--AFPDADGSDVHYADYLEYV---------IEKEGGIG 231
Query: 622 ALIIEPVVHAAGGMHMVDP--LFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLL 678
A I E V + V ++R V+E C + +I DE+ G R G T
Sbjct: 232 AFIAEAVRNTD---VQVPSKAYWKR--VREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLWDLELIQQIS-SHRTVQR--- 734
G PDI C GK L GG++P+AA + + QIS H T ++
Sbjct: 287 GIEPDILCIGKGLGGGLVPIAAMITKDK-------------YNTAAQISLGHYTHEKSPL 333
Query: 735 --VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR 775
AL T+ IE G LL+K++ D +MR
Sbjct: 334 GCAAALATIEVIE------QEG--------LLEKVKADSQFMR 362
|
Length = 459 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 73/270 (27%), Positives = 109/270 (40%), Gaps = 61/270 (22%)
Query: 438 PENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495
P V YE L+ AE L + G +FS++G+ AIE ALK+A
Sbjct: 79 PSGVIYYESILKLAEEL-AEITPGGLDCFFFSNSGAEAIEGALKLA-------------- 123
Query: 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGFLQQPWYSGRGLFLDPPTVF 554
K T++ +++ G +HG TLGA+ S Y + QP L
Sbjct: 124 --KHVTKR---PYIISFTGCFHGRTLGALSVTTSKSKYRKY-YQP--------LLGSVYQ 169
Query: 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614
P + + +D C + + DL S++ ++
Sbjct: 170 ---------APYPYCDRCPKGEDPEVCFLECL-------RDLESLFKHQVTPEE------ 207
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+IIEPV+ GG + F + L + C I +IFDEV TGF R G
Sbjct: 208 -----VAAVIIEPVL-GEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA 261
Query: 675 ADLLGCVPDIACYGKLLTGGVIPLAATLAT 704
A G VPDI K + G +PL+A +A+
Sbjct: 262 AQTFGVVPDIMTIAKGIASG-LPLSAVVAS 290
|
Length = 433 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 6e-11
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 34/156 (21%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F L + +IFDEV TGF R+ + +
Sbjct: 196 IAGVIVEPV---AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEY 251
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLWDLELIQQISSHRTVQRVVA 737
G PD+ GK++ GG +P+ A F G E++++++ V +
Sbjct: 252 FGVEPDLTTLGKIIGGG-LPVGA----------FGGRR-----EIMERLAPEGPVYQA-- 293
Query: 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY 773
GTL L A AG + LK L E+GVY
Sbjct: 294 -GTLSGNPLAMA---AGLAT------LKLLDEEGVY 319
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 9e-11
Identities = 47/166 (28%), Positives = 68/166 (40%), Gaps = 35/166 (21%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
I A+I+EPV G +V P F L + + +IFDEV TGF R+ +
Sbjct: 199 DDIAAVIVEPVAGNMG---VVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQ 254
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLWDLELIQQISSHRTVQRV 735
G PD+ GK++ GG+ P+ A G E+++Q++ V
Sbjct: 255 GYYGVEPDLTTLGKIIGGGL-PIGA-----------FGGRA----EIMEQLAPL---GPV 295
Query: 736 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY--MRPLGN 779
GTL L A AG +L E+GVY + LG
Sbjct: 296 YQAGTLSGNPLAMA---AGLATLEELM-----TEEGVYERLDALGE 333
|
Length = 432 |
| >gnl|CDD|234625 PRK00090, bioD, dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 30/182 (16%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R+SG E V + +EE +SPHLAA E GV D +E + LR L +
Sbjct: 55 RLSGLPLDY--EDVN--PYRFEEPLSPHLAAALE--GVAID---LEKISAALRR-LAQQY 104
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+ L +VE AGG+ P DL + +LP ILV +LG I+ T+ E+
Sbjct: 105 D--------LVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEA 156
Query: 274 LKLRGYDVVAVVFEDHGLVNEVPL------MSYLRNR--VPVL-VLPPLPQDSSNDLMEW 324
++ RG + V + P ++ L P+L LP L + E+
Sbjct: 157 IRARGLPLAGWVA---NGIPPEPGLRHAENLATLERLLPAPLLGELPYLAEAELAAAAEY 213
Query: 325 FD 326
D
Sbjct: 214 LD 215
|
Length = 222 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP+ GG+ + + + K C +I DEV TG R G +
Sbjct: 232 VAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHEN 290
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
PDI C K L GGV+P+ AT+AT VF
Sbjct: 291 VQPDILCLAKALGGGVMPIGATIATEEVFSVLF 323
|
Length = 459 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-10
Identities = 84/367 (22%), Positives = 134/367 (36%), Gaps = 100/367 (27%)
Query: 364 PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT----QGPDATLQI 419
PF+ K + E+ VI E ++ + NK + D A W G
Sbjct: 21 PFSDMKALNEKGSRVITR--AEGVYLWDSEGNKIL----DGMAGLWCVNVGYGRK----- 69
Query: 420 ELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
ELA D R + + F + + PA+E A L + G+ + +F+++GS A +
Sbjct: 70 ELA-DAAARQMRELPYYNTFF-KTTHPPAIELAAKLAEVAPPGF-NHVFFTNSGSEANDT 126
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--------MEAQA 528
L+M + GK +K + +++ K YHG T+ M Q
Sbjct: 127 VLRMVRHYW--------ALKGK--PQKKV---IISRKNGYHGSTVAGASLGGMKYMHEQG 173
Query: 529 PSPYTGF--LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
P G + QP++ G G + P ++ L+ L +KI+E
Sbjct: 174 DLPIPGIVHIDQPYWFGEGGDMTPE-------EFGLAAARQLEAKILE------------ 214
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD----PLF 642
+ + A I EP+ AGG+ + P
Sbjct: 215 LGADN----------------------------VAAFIGEPI-QGAGGVIIPPATYWPEI 245
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
QRI C+ I ++ DEV GF R G + G PD+ K LT G IP+ A
Sbjct: 246 QRI----CRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVG 301
Query: 703 ATNAVFD 709
+ V +
Sbjct: 302 VGDRVAE 308
|
Length = 456 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 5e-09
Identities = 73/284 (25%), Positives = 112/284 (39%), Gaps = 75/284 (26%)
Query: 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA--FRKFSFDHEVLVDFLGKD 499
+EPA++ AE L + +G + +FS++GS A E A K+A + +
Sbjct: 88 HEPAIKLAEKLNEWLGGEY--VIFFSNSGSEANETAFKIARQYHAQKGEPH--------- 136
Query: 500 TTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPY------TGFLQQPWYSGRGLFLDPP 551
K ++ +YHG+++GA+ A QA Y GFL P PP
Sbjct: 137 ------RYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVP----------PP 180
Query: 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611
C R E D DL + I + +
Sbjct: 181 ----------------------------DCYRMPGIESE-DIYDLECV--KEIDRVMTW- 208
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLG 670
++S I A+I+EP++ GG+ M + + VKE CQ +I DEV GF R G
Sbjct: 209 ---ELSETIAAVIMEPII-TGGGVLMPPQDYMK-AVKEICQKHGALLISDEVICGFGRTG 263
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714
G PDI K +T +PL+AT ++++F G
Sbjct: 264 KAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGK 307
|
Length = 451 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 6e-09
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP+ GG+ + + + C +I DEV TG R G + G
Sbjct: 225 VAAIILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEG 283
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVF 708
PDI C K L GGV+P+ AT+AT AVF
Sbjct: 284 VQPDILCLAKALGGGVMPIGATIATEAVF 312
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 7e-09
Identities = 64/271 (23%), Positives = 100/271 (36%), Gaps = 70/271 (25%)
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
E A L+ + G S+ +F++ G+ A E A++MA R + G+
Sbjct: 99 EAARLIAE-RAPGDLSKVFFTNGGADANEHAVRMA-RLHT----------GRP------- 139
Query: 507 LKVLALKGSYHGDTLGAMEAQA-----PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561
KVL+ SYHG T A+ P+ +G F P F+Y S++
Sbjct: 140 -KVLSAYRSYHGGTGSAINLTGDPRRWPNDTGR-------AGVVHFFGP---FLYRSEFH 188
Query: 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621
+ E + + H I E + I
Sbjct: 189 ATTEEEECERALAHL------ERVIELEGPST--------------------------IA 216
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A+++E V AG +V P V+E C I +I DEV GF R G + G
Sbjct: 217 AILLESVPGTAG--ILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV 274
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
VPD+ + K + G +PL + A+ +F
Sbjct: 275 VPDLITFAKGVNSGYVPLGGVAISEAIAATF 305
|
Length = 451 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 8e-09
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 35/170 (20%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ-----GPD-- 414
W P TQ K E + ++ GE +Y ++ DA +SWW P
Sbjct: 23 WHPCTQMK--HHERLPLLPVARGEGAWLYDRDGRRY----LDAISSWWVNLFGHANPRIN 76
Query: 415 ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474
A L+ +L D H M +EPA+E AE L G G A+F+ +G++A+
Sbjct: 77 AALKDQL--DT------LEHAMLAGCTHEPAIELAERLAALTG-GTLGHAFFASDGASAV 127
Query: 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
EIALKM+F + + + + + L YHG+T+GA+
Sbjct: 128 EIALKMSFHAWR-------------NRGRGDKREFVCLANGYHGETIGAL 164
|
Length = 453 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 622 ALIIEPVVHA-AGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A + E VV A AG + V F+RI +E C + +I DEV G R G + G
Sbjct: 202 AFVAETVVGATAGAVPPVPGYFKRI--REVCDRYGVLLILDEVMCGMGRTGTLFACEEDG 259
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLWD---------------LELIQ 724
PD+ K L G P+ A LA++ ++D+ S + L + +
Sbjct: 260 VAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQR 319
Query: 725 QISSHRTVQRVVALGTLCAIELQAA 749
I+ + V A G L+
Sbjct: 320 VIAEDGLLANVRARGEQLRARLRER 344
|
Length = 443 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 2e-08
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I+EPV AG M +V P F L + C +IFDEV TGF R+ +
Sbjct: 198 IAAVIVEPV---AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGY 253
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 254 YGVTPDLTTLGKIIGGG-LPVGA 275
|
Length = 426 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLL 678
I A I EP++ +GG+ + P + + + C+ I I DEV TGF RLG + +
Sbjct: 221 IAAFIAEPIL-GSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVF 279
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
G PDI + K LT G PL A + + + D
Sbjct: 280 GIQPDIITFAKGLTSGYQPLGAVIISERLLD 310
|
Length = 466 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 71/282 (25%), Positives = 104/282 (36%), Gaps = 57/282 (20%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A F H F YE + AE L + ++ F ++G+ A+E A+K+A R ++
Sbjct: 62 VAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYT-- 118
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
G+ V+A +HG T M A P+ SG G F
Sbjct: 119 --------GRPG--------VVAFDHGFHGRTNMTMALTAKV-------MPYKSGFGPF- 154
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ LP + Y + K + S D R I+ + N
Sbjct: 155 -APEVYR------APLP-YPYRDGLLDKQL---STDGELAAARA------IFVIDVGANN 197
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
+ AL+IEPV GG + F L+ C+ I I DEV TGF R
Sbjct: 198 V-----------AALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR 245
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G + G PD+ K L G +PL+ + D+
Sbjct: 246 TGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDA 286
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
LLQ+P + A I+EP+ G+ + D + + + + C+ + +I DE+ TG
Sbjct: 173 LLQDPN------VAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLG 225
Query: 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
R G D G PDI GK L+GG+ P++A LA + V
Sbjct: 226 RTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVI 269
|
Length = 400 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A GHV N++ EP + AE L++ +G R +F ++G+ A E A K+A
Sbjct: 72 LATLGHV---SNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-- 126
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
G+ K++A +G +HG T+GA+
Sbjct: 127 ----------GRT--------KIVAAEGGFHGRTMGAL 146
|
Length = 398 |
| >gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R+SG + S EL+ + ++E +SPHLAAE E G + +E L + LR L+
Sbjct: 58 RLSGLDLSY--ELIN--PYRFKEPLSPHLAAELE-----GRTIDLEKLSQGLRQLLK--- 105
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
K +++ +VE AGG+ P DL +LP ILV +LG I+ T+ E+
Sbjct: 106 -----KYDLV-LVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEA 159
Query: 274 LKLRGYDVVAVVF 286
L+ RG + V
Sbjct: 160 LRARGLPLAGWVA 172
|
Length = 223 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 70/280 (25%), Positives = 101/280 (36%), Gaps = 63/280 (22%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
RF H YE + AE L V +A + F G+ A+E A+K+A
Sbjct: 71 RFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIA--------- 121
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T + V+A G +HG T M TG + P+ G G
Sbjct: 122 -------RAATGRS---AVIAFGGGFHGRTFMGMS------LTGKVV-PYKVGFGA---- 160
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
M + + P L+ VE + + D++F + D +A+I
Sbjct: 161 ----MMPDVYHVPFPVELHGVSVEQ---SLAALDKLFKADVDPQRVAAI----------- 202
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
IIEPV GG + F + L + C I +I DEV TGF R G
Sbjct: 203 -------------IIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTG 248
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
+ D+ K L GG PLAA + D+
Sbjct: 249 KLFAMEHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDA 287
|
Length = 425 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+ A+ +EPV +A G F+R V+E C + ++ DEV F RLG +
Sbjct: 222 VAAVFLEPVQNAGGCFPPPPGYFER--VREICDRYDVLLVSDEVICAFGRLGEMFGCERF 279
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G VPDI K +T G PL A +A++ +F+ F
Sbjct: 280 GYVPDIITCAKGITSGYSPLGAMIASDRLFEPF 312
|
Length = 460 |
| >gnl|CDD|222178 pfam13500, AAA_26, AAA domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLP 98
T + +T +GKT+VS GL + K Y KPIQ+G D DS + +L
Sbjct: 2 TIFVTGTDTGVGKTVVSLGLVRAL------KRGVKVGYWKPIQSGLVDDGDSELV-KRLL 54
Query: 99 SLSLRRNFPSSLILS 113
L R P LS
Sbjct: 55 GLDQTREHPEPYRLS 69
|
This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif. Length = 197 |
| >gnl|CDD|129447 TIGR00347, bioD, dethiobiotin synthase | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 172 FAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGG 231
+A+ +SPH+AA++E + D + + L + + K + + +VE AGG
Sbjct: 65 YAFALPLSPHIAADQEGRPI--DLEELS-------KHLRTLEQ----KYDFV-LVEGAGG 110
Query: 232 VASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVV 285
+ P DL + +LP ILV +LG I+ T+ E + G + V+
Sbjct: 111 LCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVI 164
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 166 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 64/274 (23%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
+P+L+ A+ LL+ + +F+++GS A + +K+ + + LG+ +
Sbjct: 133 KPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVW--------YYNNALGRPNKK 184
Query: 503 KCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK-- 559
K I A SYHG TL A + P+ + F D P F+ ++
Sbjct: 185 KFI-----ARSKSYHGSTLISASLSGLPALHQKF-------------DLPAPFVLHTDCP 226
Query: 560 --WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
W LP E EE S+ LA +NL+ G +
Sbjct: 227 HYWRFHLP------------------GET--EEEFSTRLADNL-----ENLILKEGPET- 260
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRI--LVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
I A I EPV+ A G + F++I ++K+ I I DEV F RLG
Sbjct: 261 --IAAFIAEPVMGAGGVIPPPATYFEKIQAVLKK---YDILFIADEVICAFGRLGTMFGC 315
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
D PD+ K L+ +P+ A L + + D
Sbjct: 316 DKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISD 349
|
Length = 504 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 7e-07
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EPA A+ L+ G YF GS A+E ALK+A R++ F+ +
Sbjct: 73 EPAEALADRLVAAAPAG-LEHVYFVSGGSEAVEAALKLA-RQY---------FVEIGQPQ 121
Query: 503 KCIELKVLALKGSYHGDTLGAMEA 526
+ +A + SYHG+TLGA+
Sbjct: 122 R---RHFIARRQSYHGNTLGALAI 142
|
Length = 443 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 8e-07
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EPV GG+ F + L + + +I DEV TG R G +L G
Sbjct: 182 AVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIE 240
Query: 682 PDIACYGKLLTGGVIPLAATLATNAV 707
PDI GK + GGV PLAA LA V
Sbjct: 241 PDIMTLGKGIGGGV-PLAALLAKAEV 265
|
Length = 395 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDE 661
I Q ++ + G +V+G +I EP+ M +V P F +++ C+ I DE
Sbjct: 190 IFQTVMNSLGHRVAG----VIFEPI---CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDE 242
Query: 662 VFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
V TGF R+ A + PDI YGK+L GG +P AA +A ++ D
Sbjct: 243 VVTGF-RVAQGGAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMD 288
|
Length = 433 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 9e-07
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL-- 677
A++IEP+ GG+ F + L + C + +IFDEV G R T L
Sbjct: 176 TAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGR-----TGKLFA 229
Query: 678 ---LGCVPDIACYGKLLTGGVIPLAATLATNAV 707
G PDI K + GG PL A LAT
Sbjct: 230 HEWAGVTPDIMAVAKGIGGG-FPLGACLATEEA 261
|
Length = 389 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A + EP+ AG + + + + + + C + +I DE+ TG R G D
Sbjct: 225 IAAFLFEPIQGEAGVV-IPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEE 283
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAV 707
PD+ GK L GGVIP++A LA V
Sbjct: 284 VRPDVVILGKALGGGVIPVSAVLADKDV 311
|
Length = 474 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 52/221 (23%), Positives = 77/221 (34%), Gaps = 64/221 (28%)
Query: 620 IGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A I EPV+ AGG+ +V P +++I + I ++ DEV GF R G +
Sbjct: 219 IAAFIGEPVM-GAGGV-IVPPKTYWEKIQAV-LRKYDILLVADEVICGFGRTGNMFGCET 275
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK--------------------- 716
G PDI K L+ PL+A L V+D +S
Sbjct: 276 FGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVA 335
Query: 717 LWDLELIQ--------------------QISSHRTVQRVVALGTLCAIELQA-------- 748
L +L +I+ ++ H V V +G + A+EL A
Sbjct: 336 LENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPF 395
Query: 749 --AGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 787
G E GV R +G+ + C P
Sbjct: 396 EPPGKVGAR-------ANAAAHEHGVISRAMGDTLAF-CPP 428
|
Length = 460 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EP+ GG+ DP F + L + C +IFDEV TG R G G
Sbjct: 182 AVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 240
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
PDI K L GG P+ A L T + VG
Sbjct: 241 PDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGT 273
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 60/243 (24%), Positives = 91/243 (37%), Gaps = 77/243 (31%)
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI---ELKVLALKGSYHGDTLGAMEA 526
G+ A+E A+K+A RK+ + K I + +++ KG++HG TLGA+
Sbjct: 103 GAEAVETAIKLA-RKWGYK-------------VKGIPENQAIIVSAKGNFHGRTLGAISM 148
Query: 527 QA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585
P T F G ++ YN
Sbjct: 149 STDPDSRTNF---------GPYVPGFKKIPYN---------------------------- 171
Query: 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645
+ L L++ G V A I+EP+ AG + D ++
Sbjct: 172 ------NLEALEEA---------LEDHGPNVC----AFIVEPIQGEAGVVVPDDGYLKK- 211
Query: 646 LVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLAT 704
V+E C + +I DE+ TG R G D PDI GK L+GGV P++A LA
Sbjct: 212 -VRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLAD 270
Query: 705 NAV 707
+ V
Sbjct: 271 DDV 273
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 86/385 (22%), Positives = 136/385 (35%), Gaps = 134/385 (34%)
Query: 440 NVYEPAL--ECAELLLQG-VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496
N++ +L E A LL + G +F ++G+ A E ALK+A RK +
Sbjct: 66 NLFTNSLQEEVASLLAENSAGD----LVFFCNSGAEANEAALKLA-RKHT---------- 110
Query: 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556
GK K++ + S+HG T G M A TG Q+ G G P
Sbjct: 111 GKS--------KIVTFEQSFHGRTFGTMSA------TG--QEKIKEGFG-----PL---- 145
Query: 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKV 616
LP + + V DI + E + ++A++
Sbjct: 146 -------LPGFTH---VPFNDI------KALKEVMN-EEVAAV----------------- 171
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
++E VV GG+ DP F + + C+ +I DEV TG R G +
Sbjct: 172 -------MLE-VVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYE 223
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATL--------------------------ATNAVFD- 709
G PDI K L G IP+ A + A V
Sbjct: 224 QFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQV 282
Query: 710 ----SFVGDSK-----LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYA 760
SF+ + + L +++ V+ + G + IE
Sbjct: 283 IKQPSFLEEVQEKGEYFLQK-LQEELEHLECVKNIRGKGLMIGIECTEE----------V 331
Query: 761 ASLLKKLREDGVYMRPLG-NVIYLM 784
A ++++LRE+G+ + G NVI L+
Sbjct: 332 APVIEQLREEGLLVLSAGPNVIRLL 356
|
Length = 377 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
G A+ +EPV GG++ F + L C ++FDEV G R G
Sbjct: 164 QKGKTAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAH 222
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GD 714
+ G PDI K L GG +P+ A L T V + GD
Sbjct: 223 EAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGD 261
|
Length = 382 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EP+ GG+ D F + L + C +IFDEV TG R G G
Sbjct: 186 AVIVEPIQ-GEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 244
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
PD+ K L GG P+ A L T
Sbjct: 245 PDVLTTAKALGGG-FPIGAMLTTEKCASVMT 274
|
Length = 406 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAG--GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ A+++EP+V G G+ P F + + VI+DEV T F R DL
Sbjct: 201 VAAVLVEPIV---GNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDL 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK++ GG +P+ A
Sbjct: 257 LGVEPDLTALGKIIGGG-LPIGA 278
|
Length = 428 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
G I A+I+EPVV +G + + F L + + ++FDEV TGF R+ +
Sbjct: 245 GEIAAVILEPVVGNSGFI-VPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEY 302
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 303 FGITPDLTTLGKVIGGG-LPVGA 324
|
Length = 474 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 620 IGALIIEPVVHAAGGMHMVDP------LFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673
I A I EPV+ G +V P Q +L K I +I DEV TGF RLG
Sbjct: 221 IAAFIAEPVLGTGG---IVPPPAGYWPAIQAVLKK----YDILLIADEVVTGFGRLGSMF 273
Query: 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
+D G PD+ K LT PL+ ++ V+D
Sbjct: 274 GSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWD 309
|
Length = 461 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EP+ GG+ P F + L + C +IFDEV TG R G G
Sbjct: 187 AVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVT 245
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VG 713
PDI K L GG P+ A L T + F VG
Sbjct: 246 PDILTSAKALGGG-FPIGAMLTTAEIASHFKVG 277
|
Length = 403 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+++EP+ GG ++ P F L C I +I DEV TGF R G +
Sbjct: 199 VAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYD 257
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PD+ K L GG +P++A + V D+
Sbjct: 258 VKPDLITMAKSLGGG-MPISAVVGRAEVMDA 287
|
Length = 421 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 622 ALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A ++EP+ AG + P F + + C+ + I DE+ TG R G D
Sbjct: 189 AFLVEPIQGEAG---INIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDN 245
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PD+ GK L GGV P++ A + F
Sbjct: 246 VTPDMYILGKALGGGVFPISCVAANRDILGVF 277
|
Length = 396 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 35/180 (19%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ 411
D+ A W FT+H + V VI GE ++ D+ +++ D A +
Sbjct: 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIV--RGEGCYIWDDRGKRYL----DGLAGLFV- 63
Query: 412 GPDATLQI-----ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRA 464
+Q+ ELA A FP Y PA+E AE L + G +R
Sbjct: 64 -----VQVGHGRAELAEAAAKQAGTLAF--FPLWSYAHPPAIELAERL-AALAPGDLNRV 115
Query: 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
+F+ GS A+E A K+A + F GK K I + +YHG T GA+
Sbjct: 116 FFTTGGSEAVESAWKLAKQYFKL--------TGKPGKHKVISRAI-----AYHGTTQGAL 162
|
Length = 460 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 22/123 (17%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
EL + + A + H+ N Y EP L A+ L V +A + +F ++G+ A E A
Sbjct: 55 ELVKALIEQADKLWHI---GNGYTNEPVLRLAKKL---VDATFADKVFFCNSGAEANEAA 108
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GFL 536
LK+A R+++ D G D +E ++A K S+HG TL + Y+ GF
Sbjct: 109 LKLA-RRYALDK------HGADKSE------IVAFKNSFHGRTLFTVSVGGQPKYSQGFA 155
Query: 537 QQP 539
P
Sbjct: 156 PLP 158
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+IIEP+ GG + F L++ C+ + I DEV TGF R G + G V
Sbjct: 222 AVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIV 280
Query: 682 PDIACYGKLLTGGVIPLAA 700
PD+ K + GG +PL+A
Sbjct: 281 PDLITTAKGIAGG-LPLSA 298
|
Length = 443 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A HV NVY P +E A+ L V +A R +F ++G+ A E A+K A RK+
Sbjct: 44 AGTLAHV---SNVYHTIPQVELAKRL---VASSFADRVFFCNSGTEANEAAIKFA-RKY- 95
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
V E ++ S+HG TLGA+
Sbjct: 96 --QRVRAPDKKDPAASSATEF--VSFSNSFHGRTLGAL 129
|
Length = 382 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 18/84 (21%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
NV+ EPAL A+ L + +A R +F+++G+ A E A K+A R+++ D G
Sbjct: 77 NVFTNEPALRLAKKL---IDATFAERVFFANSGAEANEAAFKLA-RRYACDR------HG 126
Query: 498 KDTTEKCIELKVLALKGSYHGDTL 521
+ TE ++A S+HG TL
Sbjct: 127 PEKTE------IIAFHNSFHGRTL 144
|
Length = 403 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 601 SSYISQNLLQNPGLKVSGCI--GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
S +N +++ SG A+I+E + GG+ + + + + + I +I
Sbjct: 189 SIEYFENFIEDVE---SGVDKPAAVILE-AIQGEGGVVAAPSEWLQKIREVTRKHDIKLI 244
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
DEV GF R G + G PD K + GG +PLA L FD++
Sbjct: 245 LDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLAVLLIAPE-FDAW 295
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I I EP+ G H P F R + C +IFDEV TG G LG
Sbjct: 219 IACFIAEPIQGEGGDNHF-RPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLG 277
Query: 680 CVPDIACYGK 689
PDI +GK
Sbjct: 278 VQPDIVAFGK 287
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDP---LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+ AL EP+ AG M+ P F++ L K I ++ DEV +G R G +
Sbjct: 205 VAALFAEPIQGDAG---MIVPPEDYFKK-LKKILDEHGILLVVDEVQSGLGRTGKWFAIE 260
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G PDI GK L GG +P++AT+ + DS
Sbjct: 261 HFGVEPDIITLGKPLGGG-LPISATIGRAEIMDS 293
|
Length = 443 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 63/282 (22%), Positives = 108/282 (38%), Gaps = 56/282 (19%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
++ H F +YEP +E AE L + + F ++G+ A+E A+K+A RK++
Sbjct: 83 VDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIA-RKYT-K 140
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ ++ F +G +HG TL M + +P+ G G F
Sbjct: 141 RQGIISFS----------------RG-FHGRTLMTMTMTSKV-------KPYKFGFGPF- 175
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ + PE +T D+ EE + ++ + I+
Sbjct: 176 -APEVYKAPFPYEYRRPE----------GLTEEQYDDFMIEEFKNFFISEVAPETIA--- 221
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
A+++EPV GG + F + + C I + DE+ TGF R
Sbjct: 222 -------------AVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFAR 267
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G + VPD+ K L GV P++ + + D
Sbjct: 268 TGKYFAIEHFDVVPDLITVSKSLGAGV-PISGVIGRKEIMDE 308
|
Length = 451 |
| >gnl|CDD|239383 cd03109, DTBS, Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 225 IVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAV 284
+VE AGG+ P D+ + LP ILV LG I+ E+ +++G + V
Sbjct: 43 LVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGV 102
Query: 285 VFEDHGLVNEVPLMSYLRNRVPVLVLPPLP 314
+ E + + +P L
Sbjct: 103 LGNVIVE-KEGLATLNVETIERLTGIPVLG 131
|
The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. Length = 134 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A ++EP+ AG + F R V+E C + +I DE+ TG R G + G
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTR--VRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI 247
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAV 707
D+ GK L+GG P++A L+ + V
Sbjct: 248 EADVTLIGKALSGGFYPVSAVLSNSEV 274
|
Length = 401 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
L + A++F H N Y EP L A+ L+ +A R +F ++G+ A E A
Sbjct: 59 ALREALNEQASKFWHT---GNGYTNEPVLRLAKKLIDAT---FADRVFFCNSGAEANEAA 112
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537
LK+A RK++ D G + ++A K ++HG TL + A
Sbjct: 113 LKLA-RKYAHDR------YGSHKSG------IVAFKNAFHGRTLFTVSAGG--------- 150
Query: 538 QPWYS 542
QP YS
Sbjct: 151 QPKYS 155
|
Length = 406 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++E +V G+ D F + L CQ I +I DEV TG R G + G
Sbjct: 168 AVMLE-LVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE 226
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PDI K L GV P+ A LA +++ +F
Sbjct: 227 PDIFTLAKGLANGV-PVGAMLAKSSLGGAF 255
|
Length = 375 |
| >gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 46 NTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG---YPHDSDSRFLFTKLPSLSL 102
+T +GKT+VSA L KP+QTG +SD+ L +L L L
Sbjct: 11 DTGVGKTVVSAAL-----AQALKQQGYSVAGYKPVQTGSEETAENSDALVL-QRLSGLDL 64
Query: 103 RRNFPSSLILS 113
+
Sbjct: 65 SYELINPYRFK 75
|
Length = 223 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 29/122 (23%)
Query: 429 AARFGHVMFPENVYE-PALE-CAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + HV N+Y P E AE L V +A + +F+++G+ A+E A+K A R++
Sbjct: 60 AEKLWHV---SNLYRIPEQERLAERL---VENSFADKVFFTNSGAEAVECAIKTA-RRYH 112
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT--------GFLQQ 538
+ GK E+ +++ +G++HG TL + A Y GF Q
Sbjct: 113 Y---------GKGHPER---YRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQV 160
Query: 539 PW 540
P+
Sbjct: 161 PF 162
|
Length = 389 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG------FW---RLG 670
I I EP+ GG + P F + + C +IFDEV TG W +LG
Sbjct: 226 IACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLG 284
Query: 671 VETTADLLGCVPDIACYGK 689
V PDI +GK
Sbjct: 285 VR---------PDIVAFGK 294
|
Length = 443 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I EPV GG ++ + + C I +I DEV +GF R G D
Sbjct: 199 VAAIIFEPV-QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYA 257
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PD+ K L GG +PL+ + + D+
Sbjct: 258 DKPDLMTMAKSLAGG-MPLSGVVGNANIMDA 287
|
Length = 421 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 818 | |||
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| COG0132 | 223 | BioD Dethiobiotin synthetase [Coenzyme metabolism] | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| PF13500 | 199 | AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R | 100.0 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 100.0 | |
| PRK12374 | 231 | putative dithiobiotin synthetase; Provisional | 99.98 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| PRK00090 | 222 | bioD dithiobiotin synthetase; Reviewed | 99.97 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.97 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.97 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.96 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.96 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.96 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.95 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.93 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.92 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.92 | |
| TIGR00347 | 166 | bioD dethiobiotin synthase. Dethiobiotin synthase | 99.91 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 99.91 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 99.91 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.91 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.91 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.91 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 99.91 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 99.9 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 99.9 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 99.89 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 99.89 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.87 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.87 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.87 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.86 | |
| cd03109 | 134 | DTBS Dethiobiotin synthetase (DTBS) is the penulti | 99.85 | |
| PRK05632 | 684 | phosphate acetyltransferase; Reviewed | 99.85 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.85 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.79 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.73 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.64 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.61 | |
| PLN02721 | 353 | threonine aldolase | 99.61 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.56 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.56 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.55 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.54 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.53 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.52 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.5 | |
| COG0857 | 354 | Pta BioD-like N-terminal domain of phosphotransace | 99.5 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.48 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.4 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.37 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.35 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.34 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.34 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.34 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.32 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.3 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.3 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.3 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.29 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.29 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.29 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.29 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.28 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.27 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.26 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.25 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.25 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.23 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.23 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.23 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.22 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.22 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.2 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.2 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.2 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.2 | |
| PRK07324 | 373 | transaminase; Validated | 99.19 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.19 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.18 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.18 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.16 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.15 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.15 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.14 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.13 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.12 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.12 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.11 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.11 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.11 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.1 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.09 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.09 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.08 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.08 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.07 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.07 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.06 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.06 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.05 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.04 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.03 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.03 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.02 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.02 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.01 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.0 | |
| PLN02242 | 418 | methionine gamma-lyase | 98.99 | |
| PRK09148 | 405 | aminotransferase; Validated | 98.99 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 98.99 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 98.98 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 98.98 | |
| PRK07683 | 387 | aminotransferase A; Validated | 98.98 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 98.98 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 98.97 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 98.97 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 98.97 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 98.96 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 98.96 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 98.95 | |
| PRK08175 | 395 | aminotransferase; Validated | 98.95 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 98.95 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 98.95 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 98.95 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 98.95 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 98.94 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 98.94 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 98.93 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.93 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 98.93 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 98.93 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 98.93 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 98.92 | |
| PLN02656 | 409 | tyrosine transaminase | 98.91 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 98.9 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 98.9 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 98.9 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.89 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 98.89 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 98.88 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 98.88 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 98.88 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 98.88 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 98.88 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 98.88 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 98.87 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 98.87 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 98.86 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 98.86 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.86 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 98.85 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 98.84 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 98.84 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 98.84 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 98.84 | |
| PRK06855 | 433 | aminotransferase; Validated | 98.84 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 98.83 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 98.82 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 98.82 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 98.82 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 98.82 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 98.81 | |
| PRK07337 | 388 | aminotransferase; Validated | 98.8 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 98.8 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.8 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 98.8 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 98.79 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 98.79 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 98.79 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 98.78 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.77 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 98.75 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.75 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.75 | |
| PLN02187 | 462 | rooty/superroot1 | 98.74 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 98.74 | |
| PLN02651 | 364 | cysteine desulfurase | 98.74 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 98.73 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 98.72 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 98.72 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 98.72 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 98.71 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 98.71 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 98.71 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 98.71 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 98.7 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 98.7 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 98.7 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 98.7 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.7 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 98.69 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 98.69 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 98.69 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 98.68 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 98.68 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 98.68 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 98.66 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 98.66 | |
| PLN02509 | 464 | cystathionine beta-lyase | 98.66 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 98.66 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 98.64 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 98.64 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 98.63 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 98.63 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 98.63 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.62 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 98.62 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 98.61 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 98.61 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 98.61 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 98.6 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 98.6 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 98.6 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 98.6 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.6 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 98.6 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 98.59 | |
| PLN02231 | 534 | alanine transaminase | 98.59 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.56 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 98.55 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 98.54 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 98.53 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 98.52 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.51 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 98.5 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 98.5 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 98.49 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 98.49 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 98.48 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.48 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 98.47 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 98.47 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 98.46 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 98.46 | |
| PLN02880 | 490 | tyrosine decarboxylase | 98.44 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 98.43 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 98.42 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 98.41 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 98.4 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 98.4 | |
| CHL00175 | 281 | minD septum-site determining protein; Validated | 98.39 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 98.39 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 98.38 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 98.34 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 98.32 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 98.32 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 98.32 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 98.31 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 98.29 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 98.29 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.29 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 98.28 | |
| PLN02397 | 423 | aspartate transaminase | 98.28 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 98.28 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 98.27 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 98.27 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.26 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.23 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 98.23 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 98.22 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 98.22 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 98.19 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.19 | |
| PLN02263 | 470 | serine decarboxylase | 98.13 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 98.11 | |
| cd02033 | 329 | BchX Chlorophyllide reductase converts chlorophyll | 98.07 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 98.06 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 98.06 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 98.03 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 98.0 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t | 97.98 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.98 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 97.96 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 97.95 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.92 | |
| TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kin | 97.91 | |
| PRK11670 | 369 | antiporter inner membrane protein; Provisional | 97.89 | |
| COG0489 | 265 | Mrp ATPases involved in chromosome partitioning [C | 97.89 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 97.87 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 97.86 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 97.85 | |
| TIGR02016 | 296 | BchX chlorophyllide reductase iron protein subunit | 97.84 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.79 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 97.78 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.76 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 97.7 | |
| TIGR03815 | 322 | CpaE_hom_Actino helicase/secretion neighborhood Cp | 97.69 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 97.69 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 97.65 | |
| PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinas | 97.62 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 97.61 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 97.6 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 97.58 | |
| COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase | 97.57 | |
| PRK11519 | 719 | tyrosine kinase; Provisional | 97.56 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 97.53 | |
| KOG3022 | 300 | consensus Predicted ATPase, nucleotide-binding [Ce | 97.53 | |
| PRK14494 | 229 | putative molybdopterin-guanine dinucleotide biosyn | 97.52 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 97.52 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 97.48 | |
| PLN02368 | 407 | alanine transaminase | 97.48 | |
| PRK13185 | 270 | chlL protochlorophyllide reductase iron-sulfur ATP | 97.46 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). | 97.44 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 97.42 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 97.37 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.35 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 97.31 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 97.29 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.29 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 97.28 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 97.23 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.19 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.18 | |
| COG0455 | 262 | flhG Antiactivator of flagellar biosynthesis FleN, | 97.18 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 97.16 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 97.14 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 97.13 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 97.1 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 97.09 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 97.07 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 97.02 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.01 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 97.01 | |
| PRK14495 | 452 | putative molybdopterin-guanine dinucleotide biosyn | 96.97 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 96.97 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 96.93 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.92 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 96.91 | |
| cd03113 | 255 | CTGs CTP synthetase (CTPs) is a two-domain protein | 96.91 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 96.86 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 96.86 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 96.84 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 96.83 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 96.82 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 96.82 | |
| TIGR01287 | 275 | nifH nitrogenase iron protein. This model describe | 96.8 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.78 | |
| PRK13230 | 279 | nitrogenase reductase-like protein; Reviewed | 96.78 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.77 | |
| TIGR00176 | 155 | mobB molybdopterin-guanine dinucleotide biosynthes | 96.76 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.75 | |
| PRK13231 | 264 | nitrogenase reductase-like protein; Reviewed | 96.74 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 96.74 | |
| PRK13233 | 275 | nifH nitrogenase reductase; Reviewed | 96.67 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.63 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.56 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 96.54 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 96.53 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 96.51 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 96.46 | |
| PRK13236 | 296 | nitrogenase reductase; Reviewed | 96.44 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 96.4 | |
| PRK13235 | 274 | nifH nitrogenase reductase; Reviewed | 96.33 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 96.32 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 96.26 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 96.21 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 96.21 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 96.17 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 96.11 | |
| PRK13234 | 295 | nifH nitrogenase reductase; Reviewed | 96.07 | |
| PF00142 | 273 | Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot | 96.06 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 95.91 | |
| TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. | 95.89 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 95.77 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 95.76 | |
| PF07755 | 301 | DUF1611: Protein of unknown function (DUF1611); In | 95.75 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 95.62 | |
| PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 95.59 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 95.58 | |
| PRK13768 | 253 | GTPase; Provisional | 95.56 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 95.54 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 95.54 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.4 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 95.31 | |
| cd02029 | 277 | PRK_like Phosphoribulokinase-like (PRK-like) is a | 95.24 | |
| PLN02452 | 365 | phosphoserine transaminase | 95.19 | |
| PRK15453 | 290 | phosphoribulokinase; Provisional | 95.12 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 95.08 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 95.02 | |
| PF06564 | 243 | YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p | 94.84 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 94.82 | |
| COG1348 | 278 | NifH Nitrogenase subunit NifH (ATPase) [Inorganic | 94.72 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 94.7 | |
| PRK14491 | 597 | putative bifunctional molybdopterin-guanine dinucl | 94.68 | |
| COG3367 | 339 | Uncharacterized conserved protein [Function unknow | 94.68 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.52 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.48 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 94.48 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 94.44 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 94.44 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 94.39 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 94.36 | |
| PRK13886 | 241 | conjugal transfer protein TraL; Provisional | 94.25 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 94.14 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 94.11 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 94.09 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 93.87 | |
| COG2403 | 449 | Predicted GTPase [General function prediction only | 93.86 | |
| KOG2749 | 415 | consensus mRNA cleavage and polyadenylation factor | 93.81 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 93.77 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 93.74 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 93.58 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 93.52 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 93.39 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 93.11 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 92.95 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 92.74 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 92.74 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 92.7 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 92.7 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 92.63 | |
| PRK05636 | 505 | replicative DNA helicase; Provisional | 92.59 | |
| PHA02542 | 473 | 41 41 helicase; Provisional | 92.43 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 92.28 |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-119 Score=1077.30 Aligned_cols=751 Identities=62% Similarity=1.004 Sum_probs=615.5
Q ss_pred CCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCC
Q 003466 27 HPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNF 106 (818)
Q Consensus 27 ~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~ 106 (818)
++....++.+.+.+|||||+||||||+||++|++++. ++|.+|.|+||||||++.++|..++.+...++..+
T Consensus 17 ~~~~~~~~~~~~~~fI~GtnT~VGKT~vS~~L~~~~~-----~~g~~~~y~KPvqTG~~~~~Da~~v~~~~~~~~~~--- 88 (817)
T PLN02974 17 SSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAAAA-----SRRSPVLYVKPVQTGFPDDSDARFVFRKADSLSRR--- 88 (817)
T ss_pred CcccccccCCCceEEEEECCCCCCHHHHHHHHHHHHH-----HcCCceEEEEEEECCCCCCccHHHHHHhhhccccc---
Confidence 4566788899999999999999999999999999994 88999999999999998899999999876444222
Q ss_pred CcccccccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhh
Q 003466 107 PSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAER 186 (818)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~ 186 (818)
-.++..+|..+..++..+ +++.....+... +.-.|+..... .+..++.|.++|.|++|+|||+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~g~~~~------~~~~~~~~~~~~~~~~p~SPhlAA~~ 155 (817)
T PLN02974 89 SESLFASNRTLFLSPPAA-KSALGGVSSMGA------HAAVNAGAEAG------VTSSALWCHTLFAWRRAVSPHLAARR 155 (817)
T ss_pred cccccccccccccccccc-cccccccccccc------ccccccccccc------cccccccccCceecCCCCCHHHHHHH
Confidence 356778899999888777 444444444333 11222222111 11234678899999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHH
Q 003466 187 ESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISG 266 (818)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~ 266 (818)
+ |..+++++|.+.++++.++.- +.+..+.+|++|||||||+++|++.+.+++||++.+++|||||++.+||+|||
T Consensus 156 e-g~~i~~~~i~~~~~~~l~~~~----~~~~~~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~INh 230 (817)
T PLN02974 156 E-GRGVSDDEVLEAVNRSLREVG----ANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGGISA 230 (817)
T ss_pred h-CCCCCHHHHHHHHHHHHHhhh----cccccccCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 9 999999999999987654310 00112458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCCEEecCCCCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 003466 267 TISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSER 346 (818)
Q Consensus 267 ~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlgiP~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~~~~~r 346 (818)
+++++|+|+.+|++|.|||+|+...+|.++|++++.+++||+++|+.|.....++.+|++.....|..+++.+.+++.+|
T Consensus 231 tllt~eaL~~rGi~v~gii~~~~~~~N~~~l~~~~~~~~pv~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 310 (817)
T PLN02974 231 TLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVLPPVPEDPGDDLDEWFDDSKSTFDALLDALQSWHSGR 310 (817)
T ss_pred HHHHHHHHHHCCCCEEEEEEeCCccchHHHHHHHHhcCCcEEeCCCCCCCcchhHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999988889999999998779999999998888777899999988888999999999999999
Q ss_pred HHhhccchhhhcCccccccCCCCCCCCCCeEEEEeecCCe--eEEEeCCcCccccceeecccccccccCC-CCCCHHHHH
Q 003466 347 IQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGEN--FSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELAR 423 (818)
Q Consensus 347 ~~~~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~--~~v~D~dG~~~~~~ylD~~sg~~~~~lG-h~~hp~V~e 423 (818)
+++++.|.+++++++|||||+++.+....+.+|++++|.+ +|++|.+|++.+++|||++|||||+++| |+ ||+|++
T Consensus 311 ~~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~-~p~I~~ 389 (817)
T PLN02974 311 LQRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTL-QPELAR 389 (817)
T ss_pred hHHHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCC-CHHHHH
Confidence 9999999999999999999999987556788999999962 4799999953455899999999999999 68 999999
Q ss_pred HHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCcccc
Q 003466 424 DMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEK 503 (818)
Q Consensus 424 Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~ 503 (818)
|+++|+++++|+++.++.|+++.+|||+|++..+.+++++|||++|||||||.|||||+|+|+.++|+..+..+..+...
T Consensus 390 Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~ 469 (817)
T PLN02974 390 AVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGD 469 (817)
T ss_pred HHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCccccccccccc
Confidence 99999999999887778899999999999996654557899999999999999999997667766654000000000000
Q ss_pred ccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCc
Q 003466 504 CIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSR 583 (818)
Q Consensus 504 ~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~ 583 (818)
.+|.+||+++++|||+|+++|++++...++..|+.||+.+++.++++|.+.++++.+++++|..+++.... .+.+|.+.
T Consensus 470 ~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~ 548 (817)
T PLN02974 470 LIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEG-EETTWESR 548 (817)
T ss_pred CCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccc-cccccccc
Confidence 25889999999999999999999998777776556888888888888877777788888888765321000 00113333
Q ss_pred cchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecc
Q 003466 584 DEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF 663 (818)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~ 663 (818)
++.|+..++.+.+...|.+.+++.|++.+..+++++|||||+|||+||+||+++||++|+++||++||+||++||+|||+
T Consensus 549 ~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~ 628 (817)
T PLN02974 549 DEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVF 628 (817)
T ss_pred cccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecc
Confidence 33444333445667777888988886422113567899999999769999999999999999999999999999999999
Q ss_pred cCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh------H---------------------
Q 003466 664 TGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS------K--------------------- 716 (818)
Q Consensus 664 TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~------~--------------------- 716 (818)
|||||||++|+++++||+|||+|+||+|||||+|+||++++++|++.|.... +
T Consensus 629 TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~ 708 (817)
T PLN02974 629 TGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWY 708 (817)
T ss_pred cCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999885210 1
Q ss_pred ------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec
Q 003466 717 ------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL 777 (818)
Q Consensus 717 ------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~ 777 (818)
+|.+.+.+.+.+++.|.+|||.|+|++++|+.+.....+....+..+.+.|+ ++||++++.
T Consensus 709 ~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~ 788 (817)
T PLN02974 709 KDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL 788 (817)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec
Confidence 1112233445678999999999999999998764322334456778899999 999999999
Q ss_pred CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 778 GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 778 g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
|++|+++||+++++++++++++++++.|
T Consensus 789 Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 789 GNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998876
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-81 Score=690.86 Aligned_cols=397 Identities=30% Similarity=0.429 Sum_probs=338.7
Q ss_pred hhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccc
Q 003466 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (818)
Q Consensus 356 ~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~ 435 (818)
.+.+++|||||+++..... |.+|++++|. |+||.||| +|||++|||||+++||+ ||+|.+|+++|++++.|+
T Consensus 8 ~d~~~~whP~t~~~~~~~~-~~~i~~aeG~--yl~d~~G~----r~lDg~sg~W~~~~Gh~-~~~i~~Ai~~Q~~~l~~~ 79 (449)
T COG0161 8 ADLSHLWHPFTQMRDPLAE-PRVIVRAEGV--YLTDIDGR----RYLDGMSGLWCVNHGHG-RPEIAEAIKKQLDKLPHV 79 (449)
T ss_pred hhhhheecccccccccccc-ceeeeeccee--EEEeCCCC----EEEecccHHHHhhcCcC-CHHHHHHHHHHHHhCCch
Confidence 3889999999999886434 8899998885 79999999 99999999999999999 999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCC
Q 003466 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (818)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~s 515 (818)
++.+++++|+++||++|+++.|.+.+++|||++|||||||.||||| ++|+..+|+ ++|++||+++++
T Consensus 80 ~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma-~qY~~~~G~------------p~r~~~Isr~~g 146 (449)
T COG0161 80 MFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMA-LQYWRARGQ------------PQRKKFISRRNG 146 (449)
T ss_pred hhcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CcceEEEEeccC
Confidence 8888899999999999999998555899999999999999999999 677777787 789999999999
Q ss_pred CCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchh
Q 003466 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (818)
Q Consensus 516 YHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~ 595 (818)
|||+|++++|++|....+.. +| +++ .+...|++.|++|+.. +++ ...++
T Consensus 147 YHG~T~ga~Sv~g~~~~~~~----~~-------~~l----l~~~~~~~~P~~y~~~--------~~~--------~~~~~ 195 (449)
T COG0161 147 YHGDTLGAMSVGGPVALRHA----FY-------DPL----LPEVLHLPAPYAYRRG--------FFG--------EGDEE 195 (449)
T ss_pred cCcccchheeccCchhhhhh----hc-------ccc----ccCceecCCCcccccC--------CCC--------CChHH
Confidence 99999999999995544322 11 111 1345678888877421 111 11122
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh
Q 003466 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (818)
Q Consensus 596 ~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~ 675 (818)
. ..+++.||+.|.+ .++++|||||+|||+|++||+++||++||+++|++|++||||||+|||+|||||||++|++
T Consensus 196 ~-~~~a~~le~~i~~----~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~ 270 (449)
T COG0161 196 F-AEAADELEALILE----HGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFAC 270 (449)
T ss_pred H-HHHHHHHHHHHHh----cCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhh
Confidence 2 4567889999985 5669999999999977779999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEecccccCCccccceeecchHHHhhccCC-hH--------------------------------------
Q 003466 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SK-------------------------------------- 716 (818)
Q Consensus 676 e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-~~-------------------------------------- 716 (818)
+++||+|||+|+||||||||+|+||++++++|++.|..+ ..
T Consensus 271 e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~ 350 (449)
T COG0161 271 EHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIG 350 (449)
T ss_pred hhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999998775 21
Q ss_pred -HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC-CCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHH
Q 003466 717 -LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVC 794 (818)
Q Consensus 717 -~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edI 794 (818)
++.+++.+.+..+|.|++|||.|++.++|++.+.... +++...+..+.+.++++|++++|.|+.+.++||+++|++||
T Consensus 351 ~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g~~i~~~PPliit~~ei 430 (449)
T COG0161 351 AYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLGDVIYLMPPLIITREEI 430 (449)
T ss_pred HHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecCCEEEEcCCccCCHHHH
Confidence 2223333335667899999999999999999885432 33445577889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003466 795 SQLLLKLYQRLEEFD 809 (818)
Q Consensus 795 d~~~~~l~~~l~~l~ 809 (818)
|++++++.+++++..
T Consensus 431 d~l~~~l~~al~~~~ 445 (449)
T COG0161 431 DELVDALREALDETL 445 (449)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-74 Score=622.54 Aligned_cols=341 Identities=28% Similarity=0.360 Sum_probs=297.7
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.+|| +||||.+|+++++|||+ ||+|++|+++|++++.|.+. .+.+++..+|+++|++
T Consensus 24 ~~~~~~~G~G~--~v~D~~G~----~YlDf~~Giav~~lGH~-hP~iv~al~~Q~~kl~h~sn-~~~~~~~~~la~~L~~ 95 (404)
T COG4992 24 LPVVIVRGEGA--YVWDQQGR----EYLDFAAGIAVNNLGHC-HPALVEALKEQAEKLWHVSN-LFYNEPQAELAEKLVE 95 (404)
T ss_pred CceeEEecccc--EEECCCCC----EeeeeccceeeeccCCC-CHHHHHHHHHHHHHhhhccc-ccCChHHHHHHHHHHh
Confidence 35688888776 79999999 99999999999999999 99999999999999998763 5789999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.++ . .++|||+|||+||||+|||+| |.|++. ++|.+||+|.+||||+|++++|+|+.+.|+.
T Consensus 96 ~s~-~-~d~vff~NSGaEA~EaAiKlA-Rk~~~~---------------~~k~~Iia~~nsFHGRT~galS~t~~~ky~~ 157 (404)
T COG4992 96 LSP-F-ADRVFFCNSGAEANEAALKLA-RKYTGD---------------PEKSKIIAFENSFHGRTLGALSATGQPKYRK 157 (404)
T ss_pred hCc-c-ccEEEEcCCcHHHHHHHHHHH-HHHcCC---------------CCCcEEEEEcCCcCCccceeeeccCChhhcc
Confidence 997 2 689999999999999999999 778761 5678999999999999999999999888877
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
+|. |.. +++.+ ++|||+ +++++++.
T Consensus 158 ~F~-Pl~---------------~g~~~----------------vpfnDi------------------~al~~ai~----- 182 (404)
T COG4992 158 GFG-PLL---------------PGFRH----------------VPFNDI------------------EALEAAID----- 182 (404)
T ss_pred CCC-CCC---------------CCcee----------------cCCCCH------------------HHHHHHhc-----
Confidence 631 211 12222 338885 67787775
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++||||+||| ||+||++++|++||+++|+||++||+|||+||||||+||||++|+++|+||+|||+|++|+||||
T Consensus 183 ---~~taAvivEPI-QGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG 258 (404)
T COG4992 183 ---EDTAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG 258 (404)
T ss_pred ---cCeEEEEEecc-cCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeeccccCC
Confidence 38999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~G 739 (818)
+|+||+++++.+.+.+..+.+ ++.++|.+...+++.+.+|||+|
T Consensus 259 -~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~G 337 (404)
T COG4992 259 -FPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRG 337 (404)
T ss_pred -ccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecce
Confidence 899999999877887766544 22233444456778899999999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+|+++++..+ ..+..+++.|+++||++.+.+ +++||.||+++|+||||+++++|++++..+.
T Consensus 338 LmiGiel~~~--------~~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 338 LMIGIELKEP--------YRARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred eEEEEEecCc--------ccHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999876 247789999999999998754 8999999999999999999999999998764
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-73 Score=635.11 Aligned_cols=372 Identities=25% Similarity=0.312 Sum_probs=316.2
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|++++++.|. |+||+||| +||||.||+++.++||| ||+|++|+++|++++.|....-..+++.++++|+|.+
T Consensus 38 ~p~~~~ra~G~--~l~DvdG~----~ylDf~sgi~v~~~GH~-hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~ 110 (447)
T COG0160 38 FPLVIVRAEGA--YLYDVDGN----EYLDFLSGIAVLNLGHN-HPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTA 110 (447)
T ss_pred CcceEEecccC--EEEeCCCC----EEEEcccCcchhccCCC-CHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHH
Confidence 46789999987 79999999 99999999999999999 9999999999999999876544455999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.+|...+++++|+|||+||||+|||+| |.||++ ..||+|+++|||+|.+++++|+....+.
T Consensus 111 ~~p~~~~~~~~f~~sGaeA~E~AiKiA-r~~Tgr------------------~~viaf~~afHG~T~galslT~~~~~~~ 171 (447)
T COG0160 111 LAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR------------------PGVIAFDGAFHGRTLGALSLTGSKPPYK 171 (447)
T ss_pred hCCcccCCeEEecCCcHHHHHHHHHHH-HHHhCC------------------CcEEEECCcccccchhhHHhccCccccc
Confidence 988634689999999999999999999 899876 4799999999999999999998764332
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. +.++ +.+++.++++|++|+++.. .. .+++...+.+++++.+....
T Consensus 172 ~-------~~~~--------~~~~v~~~Pyp~~yr~p~~---------------~~--~~~~~~~~~~~~e~~i~~~~-- 217 (447)
T COG0160 172 A-------GFGP--------LPPGVYHVPYPNPYRCPFG---------------IG--GEECGDDALEYIERALFDLE-- 217 (447)
T ss_pred c-------CCCC--------CCCCeEEecCCccccCccc---------------Cc--hhhhhHHHHHHHHHHHHhhc--
Confidence 1 1111 1134678999999876431 11 13445555677888665432
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.+++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+||++|++||+|||+|+||+||||
T Consensus 218 ~~~~~vAaiI~EpI-QgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G 296 (447)
T COG0160 218 VGPEEVAAIIIEPI-QGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG 296 (447)
T ss_pred CCCCceeEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCC
Confidence 56789999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH----------------------------------HHHHHHHHHHHcCCCeeEEEeeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK----------------------------------LWDLELIQQISSHRTVQRVVALGT 740 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~----------------------------------~~~~~l~~~l~~~~~v~~vrg~Gl 740 (818)
+|+|+|+++++++++..+... ++.++|.+..+++|.|++|||+|+
T Consensus 297 -~Pl~avv~r~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Gl 375 (447)
T COG0160 297 -LPLSAVVGRAEIMDWPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGL 375 (447)
T ss_pred -CceeEEeccHHhcccCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccce
Confidence 799999999999994322111 222344445578999999999999
Q ss_pred EEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 741 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 741 ~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|+++|++.+.....++.+.+..++..|+++|+++..+| |+|||.||+++|++++|+.+++|+++|.++
T Consensus 376 m~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 376 MIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred EEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 99999998865666788899999999999999998755 999999999999999999999999999764
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-70 Score=621.99 Aligned_cols=397 Identities=23% Similarity=0.320 Sum_probs=322.0
Q ss_pred hhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccc
Q 003466 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (818)
Q Consensus 355 ~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~ 434 (818)
+.+.+++||||+++..+....|+++++++|. ||||.||| +||||++|+|++++||+ ||+|.+|+++|++++.+
T Consensus 4 ~~~~~~~w~p~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~ 76 (449)
T PRK07481 4 SNNARRFWHPMAHPAEMKARPPIIIVRGDGV--YVYDIDGK----KLLDGVGGLWNVNVGHN-REEVKEAIVRQLDELEY 76 (449)
T ss_pred ccccccccCCcccccccccCCCceEEecccc--EEEeCCCC----EEEECchhHHhhcCCCC-CHHHHHHHHHHHHhccc
Confidence 4567889999999987644468899998886 79999999 99999999999999999 99999999999999877
Q ss_pred ccC-CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEc
Q 003466 435 VMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (818)
Q Consensus 435 ~~~-~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (818)
.+. .+..+++..+||++|++++|++.+++|+|++|||||||+|||+| |.|++..|+ ++|.+||+|+
T Consensus 77 ~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~~~~~g~------------~~r~~ii~~~ 143 (449)
T PRK07481 77 YSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQYWKVRGQ------------PERTKFISLK 143 (449)
T ss_pred eecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEC
Confidence 543 25679999999999999885334689999999999999999999 788766554 5688999999
Q ss_pred CCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCc
Q 003466 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (818)
Q Consensus 514 ~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~ 593 (818)
++|||+|.+++++++...++..| .+ . .+++.+++.|+.+++ +||. .+.
T Consensus 144 ~~yHG~t~ga~s~~~~~~~~~~~-----~~---~--------~~g~~~~~~~~~~~~--------~~~~--------~d~ 191 (449)
T PRK07481 144 QGYHGTHFGGASVNGNTVFRRNY-----EP---L--------LPGCFHVETPWLYRN--------PFTE--------QDP 191 (449)
T ss_pred CCcCCcchhhhccCCCccccccc-----CC---C--------CCCCEEeCCCccccc--------ccCC--------CCH
Confidence 99999999999999866444321 00 0 123445555654432 1331 012
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc
Q 003466 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (818)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~ 673 (818)
+.+...+.+.+|+.|.. .++++|||||+||| |++||+++||++||++|+++|++||++||+|||+|||||||++|
T Consensus 192 ~~~~~~~~~~le~~i~~----~~~~~iAAviiEPv-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 266 (449)
T PRK07481 192 EELARICARLLEREIAF----QGPDTIAAFIAEPV-QGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWF 266 (449)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhh
Confidence 24445556778887763 35679999999998 99999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC-------hH------------------------------
Q 003466 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------SK------------------------------ 716 (818)
Q Consensus 674 a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-------~~------------------------------ 716 (818)
+++++||+|||+|+||+|||||+|+||+++++++++.+... .+
T Consensus 267 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~ 346 (449)
T PRK07481 267 GSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANA 346 (449)
T ss_pred HhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999877421 00
Q ss_pred -----HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC-c--hHHHHHHHHHHHhCCceEeecCCEEEEECCCC
Q 003466 717 -----LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY-G--SLYAASLLKKLREDGVYMRPLGNVIYLMCGPC 788 (818)
Q Consensus 717 -----~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~-~--~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~ 788 (818)
++.+.+.+..++++.+.+|||.|+|++++|..+.....+ + ...+..+.+.|+++||++.+.|+.++++||++
T Consensus 347 ~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~i~l~Ppl~ 426 (449)
T PRK07481 347 AKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSGTKIILSPPLV 426 (449)
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCEEEEECCCC
Confidence 111222222345888999999999999999754211211 1 34567788999999999999888899999999
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 003466 789 SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 789 ~t~edId~~~~~l~~~l~~l 808 (818)
+|++|||+++++++++++++
T Consensus 427 it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 427 IQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999764
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=621.94 Aligned_cols=399 Identities=19% Similarity=0.234 Sum_probs=320.8
Q ss_pred cchhhhcCccccccCCCCCCCC--CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhh
Q 003466 352 DMPKRAGELFWWPFTQHKLVPE--EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (818)
Q Consensus 352 ~l~~~~~~~~~~p~t~~~~~~~--~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~ 429 (818)
.+.+++.+++|+|++++..+.. ..|+++++++|. ++||.||| +||||+||+|++++||+ ||+|++|+++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-~p~v~~Av~~q~ 79 (461)
T PRK07482 7 ELLAWDRDHFFHPSTHLGDHARGELPGRIVEGGEGI--RITDAQGR----RYIDAFAGLYCVNVGYG-RTEVAEAIAEQA 79 (461)
T ss_pred HHHHhhhhhccCCcccccccccccCCCeeEEeeeee--EEEECCCC----EEEEcccchhhhcCCCC-CHHHHHHHHHHH
Confidence 4455567789999987755421 247899998886 79999999 99999999999999999 999999999999
Q ss_pred hhcccccC-CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceE
Q 003466 430 ARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (818)
Q Consensus 430 ~~~~~~~~-~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~ 508 (818)
+++.+... ..+.+++..+|||+|++.+|.+ +++|+|++|||||||+|||+| |+|++.+|. ++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~------------~~r~~ 145 (461)
T PRK07482 80 KELAYYHTYVGHGTEASITLSKRIIDRAPAG-MSKVYYGLSGSDANETQIKLV-WYYNNVLGR------------PEKKK 145 (461)
T ss_pred HhcCccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCce
Confidence 99875432 3567999999999999988754 689999999999999999999 778755443 56889
Q ss_pred EEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhh
Q 003466 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (818)
Q Consensus 509 II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~ 588 (818)
||+|+++|||+|.+++++++.+.++..| .++ ..+..+++.|+++++.. .+
T Consensus 146 Ii~~~~~YHG~t~ga~s~~~~~~~~~~~------------~~~----~~~~~~~~~p~~~~~~~-------~~------- 195 (461)
T PRK07482 146 IISRWRGYHGSGVVTGSLTGLSLFHQHF------------DLP----IARVLHTEAPHYYRRAD-------AG------- 195 (461)
T ss_pred EEEecCccCCccHhhhhccCCchhhhcc------------CCC----CCCCEEcCCCccccccc-------cC-------
Confidence 9999999999999999999876554431 111 12334555665543210 00
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCccc
Q 003466 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (818)
Q Consensus 589 ~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR 668 (818)
..++.+...+.+.+++.+++ .++++|||||+||| |++||+++||++|+++||++|++||+|||+|||+|||||
T Consensus 196 --~~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPv-qg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGR 268 (461)
T PRK07482 196 --MSEEQFSAYCADELEELILA----EGPDTIAAFIAEPV-LGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGR 268 (461)
T ss_pred --CCHHHHHHHHHHHHHHHHHh----cCCCcEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Confidence 01123344567888888853 34678999999998 999999999999999999999999999999999999999
Q ss_pred CCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC-------hH-------------------------
Q 003466 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------SK------------------------- 716 (818)
Q Consensus 669 tG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-------~~------------------------- 716 (818)
||++|+++++||+|||+|+||+|||||+|+||+++++++++.+... .+
T Consensus 269 tG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~ 348 (461)
T PRK07482 269 LGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILEREN 348 (461)
T ss_pred CcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999988999999999998876421 00
Q ss_pred ----------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCccc-CCCc--hHHHHHHHHHHHhCCceEeec--CCEE
Q 003466 717 ----------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-AGYG--SLYAASLLKKLREDGVYMRPL--GNVI 781 (818)
Q Consensus 717 ----------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-~~~~--~~~a~~~~~~l~e~Gvlv~p~--g~~i 781 (818)
++.+.+.+.+++++.+.+|||.|+|++++++.+... ..++ ...+..++..|+++||++++. ++++
T Consensus 349 l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i 428 (461)
T PRK07482 349 LVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDIL 428 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCCCCEE
Confidence 122334444567899999999999999999865321 1122 124678899999999999753 7999
Q ss_pred EEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 782 YLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 782 r~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
++.||+++|++|||+++++++++++++
T Consensus 429 ~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 429 GFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-69 Score=615.86 Aligned_cols=398 Identities=19% Similarity=0.261 Sum_probs=317.6
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
+.++++.++|+|++++.......|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~ 78 (459)
T PRK05965 6 LIELDRAHLIHPVASYRGHEARGVTVLASAKGA--TLTDASGH----QLLDAFAGLWCVNVGYG-QESIVEAAAEQMREL 78 (459)
T ss_pred HHHhhhhccccccccccccccCCCceEEeeeEe--EEEECCCC----EEEECcccHHhccCCCC-CHHHHHHHHHHHHhc
Confidence 345566778999987632211246789998886 79999999 99999999999999999 999999999999998
Q ss_pred ccccC-CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEE
Q 003466 433 GHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (818)
Q Consensus 433 ~~~~~-~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (818)
.+.+. ..+.+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |+|++.+|. ++|.+||+
T Consensus 79 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~------------~~r~kii~ 144 (459)
T PRK05965 79 PYATGYFHFGSEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVRFI-RHYWNATGR------------PSKKQFIS 144 (459)
T ss_pred CCcccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCChhHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 76543 2467899999999999998754 689999999999999999999 788766554 66889999
Q ss_pred EcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhccc
Q 003466 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (818)
Q Consensus 512 ~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~ 591 (818)
++++|||+|.+++++++.+.++..+ ++.. +...+++.|++++++ ++ .
T Consensus 145 ~~~~YHG~t~~a~s~t~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~--------~~---------~ 191 (459)
T PRK05965 145 LERGYHGSSSVGAGLTALPAFHRGF--------DLPL--------PWQHKIPSPYPYRNP--------VG---------D 191 (459)
T ss_pred ecCCcCcccHHHHHhcCCchhhccc--------CCCC--------CCCEEcCCCcccccc--------cC---------C
Confidence 9999999999999999865444321 1111 112344555444321 11 1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc
Q 003466 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (818)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~ 671 (818)
+.+.+...+.+.+++.|+. .++++|||||+||| |++||+++||++||++||++|++||++||+|||+|||||||+
T Consensus 192 ~~~~~~~~~~~~l~~~i~~----~~~~~iAAvIvEPi-qg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~ 266 (459)
T PRK05965 192 DPQAIIAASVAALRAKVAE----LGADNVAAFFCEPI-QGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP 266 (459)
T ss_pred ChHHHHHHHHHHHHHHHHh----cCCCceEEEEEecc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch
Confidence 1123445566788888864 34579999999997 999999999999999999999999999999999999999999
Q ss_pred cchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC-------hH-------------------HHH------
Q 003466 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------SK-------------------LWD------ 719 (818)
Q Consensus 672 ~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-------~~-------------------~~~------ 719 (818)
+|+++++||+|||+|+||+|||||+|+||+++++++++.+... .+ +++
T Consensus 267 ~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~ 346 (459)
T PRK05965 267 LFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLA 346 (459)
T ss_pred hhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999999999999999999999876421 01 111
Q ss_pred ------HHHH---HHHHcCCCeeEEEeeeeEEEEEEecCcccCCC---chHHHHHHHHHHHhCCceEeecC-CEEEEECC
Q 003466 720 ------LELI---QQISSHRTVQRVVALGTLCAIELQAAGCNAGY---GSLYAASLLKKLREDGVYMRPLG-NVIYLMCG 786 (818)
Q Consensus 720 ------~~l~---~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~---~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~pp 786 (818)
+.+. +.+.+++.|.+|||.|+|+++++..+.....+ +...+..+.+.|+++||++++.| +.|++.||
T Consensus 347 ~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~Pp 426 (459)
T PRK05965 347 NGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFAPA 426 (459)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCcEEEEECC
Confidence 1122 23345788999999999999999765321111 12356788999999999999876 78999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHH
Q 003466 787 PCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 787 l~~t~edId~~~~~l~~~l~~l~ 809 (818)
+++|++||++++++|+++++++.
T Consensus 427 L~it~~ei~~~~~~l~~~l~~~~ 449 (459)
T PRK05965 427 LCCTEGEFDLIFERTRKTLDDVL 449 (459)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998874
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=616.16 Aligned_cols=401 Identities=19% Similarity=0.241 Sum_probs=320.0
Q ss_pred cCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC
Q 003466 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (818)
Q Consensus 358 ~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~ 437 (818)
+..+||||+++.......|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+...
T Consensus 54 ~~~~~~p~~~~~~~~~~~p~~i~~~~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-hp~v~~Av~~ql~~~~~~~~ 126 (504)
T PLN02760 54 GHDMLAPFTAGWQSTDLEPLVIEKSEGS--YVYDINGK----KYLDALAGLWCTALGGS-EPRLVAAATEQLNKLPFYHS 126 (504)
T ss_pred cCCcccCcccccccccCCCceEEeeeee--EEEECCCC----EEEEcCcCHHhcccCCC-CHHHHHHHHHHHhhccceec
Confidence 3448999999876544467889998886 79999999 99999999999999999 99999999999999876532
Q ss_pred -CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCC
Q 003466 438 -PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (818)
Q Consensus 438 -~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sY 516 (818)
.++.+++..+|||+|++.+++..+++|+|+||||||||+|||+| |+|++.+|. ++|.+||+++++|
T Consensus 127 ~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlA-r~~~~~~g~------------~~r~~iI~~~~~y 193 (504)
T PLN02760 127 FWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLV-WYYNNALGR------------PNKKKFIARSKSY 193 (504)
T ss_pred ccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCc
Confidence 24678999999999999864333679999999999999999999 777755443 5688999999999
Q ss_pred CCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhH
Q 003466 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (818)
Q Consensus 517 HG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~ 596 (818)
||+|.+++++++.+.++.. +.++. +...+++.|++++... +. .+.+++
T Consensus 194 HG~t~~a~slsg~~~~~~~------------~~~~~----~~~~~~~~p~~~~~~~--------~~--------~~~~~~ 241 (504)
T PLN02760 194 HGSTLISASLSGLPALHQK------------FDLPA----PFVLHTDCPHYWRFHL--------PG--------ETEEEF 241 (504)
T ss_pred cCChHhhhhccCChhhccC------------CCCCC----CCcEEeCCCcccccCC--------CC--------CcHHHH
Confidence 9999999999987654432 11111 1234566665553210 00 011223
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhc
Q 003466 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 597 ~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
...+.+.+++.+.. .+++++||||+||| |++||+++||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 242 ~~~~~~~le~~l~~----~~~~~iAAvI~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e 316 (504)
T PLN02760 242 STRLADNLENLILK----EGPETIAAFIAEPV-MGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCD 316 (504)
T ss_pred HHHHHHHHHHHHHh----cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHH
Confidence 34445677777753 35678999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEecccccCCccccceeecchHHHhhccCC-------hH---------------------------------
Q 003466 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------SK--------------------------------- 716 (818)
Q Consensus 677 ~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-------~~--------------------------------- 716 (818)
++||+|||+||||+|||||+|+||+++++++++.+... .+
T Consensus 317 ~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~ 396 (504)
T PLN02760 317 KYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKI 396 (504)
T ss_pred hcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999977531 01
Q ss_pred --HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCC-C--chHHHHHHHHHHHhCCceEeecCCEEEEECCCCChH
Q 003466 717 --LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-Y--GSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSP 791 (818)
Q Consensus 717 --~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~-~--~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~ 791 (818)
.+.+.+ +.+.+++.+.+|||.|+|+++++.++..... . +...+..+++.|+++||++.+.++++|++||++||+
T Consensus 397 g~~l~~~L-~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~lrl~Ppl~it~ 475 (504)
T PLN02760 397 APRFQDGI-KAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAGDNIMMSPPLIITP 475 (504)
T ss_pred HHHHHHHH-HHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecCCEEEEECCCCCCH
Confidence 111122 2346688899999999999999976532111 1 223577789999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhh
Q 003466 792 EVCSQLLLKLYQRLEEFDKVEEKLK 816 (818)
Q Consensus 792 edId~~~~~l~~~l~~l~~~~~~~~ 816 (818)
+|||+++++++++++++++-...+|
T Consensus 476 eeid~~~~~l~~al~~~~~~~~~~~ 500 (504)
T PLN02760 476 EEVDELISIYGKALKATEERVAELK 500 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998864333333
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=612.87 Aligned_cols=398 Identities=28% Similarity=0.440 Sum_probs=318.5
Q ss_pred chhhhcCccccccCCCCCCCC-CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhh
Q 003466 353 MPKRAGELFWWPFTQHKLVPE-EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~-~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~ 431 (818)
+.+.+..++|+|++++..... .+|.++++++|. ||||.||| +|||+++|+|+.++||+ ||+|.+|+++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~ 95 (472)
T PRK08742 23 WRQRDLAVLWHPCTQMREHPHTLPLVPIARGEGA--WLVGHDGR----RYLDAVSSWWTNLFGHA-EPRIGAAIAAQAGE 95 (472)
T ss_pred HHHhhhcccccCCcccccccccCCCeeEEecccC--EEEeCCCC----EEEEcCccHHhccCCCC-CHHHHHHHHHHHHh
Confidence 345567779999988654321 134678888886 79999999 99999999999999999 99999999999999
Q ss_pred cccccCCCCCChhHHHHHHHHHhccCC----CCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccce
Q 003466 432 FGHVMFPENVYEPALECAELLLQGVGK----GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (818)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~----~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~ 507 (818)
+.+.....+.+++..+|+++|++.+|. +++++|+|++|||||||+|||+| |.|++.+|. ++|.
T Consensus 96 l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlA-r~~~~~~g~------------~~r~ 162 (472)
T PRK08742 96 LEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMA-FHYFHNRGE------------HRRT 162 (472)
T ss_pred CCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CCCc
Confidence 887655567799999999999998864 23679999999999999999999 777665554 5688
Q ss_pred EEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchh
Q 003466 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (818)
Q Consensus 508 ~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~ 587 (818)
+||+|+++|||+|.+++++++...++..| .|+ .++..+++.|+.+++.. ..
T Consensus 163 ~ii~~~~syHG~t~gals~~~~~~~~~~~-~p~---------------~~~~~~~~~p~~~~~~~--------~~----- 213 (472)
T PRK08742 163 RFIALENGYHGETIGALAVGDIPLYRRVY-APL---------------LLESLFAPSPDAYLAEP--------GQ----- 213 (472)
T ss_pred EEEEECCCcCCCchhhhhccCCccccccc-CCC---------------CCCCEEeCCCCcccccc--------CC-----
Confidence 99999999999999999999866554431 111 02234555665543210 10
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcc
Q 003466 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (818)
Q Consensus 588 ~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfG 667 (818)
..+.....+.+.+++.++ .++++|||||+||++|++||+++||++||++||++|++||++||+||||||||
T Consensus 214 ----~~~~~~~~~~~~l~~~~~-----~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfG 284 (472)
T PRK08742 214 ----SAEDYALQAADALQALFE-----QSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFG 284 (472)
T ss_pred ----CHHHHHHHHHHHHHHHHH-----hCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 111223335677888886 34679999999995499999999999999999999999999999999999999
Q ss_pred cCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC--------hH-----------------HHH---
Q 003466 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD--------SK-----------------LWD--- 719 (818)
Q Consensus 668 RtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~--------~~-----------------~~~--- 719 (818)
|||++|+++++||+|||+|+||+|||||+|+||+++++++++.+... .. ++.
T Consensus 285 RtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~ 364 (472)
T PRK08742 285 RTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDD 364 (472)
T ss_pred CCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999989999999999999876421 00 111
Q ss_pred ------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC---chHHHHHHHHHHHhCCceEeecCCEEEEE
Q 003466 720 ------------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY---GSLYAASLLKKLREDGVYMRPLGNVIYLM 784 (818)
Q Consensus 720 ------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~---~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ 784 (818)
..+++.+++++.|.+|||.|+|++++|+.+.....+ +...+..+.+.|+++||++.+.|++|||.
T Consensus 365 l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~vi~~~ 444 (472)
T PRK08742 365 VIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLGDVLYWM 444 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEecCCEEEEE
Confidence 123444567889999999999999999865322211 12345678899999999999989999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH
Q 003466 785 CGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 785 ppl~~t~edId~~~~~l~~~l~~l 808 (818)
||+++|++|||+++++|+++++++
T Consensus 445 PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 445 PPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999764
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-68 Score=605.19 Aligned_cols=393 Identities=25% Similarity=0.407 Sum_probs=316.0
Q ss_pred hhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc
Q 003466 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~ 433 (818)
.+.+..++|+|++++..+.+..|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~ 87 (453)
T PRK06943 15 VARSLRAVWHPCTQMKHHERLPLLPVARGEGA--WLYDRDGR----RYLDAISSWWVNLFGHA-NPRINAALKDQLDTLE 87 (453)
T ss_pred HHHhhcccccCCcCccccccCCCceEEecccC--EEEeCCCC----EEEEcchHHHHhcCCCC-CHHHHHHHHHHHHhcC
Confidence 44556779999988654322357889998887 79999999 99999999999999999 9999999999999988
Q ss_pred cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEc
Q 003466 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (818)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (818)
+.......+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |.|+..+|. ++|.+||+|+
T Consensus 88 ~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGseAve~AlKlA-~~~~~~rg~------------~~r~~Ii~~~ 153 (453)
T PRK06943 88 HAMLAGCTHEPAIELAERLAALTGGT-LGHAFFASDGASAVEIALKMS-FHAWRNRGR------------GDKREFVCLA 153 (453)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCCHHHHHHHHHHH-HHHHHHhCC------------CCCCEEEEEC
Confidence 77655678999999999999988754 579999999999999999999 566544443 5678999999
Q ss_pred CCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCc
Q 003466 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (818)
Q Consensus 514 ~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~ 593 (818)
++|||+|.+++++++...++..| .|. + ++..+++.|+.+... +. ...
T Consensus 154 ~~yHG~t~gals~~~~~~~~~~~-~~~-------~--------~~~~~~~~p~~~~~~---------------~~--~~~ 200 (453)
T PRK06943 154 NGYHGETIGALGVTDVALFKDAY-DPL-------I--------RHAHVVASPDARGAR---------------PG--ETA 200 (453)
T ss_pred CCcCCCcHHhhcccCChhhhccc-ccC-------C--------CCCEEECCCCccccc---------------cC--CCH
Confidence 99999999999999876555431 111 0 122344445432110 00 011
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc
Q 003466 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (818)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~ 673 (818)
+.+...+.+.+++.|+ .+++++||||+||++|++||+++||++||++|+++|++||++||+|||+|||||||+||
T Consensus 201 ~~~~~~~~~~l~~~l~-----~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f 275 (453)
T PRK06943 201 ADVAARALADVRRLFA-----ERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF 275 (453)
T ss_pred HHHHHHHHHHHHHHHH-----hCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh
Confidence 2333345577888886 35689999999994499999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC--------h-H----------------HHH---------
Q 003466 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD--------S-K----------------LWD--------- 719 (818)
Q Consensus 674 a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~--------~-~----------------~~~--------- 719 (818)
+++++||+|||+|+||+|||||+|+||+++++++++.+... . . +++
T Consensus 276 a~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~ 355 (453)
T PRK06943 276 ACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNA 355 (453)
T ss_pred HHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999876421 0 0 111
Q ss_pred ---HHH---HHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHH
Q 003466 720 ---LEL---IQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEV 793 (818)
Q Consensus 720 ---~~l---~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~ed 793 (818)
+.+ ++.+.+++.|.+|||.|+|+++++..+. .+....+..+.+.|+++||++.+.++.++|.||+++|++|
T Consensus 356 ~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~~~~---~~~~~~~~~i~~~~~~~Gll~~~~g~~l~~~Ppl~it~~e 432 (453)
T PRK06943 356 RKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVALDG---DAARTFSRRFFEAALERELLLRPIGTTVYLMPPYVLDDDE 432 (453)
T ss_pred HHHHHHHHHHHHHhcCCCEEeEeccccEEEEEEccCC---CcchHHHHHHHHHHHHCCcEEEecCCEEEEeCCCcCCHHH
Confidence 112 2233557889999999999999997542 1122346788999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003466 794 CSQLLLKLYQRLEEF 808 (818)
Q Consensus 794 Id~~~~~l~~~l~~l 808 (818)
||+++++|+++|+++
T Consensus 433 id~~~~~l~~al~~~ 447 (453)
T PRK06943 433 IAWLAERTRATLDAT 447 (453)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=568.41 Aligned_cols=362 Identities=23% Similarity=0.280 Sum_probs=309.0
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|++|++++|. ||||.+|+ +|||+.+|+|++++||| ||+|++|+.+|+.++.|.+ ..+.+++..+||++|+
T Consensus 31 ~~Pl~Iv~~~~~--ylyDe~G~----ryLD~f~Gi~tvslGHc-hP~v~~a~~kQl~~l~H~t-~~~~~~pi~~~Ae~L~ 102 (442)
T KOG1404|consen 31 KKPLVIVRGEGQ--YLYDEEGR----RYLDAFGGIVTVSLGHC-HPDVVAAAVKQLKKLYHTT-SGYLNPPIHDLAEALV 102 (442)
T ss_pred cCCceEEecceE--EEEcCCCc----eeehhhCCeEEEEcCCC-ChHHHHHHHHhhhhhEEee-ccccCCcHHHHHHHHH
Confidence 457899998886 79999999 99999999999999999 9999999999999888765 4688999999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+.+|.+ +.++||+||||||||.||+|| |+||+. .+||+++++|||.|..++++|+.+.++
T Consensus 103 s~~P~~-l~~vfF~nsGsEANelal~ma-r~Yt~~------------------~diIa~r~~YHG~t~~t~glt~~~~~k 162 (442)
T KOG1404|consen 103 SKLPGD-LKVVFFVNSGSEANELALKMA-RLYTGN------------------LDIIARRNSYHGNTLYTLGLTGLSPWK 162 (442)
T ss_pred HhCCCC-ceEEEEecCCchHHHHHHHHH-HHhcCC------------------ceEEEeeccccCCchhhcccccCCccc
Confidence 999865 789999999999999999999 899875 499999999999999999999987666
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
..+ |.+ ..+++|..-|++|+.. |.+ +. +++..+.|.+.++..+..
T Consensus 163 ~~~--------------~~~--~~~~~~~~~Pdp~r~~--------~~~-------~~-~~e~~d~~a~~l~d~i~~--- 207 (442)
T KOG1404|consen 163 QNF--------------PGV--ASGVHHTMNPDPYRGI--------FGG-------SN-EEEASDRYAKELEDLILY--- 207 (442)
T ss_pred ccC--------------CCC--CCcccccCCCCccccc--------CCC-------Cc-hhhhHHHHHHHHHHHHHh---
Confidence 531 111 1245677778888653 222 11 334455666777777764
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
..++.+||+|.||| ||.||++.+|++||++++++|+++|.++|+|||||||||||.+|++|.+||.|||+|++|+||+
T Consensus 208 -~~~~~vAafiaEtI-qGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGn 285 (442)
T KOG1404|consen 208 -DGPETVAAFIAETI-QGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGN 285 (442)
T ss_pred -cCCCceeEEEeehh-ccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccC
Confidence 56788999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh-H-----------------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 694 GVIPLAATLATNAVFDSFVGDS-K-----------------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~-~-----------------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
| +|+|||+++++|++.+.... . ++.+++.+...+||+|++|||
T Consensus 286 G-~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG 364 (442)
T KOG1404|consen 286 G-FPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRG 364 (442)
T ss_pred C-CcceeeecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeeccc
Confidence 9 89999999999999886654 1 222344444578999999999
Q ss_pred eeeEEEEEEecCc-ccCCCchHHHHHHHHHHHhCCceEee---cCCEEEEECCCCChHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAG-CNAGYGSLYAASLLKKLREDGVYMRP---LGNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 738 ~Gl~~~iel~~~~-~~~~~~~~~a~~~~~~l~e~Gvlv~p---~g~~ir~~ppl~~t~edId~~~~~l 801 (818)
+|+|+|+|+++++ ...+|+......+.+.|.++|+++.- .|+++|+.||+++|++|||.+++.+
T Consensus 365 ~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 365 RGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred ceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 9999999999986 34455566777889999999999975 3689999999999999998888866
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-68 Score=604.95 Aligned_cols=393 Identities=23% Similarity=0.286 Sum_probs=316.1
Q ss_pred cchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhh
Q 003466 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (818)
Q Consensus 352 ~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~ 431 (818)
++.+++.+++|+|++.... ..|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~---~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~ 78 (451)
T PRK07678 9 ELLAKDEQYVWHGMKPYNP---NATMVVAKAEGA--WVTDIQGN----RYLDGMSGLWCVNVGYG-RKELAEAAYEQLKT 78 (451)
T ss_pred HHHHHhhcccCCCcccccc---CCCeeEEeeeee--EEEeCCCC----EEEEccccHHhhcCCCC-CHHHHHHHHHHHHh
Confidence 4455566778998754321 347888898886 79999999 99999999999999999 99999999999999
Q ss_pred cccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEE
Q 003466 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (818)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (818)
+.+... .+.+++..+||++|++++|. .++|+|++|||||||+|||+| |.||+++|. ++|.+||+
T Consensus 79 ~~~~~~-~~~~~~~~~lae~l~~~~~~--~~~v~f~~sGseA~e~AlklA-r~~t~~~g~------------~~r~~ii~ 142 (451)
T PRK07678 79 LSYFPL-TQSHEPAIKLAEKLNEWLGG--EYVIFFSNSGSEANETAFKIA-RQYHAQKGE------------PHRYKFIS 142 (451)
T ss_pred cCcccc-ccCCHHHHHHHHHHHHhCCC--CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEE
Confidence 876543 46789999999999999875 369999999999999999999 788866554 66889999
Q ss_pred EcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhccc
Q 003466 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (818)
Q Consensus 512 ~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~ 591 (818)
|+++|||+|.+++++++...++.. |.+ ..+++.+++.|+.++.+ +..
T Consensus 143 ~~~~yHG~t~~als~~~~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~--------~~~--------- 189 (451)
T PRK07678 143 RYRAYHGNSMGALAATGQAQRKYK-----YEP-----------LAPGFLHVPPPDCYRMP--------GIE--------- 189 (451)
T ss_pred ECCCcCCccHHHhhcCCCcccccc-----cCC-----------CCCCCEEeCCCcccccc--------ccC---------
Confidence 999999999999999986654432 110 01234455566554321 110
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc
Q 003466 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (818)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~ 671 (818)
..+.....+.+.+++.|+. .+++++||||+||| |++||+++||++||++||++|++||++||+|||||||||||+
T Consensus 190 ~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPi-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 264 (451)
T PRK07678 190 SEDIYDLECVKEIDRVMTW----ELSETIAAVIMEPI-ITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK 264 (451)
T ss_pred ChHHHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch
Confidence 0112334455677888863 34679999999998 999999999999999999999999999999999999999999
Q ss_pred cchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh------H-----------------------------
Q 003466 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS------K----------------------------- 716 (818)
Q Consensus 672 ~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~------~----------------------------- 716 (818)
+|+++++||+|||+|+||+|||||+|+||+++++++++.+.... +
T Consensus 265 ~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~ 344 (451)
T PRK07678 265 AFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIER 344 (451)
T ss_pred hHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999998775310 1
Q ss_pred ------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCC-CchHHHHHHHHHHHhCCceEeec-------CCEEE
Q 003466 717 ------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-YGSLYAASLLKKLREDGVYMRPL-------GNVIY 782 (818)
Q Consensus 717 ------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~-~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir 782 (818)
++.+.+.+.+++++.+.+|||.|+|+++++..+..... .+...+..++..|+++||++.+. +++||
T Consensus 345 ~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lr 424 (451)
T PRK07678 345 SAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLT 424 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEE
Confidence 12223334556788899999999999999976532222 23456778999999999999764 37899
Q ss_pred EECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 783 LMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 783 ~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|+||++||++|||+++++++++++++
T Consensus 425 l~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 425 LSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999765
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-67 Score=600.92 Aligned_cols=397 Identities=20% Similarity=0.243 Sum_probs=319.6
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
+.+.+.+++|+||+++..+.+..|+++++++|. |+||.||| +|||+++|+|+.++||+ ||+|++|+++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~ 83 (466)
T PRK07036 11 LAQADKRHLLHPWHDFSSLGKEGSLVIVEAEGI--YVTDADGR----RYLDGIGGMWCVNVGYG-REEMADAIADQARRL 83 (466)
T ss_pred HHHHhhcccccCccCccccccCCCceEEeCcee--EEEECCCC----EEEECcccHHhhcCCCC-CHHHHHHHHHHHHhC
Confidence 345567789999988755433457889998886 79999999 99999999999999999 999999999999998
Q ss_pred ccccCCC-CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEE
Q 003466 433 GHVMFPE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (818)
Q Consensus 433 ~~~~~~~-~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (818)
.+.+... ..+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++|.+||+
T Consensus 84 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------t~r~~Ii~ 149 (466)
T PRK07036 84 PYYTPFGDMTNAPAAELAAKLAELAPGD-LNHVFLTTGGSTAVDSALRFV-HYYFNVRGR------------PAKKHIIT 149 (466)
T ss_pred cccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 7765433 67999999999999988754 689999999999999999999 788765543 56789999
Q ss_pred EcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhccc
Q 003466 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (818)
Q Consensus 512 ~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~ 591 (818)
|+++|||+|.+++++++.+.++.. |.+ . .++..+++.|++++++. +.
T Consensus 150 ~~~~YHG~t~~a~s~~~~~~~~~~-----~~~-------~----~~~~~~~~~p~~~~~~~--------~~--------- 196 (466)
T PRK07036 150 RGDAYHGSTYLTASLTGKAADRTE-----FDY-------A----SDLVHHLSSPNPYRRPA--------GM--------- 196 (466)
T ss_pred EcCccCCccHhhhcccCCCccccc-----ccC-------C----CCCcEEecCCccccccc--------CC---------
Confidence 999999999999999986654432 111 0 12234556665543211 00
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc
Q 003466 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (818)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~ 671 (818)
........+.+.+++.+.. .+++++||||+||| |++||+++||++||++|+++|++||++||+|||+|||||||+
T Consensus 197 ~~~~~~~~~~~~~~~~i~~----~~~~~iAavi~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 271 (466)
T PRK07036 197 SEAAFCDFLVDEFEDKILS----LGADNIAAFIAEPI-LGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH 271 (466)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch
Confidence 0112233344566666653 45689999999998 999999999999999999999999999999999999999999
Q ss_pred cchhc-ccCCCCcEEEecccccCCccccceeecchHHHhhccCC---------h-H------------------------
Q 003466 672 ETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD---------S-K------------------------ 716 (818)
Q Consensus 672 ~~a~e-~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~---------~-~------------------------ 716 (818)
+|+++ ++|++|||+|+||+|||||+|+||+++++++++.+... + .
T Consensus 272 ~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~ 351 (466)
T PRK07036 272 FFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLC 351 (466)
T ss_pred hhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 99998 78999999999999999999999999999999876421 0 0
Q ss_pred --------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCC---CchHHHHHHHHHHHhCCceEeecCCEEEEEC
Q 003466 717 --------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG---YGSLYAASLLKKLREDGVYMRPLGNVIYLMC 785 (818)
Q Consensus 717 --------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~---~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~p 785 (818)
++.+.+ +.+++++.+.+|||.|+|++++|+.+..... .+...+..+.+.|+++||++.+.++.+++.|
T Consensus 352 ~~~~~~g~~l~~~L-~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~l~P 430 (466)
T PRK07036 352 EHVREVGPYFEERL-ASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHLCVLSP 430 (466)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecCCEEEEeC
Confidence 122223 3346688899999999999999976532211 1234567889999999999999889999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHH
Q 003466 786 GPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 786 pl~~t~edId~~~~~l~~~l~~l~ 809 (818)
|+++|++|||+++++++++++++.
T Consensus 431 pl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 431 PLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998874
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-67 Score=600.27 Aligned_cols=399 Identities=20% Similarity=0.274 Sum_probs=319.8
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
+.+++.+++|+|++.+..+....|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~ 80 (460)
T PRK06105 8 LEARDIAYHLHPYTNARRHEEEGPLVIERGEGI--YVYDDAGK----RYIEGMAGLWSVALGFS-EQRLVEAAARQMKKL 80 (460)
T ss_pred HHHhhhhhcccCCcccccccccCCceEEeeeEE--EEEECCCC----EEEEcchhHHhccCCCC-CHHHHHHHHHHHHhC
Confidence 456677889999987644322357888898886 79999999 99999999999999999 999999999999998
Q ss_pred cccc-CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEE
Q 003466 433 GHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (818)
Q Consensus 433 ~~~~-~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (818)
++.. +..+.++++.+|+++|++.+|.+ +++|+|++|||||||+|||+| |+|++.+|. ++|.+||+
T Consensus 81 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlKla-r~~~~~~g~------------t~r~~il~ 146 (460)
T PRK06105 81 PFYHTFSHKSHGPVIDLAEKLVAMAPVP-MSKVFFTNSGSEANDTVVKLV-WYYNNALGR------------PEKKKIIS 146 (460)
T ss_pred CCeecccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEE
Confidence 7643 22357999999999999998754 689999999999999999999 777654443 56889999
Q ss_pred EcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhccc
Q 003466 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (818)
Q Consensus 512 ~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~ 591 (818)
++++|||+|.+++++++.+.++.. .+ ++ .++..+++.|+++++ ++. ..
T Consensus 147 ~~~~yHG~t~~a~s~t~~~~~~~~--------~~----~~----~~~~~~~~~p~~~~~----------~~~------~~ 194 (460)
T PRK06105 147 RQRGYHGVTIASASLTGLPNNHRS--------FD----LP----LDRILHTGCPHYYRF----------GLP------GE 194 (460)
T ss_pred ecCccCCcchhheeccCCcccccc--------cC----CC----CCCCEEcCCCccccc----------ccC------CC
Confidence 999999999999999986544332 11 11 123455666655431 111 00
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc
Q 003466 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (818)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~ 671 (818)
..+.....+.+.+++.+.. .+++++||||+||| |++||++++|++||++|+++|++||++||+|||||||||||+
T Consensus 195 ~~~~~~~~~~~~le~~~~~----~~~~~iAavIvEPi-qg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 195 SEEAFATRLANELEALILA----EGPDTIAAFIGEPV-MGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 1123334456778888753 34678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC----------hH-------------------------
Q 003466 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD----------SK------------------------- 716 (818)
Q Consensus 672 ~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~----------~~------------------------- 716 (818)
+|+++++||+|||+|+||+|||||+|+||+++++++++.+... ..
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~ 349 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVG 349 (460)
T ss_pred hhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999999989999999999999876421 00
Q ss_pred -------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC-CCc--hHHHHHHHHHHHhCCceEeecCCEEEEECC
Q 003466 717 -------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GYG--SLYAASLLKKLREDGVYMRPLGNVIYLMCG 786 (818)
Q Consensus 717 -------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~~~--~~~a~~~~~~l~e~Gvlv~p~g~~ir~~pp 786 (818)
++.+.+.+ +++++.|.+|||.|+|++|++..+.... .++ ...+..+...|+++||++.+.+++++|.||
T Consensus 350 ~v~~~g~~l~~~L~~-l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g~~i~l~Pp 428 (460)
T PRK06105 350 NAAERGARLQARLRA-LADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMGDTLAFCPP 428 (460)
T ss_pred HHHHHHHHHHHHHHH-hhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEecCCEEEEECC
Confidence 12223333 3678889999999999999997543211 111 234667889999999999998899999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 003466 787 PCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 787 l~~t~edId~~~~~l~~~l~~l~~ 810 (818)
+++|++|||+++++|+++++++.+
T Consensus 429 l~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 429 LIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-67 Score=600.64 Aligned_cols=396 Identities=26% Similarity=0.421 Sum_probs=317.3
Q ss_pred hhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc
Q 003466 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~ 433 (818)
.+++..+.|+|+++...+....|.++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~ 80 (466)
T PRK07030 8 MQRDLKVLWHPCTQMKDHEQLPLIPIRRGEGV--WLEDFEGK----RYLDAVSSWWVNVFGHA-NPRINQRIKDQVDQLE 80 (466)
T ss_pred HhhhhcccccccccccccccCCCceEEeeecc--EEEECCCC----EEEEcchhHHhhcCCCC-CHHHHHHHHHHHHhcC
Confidence 34466778999987643322235678898886 79999999 99999999999999999 9999999999999988
Q ss_pred cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEc
Q 003466 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (818)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (818)
+....++.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|+..+|. ++|.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlKlA-r~~~~~~g~------------t~r~~ii~~~ 146 (466)
T PRK07030 81 HVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALKMS-FHYWRNRGK------------PRKKRFVTLT 146 (466)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHHhCC------------CCCcEEEEEC
Confidence 76655678999999999999988744 689999999999999999999 677544443 5678999999
Q ss_pred CCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCc
Q 003466 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (818)
Q Consensus 514 ~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~ 593 (818)
++|||+|.+++++++...++..+ ++. .++..+++.|+++++.. + ...
T Consensus 147 ~~yHG~t~ga~s~~~~~~~~~~~--------~p~--------~~~~~~~p~~~~~~~~~--------~---------~~~ 193 (466)
T PRK07030 147 NSYHGETLAAMSVGDVALFTETY--------KPL--------LLDTIKVPSPDCYLRPE--------G---------MSW 193 (466)
T ss_pred CCcCcccHHHHhccCCccccccC--------Ccc--------CCCCEEcCCCCcccccc--------C---------CCH
Confidence 99999999999999866554431 111 12334556665553211 0 011
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc
Q 003466 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (818)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~ 673 (818)
+.....+.+.+++.+. .+++++||||+||++|++||++++|++||++||++|++||++||+|||+|||||||++|
T Consensus 194 ~~~~~~~l~~le~~~~-----~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~ 268 (466)
T PRK07030 194 EEHSRRMFAHMEQTLA-----EHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF 268 (466)
T ss_pred HHHHHHHHHHHHHHHH-----hCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch
Confidence 2233445677888886 35689999999993399999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC-------hH-------------------HHH--------
Q 003466 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------SK-------------------LWD-------- 719 (818)
Q Consensus 674 a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-------~~-------------------~~~-------- 719 (818)
+++++||+|||+|+||+|||||+|+||+++++++++.+... .+ +++
T Consensus 269 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~ 348 (466)
T PRK07030 269 ACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENN 348 (466)
T ss_pred HHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999876321 00 111
Q ss_pred ----HHH---HHHHHcCCCeeEEEeeeeEEEEEEecCcccC-CC--chHHHHHHHHHHHhCCceEeecCCEEEEECCCCC
Q 003466 720 ----LEL---IQQISSHRTVQRVVALGTLCAIELQAAGCNA-GY--GSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 789 (818)
Q Consensus 720 ----~~l---~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~~--~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~ 789 (818)
+.+ ++.+.+++.+.+|||.|+|+++++..+.... ++ +...+..+.+.|+++||++.+.+++++|.||+++
T Consensus 349 ~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~i~~~Ppl~i 428 (466)
T PRK07030 349 RALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLGSVVYFLPPYVI 428 (466)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecCCEEEEECCccC
Confidence 112 2334568889999999999999997653211 11 1223567889999999999998899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 003466 790 SPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 790 t~edId~~~~~l~~~l~~l 808 (818)
|++||++++++++++++++
T Consensus 429 t~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 429 TPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-67 Score=598.51 Aligned_cols=398 Identities=20% Similarity=0.271 Sum_probs=315.7
Q ss_pred hhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc
Q 003466 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~ 433 (818)
.+.+..++|+|+++++.+....|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~ 83 (456)
T PRK07480 11 QALDAAHHLHPFSDMKALNEKGSRVITRAEGV--YLWDSEGN----KILDGMAGLWCVNVGYG-RKELADAAARQMRELP 83 (456)
T ss_pred HhhhhcccccCcccccccccCCCceEEeceee--EEEeCCCC----EEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcC
Confidence 34456778999987755422357788898885 79999999 99999999999999999 9999999999999987
Q ss_pred cccC-CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 434 HVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 434 ~~~~-~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
+... .++.+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|
T Consensus 84 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~ 149 (456)
T PRK07480 84 YYNTFFKTTHPPAIELAAKLAEVAPPG-FNHVFFTNSGSEANDTVLRMV-RHYWALKGK------------PQKKVIISR 149 (456)
T ss_pred CcccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 6542 2467999999999999998754 689999999999999999999 788765554 567899999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+++|||+|.+++++++...++.. .+ ++ .++..+++.|+++++.. + .+
T Consensus 150 ~~~yHG~tl~a~s~~g~~~~~~~--------~~----~~----~~~~~~~~~p~~~~~~~---------~--------~~ 196 (456)
T PRK07480 150 KNGYHGSTVAGASLGGMKYMHEQ--------GD----LP----IPGIVHIDQPYWFGEGG---------D--------MT 196 (456)
T ss_pred CCCcCCcchhhhhccCChhhhcc--------cC----CC----CCCCeecCCCccccccc---------C--------CC
Confidence 99999999999999986543331 01 00 12334556665554210 0 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
.......+.+.+++.+.+ .+++++||||+||| |++||+++||++||++|+++|++||++||+|||||||||||++
T Consensus 197 ~~~~~~~~~~~l~~~~~~----~~~~~vAAvi~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 271 (456)
T PRK07480 197 PEEFGLAAARQLEAKILE----LGADNVAAFIGEPI-QGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEW 271 (456)
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 122333345677665543 45679999999998 9999999999999999999999999999999999999999999
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhcc--CCh--H-------------------HHH----------
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV--GDS--K-------------------LWD---------- 719 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~--~~~--~-------------------~~~---------- 719 (818)
|+++++||+|||+|+||+|||||+|+||+++++++++.+. ... + +++
T Consensus 272 ~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~ 351 (456)
T PRK07480 272 FGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRD 351 (456)
T ss_pred hhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999999999999999999998872 110 0 110
Q ss_pred ---HHHH---HHHHcCCCeeEEEeeeeEEEEEEecCccc-CCCc--hHHHHHHHHHHHhCCceEeecCCEEEEECCCCCh
Q 003466 720 ---LELI---QQISSHRTVQRVVALGTLCAIELQAAGCN-AGYG--SLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSS 790 (818)
Q Consensus 720 ---~~l~---~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-~~~~--~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t 790 (818)
+.+. +.+.+++.+.+|||.|+|++++++.+... ..+. ......+.+.|+++||++.+.+++++|.||+++|
T Consensus 352 ~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~l~~~Ppl~it 431 (456)
T PRK07480 352 DTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMIISPPLVIT 431 (456)
T ss_pred HHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeecCCEEEEECCCCCC
Confidence 1121 22456788999999999999999765321 1111 1234567889999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003466 791 PEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 791 ~edId~~~~~l~~~l~~l~~ 810 (818)
++|||+++++|++++.++.+
T Consensus 432 ~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 432 HAEIDELVEKARKALDATAA 451 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-67 Score=598.91 Aligned_cols=397 Identities=27% Similarity=0.412 Sum_probs=317.9
Q ss_pred hhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc
Q 003466 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~ 433 (818)
.+++..++|+|++++..+....|+++++++|. ||||.||| +|||+++|+|+.++||+ ||+|++|+++|++++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~ 89 (460)
T PRK06916 17 SEKNKAYVWHPFTQMKDYLEEDPLIIERGEGR--KLYDVNGN----EYYDGVSSIWLNVHGHQ-VPELDEAIREQLNKIA 89 (460)
T ss_pred HHHHhhccccccccccccccCCCeeEEecccc--EEEeCCCC----EEEEcchhHHHhhcCCC-CHHHHHHHHHHHHhCC
Confidence 44556778999886543322457899998887 79999999 99999999999999999 9999999999999988
Q ss_pred cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEc
Q 003466 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (818)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (818)
+.......+++..+||++|++++|.+ +++|+|+||||||||+|||+| |.|+..+|. ++|.+||+|+
T Consensus 90 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlklA-r~~~~~~g~------------tgr~~ii~~~ 155 (460)
T PRK06916 90 HSTLLGLANVPSILLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMA-FQYWQNKGK------------PKKQRFVTLK 155 (460)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEC
Confidence 76554567999999999999998754 689999999999999999999 777765554 6688999999
Q ss_pred CCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCc
Q 003466 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (818)
Q Consensus 514 ~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~ 593 (818)
++|||+|.+++++++...++..| . +. .++..+++.|+.+++. ++ .+.
T Consensus 156 ~~YHG~t~~als~s~~~~~~~~~-----~---~~--------~~~~~~~p~p~~~~~~--------~~---------~~~ 202 (460)
T PRK06916 156 NAYHGDTIGAVSVGAIDLFHQVY-----S---SL--------LFEAIKMPYPYTYRSP--------YG---------NDK 202 (460)
T ss_pred CcCCcccHHhHhccCCccccccc-----C---CC--------CCCCEEeCCCcccccc--------cC---------CCh
Confidence 99999999999999866554431 1 00 1223455666554321 11 011
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc
Q 003466 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (818)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~ 673 (818)
+.....+.+.+++.++ .+++++||||+||++|++||+++||++||++|+++|++||++||+|||+|||||||++|
T Consensus 203 ~~~~~~~~~~l~~~l~-----~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~ 277 (460)
T PRK06916 203 AEIVKKHLEELEELLK-----EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF 277 (460)
T ss_pred HHHHHHHHHHHHHHHH-----hCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh
Confidence 2233345577788886 35689999999994499999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC---------h-H----------------HHH--------
Q 003466 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD---------S-K----------------LWD-------- 719 (818)
Q Consensus 674 a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~---------~-~----------------~~~-------- 719 (818)
+++++||+|||+|+||+|||||+|+||+++++++++.+... . . +++
T Consensus 278 a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~ 357 (460)
T PRK06916 278 ACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQV 357 (460)
T ss_pred HHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999865310 0 0 111
Q ss_pred ----HH---HHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC---chHHHHHHHHHHHhCCceEeecCCEEEEECCCCC
Q 003466 720 ----LE---LIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY---GSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 789 (818)
Q Consensus 720 ----~~---l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~---~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~ 789 (818)
+. .++.+.+++.+.+|||.|+|+++++..+.....+ +...+..+.+.|+++||++.+.|++++|.||+++
T Consensus 358 ~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~l~~~Ppl~i 437 (460)
T PRK06916 358 ARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLGNTIVFMPPLAS 437 (460)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecCCEEEEeCCccc
Confidence 11 1233445788999999999999999865322111 1223567889999999999998899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003466 790 SPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 790 t~edId~~~~~l~~~l~~l~ 809 (818)
|++|||+++++|+++++++.
T Consensus 438 t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 438 TIDELDEMLRILYKAISDVT 457 (460)
T ss_pred CHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998754
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=596.28 Aligned_cols=396 Identities=17% Similarity=0.206 Sum_probs=314.2
Q ss_pred hhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc
Q 003466 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~ 433 (818)
.+.+..+.|+|++++..+....|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~A~~~q~~~~~ 87 (460)
T PRK12403 15 QAADAAHHIHAFLDQKALNAEGPRVMVRGEGL--HLWDNDGK----RYLDGMSGLWCTNLGYG-RKDLAAAAARQMEQLP 87 (460)
T ss_pred HHhhhcccccccccccccccCCCceEEeceee--EEEeCCCC----EEEECchhHHhhcCCCC-CHHHHHHHHHHHHhCC
Confidence 34456778999987654322457889998886 79999999 99999999999999999 9999999999999988
Q ss_pred cccC-CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 434 HVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 434 ~~~~-~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
+.+. .++.++++.+||++|++++|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||.+
T Consensus 88 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AiklA-r~~~~~~g~------------~~r~~ii~~ 153 (460)
T PRK12403 88 YYNMFFHTTHPAVIELSELLFSLLPGH-YSHAIYTNSGSEANEVLIRTV-RRYWQVLGK------------PQKKIMIGR 153 (460)
T ss_pred CeecccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC------------CCCcEEEEE
Confidence 7543 2457899999999999998754 589999999999999999999 777654443 557789999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
.++|||+|.+++++++.+.++.. +. ..++..+++.|++|++.. +. .
T Consensus 154 ~~~yHG~t~~~~s~s~~~~~~~~---------~~--------~~~~~~~~~~p~~~~~~~---------~~--------~ 199 (460)
T PRK12403 154 WNGYHGSTLAATALGGMKFMHEM---------GG--------LIPDVAHIDEPYWYANGG---------EL--------T 199 (460)
T ss_pred CCCcCcccHhhhhcCCCcccccc---------CC--------CCCCCEEeCCCccccccc---------CC--------C
Confidence 99999999999999986543321 00 012345666676654210 10 0
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
.......+.+.+++.+.+ .+++++||||+||| |++||+++||++||++|+++|++||++||+|||||||||||++
T Consensus 200 ~~~~~~~~~~~le~~~~~----~~~~~iaavI~Epv-~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~ 274 (460)
T PRK12403 200 PAEFGRRAALQLEEKILE----LGAENVAGFVAEPF-QGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEW 274 (460)
T ss_pred hHHHHHHHHHHHHHHHHH----hCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh
Confidence 112233344667666643 34578999999998 9999999999999999999999999999999999999999999
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC--------hH---------------HH-----------
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD--------SK---------------LW----------- 718 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~--------~~---------------~~----------- 718 (818)
|+++++||+|||+|+||+|||||+|+||+++++++++.+... .. ++
T Consensus 275 ~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~ 354 (460)
T PRK12403 275 FAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKD 354 (460)
T ss_pred hhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999999999988999999999999877421 00 11
Q ss_pred --HHHH----HHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC-c--hHHHHHHHHHHHhCCceEeecCCEEEEECCCCC
Q 003466 719 --DLEL----IQQISSHRTVQRVVALGTLCAIELQAAGCNAGY-G--SLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 789 (818)
Q Consensus 719 --~~~l----~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~-~--~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~ 789 (818)
.+.+ .+..++++.+.+|||.|+|++++|+.+.....+ . ......+.+.|+++||++.+.+++++|+||+++
T Consensus 355 ~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~l~Ppl~i 434 (460)
T PRK12403 355 DTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMIMAPALVA 434 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecCCEEEEECCCCC
Confidence 0112 223356888999999999999999765322111 1 123455778889999999988888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003466 790 SPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 790 t~edId~~~~~l~~~l~~l~ 809 (818)
|++|||+++++++++++++.
T Consensus 435 t~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 435 GRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998874
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-66 Score=591.21 Aligned_cols=387 Identities=21% Similarity=0.225 Sum_probs=309.8
Q ss_pred hhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccc
Q 003466 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (818)
Q Consensus 355 ~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~ 434 (818)
+.+..++|+||+.+.. ..|+++++++|. ||||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+
T Consensus 18 ~~~~~~~~~~~~~~~~---~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~ 87 (451)
T PRK06062 18 ALDRAHVFHSWSAQGK---INPMVIAGAEGS--YVWDYEGR----RYLDFSSQLVNTNIGHQ-HPKVVAAIQEQAARLCT 87 (451)
T ss_pred Hhhhhhcccccccccc---CCCceEEeceee--EEEECCCC----EEEEcccCHHhhcCCCC-CHHHHHHHHHHHHhcCC
Confidence 4455678999876422 357788888886 79999999 99999999999999999 99999999999999877
Q ss_pred ccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcC
Q 003466 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (818)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~ 514 (818)
... .+.+++..+||++|++++|.+ +++|+|++|||||||+|||+| |.|++| .+||+|++
T Consensus 88 ~~~-~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~tgr------------------~~ii~~~~ 146 (451)
T PRK06062 88 VAP-AHANDARSEAARLIAERAPGD-LSKVFFTNGGADANEHAVRMA-RLHTGR------------------PKVLSAYR 146 (451)
T ss_pred cCC-ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCChHHHHHHHHHHH-HHhhCC------------------ceEEEEeC
Confidence 654 567999999999999998754 689999999999999999999 778654 58999999
Q ss_pred CCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCch
Q 003466 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (818)
Q Consensus 515 sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~ 594 (818)
+|||+|.+++++++.+.++.. .| ..++..+++.|++++++ |.. ..+ .
T Consensus 147 ~yHG~t~~als~~~~~~~~~~--~~---------------~~~~~~~~~~p~~~~~~--------~~~-------~~~-~ 193 (451)
T PRK06062 147 SYHGGTGSAINLTGDPRRWPN--DT---------------GRAGVVHFFGPFLYRSE--------FHA-------TTE-E 193 (451)
T ss_pred CCCCCCHHHHhhcCCcccccC--CC---------------CCCCCEEeCCCCccccc--------cCC-------CCh-H
Confidence 999999999999975533211 00 01233445555544321 110 001 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch
Q 003466 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (818)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a 674 (818)
++...+.+.+++.|+. .+++++||||+||| |+++|+++||++||++|+++|++||++||+|||||||||||++|+
T Consensus 194 ~~~~~~~~~le~~l~~----~~~~~iAaviiEPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a 268 (451)
T PRK06062 194 EECERALAHLERVIEL----EGPSTIAAILLESV-PGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFA 268 (451)
T ss_pred HHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHH
Confidence 2334456788888863 34578999999998 999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh--H-------------------HH------H--------
Q 003466 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS--K-------------------LW------D-------- 719 (818)
Q Consensus 675 ~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~--~-------------------~~------~-------- 719 (818)
++++||+|||+||||+|||||+|+||+++++++++.+.... + ++ +
T Consensus 269 ~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~ 348 (451)
T PRK06062 269 IEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAE 348 (451)
T ss_pred HHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999874321 1 11 1
Q ss_pred ---HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC-CCc-----hHHHHHHHHHHHhCCceEeecCCEEEEECCCCCh
Q 003466 720 ---LELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GYG-----SLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSS 790 (818)
Q Consensus 720 ---~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~~~-----~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t 790 (818)
+.+.+..++++.+.+|||.|+|+++++..+.... ..+ ...+..+++.|+++||++.+.++++||.||++||
T Consensus 349 ~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~lrl~ppl~~t 428 (451)
T PRK06062 349 VLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNRIHVVPPCTVT 428 (451)
T ss_pred HHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeecCCEEEEECCccCC
Confidence 1122222457889999999999999997542211 111 2346789999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003466 791 PEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 791 ~edId~~~~~l~~~l~~l~~ 810 (818)
++|||+++++|++++++++.
T Consensus 429 ~~eid~~~~~l~~~l~~~~~ 448 (451)
T PRK06062 429 EDEVREGLAILDAALAVADA 448 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988763
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-65 Score=586.45 Aligned_cols=378 Identities=19% Similarity=0.239 Sum_probs=302.3
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ||||.||| +||||+||+|+.++||+ ||+|++|+++|++++.+.....+.+++..+|+++|++
T Consensus 12 ~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 84 (443)
T PRK07483 12 TLPVAVAGEGI--YLIDATGK----RYLDASGGAAVSCLGHS-HPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVA 84 (443)
T ss_pred CCceEEeceEE--EEEeCCCC----EEEEcCccHhhhccCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 47788888876 79999999 99999999999999999 9999999999999987554334678999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.+|.+ +++|+|++|||||||+|||+| |.|+..+|. ++|.+||+|+++|||+|.+++++++...++.
T Consensus 85 ~~p~~-~~~v~f~~sGsEAve~AlklA-r~~~~~~g~------------~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~ 150 (443)
T PRK07483 85 AAPAG-LEHVYFVSGGSEAVEAALKLA-RQYFVEIGQ------------PQRRHFIARRQSYHGNTLGALAIGGNAWRRE 150 (443)
T ss_pred hCCCC-CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcCCcCHHHhhhcCCccccc
Confidence 88754 689999999999999999999 777655544 6688999999999999999999998654433
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. + ++.+ ++..+++.|++| ++.. . ......+...+.+.+++.+..
T Consensus 151 ~----~----~p~~--------~~~~~~~~~~~~------------~~~~--~--~~~~~~~~~~~~~~l~~~~~~---- 194 (443)
T PRK07483 151 P----F----APLL--------IEAHHVSPCYAY------------REQR--A--GESDEAYGQRLADELEAKILE---- 194 (443)
T ss_pred c----c----CCCC--------CCCEEeCCCccc------------cccc--c--CCCHHHHHHHHHHHHHHHHHh----
Confidence 2 1 1111 122344444333 2210 0 011123334456777776653
Q ss_pred CCCCcEEEEEEcccccc-CCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 615 KVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g-~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+++++||||+||| |+ .||+++||++||++|+++|++||++||+|||||||||||++|+++++||+|||+|+||+|||
T Consensus 195 ~~~~~iAAvivEPi-qg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~g 273 (443)
T PRK07483 195 LGPDTVAAFVAETV-VGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGA 273 (443)
T ss_pred cCCCceEEEEEeCc-ccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhcc
Confidence 45679999999998 98 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh----H-----------------------------------HHHHHHHHHHHcCCCeeE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS----K-----------------------------------LWDLELIQQISSHRTVQR 734 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~----~-----------------------------------~~~~~l~~~l~~~~~v~~ 734 (818)
||+|+||+++++++++.+.... + ++.+.+.+.+++++.+.+
T Consensus 274 G~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~ 353 (443)
T PRK07483 274 GYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGD 353 (443)
T ss_pred CccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeee
Confidence 9889999999999998764211 0 222333344567888999
Q ss_pred EEeeeeEEEEEEecCcccCCC---chHHHHHHHHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 735 VVALGTLCAIELQAAGCNAGY---GSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 735 vrg~Gl~~~iel~~~~~~~~~---~~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
|||.|+|+++++..+.....+ +...+..+.+.|+++||++.+. ++++||.||+++|++|||+++++|++
T Consensus 354 vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~ 433 (443)
T PRK07483 354 IRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGD 433 (443)
T ss_pred EeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999765322111 2235677899999999999864 47999999999999999999999999
Q ss_pred HHHHHHH
Q 003466 804 RLEEFDK 810 (818)
Q Consensus 804 ~l~~l~~ 810 (818)
+|.++.+
T Consensus 434 ~l~~~~~ 440 (443)
T PRK07483 434 AIDAALA 440 (443)
T ss_pred HHHHHHh
Confidence 9987654
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-65 Score=584.03 Aligned_cols=400 Identities=24% Similarity=0.316 Sum_probs=316.9
Q ss_pred cchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhh
Q 003466 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (818)
Q Consensus 352 ~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~ 431 (818)
++.+.+.+++||||++...+....|.++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Av~~q~~~ 83 (460)
T PRK06541 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGC--YIWDDRGK----RYLDGLAGLFVVQVGHG-RAELAEAAAKQAGT 83 (460)
T ss_pred HHHHHhhcccccCccCccccccCCCceEEeCccc--EEEeCCCC----EEEECCccHHhccCCCC-CHHHHHHHHHHHhh
Confidence 3456677899999998765432357788998886 79999999 99999999999999999 99999999999999
Q ss_pred cccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEE
Q 003466 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (818)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (818)
+.+.+...+.+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||+
T Consensus 84 ~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~ 149 (460)
T PRK06541 84 LAFFPLWSYAHPPAIELAERLAALAPGD-LNRVFFTTGGSEAVESAWKLA-KQYFKLTGK------------PGKHKVIS 149 (460)
T ss_pred CcCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 8876545678999999999999988754 689999999999999999999 777654443 56789999
Q ss_pred EcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhccc
Q 003466 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (818)
Q Consensus 512 ~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~ 591 (818)
|+++|||+|.+++++++.+.++..| .| . .++..+++.|+.++++ .|++
T Consensus 150 ~~~~yHG~t~~a~s~~~~~~~~~~~-~~-------~--------~~g~~~~~~~~~~~~~-------~~~~--------- 197 (460)
T PRK06541 150 RAIAYHGTTQGALAITGLPAFKAPF-EP-------L--------VPGGFRVPNTNFYRAP-------ELGD--------- 197 (460)
T ss_pred EcCcccCcchhhhcCcCChhhcccc-CC-------C--------CCCcEEeCCCcccccc-------ccCC---------
Confidence 9999999999999999866544321 01 0 1234455556544321 0111
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc
Q 003466 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (818)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~ 671 (818)
+...+...+.+.+++.++. .+++++||||+||| |+++|++++|++||++|+++|++||++||+|||||||||+|+
T Consensus 198 ~~~~~~~~~~~~l~~~l~~----~~~~~~Aavi~EPv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~ 272 (460)
T PRK06541 198 DPEAFGRWAADRIEEAIEF----EGPDTVAAVFLEPV-QNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE 272 (460)
T ss_pred CHHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch
Confidence 1123344556788888863 24678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh-------H----------------HHH---------
Q 003466 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-------K----------------LWD--------- 719 (818)
Q Consensus 672 ~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~-------~----------------~~~--------- 719 (818)
+|+++++|++|||+|+||+|||||+|+|++++++++++.+.... . ++.
T Consensus 273 ~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~ 352 (460)
T PRK06541 273 MFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVR 352 (460)
T ss_pred hhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999889999999999988664210 0 111
Q ss_pred ---HHHH---HHHHcCCCeeEEEeeeeEEEEEEecCcccC-CCch-----HHHHHHHHHHHhCCceEeec--C-CEEEEE
Q 003466 720 ---LELI---QQISSHRTVQRVVALGTLCAIELQAAGCNA-GYGS-----LYAASLLKKLREDGVYMRPL--G-NVIYLM 784 (818)
Q Consensus 720 ---~~l~---~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~~~~-----~~a~~~~~~l~e~Gvlv~p~--g-~~ir~~ 784 (818)
+.+. +.+..++.+.++||.|+|++++|..+.... .+.. .....+++.|+++||++.+. | ++|||.
T Consensus 353 ~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~ 432 (460)
T PRK06541 353 DNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLA 432 (460)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEE
Confidence 1122 223347788999999999999997643211 1111 12246788999999999873 4 799999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 785 CGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 785 ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
||+++|++|||+++++|++++.++.
T Consensus 433 Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 433 PPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997653
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-65 Score=580.40 Aligned_cols=380 Identities=29% Similarity=0.458 Sum_probs=306.1
Q ss_pred hhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc
Q 003466 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~ 433 (818)
.+.+.+++|+||++... ..++.++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~ 77 (429)
T PRK06173 7 LELDRQHIWHPYSSVTD--PIPVYPVERADGV--MITLKDGR----RLIDGMSSWWAALHGYN-HPRLNAAATNQLAKMS 77 (429)
T ss_pred hhhhhcccccccccccc--cCCCceEEeceee--EEEcCCCC----EEEEccchHHhccCCCC-CHHHHHHHHHHHHhcC
Confidence 34456778999876532 1233468888775 79999999 99999999999999999 9999999999999988
Q ss_pred cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEc
Q 003466 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (818)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (818)
+..+..+.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|+
T Consensus 78 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~~~ 143 (429)
T PRK06173 78 HIMFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMA-LQYQQAKGE------------VQRTKFATIR 143 (429)
T ss_pred CccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHHhCC------------CCCcEEEEEC
Confidence 76655568999999999999998754 789999999999999999999 777765544 6688999999
Q ss_pred CCCCCCccccccccCCC-CCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 514 GSYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 514 ~sYHG~t~~als~tg~~-~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
++|||.|.+++++++.. .++.. +. +.. +...+++.|+.. ++
T Consensus 144 ~~yHG~t~~a~s~~~~~~~~~~~-----~~---~~~--------~~~~~~~~p~~~-----------~~----------- 185 (429)
T PRK06173 144 SGYHGDTWHAMSVCDPVTGMHGL-----FN---HSL--------PVQYFLPQPSIK-----------FG----------- 185 (429)
T ss_pred CCcCCcchhhhccCCCchhhhhc-----cc---ccC--------CCCeEeCCCCcc-----------cc-----------
Confidence 99999999999998743 23322 10 000 112334444321 10
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
..+...+.+.+++.|+ .+++++||||+|||+|++||+++||++|+++|+++|++||++||+|||||||||||++
T Consensus 186 -~~~~~~~l~~l~~~i~-----~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~ 259 (429)
T PRK06173 186 -EEWNDEAIEPLQDLLE-----QKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKL 259 (429)
T ss_pred -hhHHHHHHHHHHHHHH-----hCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcc
Confidence 1222334567788886 3467899999999559999999999999999999999999999999999999999999
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC-------h--H---------------HHH---------
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------S--K---------------LWD--------- 719 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-------~--~---------------~~~--------- 719 (818)
|+++++|++|||+||||+|+|||+|+|++++++++++.+... + . ++.
T Consensus 260 ~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~ 339 (429)
T PRK06173 260 FALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQ 339 (429)
T ss_pred hHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999876421 0 0 111
Q ss_pred ---HHHHHHH---HcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHH
Q 003466 720 ---LELIQQI---SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEV 793 (818)
Q Consensus 720 ---~~l~~~l---~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~ed 793 (818)
+.+.+.| ..++.+.+|||.|+|+++++... ..+..+++.|+++||++.+.|++|||.||+++|++|
T Consensus 340 ~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~--------~~~~~i~~~l~e~Gi~v~~~g~~l~~~Ppl~it~~e 411 (429)
T PRK06173 340 RIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEP--------VNMATLQPRFVEHGIWVRPFGKLVYIMPPFIISPDE 411 (429)
T ss_pred HHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCc--------ccHHHHHHHHHHCCeEEEecCCEEEEeCCccCCHHH
Confidence 1223333 35677899999999999999754 125678899999999999988999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003466 794 CSQLLLKLYQRLEEF 808 (818)
Q Consensus 794 Id~~~~~l~~~l~~l 808 (818)
||+++++|++++.++
T Consensus 412 i~~~~~~l~~~l~~~ 426 (429)
T PRK06173 412 LSQLTSGLLRVLKQE 426 (429)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999753
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=573.19 Aligned_cols=376 Identities=27% Similarity=0.427 Sum_probs=301.5
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
|.+.+.+++|+|+++.. ..|.++++++|. |+||.||| +||||.+|+|+.++||+ ||+|++|+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~----~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~ 72 (422)
T PRK05630 4 LREFDHRHIWHPYAAPG----VRNRLVTSTDGV--FLTLEDGS----TVIDAMSSWWSAAHGHG-HPRLKAAAHKQIDTM 72 (422)
T ss_pred hhhccccccccCcccCC----CCCeeEEeceee--EEEECCCC----EEEEcchhHHHhcCCCC-CHHHHHHHHHHHHhC
Confidence 33445667899886522 357788888886 79999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
.+..+....+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|
T Consensus 73 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~ 138 (422)
T PRK05630 73 SHVMFGGLTHEPAIKLTRKLLNLTDNG-LDHVFYSDSGSVSVEVAIKMA-LQYSKGQGH------------PERTRLLTW 138 (422)
T ss_pred CCcccCCcCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 876654567999999999999988754 689999999999999999999 777755444 668899999
Q ss_pred cCCCCCCccccccccCCC-CCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhccc
Q 003466 513 KGSYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~-~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~ 591 (818)
+++|||+|.+++++++.. .++.. | .+ .. ++..+++.|.... .++
T Consensus 139 ~~~yHG~t~~als~~~~~~~~~~~----~-~~---~~--------~~~~~~p~~~~~~--------~~~----------- 183 (422)
T PRK05630 139 RSGYHGDTFAAMSVCDPEGGMHSL----W-KG---TL--------PEQIFAPAPPVRG--------SSP----------- 183 (422)
T ss_pred CCCcCCccHHHhccCCCccccccc----c-cc---cC--------CCCeEcCCCcccC--------CCh-----------
Confidence 999999999999998743 22221 1 10 00 1122333332110 000
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc
Q 003466 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (818)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~ 671 (818)
.....|.+.+++.+. +++||||+||++|++||+++||++|+++|+++|++||++||+|||||||||||+
T Consensus 184 ---~~~~~~~~~~~~~~~--------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~ 252 (422)
T PRK05630 184 ---QEISEYLRSLELLID--------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE 252 (422)
T ss_pred ---HHHHHHHHHHHHHHh--------hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch
Confidence 112234566666663 489999999955999999999999999999999999999999999999999999
Q ss_pred cchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC--------hH-----------------HHH-------
Q 003466 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD--------SK-----------------LWD------- 719 (818)
Q Consensus 672 ~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~--------~~-----------------~~~------- 719 (818)
+|+++++||.|||+|+||+|||||+|+||+++++++++.+... .. +++
T Consensus 253 ~~a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~ 332 (422)
T PRK05630 253 LFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQ 332 (422)
T ss_pred hhHHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 9999999999999999999999999999999999999877421 10 111
Q ss_pred -----HHHH---HHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChH
Q 003466 720 -----LELI---QQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSP 791 (818)
Q Consensus 720 -----~~l~---~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~ 791 (818)
+.+. +.+.+++.|.+|||.|+|+++++..+ ..+..+.+.|+++||++.+.|++++|.||+++|+
T Consensus 333 ~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~--------~~~~~~~~~~~~~Gl~~~~~g~~l~~~PpL~it~ 404 (422)
T PRK05630 333 VKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQP--------VDMEEATQAAVDHGVWLRPFGRLVYVMPPYITTS 404 (422)
T ss_pred HHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCc--------ccHHHHHHHHHHCCeEEEecCCEEEEECCccCCH
Confidence 1122 23445778999999999999999754 1245788899999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003466 792 EVCSQLLLKLYQRLEE 807 (818)
Q Consensus 792 edId~~~~~l~~~l~~ 807 (818)
+|||+++++|++++++
T Consensus 405 ~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 405 EQIAQICAALAAAVKA 420 (422)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999864
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=572.81 Aligned_cols=376 Identities=28% Similarity=0.439 Sum_probs=302.1
Q ss_pred hhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccc
Q 003466 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (818)
Q Consensus 356 ~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~ 435 (818)
.+.+++|+|++++.. ..+|.++++++|. ++||.||| +|||+++|+|++++||+ ||+|++|+++|++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~ 78 (428)
T PRK07986 8 FDQRHIWHPYTSMTS--PLPVYPVVSAEGC--ELILADGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHV 78 (428)
T ss_pred ccccccccCCccccc--CCCCeeEEeeeee--EEEeCCCC----EEEEcchhHHhhcCCCC-CHHHHHHHHHHHhhcCCc
Confidence 345678999987643 2345788888886 79999999 99999999999999999 999999999999998876
Q ss_pred cCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCC
Q 003466 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (818)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~s 515 (818)
.+....+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+| .+|.+||+|+++
T Consensus 79 ~~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~~~~~g-------------~~r~kii~~~~~ 143 (428)
T PRK07986 79 MFGGITHPPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKG-------------EPRQRFLTLRHG 143 (428)
T ss_pred cccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcC-------------CCCcEEEEECCC
Confidence 654567999999999999998754 689999999999999999999 67754332 346799999999
Q ss_pred CCCCccccccccCCC-CCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCch
Q 003466 516 YHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (818)
Q Consensus 516 YHG~t~~als~tg~~-~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~ 594 (818)
|||.|.+++++++.. .++.. +.+ . .++..+++.|++.. . +
T Consensus 144 yHG~t~~a~s~~~~~~~~~~~-----~~~---~--------~~~~~~~~~p~~~~-----------~------------~ 184 (428)
T PRK07986 144 YHGDTFGAMSVCDPDNSMHSL-----YKG---Y--------LPENLFAPAPQSRF-----------D------------G 184 (428)
T ss_pred cCCCcHhhhcccCCchhhhhc-----cCC---C--------CCCCEEECCCCccc-----------c------------h
Confidence 999999999998743 22221 111 0 01223344443210 0 0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch
Q 003466 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (818)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a 674 (818)
.....+.+.+++.|+ ..+++++|||+||++|++||++++|++||++|+++|++||++||+|||||||||+|++|+
T Consensus 185 ~~~~~d~~~l~~~l~-----~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa 259 (428)
T PRK07986 185 EWDERDIAPFARLMA-----AHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFA 259 (428)
T ss_pred hhHHHHHHHHHHHHH-----hCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeee
Confidence 011112356777776 345789999999966999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh-----H-------------------HHH-----------
Q 003466 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-----K-------------------LWD----------- 719 (818)
Q Consensus 675 ~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~-----~-------------------~~~----------- 719 (818)
++++||+|||+|+||+|||||+|+||+++++++++.+.... + +++
T Consensus 260 ~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~ 339 (428)
T PRK07986 260 CEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAI 339 (428)
T ss_pred ecccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999875421 1 111
Q ss_pred -HHH---HHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHH
Q 003466 720 -LEL---IQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCS 795 (818)
Q Consensus 720 -~~l---~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId 795 (818)
+.+ ++.+.+++.+.+|||.|+|+++++..+. .+..+++.|+++||++.+.|++|+|.||+++|++||+
T Consensus 340 g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~--------~~~~~~~~l~~~Gl~~~~~g~~i~~~Ppl~it~~ei~ 411 (428)
T PRK07986 340 EAQLREELAPLRDAPMVADVRVLGAIGVVETTRPV--------NMAALQRFFVEQGVWIRPFGKLIYLMPPYIILPEQLQ 411 (428)
T ss_pred HHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcc--------cHHHHHHHHHHCCcEEEecCCEEEEeCCCCCCHHHHH
Confidence 112 2233457889999999999999997541 2557889999999999998899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003466 796 QLLLKLYQRLEE 807 (818)
Q Consensus 796 ~~~~~l~~~l~~ 807 (818)
+++++|++++++
T Consensus 412 ~~~~~l~~~l~~ 423 (428)
T PRK07986 412 RLTAAVNRAVQD 423 (428)
T ss_pred HHHHHHHHHHhh
Confidence 999999999853
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-64 Score=573.15 Aligned_cols=388 Identities=21% Similarity=0.309 Sum_probs=310.0
Q ss_pred cCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC
Q 003466 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (818)
Q Consensus 358 ~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~ 437 (818)
.+++|+||+++..+. ..|.++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~-~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~ 86 (445)
T PRK09221 15 LDAHWMPFTANRQFK-AAPRLLVSAEGM--YYTDADGR----KILDGTAGLWCCNAGHG-RPEIVEAVARQAATLDYAPA 86 (445)
T ss_pred hhhcccCcccccccC-CCCceEEecccc--EEEeCCCC----EEEEccccHhhccCCCC-CHHHHHHHHHHHHhccCccc
Confidence 456899998765442 357888898886 79999999 99999999999999999 99999999999999887665
Q ss_pred CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCC
Q 003466 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (818)
Q Consensus 438 ~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYH 517 (818)
..+.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|+++||
T Consensus 87 ~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~~~~~yH 152 (445)
T PRK09221 87 FQMGHPLAFELAERLAELAPGG-LDHVFFTNSGSESVDTALKIA-LAYHRARGQ------------GTRTRLIGRERGYH 152 (445)
T ss_pred cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcC
Confidence 5567999999999999998754 689999999999999999999 778765443 55789999999999
Q ss_pred CCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc-hhhhhccccccccccCccchhhcccCchhH
Q 003466 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (818)
Q Consensus 518 G~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~ 596 (818)
|+|.+++++++.+.++.. |.+ . .++..+++.|+ ++++ .+... ....
T Consensus 153 G~t~gals~~~~~~~~~~-----~~~---~--------~~~~~~~~~~~~~~~~---------------~~~~~--~~~~ 199 (445)
T PRK09221 153 GVGFGGISVGGIVNNRKM-----FGG---L--------LPGVDHLPHTLDLPEN---------------AFSKG--QPEH 199 (445)
T ss_pred ccchhhhccCCChhhhhc-----cCC---C--------CCCCeEeCCCcccccc---------------ccCCC--hHHH
Confidence 999999999986654432 111 0 01223444443 2211 01100 1122
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhc
Q 003466 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 597 ~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
...+.+.+++.++. .+.+++||||+||| |+++|+++||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 200 ~~~~~~~l~~~i~~----~~~~~iAavi~Epv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~ 274 (445)
T PRK09221 200 GAELADDLERLVAL----HDASTIAAVIVEPM-AGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAE 274 (445)
T ss_pred HHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHH
Confidence 33445678887863 23478999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEecccccCCccccceeecchHHHhhccCC---------hH-----------------HHH-----------
Q 003466 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD---------SK-----------------LWD----------- 719 (818)
Q Consensus 677 ~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~---------~~-----------------~~~----------- 719 (818)
++|++|||+|+||+|||||+|+|++++++++++.+... +. +++
T Consensus 275 ~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~ 354 (445)
T PRK09221 275 RFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAEL 354 (445)
T ss_pred hcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999876421 00 111
Q ss_pred -HHHHH---HHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHH
Q 003466 720 -LELIQ---QISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCS 795 (818)
Q Consensus 720 -~~l~~---~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId 795 (818)
+.+.+ .+..++.+.+|||.|+|+++++.... .. +...+..+.+.|+++||++.+.++++||+||+++|++|||
T Consensus 355 g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~--~~-~~~~~~~~~~~~~~~Gv~~~~~~~~lr~~Ppl~~t~~eid 431 (445)
T PRK09221 355 APYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRP--GA-PGARGYEAFMKCFEKGLLVRYTGDTIALSPPLIIEKAQID 431 (445)
T ss_pred HHHHHHHHHhhccCCCEEEEecCceEEEEEEeccc--cc-ccchHHHHHHHHHHCCeEEeecCCEEEEECCccCCHHHHH
Confidence 11222 23456788999999999999997531 11 1134567889999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 003466 796 QLLLKLYQRLEEF 808 (818)
Q Consensus 796 ~~~~~l~~~l~~l 808 (818)
+++++|++++.++
T Consensus 432 ~~~~~l~~~l~~~ 444 (445)
T PRK09221 432 ELVDALGDALRAV 444 (445)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999764
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-64 Score=572.20 Aligned_cols=373 Identities=23% Similarity=0.260 Sum_probs=297.2
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccC
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~ 457 (818)
++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.+.....+.+++..+|+|+|++.+|
T Consensus 16 ~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p 88 (447)
T PRK06917 16 VISHGKGV--YLYDQNGN----KYFDGSSGAVTAGIGHG-VKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSP 88 (447)
T ss_pred eEEeeeee--EEEeCCCC----EEEECchhHHhccCCCC-CHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCC
Confidence 57888776 79999999 99999999999999999 9999999999999986654434678999999999999987
Q ss_pred CCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCC
Q 003466 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (818)
Q Consensus 458 ~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~ 537 (818)
.+ +++++|++|||||||+|||+| |+|+..+|. ++|.+||+|+++|||+|.+++++++...++..|
T Consensus 89 ~~-~~~v~f~~sGsEAve~AlklA-r~~~~~rg~------------t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~- 153 (447)
T PRK06917 89 GD-LNWSFFVNSGSEANETAMKIA-IQHFQERGI------------QGKHKILSRWMSYHGITMGALSMSGHPLRRQRF- 153 (447)
T ss_pred CC-CCEEEEeCChHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCccHHHHHhcCCccccccC-
Confidence 54 579999999999999999999 667655554 678899999999999999999998865444321
Q ss_pred CCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003466 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (818)
Q Consensus 538 ~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~ 617 (818)
.| .+ ++..+++.|.+++++ +++ +...+...+.+.+++.++. .++
T Consensus 154 ~~-------~~--------~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~le~~i~~----~~~ 197 (447)
T PRK06917 154 VS-------LL--------EDYPTISAPYCYRCP--------VQK---------VYPTCQLACATELETAIER----IGA 197 (447)
T ss_pred CC-------CC--------CCCeEeCCCcccccc--------cCC---------ChHHHHHHHHHHHHHHHHh----cCC
Confidence 01 00 112233444433211 111 1122334455778888863 234
Q ss_pred CcEEEEEEcccccc-CCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCcc
Q 003466 618 GCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696 (818)
Q Consensus 618 ~~iAAVIvEPV~~g-~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~ 696 (818)
+++||||+||| |+ .||+++||++||++|+++|++||++||+|||+|||||||++|+++++||+|||+|+||+|||||+
T Consensus 198 ~~iAAvi~EPi-~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~ 276 (447)
T PRK06917 198 EHIAAFIAEPI-IGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYT 276 (447)
T ss_pred CceEEEEEecc-ccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCc
Confidence 68999999998 87 57899999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccceeecchHHHhhccCCh-------H--------------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 697 PLAATLATNAVFDSFVGDS-------K--------------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~-------~--------------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
|+||+++++++++.+.... . .+.+.+.+..++++.+.+|||
T Consensus 277 Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG 356 (447)
T PRK06917 277 PIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRG 356 (447)
T ss_pred ceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEee
Confidence 9999999999998764311 0 111223333346888999999
Q ss_pred eeeEEEEEEecCcccC-CC--chHHHHHHHHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNA-GY--GSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~-~~--~~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.|+|++++|+.+.... .. +...+..+.+.|+++||++.+. ++++++.||+++|++|||+++++|+++++
T Consensus 357 ~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~ 436 (447)
T PRK06917 357 KGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVE 436 (447)
T ss_pred cceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999997653211 11 2245778899999999999874 57999999999999999999999999998
Q ss_pred HHH
Q 003466 807 EFD 809 (818)
Q Consensus 807 ~l~ 809 (818)
++.
T Consensus 437 ~~~ 439 (447)
T PRK06917 437 EMM 439 (447)
T ss_pred HHH
Confidence 873
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-64 Score=571.42 Aligned_cols=388 Identities=22% Similarity=0.310 Sum_probs=308.7
Q ss_pred cCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC
Q 003466 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (818)
Q Consensus 358 ~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~ 437 (818)
....|+|+++...+. ..|.++++++|. |+||.||| +||||.+|+|+.++||+ ||+|++|+++|++++.+...
T Consensus 12 ~~~~~~~~~~~~~~~-~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~ 83 (442)
T PRK13360 12 LSAFWMPFTANRQFK-KAPRLLVAAKGM--YYTTHDGR----RVLDGTAGLWCVNAGHG-RPEIVEAVRAQAGELDYAPA 83 (442)
T ss_pred ccccccCcccccccc-CCCceEEeeeee--EEEeCCCC----EEEECchhHHHhccCCC-CHHHHHHHHHHHHhCCCccc
Confidence 345788887754432 357788898886 79999999 99999999999999999 99999999999999877655
Q ss_pred CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCC
Q 003466 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (818)
Q Consensus 438 ~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYH 517 (818)
.+..+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|+++||
T Consensus 84 ~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~~~yH 149 (442)
T PRK13360 84 FQMGHPKAFELANRIAEIAPGG-LNHVFFTNSGSESVDTALKIA-LAYHRARGE------------GSRTRLIGRERGYH 149 (442)
T ss_pred CCcCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEcCCcC
Confidence 4567999999999999998744 689999999999999999999 777655443 45789999999999
Q ss_pred CCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcch-hhhhccccccccccCccchhhcccCchhH
Q 003466 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (818)
Q Consensus 518 G~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~-~~~~~~~~~~~~~nd~~~~~~~~~~~~~~ 596 (818)
|+|.+++++++...++..| +... ++..+++.|+. +++ .|.. .....
T Consensus 150 G~t~gals~tg~~~~~~~~--------~~~~--------~~~~~~p~~~~~~~~---------------~~~~--~~~~~ 196 (442)
T PRK13360 150 GVGFGGISVGGIVPNRKAF--------GALL--------PGVDHLPHTLDLARN---------------AFSK--GQPEH 196 (442)
T ss_pred CccHhhhhccCChhhhhcc--------CCCC--------CCCEEeCCCchhhcc---------------ccCC--ChHHH
Confidence 9999999999876554431 1110 11233443321 110 0110 01123
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhc
Q 003466 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 597 ~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
...+.+.+++.++. .+++++||||+||| |+++|+++||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 197 ~~~~~~~le~~l~~----~~~~~~aavivEpi-~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~ 271 (442)
T PRK13360 197 GAELADELERLVTL----HDASTIAAVIVEPV-AGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQ 271 (442)
T ss_pred HHHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhh
Confidence 33456778888863 34578999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEecccccCCccccceeecchHHHhhccCCh-------H-------------------HHH-----------
Q 003466 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-------K-------------------LWD----------- 719 (818)
Q Consensus 677 ~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~-------~-------------------~~~----------- 719 (818)
++||+|||+|+||+|||||+|+||+++++++++.+.... + +++
T Consensus 272 ~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~ 351 (442)
T PRK13360 272 YFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARL 351 (442)
T ss_pred hcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999998764310 0 111
Q ss_pred -HHHH---HHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHH
Q 003466 720 -LELI---QQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCS 795 (818)
Q Consensus 720 -~~l~---~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId 795 (818)
+.+. +.+.+++.+.+|||.|+++++++.... .. +...+..+++.|+++||++.+.++++||+||+++|++|||
T Consensus 352 g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~--~~-~~~~~~~~~~~l~~~Gvl~~~~~~~lr~~Ppl~~t~~eid 428 (442)
T PRK13360 352 APYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRD--GK-PGKRAYEVFLKCFEKGLMIRYTGDILALSPPLIIEEAQID 428 (442)
T ss_pred HHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCC--CC-cchhHHHHHHHHHHCCcEEEecCCEEEEeCCCccCHHHHH
Confidence 1122 233457788999999999999997532 11 1234667888999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 003466 796 QLLLKLYQRLEEF 808 (818)
Q Consensus 796 ~~~~~l~~~l~~l 808 (818)
+++++|+++++++
T Consensus 429 ~~~~~l~~~l~~~ 441 (442)
T PRK13360 429 ELFDILAQALKET 441 (442)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999764
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-63 Score=566.10 Aligned_cols=370 Identities=18% Similarity=0.166 Sum_probs=289.8
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++..+.....+.++...+|+++|++
T Consensus 45 ~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 117 (464)
T PRK06938 45 IPLALKRARGI--YVEDVEGR----QFIDCLAGAGTLALGHN-HPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFA 117 (464)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEccCCccccccCCC-CHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHH
Confidence 36688888886 79999999 99999999999999999 9999999999998633222224678999999999999
Q ss_pred ccCCCCC--CcEEEe-CChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 455 GVGKGWA--SRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 455 ~~~~~~l--~~v~f~-~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
.+|.+.. ++++|+ ||||||||+|||+| |.|++| .+||+++++|||+|.+++++++...
T Consensus 118 ~~p~~~~~~~~v~f~~~SGSEAve~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~als~t~~~~ 178 (464)
T PRK06938 118 SLPEAFAREAKIQFCGPTGTDAVEAALKLV-KTATGR------------------STVLSFQGGYHGMSQGALSLMGNLG 178 (464)
T ss_pred hCcccccccceEEEeCCCcHHHHHHHHHHH-HHhhCC------------------CeEEEECCccCCccHHHHhhcCCcc
Confidence 8874311 378776 79999999999999 777654 5899999999999999999998654
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
++.. +. .. .++..+++.|+.++++ |+. ..+.....+.+.+++.+++.
T Consensus 179 ~~~~-----~~---~~--------~~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~l~~~i~~~ 225 (464)
T PRK06938 179 PKKP-----LG---AL--------LPGVQFLPYPYDYRCP--------FGL---------GGEAGVRANLHYLENLLDDP 225 (464)
T ss_pred cccc-----CC---CC--------CCCcEEeCCCcccccc--------ccC---------chhhHHHHHHHHHHHHHHhh
Confidence 4332 11 00 1123456666544321 110 11222334567788888631
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccc
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgL 691 (818)
. .+++++||||+||| |++||+++||++||++|+++|++||++||+|||+|||||||++|+++++||+|||+|+||+|
T Consensus 226 ~--~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKgl 302 (464)
T PRK06938 226 E--SGVVLPAAVILEVV-QGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAI 302 (464)
T ss_pred c--cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccc
Confidence 0 12358999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEE
Q 003466 692 TGGVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVV 736 (818)
Q Consensus 692 ggGy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vr 736 (818)
||| +|+||+++++++ +.+..... ++.+.+.+..++++.+.+||
T Consensus 303 ggG-~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~Vr 380 (464)
T PRK06938 303 GGS-LPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVR 380 (464)
T ss_pred cCC-CceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeee
Confidence 999 799999999886 65532111 11222333335689999999
Q ss_pred eeeeEEEEEEecCcccC------CCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 737 ALGTLCAIELQAAGCNA------GYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 737 g~Gl~~~iel~~~~~~~------~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
|.|+|++++|+.+.... ..+...+..+.+.|+++||++.+. +++|||.||++||++|||++++++++++.+
T Consensus 381 G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 381 GRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred ccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 99999999997542211 112345677889999999999874 489999999999999999999999999976
Q ss_pred H
Q 003466 808 F 808 (818)
Q Consensus 808 l 808 (818)
+
T Consensus 461 ~ 461 (464)
T PRK06938 461 A 461 (464)
T ss_pred H
Confidence 4
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-63 Score=564.56 Aligned_cols=352 Identities=22% Similarity=0.252 Sum_probs=290.2
Q ss_pred CeEEEEeecC-CeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 375 AVTVIDSRCG-ENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 375 ~~~vi~~~~G-~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
.|.++.+++| . |+||.||| +||||.+|+|+.++||+ ||+|++|+++|++++.+.+. ...+++..+||++|+
T Consensus 63 ~~~~~~~~~G~~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~l~~~~~-~~~~~~~~~lae~L~ 134 (459)
T PRK11522 63 YGAVEWQAGGLN--TLVDTQGQ----EFIDCLGGFGIFNVGHR-NPVVVSAVQNQLAKQPLHSQ-ELLDPLRAMLAKTLA 134 (459)
T ss_pred CCeeEEeccCeE--EEEECCCC----EEEECCcCHHhhhcCCC-CHHHHHHHHHHHhhCccccc-ccCCHHHHHHHHHHH
Confidence 4568888888 6 79999999 99999999999999999 99999999999999876542 456899999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+.+|.+ +++|+|+||||||||+|||+| |.||+++ +|.+||+++++|||+|.+++++++...++
T Consensus 135 ~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~t~~~---------------gr~~ii~~~~~yHG~t~~~ls~~~~~~~~ 197 (459)
T PRK11522 135 ALTPGK-LKYSFFCNSGTESVEAALKLA-KAYQSPR---------------GKFTFIATSGAFHGKSLGALSATAKSTFR 197 (459)
T ss_pred HhCCCC-CCEEEEeCCchHHHHHHHHHH-HHHhccC---------------CCcEEEEecCCCCCCcHHHhhhcCCcccc
Confidence 988754 589999999999999999999 8888653 25789999999999999999999866554
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.+| ++. .| ++.++ +|||. +.+++.|+...
T Consensus 198 ~~~--------~~~--~~------~~~~~----------------~~~d~------------------~~l~~~l~~~~- 226 (459)
T PRK11522 198 KPF--------MPL--LP------GFRHV----------------PFGNI------------------EAMRTALSECK- 226 (459)
T ss_pred cCC--------CCC--CC------CCccc----------------CCCCH------------------HHHHHHHHHhh-
Confidence 321 111 01 11121 25542 33445554210
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+++++||||+||| |+++|+++||++||++|+++|++||++||+|||||||||||++|+++++||+|||+|+||+|||
T Consensus 227 -~~~~~iAavIvEpv-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lgg 304 (459)
T PRK11522 227 -KTGDDVAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGG 304 (459)
T ss_pred -ccCCcEEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEechhhhC
Confidence 24578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh--H-----------------------------------HHHHHHHHHHHcCC-CeeEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS--K-----------------------------------LWDLELIQQISSHR-TVQRV 735 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~--~-----------------------------------~~~~~l~~~l~~~~-~v~~v 735 (818)
||+|+||+++++++++.+.... . ++.+.+.+...+++ .+.+|
T Consensus 305 G~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~V 384 (459)
T PRK11522 305 GVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEA 384 (459)
T ss_pred CCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceeeE
Confidence 9999999999999988763211 0 11122222234677 68999
Q ss_pred EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhH
Q 003466 736 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 812 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~ 812 (818)
||.|+|+++++..+ ..+..+++.|+++||++.+. ++++||.||+++|++|||+++++|+++++++.+..
T Consensus 385 rG~Gl~~giel~~~--------~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~~~ 456 (459)
T PRK11522 385 RGKGMLMAIEFVDN--------EIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRVSV 456 (459)
T ss_pred EeceeEEEEEecCc--------hHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999865 34677899999999999864 48999999999999999999999999998877543
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=563.55 Aligned_cols=376 Identities=22% Similarity=0.283 Sum_probs=300.6
Q ss_pred CccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCC
Q 003466 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (818)
Q Consensus 359 ~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~ 438 (818)
+++|+|++.. ..|+++++++|. ++||.||| +||||++ .|+.++||+ ||+|++|+++|++++.+.. .
T Consensus 43 ~~~~~~~~~~-----~~~~~i~~a~G~--~l~D~dG~----~ylD~~g-~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~-~ 108 (459)
T PRK06082 43 EVFLHQAMST-----PCLDVLASAEGI--YIEDVDGK----KYMDFHG-NNVHQLGYG-HPHVIEKVKEQMAKLPFSP-R 108 (459)
T ss_pred HHhcccccCC-----CCCceEEeeeee--EEEECCCC----EEEEccc-HhhcccCCC-CHHHHHHHHHHHHhCCCcc-C
Confidence 4467776432 236788898886 79999999 9999985 599999999 9999999999999987654 2
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++++.+||++|++++|.+ +++|+|++|||||||+|+|+| |.|+++ .+||+|+++|||
T Consensus 109 ~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~tgr------------------~~ii~~~~~yHG 168 (459)
T PRK06082 109 RFTNETAIECAEKLTEIAGGE-LNRVLFAPGGTSAIGMALKLA-RHITGN------------------FKVVSLWDSFHG 168 (459)
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEECCCcHHHHHHHHHHH-HHhcCC------------------CEEEEEeCCCcC
Confidence 467899999999999998743 579999999999999999999 777654 589999999999
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
+|.+++++++.+.++..| ++. .+++.+++.|+.++++ |++. +.+..
T Consensus 169 ~t~~a~s~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~--------~~~~----------~~~~~ 214 (459)
T PRK06082 169 ASLDAISVGGEACFRQGM--------GPL--------MAGVERIPPAVSYRGA--------FPDA----------DGSDV 214 (459)
T ss_pred ccHHHHhhcCCcccccCC--------CCC--------CCCCEEeCCCcccccc--------cCCh----------hHHHH
Confidence 999999999876554421 110 1234455555544321 2221 23344
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+.+++.+++ .+++||||+||| |++| +++||++||++|+++|++||++||+|||||||||||++|+++++
T Consensus 215 ~~~~~l~~~i~~------~~~vAavIvEPv-~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~ 286 (459)
T PRK06082 215 HYADYLEYVIEK------EGGIGAFIAEAV-RNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286 (459)
T ss_pred HHHHHHHHHHhc------CCCEEEEEECCc-cCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhh
Confidence 556778888862 358999999998 9985 77889999999999999999999999999999999999999999
Q ss_pred CCCCcEEEecccccCCccccceeecchHHHhhccCC----hH-------------------------------HHHHHHH
Q 003466 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD----SK-------------------------------LWDLELI 723 (818)
Q Consensus 679 gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~----~~-------------------------------~~~~~l~ 723 (818)
||+|||+|+||+|||||+|+|++++++++++.+... .. ++.+.+.
T Consensus 287 gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~ 366 (459)
T PRK06082 287 GIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLL 366 (459)
T ss_pred CCCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988999999999988654210 00 1222333
Q ss_pred HHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 724 QQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 724 ~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
+..++++.+.+|||.|+|+++++..+.....++...+..+...|+++||++.+. ++++++.||+++|++|||+++++++
T Consensus 367 ~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~~l~ 446 (459)
T PRK06082 367 EMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILE 446 (459)
T ss_pred HHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHHHHH
Confidence 334568899999999999999998653222233345677889999999999885 6999999999999999999999999
Q ss_pred HHHHHHHH
Q 003466 803 QRLEEFDK 810 (818)
Q Consensus 803 ~~l~~l~~ 810 (818)
+++.++.+
T Consensus 447 ~~l~~~~~ 454 (459)
T PRK06082 447 EAIAKICQ 454 (459)
T ss_pred HHHHHHhh
Confidence 99988744
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=561.25 Aligned_cols=372 Identities=19% Similarity=0.237 Sum_probs=296.4
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|+++++++|. ||||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.+.......+++..+|+++|++.
T Consensus 36 p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~ 108 (457)
T PRK05639 36 PLVPKRGFGA--LIEDVDGN----VFIDFLAGAAAASTGYS-HPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEI 108 (457)
T ss_pred CceEEeeecC--EEEeCCCC----EEEECCcCHHhhccCCC-CHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhh
Confidence 6788898886 79999999 99999999999999999 99999999999999876544334578999999999998
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCCC
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~~ 534 (818)
+|.+ +++|+|++|||||||+|||+| |+||++ .+||+|+++|||+|.+++++++.. .++.
T Consensus 109 ~p~~-~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~a~s~~~~~~~~~~ 168 (457)
T PRK05639 109 SPIE-NPKVLFGLSGSDAVDMAIKVS-KFSTRR------------------PWILAFIGAYHGQTLGATSVAAFQSSQKR 168 (457)
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHHHcCCCccccc
Confidence 8754 579999999999999999999 777654 589999999999999999998742 2222
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. | .+. .++..++++|++++++. ..++. .+.+.+...+.+.+++.|... .
T Consensus 169 ~-----~---~~~--------~~~~~~~p~~~~~~~~~------~~~~~-------~~~~~~~~~~~~~le~~l~~~--~ 217 (457)
T PRK05639 169 G-----F---SPL--------MPNVVWIPYPNPYRNPW------GINGY-------EEPDELINRFLDYLENYVFSH--V 217 (457)
T ss_pred C-----C---CCC--------CCCceEeCCCccccccc------ccccc-------CCHHHHHHHHHHHHHHHHHHh--h
Confidence 1 0 110 12344566665543211 01110 112234445567777776421 0
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.+++++||||+||| |++||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+||||+||||
T Consensus 218 ~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG 296 (457)
T PRK05639 218 VPPDEVAALFAEPI-QGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG 296 (457)
T ss_pred cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCC
Confidence 24679999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCCh-------H---------------------------HHHHHHHHHHHcCCCeeEEEeeee
Q 003466 695 VIPLAATLATNAVFDSFVGDS-------K---------------------------LWDLELIQQISSHRTVQRVVALGT 740 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~-------~---------------------------~~~~~l~~~l~~~~~v~~vrg~Gl 740 (818)
+|+|++++++++++.+.... . ++.+.+.+...+++.+.+|||.|+
T Consensus 297 -~pi~av~~~~~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl 375 (457)
T PRK05639 297 -MGLSGVIGRKELMDLTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGL 375 (457)
T ss_pred -CcceeEEehHHHHhhcCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeecccee
Confidence 69999999999998432110 0 122223333356888999999999
Q ss_pred EEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 741 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 741 ~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
|+++++..+. ..++...+..+++.|+++|+++.+. +++|||.||+++|++|||+++++|+++++++.
T Consensus 376 ~~gve~~~~~--~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 376 MIGVEIVKEN--GKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred EEEEEEecCC--CCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 9999997542 1234456778999999999999875 48999999999999999999999999998875
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=558.56 Aligned_cols=343 Identities=21% Similarity=0.251 Sum_probs=278.4
Q ss_pred EEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhcc
Q 003466 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV 456 (818)
Q Consensus 377 ~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~ 456 (818)
.++.++.| +|+||.||| +||||.+|+|+.++||+ ||+|++|+++|++++.+.+. ...+++..+|||+|++.+
T Consensus 59 ~~~~~~~g--~~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~Av~~ql~~l~~~~~-~~~~~~~~~lAe~L~~~~ 130 (442)
T TIGR03372 59 VEWQAGGL--NTLIDTQGN----EFIDCLGGFGIFNVGHR-NPNVIAAVENQLAKQPLHSQ-ELLDPLRALLAKTLAALT 130 (442)
T ss_pred eEEEeCCe--eEEEECCCC----EEEECCccHHhhhcCCC-CHHHHHHHHHHHHhCCCccc-ccCCHHHHHHHHHHHHhC
Confidence 34455444 489999999 99999999999999999 99999999999999876542 356899999999999988
Q ss_pred CCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcC
Q 003466 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFL 536 (818)
Q Consensus 457 ~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~ 536 (818)
|.+ +++|+|+||||||||+|||+| |.|+..+ +|.+||+++++|||+|.+++++|+.+.++..|
T Consensus 131 p~~-~~~v~f~~SGsEA~e~AlklA-r~~t~~~---------------gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~ 193 (442)
T TIGR03372 131 PGK-LKYSFFCNSGTESVEAALKLA-KAYQSPR---------------GKFTFIAASGAFHGKSLGALSATAKPAFRKPF 193 (442)
T ss_pred CCC-cCEEEEeCCchHHHHHHHHHH-HHHHhhc---------------CCcEEEEECCCccCCCHHHhhccCCcccCCCC
Confidence 754 579999999999999999999 7887432 35789999999999999999999865444321
Q ss_pred CCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCC
Q 003466 537 QQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKV 616 (818)
Q Consensus 537 ~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~ 616 (818)
++. . +++.+++ |||. +.+++.++... .+
T Consensus 194 --------~p~--~------~~~~~~p----------------~~d~------------------~~~~~~l~~~~--~~ 221 (442)
T TIGR03372 194 --------MPL--L------PGFHHVA----------------FGDI------------------EAMLKALNECK--KT 221 (442)
T ss_pred --------CCC--C------CCCEEeC----------------CCCH------------------HHHHHHHHHHh--cC
Confidence 110 0 1222333 4442 22233332110 24
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCcc
Q 003466 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696 (818)
Q Consensus 617 ~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~ 696 (818)
++++||||+||| |++||+++||++||++++++|++||++||+|||||||||||+||+++++||+|||+|+||+|||||+
T Consensus 222 ~~~vAavIvEpv-~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~ 300 (442)
T TIGR03372 222 GDDVAAIILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVM 300 (442)
T ss_pred CCcEEEEEEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcc
Confidence 678999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecchHHHhhccCCh--H-------------------H----------------HHHHHHHHHHcCC-CeeEEEee
Q 003466 697 PLAATLATNAVFDSFVGDS--K-------------------L----------------WDLELIQQISSHR-TVQRVVAL 738 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~--~-------------------~----------------~~~~l~~~l~~~~-~v~~vrg~ 738 (818)
|+||+++++++++.+.... . + +.+.+.+...+++ .+.+|||.
T Consensus 301 Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~ 380 (442)
T TIGR03372 301 PIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGK 380 (442)
T ss_pred cceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc
Confidence 9999999999998773211 0 1 1122233334677 68999999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
|+|+++++.++ ..+..+++.|+++||++.+. ++++||.||+++|++|||+++++|++++
T Consensus 381 Gl~~giel~~~--------~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 381 GLLMAIEFRDN--------EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred eEEEEEEeCCh--------HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 99999999865 34677899999999999764 4899999999999999999999998864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-62 Score=555.36 Aligned_cols=372 Identities=19% Similarity=0.228 Sum_probs=300.4
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.+.....+.+++..+|+++|++
T Consensus 24 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 96 (445)
T PRK08593 24 YPLVIDHGYGA--TLTDVDGK----TYIDLLASASSQNVGHA-PPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCE 96 (445)
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEECCccHHhhcCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 36788888886 79999999 99999999999999999 9999999999999988766545679999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC-CC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~-~~ 533 (818)
.+|.++.++|+|++|||||||+|||+| |.|++| .+||+++++|||+|.+++++++... ++
T Consensus 97 ~~p~~~~~~v~f~~SGseA~e~AiklA-r~~tgr------------------~~ii~~~~~YHG~t~~als~s~~~~~~~ 157 (445)
T PRK08593 97 LAPGDFEKRVTFGLSGSDANDGIIKFA-RAYTGR------------------PYIISFTNAYHGSTYGSLSMSGISLNMR 157 (445)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCCCcHHHHhhcCCCcccc
Confidence 987543469999999999999999999 778654 5899999999999999999997432 22
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .++. .++..+++.|+.+++... .++ ......+.+.+++.++..
T Consensus 158 ~~--------~~~~--------~~~~~~~~~p~~~~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~-- 202 (445)
T PRK08593 158 RK--------YGPL--------LPGFVHIPFPDKYRGMYE------EPD-----------ANFVEEYLAPLKEMFEKY-- 202 (445)
T ss_pred cC--------CCCC--------CCCcEEeCCCcccccccc------CCc-----------HHHHHHHHHHHHHHHHhh--
Confidence 21 0111 123455666765542110 011 122344456677767532
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
..++++||||+||| |++||+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+|||
T Consensus 203 -~~~~~iAavI~EPv-~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~ 280 (445)
T PRK08593 203 -LPADEVACIVIETI-QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAG 280 (445)
T ss_pred -cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccC
Confidence 13578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~ 738 (818)
| +|+|++++++++++.+..... ++.+.+.+..++++.+.+|||.
T Consensus 281 G-~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~ 359 (445)
T PRK08593 281 G-MPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGY 359 (445)
T ss_pred C-cccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 9 799999999999988742211 1112222333568899999999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
|+|+++++..+.....++...+..+++.|+++||++.+. ++++||.||++||++|||+++++++++++++.+
T Consensus 360 Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 360 GLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred ceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 999999997643222334456778999999999999874 599999999999999999999999999988753
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=555.31 Aligned_cols=371 Identities=19% Similarity=0.185 Sum_probs=287.7
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|+++..+.....+.+++..+||++|++
T Consensus 40 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~ 112 (459)
T PRK06931 40 LPLAIAKAQGV--WVTDVEGN----QYLDCLAGAGTLALGHN-HPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLS 112 (459)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEcccchhhccCCCC-CHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHH
Confidence 46788888886 79999999 99999999999999999 9999999999998743222224578999999999999
Q ss_pred ccCCCCC--CcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCC
Q 003466 455 GVGKGWA--SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (818)
Q Consensus 455 ~~~~~~l--~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~ 532 (818)
.+|.... ..+||+||||||||+|||+| |+|++| .+||+|+++|||+|.+++++++...+
T Consensus 113 ~~p~~~~~~~~~f~~~SGsEAve~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~als~t~~~~~ 173 (459)
T PRK06931 113 LLPGQGKEYCLQFTGPSGADAVEAAIKLA-KTYTGR------------------SNVISFSGGYHGMTHGALAVTGNLSP 173 (459)
T ss_pred hCCCccccceEEEeCCCcHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHhhcCCccc
Confidence 8864311 24566699999999999999 788654 58999999999999999999986544
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
+..+ .+. .++..+++.|+.++++ |+. .. +.....+.+.+++.+.+.
T Consensus 174 ~~~~--------~~~--------~~~~~~~~~~~~~~~~--------~~~-------~~--~~~~~~~~~~~~~~~~~~- 219 (459)
T PRK06931 174 KNAV--------NGL--------MPGVQFMPYPHEYRCP--------LGI-------GG--EAGVKALTYYFENFIEDV- 219 (459)
T ss_pred ccCC--------CCC--------CCCcEEeCCCcccccc--------ccC-------Cc--hhHHHHHHHHHHHHHHhh-
Confidence 4321 000 1234556667665432 221 00 111122233445554321
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg 692 (818)
..+++++||||+||| |++||+++||++||++||++|++||++||+|||||||||||++|+++++||+|||+|+||+||
T Consensus 220 -~~~~~~iAAvI~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~ 297 (459)
T PRK06931 220 -ESGVRKPAAVILEAI-QGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVG 297 (459)
T ss_pred -hcCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEeccccc
Confidence 024578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 693 GGVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
|| +|+||+++++++ +.+..... ++.+.+.+..+++|.+.+|||
T Consensus 298 gG-~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG 375 (459)
T PRK06931 298 GG-LPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRG 375 (459)
T ss_pred CC-cceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEec
Confidence 99 799999998874 65532111 122233333367899999999
Q ss_pred eeeEEEEEEecCcccC------CCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNA------GYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~------~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.|+|+++++..+.... ..+...+..+.+.|+++||++.+. +++++|.||+++|++|||+++++|+++++++
T Consensus 376 ~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 455 (459)
T PRK06931 376 RGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAA 455 (459)
T ss_pred CceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999997642111 112345677899999999999874 4899999999999999999999999999775
Q ss_pred H
Q 003466 809 D 809 (818)
Q Consensus 809 ~ 809 (818)
-
T Consensus 456 ~ 456 (459)
T PRK06931 456 V 456 (459)
T ss_pred H
Confidence 3
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=553.21 Aligned_cols=367 Identities=24% Similarity=0.267 Sum_probs=289.4
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.+..+..+.+++..+|+++|++
T Consensus 38 ~p~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~ 110 (443)
T PRK06058 38 LPVYVARAGGG--IVEDVDGN----RLIDLGSGIAVTSVGNS-APRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNR 110 (443)
T ss_pred CCceEEeeeee--EEEeCCCC----EEEEcCcchhhhccCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 36688888886 79999999 99999999999999999 9999999999999987655444568999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC-CC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~-~~ 533 (818)
.+|....++++|++|||||||+|||+| |.|+++ .+||+++++|||+|.+++++++... ++
T Consensus 111 ~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~al~~~~~~~~~~ 171 (443)
T PRK06058 111 LTPGDHEKRSALFNSGAEAVENAVKIA-RSYTGR------------------QAVVVFDHAYHGRTNLTMALTAKSMPYK 171 (443)
T ss_pred hCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCcChHHHHhhcCCCcccc
Confidence 887433469999999999999999999 788654 4899999999999999999987431 22
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .++. + ++..+++.|++++ +.. ....+.+.....+.+.+++.+
T Consensus 172 ~~--------~~~~--~------~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~l~~~~----- 215 (443)
T PRK06058 172 SG--------FGPF--A------PEVYRAPMSYPYR------------DPK---GLATDGEEAAARAITVIEKQV----- 215 (443)
T ss_pred cc--------cCCC--C------CCceEcCCCcccc------------ccc---ccccchHHHHHHHHHHHHHhh-----
Confidence 21 1111 0 1223344444332 110 000011122222333444433
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.++++||||+||+ |++||+++||++||++|+++|++||++||+|||+|||||||++|+++++|++|||+|+||+|||
T Consensus 216 --~~~~iAavi~EPi-~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~ 292 (443)
T PRK06058 216 --GADNLAAVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAG 292 (443)
T ss_pred --CCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccC
Confidence 2578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~ 738 (818)
| +|+||+++++++++.+..... ++.+.+.+...+++.+.+|||.
T Consensus 293 G-~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~ 371 (443)
T PRK06058 293 G-LPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGR 371 (443)
T ss_pred C-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeecc
Confidence 9 699999999999987753321 1222333333557889999999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|+|+++++..+. ...++...+..+.+.|+++||++.+. +++|||.||+++|++|||+++++|+++++++
T Consensus 372 G~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~ 443 (443)
T PRK06058 372 GAMIAIELVKPG-TTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALADL 443 (443)
T ss_pred ceEEEEEEecCC-CCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence 999999997653 12234456778999999999999874 4899999999999999999999999998653
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=548.69 Aligned_cols=380 Identities=31% Similarity=0.467 Sum_probs=307.7
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
+.++..+++|+|++++... ..|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~ 74 (423)
T PRK05964 4 LMALDLSHVWHPYTQMKLH--PPPIPIVRAEGA--YLYLADGR----ELIDAISSWWVATHGHN-HPYIDQAIREQLDRL 74 (423)
T ss_pred hhhhhhcceecCCCCcccc--CCCeeEEecccc--EEEeCCCC----EEEEcchhHHhccCCCC-CHHHHHHHHHHHhhC
Confidence 4455567899998876432 357888898886 79999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
.+..+.++.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|+..+|. ++|.+||+|
T Consensus 75 ~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~A~kla-r~~~~~~~~------------~~r~~ii~~ 140 (423)
T PRK05964 75 DHVIFAGFTHEPAERLAQRLVALTPGG-LDHVFFSDSGSVAVEVALKMA-LQYWRNRGE------------PGRSRFLSL 140 (423)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 776544567899999999999998744 689999999999999999999 777654443 568899999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+++|||+|.+++++++...++.. +.+ . ..+..++++| +||
T Consensus 141 ~~~yHG~t~~~ls~~~~~~~~~~-----~~~---~--------~~~~~~~~~~--------------~~d---------- 180 (423)
T PRK05964 141 RGGYHGDTIGTMSVGDRGGMHAL-----YTP---L--------LFEQVTAPFP--------------PDG---------- 180 (423)
T ss_pred cCCcCCccHHHHhcCCCcccccc-----ccC---c--------CCCCEEeCCC--------------cch----------
Confidence 99999999999999876543321 110 0 0112333333 222
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
....+.+.+++.+. .+++++||||+||++|++||++++|++||++|+++|++||++||+|||||||||+|++
T Consensus 181 ---~~~~~~~~l~~~l~-----~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~ 252 (423)
T PRK05964 181 ---YEQATLDALEALLE-----KHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTL 252 (423)
T ss_pred ---hHHHHHHHHHHHHH-----hCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 11233577788886 3467999999999559999999999999999999999999999999999999999999
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC---------h----H------------HHH--------
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD---------S----K------------LWD-------- 719 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~---------~----~------------~~~-------- 719 (818)
|+++++|+.|||+|+||+|+|||+|+|++++++++++.+... . . +++
T Consensus 253 ~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~ 332 (423)
T PRK05964 253 FACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERV 332 (423)
T ss_pred hHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999999999999876421 0 0 111
Q ss_pred ----HHHHHHH---HcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHH
Q 003466 720 ----LELIQQI---SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPE 792 (818)
Q Consensus 720 ----~~l~~~l---~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~e 792 (818)
+.+.+.+ ..++.+.++||.|+|+++++..+.. ...+..+.+.|+++||++.+.++++||+||+++|++
T Consensus 333 ~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~-----~~~~~~l~~~l~~~Gv~v~~~~~~lR~~p~l~~t~e 407 (423)
T PRK05964 333 AALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVL-----ERDGPALRAFALERGVLLRPLGNTIYLMPPYIITAE 407 (423)
T ss_pred HHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcc-----hhHHHHHHHHHHHCCeEEEecCCEEEEeCCcccCHH
Confidence 1222222 3467788999999999999975420 124667899999999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003466 793 VCSQLLLKLYQRLEEF 808 (818)
Q Consensus 793 dId~~~~~l~~~l~~l 808 (818)
|||+++++|+++++++
T Consensus 408 dId~~v~~l~~al~~~ 423 (423)
T PRK05964 408 ELDRITDAIVEVADEL 423 (423)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999764
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=544.45 Aligned_cols=370 Identities=19% Similarity=0.214 Sum_probs=286.8
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.......++...+||++|++
T Consensus 21 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~ 93 (442)
T TIGR00709 21 LPTAFAKAQGC--WVTDVEGK----EYLDFLAGAGTLALGHN-HPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLN 93 (442)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEccccHhhhcCCCC-CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH
Confidence 36688888886 79999999 99999999999999999 9999999999999866544334568999999999999
Q ss_pred ccCCC--CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCC
Q 003466 455 GVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (818)
Q Consensus 455 ~~~~~--~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~ 532 (818)
++|.+ ....+||+||||||||+|||+| |.||+| .+||+++++|||.|.+++++++...+
T Consensus 94 ~~p~~~~~~~~~f~~~sGsEA~e~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~~~s~t~~~~~ 154 (442)
T TIGR00709 94 IIPKRKMDYKLQFPGPSGADAVEAAIKLA-KTYTGR------------------TNVISFSGGFHGMTIGALAVTGNLFA 154 (442)
T ss_pred hCCCcCCCccEEEeCCCHHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCcCCchHHHHhhcCChhh
Confidence 88642 1234566799999999999999 788654 58999999999999999999985544
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
+..+ .+. . +++.+++.|+.++++ ||. . .+.....+.+.+++.++...
T Consensus 155 ~~~~--------~~~--~------~~~~~~~~~~~~~~~--------~~~-------~--~~~~~~~~~~~~~~~~~~~~ 201 (442)
T TIGR00709 155 KNAV--------GML--M------PGVQFMPYPHEYRCP--------FGI-------G--GEAGSNASIEYFENFIEDVE 201 (442)
T ss_pred hccC--------CCC--C------CCcEEeCCCcccccc--------ccC-------C--chhHHHHHHHHHHHHHHhhc
Confidence 3321 111 0 123344555544321 221 0 01111222334455553210
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg 692 (818)
...+++||||+||+ |+++|+++||++||++|+++|++||++||+|||+|||||||++|+++++|++|||+|+||+||
T Consensus 202 --~~~~~iaavi~Epi-~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~ 278 (442)
T TIGR00709 202 --SGVDKPAAVILEAI-QGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVG 278 (442)
T ss_pred --cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEccccc
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 693 GGVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
|| +|+|+++++++ ++.+..... ++.+.+.+..++++.+.+|||
T Consensus 279 ~G-~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG 356 (442)
T TIGR00709 279 GG-LPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRG 356 (442)
T ss_pred CC-cccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeec
Confidence 99 79999999988 455432111 111223333357899999999
Q ss_pred eeeEEEEEEecCcccC------CCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNA------GYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~------~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.|+|++++|..+.... ..+...+..+...|+++||++.+. +++|+|.||+++|++|||++++++++++.++
T Consensus 357 ~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 357 RGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEA 436 (442)
T ss_pred cceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999997652111 112345778899999999999874 6899999999999999999999999999876
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-60 Score=541.07 Aligned_cols=369 Identities=21% Similarity=0.265 Sum_probs=294.4
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||| +|||+++|+|+.++||+ ||+|++|+++|++++.+.....+.+++..+||++|++
T Consensus 36 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~ 108 (441)
T PRK05769 36 YPLVIERGEGV--WVEDVDGN----VYLDFNAGIAVTNVGHA-HPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVE 108 (441)
T ss_pred CCeeEEecceE--EEEeCCCC----EEEECCCchhhcccCCC-CHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHH
Confidence 46788888775 79999999 99999999999999999 9999999999999988765545678999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~ 533 (818)
.+|.+++++|+|++|||||||+|||+| |+|+++ .+||+++++|||+|.+++++++.. .++
T Consensus 109 ~~p~~~~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~~ls~t~~~~~~~ 169 (441)
T PRK05769 109 IAPGGFEKKVFFTNSGTESNEAAIKIA-RYHTGR------------------KYIIAFLGAFHGRTYGSLSLTASKPVQR 169 (441)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHH-HHHhCC------------------CeEEEECCCcCCccHHHHHhcCCCcccc
Confidence 887544689999999999999999999 778654 589999999999999999998643 222
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHH-HHhcCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ-NLLQNP 612 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~-~L~~~~ 612 (818)
.. |.+ . .++..+++.|+.++.+ ||+ .+.++....+.+.+++ +++..
T Consensus 170 ~~-----~~~---~--------~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~le~~~~~~~- 216 (441)
T PRK05769 170 KG-----FFP---L--------MPGVIHVPYPNPYRNP--------WGI--------ENPEECGNAVLDFIEDYLFKKL- 216 (441)
T ss_pred cC-----CCC---C--------CCCeEEeCCCcccccc--------ccC--------CchHHHHHHHHHHHHHHHHhhc-
Confidence 21 110 0 1234456666554321 221 0112233344566777 33311
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg 692 (818)
.+++++||||+||| |+++|+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.||++|+||++|
T Consensus 217 --~~~~~iaavi~Epv-~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~ 293 (441)
T PRK05769 217 --VPPEEVAAIIVEPI-QGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIA 293 (441)
T ss_pred --cCCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEccccc
Confidence 24678999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccceeecchHHHhhccCC-hH-----------------HHH---------------HHHHHHHHcCCCeeEEEeee
Q 003466 693 GGVIPLAATLATNAVFDSFVGD-SK-----------------LWD---------------LELIQQISSHRTVQRVVALG 739 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~-~~-----------------~~~---------------~~l~~~l~~~~~v~~vrg~G 739 (818)
|| +|+|++++++++++.+... .. +++ +.+.+...+++.+.+|||.|
T Consensus 294 ~G-~p~gav~~~~~i~~~~~~~~~~T~~g~p~~~aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G 372 (441)
T PRK05769 294 GG-LPLGAVIGRAELMFLPPGSHANTFGGNPVAAAAALATLEELEEGLLENAQKLGEYLRKELKELKEKYEFIGDVRGLG 372 (441)
T ss_pred CC-cccEEEEEehhhhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecce
Confidence 99 7999999999998754311 00 111 12222234578899999999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+|+++++..+. ..++...+..+.+.|+++||++.+.+ +++||+||++||++|||++++++++++.++
T Consensus 373 ~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 373 LMIGVELVKDR--KEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred EEEEEEeccCC--ccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999997652 22234567788999999999998866 899999999999999999999999998753
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=537.19 Aligned_cols=362 Identities=22% Similarity=0.259 Sum_probs=292.9
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.+.....+.++...+|+++|++.
T Consensus 23 p~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~ 95 (425)
T PRK07495 23 QIYADRAENA--EIWDKEGR----RYIDFAAGIAVVNTGHR-HPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNAL 95 (425)
T ss_pred CeeEEeeeec--EEEeCCCC----EEEEccccHHhhccCCC-CHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHh
Confidence 6788888886 79999999 99999999999999999 99999999999999877654456789999999999998
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCCC
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~~ 534 (818)
+|.++.++|+|++|||||||+|||+| |.|+++ .+||+|+++|||+|.+++++++.. .++.
T Consensus 96 ~p~~~~~~v~f~~SGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 156 (425)
T PRK07495 96 VPGDFAKKTIFVTTGAEAVENAVKIA-RAATGR------------------SAVIAFGGGFHGRTFMGMSLTGKVVPYKV 156 (425)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCCccHHHhhhcCCCccccc
Confidence 87543479999999999999999999 777654 489999999999999999998742 2222
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. .++. .++..++++|+.+++ . . ...+.+.+++.++..
T Consensus 157 ~--------~~~~--------~~~~~~~~~~~~~~g--------------------~---~-~~~~~~~l~~~~~~~--- 193 (425)
T PRK07495 157 G--------FGAM--------MPDVYHVPFPVELHG--------------------V---S-VEQSLAALDKLFKAD--- 193 (425)
T ss_pred C--------CCCC--------CCCeEEecCCccccc--------------------c---c-HHHHHHHHHHHHHhc---
Confidence 1 1111 123445555543210 0 0 112345667777521
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.+++++||||+||+ |+++|++++|++|+++|+++|++||++||+|||+|||||+|++|+++++|++|||+||||+||||
T Consensus 194 ~~~~~iaavi~EPv-~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G 272 (425)
T PRK07495 194 VDPQRVAAIIIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG 272 (425)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... ++.+++.+..+++|.+.+|||.|
T Consensus 273 -~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G 351 (425)
T PRK07495 273 -FPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIADIRGPG 351 (425)
T ss_pred -ccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCc
Confidence 699999999999987754211 11122333335578899999999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+|+++++.++.. ..++...+..+.+.|+++|+++.+. ++++||.||+++|++|||+++++|+++++++.
T Consensus 352 l~~~iel~~~~~-~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 352 FMNAVEFNDADS-GLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred eEEEEEEecCCC-CCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 999999976432 2234455778899999999999764 48999999999999999999999999998765
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=508.20 Aligned_cols=348 Identities=30% Similarity=0.421 Sum_probs=280.1
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|.++++++|. .+||.+|+ +||||+|+||+..+||+ ||+|.+|+.+|+.+++|+++..++.+ +.+|+++|.
T Consensus 37 ~~pv~~~~gkg~--kl~D~~g~----EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~ 108 (433)
T KOG1401|consen 37 RYPVVIESGKGS--KLFDPDGK----EYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLS 108 (433)
T ss_pred CCceeeecceee--eeecCCcc----eeeeeccceeccccCCC-CHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHH
Confidence 466788888775 79999999 99999999999999999 99999999999999999986555555 999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+.++.++.++|||+|||+||||+|||+| |.++...- ...+.+||+|+|||||+|+++|++++.+.|+
T Consensus 109 ~~~~~~~~~rvff~nsGTeAne~ALK~A-rk~~~~~~------------~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~ 175 (433)
T KOG1401|consen 109 AVLGKGSAERVFFCNSGTEANETALKFA-RKFTGKKH------------PEKKTKFIAFENSYHGRTLGALSVTGNSKYG 175 (433)
T ss_pred hcccCCCccEEEEecCCcHHHHHHHHHH-HHhhcccC------------CccceeEEEEecCcCCcchhHHHhhcccccC
Confidence 9998878899999999999999999999 66654321 1334689999999999999999999877665
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
-+ +++- .|+-. +.+|||+ .++++.++
T Consensus 176 ~~------------~~p~------------~p~v~--------~~~ynd~------------------t~l~k~~~---- 201 (433)
T KOG1401|consen 176 LP------------FDPI------------APDVV--------TAEYNDS------------------TALEKLFE---- 201 (433)
T ss_pred CC------------CCCC------------CCcee--------ecccCCH------------------HHHHHHHH----
Confidence 53 1110 11111 1336764 67888887
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+.++|||||+||| ||+||+++++++|+..||.+|+++|++||+|||||||||+|..|++++++++|||.|+||.|||
T Consensus 202 -~h~~~IaAVIvEPi-qGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~g 279 (433)
T KOG1401|consen 202 -SHKGEIAAVIVEPI-QGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGG 279 (433)
T ss_pred -hCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeehhhccC
Confidence 56788999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH--------------------------------------HHHHHHHHHHHcCCC-eeE
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK--------------------------------------LWDLELIQQISSHRT-VQR 734 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~--------------------------------------~~~~~l~~~l~~~~~-v~~ 734 (818)
| +|+||++++++|++.+..+.+ .+++.+.+.+.+.+. +..
T Consensus 280 G-lPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g 358 (433)
T KOG1401|consen 280 G-LPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSICG 358 (433)
T ss_pred C-ceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCceee
Confidence 9 899999999999998876543 122333444455555 344
Q ss_pred EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-----CEEEEEC--CCCC--hHHHHHHHHHHHHHHH
Q 003466 735 VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMC--GPCS--SPEVCSQLLLKLYQRL 805 (818)
Q Consensus 735 vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-----~~ir~~p--pl~~--t~edId~~~~~l~~~l 805 (818)
.+|+|+++++++..+ ...+....+++|.+..+.+ ..+|+.| ++++ |+|.++++++++++.+
T Consensus 359 ~~grgl~ig~~~~~p----------~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i~~~~l 428 (433)
T KOG1401|consen 359 GVGRGLVIGFEFEGP----------VYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTILEKVL 428 (433)
T ss_pred eeeeEEEEEEEEeec----------hhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHHHHHHH
Confidence 499999999999765 2233444444444443321 3466777 4444 4899999999999998
Q ss_pred HHHH
Q 003466 806 EEFD 809 (818)
Q Consensus 806 ~~l~ 809 (818)
.++.
T Consensus 429 ~~~~ 432 (433)
T KOG1401|consen 429 SALN 432 (433)
T ss_pred HHhc
Confidence 8763
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=492.87 Aligned_cols=348 Identities=22% Similarity=0.297 Sum_probs=288.6
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|.++.+++|. ++||.+|+ +|+||.|++.+++.||| ||.|++|+++|++++...+. .+.+....++++.+..+
T Consensus 42 pvvf~ka~g~--~vwD~eGk----~ylDflsaysaVnqGhc-hpki~~aLqeq~~kLtlssr-afYnd~~~~f~~~vt~l 113 (427)
T KOG1402|consen 42 PVVFSKAKGS--RVWDPEGK----EYLDFLSAYSAVNQGHC-HPKIIKALQEQADKLTLSSR-AFYNDVLGEFAEYVTKL 113 (427)
T ss_pred ceEEEecCCc--EEECCCcc----chhhhhhhhhhcccCCC-CHHHHHHHHHHHhHhhhhhH-HHhhhhHHHHHHHHHHh
Confidence 5678888886 79999999 99999999999999999 99999999999999875542 35688999999999999
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCc
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~ 535 (818)
+| .++|+-.|||.||+|+|+|+||++.+..++- +..+.+|++-.++|||+|++++++++.+....
T Consensus 114 f~---~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~i-----------p~nka~il~~~~nFhGrT~~ais~s~d~ds~~- 178 (427)
T KOG1402|consen 114 FG---YDKVLPMNTGAEAVETACKLARKWGYRKKNI-----------PKNKAKILSAENNFHGRTLGAISLSTDPDSWD- 178 (427)
T ss_pred cC---cceeeecccchhHHHHHHHHHHHHHHhhccC-----------CccceeEEEecccccCceeeeEEecCCcchhh-
Confidence 98 5899999999999999999994444444332 13678999999999999999999997652222
Q ss_pred CCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 003466 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (818)
Q Consensus 536 ~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~ 615 (818)
++|+++ |.+ +.. ++|||. ++|+..|+
T Consensus 179 -------~fgp~~--P~~-----~~~----------------v~Y~d~------------------eale~~l~------ 204 (427)
T KOG1402|consen 179 -------GFGPFL--PGV-----VDK----------------VPYGDA------------------EALEVALK------ 204 (427)
T ss_pred -------ccCCCC--CCc-----cee----------------eccCCH------------------HHHHHHhc------
Confidence 223322 211 111 337774 67888886
Q ss_pred CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCc
Q 003466 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (818)
Q Consensus 616 ~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy 695 (818)
..++||+|+||| ||++|+++||++||+++|+||++|+++||+||||||+||||+++++++.+|+|||++|||+|+||+
T Consensus 205 -~~~vaaFivEPI-QGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~ 282 (427)
T KOG1402|consen 205 -SPNVAAFIVEPI-QGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGGV 282 (427)
T ss_pred -CCCeeEEEeecc-ccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCCe
Confidence 478999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeecchHHHhhccCChH--------------------HHHHH-----------HHHHHH----cCCC-eeEEEeee
Q 003466 696 IPLAATLATNAVFDSFVGDSK--------------------LWDLE-----------LIQQIS----SHRT-VQRVVALG 739 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~~~~~--------------------~~~~~-----------l~~~l~----~~~~-v~~vrg~G 739 (818)
+|+|||++++++|-.+.++.+ +.++. ++.+|. ++|. +.+|||+|
T Consensus 283 ~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrG 362 (427)
T KOG1402|consen 283 YPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRG 362 (427)
T ss_pred eeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccc
Confidence 999999999999998876654 11111 233333 3443 68999999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-cCCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-LGNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-~g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
++.+|++...+. ....++.+|-.|.++|++..| .++.|||.||++|+++|+++.++++.+++.
T Consensus 363 l~~ai~i~~~~~----~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 363 LLNAIVINPSKT----SGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred eEEEEEeccccc----cchhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 999999985531 114578889999999999998 469999999999999999999999988763
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-59 Score=576.95 Aligned_cols=366 Identities=19% Similarity=0.185 Sum_probs=294.6
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ||||.||| +||||++|+ .++||+ ||+|++|+++|++++.... .+.++...+||++|++
T Consensus 606 ~p~~i~~g~G~--~l~D~dG~----~ylD~~~g~--~~lGH~-hp~v~~Ai~~q~~~l~~~~--~~~~~~~~~lAe~L~~ 674 (1013)
T PRK06148 606 DPIKFVRGWGV--WLIDNRGR----AYLDCFNNV--CHVGHA-HPRVVAAAARQAARLNTNT--RYLHDAIVAYAERLTA 674 (1013)
T ss_pred CCceEEEeeec--EEEECCCC----EEEEcccCh--hhcCCC-CHHHHHHHHHHHhhcCCcC--CcCCHHHHHHHHHHHH
Confidence 46788898886 79999999 999999984 789999 9999999999999974322 4678999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.+|.+ +++|+|+||||||||+|||+| |.||++ .+||+|+++|||+|.+++++++.. ++.
T Consensus 675 ~~p~~-~~~v~f~nSGsEA~e~AlklA-r~~tGr------------------~~ii~~~~~YHG~t~~a~s~s~~~-~~~ 733 (1013)
T PRK06148 675 TLPDG-LTVAFFVNSGSEANSLALRLA-RAHTGQ------------------RDAIVLDHAYHGTTTELIDLSPYK-FNR 733 (1013)
T ss_pred hCCCC-cCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCccCCCcchhhcCchh-hcc
Confidence 98754 689999999999999999999 888764 489999999999999999998743 222
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
+ +.. . ..+.+.+++.|++++. +||+. ..+....|.+.+++.++...
T Consensus 734 ~----~~~----~-------~~~~~~~~~~p~~~~~--------~~~~~---------~~~~~~~~~~~l~~~i~~~~-- 779 (1013)
T PRK06148 734 K----GGK----G-------RPDHVEVAEVPDSYRG--------PERWP---------DAEHGRRFAESVAEQIAAMA-- 779 (1013)
T ss_pred c----CCC----C-------CCCCceEcCCCCcccc--------CCCCC---------hhhhHHHHHHHHHHHHHhhh--
Confidence 1 110 0 0122345556665542 24421 01223344566666664211
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCCCCcEEEecccccC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+ ||+++++||+|||+|+||+|||
T Consensus 780 ~~~~~iAAvI~EPv-~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lgg 858 (1013)
T PRK06148 780 AKGRGPAFFIAESI-PSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGN 858 (1013)
T ss_pred ccCCceEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccC
Confidence 34578999999998 999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh-H-----------------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 694 GVIPLAATLATNAVFDSFVGDS-K-----------------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~-~-----------------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
| +|+||+++++++++.+..+. . ++.+.+.+..++++.+++|||
T Consensus 859 G-~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG 937 (1013)
T PRK06148 859 G-HPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRG 937 (1013)
T ss_pred C-cceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 9 69999999999999875431 1 222334444467899999999
Q ss_pred eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.|+|+++++..+.....++...+..+.+.|+++||++.+.| +++||.||+++|++|||+++++|+++++++
T Consensus 938 ~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 938 MGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred eceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999986543333444567789999999999998744 899999999999999999999999999765
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-59 Score=528.56 Aligned_cols=380 Identities=28% Similarity=0.457 Sum_probs=299.9
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
|.+.+..++|+||+.... ...+..+++++|. ++||.||+ +||||++|+|+.++||+ ||+|++|+++|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~~~~~~ 77 (427)
T TIGR00508 7 LLAFDQRHIWHPYTSMSS--PLPVYPVESADGV--ELTLDDGR----RLIDGMSSWWAAIHGYN-HPRLNAAAQKQIDKM 77 (427)
T ss_pred HHhccccccccCccCccc--cCCCceEEeeeee--EEEeCCCC----EEEEccchHHHhcCCCC-CHHHHHHHHHHHHhc
Confidence 445556678988876521 1234567787775 79999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
++..+...+++...+|+++|++.+|.+ +++|+|++||+||||.|+|+| |.|++.+|. ++|.+||+|
T Consensus 78 ~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~~~------------~~r~~il~~ 143 (427)
T TIGR00508 78 SHVMFGGFTHKPAIELCQKLVKMTPNA-LDCVFLADSGSVAVEVALKMA-LQYWQAKGE------------KNRQKFLTI 143 (427)
T ss_pred CCccccccCCHHHHHHHHHHHhhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC------------CCccEEEEE
Confidence 876655567899999999999998755 689999999999999999999 677654443 567899999
Q ss_pred cCCCCCCccccccccCCCC-CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhccc
Q 003466 513 KGSYHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~-~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~ 591 (818)
+++|||.|.+++++++... ++.. +.+ . .++..+++.|... |..
T Consensus 144 ~~~yHG~t~~~~s~~~~~~~~~~~-----~~~---~--------~~~~~~~~~p~~~-----------~~~--------- 187 (427)
T TIGR00508 144 RSGYHGDTFGAMSVCDPENSMHSL-----YKG---Y--------LPEQIFAPAPQNR-----------FDE--------- 187 (427)
T ss_pred cCCcCCccHhhhcccCCccccccc-----ccc---c--------CCCCeEcCCCCcc-----------ccc---------
Confidence 9999999999999987532 2211 110 0 0111223333211 100
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc
Q 003466 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (818)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~ 671 (818)
.....+.+.+++.++. .++++||||+|||+|++||+++++++||++|+++|++||++||+|||||||||+|+
T Consensus 188 ---~~~~~~~~~l~~~l~~-----~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~ 259 (427)
T TIGR00508 188 ---EWNEEAITPLAKLMEL-----HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK 259 (427)
T ss_pred ---hhHHHHHHHHHHHHHh-----cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc
Confidence 0011123566777763 35689999999976999999999999999999999999999999999999999999
Q ss_pred cchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC-------h------H-----------HH---------
Q 003466 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------S------K-----------LW--------- 718 (818)
Q Consensus 672 ~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-------~------~-----------~~--------- 718 (818)
+|+++++|+.|||+|+||+|+|||+|++++++++++++.+... . . ++
T Consensus 260 ~~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~ 339 (427)
T TIGR00508 260 LFACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQV 339 (427)
T ss_pred cchhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999999998877531 0 0 11
Q ss_pred ---HHHHHHH---HHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHH
Q 003466 719 ---DLELIQQ---ISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPE 792 (818)
Q Consensus 719 ---~~~l~~~---l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~e 792 (818)
.+.+.+. +..++.+.++||.|+++++++..+ ..+..+.++|+++||++.+.++++|+.||+++|++
T Consensus 340 ~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~--------~~~~~~~~~l~~~Gv~~~~~~~~l~~~ppl~~t~~ 411 (427)
T TIGR00508 340 SAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKP--------VNVEELQKKFVEQGVWIRPFGKLIYVMPPYIITTE 411 (427)
T ss_pred HHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCc--------cCHHHHHHHHHHCCeEEEecCCEEEEECCCCCCHH
Confidence 1122222 344566789999999999999643 12467889999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003466 793 VCSQLLLKLYQRLEE 807 (818)
Q Consensus 793 dId~~~~~l~~~l~~ 807 (818)
|||++++++++++++
T Consensus 412 ~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 412 QLQKLTAALIEALHE 426 (427)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=525.46 Aligned_cols=369 Identities=21% Similarity=0.237 Sum_probs=296.1
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.+.......+++..+||++|++
T Consensus 23 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 95 (443)
T PRK08360 23 YPLVPVKAENA--KVWDIEGN----EYIDFLSDAAVQNVGHN-NPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIE 95 (443)
T ss_pred CCceEEeccee--EEEECCCC----EEEEccccHhhcccCCC-CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH
Confidence 36788888876 79999999 99999999999999999 9999999999999988766544568999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~ 533 (818)
.+|.+ +++|+|++|||||||+|||+| |.||+| .+||++.++|||+|.+++++++.. .++
T Consensus 96 ~~p~~-~~~v~f~~sGsEAve~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 155 (443)
T PRK08360 96 IAPGD-NPKVSFGLSGSDANDGAIKFA-RAYTKR------------------RKILSYLRSYYGSTYGAMSLTGLDFPVR 155 (443)
T ss_pred hCCCC-CCEEEEcCCHHHHHHHHHHHH-HHhcCC------------------CeEEEEeCCcCCcCHHHHHhcCCCcccc
Confidence 98754 579999999999999999999 788654 589999999999999999998742 122
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .++ + ++..+++.|+.++.. +.+ ....+...+.+.+++.++..
T Consensus 156 ~~--------~~~---~------~~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~l~~~-- 199 (443)
T PRK08360 156 AL--------VGE---L------SDVHYIPYPDCYRCP--------FGK---------EPGSCKMECVEYIKEKFEGE-- 199 (443)
T ss_pred cC--------CCC---C------CCcEEEeCCcccccc--------ccC---------chhhhHHHHHHHHHHHHHhc--
Confidence 21 111 1 233455556544311 100 00122223445677777531
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+++++||||+||+ |+.+|++++|++|+++|+++|++||++||+|||+|||||+|++|+++++|+.||++|+||++++
T Consensus 200 -~~~~~iAAvi~eP~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~ 277 (443)
T PRK08360 200 -VYAEGVAALFAEPI-QGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGG 277 (443)
T ss_pred -cCCCCeEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccC
Confidence 23578999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~ 738 (818)
| +|+|++++++++++.+..... ++.+.+.+...+++.+.+|||.
T Consensus 278 G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~ 356 (443)
T PRK08360 278 G-LPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGI 356 (443)
T ss_pred C-ceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecc
Confidence 9 799999999999987753211 1111222223457889999999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
|+|++++|..+.....++...+..+.+.|+++|+++.+ .++++||.||+++|++|||+++++|++++++++
T Consensus 357 Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~ 428 (443)
T PRK08360 357 GLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVE 428 (443)
T ss_pred ceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999865322333444567889999999999986 469999999999999999999999999999875
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=525.49 Aligned_cols=367 Identities=24% Similarity=0.292 Sum_probs=292.3
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|+++++++|. ++||.||| +||||+||+|+.++||+ ||+|++|+++|++++.+.+.....++++.+|+++|+++
T Consensus 26 ~~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 98 (433)
T PRK08117 26 NLPVVKGEGC--YYYGVDGK----EYLDFTSGIAVANVGHR-HPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEI 98 (433)
T ss_pred CceEEeeeee--EEEeCCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 3688888886 79999999 99999999999999999 99999999999999887654446789999999999999
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCC-CCCCC
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTG 534 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~-~~~~~ 534 (818)
+|++ .++|+|+||||||||+|||+| |.|+++ .+||+++++|||+|.+++++++. ..++.
T Consensus 99 ~~~~-~~~v~f~~SGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 158 (433)
T PRK08117 99 TPGG-LDCFFFSNSGAEAIEGALKLA-KHVTKR------------------PYIISFTGCFHGRTLGALSVTTSKSKYRK 158 (433)
T ss_pred CCCC-CCEEEEeCcHHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCcCHHHHhhcCCCccccc
Confidence 8644 689999999999999999999 777654 58999999999999999998864 22222
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ .| ..+++.+++.|++++++.. .+.......+.+.+++.+++.
T Consensus 159 ~~-~~---------------~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~--- 202 (433)
T PRK08117 159 YY-QP---------------LLGSVYQAPYPYCDRCPKG-----------------EDPEVCFLECLRDLESLFKHQ--- 202 (433)
T ss_pred cC-CC---------------CCCCcEEeCCCcccccccc-----------------CchhHHHHHHHHHHHHHHHhc---
Confidence 10 00 0123455666655432100 000112223346677777631
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
..++++||||+||| |+++|+++||++|+++|+++|++||++||+|||||||||+|++|+++++|+.|||+|+||+||||
T Consensus 203 ~~~~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G 281 (433)
T PRK08117 203 VTPEEVAAVIIEPV-LGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG 281 (433)
T ss_pred cCCCcEEEEEECCe-eCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC
Confidence 23578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HH----------------HHHHHHHHHcCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LW----------------DLELIQQISSHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~----------------~~~l~~~l~~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... .+ .+.+.+...+++.+.++||.|
T Consensus 282 -~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G 360 (433)
T PRK08117 282 -LPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIG 360 (433)
T ss_pred -CcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 799999999999987643211 11 111222224577788999999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+|+++++..+. ..++...+..+.+.|+++||++.+. ++++|+.||+++|++||++++++|+++++++.
T Consensus 361 l~~gi~~~~~~--~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~ 431 (433)
T PRK08117 361 LMIGIEIVDPD--GEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEYE 431 (433)
T ss_pred cEEEEEEecCC--CCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999997652 2233345677889999999999764 38999999999999999999999999997763
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-58 Score=523.46 Aligned_cols=369 Identities=21% Similarity=0.287 Sum_probs=292.0
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|+++++++|. |+||.||| +||||.+|+|+.++||+ ||+|.+|+++|++++.+..+..+.+++..+||++|+++
T Consensus 37 ~~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 109 (451)
T PRK06918 37 PTFAQSANGA--LVTDVDGN----QYIDFAGAIGTINVGHS-HPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAAL 109 (451)
T ss_pred CceEEecccc--EEEeCCCC----EEEEcCCchhhcCCCCC-CHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHh
Confidence 5688888886 79999999 99999999999999999 99999999999999877654446789999999999999
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCCC
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~~ 534 (818)
+|.++.++|+|++|||||||+|||+| |.|++| .+||+|+++|||+|.+++++++.. .++.
T Consensus 110 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 170 (451)
T PRK06918 110 APGSFDKKVLFLNSGAEAVENAVKIA-RKYTKR------------------QGIISFSRGFHGRTLMTMTMTSKVKPYKF 170 (451)
T ss_pred CCCCCCCEEEEcCCcHHHHHHHHHHH-HHHhCC------------------CcEEEECCCcCccchhhhhhcCCCccccc
Confidence 87543369999999999999999999 888754 589999999999999999998742 2322
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. +++. .+++.+++.|++++++. . .........+.+.+++.+...
T Consensus 171 ~--------~~~~--------~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~--- 214 (451)
T PRK06918 171 G--------FGPF--------APEVYKAPFPYEYRRPE--------G---------LTEEQYDDFMIEEFKNFFISE--- 214 (451)
T ss_pred c--------CCCC--------CCCcEEcCCCccccccc--------c---------CchHHHHHHHHHHHHHHHHhh---
Confidence 1 1111 12334555565443210 0 001122233344555555321
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.+++++||||+||| |++||+++||++|+++|+++|++||++||+|||+|||||+|++|+++++++.||+++|||+|++|
T Consensus 215 ~~~~~iAavi~EPi-~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G 293 (451)
T PRK06918 215 VAPETIAAVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG 293 (451)
T ss_pred cCCCceEEEEECcc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... .+.+.+.+..++++.+.+|||.|
T Consensus 294 -~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G 372 (451)
T PRK06918 294 -VPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLG 372 (451)
T ss_pred -CccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceeeccce
Confidence 799999999999987743211 11112222224577789999999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+|+++++..+.....++...+..+.+.|+++||++.+.+ +.+||.||+++|+++|++++++|+++++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 373 AMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred eEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 999999974321122344567788999999999999853 899999999999999999999999999776
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=510.87 Aligned_cols=333 Identities=21% Similarity=0.246 Sum_probs=274.0
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|.++++++|. |+||.||| +|||+.+|+|+.++||+ ||+|++|+++|++++.+... .+.+++..+|+++|+
T Consensus 5 ~~~~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~l~ 76 (364)
T PRK04013 5 RKRLRLVRGEGI--YVWDSQGR----RYLDLIAGIGVNVLGHN-HPEWVEEMSEQLEKLVVAGP-MFEHEEKEEMLEELS 76 (364)
T ss_pred CCCccEEEeecC--EEEECCCC----EEEEcccChhhccCCCC-CHHHHHHHHHHHHhcCCccC-CcCCHHHHHHHHHHH
Confidence 346678888887 79999999 99999999999999999 99999999999999876543 467999999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+..+ .++++|++|||||+|.|||+| |.|++| .+||+++++|||+|.+++++++.+.++
T Consensus 77 ~~~~---~~~v~~~~SGseA~e~Alkla-r~~~gr------------------~~Ii~~~~syHG~t~~~ls~~~~~~~~ 134 (364)
T PRK04013 77 KWVN---YEYVYMGNSGTEAVEAALKFA-RLYTGR------------------KEIIAMTNAFHGRTMGALSATWKPKYR 134 (364)
T ss_pred hhcC---CCEEEEeCchHHHHHHHHHHH-HHHhCC------------------CEEEEECCccccCchhhccCCCCcccc
Confidence 9885 579999999999999999999 777653 589999999999999999999866554
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
..+ .| .+ ++..++ +|||. +.+++.+.
T Consensus 135 ~~~-~p-------~~--------~~~~~~----------------~~~d~------------------~~l~~~i~---- 160 (364)
T PRK04013 135 EDF-EP-------LV--------PGFKHI----------------PFNDV------------------EAAKEAIT---- 160 (364)
T ss_pred cCC-CC-------CC--------CCcEEe----------------cCCCH------------------HHHHHHhc----
Confidence 421 01 00 111111 24442 34555553
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
++++|||+||+ |++||++++|++||++++++|++||++||+|||+||| |||++|+++++|+.|||+|+||+|||
T Consensus 161 ----~~~aAvivEpi-~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~lgg 234 (364)
T PRK04013 161 ----KETAAVIFEPI-QGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGN 234 (364)
T ss_pred ----CCcEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccccC
Confidence 47999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH---------------HHH-HH-------HHHHHHcCCCeeEEEeeeeEEEEEEecCc
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK---------------LWD-LE-------LIQQISSHRTVQRVVALGTLCAIELQAAG 750 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~---------------~~~-~~-------l~~~l~~~~~v~~vrg~Gl~~~iel~~~~ 750 (818)
| +|+||++.++++......... .++ +. .++.+ ..+.+.+|||.|+|+++|+..+
T Consensus 235 G-~P~~a~~~~~~~~~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~l~~l-~~~~v~~vRG~Gl~~gve~~~~- 311 (364)
T PRK04013 235 G-VPVSLTLTNFDVERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEKFIEI-KGERVVTTRGRGLMIGIVLKKP- 311 (364)
T ss_pred C-ceeEEEEecccccCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHh-ccCcceeeeeCcEEEEEEeCCc-
Confidence 9 799999999886432211110 111 11 12222 2367899999999999999643
Q ss_pred ccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 751 CNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 751 ~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+..+.+.|+++|+++.+.| +++||.||+++|++|+++++++|+++++++
T Consensus 312 ---------~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 312 ---------VGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred ---------HHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence 4468899999999999876 899999999999999999999999999764
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=516.09 Aligned_cols=367 Identities=22% Similarity=0.242 Sum_probs=291.5
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+....+++..+|+++|+
T Consensus 14 ~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~ 86 (420)
T TIGR00700 14 TLPVFAARAEGA--ILEDVDGN----RLIDFASGIAVLNIGHS-HPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLN 86 (420)
T ss_pred CCCeeEEeeeee--EEEeCCCC----EEEECccCHHhccCCCC-CHHHHHHHHHHHHhccCccccccCChHHHHHHHHHH
Confidence 347788898886 79999999 99999999999999999 999999999999998776544466889999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PY 532 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~ 532 (818)
+.+|...+++|+|++|||||||+|||+| |.|+++ .+||+|+++|||+|.+++++++.. .+
T Consensus 87 ~~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~ 147 (420)
T TIGR00700 87 RIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYTGR------------------PGVVAFDHGFHGRTNMTMALTAKVMPY 147 (420)
T ss_pred HhCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CcEEEECCCcCCCcHHHHHhcCCCccc
Confidence 9887433579999999999999999999 788654 489999999999999999998753 12
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
+.. .++. .++..+++.|+++++.. .. .......+.+.+++.+...
T Consensus 148 ~~~--------~~~~--------~~~~~~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~- 192 (420)
T TIGR00700 148 KSG--------FGPF--------APEVYRAPLPYPYRDGL--------LD----------KQLSTDGELAAARAIFVID- 192 (420)
T ss_pred ccC--------CCCC--------CCCcEEeCCCccccccc--------cc----------cchhHHHHHHHHHHHHHhh-
Confidence 221 1111 12334556665543210 00 0011122345667666311
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg 692 (818)
.+++++||||+||| |+++|+++++++|+++|+++|++||++||+|||+|||||+|++|+++++|+.|||+||||+++
T Consensus 193 --~~~~~iAavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~ 269 (420)
T TIGR00700 193 --VGANNVAALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLA 269 (420)
T ss_pred --cCCCcEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeecccc
Confidence 34689999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 693 GGVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
|| +|+|++++++++++.+..... .+.+.+.+....++.+.+|||
T Consensus 270 ~G-~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg 348 (420)
T TIGR00700 270 DG-LPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRG 348 (420)
T ss_pred CC-cceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEeec
Confidence 99 799999999999987742111 111122233355788899999
Q ss_pred eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.|+|+++++.++. ...++...+..+.+.|+++||++.|. ++.+||.||+++|+++|++++++|++++.
T Consensus 349 ~G~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 349 LGAMIAVELVDPG-TTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred cceEEEEEEecCC-CCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 9999999996432 12234456778889999999999985 48999999999999999999999998874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=516.51 Aligned_cols=359 Identities=21% Similarity=0.270 Sum_probs=288.1
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 23 p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 95 (421)
T PRK06777 23 DFYAERAENA--TLWDVEGR----EYIDFAAGIAVLNTGHR-HPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINAL 95 (421)
T ss_pred CeeEEeeecC--EEEeCCCC----EEEEcccCHHhhccCCC-CHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHh
Confidence 6788898886 79999999 99999999999999999 99999999999999887655446789999999999998
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCCC
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~~ 534 (818)
+|.+.+++++|++|||||||+|||+| |.|++| .+||+|+++|||+|.+++++++.. .++.
T Consensus 96 ~p~~~~~~~~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~t~~~~~~~~ 156 (421)
T PRK06777 96 APIDGPAKTAFFTTGAEAVENAVKIA-RAYTGR------------------PGVIAFGGAFHGRTLLTMALTGKVAPYKV 156 (421)
T ss_pred CCCCCCceEEEeCCcHHHHHHHHHHH-HHhhCC------------------CeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence 86433579999999999999999999 778654 489999999999999999998742 2222
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. ++++ .++..+++.|+..+. . ....+.+.+++.+++.
T Consensus 157 ~--------~~~~--------~~~~~~~~~p~~~~~-----------~-------------~~~~~~~~l~~~~~~~--- 193 (421)
T PRK06777 157 G--------FGPF--------PGSIFHALYPNELHG-----------V-------------SVEEALSSVERLFKAD--- 193 (421)
T ss_pred C--------CCCC--------CCCcEEcCCCccccC-----------c-------------CHHHHHHHHHHHHHhc---
Confidence 1 1111 012334444532210 0 0112345677777521
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.+++++||||+||| |+++|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++|+||+++||
T Consensus 194 ~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G 272 (421)
T PRK06777 194 IAPDQVAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG 272 (421)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... ++.+.+.+...+++.+.+|||.|
T Consensus 273 -~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G 351 (421)
T PRK06777 273 -MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARG 351 (421)
T ss_pred -CceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCce
Confidence 799999999999987753211 11122222234578899999999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+|+++++..+. ...++...+..+.+.|+++||++.|. ++.+||.||+++|+++|++++++|++++.
T Consensus 352 ~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 352 SMVAVEFNDPQ-TGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred EEEEEEEecCc-cCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999996532 11233456777888899999999885 47999999999999999999999998873
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-57 Score=515.46 Aligned_cols=360 Identities=21% Similarity=0.259 Sum_probs=288.7
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. +|||.||| +|||+++|+|+.++||+ ||+|.+|+++|++++.+..+..+.+++..+|+++|++
T Consensus 22 ~~~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~ 94 (421)
T PRK09792 22 CNFFAQSAENA--TLKDVEGN----EYIDFAAGIAVLNTGHR-HPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINA 94 (421)
T ss_pred CCeeEEecccc--EEEeCCCC----EEEEccCchhhhcCCCC-CHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHH
Confidence 35688898886 79999999 99999999999999999 9999999999999987765545679999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~ 533 (818)
.+|....++++|++|||||||+|||+| |.|+++ .+||+|+++|||+|.+++++++.. .++
T Consensus 95 ~~p~~~~~~~~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 155 (421)
T PRK09792 95 LAPVSGQAKTAFFTTGAEAVENAVKIA-RAHTGR------------------PGVIAFSGGFHGRTYMTMALTGKVAPYK 155 (421)
T ss_pred hCCCCCCceEEEeCChHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHhhcCCCcccc
Confidence 876432479999999999999999999 777654 489999999999999999998742 122
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .+++ .+++.++++|...+. .....+.+.+++.+++.
T Consensus 156 ~~--------~~~~--------~~~~~~v~~p~~~~~------------------------~~~~~~~~~l~~~~~~~-- 193 (421)
T PRK09792 156 IG--------FGPF--------PGSVYHVPYPSDLHG------------------------ISTQDSLDAIERLFKSD-- 193 (421)
T ss_pred cC--------CCCC--------CCCcEEcCCCccccc------------------------ccHHHHHHHHHHHHHhc--
Confidence 21 1111 122345555533210 00112346677777631
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
..++++||||+||+ |+++|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++|++|||+||||+|+|
T Consensus 194 -~~~~~iaavi~EPv-q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~ 271 (421)
T PRK09792 194 -IEAKQVAAIIFEPV-QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAG 271 (421)
T ss_pred -cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcC
Confidence 13578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-------------------HH----------------HHHHHHHHHcCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-------------------LW----------------DLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-------------------~~----------------~~~l~~~l~~~~~v~~vrg~ 738 (818)
| +|+|++++++++++.+..... ++ .+.+.+..+++|.+.++||.
T Consensus 272 G-~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~ 350 (421)
T PRK09792 272 G-MPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGL 350 (421)
T ss_pred C-CceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCcceeccc
Confidence 9 699999999999987753211 11 11122223457889999999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
|+|+++++.++.. ..++...+..+++.|+++||++.+. ++.|||.||+++|++||++++++|+++++
T Consensus 351 Gl~~~ie~~~~~~-~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 351 GSMIAAEFNDPQT-GEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred ceEEEEEecCCcc-CCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 9999999975421 1223345778899999999999753 48999999999999999999999999874
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=518.40 Aligned_cols=356 Identities=21% Similarity=0.254 Sum_probs=280.7
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ||||.||| +||||+||+|+.++||+ ||+|.+|+++|++++++.......+++..+|+++|++
T Consensus 21 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 93 (425)
T PRK09264 21 FPVVFDKAKGS--WLYDEDGK----EYIDFFAGAGALNYGHN-NPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEE 93 (425)
T ss_pred CCccEEeeecC--EEEeCCCC----EeeecccchhhccCCCC-CHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 35688888886 79999999 99999999999999999 9999999999999876654444568999999999999
Q ss_pred cc--CCCCCC-cEEEe-CChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC
Q 003466 455 GV--GKGWAS-RAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (818)
Q Consensus 455 ~~--~~~~l~-~v~f~-~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~ 530 (818)
.+ +.+ ++ +++|+ ||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++..
T Consensus 94 ~~~~~~~-~~~~~~f~~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~ls~~~~~ 153 (425)
T PRK09264 94 TILKPRG-LDYKVQFTGPTGTNAVEAALKLA-RKVTGR------------------TNIVAFTNGFHGMTLGSLAVTGNS 153 (425)
T ss_pred hhcCCcC-CCceEEEeCCCHHHHHHHHHHHH-HHhcCC------------------CeEEEECCccCCccHHHHHhcCCc
Confidence 74 222 33 67664 89999999999999 777653 589999999999999999999865
Q ss_pred CCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 003466 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (818)
Q Consensus 531 ~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~ 610 (818)
.++.. +.++. .+..++++|+.++. + ....+.+++.|++
T Consensus 154 ~~~~~------------~~~~~----~~~~~~p~~~~~~~---------------------~-----~~~~~~l~~~l~~ 191 (425)
T PRK09264 154 HKRQG------------AGVPL----NNVTRMPYDGYFGG---------------------D-----VDTLAYLEKLLED 191 (425)
T ss_pred ccccC------------CCCCC----CCeEEeCCCCcccc---------------------c-----hhHHHHHHHHHHh
Confidence 44332 11111 12344454432100 0 0113567777763
Q ss_pred CCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccc
Q 003466 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690 (818)
Q Consensus 611 ~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKg 690 (818)
.. ...+++||||+||| |+++|++++|++||++|+++|++||++||+|||||||||||++|+++++|+.|||+|+||+
T Consensus 192 ~~--~~~~~~aavi~Epv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~ 268 (425)
T PRK09264 192 SS--SGVDLPAAVIVETV-QGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKS 268 (425)
T ss_pred cc--CCCCceEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEeccc
Confidence 20 12357999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-CccccceeecchHHHhhccCChH--------------------HHH------------HHHHHH----HHcCCC-e
Q 003466 691 LTG-GVIPLAATLATNAVFDSFVGDSK--------------------LWD------------LELIQQ----ISSHRT-V 732 (818)
Q Consensus 691 Lgg-Gy~PlsAvl~~~~i~~~l~~~~~--------------------~~~------------~~l~~~----l~~~~~-v 732 (818)
||+ | +|+|++++++++. .+..... ++. +.+.+. ..+++. +
T Consensus 269 l~~~G-~pigav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~ 346 (425)
T PRK09264 269 ISGYG-LPMALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGLG 346 (425)
T ss_pred cCCCc-cceEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 998 7 7999999999874 3322100 111 112222 234664 4
Q ss_pred eEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 733 QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 733 ~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.++||.|+++++++.+. ..+..+++.|+++||++.+.+ ++|||.||+++|++||++++++|+++++++.
T Consensus 347 ~~vrg~Gl~~~i~l~~~--------~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~ 418 (425)
T PRK09264 347 AEVRGRGMMQGIDFGDG--------ELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVL 418 (425)
T ss_pred ecceecccEEEEEecCh--------HHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999644 456788999999999998754 8999999999999999999999999998875
Q ss_pred HhH
Q 003466 810 KVE 812 (818)
Q Consensus 810 ~~~ 812 (818)
+.+
T Consensus 419 ~~~ 421 (425)
T PRK09264 419 AEE 421 (425)
T ss_pred hcc
Confidence 443
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=513.82 Aligned_cols=348 Identities=22% Similarity=0.297 Sum_probs=286.0
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ||||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.+... ...+++..+|+++|++
T Consensus 22 ~~~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~ 93 (408)
T PRK04612 22 RQVVLERGQGS--RVWDDQGR----EYLDLAAGIAVCGLGHN-DPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVT 93 (408)
T ss_pred CCceEEEeeeC--EEEECCCC----EEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHh
Confidence 46788898887 79999999 99999999999999999 99999999999999876542 3568999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
..|. .++|+|++|||||||+|||+| |+|++.+|. .++|.+||+|+++|||+|.+++++++.+.++.
T Consensus 94 ~~~~--~~~v~f~~sGseA~e~AlklA-r~~~~~~g~-----------~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 159 (408)
T PRK04612 94 ASRF--AEKVFLCNSGTEANEAAIKLV-RKWASSQGR-----------PADKRVIVTFRGSFHGRTLAAVTATAQPKYQE 159 (408)
T ss_pred hCCC--CCEEEEcCchHHHHHHHHHHH-HHHHHhhCC-----------CCCCcEEEEECCCcCCccHHHHHhcCCccccc
Confidence 8763 479999999999999999999 777654432 13577899999999999999999998665443
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.| . +. | ++..++ +|||. +.+++.+.
T Consensus 160 ~~-----~---~~---~-----~~~~~~----------------~~~d~------------------~~l~~~~~----- 184 (408)
T PRK04612 160 GY-----E---PL---P-----GGFRYV----------------DFNDV------------------EALEAAMA----- 184 (408)
T ss_pred CC-----C---CC---C-----CCceEc----------------CCCCH------------------HHHHHhhC-----
Confidence 21 0 00 0 011111 14442 45566553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++|||+||+ |+.||+++++++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++||||+||||
T Consensus 185 --~~~~aavi~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G 261 (408)
T PRK04612 185 --GGDVAAVMLEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG 261 (408)
T ss_pred --CCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCC
Confidence 468999999998 99999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... ++.+.+.+...+++.+.+|||.|
T Consensus 262 -~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~G 340 (408)
T PRK04612 262 -FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGRG 340 (408)
T ss_pred -CceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccc
Confidence 799999999999887653211 11122333335578899999999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+|+++++..+. ...+..+.+.|+++||++.+.| +++|+.||+++|++||++++++|++++.++.
T Consensus 341 l~~~i~~~~~~------~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 341 LMLGAVLAPAH------AGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRLALADYV 405 (408)
T ss_pred eEEEEEecCch------hhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999997431 1346778899999999999877 9999999999999999999999999997754
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=515.92 Aligned_cols=352 Identities=23% Similarity=0.290 Sum_probs=276.8
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|+++.++.......+++..+|+|+|++
T Consensus 17 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 89 (412)
T TIGR02407 17 FPTVFEKAKGS--TLWDEDGK----EYIDFFAGAGALNYGHN-NPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNE 89 (412)
T ss_pred CCceEEecccC--EEEeCCCC----EEEEcccchhhccCCCC-CHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHH
Confidence 46688888886 79999999 99999999999999999 9999999999999876654434568999999999999
Q ss_pred cc--CCCCCCcEEE-eCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 455 GV--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 455 ~~--~~~~l~~v~f-~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
.. |.+...+++| +||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++...
T Consensus 90 ~~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~als~~~~~~ 150 (412)
T TIGR02407 90 IILKPRGLDYKVQFPGPTGTNAVESALKLA-RKVTGR------------------SNVVSFTNAFHGMTLGSLSVTGNRF 150 (412)
T ss_pred hccCccCCCceEEEeCCCchHHHHHHHHHH-hhhcCC------------------CeEEEECCCcCCchHHHHHhcCCcc
Confidence 74 3222236666 599999999999999 777653 5899999999999999999998654
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
++..+ + ++. .+..++++|+.. + . ...+.+.+++.+++.
T Consensus 151 ~~~~~--------~----~~~----~~~~~~p~~~~~-------------~---------~----~~~~~~~l~~~~~~~ 188 (412)
T TIGR02407 151 KRQGA--------G----VPL----SNVSRMPYDGYL-------------G---------G----DVDTIAYFEKLLEDS 188 (412)
T ss_pred cccCC--------C----CCC----CCeEECCCCCcc-------------c---------c----chhHHHHHHHHHHhc
Confidence 44321 1 110 122233333211 0 0 011235677777631
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccc
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgL 691 (818)
. .+.+++||||+||| |+++|++++|++||++|+++|++||++||+|||+|||||||++|+++++++.|||+|+||+|
T Consensus 189 ~--~~~~~~aavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~l 265 (412)
T TIGR02407 189 S--SGVDLPAAVILETV-QGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSI 265 (412)
T ss_pred c--CCCCceEEEEeccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhc
Confidence 0 12367999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CccccceeecchHHHhhccCChH-------------------H-HH------------HHHHH----HHHcCC-Cee
Q 003466 692 TG-GVIPLAATLATNAVFDSFVGDSK-------------------L-WD------------LELIQ----QISSHR-TVQ 733 (818)
Q Consensus 692 gg-Gy~PlsAvl~~~~i~~~l~~~~~-------------------~-~~------------~~l~~----~l~~~~-~v~ 733 (818)
|| | +|+|++++++++ +.+..... . +. +.+.+ ..+.++ .+.
T Consensus 266 g~~G-~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~ 343 (412)
T TIGR02407 266 SGYG-LPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIK 343 (412)
T ss_pred cCCc-cceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence 99 8 799999999886 54421110 1 11 11222 224566 578
Q ss_pred EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 734 ~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++||.|+|+++++.+. ..+..+.+.|+++||++.+. +++|||.||+++|++|+++++++|++++++
T Consensus 344 ~vrg~Gl~~~l~l~~~--------~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 344 QVRGRGLMQGIECGDG--------DLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred eeecceeEEEEEecCh--------HHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999654 35678899999999999864 489999999999999999999999999863
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-57 Score=515.65 Aligned_cols=367 Identities=19% Similarity=0.223 Sum_probs=268.9
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHh--hhhcccccCCCCCChhHHHHHHHHH
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT--AARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q--~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
|+++++++|. ||||.||| +||||+||+|+.++||+ ||+|++|+++| ...+.+.. .+.+++..+|+++|.
T Consensus 41 p~~~~~a~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-~p~i~~Ai~~q~~~~~l~~~~--~~~~~~~~~la~~l~ 111 (464)
T TIGR00699 41 LADYEKSRGN--YLVDVDGN----RLLDLYSQISSIPIGYN-NPALLKAAQSPEMATTLINRP--ALGNFPSKDWAKILK 111 (464)
T ss_pred ceEEEecccC--EEEeCCCC----EEEEccCCHhhhcCCCC-CHHHHHHHHHHHHHHhhcccc--cCCcHHHHHHHHHHH
Confidence 6688888886 79999999 99999999999999999 99999999995 44444432 467888899999985
Q ss_pred h----ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccccc--ccCCC-------ccccccceEEEEEcCCCCCCc
Q 003466 454 Q----GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD--FLGKD-------TTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 454 ~----~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~--~~~~~-------~~~~~~r~~II~~~~sYHG~t 520 (818)
+ ++|.+ +++|+|+||||||||+|||+| |.|++..|+..+ +.+++ +.....|.+||+|+++|||+|
T Consensus 112 ~~l~~~~p~~-~~~v~f~~SGsEAvE~AlKlA-r~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t 189 (464)
T TIGR00699 112 EGILKVAPKG-QDQVWTGMSGSDANELAFKAA-FMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRL 189 (464)
T ss_pred HhHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCcc
Confidence 4 56643 689999999999999999999 677653221000 00000 000012458999999999999
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
.+++++++.+.++.. . +|. .+..++++|+ ++++... +. ...+.+...+
T Consensus 190 ~~als~t~~~~~~~~----~---------~~~----~~~~~~p~p~-~~~~~~~-----~~---------~~~~~~~~~~ 237 (464)
T TIGR00699 190 FGSLSTTRSKPIHKL----D---------IPA----FDWPQAPFPS-LKYPLEE-----HV---------KENAKEEQRC 237 (464)
T ss_pred HHHHHhcCCcccccc----C---------CCC----CCceecCCCC-ccccccc-----cc---------ccchhHHHHH
Confidence 999999986432221 0 000 1123344443 1110000 00 0001223345
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
.+.++++|+ .+++++||||+||| |+++|+++||++||++|+++|++||++||+|||||||||||++|+++++||
T Consensus 238 l~~l~~~l~-----~~~~~iAAvI~EPv-~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv 311 (464)
T TIGR00699 238 LEEVEDLIK-----KWHKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNL 311 (464)
T ss_pred HHHHHHHHH-----hcCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCC
Confidence 677888886 34578999999998 999999999999999999999999999999999999999999999999999
Q ss_pred C--CcEEEeccccc-CCccccceeecchHHHh---------hccCChH--------------------------HHHHHH
Q 003466 681 V--PDIACYGKLLT-GGVIPLAATLATNAVFD---------SFVGDSK--------------------------LWDLEL 722 (818)
Q Consensus 681 ~--PDivtlgKgLg-gGy~PlsAvl~~~~i~~---------~l~~~~~--------------------------~~~~~l 722 (818)
+ |||+|+||+|| ||| +++ ++ .++ ++..... ++.+.+
T Consensus 312 ~~~PDi~t~gK~lg~gG~-~~~----~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L 385 (464)
T TIGR00699 312 DDPPDMVTFSKKFQTAGY-FFH----DP-AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGL 385 (464)
T ss_pred CCCCCEEEehhhhccCCc-ccc----ch-hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 7 99999999995 685 322 22 111 1111110 122233
Q ss_pred HHHHHcCC-CeeEEE--eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHH
Q 003466 723 IQQISSHR-TVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLL 798 (818)
Q Consensus 723 ~~~l~~~~-~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~ 798 (818)
.+..++++ .|.+|| |.|+|+++++... ..+..+.+.|+++||++.+.| ++|||.||+++|++|||+++
T Consensus 386 ~~l~~~~~~~i~~vRg~G~Glm~gie~~~~--------~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~ 457 (464)
T TIGR00699 386 EDLQKKYPEFIQNLRGKGRGTFIAWDTPDE--------AKRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFL 457 (464)
T ss_pred HHHHHhCCCceeeecccCeEEEEEEecCCH--------HHHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHH
Confidence 33335688 689999 9999999998532 346789999999999999877 89999999999999999999
Q ss_pred HHHHHHH
Q 003466 799 LKLYQRL 805 (818)
Q Consensus 799 ~~l~~~l 805 (818)
++|++++
T Consensus 458 ~~l~~~~ 464 (464)
T TIGR00699 458 EIISKII 464 (464)
T ss_pred HHHHHhC
Confidence 9998864
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-57 Score=557.94 Aligned_cols=364 Identities=20% Similarity=0.214 Sum_probs=286.5
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. |+||.||| +||||++++ .++||+ ||+|++|+++|++++.+.+ .+.++.+.+|+++|++
T Consensus 567 ~p~~i~~g~G~--~l~D~dG~----~ylD~~~~~--~~lGh~-hp~v~~Ai~~q~~~l~~~~--~~~~~~~~elae~L~~ 635 (972)
T PRK06149 567 DPPQIERGWRH--HLFDMAGR----SYLDMVNNV--TVLGHG-HPRLAAAAARQWSLLNTNS--RFHYAAVAEFSERLAA 635 (972)
T ss_pred CCCeEEEeeee--EEEeCCCC----EEEECCCCc--cccCCC-CHHHHHHHHHHHHhccccc--cccCHHHHHHHHHHHH
Confidence 35678888886 79999999 999999885 379999 9999999999999876543 3567899999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
++|.+ +++|+|+||||||||+|||+| |.|+++ .+||+++++|||+|.+++++++....+.
T Consensus 636 ~~p~~-~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~ga~~~s~~~~~~~ 695 (972)
T PRK06149 636 LAPDG-LDTVFLVNSGSEANDLAIRLA-WAASGR------------------RDVVSVLEAYHGWTVATDAVSTSIADNP 695 (972)
T ss_pred hCCCC-cCEEEEeCCchHHHHHHHHHH-HHhcCC------------------CeEEEEeCCCCCcChhHhhhcCCccccc
Confidence 98754 689999999999999999999 778654 5899999999999999998876432111
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. ++.. .+ .++.+++.|+.++++ |++. .....|.+.+++.++...
T Consensus 696 ~----~~~~------~~-----~~v~~~~~p~~~~~~--------~~~~-----------~~~~~~~~~~~~~l~~~~-- 739 (972)
T PRK06149 696 Q----ALET------RP-----DWVHPVESPNTYRGR--------FRGA-----------DSAADYVRDVVAQLEELD-- 739 (972)
T ss_pred c----ccCC------CC-----CCeEEeCCCcccCCc--------CCCc-----------ccHHHHHHHHHHHHHHHh--
Confidence 0 1000 00 123344555544321 2110 001223334444443211
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCCCCcEEEecccccC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+++++||||+||| ||+||++++|++||++|+++|++||++||+|||||||||||+ +|+++++||+|||+|+||+|||
T Consensus 740 ~~~~~iAavI~Epv-~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~ 818 (972)
T PRK06149 740 ASGRGLAGFICEPV-YGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGN 818 (972)
T ss_pred hcCCceEEEEEccc-ccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccC
Confidence 34678999999998 999999999999999999999999999999999999999998 7799999999999999999999
Q ss_pred CccccceeecchHHHhhccCC----h-H-------------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 694 GVIPLAATLATNAVFDSFVGD----S-K-------------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~----~-~-------------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
| +|+|||++++++++.+... + . ++.+.+.+...+++.+.+|||
T Consensus 819 G-~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG 897 (972)
T PRK06149 819 G-HPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHG 897 (972)
T ss_pred C-eeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 9 7999999999999877531 0 0 122233333456899999999
Q ss_pred eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.|+|++++|..+.....++...+..+++.|+++||++.+.| ++|+|.||+++|++|||+++++|++++++
T Consensus 898 ~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 898 MGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred cceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 99999999976533333445567889999999999999865 89999999999999999999999999865
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-57 Score=513.43 Aligned_cols=363 Identities=20% Similarity=0.275 Sum_probs=273.5
Q ss_pred EEEeecCCeeEEEeC-CcCccccceeecccccccccCCCCCCHHHHH--HHHHhhhhccc--ccCCCCCChhHHHHHHHH
Q 003466 378 VIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELAR--DMGYTAARFGH--VMFPENVYEPALECAELL 452 (818)
Q Consensus 378 vi~~~~G~~~~v~D~-dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~e--Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L 452 (818)
++.+++|. |+||. ||| +|||+++|+|+.++||+ ||+|++ |+++|++++.+ .....+.+++..+|+++|
T Consensus 29 ~i~~a~G~--~l~D~~dG~----~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l 101 (443)
T PRK08297 29 DLERSQGS--YLVDARTGR----RYLDMFTFFASSALGMN-HPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTF 101 (443)
T ss_pred EEEeccCC--EEEECCCCC----EeeecccCHhhhcCCCC-ChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHH
Confidence 46777776 79995 999 99999999999999999 999999 99999998763 223346789999999999
Q ss_pred HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhc----ccccccccCCCccccccceEEEEEcCCCCCCccccccccC
Q 003466 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA 528 (818)
Q Consensus 453 ~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~----~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg 528 (818)
+++.+++.+++|+|+||||||||+|||+| |+|+.+ +|. .+++|.+||+|+++|||+|.+++++++
T Consensus 102 ~~~~~p~~~~~v~f~~SGsEAve~AlKlA-r~~~~~~~~~~g~----------~~~~r~kii~~~~~yHG~t~~als~~~ 170 (443)
T PRK08297 102 ARVLGDPELPHLFFVDGGALAVENALKVA-FDWKSRKNEARGI----------DPALGTKVLHLRGAFHGRSGYTLSLTN 170 (443)
T ss_pred HhhcCCCCCCEEEEeCchHHHHHHHHHHH-HHHhhccccccCC----------CCCCCceEEEECCCcCCcchhhhhhcC
Confidence 99873233689999999999999999999 677532 221 002478999999999999999999997
Q ss_pred CCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHH
Q 003466 529 PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608 (818)
Q Consensus 529 ~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L 608 (818)
...++.. ++. ..+.+ +++.|.... ++++. ...+...+...+.+.+++.+
T Consensus 171 ~~~~~~~----~~~----~~~~~---------~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~~~~~i 219 (443)
T PRK08297 171 TDPRKTA----RFP----KFDWP---------RIDNPKLRF---------PLPGE-----DLEEVEALEAEALAQARAAF 219 (443)
T ss_pred Ccccccc----cCC----CCCcc---------ccCCCCCCC---------CCccc-----ccchhhHHHHHHHHHHHHHH
Confidence 5432221 110 00000 111111100 00000 00001122333456777888
Q ss_pred hcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec
Q 003466 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG 688 (818)
Q Consensus 609 ~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg 688 (818)
. .+++++||||+||| |++||+++||++||++|+++|++||++||+|||+|||||||++|+++++|++|||+|+|
T Consensus 220 ~-----~~~~~iAavI~EPi-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g 293 (443)
T PRK08297 220 E-----RHPHDIACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFG 293 (443)
T ss_pred H-----hCCCcEEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEec
Confidence 6 35789999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccccceeecchHHHhh----ccC-----Ch----H---------------------------HHHHHHHHHHHc
Q 003466 689 KLLTGGVIPLAATLATNAVFDS----FVG-----DS----K---------------------------LWDLELIQQISS 728 (818)
Q Consensus 689 KgLggGy~PlsAvl~~~~i~~~----l~~-----~~----~---------------------------~~~~~l~~~l~~ 728 (818)
|+| |++++++++++.+. +.. .. . .+.+.+.+..++
T Consensus 294 K~l-----~~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~ 368 (443)
T PRK08297 294 KKT-----QVCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAE 368 (443)
T ss_pred ccc-----cccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 45567777665432 210 00 0 111223333355
Q ss_pred CCCee-EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 729 HRTVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 729 ~~~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
++.+. +|||.|+|+++++.+. ..+..+++.|+++||++.+.+ +.+||+||++||++|||+++++|+++++
T Consensus 369 ~~~~~~~vrg~G~~~~i~~~~~--------~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~ 440 (443)
T PRK08297 369 FPAVVSNVRGRGLMCAFDLPTT--------ADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALP 440 (443)
T ss_pred CCCcceeeeccceEEEEEecCH--------HHHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 77665 9999999999999643 346678999999999999876 8999999999999999999999999987
Q ss_pred HH
Q 003466 807 EF 808 (818)
Q Consensus 807 ~l 808 (818)
++
T Consensus 441 ~~ 442 (443)
T PRK08297 441 EV 442 (443)
T ss_pred hh
Confidence 65
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-57 Score=512.60 Aligned_cols=348 Identities=18% Similarity=0.273 Sum_probs=275.4
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.+. ++.+++..+|+++|++
T Consensus 35 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~l~~ 104 (428)
T PRK12389 35 APVVMERGKGA--YFYDVDGN----KYIDYLAAYGPIITGHA-HPHITKAITEAAENGVLY---GTPTELEIEFAKMLKE 104 (428)
T ss_pred CCeEEEeccCC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCcc---CCCCHHHHHHHHHHHH
Confidence 47788898886 79999999 99999999999999999 999999999999987543 3578999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.+|. +++|+|++|||||||+|||+| |.|++| .+||+|+++|||+|.+++++++...++.
T Consensus 105 ~~p~--~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 163 (428)
T PRK12389 105 AIPS--LEKVRFVNSGTEAVMTTIRVA-RAYTGR------------------TKIIKFAGCYHGHSDLVLVAAGSGPSTL 163 (428)
T ss_pred hCCC--CcEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCChHHHHHhcCCccccc
Confidence 8873 689999999999999999999 788654 5899999999999999999987543221
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. .|...+ +..+ ..|..++ ++|||. +.+++.+++
T Consensus 164 ~--~~~~~~----~~~~-----------~~~~~~~--------~~~~d~------------------~~l~~~l~~---- 196 (428)
T PRK12389 164 G--TPDSAG----VPKS-----------IAQEVIT--------VPFNDI------------------EALKEALDK---- 196 (428)
T ss_pred C--CCCCCC----CCCc-----------ccCceEE--------cCCCCH------------------HHHHHHHHh----
Confidence 0 011000 0000 0011110 225543 556677763
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++||||+||| |+++|+++||++||++|+++|++||++||+||||||| |||.+|+++++||+|||+|+||+||||
T Consensus 197 -~~~~vaavi~EPv-~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG 273 (428)
T PRK12389 197 -WGDEVAAVLVEPI-VGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGG 273 (428)
T ss_pred -cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCC
Confidence 3578999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCCh---H-----------------------------------HHHHHHHHHHHcCCCeeEE-
Q 003466 695 VIPLAATLATNAVFDSFVGDS---K-----------------------------------LWDLELIQQISSHRTVQRV- 735 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~---~-----------------------------------~~~~~l~~~l~~~~~v~~v- 735 (818)
+|+||+++++++++.+.... . ++.+.+.+..++++.+.++
T Consensus 274 -~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~ 352 (428)
T PRK12389 274 -LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITIN 352 (428)
T ss_pred -CceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 79999999999999874211 0 1112233333457877777
Q ss_pred EeeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
|+.| ++++++..+... ..++...+..+.+.|+++||++.+.+ +. +.||++||++||+++++++++++++
T Consensus 353 r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~--~~~~l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 353 RLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEA--WFLTTAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred ecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCC--eeecCCCCHHHHHHHHHHHHHHHHh
Confidence 7777 889999754211 01133456788999999999998864 33 4689999999999999999999865
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=504.85 Aligned_cols=344 Identities=24% Similarity=0.301 Sum_probs=282.3
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||| +||||+||+|+++|||+ ||+|++|+++|++++.+... .+.++++.+|+++|++
T Consensus 17 ~~~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~L~~ 88 (397)
T TIGR03246 17 APFIPVRGEGS--RVWDQQGK----EYIDFAGGIAVNALGHA-HPELVKALIEQADKLWHIGN-GYTNEPVLRLAKKLVD 88 (397)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEECCcCHhhccCCCC-CHHHHHHHHHHHHhcccccC-ccCCHHHHHHHHHHHh
Confidence 46788898887 79999999 99999999999999999 99999999999998654432 4568899999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+.+ .++++|++|||||||+|||+| |.|+.+++. ++|.+||+++++|||+|.+++++++.+.++.
T Consensus 89 ~~~---~~~~~f~~SGseA~e~Alk~a-r~~~~~~~~------------~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~ 152 (397)
T TIGR03246 89 ATF---ADKVFFCNSGAEANEAALKLA-RRYALDKHG------------ADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQ 152 (397)
T ss_pred hCC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCccHHHHHhcCCccccc
Confidence 886 379999999999999999999 777654322 4678999999999999999999998654443
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.| .+. ++ +..+ ++|||. +.+++.+.
T Consensus 153 ~~--------~~~--~~------~~~~----------------~~~~d~------------------~~l~~~l~----- 177 (397)
T TIGR03246 153 GF--------APL--PG------GIKH----------------APYNDL------------------AAAKALIS----- 177 (397)
T ss_pred CC--------CCC--CC------ceEE----------------eCCCCH------------------HHHHHHhc-----
Confidence 21 000 01 1111 125653 55666663
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
++++|||+||+ ++++|+++||++||++|+++|++||++||+|||||||||+|++|+++++|+.||++|+||+||||
T Consensus 178 ---~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG 253 (397)
T TIGR03246 178 ---DKTCAVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGG 253 (397)
T ss_pred ---cCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEeehhhhCC
Confidence 36999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHH----HcCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQI----SSHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l----~~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... .+ .+.+.+.| .+++.+.++||.|
T Consensus 254 -~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G 332 (397)
T TIGR03246 254 -FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKG 332 (397)
T ss_pred -cceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCc
Confidence 799999999999988753211 00 01122222 3466788999999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+++++++.+.. ...+..+++.|+++|+++.+.| +.+|+.||+++|++||++++++|++++.++
T Consensus 333 ~~~~i~~~~~~------~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 333 LLIGAVLTEAY------QGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred eEEEEEEcCch------hhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999997531 1346789999999999998866 899999999999999999999999988653
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=503.68 Aligned_cols=342 Identities=23% Similarity=0.274 Sum_probs=269.6
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++.+++|. ++||.||| +||||+||+|++++||+ ||+|++|+++|++++.+... ...+++..+|+++|.+
T Consensus 18 ~~~~~~~~~G~--~~~d~dG~----~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~la~~l~~ 89 (395)
T PRK03715 18 PDIVFTHGKGS--WLYDHNGK----RYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLINPSP-AFYNEPMAKLAGLLTQ 89 (395)
T ss_pred CCceEEeeecC--EEEECCCC----EEEECCcChhhccCCCC-CHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHhh
Confidence 45688888887 79999999 99999999999999999 99999999999999876543 4568999999999998
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
..+ .++++|++||+||||+|+|+| |.|+++. . ++|.+||+++++|||+|.+++++++.+.++.
T Consensus 90 ~~~---~~~v~f~~SGseA~e~Aik~a-r~~~~~~-~------------~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~ 152 (395)
T PRK03715 90 HSC---FDKVFFANSGAEANEGAIKLA-RKWGRKH-K------------NGAYEIITFDHSFHGRTLATMSASGKPGWDT 152 (395)
T ss_pred ccC---CCEEEEeCCcHHHHHHHHHHH-HHHhhcc-C------------CCCcEEEEECCCcCCChHHHHhhcCCccccc
Confidence 754 579999999999999999999 6665432 1 4578999999999999999999998654433
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. +.+ . .+ +..+ .+|||. +.+++.+.
T Consensus 153 ~-----~~~---~--~~------~~~~----------------~~~~d~------------------~~l~~~l~----- 177 (395)
T PRK03715 153 I-----FAP---Q--VP------GFPK----------------AELNDI------------------ASVEKLIT----- 177 (395)
T ss_pred C-----CCC---C--CC------Ccee----------------eCCchH------------------HHHHHHcC-----
Confidence 2 000 0 00 0000 113432 45665553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
++++|||+||+ |++||+++||++|+++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+||||
T Consensus 178 ---~~~aavi~Epv-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G 253 (395)
T PRK03715 178 ---DKTVAVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGG 253 (395)
T ss_pred ---CCceEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhhhhCC
Confidence 46899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCC---h----H-----------HHH------------HHHHHHH----HcCCCeeEEEeeee
Q 003466 695 VIPLAATLATNAVFDSFVGD---S----K-----------LWD------------LELIQQI----SSHRTVQRVVALGT 740 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~---~----~-----------~~~------------~~l~~~l----~~~~~v~~vrg~Gl 740 (818)
+|+|+++++++++...... . . +++ +.+.+.+ .+++ +.++||.|+
T Consensus 254 -~p~~av~~~~~i~~~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-i~~vrG~Gl 331 (395)
T PRK03715 254 -VPLAALLAKAEVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERG-LEGERGEGL 331 (395)
T ss_pred -cceEEEEEccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCC-cCeEEccee
Confidence 7999999999987432111 0 0 111 1122223 3444 778999999
Q ss_pred EEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 741 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 741 ~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|+++++.++. .......+..++++||++.+. ++++||.||+++|++|||+++++|+++++++
T Consensus 332 m~~i~l~~~~------~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 332 LRALLLGKDI------GPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred EEEEEecCch------HHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 9999997531 011223333444459999754 5899999999999999999999999998764
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=489.27 Aligned_cols=375 Identities=21% Similarity=0.262 Sum_probs=294.9
Q ss_pred hccchhhhcCcc----ccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHH
Q 003466 350 LCDMPKRAGELF----WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDM 425 (818)
Q Consensus 350 ~~~l~~~~~~~~----~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi 425 (818)
+.++.+++.+++ +.|.+..+.+. ..|+++.+++|. ++||+||| +|||++.+|+...+||+ ||.|++|+
T Consensus 7 S~~l~~~A~~~~pGGvnspvra~~~v~-~~P~fi~~g~Ga--~l~DvDGn----~YIDy~~~~Gp~ilGH~-~p~V~~Av 78 (432)
T COG0001 7 SEALFERAKKVIPGGVNSPVRAFKSVG-GYPIFIERGKGA--YLTDVDGN----EYIDYVLGWGPLILGHA-HPAVVEAV 78 (432)
T ss_pred hHHHHHHHhhhCCCCCCccccccCCCC-CCCeeEEeccCC--eEEeCCCC----EeeehhccCcccccCCC-CHHHHHHH
Confidence 344555555544 45655554442 478999999997 79999999 99999999999999999 99999999
Q ss_pred HHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCcccccc
Q 003466 426 GYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI 505 (818)
Q Consensus 426 ~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~ 505 (818)
++|+++...+ +..++...++||.|++.+|. .++|.|+|||+||++.|||+| |.||+|
T Consensus 79 ~~~l~~G~~f---g~Pte~Ei~~Aell~~~~p~--~e~vrfvnSGTEAtmsAiRlA-Ra~TgR----------------- 135 (432)
T COG0001 79 QEQLERGLSF---GAPTELEVELAELLIERVPS--IEKVRFVNSGTEATMSAIRLA-RAYTGR----------------- 135 (432)
T ss_pred HHHHHhcCCC---CCCCHHHHHHHHHHHHhcCc--ccEEEEecchhHHHHHHHHHH-HHhhCC-----------------
Confidence 9999986543 45789999999999999985 689999999999999999999 999876
Q ss_pred ceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccc
Q 003466 506 ELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585 (818)
Q Consensus 506 r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~ 585 (818)
.+||.|+|+|||+....+--.|...-... .|. .|. +|......+ --++|||+
T Consensus 136 -~kIikF~G~YHG~~D~~lv~agsg~~t~g--~p~---------s~G-----------vp~~~a~~t---i~~~yND~-- 187 (432)
T COG0001 136 -DKIIKFEGCYHGHSDSLLVKAGSGAATLG--SPS---------SPG-----------VPADVAKHT---LVLPYNDL-- 187 (432)
T ss_pred -CeEEEEcCCCCCCccHHHhhcCcCcccCC--CCC---------CCC-----------CChhhhccE---EEecCCCH--
Confidence 59999999999999777654432111100 011 111 111111100 12458985
Q ss_pred hhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC
Q 003466 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665 (818)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG 665 (818)
+.++++++ ..+++|||||+||| +++.|+++|+++|+++||+||++||++||+|||+||
T Consensus 188 ----------------~al~~~~~-----~~g~~IAaVIvEPv-~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTG 245 (432)
T COG0001 188 ----------------EALEEAFE-----EYGDDIAAVIVEPV-AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG 245 (432)
T ss_pred ----------------HHHHHHHH-----HcCCcEEEEEeccc-cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhh
Confidence 67888887 45789999999998 999999999999999999999999999999999999
Q ss_pred cccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH-----------------------------
Q 003466 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK----------------------------- 716 (818)
Q Consensus 666 fGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~----------------------------- 716 (818)
| |.+..+++++|||+||+.||||.+||| +|+||+.+++++|+.+....+
T Consensus 246 F-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~ 323 (432)
T COG0001 246 F-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEG 323 (432)
T ss_pred c-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhccc
Confidence 9 999999999999999999999999999 799999999999997765433
Q ss_pred ----------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC------chHHHHHHHHHHHhCCceEeecCCE
Q 003466 717 ----------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY------GSLYAASLLKKLREDGVYMRPLGNV 780 (818)
Q Consensus 717 ----------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~------~~~~a~~~~~~l~e~Gvlv~p~g~~ 780 (818)
.+.+.+.+.+.++.....|.+.|.|+.+.|...+ ...+ +.+....+.+.|+++||++.|+.-.
T Consensus 324 ~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~-~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~e 402 (432)
T COG0001 324 VYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEG-VRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFE 402 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCC-CCCHHHHHhhchHHHHHHHHHHHhCCcccCCcccc
Confidence 1223345556677777889999999999998753 2222 2223445666999999999998622
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 781 IYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 781 ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
-.| .+..||++|||+++++++++++++.
T Consensus 403 a~f-lS~ahte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 403 AGF-LSTAHTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred cee-eecccCHHHHHHHHHHHHHHHHHhh
Confidence 223 3445999999999999999988764
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=501.02 Aligned_cols=343 Identities=23% Similarity=0.314 Sum_probs=279.5
Q ss_pred EeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC
Q 003466 380 DSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459 (818)
Q Consensus 380 ~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~ 459 (818)
++++|. |+||.||| +||||++|+|+.++||+ ||+|.+|+++|++++.+... .+.+++..+|+++|++..+
T Consensus 2 ~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~~-- 71 (382)
T PLN00144 2 VSGKGC--KLYDVEGK----EYLDMAAGIAVNALGHG-DPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVASSF-- 71 (382)
T ss_pred eeeecc--EEEeCCCC----EEEECCcCHHhccCCCC-CHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHhcCC--
Confidence 456665 79999999 99999999999999999 99999999999999877643 3458999999999999875
Q ss_pred CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCC
Q 003466 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (818)
Q Consensus 460 ~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p 539 (818)
.++|+|++|||||||+|||+| |.|++++|... +.....+|.+||+|+++|||+|.+++++++...++..|
T Consensus 72 -~~~v~f~~sGseA~e~AlklA-r~~~~~~~~~~-----~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~--- 141 (382)
T PLN00144 72 -ADRVFFCNSGTEANEAAIKFA-RKYQRVRAPDK-----KDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPF--- 141 (382)
T ss_pred -CCeEEEeCCcHHHHHHHHHHH-HHHHhccCCCC-----ccccccccceEEEECCCcccccHHHHhcCCCccccccC---
Confidence 479999999999999999999 88887654300 00000126799999999999999999999865444321
Q ss_pred cccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 003466 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (818)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~ 619 (818)
.+. .| +..++ +|||+ +.+++.++ .++
T Consensus 142 -----~~~--~~------~~~~~----------------~~~d~------------------~~l~~~~~-------~~~ 167 (382)
T PLN00144 142 -----EPL--MP------GVTFV----------------EYGNL------------------EAARKLIQ-------KGK 167 (382)
T ss_pred -----CCC--CC------CeEEe----------------CCCCH------------------HHHHHhcC-------CCC
Confidence 000 01 11121 25553 45666653 368
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccc
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLA 699 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~Pls 699 (818)
++|||+||+ |+.||+.+++.+|+++|+++|++||++||+|||+|||||+|++|+++++++.|||+||||+|+|| +|+|
T Consensus 168 ~aavi~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig 245 (382)
T PLN00144 168 TAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIG 245 (382)
T ss_pred eEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCC-cceE
Confidence 999999998 99999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred eeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEE
Q 003466 700 ATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVALGTLCAI 744 (818)
Q Consensus 700 Avl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~i 744 (818)
++++++++++.+..... .+.+.+.+.+.++|.+.+|||.|+++++
T Consensus 246 ~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg~G~~~~l 325 (382)
T PLN00144 246 AVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGI 325 (382)
T ss_pred EEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCceEEEE
Confidence 99999999988753211 1112233445677888999999999999
Q ss_pred EEecCcccCCCchHHHHHHHHHHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+|... +..+++.|+++||++.+.+ +.||+.||+++|++||++++++|++++.++
T Consensus 326 ~l~~~----------~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 326 QLDVP----------AGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred EecCc----------cHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 99322 3568899999999999864 899999999999999999999999999764
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=503.73 Aligned_cols=383 Identities=17% Similarity=0.148 Sum_probs=295.6
Q ss_pred HHHHHHHHHHHHHhhccchhhhcCccccc--cCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccC
Q 003466 336 KNIMLLAYSERIQRLCDMPKRAGELFWWP--FTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGP 413 (818)
Q Consensus 336 ~~~l~~~~~~r~~~~~~l~~~~~~~~~~p--~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~l 413 (818)
.+.+...|.++..++..+.+++++++..- ++....++...|+++++++|. ++||.||| +|||+.+|+|+.++
T Consensus 16 ~~~~~~~~~~~~~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~--~v~D~DG~----~yiD~~~g~g~~~l 89 (453)
T PRK07046 16 LARERARFLEAHPRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGA--RFTDVDGH----RYDDFCLGDTGAMF 89 (453)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeC--EEEeCCCC----EEEEeccccccccc
Confidence 34455566777788888889988877553 333333323468889999887 79999999 99999999999999
Q ss_pred CCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccc
Q 003466 414 DATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (818)
Q Consensus 414 Gh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~ 493 (818)
||+ ||+|.+|+++|+++..+. +..++...+|||+|++.++ .++|+|+|||+||||.|||+| |.||+|
T Consensus 90 Gh~-~p~i~~Av~~q~~~~~~~---~~~~~~~~~lAe~l~~~~~---~~~v~F~nSGtEA~e~AlrlA-R~~TGr----- 156 (453)
T PRK07046 90 GHS-PAPVARALAEQARRGLTT---MLPSEDAAWVGEELARRFG---LPYWQVATTATDANRFVLRWA-RAVTGR----- 156 (453)
T ss_pred CCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHHH-HHhhCC-----
Confidence 999 999999999999986543 3568999999999999885 589999999999999999999 888764
Q ss_pred cccCCCccccccceEEEEEcCCCCCCcccccccc--CCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhh
Q 003466 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (818)
Q Consensus 494 ~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~t--g~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (818)
.+||.|+++|||++.+++... +...++. .+.+ .|. ...+.. ..
T Consensus 157 -------------~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~-----~~~g------~~~-~~~~~~--~~-------- 201 (453)
T PRK07046 157 -------------PKILVFNGCYHGTVDDVFVDLVDGRPVQRP-----GLLG------QVH-DLTATT--RV-------- 201 (453)
T ss_pred -------------CEEEEECCCCCCCcHHhHhhccCCCCCCCC-----CCCC------CCc-cccCce--Ee--------
Confidence 589999999999987666432 2111111 0000 000 000000 11
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~ 651 (818)
++|||. +.+++.+. .+++||||+||| |+++|+++|+++||++||++|+
T Consensus 202 ------~~~nd~------------------~~l~~~l~-------~~~vAavi~EPi-~g~~G~~~p~~~fl~~lr~lc~ 249 (453)
T PRK07046 202 ------VEFNDL------------------AALEAALA-------DGDVAAVLAEPA-MTNIGMVLPEPGFHEALRELTR 249 (453)
T ss_pred ------eCCCCH------------------HHHHHHhC-------CCCeEEEEECCC-CCCCCCcCCCHHHHHHHHHHHH
Confidence 236663 55666663 368999999998 9999999999999999999999
Q ss_pred hcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC-------Ch--H------
Q 003466 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG-------DS--K------ 716 (818)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~-------~~--~------ 716 (818)
+||++||+|||+| | |+|.++.++++||+|||+|+||+|||| +|+||+++++++++.+.. .. .
T Consensus 250 ~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~g 326 (453)
T PRK07046 250 RYGTLLVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSA 326 (453)
T ss_pred HhCCEEEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcc
Confidence 9999999999999 6 677777788899999999999999999 799999999999998742 00 0
Q ss_pred -----------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC------CCchHHHH
Q 003466 717 -----------------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA------GYGSLYAA 761 (818)
Q Consensus 717 -----------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~------~~~~~~a~ 761 (818)
.+.+.+.+.+.+++.+..|+|.|+++.+++..+.... ..+.....
T Consensus 327 npl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 406 (453)
T PRK07046 327 NALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEA 406 (453)
T ss_pred cHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHH
Confidence 1122333334567888899999999999986432110 11234566
Q ss_pred HHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.++..|+++||++.+.++.++++|+ ||++|||+++++++++++++.
T Consensus 407 ~~~~~~~~~Gv~~~~~~~~~~~~p~--~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 407 ALHLYLLNRGVLITPFHNMMLVCPA--TTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred HHHHHHHHCCCEEecccCcEEEeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence 7888999999999987777888886 999999999999999998764
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=503.26 Aligned_cols=345 Identities=18% Similarity=0.239 Sum_probs=266.2
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||| +|||+++|+|+.++||+ ||+|.+|+++|++++.+. ...+++..+|||+|++
T Consensus 81 ~p~~~~~a~G~--~l~D~dG~----~yiD~~~g~g~~~lGh~-~p~v~~av~~ql~~~~~~---~~~~~~~~~lAe~l~~ 150 (474)
T PLN02482 81 QPIVFDRVKGS--YAWDVDGN----EYIDYVGSWGPAIIGHA-DDEVLAALAETMKKGTSF---GAPCLLENVLAEMVID 150 (474)
T ss_pred CCeeEEEeeeC--EEEECCCC----EEEEecccccccccCCC-CHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHH
Confidence 47889998887 79999999 99999999999999999 999999999999987643 3568999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc--cccCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM--EAQAPSPY 532 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al--s~tg~~~~ 532 (818)
.+|. +++|+|+|||+||||.|||+| |.||+| .+||.|+++|||++...+ +.++....
T Consensus 151 ~~p~--~~~v~f~~SGsEA~e~AlklA-R~~tgr------------------~~Ii~~~g~YHG~~~~~~~~~~~~~~~~ 209 (474)
T PLN02482 151 AVPS--VEMVRFVNSGTEACMGVLRLA-RAYTGR------------------EKIIKFEGCYHGHADSFLVKAGSGVATL 209 (474)
T ss_pred hCCC--CCEEEEeCChHHHHHHHHHHH-HHhcCC------------------CEEEEECCccCCCcchhhhhcCCCcccc
Confidence 8874 689999999999999999999 888764 589999999999875433 33322111
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
.. ++..+ . |. ...++.+ -++|||+ +.+++.|+
T Consensus 210 ~~----~~~~g----~--~~---------~~~~~~~--------~~~~nd~------------------~~l~~~l~--- 241 (474)
T PLN02482 210 GL----PDSPG----V--PK---------AATSATL--------TAPYNDL------------------EAVKKLFE--- 241 (474)
T ss_pred CC----CCCCC----C--CC---------CCCCCeE--------EecCCCh------------------HHHHHHHH---
Confidence 10 11000 0 00 0001101 0236664 56777776
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg 692 (818)
.+++++||||+||| |+++|+++|+++||++|+++|++||++||+||||||| |+|.+|+++++|++|||+||||+||
T Consensus 242 --~~~~~iAavI~Epv-~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lg 317 (474)
T PLN02482 242 --ANKGEIAAVILEPV-VGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIG 317 (474)
T ss_pred --hCCCceEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhh
Confidence 34678999999998 9999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCccccceeecchHHHhhccCChH--------------------------------------HHHHHHHHHHHcC--CCe
Q 003466 693 GGVIPLAATLATNAVFDSFVGDSK--------------------------------------LWDLELIQQISSH--RTV 732 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~~--------------------------------------~~~~~l~~~l~~~--~~v 732 (818)
|| +|+||+++++++++.+..... .+.+.+.+...++ +.+
T Consensus 318 gG-~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~ 396 (474)
T PLN02482 318 GG-LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMC 396 (474)
T ss_pred CC-CceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99 799999999999998752110 1112233333443 332
Q ss_pred -eEEEeeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 733 -QRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 733 -~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.++++ |++++|..+... ...+...+..+.+.|+++||++.+.+...+ .||++||++|||+++++++++++
T Consensus 397 ~~~v~g---~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~~-~psl~ht~~dId~~l~al~~~l~ 472 (474)
T PLN02482 397 GGYISG---MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEAG-FTSLAHTEEDIDFTIAAAERVLA 472 (474)
T ss_pred Ecccce---EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCCC-cCCCCCCHHHHHHHHHHHHHHHH
Confidence 34444 889999764210 012334567789999999999988643222 49999999999999999999987
Q ss_pred H
Q 003466 807 E 807 (818)
Q Consensus 807 ~ 807 (818)
+
T Consensus 473 ~ 473 (474)
T PLN02482 473 R 473 (474)
T ss_pred h
Confidence 5
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-55 Score=493.94 Aligned_cols=346 Identities=24% Similarity=0.293 Sum_probs=282.5
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||+ +||||+||+|++++||+ ||+|++|+++|++++.+... .+.++++.+|+++|++
T Consensus 21 ~~~~~~~~~G~--~~~d~dG~----~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 92 (406)
T PRK12381 21 APFIPVRGEGS--RLWDQQGK----EYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTGN-GYTNEPVLRLAKKLID 92 (406)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcccccC-ccCCHHHHHHHHHHHh
Confidence 35688898887 79999999 99999999999999999 99999999999998765432 4568889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+.+ .++|+|++||+||||+|+|+| |.|+.+.+. ++|.+||+++++|||+|.+++++++.+.++.
T Consensus 93 ~~~---~~~v~~~~sGseA~e~Alk~a-r~~~~~~~~------------~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 156 (406)
T PRK12381 93 ATF---ADRVFFCNSGAEANEAALKLA-RKYAHDRYG------------SHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQ 156 (406)
T ss_pred hCC---CCeEEEcCCcHHHHHHHHHHH-HHHHhhcCC------------CCCCeEEEECCCcCCcchhHHhhcCCccccc
Confidence 875 479999999999999999999 777644332 4578999999999999999999998654443
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. .++. ++ +..+ ++|||. +.+++.+.
T Consensus 157 ~--------~~~~--~~------~~~~----------------~~~~d~------------------~~l~~~l~----- 181 (406)
T PRK12381 157 D--------FAPL--PP------DIRH----------------AAYNDL------------------NSASALID----- 181 (406)
T ss_pred C--------CCCC--CC------CeeE----------------eCCCCH------------------HHHHHhcc-----
Confidence 2 0100 01 1111 125553 45666553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
++++|||+||+ +++||++++|++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++||||+||||
T Consensus 182 ---~~~aaviiEPv-~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG 257 (406)
T PRK12381 182 ---DQTCAVIVEPI-QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG 257 (406)
T ss_pred ---CCeeEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhhCC
Confidence 47999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHH----HcCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQI----SSHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l----~~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... .+ .+.+.+.+ .+++.+.++||.|
T Consensus 258 -~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G 336 (406)
T PRK12381 258 -FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLG 336 (406)
T ss_pred -CceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCe
Confidence 799999999999987753211 01 01122222 3456678999999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
+|+++++..+. ...+..+.+.|+++||++.+.+ +.+||.||+++|++||++++++|+++++++..
T Consensus 337 l~~~~~l~~~~------~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~ 402 (406)
T PRK12381 337 LLIGCVLNAEY------AGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFARACERFVS 402 (406)
T ss_pred EEEEEEecCch------hhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999997531 1246678899999999998766 79999999999999999999999999987653
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=492.02 Aligned_cols=304 Identities=28% Similarity=0.411 Sum_probs=243.1
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccC
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~ 457 (818)
+|++++|. |+||.||+ +||||++++|++++||+ ||+|.+|+++|++++.+.++....++...+|+++|.+.+|
T Consensus 1 ~i~~a~G~--~l~d~dG~----~~lD~~~~~~~~~lGh~-~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p 73 (339)
T PF00202_consen 1 FIERAEGA--YLWDVDGR----EYLDFMSGYGSVNLGHN-HPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFP 73 (339)
T ss_dssp EEEEEEBT--EEEETTSE----EEEESSHHHHTTTT-BT--HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSS
T ss_pred CeEEeecC--EEEECCCC----EEEECCCCccceecCCC-ccccchhHHHHhhhcccccccceeccchhhhhhhhhhccc
Confidence 47788887 79999999 99999999999999999 9999999999999998877667889999999999999997
Q ss_pred CCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCC
Q 003466 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (818)
Q Consensus 458 ~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~ 537 (818)
.+ +++|+|++||+||||.|||+| |+|.+..+. ++|.+||+|+++|||+|.+++++++.+.++..+
T Consensus 74 ~~-~~~v~f~~sGseAve~Alkla-~~~~~~~~~------------~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~- 138 (339)
T PF00202_consen 74 GG-LDRVFFANSGSEAVEAALKLA-RQYHNKRAY------------TGRRKILAFEGSYHGRTLGALSLTGNPPYRKGF- 138 (339)
T ss_dssp TT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTHH------------HTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTT-
T ss_pred cc-cceeeeccCchHHHHHHHHHh-hcccccccc------------cCCceEEEeeeeeeccCcccccccCCccccccc-
Confidence 54 789999999999999999999 544443332 668899999999999999999998876665531
Q ss_pred CCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003466 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (818)
Q Consensus 538 ~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~ 617 (818)
.+++ .+..+++.|+... +.....+.+.+++.+.+ .++
T Consensus 139 ~~~~---------------~~~~~~p~~~~~~------------------------~~~~~~~~~~~~~~~~~----~~~ 175 (339)
T PF00202_consen 139 GPLY---------------PGVVFVPFPDPAA------------------------DEEEQACLNALEELIAA----LNA 175 (339)
T ss_dssp CSSS---------------TTEEEEETTCHHH------------------------HHHHHHHHHHHHHHHHH----HHG
T ss_pred cccc---------------cccccccCCccch------------------------hhhHHHHHHHHHHHHHh----hcC
Confidence 1111 1223445443321 01112223344444433 346
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~P 697 (818)
++|||||+||| |+++|++++|++||++|+++|++||++||+|||+|||||||++|+++++|++|||+|+||+|+|| +|
T Consensus 176 ~~iaavivEPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~p 253 (339)
T PF00202_consen 176 DEIAAVIVEPI-QGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-LP 253 (339)
T ss_dssp GGEEEEEEESS-BTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-SS
T ss_pred CcEEEEEEecc-ccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhh-hh
Confidence 79999999997 99999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred cceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEeeeeEE
Q 003466 698 LAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVALGTLC 742 (818)
Q Consensus 698 lsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~ 742 (818)
+||+++++++++.+..... .+.+.+.+..++++.+.+|||.|+|+
T Consensus 254 ~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~ 333 (339)
T PF00202_consen 254 ISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLRELAARYPLIGEVRGIGLMI 333 (339)
T ss_dssp EEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEETTEE
T ss_pred cccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeCeEE
Confidence 9999999999998854221 22233443335569999999999999
Q ss_pred EEEEec
Q 003466 743 AIELQA 748 (818)
Q Consensus 743 ~iel~~ 748 (818)
++++++
T Consensus 334 ~ie~~k 339 (339)
T PF00202_consen 334 GIELVK 339 (339)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 999963
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-55 Score=496.61 Aligned_cols=357 Identities=18% Similarity=0.215 Sum_probs=268.7
Q ss_pred EEeecCCeeEEEeC-CcCccccceeecccccccccCCCCCCHHHH--HHHHHhhhhcccc--cCCCCCChhHHHHHHHHH
Q 003466 379 IDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELA--RDMGYTAARFGHV--MFPENVYEPALECAELLL 453 (818)
Q Consensus 379 i~~~~G~~~~v~D~-dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~--eAi~~q~~~~~~~--~~~~~~~~~~~eLae~L~ 453 (818)
+++++|. |+||. ||| +||||++|+|+.++||+ ||+|+ +|+++|++++.+. +.....+++..+++++|+
T Consensus 23 ~~~a~G~--~l~D~~dG~----~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (431)
T TIGR03251 23 LDRSRGS--VLVDARDGR----RYLDMFSFFASMALGMN-HPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFA 95 (431)
T ss_pred EEeccCC--EEEECCCCC----ChhhcccChhhcCCCCC-ChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHH
Confidence 5777776 79996 999 99999999999999999 99999 9999999987532 223466889999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhc----ccccccccCCCccccccceEEEEEcCCCCCCccccccccCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~----~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~ 529 (818)
+.++.+.+++|+|+||||||||+|||+| |+||++ +|. ..++|.+||+|+++|||+|.+++++++.
T Consensus 96 ~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~t~~~~~~~g~----------~~~~~~~ii~~~~~yHG~t~~als~~~~ 164 (431)
T TIGR03251 96 RVLGDPALPHLFFIEGGALAVENALKTA-FDWKSRHNQARGI----------PAALGTQVLHLRQAFHGRSGYTLSLTNT 164 (431)
T ss_pred HhcCCCCcCEEEEeCCcHHHHHHHHHHH-HHHhhcchhhcCC----------CCCCCceEEEECCccCCcchhhhhccCC
Confidence 9863333789999999999999999999 778754 232 0012678999999999999999999985
Q ss_pred CCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHh
Q 003466 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLL 609 (818)
Q Consensus 530 ~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~ 609 (818)
..++..+ .|. ++. .+++.|+.. + +++..+ . .+...+...+.+.+++.++
T Consensus 165 ~~~~~~~-~~~-------~~~---------~~~~~p~~~-~--------~~~~~~--~---~~~~~~~~~~l~~~~~~~~ 213 (431)
T TIGR03251 165 DPRKTAR-FPK-------FDW---------PRIDNPKLT-F--------PLDAPN--L---DQVIALEEEALRQARAAFA 213 (431)
T ss_pred ccccccC-CCC-------CCC---------ccCCCCccc-C--------Cccccc--c---chhhHHHHHHHHHHHHHHH
Confidence 4333210 010 000 011222110 0 010000 0 0011223344566777776
Q ss_pred cCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecc
Q 003466 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689 (818)
Q Consensus 610 ~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK 689 (818)
.+++++||||+||| |++||++++|++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||
T Consensus 214 -----~~~~~iAavivEPv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK 287 (431)
T TIGR03251 214 -----ERPHDIACFIAEPI-QGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGK 287 (431)
T ss_pred -----hCCCcEEEEEEecc-ccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecc
Confidence 35689999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccceeecchHH---Hh-hccCC---------hH---------------------------HHHHHHHHHHHcC
Q 003466 690 LLTGGVIPLAATLATNAV---FD-SFVGD---------SK---------------------------LWDLELIQQISSH 729 (818)
Q Consensus 690 gLggGy~PlsAvl~~~~i---~~-~l~~~---------~~---------------------------~~~~~l~~~l~~~ 729 (818)
++ |+++++.++++ ++ .+... .. .+.+.+.+..+++
T Consensus 288 ~~-----~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~ 362 (431)
T TIGR03251 288 KT-----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEF 362 (431)
T ss_pred cC-----ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 96 56667777654 22 11100 00 1112222323457
Q ss_pred C-CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHH
Q 003466 730 R-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 730 ~-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+ .+.++||.|+|+++++... ..+..+++.|+++||++.+.+ +++||+||+++|++|||+++++|++
T Consensus 363 ~~~i~~vrg~G~~~~i~~~~~--------~~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 363 PHLVSNPRGRGLMCAFDLPST--------ADRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred ccceecccccceeEEEEeCCH--------HHHHHHHHHHHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 7 7899999999999999533 346678999999999998876 8999999999999999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=492.76 Aligned_cols=349 Identities=21% Similarity=0.276 Sum_probs=271.8
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. +|||.||| +|||+++|+|+.++||+ ||+|.+|+++|+++.... ...+++..+|+++|+
T Consensus 34 ~~p~~i~~a~G~--~l~D~dG~----~yiD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~L~ 103 (433)
T PRK00615 34 ITPPIVSSASGD--IFIDSLGK----TFIDFCGSWGSLIHGHS-HPKICDAIQQGAERGTSY---GLTSEQEILFAEELF 103 (433)
T ss_pred CCCceEEEeeeC--EEEECCCC----EEEEcccchhccccCCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHH
Confidence 357789998887 79999999 99999999999999999 999999999999986532 356899999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc---cccccccCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT---LGAMEAQAPS 530 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t---~~als~tg~~ 530 (818)
+.+|.+ .++|+|++|||||||+|||+| |.||+| .+||+|+++|||+| .+++++++..
T Consensus 104 ~~~~~~-~~~v~f~~SGsEA~e~AiklA-r~~tgr------------------~~ii~~~~~yHG~td~~~~~~~~~~~~ 163 (433)
T PRK00615 104 SYLGLE-DHKIRFVSSGTEATMTAVRLA-RGITGR------------------SIIIKFLGCYHGHADTLLQGISFSETS 163 (433)
T ss_pred HhCCCC-cCEEEEeCchHHHHHHHHHHH-HHhhCC------------------CEEEEEcCccCCCCcccCcccccCCCC
Confidence 988743 479999999999999999999 888764 58999999999998 6777776532
Q ss_pred CCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 003466 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (818)
Q Consensus 531 ~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~ 610 (818)
..... . ..+ ..++. + ..+. ++|||. +.+++.|++
T Consensus 164 ~~~~~----~--~~~--~~~~~----~--~~~~--------------~~~~d~------------------~~l~~~l~~ 197 (433)
T PRK00615 164 LDTLT----H--LVD--TDLAH----P--LTLS--------------LPYNDF------------------QIFQTVMNS 197 (433)
T ss_pred cCcCC----C--CCC--CCCCC----C--CeEe--------------CCCCCH------------------HHHHHHHHh
Confidence 11100 0 000 00000 0 0011 225553 556777763
Q ss_pred CCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccc
Q 003466 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690 (818)
Q Consensus 611 ~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKg 690 (818)
..+++||||+||| |+++|+++|+++||++|+++|++||++||+||||||| |+|.+|+++++|++|||+||||+
T Consensus 198 -----~~~~~aavI~Epv-~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~ 270 (433)
T PRK00615 198 -----LGHRVAGVIFEPI-CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKI 270 (433)
T ss_pred -----cCCceEEEEECCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEccc
Confidence 3478999999998 9999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccCCccccceeecchHHHhhccCChH--------------------------------------HHHHHHHHHHHcCCC-
Q 003466 691 LTGGVIPLAATLATNAVFDSFVGDSK--------------------------------------LWDLELIQQISSHRT- 731 (818)
Q Consensus 691 LggGy~PlsAvl~~~~i~~~l~~~~~--------------------------------------~~~~~l~~~l~~~~~- 731 (818)
|||| +|+|++++++++++.+..... .+.+.+.+.+.+++.
T Consensus 271 lggG-~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~ 349 (433)
T PRK00615 271 LGGG-LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFP 349 (433)
T ss_pred ccCC-cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999 699999999999998743110 111222333344322
Q ss_pred eeEEEeeeeEEEEEEecCccc-C-C---CchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 732 VQRVVALGTLCAIELQAAGCN-A-G---YGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 732 v~~vrg~Gl~~~iel~~~~~~-~-~---~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+..+| .|+|++++|..+... . . .+......+.+.|+++||++.+....- ...+..||++|||+++++++++++
T Consensus 350 v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~-~~ls~~ht~~did~~~~a~~~~~~ 427 (433)
T PRK00615 350 VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEA-SFLSSAHSMENLDYAQNVLIDSLE 427 (433)
T ss_pred eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccccc-cceecCCCHHHHHHHHHHHHHHHH
Confidence 77888 999999999865321 1 0 133456789999999999998753111 245778999999999999999987
Q ss_pred HH
Q 003466 807 EF 808 (818)
Q Consensus 807 ~l 808 (818)
.+
T Consensus 428 ~~ 429 (433)
T PRK00615 428 KV 429 (433)
T ss_pred HH
Confidence 65
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=490.38 Aligned_cols=351 Identities=22% Similarity=0.290 Sum_probs=283.0
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|+++++++|. |+||.||+ +||||+||+|+.++||+ ||+|++|+++|++++.+.+. .+.+++..+|+++|+++
T Consensus 58 p~~~~~a~G~--~l~d~dG~----~ylD~~sg~~~~~~Gh~-~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~L~~~ 129 (474)
T PLN02624 58 PVVFSRAKGS--RIWDPEGK----KYLDFLSAYSAVNQGHC-HPKIIKALTEQAEKLTLSSR-AFYNDKFPEFAEYLTSM 129 (474)
T ss_pred CceEEeeeeC--EEEECCCC----EEEEcccchhcccCCCC-CHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHHHHhh
Confidence 5688898887 79999999 99999999999999999 99999999999999876653 46789999999999998
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhh-cccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~-~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
++ .++++|++||+||||+|||+| |.|+. ++|. .++|.+||++.++|||+|.+++++++...++.
T Consensus 130 ~~---~~~~~f~~SGseA~e~AlklA-r~~~~~~~g~-----------~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 194 (474)
T PLN02624 130 FG---YDMVLPMNTGAEGVETAIKLA-RKWGYEKKGI-----------PKNEAIIVSCCGCFHGRTLAAISMSCDNEATR 194 (474)
T ss_pred cC---CCeEEEeCChHHHHHHHHHHH-HHHHHhhcCC-----------CCCCcEEEEECCCcCCCCHHHhhcCCCccccc
Confidence 86 579999999999999999999 66542 2221 02467899999999999999999997553332
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. +++. .| +..+ ++|||. +.+++.++
T Consensus 195 ~--------~~~~--~~------~~~~----------------~~~~d~------------------~~l~~~l~----- 219 (474)
T PLN02624 195 G--------FGPL--LP------GHLK----------------VDFGDL------------------DALEKIFE----- 219 (474)
T ss_pred c--------CCCC--CC------CceE----------------eCCCCH------------------HHHHHHHH-----
Confidence 2 1111 01 1111 125553 55677775
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++++|||+||+ ++++|+++|+++||++|+++|++||++||+|||||||||+|++|+++++++.||++|+||++|||
T Consensus 220 ~~~~~iaaiiiEpv-~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG 298 (474)
T PLN02624 220 EDGDRIAAFLFEPI-QGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGG 298 (474)
T ss_pred hCCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HHH------------HHHHHHH----HcCC-CeeEEEee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LWD------------LELIQQI----SSHR-TVQRVVAL 738 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~~------------~~l~~~l----~~~~-~v~~vrg~ 738 (818)
++|+|++++++++++.+..... .+. +.+.+.+ .+++ .+.+++|.
T Consensus 299 ~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~ 378 (474)
T PLN02624 299 VIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGR 378 (474)
T ss_pred CCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEee
Confidence 9999999999998876542111 111 1122222 3456 47789999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
|+++++++..+. .....+..+++.|+++||++.|.+ +.|||.||+++|++||++++++|++++++-.
T Consensus 379 G~~~~i~l~~~~----~~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~ 446 (474)
T PLN02624 379 GLLNAVVLNSPK----LGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEHDL 446 (474)
T ss_pred EEEEEEEecCCC----cChHHHHHHHHHHHhCCeEEecCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999996431 112356788999999999999864 8899999999999999999999999887654
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-51 Score=461.55 Aligned_cols=339 Identities=20% Similarity=0.278 Sum_probs=274.6
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.+. ...+++..+|+++|++
T Consensus 22 ~p~~~~~~~G~--~l~d~~G~----~~lD~~~g~~~~~lGh~-~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 93 (396)
T PRK04073 22 LPIVISEAEGV--WVKDPEGN----RYMDMLSAYSAVNQGHR-HPKIIQALKDQADKVTLTSR-AFHSDQLGPWYEKVAK 93 (396)
T ss_pred CCceEEeeeec--EEEECCCC----EEEEcCCCHHhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHh
Confidence 46788888886 79999999 99999999999999999 99999999999999887543 3568899999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhc-ccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~-~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+.+ .++++|++||+||||+|||+| |.|+.. .|. +++|.+||+++++|||+|.+++++++.+.++
T Consensus 94 ~~~---~~~~~~~~SGseA~e~Alk~a-~~~~~~~~g~-----------~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~ 158 (396)
T PRK04073 94 LTG---KDMVLPMNTGAEAVETAIKAA-RRWAYDVKGV-----------EPNKAEIIACEGNFHGRTMAAVSLSSEEEYK 158 (396)
T ss_pred cCC---CCeEEEcCChHHHHHHHHHHH-HHHhhhccCC-----------CCCCCEEEEECCCcCCCCHHHHhhcCCcccc
Confidence 876 379999999999999999999 666421 121 1456799999999999999999999755433
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .++. .| +..++ +|||+ +.+++.+.
T Consensus 159 ~~--------~~~~--~~------~~~~~----------------~~~d~------------------~~l~~~i~---- 184 (396)
T PRK04073 159 RG--------FGPM--LP------GIKKI----------------PYGDL------------------EALKAAIT---- 184 (396)
T ss_pred cC--------CCCC--CC------CceEe----------------CCCCH------------------HHHHHhcc----
Confidence 21 0000 01 11111 24442 44555553
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++||+||+ ++.+|.++++++|+++|+++|++||++||+|||++||||+|++++++++++.||++|+||++|+
T Consensus 185 ----~~~~~viiep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~ 259 (396)
T PRK04073 185 ----PNTAAFLVEPI-QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGG 259 (396)
T ss_pred ----cCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccC
Confidence 36899999998 9999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHHcC--CCeeEEEeeee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQISSH--RTVQRVVALGT 740 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~~~--~~v~~vrg~Gl 740 (818)
|++|+|++++++++++.+..... .+ .+.+.+.+++. +.+..+++.|+
T Consensus 260 gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~g~ 339 (396)
T PRK04073 260 GVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEIDNPMIKEVRGRGL 339 (396)
T ss_pred CCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCcccceecceE
Confidence 88999999999999988743211 11 11233334333 45788999999
Q ss_pred EEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 741 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 741 ~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
++++++... +..++++|+++||++.+.+ +.+||+||+++|++||++++++|++++
T Consensus 340 ~~~~~~~~~----------~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 340 FIGVELNEP----------ARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEEEEecch----------HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 999998532 4578899999999998765 799999999999999999999998875
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=455.28 Aligned_cols=339 Identities=22% Similarity=0.326 Sum_probs=277.8
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||| +||||+||+|++++||+ ||+|.+|+++|++++.+... .+.++.+.+|+++|++
T Consensus 13 ~~~~~~~~~G~--~~~d~dG~----~~lD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 84 (389)
T PRK01278 13 ADLAFERGEGV--WLIDEDGE----RYLDFASGIAVNSLGHA-HPHLVEALKEQAEKLWHVSN-LYRIPEQERLAERLVE 84 (389)
T ss_pred CCceEEeeecC--EEEECCCC----EEEECCccHhhccCCCC-CHHHHHHHHHHHHhcCcccc-ccCChHHHHHHHHHHh
Confidence 46788898887 79999999 99999999999999999 99999999999998765442 3568999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
..+ .++|+|++||+|||+.|+|+| |.|+...|+ ++|.+||+++++|||++.+++++++.+.++.
T Consensus 85 ~~~---~~~v~~~~sGseA~~~al~~a-r~~~~~~G~------------~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 148 (389)
T PRK01278 85 NSF---ADKVFFTNSGAEAVECAIKTA-RRYHYGKGH------------PERYRIITFEGAFHGRTLATIAAGGQEKYLE 148 (389)
T ss_pred hCC---CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCCcHHHHhccCChhhcc
Confidence 875 479999999999999999999 677655554 5678999999999999999999987654432
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ . |. .++..+ ++|+|+ +.+++.+.
T Consensus 149 ~~------------~-~~---~~~~~~----------------~~~~d~------------------~~l~~~l~----- 173 (389)
T PRK01278 149 GF------------G-PL---VPGFDQ----------------VPFGDI------------------EALKAAIT----- 173 (389)
T ss_pred cC------------C-CC---CCCceE----------------eCCCCH------------------HHHHHhhC-----
Confidence 20 0 00 001111 124543 45666663
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++||+||+ ++.+|+.++|++|+++|+++|++||++||+|||+|||||+|++++++++++.||++|+||++++|
T Consensus 174 ---~~~~avivep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 249 (389)
T PRK01278 174 ---PNTAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG 249 (389)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhccCC
Confidence 37999999998 99999999999999999999999999999999999999999999988999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HHH------------HHHHHH----HHcCC-CeeEEEee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LWD------------LELIQQ----ISSHR-TVQRVVAL 738 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~~------------~~l~~~----l~~~~-~v~~vrg~ 738 (818)
+|+|++++++++++.+..... .++ +.+.+. ...++ .+.++++.
T Consensus 250 -~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~ 328 (389)
T PRK01278 250 -FPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGK 328 (389)
T ss_pred -cceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCCceeeEecc
Confidence 799999999999887753211 110 111222 23466 67889999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
|+++++++..+ +..+++.|+++||++.|.+ +.+||.||+++++++|++++++|++++++
T Consensus 329 G~~~~i~~~~~----------~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 329 GLLLGLKCVVP----------NRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred cEEEEEEEecC----------HHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 99999988543 4578999999999999875 89999999999999999999999998865
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-52 Score=424.66 Aligned_cols=370 Identities=19% Similarity=0.272 Sum_probs=299.0
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+.|++++|. |++|.+|+ +||||++. +...||+ ||+|++|...|++..... ..+.|....+.|+.|.
T Consensus 28 sDP~kivRaq~Q--YmfDE~g~----~yLDCInN--VaHvghc-hp~VV~A~~kQmat~~tN--~RFlhd~lv~cA~~l~ 96 (452)
T KOG1403|consen 28 SDPLKIVRAQGQ--YMFDEEGT----RYLDCINN--VAHVGHC-HPEVVRAGAKQMATISTN--NRFLHDELVQCARTLT 96 (452)
T ss_pred CCchhhehhccc--eeeccCcc----cHHHHhhh--hhhcccC-CHHHHHHHHHHHhHhccc--chhhHHHHHHHHHHHh
Confidence 567888999998 69999999 99999984 4467999 999999999999986542 3467888999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
..+|. ++.++|+|||||||+.|||+| |.||++ .++|+++.+|||+....|-++-.++..
T Consensus 97 stlPe--Lsvc~F~NSGSEANDLALRLA-R~ftkh------------------qDvItldHAYHGHl~s~mE~SPYKF~~ 155 (452)
T KOG1403|consen 97 STLPE--LSVCFFVNSGSEANDLALRLA-RNFTKH------------------QDVITLDHAYHGHLQSVMEVSPYKFNQ 155 (452)
T ss_pred hcCCC--ceEEEEecCCchhhHHHHHHH-Hhhccc------------------CceEEEechhccceeeeeeccceeccC
Confidence 98875 899999999999999999999 888775 489999999999987777776322111
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
. . ...-| +-++..|.|+.|+... .+. ..+.......|.+.+++++++..
T Consensus 156 g-----~------~v~kp-----d~VHVAPcPDvyrGK~--------r~~------~~~~a~~~~~Yad~vk~I~~d~~- 204 (452)
T KOG1403|consen 156 G-----G------GVAKP-----DYVHVAPCPDVYRGKF--------RDK------MYPDADMGALYADPVKEICQDQL- 204 (452)
T ss_pred C-----C------CcCCC-----ceeEecCCcccccccc--------ccc------cCCcccchhhhhhHHHHHHHHHH-
Confidence 1 0 11111 1234557888886432 110 01112233456677777766421
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCCCCcEEEeccccc
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLT 692 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlgKgLg 692 (818)
..+..+||+|.|.. |+-||-+.||.+|++.+.+..+.+|-++|+||||+||||.|+ +|+++.|++.|||+|+||.+|
T Consensus 205 -~~g~gvAAfiAEsl-QSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmG 282 (452)
T KOG1403|consen 205 -AKGQGVAAFIAESL-QSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMG 282 (452)
T ss_pred -hcCCcHHHHHHHHH-HhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCC
Confidence 34567999999998 999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred CCccccceeecchHHHhhccCChH-------------------------------------HHHHHHHHHHHcCCCeeEE
Q 003466 693 GGVIPLAATLATNAVFDSFVGDSK-------------------------------------LWDLELIQQISSHRTVQRV 735 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~~-------------------------------------~~~~~l~~~l~~~~~v~~v 735 (818)
+| .|+++|+.+++|.+.|...+. .+..-|.+...+|++|++|
T Consensus 283 NG-hPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDv 361 (452)
T KOG1403|consen 283 NG-HPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDV 361 (452)
T ss_pred CC-CeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceecc
Confidence 99 799999999999998865322 1111223334689999999
Q ss_pred EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
||.|+++||+++.+...+.|+...|..+..+|++. ||++... .|.+.|.||++++++++++++..|+++|.-++
T Consensus 362 RGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT~me 439 (452)
T KOG1403|consen 362 RGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILTVME 439 (452)
T ss_pred ccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 99999999999999777788888888888899865 7999864 49999999999999999999999999998655
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-50 Score=455.93 Aligned_cols=363 Identities=24% Similarity=0.320 Sum_probs=287.6
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. ++||.||+ +||||++|+|+.++||+ ||+|.+|+++|++++.+..+....+++..+|+++|++
T Consensus 23 ~p~~~~~~~G~--~l~d~dG~----~~lD~~~g~~~~~lGh~-~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 95 (425)
T PRK08088 23 HPIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQ 95 (425)
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEEcCCchhhcCCCCC-CHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHH
Confidence 36688898886 79999999 99999999999999999 9999999999999987655444558899999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC-CC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~-~~ 533 (818)
..|.+..++++|++||+||||.|||+| |.++++ .+||+|+++|||+|.+++++++... ++
T Consensus 96 ~~~~~~~~~~~f~~sGsea~e~Alkla-r~~~~r------------------~~iv~~~~~yHG~~~~~~~~~~~~~~~~ 156 (425)
T PRK08088 96 KVPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR------------------SGVIAFTGAYHGRTHYTLALTGKVNPYS 156 (425)
T ss_pred hCCCCCCCEEEEeCCcHHHHHHHHHHH-HHHhCC------------------CeEEEECCccCCccHHHHHhhCCCCccc
Confidence 877543469999999999999999999 777653 4899999999999999999986421 22
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
. +.+.. + .+..++++|..+ ++. . ...+.+.+++.+++.
T Consensus 157 ~--------~~~~~--~------~~~~~~~~p~~~------------~~~-----------~-~~~~~~~l~~~l~~~-- 194 (425)
T PRK08088 157 A--------GMGLM--P------GHVYRALYPCPL------------HGV-----------S-EDDAIASIERIFKND-- 194 (425)
T ss_pred c--------CCCCC--C------CCcEEcCCCccc------------cCc-----------c-HHHHHHHHHHHHHhc--
Confidence 1 11111 1 112233344322 111 0 112245677777521
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.++++++|||+||+ ++++|+++++++|+++|+++|++||+++|+|||+|||||+|++++++++++.|||.+|||+|++
T Consensus 195 -~~~~~~aavi~Epi-~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~ 272 (425)
T PRK08088 195 -AAPEDIAAIIIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAG 272 (425)
T ss_pred -cCCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccC
Confidence 23578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~ 738 (818)
| +|+|++++++++++.+..... .+.+.+.+....+|.+..++|.
T Consensus 273 G-~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~ 351 (425)
T PRK08088 273 G-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL 351 (425)
T ss_pred C-CcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 9 799999999999987753221 1111222333557888999999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|+++.+++..+.....++...+..+.+.|+++||++.+. ++.+|+.||+++|++||++.+++|++++.++
T Consensus 352 G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 352 GAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred ceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 999999996542222233456788999999999988764 3899999999999999999999999998754
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-50 Score=454.51 Aligned_cols=350 Identities=19% Similarity=0.264 Sum_probs=273.3
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +|||+++|+|+.++||+ ||+|++|+++|+++..+ ....++...+|+++|++
T Consensus 32 ~~~~~~~a~G~--~l~d~dG~----~~lD~~~g~~~~~lGh~-~p~i~~a~~~~~~~~~~---~~~~~~~~~~la~~L~~ 101 (426)
T PRK00062 32 TPRFIERAKGA--YLYDVDGN----EYIDYVGSWGPMILGHA-HPEVVEAVIEAAEKGLS---FGAPTELEVELAELVIE 101 (426)
T ss_pred CCeEEEeCcCC--EEEeCCCC----EEEEcccchhhhhcCCC-CHHHHHHHHHHHHhCCc---CCCCCHHHHHHHHHHHH
Confidence 36788898887 79999999 99999999999999999 99999999999998432 23568889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.++. .++|+|++||+||||+|+|+| |.++++ .+||+|+++|||+|.++.+.++......
T Consensus 102 ~~~~--~~~v~~~~sGseA~e~Aik~a-~~~~g~------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 160 (426)
T PRK00062 102 LVPS--IEMVRMVNSGTEATMSAIRLA-RGYTGR------------------DKIIKFEGCYHGHADSLLVKAGSGAATL 160 (426)
T ss_pred hCCC--CCEEEEecCHHHHHHHHHHHH-HHHhCC------------------CeEEEEcCccCCchhhhhhccCcccccc
Confidence 8763 579999999999999999999 667543 5899999999999988887765332111
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. .++... .+.+ + .|..++ ++|||. +.+++.++.
T Consensus 161 ~--~~~~~~----~~~~----------~-~~~~~~--------~~~~d~------------------~~l~~~i~~---- 193 (426)
T PRK00062 161 G--LPDSPG----VPED----------F-AKHTLT--------APYNDL------------------EAVEELFEE---- 193 (426)
T ss_pred C--CCCCCC----CCcc----------c-ccceEE--------cCCCCH------------------HHHHHHHHh----
Confidence 0 111000 0000 0 010110 124543 556666752
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++++||+||+ ++++|+++++++||++|+++|++||+++|+||||||| |+|.+|+++++++.|||+++||+++||
T Consensus 194 -~~~~~aaiivEpv-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G 270 (426)
T PRK00062 194 -YGDEIAAVIVEPV-AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGG 270 (426)
T ss_pred -CCCcEEEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCC
Confidence 3578999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH--------------------------------------HHHHHHHHHHHcCCCeeEEE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK--------------------------------------LWDLELIQQISSHRTVQRVV 736 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~--------------------------------------~~~~~l~~~l~~~~~v~~vr 736 (818)
+|+|++++++++++.+..... .+.+.+.+..++++.+.++|
T Consensus 271 -~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vr 349 (426)
T PRK00062 271 -LPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVN 349 (426)
T ss_pred -CcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 799999999999997742110 11112223334578888999
Q ss_pred eeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 737 ALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 737 g~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|.|+|+++++..+... ..++...+..+.+.|+++||++.+.+ +.+++ ++++|++||++++++|+++++++
T Consensus 350 g~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~~--~~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 350 RVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFV--SAAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred EecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCceee--eccCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999754211 11233456789999999999999865 55554 58999999999999999998764
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=447.64 Aligned_cols=344 Identities=22% Similarity=0.313 Sum_probs=277.2
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++.+++|. ++||.||+ +||||+||+|+.+|||+ ||+|.+|+.+|++++.+... .+.++++.+|+++|++
T Consensus 22 ~~~~~~~~~G~--~~~d~dG~----~~iD~~~~~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 93 (403)
T PRK05093 22 AEFIPVRGEGS--RVWDQQGK----EYIDFAGGIAVTALGHC-HPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLID 93 (403)
T ss_pred CCeeEEEeecC--EEEeCCCC----EEEEcCcCHHhccCCCC-CHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHh
Confidence 35688898887 79999999 99999999999999999 99999999999998665432 2467889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+.+ .++++|++||+||||+|+|+| |.|+.+.+. .+|.+||+++++|||+|.+++++++.+.++.
T Consensus 94 ~~~---~~~~~~~~sGseA~e~a~kla-r~~~~~~~~------------~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~ 157 (403)
T PRK05093 94 ATF---AERVFFANSGAEANEAAFKLA-RRYACDRHG------------PEKTEIIAFHNSFHGRTLFTVSVGGQPKYSD 157 (403)
T ss_pred hCC---CCEEEEeCchHHHHHHHHHHH-HHHHhhcCC------------CCCCeEEEEcCCcCCchhhhHhhcCChhhhh
Confidence 875 479999999999999999999 777654322 4578999999999999999999887543322
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. + .+. + .+..+ ++|||. +.+++.+.
T Consensus 158 ~----~----~~~---~-----~~~~~----------------~~~~d~------------------~~l~~~l~----- 182 (403)
T PRK05093 158 G----F----GPK---P-----ADITH----------------VPFNDL------------------AAVKAVID----- 182 (403)
T ss_pred c----C----CCC---C-----CCcEE----------------eCCCCH------------------HHHHHHhc-----
Confidence 1 0 000 0 01111 225653 45666553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++||+||+ +++||+.+++++|+++|+++|++||+++|+|||++||||+|++++++++++.|||++|||++++|
T Consensus 183 ---~~~aaiiiep~-~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G 258 (403)
T PRK05093 183 ---DHTCAVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGG 258 (403)
T ss_pred ---CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHHc----CCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQISS----HRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~~----~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... .+ .+.+.+.|++ ++.+..+++.|
T Consensus 259 -~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G 337 (403)
T PRK05093 259 -FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMG 337 (403)
T ss_pred -cceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCc
Confidence 799999999999887753211 00 0112333332 45567899999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+++++++.... ...+..++..|+++||++.+.+ +.+|+.|++++++++|++++++|++++.++
T Consensus 338 ~~~~~~l~~~~------~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 338 LLIGAELKPQY------KGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred eEEEEEecCcc------hhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999996431 0246678999999999999866 899999999999999999999999988654
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=451.42 Aligned_cols=350 Identities=18% Similarity=0.265 Sum_probs=272.9
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. ++||.||| +|||+.+|+|+.++||+ ||+|++|+++|+++..+. ...++...+|+++|++
T Consensus 30 ~p~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~lae~l~~ 99 (423)
T TIGR00713 30 TPFFVARGKGA--YLYDVDGN----EYIDYVLSWGPLILGHA-HPRVVEAVKEALERGTSY---GAPTEAEILLAKEIIS 99 (423)
T ss_pred CCeeEEeccCC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCcC---CCCCHHHHHHHHHHHH
Confidence 47788898886 79999999 99999999999999999 999999999999986532 3467889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
..+. .++|+|++||+||||+|+|+| |.|+++ .+||+++++|||.+..++++++......
T Consensus 100 ~~~~--~~~v~~~~sGseA~e~Alk~a-r~~~gr------------------~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 158 (423)
T TIGR00713 100 RVPS--VEMVRFVNSGTEATMSAVRLA-RGYTGR------------------DKIIKFEGCYHGHHDALLVKAGSGAATL 158 (423)
T ss_pred hCCc--ccEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEEcCCCCCChhhhhccccCccccc
Confidence 8864 379999999999999999999 777653 5899999999999887777665321111
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
..++... + +. ...|..++ ++|||+ +.+++.+.+
T Consensus 159 --~~~~~~~----~--~~---------~~~~~~~~--------~~~~d~------------------~~l~~~i~~---- 191 (423)
T TIGR00713 159 --GLPTSPG----V--PE---------DFAKLTLV--------LPYNDL------------------EALEEVFEE---- 191 (423)
T ss_pred --CCCCCCC----C--Cc---------ccccceEE--------eCCCCH------------------HHHHHHHHH----
Confidence 0111100 0 00 00011110 124443 566777763
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.+++++|||+||+ ++++|+++++++|+++|+++|++||++||+|||+||| |+|.+|+++++++.||++||||++++|
T Consensus 192 -~~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G 268 (423)
T TIGR00713 192 -YGEEIAGVIVEPV-AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGG 268 (423)
T ss_pred -cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCC
Confidence 3578999999998 8999999988999999999999999999999999999 999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCCh------H--------------------------------HHHHHHHHHHHcCCCeeEEE
Q 003466 695 VIPLAATLATNAVFDSFVGDS------K--------------------------------LWDLELIQQISSHRTVQRVV 736 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~------~--------------------------------~~~~~l~~~l~~~~~v~~vr 736 (818)
+|+|++++++++++.+.... . .+.+.+.+.+++++.+.++|
T Consensus 269 -~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~ 347 (423)
T TIGR00713 269 -LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVN 347 (423)
T ss_pred -CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 79999999999998875211 0 11112333445678888999
Q ss_pred eeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 737 ALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 737 g~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.|+|+++++..+... ..++...+..+++.|+++||++.+.+ +.++++|+ +|++||++++++|+++++++
T Consensus 348 ~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~~--~t~~~i~~~~~~l~~~l~~~ 423 (423)
T TIGR00713 348 RVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAA--HTEEDIENTIEAAEEVFAEL 423 (423)
T ss_pred eeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeECC--CCHHHHHHHHHHHHHHHhhC
Confidence 9999999999754211 01123345678899999999998754 67888887 89999999999999998653
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=447.61 Aligned_cols=346 Identities=22% Similarity=0.299 Sum_probs=279.0
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|.++++++|. ++||.||+ +||||+|++++.++||+ ||+|++|+++|++++++.+. ...+++..+|+++|+++
T Consensus 20 ~~~~~~~~g~--~~~~~~g~----~~lD~~s~~~~~~~Gh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 91 (401)
T TIGR01885 20 PVVFSKAEGV--HVWDVEGK----RYLDFLSAYSAVNQGHC-HPKIVKALTEQAQKLTLSSR-AFYNDVFGEFAEYVTKL 91 (401)
T ss_pred CceEEeeecC--EEEeCCCC----EEEEcccCHhhccCCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhh
Confidence 5577888887 69999999 99999999999999999 99999999999999876543 24688999999999999
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcc-cccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH-EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~-G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
++ .++++|++||+||||+|||+| |.++.+. |. .+++.+|++++++|||+|.+++++++.+.+..
T Consensus 92 ~~---~~~~~~~~SGs~A~e~ai~~a-~~~~~~~~~~-----------~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~ 156 (401)
T TIGR01885 92 FG---YDKVLPMNTGAEAVETAIKLA-RKWGYKVKGI-----------PENQAIIVSAKGNFHGRTLGAISMSTDPDSRT 156 (401)
T ss_pred cC---CCEEEEeCccHHHHHHHHHHH-HHHhhhhcCC-----------CCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence 86 479999999999999999999 6665322 21 13468999999999999999999987543322
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. + +.. .| +..+ ++|||+ +.+++.|+.
T Consensus 157 ~-----~---~~~--~~------~~~~----------------~~~~d~------------------~~le~~l~~---- 182 (401)
T TIGR01885 157 N-----F---GPY--VP------GFKK----------------IPYNNL------------------EALEEALED---- 182 (401)
T ss_pred c-----c---CCC--CC------CceE----------------eCCCCH------------------HHHHHHHHh----
Confidence 1 0 100 01 1111 125553 567777763
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++++||+||+ ++++|++.++++|+++|+++|++||+++|+|||+|||||+|++++++++++.||++|+||+++||
T Consensus 183 -~~~~~~avi~E~v-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~g 260 (401)
T TIGR01885 183 -HGPNVCAFIVEPI-QGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGG 260 (401)
T ss_pred -cCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEeeccccCC
Confidence 3468999999998 99999999999999999999999999999999999999999999888899999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HHH------------HHHHHHHHcC--CCeeEEEeeeeE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LWD------------LELIQQISSH--RTVQRVVALGTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~~------------~~l~~~l~~~--~~v~~vrg~Gl~ 741 (818)
++|+|++++++++++.+..... .+. +.+.+.+++. +.+..++|.|+|
T Consensus 261 ~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~ 340 (401)
T TIGR01885 261 VYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLPKPIITEVRGRGLL 340 (401)
T ss_pred CCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhccCCceeEEeecCee
Confidence 8899999999999987754111 111 1233344444 566889999999
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+++++..+.. ...+..+++.|+++||++.|.+ +.+||.||+++|++||++++++|++++
T Consensus 341 ~~i~~~~~~~-----~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 341 NAIVIDESKT-----GRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred EEEEeccCcc-----hhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 9999864310 1246789999999999999865 899999999999999999999998876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=438.63 Aligned_cols=336 Identities=19% Similarity=0.228 Sum_probs=249.9
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++... ...++...+|+++|+
T Consensus 29 ~~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~---~~~~~~~~~la~~l~ 98 (431)
T PRK06209 29 LAPGFIQRGSGA--HVWDVDGN----EYIEYGMGLRAVGLGHA-YPPVVEAVREALQDGCNF---TRPSAIELDAAESFL 98 (431)
T ss_pred CCCeEEEeccCC--EEEeCCCC----EEEEccccccchhcCCC-CHHHHHHHHHHHHhCcCC---CCCCHHHHHHHHHHH
Confidence 457888998886 79999999 99999999999999999 999999999999987532 234556678999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE-cCCCCCCccccccccCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL-KGSYHGDTLGAMEAQAPSPY 532 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~-~~sYHG~t~~als~tg~~~~ 532 (818)
+.+|. .++|+|++|||||||+|||+| |+||+| .+|+.+ .++|||........+...
T Consensus 99 ~~~p~--~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~i~~~~~~~~h~~~~~~~g~~~~~-- 155 (431)
T PRK06209 99 ELIDG--ADMVKFCKNGSDATSAAVRLA-RAYTGR------------------DLVARCADHPFFSTDDWFIGTTPMS-- 155 (431)
T ss_pred HhCCc--cceEEEecCHHHHHHHHHHHH-HHHhCC------------------CeEEEeccCccccccccccccCCCC--
Confidence 98864 579999999999999999999 888764 488998 788887321111000000
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
. + .|. .. +..+.. ++|||+ +.+++.|+
T Consensus 156 -~----------~----~~~-----~~--~~~~~~----------~~~~d~------------------~~l~~~l~--- 182 (431)
T PRK06209 156 -A----------G----IPA-----SV--SALTVT----------FRYNDI------------------ASLEALFE--- 182 (431)
T ss_pred -C----------C----CCh-----hH--hccccc----------cCCCCH------------------HHHHHHHH---
Confidence 0 0 000 00 000111 225653 56777776
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg 692 (818)
.+++++||||+||+ +++ .+|++||++|+++|++||++||+|||||||++++ ++..+++|+.|||+|+||+||
T Consensus 183 --~~~~~~aavi~Epv-~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~PDi~t~gK~lg 254 (431)
T PRK06209 183 --DHPGRIACVILEPA-TAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-RGAQKLYGIVPDLSCFGKALG 254 (431)
T ss_pred --hCCCCEEEEEEccc-cCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-chhhHHhCCCcceeeehhhhc
Confidence 34578999999998 775 7799999999999999999999999999998753 344456899999999999999
Q ss_pred CCccccceeecchHHHhh--cc----CC----hH---------------------------------HHHHHHHHHHHcC
Q 003466 693 GGVIPLAATLATNAVFDS--FV----GD----SK---------------------------------LWDLELIQQISSH 729 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~--l~----~~----~~---------------------------------~~~~~l~~~l~~~ 729 (818)
|| +|+|++++++++++. +. .. +. ++.+.+.+...++
T Consensus 255 gG-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~ 333 (431)
T PRK06209 255 NG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEH 333 (431)
T ss_pred CC-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99 699999999999986 31 11 00 1111222223457
Q ss_pred CCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 730 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 730 ~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+.+.++|+.|.++++++........+.......+.+.|+++||++.| +..+..||++||++++++++++++++.
T Consensus 334 ~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~------l~is~~ht~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 334 GLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS------LVVSYAHGDADIERTIDAVHGALGVYR 407 (431)
T ss_pred CCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc------ccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999998743211122333445788999999998743 334457799999999999999999885
Q ss_pred H
Q 003466 810 K 810 (818)
Q Consensus 810 ~ 810 (818)
+
T Consensus 408 ~ 408 (431)
T PRK06209 408 K 408 (431)
T ss_pred H
Confidence 4
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=430.05 Aligned_cols=331 Identities=24% Similarity=0.302 Sum_probs=268.8
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +||||+|++|+.+|||+ ||+|++|+++|++++.+.+ ..+.++...+|+++|.+
T Consensus 11 ~~~~~~~~~G~--~~~d~~G~----~~lD~~s~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 82 (377)
T PRK02936 11 FPIDIVKGKGT--KVTDNNGK----TYLDFTSGIAVCNLGHC-HPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAE 82 (377)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHh
Confidence 45688898887 69999999 99999999999999999 9999999999999875543 23458889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
..+ .++++|++||+|||++|+|+| |.+++ +.+||+++++|||++++++++++...++.
T Consensus 83 ~~~---~~~~~~~~sG~~a~~~A~~~a-~~~~g------------------~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~ 140 (377)
T PRK02936 83 NSA---GDLVFFCNSGAEANEAALKLA-RKHTG------------------KSKIVTFEQSFHGRTFGTMSATGQEKIKE 140 (377)
T ss_pred cCC---CCEEEEeCCcHHHHHHHHHHH-HHhcC------------------CCeEEEECCCcCCCcHHhhhccCCccccc
Confidence 775 368999999999999999999 66654 35899999999999999999887544332
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. .++.. + +..+ ++|||+ +.+++.+.
T Consensus 141 ~--------~~~~~--~------~~~~----------------~~~~d~------------------~~l~~~~~----- 165 (377)
T PRK02936 141 G--------FGPLL--P------GFTH----------------VPFNDI------------------KALKEVMN----- 165 (377)
T ss_pred c--------CCCCC--C------CceE----------------eCCCCH------------------HHHHHhcc-----
Confidence 2 00000 0 1111 124543 45666553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++||+||+ ++++|+.+++++|+++|+++|++||+++|+|||+|||||+|++++++++++.||++|+||++++|
T Consensus 166 ---~~~~~ii~e~i-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G 241 (377)
T PRK02936 166 ---EEVAAVMLEVV-QGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNG 241 (377)
T ss_pred ---CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcccccCC
Confidence 46899999998 99999999999999999999999999999999999999999988888899999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HH------------HHHHHHH----HHcCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQ----ISSHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~----l~~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... .+ .+.+.+. +..++.+..+++.|
T Consensus 242 -~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 320 (377)
T PRK02936 242 -IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKG 320 (377)
T ss_pred -CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecc
Confidence 799999999999988753211 00 0112222 33467788899999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+++.+++..+ +..+.+.|.++||++.+.+ +.+||.||+.+++++|++++++|++++
T Consensus 321 ~~~~i~~~~~----------~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 321 LMIGIECTEE----------VAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred eEEEEEecch----------HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 9999998642 4568889999999999876 899999999999999999999998763
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=432.34 Aligned_cols=338 Identities=22% Similarity=0.261 Sum_probs=275.2
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||| +||||.+|+|++++||+ ||+|.+|+++|++++++.. ..+.++...+|+++|++
T Consensus 25 ~~~~~~~~~G~--~~~d~dg~----~~lD~~s~~~~~~lG~~-~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 96 (398)
T PRK03244 25 PPLALVRGEGA--VVWDVDGK----EYLDLLGGIAVNALGHA-HPAVVEAVTRQLATLGHVS-NLFATEPQIALAERLVE 96 (398)
T ss_pred CCceEEEeeec--EEEECCCC----EEEECCcCHhhccCCCC-CHHHHHHHHHHHHhccCcc-CccCCHHHHHHHHHHHH
Confidence 46788888886 79999999 99999999999999999 9999999999999987643 23567888999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.++....++++|++||+||++.|+|++ +. ++ |.+||.++++|||++.+++++++...+..
T Consensus 97 ~~~~~~~~~v~~~~sgsea~~~al~~~-~~-~g------------------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 156 (398)
T PRK03244 97 LLGAPEGGRVFFCNSGAEANEAAFKLA-RL-TG------------------RTKIVAAEGGFHGRTMGALALTGQPAKRA 156 (398)
T ss_pred hCCCCCCCEEEEeCchHHHHHHHHHHH-HH-HC------------------CCeEEEECCCcCCccHHHHhccCCccccc
Confidence 877432469999999999999999999 43 22 35899999999999999998887543322
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. + .+ +. .+... + +|+|. +.+++.+.
T Consensus 157 ~----~-~~----~~-------~~~~~--~--------------~~~d~------------------~~l~~~~~----- 181 (398)
T PRK03244 157 P----F-EP----LP-------GGVEH--V--------------PYGDV------------------DALAAAVD----- 181 (398)
T ss_pred C----C-CC----CC-------CCceE--e--------------CCCCH------------------HHHHHhhc-----
Confidence 1 0 00 00 00111 1 13442 44555552
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++|++||+ |+.+|+++|+++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++||||+|++|
T Consensus 182 ---~~~~aviiep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~l~~G 257 (398)
T PRK03244 182 ---DDTAAVFLEPI-QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGG 257 (398)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchhhhCC
Confidence 47899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------------------HHHHHHHHHHHc--CCCeeEEEeeeeE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------------------LWDLELIQQISS--HRTVQRVVALGTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------------------~~~~~l~~~l~~--~~~v~~vrg~Gl~ 741 (818)
+|+|++++++++++.+..... .+.+.+.+.++. ++.+..++|.|++
T Consensus 258 -~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~ 336 (398)
T PRK03244 258 -LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEALGHPLVDHVRGRGLL 336 (398)
T ss_pred -cccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEE
Confidence 799999999999987754211 011224455554 5667889999999
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+++++..+ .+..+.+.|+++||++.+.+ +.||++||+.+|++||++++++|++++.+++
T Consensus 337 ~~i~~~~~---------~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 337 LGIVLTAP---------VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred EEEEEecc---------HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 99999532 35678899999999999865 8999999999999999999999999997754
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=427.61 Aligned_cols=342 Identities=19% Similarity=0.267 Sum_probs=273.5
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|.++++++|. |+||.||+ +|||+++|+|+.++||+ ||+|.+|+++|++++++.+. ...++...+|+++|+++
T Consensus 24 ~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~~Gh~-~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 95 (401)
T PRK00854 24 DVVLTRGEGV--WVWDTDGN----RYLDCLSAYSAVNQGHC-HPKILAAMVEQAGRLTLTSR-AFRNDQLAPLYEELAAL 95 (401)
T ss_pred CceEEeeeeC--EEEECCCC----EEEEcCcchhhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhh
Confidence 4578888887 79999999 99999999999999999 99999999999999877543 35578999999999999
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhh-cccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~-~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.+. ++++|++||+||||+|||+| |.++. +.|. +++|.+||+++++|||+|.+++++++.+..+.
T Consensus 96 ~~~---~~~~~~~SGs~A~e~al~~a-~~~~~~~~g~-----------~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 96 TGS---HKVLPMNSGAEAVETAIKAV-RKWGYEVKGV-----------PEGQAEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred CCC---CEEEEeCCcHHHHHHHHHHH-HHHHHhccCC-----------CCCCceEEEECCCcCCccHHHHhccCCccccc
Confidence 873 69999999999999999999 55532 2222 13467999999999999999888876543322
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. +. +. .+ +..+ ++|+|. +.+++.+.
T Consensus 161 ~-----~~---~~--~~------~~~~----------------~~~~d~------------------~~le~~i~----- 185 (401)
T PRK00854 161 G-----FG---PF--TP------GFRV----------------VPFGDA------------------EALEAAIT----- 185 (401)
T ss_pred c-----CC---CC--CC------CeEE----------------eCCCCH------------------HHHHHHhC-----
Confidence 1 00 00 01 1111 125553 45666663
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++||+||+ ++.+|.+.++++||++|+++|++||++||+|||+|||||+|++++.+++|+.||++++||+|+||
T Consensus 186 ---~~~~aii~e~~-~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg 261 (401)
T PRK00854 186 ---PNTVAFLVEPI-QGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGG 261 (401)
T ss_pred ---CCeEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999988888899999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HHH------------HHHHHHHHcC--CCeeEEEeeeeE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LWD------------LELIQQISSH--RTVQRVVALGTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~~------------~~l~~~l~~~--~~v~~vrg~Gl~ 741 (818)
++|+|++++++++++.+..... .+. +.+.+.|+.. +.+.++++.|++
T Consensus 262 ~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~ 341 (401)
T PRK00854 262 FYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLM 341 (401)
T ss_pred ccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhccCceEEEeccceE
Confidence 8999999999999987753211 111 1223334433 235678999999
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+.+++..+. ..+..+++.|+++||++.+. ++.+||+||+.+|++||++++++|++++.
T Consensus 342 ~~i~~~~~~-------~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 342 LAVELEPEA-------GGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred EEEEEecCc-------hhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 999886441 23567899999999999875 48999999999999999999999998763
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=423.74 Aligned_cols=348 Identities=21% Similarity=0.289 Sum_probs=275.6
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++.+++|. |+||.||+ +||||+||+++.++||+ ||+|.+|+++|++++++.+. .+.++...+++++|++
T Consensus 13 ~~~~~~~~~G~--~~~d~dg~----~~lD~~~~~~~~~~Gh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 84 (400)
T PTZ00125 13 LPVVLKRGKGV--FVWDVEGK----KYYDFLSAYSAVNQGHC-HPKILAALINQAQKLTLTSR-AFYNDVLGLAEKYITD 84 (400)
T ss_pred CCccEEeeecC--EEEeCCCC----EEEEcccCHhhccCCcC-CHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHHh
Confidence 35678888887 79999999 99999999999999999 99999999999998887543 2347788888899888
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhh-hcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t-~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+++ .++++|++||++|||+|||++ |.++ .++|. ..++.+||+++++|||++.+++++++...+.
T Consensus 85 ~~~---~~~~~~~~SGs~A~e~al~~~-~~~~~~~~~~-----------~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~ 149 (400)
T PTZ00125 85 LFG---YDKVLPMNSGAEAGETALKFA-RKWGYEVKGI-----------PENQAKIIFCNGNFSGRTIGACSASTDPKCY 149 (400)
T ss_pred CCC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCC-----------CCCCCeEEEECCCcCCccHHHHhhcCCcchh
Confidence 765 579999999999999999999 5442 22221 0246799999999999999999988643221
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. +. ... + +... +.|+|+ +.+++.++
T Consensus 150 ~~-----~~---~~~--~------~~~~----------------~~~~d~------------------~~le~~l~---- 175 (400)
T PTZ00125 150 NN-----FG---PFV--P------GFEL----------------VDYNDV------------------EALEKLLQ---- 175 (400)
T ss_pred cc-----CC---CCC--C------CceE----------------eCCCCH------------------HHHHHHhC----
Confidence 11 00 000 0 0001 124443 56676664
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+++++|++||+ ++.+|++.++++|+++|+++|++||++||+|||++||||+|++++.+++++.||++++||++++
T Consensus 176 ---~~~~~~v~~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~sK~l~~ 251 (400)
T PTZ00125 176 ---DPNVAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSG 251 (400)
T ss_pred ---CCCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEcccccC
Confidence 247999999998 9999999999999999999999999999999999999999999888889999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-------------------HHH------------HHHHHHH----HcCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-------------------LWD------------LELIQQI----SSHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-------------------~~~------------~~l~~~l----~~~~~v~~vrg~ 738 (818)
|++|+|++++++++++.+..... .+. +.+.+.+ ..++.+..+++.
T Consensus 252 g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 331 (400)
T PTZ00125 252 GLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGK 331 (400)
T ss_pred CCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 97899999999999887643211 011 1122222 335677789999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
|+++++++..+. ...+..+++.|+++||++.|.+ +.+||.|++++++++|++++++|++++.+++
T Consensus 332 g~~~~v~~~~~~------~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 332 GLLNAIVFDHSD------GVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred cEEEEEEEccCc------chHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 999999986421 1346678999999999999864 8999999999999999999999999988764
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=407.48 Aligned_cols=328 Identities=24% Similarity=0.283 Sum_probs=262.5
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. |+||.||+ +|||+.|++|+.++|| ||+|++|+.+|++++.+.. ....++...+++++|..
T Consensus 11 ~~~~~~~~~G~--~l~d~dg~----~~lD~~s~~~~~~lG~--~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 81 (375)
T PRK04260 11 AAIEFVKAEGN--YLIDTDGK----KYLDFSSGIGVTNLGF--HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIG 81 (375)
T ss_pred CCceEEEeeeC--EEEeCCCC----EEEECCCCcccccCCC--CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhc
Confidence 35688888887 79999999 9999999999999999 6999999999999875433 23457778888887765
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.. ..+++|++||+|||+.|+|+| |.+++ +.+||+++++|||++.+++++++.+.++.
T Consensus 82 ~~----~~~~~~~~SGseA~~~Al~~a-r~~~~------------------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~ 138 (375)
T PRK04260 82 DK----DYLAFFCNSGAEANEAAIKIA-RKATG------------------KQEIITFQNSFHGRTFGSMSATGQDKIKD 138 (375)
T ss_pred Cc----CCEEEEcCccHHHHHHHHHHH-HHhcC------------------CCeEEEECCCcCcccHHHHhccCCcccCC
Confidence 21 246899999999999999999 66644 35899999999999999999987654332
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. + +.. ++. .+. ..|||. +.+++.+.
T Consensus 139 ~----~----~~~--~~~-----------~~~-----------~~~~dl------------------~~l~~~l~----- 163 (375)
T PRK04260 139 G----F----GDG--VPH-----------FSY-----------AIFNDL------------------NSVKALVN----- 163 (375)
T ss_pred C----C----CCC--CCC-----------eEE-----------eCCCCH------------------HHHHHhcC-----
Confidence 2 0 000 000 000 014442 45555552
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++|++||+ ++++|+++++++|+++++++|+++|+++|+||+++||||+|.++.++.+++.||++||||+|++|
T Consensus 164 ---~~~a~vi~e~v-~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 239 (375)
T PRK04260 164 ---KNTAAVMLELV-QGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANG 239 (375)
T ss_pred ---CCeEEEEECCe-ECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEecccccCC
Confidence 46899999998 99999999999999999999999999999999999999999988888899999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... .+.+.+.+.+.+++.+..+++.|
T Consensus 240 -~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 318 (375)
T PRK04260 240 -VPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLG 318 (375)
T ss_pred -cceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEeccc
Confidence 799999999999987753211 11112333345666778899999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
+++++++..+ +..+.+.|+++||++.+.+ +.+|+.||+++|++||++++++|+++
T Consensus 319 ~~~~~~~~~~----------~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 319 YMIGIETTAD----------LSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred eEEEEEecCc----------HHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 9999999432 4578999999999998876 78999999999999999999999875
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=407.74 Aligned_cols=350 Identities=25% Similarity=0.358 Sum_probs=278.8
Q ss_pred hcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc
Q 003466 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (818)
Q Consensus 357 ~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~ 436 (818)
...++|++++. .|.++++++|. ++||.||+ +|||+.+|++++++||+ ||+|.+|+++|+++..+..
T Consensus 10 ~~~~~~~~~~~-------~~~~~~~~~G~--~~~d~dg~----~~iD~~~g~~~~~lG~~-~p~v~~a~~~~~~~~~~~~ 75 (396)
T PRK02627 10 EKKYLMNTYGR-------LPIAFVRGEGA--RLWDDDGK----EYLDFLAGIAVNNLGHC-HPKLVEAIQEQAAKLIHTS 75 (396)
T ss_pred HHHhhcccccC-------CCceEEeeeeC--EEEeCCCC----EEEECCccHHhccCCCC-CHHHHHHHHHHHhhccccc
Confidence 33445666543 35688898887 79999999 99999999999999999 9999999999999875543
Q ss_pred CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCC
Q 003466 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (818)
Q Consensus 437 ~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sY 516 (818)
. .+.++...+|+++|++..+ .++++|++||+||++.|+|++ +.++++.+ .++.+|++++++|
T Consensus 76 ~-~~~~~~~~~la~~l~~~~~---~~~v~~~~gg~eA~~~al~~a-~~~~~~~~-------------~~~~~ii~~~~~y 137 (396)
T PRK02627 76 N-LYYIEPQEELAEKLVELSG---MDKVFFCNSGAEANEAAIKLA-RKYGHKKG-------------IEKPEIITAENSF 137 (396)
T ss_pred c-ccCCHHHHHHHHHHHhhcC---CCEEEECCCcHHHHHHHHHHH-HHHhcccC-------------CCCCeEEEECCCc
Confidence 2 3568899999999999865 489999999999999999999 67766533 2346899999999
Q ss_pred CCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhH
Q 003466 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (818)
Q Consensus 517 HG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~ 596 (818)
||.+..++++++...++..+ .+. .++..+ ++|||+
T Consensus 138 hg~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~----------------~~~~d~------------- 172 (396)
T PRK02627 138 HGRTLATLSATGQPKYQEGF-EPL---------------VEGFIY----------------VPFNDI------------- 172 (396)
T ss_pred CcccHHHHHhcCCccccccC-CCC---------------CCCceE----------------eCCCCH-------------
Confidence 99999999988755433210 000 001111 114442
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhc
Q 003466 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 597 ~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
+.+++.+. +++++|++||+ ++.+|+.+++++|+++|+++|++||++||+||+++||||+|++++++
T Consensus 173 -----~~l~~~i~--------~~~~~vii~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~ 238 (396)
T PRK02627 173 -----EALKAAIT--------DKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQ 238 (396)
T ss_pred -----HHHHHhcC--------CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeeh
Confidence 45555552 47899999998 99999889999999999999999999999999999999999988888
Q ss_pred ccCCCCcEEEecccccCCccccceeecchHHHhhccCChH-----------------------------------HHHHH
Q 003466 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLE 721 (818)
Q Consensus 677 ~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~ 721 (818)
.+++.||+++|||++++| +|+|++++++++++.+..... .+.+.
T Consensus 239 ~~~~~pdi~t~sK~~~~G-~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~ 317 (396)
T PRK02627 239 HYGIEPDIMTLAKGLGGG-VPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAK 317 (396)
T ss_pred hcCCCCCEEEEcchhhCC-cccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 899999999999999999 799999999999988753211 01111
Q ss_pred HHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHH
Q 003466 722 LIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLK 800 (818)
Q Consensus 722 l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~ 800 (818)
+.+.+..++.+..+++.|+++.+++..+ +..+++.|+++||++.+.+ +.+|+.|++.+++++|++++++
T Consensus 318 l~~~~~~~~~~~~~~~~g~~~~i~~~~~----------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~ 387 (396)
T PRK02627 318 LRELLEKYPGIKEVRGLGLMIGIELDRP----------AAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDR 387 (396)
T ss_pred HHHHHHhCCCeeeeccCcEEEEEEecCc----------HHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHH
Confidence 2222344666778999999999998322 5678999999999999865 7899999999999999999999
Q ss_pred HHHHHHHH
Q 003466 801 LYQRLEEF 808 (818)
Q Consensus 801 l~~~l~~l 808 (818)
|+++++++
T Consensus 388 l~~~l~~~ 395 (396)
T PRK02627 388 LEEVLKEL 395 (396)
T ss_pred HHHHHHhh
Confidence 99988654
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=406.98 Aligned_cols=373 Identities=28% Similarity=0.390 Sum_probs=287.4
Q ss_pred hhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccc
Q 003466 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (818)
Q Consensus 355 ~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~ 434 (818)
+++++++|++++. ...|.++++++|. ++||.||+ +|||+++|+|+.++||+ ||+|++|+++|+++..+
T Consensus 3 ~~~~~~~~~~~~~-----~~~~~~~~~~~g~--~~~d~dG~----~~id~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~ 70 (413)
T cd00610 3 ERDRKVLWHGYTV-----RPYPLVIVRAEGA--YLYDVDGN----RYLDFLSGIGVLNLGHN-HPEVVEALKEQLAKLTH 70 (413)
T ss_pred chhhhhccccccC-----CCCCceEEeeecC--EEEeCCCC----EEEEcCccHHhhccCCC-CHHHHHHHHHHHHhCcC
Confidence 4567789999871 2457889998887 79999999 99999999999999999 99999999999987765
Q ss_pred ccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcC
Q 003466 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (818)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~ 514 (818)
.....+.++...+|+++|++++|.+ .++++|++||+|||+.|++++ |.+++ +.+||++++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgsea~~~al~~~-~~~~~------------------~~~ii~~~~ 130 (413)
T cd00610 71 FSLGFFYNEPAVELAELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYTG------------------RKKIISFEG 130 (413)
T ss_pred ccCcccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHcC------------------CCeEEEECC
Confidence 4432346899999999999998743 589999999999999999999 66644 358999999
Q ss_pred CCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCch
Q 003466 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (818)
Q Consensus 515 sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~ 594 (818)
+|||++.+++++++...++.. +. ... .....++.+.+.. ..
T Consensus 131 ~yhg~~~~~~~~~~~~~~~~~-----~~-------~~~----~~~~~~~~~~~~~-----------------------~~ 171 (413)
T cd00610 131 AYHGRTLGALSLTGSKKYRGG-----FG-------PLL----PGVLHVPYPYRYR-----------------------PP 171 (413)
T ss_pred CcCCccHHHHHhcCCcccccc-----CC-------CCC----CCcEEeCCCcccc-----------------------ch
Confidence 999999999998875433321 00 000 0111111111000 00
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch
Q 003466 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (818)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a 674 (818)
.......+.+++.+. .+++++++||+||+ ++++|.++++++|+++|+++|++||+++|+|||++||||+|.+++
T Consensus 172 ~~~~~d~~~l~~~l~-----~~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~ 245 (413)
T cd00610 172 AELADDLEALEEALE-----EHPEEVAAVIVEPI-QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFA 245 (413)
T ss_pred hhHHHHHHHHHHHHh-----cCCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhh
Confidence 001112366777776 33568999999998 999999999999999999999999999999999999999999989
Q ss_pred hcccCCCCcEEEecccccCCccccceeecchHHHhhc--cCChH-------------------HHH------------HH
Q 003466 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF--VGDSK-------------------LWD------------LE 721 (818)
Q Consensus 675 ~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l--~~~~~-------------------~~~------------~~ 721 (818)
++++++.||++++||++++| +|+|++++++++++.+ ..... .+. +.
T Consensus 246 ~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~ 324 (413)
T cd00610 246 FEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEY 324 (413)
T ss_pred HhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999 7999999999999975 11100 111 11
Q ss_pred HHHHHH----cCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHH
Q 003466 722 LIQQIS----SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQ 796 (818)
Q Consensus 722 l~~~l~----~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~ 796 (818)
+.+.++ .++.+..+++.|.++.+.+..+.....++...+..+++.|+++||++.+. ++.+|+.|++.+|++||++
T Consensus 325 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~~~t~~~i~~ 404 (413)
T cd00610 325 LRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDE 404 (413)
T ss_pred HHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHH
Confidence 222222 23567778999999999997542111222345678999999999999987 5899999999999999999
Q ss_pred HHHHHHHHH
Q 003466 797 LLLKLYQRL 805 (818)
Q Consensus 797 ~~~~l~~~l 805 (818)
++++|++++
T Consensus 405 ~~~~l~~~l 413 (413)
T cd00610 405 GLDALDEAL 413 (413)
T ss_pred HHHHHHHhC
Confidence 999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=361.60 Aligned_cols=374 Identities=20% Similarity=0.208 Sum_probs=271.5
Q ss_pred eecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHH-hhhhcccccCCCCCChhHHHHHHH----HHhc
Q 003466 381 SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGY-TAARFGHVMFPENVYEPALECAEL----LLQG 455 (818)
Q Consensus 381 ~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~-q~~~~~~~~~~~~~~~~~~eLae~----L~~~ 455 (818)
+..|. |++|+||| .+||..+.+.+..+||| ||.++++++. |+.+.- +..+...+-|..++++. |...
T Consensus 64 kS~GN--YlvDvDGN----~lLDvYsQIsSvplGYn-~P~LvK~a~~p~~~~~l-vnRPALg~fP~kd~~~~l~~~ll~~ 135 (484)
T KOG1405|consen 64 KSIGN--YLVDVDGN----RLLDVYSQISSVPLGYN-NPALVKAAQQPQNATML-VNRPALGNFPPKDFAEKLRQSLLSI 135 (484)
T ss_pred hhcCc--eEEecCCC----eeehhhhhhcccccCCC-CHHHHHHhcChHHHHHH-hccccccCCChhhHHHHHHHHHHhh
Confidence 45687 69999999 99999999999999999 9999998874 433321 11111112233444444 4445
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhh-hcccccccccCCC-------ccccccceEEEEEcCCCCCCcccccccc
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKD-------TTEKCIELKVLALKGSYHGDTLGAMEAQ 527 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t-~~~G~~~~~~~~~-------~~~~~~r~~II~~~~sYHG~t~~als~t 527 (818)
.|+| +..|.+.-+||.|||.|+|.|+-+|. +++|+ .++..++ +.+......|++|.|+|||++++++|.|
T Consensus 136 APKG-~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~-~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT 213 (484)
T KOG1405|consen 136 APKG-QKQVITMLCGSCANENAYKTAFIWYRAKERGQ-AGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTT 213 (484)
T ss_pred Ccch-HHHHHHHhccccccHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccc
Confidence 6766 68999999999999999999976664 33442 1221111 2244456789999999999999999999
Q ss_pred CCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHH
Q 003466 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607 (818)
Q Consensus 528 g~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~ 607 (818)
..+..+.. .-+.|+||-..+. ...+|-.. .+.+| ...++.|++.+|++
T Consensus 214 ~SKpIHKl--------diPaFdWPiA~fP----~ykYPLde--------nv~~N------------~ked~~Cl~~Ve~l 261 (484)
T KOG1405|consen 214 HSKPIHKL--------DIPAFDWPIAPFP----RYKYPLDE--------NVAEN------------KKEDQGCLAEVEDL 261 (484)
T ss_pred cCcccccc--------CCCCCCCCCCCCc----cccCChhh--------hhhhh------------hhhhhhHHHHHHHH
Confidence 87765543 2234566543220 01111100 11122 12345667888888
Q ss_pred HhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC--CCcEE
Q 003466 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDIA 685 (818)
Q Consensus 608 L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv--~PDiv 685 (818)
|..+. .....|||+||||| |++||+...++.|+++||++|++||+.+|+||||||-|-||++|++++|++ .||++
T Consensus 262 i~~~~--~k~~pVaaiIvEPI-QsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~v 338 (484)
T KOG1405|consen 262 IVKYR--KKKKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVV 338 (484)
T ss_pred HHHHh--hcCCCeEEEEeech-hccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccce
Confidence 88652 23457999999998 999999999999999999999999999999999999999999999999998 58999
Q ss_pred Eecccc-cCCccccceeecch--HHHhhccCChH--------------------------HHHHHHHHHHHcCCC-eeEE
Q 003466 686 CYGKLL-TGGVIPLAATLATN--AVFDSFVGDSK--------------------------LWDLELIQQISSHRT-VQRV 735 (818)
Q Consensus 686 tlgKgL-ggGy~PlsAvl~~~--~i~~~l~~~~~--------------------------~~~~~l~~~l~~~~~-v~~v 735 (818)
||||-+ +|||+---...-++ +++.++.+... .+..+|.+.-+++|. +..+
T Consensus 339 TFSKK~q~gGffh~~~frpn~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~ 418 (484)
T KOG1405|consen 339 TFSKKFQTGGFFHDEEFRPNEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNL 418 (484)
T ss_pred ehhhhhhcCccccCcccCCCchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcc
Confidence 999977 68875443333332 23333333322 112233444467775 7889
Q ss_pred EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
||+|.++++++... ..-..++..++-+|+.+..+| ..|||.|++++++-+.+-++++|++.+..
T Consensus 419 RGrGTF~a~d~ps~--------~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 419 RGRGTFIAWDCPSG--------SIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred cccceEEEEeCCCh--------HHHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence 99999999999766 455678889999999999887 78999999999999999999999998864
|
|
| >COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=334.52 Aligned_cols=198 Identities=31% Similarity=0.406 Sum_probs=173.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCC---CchHHHHHhccCCccccCCCccccc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHD---SDSRFLFTKLPSLSLRRNFPSSLIL 112 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (818)
||+.||||||+||||||++|++|+++|+ .+|+++++|||||+|.... +|..++++..
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~-----~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~--------------- 60 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALK-----QQGYSVAGYKPVQTGSEETAENSDALVLQRLS--------------- 60 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHH-----hCCCeeEEECceeeCCCCCCCCchHHHHHHhc---------------
Confidence 6889999999999999999999999994 8999999999999998765 4766666553
Q ss_pred ccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCC
Q 003466 113 SNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVV 192 (818)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~ 192 (818)
+..++|+. +|+|.|++|+|||+|++.| |+.+
T Consensus 61 -----------------~~~~~~~~-------------------------------~~py~f~~P~sPhlAa~~e-g~~I 91 (223)
T COG0132 61 -----------------GLDLSYEL-------------------------------INPYRFKEPLSPHLAAELE-GRTI 91 (223)
T ss_pred -----------------CCCccccc-------------------------------ccceecCCCCCcHHHHhhc-CCcc
Confidence 33333444 8899999999999999999 9999
Q ss_pred ChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003466 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (818)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (818)
+.+++...+.++.+. +|++|||||||+++|++++.+..||++.+++|||||+..++|+|||++++.+
T Consensus 92 ~~~~l~~~l~~l~~~-------------~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt~e 158 (223)
T COG0132 92 DLEKLSQGLRQLLKK-------------YDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVE 158 (223)
T ss_pred cHHHHHHHHHhhhcc-------------cCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHHHHH
Confidence 999999998887755 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCCEEe-cCCCCCCC
Q 003466 273 SLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDS 317 (818)
Q Consensus 273 ~l~~~~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (818)
+++++|+++.|||+|+..+. ....+++.+ +.|++| +|+.++..
T Consensus 159 al~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~--~~p~~g~~p~~~~~~ 208 (223)
T COG0132 159 ALRARGLPLAGWVANGINPELDHYAEINATLLKRI--GAPLLGIIPYLPESE 208 (223)
T ss_pred HHHHCCCCEEEEEEccCCCchhHHHHHHHHHHHhc--CCCccccccCCcccc
Confidence 99999999999999998321 222455666 999999 99977743
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=344.03 Aligned_cols=336 Identities=26% Similarity=0.358 Sum_probs=261.3
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +||||++|+|++++||+ ||.|.+|+.++++++.+.. ..+.++...+|+++|++
T Consensus 9 ~~~~~~~~~g~--~~~~~~g~----~~id~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 80 (379)
T TIGR00707 9 LPVKIVRGKGA--YVYDVNGK----EYLDFVAGIAVNSLGHA-HPKLVEALKEQLEKLVHVS-NLYYTEPQEELAEKLVE 80 (379)
T ss_pred CCccEEEeecC--EEEeCCCC----EEEEcCcchhhccCCCC-CHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHh
Confidence 46688899887 69999999 99999999999999999 9999999999999876533 23467889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+++ .+++++++||++|++.|++++ +.+++..| +.+.+|++++.+|||.+..+...++...+..
T Consensus 81 ~~g---~~~~~~~~sg~~a~~~a~~~~-~~~~~~~~-------------~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~ 143 (379)
T TIGR00707 81 HSG---ADRVFFCNSGAEANEAALKLA-RKYTGDKG-------------KEKKKIIAFENSFHGRTMGALSATGQPKYQK 143 (379)
T ss_pred hCC---CCEEEEeCCcHHHHHHHHHHH-HHHhhccC-------------CCCCeEEEECCCcCCccHHHHHhcCChhhhc
Confidence 987 469999999999999999988 66655321 2246899999999999988887776443221
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. ..+.. ....+ .+|||+ +.+++.+.
T Consensus 144 ~-~~~~~---------------~~~~~----------------~~~~d~------------------~~l~~~~~----- 168 (379)
T TIGR00707 144 G-FEPLV---------------PGFSY----------------APYNDI------------------ESLKKAID----- 168 (379)
T ss_pred c-CCCCC---------------CCcee----------------eCCCCH------------------HHHHHHhh-----
Confidence 1 00000 00000 124443 45666553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++|++||+ ++.+|+.+++.+++++|.++|++||+++|+||+++|||++|+++.++.+++.||++++||++++|
T Consensus 169 ---~~~~~v~~~p~-~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G 244 (379)
T TIGR00707 169 ---DETAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGG 244 (379)
T ss_pred ---hCeeEEEEEcc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcccccCC
Confidence 25789999998 99999888899999999999999999999999999999999877777789999999999999998
Q ss_pred ccccceeecchHHHhhccCChH-------------------HHH------------HHHHHHHHcC---CCeeEEEeeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LWD------------LELIQQISSH---RTVQRVVALGT 740 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~~------------~~l~~~l~~~---~~v~~vrg~Gl 740 (818)
+|+|++++++++++.+..... .+. +.+.+.+++. ..+..+++.|.
T Consensus 245 -~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~ 323 (379)
T TIGR00707 245 -VPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNYPNKEVRGKGL 323 (379)
T ss_pred -cccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhCCCCccccCce
Confidence 799999999999988764211 000 1122222221 11234667788
Q ss_pred EEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 741 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 741 ~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
++.+++..+ +..+++.|+++||++.|.+ +.+|++|++.+|++++++++++|++++
T Consensus 324 ~~~~~~~~~----------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 324 MLGIELEAP----------CKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred EEEEEecCc----------HHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 888887533 3578889999999999976 799999999999999999999998763
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=303.15 Aligned_cols=197 Identities=35% Similarity=0.469 Sum_probs=163.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCcccccccchh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (818)
|+|||+||+|++|||+||+||+++|. ++|.+|+|||||++|...+.|..++.+.+ ++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~-----~~g~~v~~~KPi~~~~~~d~d~~~~~~~~-~~----------------- 57 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALR-----RRGIKVGYFKPIQTGPEDDEDAELIRELF-GL----------------- 57 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHH-----HTTSEEEEEEEEEESCCCSSHHHHHHHHC-CT-----------------
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH-----hCCCceEEEeeeEecCCCCchHHHHHHHh-CC-----------------
Confidence 57999999999999999999999994 89999999999999988888988887765 32
Q ss_pred hhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChhHH
Q 003466 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (818)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i 197 (818)
+.+ ....++|.|.+|++|+++++.+ +..+.++++
T Consensus 58 --------------~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 91 (199)
T PF13500_consen 58 --------------SEP-------------------------------PDDPSPYTFDEPASPHLAAELE-GVDIDLERI 91 (199)
T ss_dssp --------------CCC-------------------------------HHHHECEEESSSS-HHHHHHHH-T----HHHH
T ss_pred --------------Ccc-------------------------------cccccccccCcccCHHHHhhcc-CCcccHHHH
Confidence 111 1236799999999999999998 777777777
Q ss_pred HHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhC
Q 003466 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR 277 (818)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~ 277 (818)
+ ++++.++ +|++||||+||+.+|...+.+|+|||+.|++|||||++.++|+++|+++++++++.+
T Consensus 92 ~--~~~l~~~-------------~D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~~~~~~~~ 156 (199)
T PF13500_consen 92 I--YKELAEE-------------YDVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRLGTINHTLLTIEALKQR 156 (199)
T ss_dssp H--HHHCHTT-------------TCEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESSTTHHHHHHHHHHHHHCT
T ss_pred H--HHHHhhc-------------CCEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 6 5666554 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccC-CCCCHHHHHHhhcCCCCEEe-cCCCCCCCcch
Q 003466 278 GYDVVAVVFEDH-GLVNEVPLMSYLRNRVPVLV-LPPLPQDSSND 320 (818)
Q Consensus 278 ~~~v~gvi~N~~-~~~~~~~l~~~~~~~~pvlg-iP~~~~~~~~~ 320 (818)
|+++.|||+|++ .+++.+++++.+ ++||+| ||+.+.+++|+
T Consensus 157 g~~v~GvI~N~~~~~~~~~~l~~~~--~i~vlg~iP~~~~L~~p~ 199 (199)
T PF13500_consen 157 GIRVLGVILNRVPEPENLEALREKS--GIPVLGVIPEDPDLSAPT 199 (199)
T ss_dssp TS-EEEEEEEECTCCHHHHHHHHHH--CCEECE---SSTT-----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHhC--CCCEEEECCCCcccccCC
Confidence 999999999998 556888999998 999999 99999998763
|
... |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=308.96 Aligned_cols=318 Identities=12% Similarity=0.024 Sum_probs=224.2
Q ss_pred EEEEeecCCeeEEEeCCcCccccceeecccccccccCC-CCCCHHHHHHHHHhhhhccc-c-c-C-CCCCChhHHHHHHH
Q 003466 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGH-V-M-F-PENVYEPALECAEL 451 (818)
Q Consensus 377 ~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lG-h~~hp~V~eAi~~q~~~~~~-~-~-~-~~~~~~~~~eLae~ 451 (818)
+.+++++|. ++||.||+ +||||.| +.++| |+ ||+|++|+++|++++++ . . . ....++++.+|+++
T Consensus 30 ~~~~~~~G~--~~~d~~g~----~~ld~~s---~~~lgl~~-~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~ 99 (402)
T PRK07505 30 LTVGEREGI--LITLADGH----TFVNFVS---CSYLGLDT-HPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEA 99 (402)
T ss_pred ceeeccCCc--cEEecCCc----eEEEeec---CCccCCCC-CHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHH
Confidence 467788886 79999999 9999998 67999 99 99999999999998752 1 1 1 11347889999999
Q ss_pred HHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 452 L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
|+++++ . ++++++||++||+.|++++.+... . +++.++|+++++|||+..+...
T Consensus 100 la~~~~---~-~~~~~~sG~~a~~~ai~~~~~~~~--~--------------~~~~~vi~~~~~~H~s~~~~~~------ 153 (402)
T PRK07505 100 LSELFG---A-SVLTFTSCSAAHLGILPLLASGHL--T--------------GGVPPHMVFDKNAHASLNILKG------ 153 (402)
T ss_pred HHHHhC---C-CEEEECChHHHHHHHHHHHHhccc--C--------------CCCCCEEEEchhhhHhHHhhhh------
Confidence 999987 3 788888999999999999832110 0 2356799999999984321100
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
.... .+ ...+ + +|+|. +.+++.+.
T Consensus 154 ~~~~--------------~~------~v~~--~--------------~~~d~------------------~~l~~~~~-- 177 (402)
T PRK07505 154 ICAD--------------ET------EVET--I--------------DHNDL------------------DALEDICK-- 177 (402)
T ss_pred hhhc--------------CC------eEEE--e--------------CCCCH------------------HHHHHHHh--
Confidence 0000 00 0011 1 14443 45666664
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecc--cCcccCCccchhcccCC-CCcEE---
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF--TGFWRLGVETTADLLGC-VPDIA--- 685 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~--TGfGRtG~~~a~e~~gv-~PDiv--- 685 (818)
....+++|+||+ +..|++.+ +++|+++|++||++||+||+| +||||+|++++.+++++ .||.+
T Consensus 178 -----~~~~~~vl~~p~-~~~G~~~~-----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~ 246 (402)
T PRK07505 178 -----TNKTVAYVADGV-YSMGGIAP-----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIA 246 (402)
T ss_pred -----cCCCEEEEEecc-cccCCcCC-----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEE
Confidence 234789999998 88866544 899999999999999999998 68999999888888998 78855
Q ss_pred -EecccccCCccccceee-cchHHHhhccCC--------h----H------H---HH--------HHHHHHHHcCCC--e
Q 003466 686 -CYGKLLTGGVIPLAATL-ATNAVFDSFVGD--------S----K------L---WD--------LELIQQISSHRT--V 732 (818)
Q Consensus 686 -tlgKgLggGy~PlsAvl-~~~~i~~~l~~~--------~----~------~---~~--------~~l~~~l~~~~~--v 732 (818)
++||++|+| .|.++ .++++++.+... . . . +. +.+.+.++.++. .
T Consensus 247 ~s~sK~~~~~---Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 323 (402)
T PRK07505 247 ASLGKAFGAS---GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIP 323 (402)
T ss_pred Eechhhhhcc---CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 799998853 13344 467777655321 0 0 0 11 122233322221 1
Q ss_pred eEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 733 QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 733 ~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
..+++.++++......+ ...+..+.+.|+++||++++. + +.|||+|++++|++|+++++++|+++
T Consensus 324 ~~~~g~~~~i~~~~~~~-------~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~ 396 (402)
T PRK07505 324 TEQSGSFLPIRLIYIGD-------EDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEI 396 (402)
T ss_pred hcCCCCCCCEEEEEeCC-------HHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHH
Confidence 34577777764432222 134667899999999999863 2 68999999999999999999999988
Q ss_pred HHH
Q 003466 805 LEE 807 (818)
Q Consensus 805 l~~ 807 (818)
+++
T Consensus 397 l~~ 399 (402)
T PRK07505 397 LDE 399 (402)
T ss_pred HHh
Confidence 754
|
|
| >PRK12374 putative dithiobiotin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=280.99 Aligned_cols=203 Identities=22% Similarity=0.227 Sum_probs=164.3
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCC------CCchHHHHHhccCCccccCCCcc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH------DSDSRFLFTKLPSLSLRRNFPSS 109 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~------~~d~~~~~~~~~~~~~~~~~~~~ 109 (818)
||++|||+||+|++|||+||++|+++| + ++|.+|+|||||++|+.. +.|..++.+.+
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l----~-~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~------------ 63 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQAL----A-SQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVS------------ 63 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH----H-HCCCeEEEECccccCCccCCCCCchHHHHHHHHhc------------
Confidence 577899999999999999999999999 4 899999999999998632 23344443332
Q ss_pred cccccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcC
Q 003466 110 LILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESG 189 (818)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~ 189 (818)
+.+.+++. ++||.|..+ .+++.+ +
T Consensus 64 --------------------~~~~~~~~-------------------------------~~p~~~~~~----~a~~~~-~ 87 (231)
T PRK12374 64 --------------------SIELPYEA-------------------------------VNPIALSEE----ESSVAH-S 87 (231)
T ss_pred --------------------CCCCCHHh-------------------------------ccCeecCCC----cChHHc-C
Confidence 23333332 667766554 445566 7
Q ss_pred CCCChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHH
Q 003466 190 GVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269 (818)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~ 269 (818)
..+..++|.+.++++.++ +|+||||||||+++|++......|+++.+++|||||++.++|++||+++
T Consensus 88 ~~i~~~~i~~~~~~l~~~-------------~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in~~lL 154 (231)
T PRK12374 88 CPINYTLMSNGLANLSEK-------------VDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALL 154 (231)
T ss_pred CcCCHHHHHHHHHHHHhh-------------CCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHHHHHH
Confidence 778889999999887655 9999999999999999888889999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEccCCC------CCHHHHHHhhcCCCCEEe-cCCCCCCCcchhhhhhh
Q 003466 270 AYESLKLRGYDVVAVVFEDHGL------VNEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWFD 326 (818)
Q Consensus 270 ~~~~l~~~~~~v~gvi~N~~~~------~~~~~l~~~~~~~~pvlg-iP~~~~~~~~~~~~~l~ 326 (818)
+.+.++.++++++|||+|++.+ ++.+.+++.. ++|++| ||+.+.+...++.+|++
T Consensus 155 t~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~--~~~~lg~iP~~~~~~~~~~~~~l~ 216 (231)
T PRK12374 155 TAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKL--PAPLIGELPYLPRAEQRELGQYID 216 (231)
T ss_pred HHHHHHhCCCcEEEEEEeCccCchhhhhhHHHHHHHhc--CCCEEEEeCCCCCCChHHHHhhcC
Confidence 9999999999999999999832 2345555555 899999 99998877555666653
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=290.87 Aligned_cols=298 Identities=12% Similarity=0.089 Sum_probs=220.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e 475 (818)
++|+|+| |+|||.+.||+|++|+++|++++++.. ..++.++.+.+|+++|++++|. ++++|++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~---~~~~~~~SG~~An~ 119 (406)
T PRK13393 46 EVTVWCS---NDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK---EAALLFTSGYVSNW 119 (406)
T ss_pred cEEEeec---ccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEeCCcHHHHH
Confidence 9999999 899999659999999999999987632 2234467899999999999973 79999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
+|++...+.+ +.++|+++..|||++..++..++.+...
T Consensus 120 ~ai~~l~~~~--------------------~g~~I~~~~~~H~s~~~~~~~~g~~~~~---------------------- 157 (406)
T PRK13393 120 AALSTLGSRL--------------------PGCVILSDELNHASMIEGIRHSRAEKRI---------------------- 157 (406)
T ss_pred HHHHHhhcCC--------------------CCCEEEEccchhHHHHHHHHHcCCeEEE----------------------
Confidence 9999541211 2368999999999998887665422100
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
++|+|. +.+++.++. ..+.++++|++|++ ++.+|.
T Consensus 158 ----------------------~~~~d~------------------~~l~~~l~~----~~~~~~~~v~~~~v-~~~~G~ 192 (406)
T PRK13393 158 ----------------------FRHNDP------------------ADLERKLSD----LDPHRPKLVAFESV-YSMDGD 192 (406)
T ss_pred ----------------------eCCCCH------------------HHHHHHHHh----ccCCCCEEEEEcCC-CCCCCc
Confidence 013442 344555542 12346789999998 899999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeeccc-Cc-ccCCccchhcccCCC--CcEE--Eeccccc--CCccccceeecchHH
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCV--PDIA--CYGKLLT--GGVIPLAATLATNAV 707 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv~--PDiv--tlgKgLg--gGy~PlsAvl~~~~i 707 (818)
+.+ +++|+++|++||+++|+||+|+ |+ |++|.++. +++++. +|++ +|||++| ||| +++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~-~~~~~~~~~~i~~~tlsKa~g~~GG~-----~~~~~~~ 262 (406)
T PRK13393 193 IAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIA-EREGLADRLTIIEGTLAKAFGVMGGY-----ITGSAAL 262 (406)
T ss_pred hhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchh-hhcCCCCCCeEEEEeCchhhcccCce-----eeCCHHH
Confidence 887 9999999999999999999997 76 89997664 777775 6887 9999998 665 6778887
Q ss_pred HhhccCCh--------H-------------HH-------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC
Q 003466 708 FDSFVGDS--------K-------------LW-------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 753 (818)
Q Consensus 708 ~~~l~~~~--------~-------------~~-------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~ 753 (818)
++.+.... . .+ .+.+.+.+++.+ ...+++.|.++.+.+.+.
T Consensus 263 ~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~i~~v~~~~~---- 337 (406)
T PRK13393 263 CDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAG-IPHLPNPSHIVPVMVGDP---- 337 (406)
T ss_pred HHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC-CCcCCCCCCeEEEEeCCH----
Confidence 76543210 0 00 011233343332 223467888888865321
Q ss_pred CCchHHHHHHHHHHHh-CCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLRE-DGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e-~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+++.|++ +||++++. | +++|++|++.+|++|+|+++++|+++++++.
T Consensus 338 ----~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~~ 398 (406)
T PRK13393 338 ----VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARLG 398 (406)
T ss_pred ----HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhcC
Confidence 346778899987 59999751 3 7899999999999999999999999987764
|
|
| >PRK00090 bioD dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=267.75 Aligned_cols=203 Identities=29% Similarity=0.381 Sum_probs=169.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCC---CCchHHHHHhccCCccccCCCcccccccc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH---DSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (818)
.|||+||+|++|||+||++|+++|+ ++|++|+|||||++|... +.|..++.+.+ ++
T Consensus 1 ~i~I~~t~t~~GKT~vs~~L~~~l~-----~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~-~~--------------- 59 (222)
T PRK00090 1 RLFVTGTDTDVGKTVVTAALAQALR-----EAGYSVAGYKPVQSGCEETDRNGDALALQRLS-GL--------------- 59 (222)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH-----HcCCceEEEeeEecCCCCCCCcHHHHHHHHHc-CC---------------
Confidence 4899999999999999999999994 899999999999998652 34677666553 22
Q ss_pred hhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChh
Q 003466 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (818)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (818)
+.++ ..++++.|.+|+||++++..+ +..+..+
T Consensus 60 ----------------~~~~-------------------------------~~~~~~~~~~~~sp~~a~~~~-~~~~~~~ 91 (222)
T PRK00090 60 ----------------PLDY-------------------------------EDVNPYRFEEPLSPHLAAALE-GVAIDLE 91 (222)
T ss_pred ----------------CCCh-------------------------------hhcCceeeCCCCCHHHHHHHh-CCCCCHH
Confidence 1111 226789999999999999988 8788899
Q ss_pred HHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 003466 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (818)
Q Consensus 196 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~ 275 (818)
++.+.++++.++ +|++||||+||+.+|...+.+++|+++.+++|||+|++.+++++++++.+++.++
T Consensus 92 ~i~~~~~~l~~~-------------~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~ 158 (222)
T PRK00090 92 KISAALRRLAQQ-------------YDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIR 158 (222)
T ss_pred HHHHHHHHHHhh-------------CCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 999999886655 9999999999999998777899999999999999999999999999999999999
Q ss_pred hCCCcEEEEEEccCCCC-------CHHHHHHhhcCCCCEEe-cCCCCCCCcchhhhhh
Q 003466 276 LRGYDVVAVVFEDHGLV-------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWF 325 (818)
Q Consensus 276 ~~~~~v~gvi~N~~~~~-------~~~~l~~~~~~~~pvlg-iP~~~~~~~~~~~~~l 325 (818)
.+++++.|+|+|++... +.+.+++.+ ++|++| ||+++......+.+++
T Consensus 159 ~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~--gi~vlg~ip~~~~~~~~~~~~~~ 214 (222)
T PRK00090 159 ARGLPLAGWVANGIPPEPGLRHAENLATLERLL--PAPLLGELPYLAEAELAAAAEYL 214 (222)
T ss_pred HCCCCeEEEEEccCCCcchhHHHHHHHHHHHHc--CCCeEEecCCCCCcchHHHHhhC
Confidence 99999999999998432 455666666 999999 9997664433444443
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=285.67 Aligned_cols=311 Identities=9% Similarity=0.044 Sum_probs=229.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e 475 (818)
++|||+| |+|||.+.||+|++|+.+++++++... ..++.+..+.+|+++|+++++ .+.+++++||+.||.
T Consensus 103 ~~l~FsS---ndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g---~e~all~sSGy~AN~ 176 (476)
T PLN02955 103 KLLLFSG---NDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK---KEDCLVCPTGFAANM 176 (476)
T ss_pred eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC---CCcEEEECChHHHHH
Confidence 8999999 999999889999999999999998643 334567899999999999998 479999999999999
Q ss_pred HHHHHHHHHhhh---cccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 476 IALKMAFRKFSF---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 476 ~ALklA~r~~t~---~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
+++... -.... ..+. ...++..+|..|...|.+...++.++....- .
T Consensus 177 ~~i~aL-~~~~~~~~~~~~----------~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~-a------------------ 226 (476)
T PLN02955 177 AAMVAI-GSVASLLAASGK----------PLKNEKVAIFSDALNHASIIDGVRLAERQGN-V------------------ 226 (476)
T ss_pred HHHHHH-hhcccccccccc----------ccCCCCcEEEEeccchHHHHHHHHhccccCC-c------------------
Confidence 999865 10000 0000 0023567899999999999998887632100 0
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
..+. +.|||+ +.|++.|+. ..++.+.||+|+| .++
T Consensus 227 -------~~~~--------------f~HND~------------------~~Le~~L~~-----~~~~~~~Vv~EgV-~Sm 261 (476)
T PLN02955 227 -------EVFV--------------YRHCDM------------------YHLNSLLSS-----CKMKRKVVVTDSL-FSM 261 (476)
T ss_pred -------eEEE--------------eCCCCH------------------HHHHHHHHh-----CCCCceEEEEeCC-CCC
Confidence 0000 128886 678888864 2345678999998 899
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc--cchhcccCCCCcE----EEeccccc--CCccccceeecc
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDI----ACYGKLLT--GGVIPLAATLAT 704 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PDi----vtlgKgLg--gGy~PlsAvl~~ 704 (818)
.|.+.| +++|+++|++||++||+||+| |+|+.|+ .+..+++|+.||+ .||||++| ||| ++++
T Consensus 262 dGdiap----L~eL~~L~~~~ga~LiVDEAH-~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~GGf-----i~gs 331 (476)
T PLN02955 262 DGDFAP----MEELSQLRKKYGFLLVIDDAH-GTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGF-----IACS 331 (476)
T ss_pred CCCcCC----HHHHHHHHHHcCcEEEEcccc-cCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccCce-----eecH
Confidence 998887 999999999999999999999 6778888 5667899998876 69999999 887 8999
Q ss_pred hHHHhhccCChH---------------------H------HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCch
Q 003466 705 NAVFDSFVGDSK---------------------L------WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 705 ~~i~~~l~~~~~---------------------~------~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~ 757 (818)
+++++.+...++ + .++++.++.+.+.......-...++.|.+.++
T Consensus 332 ~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~~G~~~~sPI~pI~ig~~-------- 403 (476)
T PLN02955 332 KKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKALSGVDISSPIISLVVGNQ-------- 403 (476)
T ss_pred HHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCH--------
Confidence 989888764332 1 11122222211111000000134455555433
Q ss_pred HHHHHHHHHHHhCCceEee--------cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLREDGVYMRP--------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 758 ~~a~~~~~~l~e~Gvlv~p--------~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..++++|+++||++.+ +..++|++.++.||++||++++++|.++.+...
T Consensus 404 ~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~ 463 (476)
T PLN02955 404 EKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFDN 463 (476)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 6788899999999999984 236899999999999999999999988866543
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=275.58 Aligned_cols=296 Identities=16% Similarity=0.126 Sum_probs=230.5
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeC
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSD 468 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~ 468 (818)
+|+ +++||+| |++||.+.||+|++|+.+++++++... ...++++.+.+|+++|++++| .+++++++
T Consensus 37 ~~~----~~~nf~S---NdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g---~e~al~f~ 106 (388)
T COG0156 37 DGR----KVLNFCS---NDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG---AEAALLFS 106 (388)
T ss_pred CCc----eeEeeec---cCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEEc
Confidence 477 9999999 999999989999999999999986543 235678999999999999998 47999999
Q ss_pred ChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCccc
Q 003466 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 469 SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~ 548 (818)
||+.||.+++... .++.++|..|.-.|.+...++.+++...+++
T Consensus 107 SGy~AN~~~i~~l----------------------~~~~dli~~D~lnHASiidG~rls~a~~~~f-------------- 150 (388)
T COG0156 107 SGFVANLGLLSAL----------------------LKKGDLIFSDELNHASIIDGIRLSRAEVRRF-------------- 150 (388)
T ss_pred ccchhHHHHHHHh----------------------cCCCcEEEEechhhhhHHHHHHhCCCcEEEe--------------
Confidence 9999999999977 4457899999999999999999987664332
Q ss_pred CCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
.|||+ ++||+.|++.. ..++ +-..|++|.|
T Consensus 151 ------------------------------~HnD~------------------~~Le~~l~~~~-~~~~-~~~~IvtegV 180 (388)
T COG0156 151 ------------------------------KHNDL------------------DHLEALLEEAR-ENGA-RRKLIVTEGV 180 (388)
T ss_pred ------------------------------cCCCH------------------HHHHHHHHhhh-ccCC-CceEEEEecc
Confidence 17775 67888887521 0122 5679999998
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc--cchhcccCCCCc---E--EEeccccc--CCccccc
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD---I--ACYGKLLT--GGVIPLA 699 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PD---i--vtlgKgLg--gGy~Pls 699 (818)
.+|.|.+.| |++|.+||++||+.|++||+| |+|-.|+ .+.++++|+.|+ | .||||+|| |||
T Consensus 181 -fSMdGdiAp----L~~l~~L~~ky~a~L~VDEAH-a~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~---- 250 (388)
T COG0156 181 -FSMDGDIAP----LPELVELAEKYGALLYVDEAH-AVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGY---- 250 (388)
T ss_pred -ccCCCCcCC----HHHHHHHHHHhCcEEEEEccc-cccccCCCCccHHHHhCCCCccceEEEEEchhhhcccCce----
Confidence 899999888 999999999999999999999 6777775 445678899765 3 39999999 566
Q ss_pred eeecchHHHhhccCChH---------------------HH------HHHHHHHH-------HcCCCeeEEEeeeeEEEEE
Q 003466 700 ATLATNAVFDSFVGDSK---------------------LW------DLELIQQI-------SSHRTVQRVVALGTLCAIE 745 (818)
Q Consensus 700 Avl~~~~i~~~l~~~~~---------------------~~------~~~l~~~l-------~~~~~v~~vrg~Gl~~~ie 745 (818)
+++++.+.+++...++ .+ ++++.+.. ...+.. .....-.++.+.
T Consensus 251 -v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~~~~-~~~s~s~I~pv~ 328 (388)
T COG0156 251 -IAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALGLV-LLPSESPIIPVI 328 (388)
T ss_pred -eeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCc-cCCCCCCeeeeE
Confidence 9999999999877644 11 11111111 111111 112223345555
Q ss_pred EecCcccCCCchHHHHHHHHHHHhCCceEee-------c-CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------L-GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-------~-g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
+.++ ..+..++..|+++||++.+ . ..+||+++++.||++||++++++|.+.
T Consensus 329 ~gd~--------~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 329 LGDE--------ERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred eCCH--------HHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 5543 6788999999999999984 2 389999999999999999999998764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=283.22 Aligned_cols=324 Identities=13% Similarity=0.112 Sum_probs=225.1
Q ss_pred EEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC----CCCCChhHHHHHHHH
Q 003466 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELL 452 (818)
Q Consensus 377 ~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~----~~~~~~~~~eLae~L 452 (818)
.++.++.|. +++ .+|+ +||||.|+ +++|+..||+|++|+++++++++..+. ..++++.+.+|+++|
T Consensus 94 ~~~~~~~G~--~i~-~~G~----~~id~~s~---~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~L 163 (481)
T PLN02822 94 PVLESAAGP--HTI-INGK----DVVNFASA---NYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKI 163 (481)
T ss_pred CceecCCCC--eEE-ECCc----eEEEeECC---CcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHH
Confidence 377788887 567 7999 99999984 456664499999999999999876322 235678999999999
Q ss_pred HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCC
Q 003466 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (818)
Q Consensus 453 ~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~ 532 (818)
+++++.+ +.++|+ +|+.++.+|++.. .++.++|.++..||+++..++.+++....
T Consensus 164 a~~~~~~--~~i~~s-~G~~a~~sai~a~----------------------~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~ 218 (481)
T PLN02822 164 AKFLGTP--DSILYS-YGLSTIFSVIPAF----------------------CKKGDIIVADEGVHWGIQNGLYLSRSTIV 218 (481)
T ss_pred HHHhCCC--CEEEEC-CHHHHHHHHHHHh----------------------CCCCCEEEEeCCccHHHHHHHHHcCCeEE
Confidence 9999853 456665 5666888887744 23457888999999998887777753211
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
. +.|||. +.++..+++..
T Consensus 219 ~--------------------------------------------~~~nd~------------------~~l~~~l~~~~ 236 (481)
T PLN02822 219 Y--------------------------------------------FKHNDM------------------ESLRNTLEKLT 236 (481)
T ss_pred E--------------------------------------------ECCCCH------------------HHHHHHHHHHh
Confidence 0 115553 12223332110
Q ss_pred CC-CCCCcE-EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc--CcccCCccchhcccCC---CCcEE
Q 003466 613 GL-KVSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGC---VPDIA 685 (818)
Q Consensus 613 ~~-~~~~~i-AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv---~PDiv 685 (818)
.. ....++ ++||+|++ +++.|.+.+ +++|+++|++||++||+||+|+ .+|++|.+ .++++|+ .|||+
T Consensus 237 ~~~~~~~~~~~~Ivve~i-~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~~v~~~~~dii 310 (481)
T PLN02822 237 AENKRKKKLRRYIVVEAI-YQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHFGVPIEKIDII 310 (481)
T ss_pred hhhcccCCCcEEEEEecC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHcCCCCCCCeEE
Confidence 00 001234 89999998 888998887 8999999999999999999998 56788876 5789998 78998
Q ss_pred E--eccccc--CCccccceeecchHHHhhccCChH---------------------HHH-------------HHHHHHHH
Q 003466 686 C--YGKLLT--GGVIPLAATLATNAVFDSFVGDSK---------------------LWD-------------LELIQQIS 727 (818)
Q Consensus 686 t--lgKgLg--gGy~PlsAvl~~~~i~~~l~~~~~---------------------~~~-------------~~l~~~l~ 727 (818)
+ |||++| ||| +++++++++.+..... .++ +.+.+.++
T Consensus 311 ~~s~sKalg~~GG~-----i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~ 385 (481)
T PLN02822 311 TAAMGHALATEGGF-----CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLS 385 (481)
T ss_pred EecchhhhhhCCeE-----EEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 8 889998 775 8899999987653221 011 11223333
Q ss_pred cCCCeeEE-EeeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec----------CCEEEEECCCCChHHHHH
Q 003466 728 SHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL----------GNVIYLMCGPCSSPEVCS 795 (818)
Q Consensus 728 ~~~~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~----------g~~ir~~ppl~~t~edId 795 (818)
+.+.+.-. -+.+.++.+.+........-+......+++.|+ ++||++.+. ...+|++.++.+|++||+
T Consensus 386 ~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~ 465 (481)
T PLN02822 386 DIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDIL 465 (481)
T ss_pred hcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHH
Confidence 33222111 134556666664220000012234677999998 889999963 136999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 003466 796 QLLLKLYQRLEEF 808 (818)
Q Consensus 796 ~~~~~l~~~l~~l 808 (818)
+++++|++++.++
T Consensus 466 ~~~~~l~~~~~~~ 478 (481)
T PLN02822 466 KASESLKRVAASV 478 (481)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=275.47 Aligned_cols=300 Identities=15% Similarity=0.146 Sum_probs=217.4
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC----CCCCChhHHHHHHHHHhccCCCCCCcEEEeC
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSD 468 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~ 468 (818)
+|+ ++++|.| |+|||.+.||+|++|+++|++++++... ..+.++.+.+|+++|+++++. +++++++
T Consensus 43 ~~~----~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~---~~~l~~~ 112 (402)
T TIGR01821 43 GAK----DVTVWCS---NDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK---ESALVFT 112 (402)
T ss_pred CCe----eEEEeEc---cCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC---CeEEEEC
Confidence 457 9999999 9999998899999999999999876431 234578899999999999973 6789999
Q ss_pred ChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCccc
Q 003466 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 469 SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~ 548 (818)
||++||+.|++++. .+ .+..+|..+..||+++..++..++.+...
T Consensus 113 sG~~an~~ai~~l~-~~-------------------~~~~~v~~~~~~h~s~~~~~~~~g~~~~~--------------- 157 (402)
T TIGR01821 113 SGYVANDATLATLA-KI-------------------IPGCVIFSDELNHASMIEGIRHSGAEKFI--------------- 157 (402)
T ss_pred chHHHHHHHHHHhh-CC-------------------CCCCEEEEcchHhHHHHHHHHHcCCeEEE---------------
Confidence 99999999999882 11 02367888888999887776655432100
Q ss_pred CCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
++|+|. +.+++.++. ..++++++|++|++
T Consensus 158 -----------------------------~~~~d~------------------~~l~~~l~~----~~~~~~~~v~~e~~ 186 (402)
T TIGR01821 158 -----------------------------FRHNDV------------------AHLEKLLQS----VDPNRPKIIAFESV 186 (402)
T ss_pred -----------------------------ECCCCH------------------HHHHHHHHh----ccCCCCeEEEEcCC
Confidence 013432 345566653 12346789999998
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-C-cccCCccchhcccCC--CCcEE--Eeccccc--CCccccce
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAA 700 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--tlgKgLg--gGy~PlsA 700 (818)
++..|.+.+ +++|+++|++||++||+||+|+ | +|++|.+. .+++++ .||++ ||||++| |||
T Consensus 187 -~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG~----- 255 (402)
T TIGR01821 187 -YSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGGI-AERDGLMHRIDIIEGTLAKAFGVVGGY----- 255 (402)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCcc-chhccCCCCCeEEEEechhhhccCCce-----
Confidence 899998886 9999999999999999999997 5 35666533 466676 47887 9999998 665
Q ss_pred eecchHHHhhccCC----------hH-----------H------HH-------HHHHHHHHcCCCeeEEEeeeeEEEEEE
Q 003466 701 TLATNAVFDSFVGD----------SK-----------L------WD-------LELIQQISSHRTVQRVVALGTLCAIEL 746 (818)
Q Consensus 701 vl~~~~i~~~l~~~----------~~-----------~------~~-------~~l~~~l~~~~~v~~vrg~Gl~~~iel 746 (818)
+++++++++.+... .. . +. +.+.+.+++++. .-+...|.++.+.+
T Consensus 256 i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~i~~i~~ 334 (402)
T TIGR01821 256 IAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALGI-PVIPNPSHIVPVII 334 (402)
T ss_pred eecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcCC-CcCCCCCCEEEEEe
Confidence 77888888765310 00 0 01 112333443322 11223566777755
Q ss_pred ecCcccCCCchHHHHHHHHHHHh-CCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
... ..+..+++.|++ +||++++. + +++|++|++.+|++||++++++|+++++++
T Consensus 335 ~~~--------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 335 GDA--------ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CCH--------HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 321 346678888875 59999762 3 689999999999999999999999998765
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=274.64 Aligned_cols=298 Identities=15% Similarity=0.103 Sum_probs=215.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC----CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e 475 (818)
++|||+| |++||++.||+|++|+.++++++++... ..+.++.+.+|+++|+++++. +++++++||++||+
T Consensus 47 ~~~~~~s---~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~---~~~~~~~sG~~an~ 120 (407)
T PRK09064 47 EVTVWCS---NDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK---EAALVFTSGYVSND 120 (407)
T ss_pred eEEEEEC---CCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC---CcEEEECcHHHHHH
Confidence 9999999 9999999899999999999999875321 123578899999999999873 67888999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.|++++. .+ . +..+|..+..+|++...++...+.+...
T Consensus 121 ~ai~~l~-~~--~-----------------~~~~i~~~~~~h~s~~~~~~~~~~~~~~---------------------- 158 (407)
T PRK09064 121 ATLSTLA-KL--I-----------------PDCVIFSDELNHASMIEGIRRSRCEKHI---------------------- 158 (407)
T ss_pred HHHHHHh-CC--C-----------------CCCEEEEeCcchHHHHHHHHHcCCcEEE----------------------
Confidence 9999872 11 1 1357777777788776666554322100
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
++|+|+ +.+++.++. ..++++++|++|++ +++.|.
T Consensus 159 ----------------------~~~~d~------------------~~le~~l~~----~~~~~~~~v~~~~v-~s~~G~ 193 (407)
T PRK09064 159 ----------------------FRHNDV------------------AHLEELLAA----ADPDRPKLIAFESV-YSMDGD 193 (407)
T ss_pred ----------------------ECCCCH------------------HHHHHHHHh----ccCCCCeEEEEeCC-CCCCcc
Confidence 013442 456666653 12246789999998 899998
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeeccc-C-cccCCccchhcccCC--CCcEE--Eeccccc--CCccccceeecchHH
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--tlgKgLg--gGy~PlsAvl~~~~i 707 (818)
+.+ +++|+++|++||++||+||+|+ | ||++|.++ .+++++ .||++ ||||++| ||| +++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG~-----~~~~~~~ 263 (407)
T PRK09064 194 IAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGVMGGY-----IAGSAAL 263 (407)
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhccCce-----EecCHHH
Confidence 886 9999999999999999999998 7 69999865 566776 57988 9999998 665 7888888
Q ss_pred HhhccCC--------hH-------------HH-------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC
Q 003466 708 FDSFVGD--------SK-------------LW-------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 753 (818)
Q Consensus 708 ~~~l~~~--------~~-------------~~-------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~ 753 (818)
++.+... +. .+ .+.+.+.+++.+. .-+...+.++.+.+...
T Consensus 264 ~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~iv~i~~~~~---- 338 (407)
T PRK09064 264 VDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAGI-PVMPNESHIVPVMVGDP---- 338 (407)
T ss_pred HHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCCCEEEEEeCCH----
Confidence 7754311 00 00 0112333443321 11123355666655321
Q ss_pred CCchHHHHHHHHHHHh-CCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLRE-DGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e-~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+++.|++ +||++++. + +++|++|++.+|++|+++++++|+++++++.
T Consensus 339 ----~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~~ 399 (407)
T PRK09064 339 ----EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLG 399 (407)
T ss_pred ----HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 346778888875 59999752 2 6899999999999999999999999987653
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=259.52 Aligned_cols=313 Identities=13% Similarity=0.120 Sum_probs=209.6
Q ss_pred eecccccccccCCCCCCHHHHHHHHHhhhhcccccCC----CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHH
Q 003466 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 402 lD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~----~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~A 477 (818)
|||.| |++||.+.||++++|+.+++++++..+.. .+.+..+.+|+++|+++.+. +..++++||+.|+.++
T Consensus 1 ~~f~s---~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~---e~al~~~sG~~a~~~~ 74 (392)
T PLN03227 1 LNFAT---HDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT---ESAILYSDGASTTSST 74 (392)
T ss_pred CCCcC---cCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHH
Confidence 57777 89999988999999999999998743311 22356899999999999984 5788889999999988
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
+... -+. .+.|..+...|+++..++.+++...
T Consensus 75 i~~l-----~~~-----------------GD~Vl~~~~~h~s~~~~~~l~~~~~-------------------------- 106 (392)
T PLN03227 75 VAAF-----AKR-----------------GDLLVVDRGVNEALLVGVSLSRANV-------------------------- 106 (392)
T ss_pred HHHh-----CCC-----------------CCEEEEeccccHHHHHHHHHcCCeE--------------------------
Confidence 7754 122 3456666677777766554432110
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC---CCCCcEEEEEEccccccCCC
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL---KVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~---~~~~~iAAVIvEPV~~g~gG 634 (818)
.. +.|||.+ .+ +.+.+.+...... ....+...|++||+ ++++|
T Consensus 107 ----~~--------------~~~~d~~----------~l-----~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v-~~~~G 152 (392)
T PLN03227 107 ----RW--------------FRHNDMK----------DL-----RRVLEQVRAQDVALKRKPTDQRRFLVVEGL-YKNTG 152 (392)
T ss_pred ----EE--------------eCCCCHH----------HH-----HHHHHHhhhhccccccccCCCcEEEEEcCC-cCCCC
Confidence 00 1144421 00 1111112100000 01235679999998 89999
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeeccc--CcccCCccchhcccCCCC----cEEEecccccCCcccc-ceeecchHH
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVP----DIACYGKLLTGGVIPL-AATLATNAV 707 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv~P----DivtlgKgLggGy~Pl-sAvl~~~~i 707 (818)
.+++ +++++++|++||++||+||+|+ ++|++|. |+++++|+.| ||+++|++ .|+.|+ |++++++++
T Consensus 153 ~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sls--k~~g~~gg~v~~~~~~ 225 (392)
T PLN03227 153 TLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLE--NAFGSVGGMTVGSEEV 225 (392)
T ss_pred cccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeech--hhhhccCcEEecCHHH
Confidence 9887 9999999999999999999997 4555665 6789999999 99988733 332245 456789888
Q ss_pred HhhccCCh----------H------------HH------------HHHHHHHHH--cCCCeeEEEee--------eeEEE
Q 003466 708 FDSFVGDS----------K------------LW------------DLELIQQIS--SHRTVQRVVAL--------GTLCA 743 (818)
Q Consensus 708 ~~~l~~~~----------~------------~~------------~~~l~~~l~--~~~~v~~vrg~--------Gl~~~ 743 (818)
++.+.... . .. .+.+.+.++ .++.+.++||. |.+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~ 305 (392)
T PLN03227 226 VDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIY 305 (392)
T ss_pred HHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEE
Confidence 86553110 1 00 012333343 45667888884 45799
Q ss_pred EEEecCcccCCC-chHHHHHHHHHHHhCCceEeecC------------CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 744 IELQAAGCNAGY-GSLYAASLLKKLREDGVYMRPLG------------NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 744 iel~~~~~~~~~-~~~~a~~~~~~l~e~Gvlv~p~g------------~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+++.+......+ +...+..+++.|+++|+++.+.+ .+||++.++.||+||||+++++|+++++++.
T Consensus 306 i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 306 LRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred EEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 998653211111 11234688999999999997532 3567777777799999999999999998763
|
|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-27 Score=269.28 Aligned_cols=201 Identities=17% Similarity=0.081 Sum_probs=152.7
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCC--------CCCchHHHHHhccCCccccCCC
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP--------HDSDSRFLFTKLPSLSLRRNFP 107 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~--------~~~d~~~~~~~~~~~~~~~~~~ 107 (818)
||++|||+||+||||||+||++|+++|+ ++|++|++||||++... +.+|..++++.+.++
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~-----~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~------- 68 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILA-----RRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGV------- 68 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCC-------
Confidence 5889999999999999999999999994 88999999999863211 123444444333221
Q ss_pred cccccccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHh-h
Q 003466 108 SSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-R 186 (818)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~-~ 186 (818)
.+ ...+||+.++ |.+|++++. .
T Consensus 69 -------------------------~~-------------------------------~~~i~P~~~~-~~sp~~a~~~~ 91 (488)
T PRK00784 69 -------------------------EP-------------------------------SVDMNPVLLK-PQSDRGSQVIV 91 (488)
T ss_pred -------------------------Cc-------------------------------hhccCCEEec-CCCCCcceEEE
Confidence 01 1226788664 788887652 1
Q ss_pred h-------------cCCCCChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCC-CcCC-CCCchhhHhhhCCC
Q 003466 187 E-------------SGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVA-SPGP-SGSLQCDLYRPFRL 251 (818)
Q Consensus 187 ~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~-~p~~-~~~~~~dla~~l~~ 251 (818)
+ .+..+..++|.+.++++.++ +|++||||+||++ .|+. .+.+++|||+.+++
T Consensus 92 ~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~~~-------------~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~~ 158 (488)
T PRK00784 92 QGKPVGNMDARDYHDYKPRLLEAVLESLDRLAAE-------------YDVVVVEGAGSPAEINLRDRDIANMGFAEAADA 158 (488)
T ss_pred cCccccccCHHHHhhcchhhHHHHHHHHHHHHhc-------------CCEEEEECCCCccccCcccCCchhHHHHHHcCC
Confidence 1 03557788999999887655 9999999999999 5654 35789999999999
Q ss_pred CEEEEEcCCCC-hHHHHHHHHHHHHhC-CCcEEEEEEccCCCC------CHHHHHHhhcCCCCEEe-cCCCCCCCcch
Q 003466 252 PGILVGDGRLG-GISGTISAYESLKLR-GYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSND 320 (818)
Q Consensus 252 pvilV~~~~~g-~i~~~~~~~~~l~~~-~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~~~~ 320 (818)
|||||++.++| ++++++.+.+++..+ +++|+|||+|++..+ +.++|++.+ ++||+| ||+.+.+..+.
T Consensus 159 PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~--gipvLG~iP~~~~L~~~~ 234 (488)
T PRK00784 159 PVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELT--GVPVLGVLPYLDDLRLPA 234 (488)
T ss_pred CEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCcCh
Confidence 99999999998 488888888888754 479999999998532 233355555 999999 99999887554
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=245.61 Aligned_cols=305 Identities=13% Similarity=0.072 Sum_probs=209.8
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHH
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAE 450 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae 450 (818)
.++++.++.|. +++|.+|+ +|||+. + ||+|++|+.+|+++++... ......+...+|++
T Consensus 44 ~~~~~~~~~g~--~~~~~~~~----~YL~l~----------~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~ 106 (407)
T PRK07179 44 KHLVLGKTPGP--DAIILQSN----DYLNLS----------G-HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK 106 (407)
T ss_pred ceEEeecCCCC--cEEEeecC----CccCCC----------C-CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH
Confidence 45566555555 68888888 888887 3 9999999999999874321 11122368899999
Q ss_pred HHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC
Q 003466 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (818)
Q Consensus 451 ~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~ 530 (818)
+|+++++. ++++|++||++||+.|++.+. ..| +.|..+.-.|.+...++...+..
T Consensus 107 ~la~~~g~---~~~~~~~sG~~An~~~l~~l~-----~~g-----------------~~v~~~~~~h~s~~~~~~~~g~~ 161 (407)
T PRK07179 107 KLAAFTGF---ESCLLCQSGWAANVGLLQTIA-----DPN-----------------TPVYIDFFAHMSLWEGVRAAGAQ 161 (407)
T ss_pred HHHHHhCC---CcEEEECCHHHHHHHHHHHhC-----CCC-----------------CEEEEECCcCHHHHHHHHHCCCe
Confidence 99999873 678999999999999999761 111 23344555665543333222111
Q ss_pred CCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 003466 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (818)
Q Consensus 531 ~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~ 610 (818)
.++ +.++|+ +.+++.+++
T Consensus 162 ------------------------------~~~--------------~~~~d~------------------~~l~~~l~~ 179 (407)
T PRK07179 162 ------------------------------AHP--------------FRHNDV------------------DHLRRQIER 179 (407)
T ss_pred ------------------------------EEE--------------ecCCCH------------------HHHHHHHHh
Confidence 000 013442 556677752
Q ss_pred CCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC--cccCCccchhcccCCC--CcEEE
Q 003466 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCV--PDIAC 686 (818)
Q Consensus 611 ~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG--fGRtG~~~a~e~~gv~--PDivt 686 (818)
.+.++|++|++ ++..|.+.| +++|+++|++||++||+||+|+. +|++|..+ .+.+|+. +|+++
T Consensus 180 -------~~~~lV~v~~v-~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~vdi~~ 246 (407)
T PRK07179 180 -------HGPGIIVVDSV-YSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGL-VAELGLTSRVHFIT 246 (407)
T ss_pred -------cCCeEEEECCC-CCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HHhcCCCCCCCEEE
Confidence 23578999998 899999887 89999999999999999999962 34555543 4567774 48864
Q ss_pred --ecccccCCccccceeecchHHHhhccC--------ChH-------------HH-------------HHHHHHHHHcCC
Q 003466 687 --YGKLLTGGVIPLAATLATNAVFDSFVG--------DSK-------------LW-------------DLELIQQISSHR 730 (818)
Q Consensus 687 --lgKgLggGy~PlsAvl~~~~i~~~l~~--------~~~-------------~~-------------~~~l~~~l~~~~ 730 (818)
++|++|+ ++|++++++++++.+.. ... .+ .+.+.+.+.+.+
T Consensus 247 ~S~sK~~g~---~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~g 323 (407)
T PRK07179 247 ASLAKAFAG---RAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSELG 323 (407)
T ss_pred eechHhhhc---cCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 7999975 48889999988776531 100 00 012333444443
Q ss_pred CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe----ec----CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 731 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL----GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 731 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~----p~----g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
. .+++.|.++.+++... ..+..+.+.|.++||++. |. .+.+|++++..+|++||++++++|+
T Consensus 324 ~--~v~~~~~i~~l~~~~~--------~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~ 393 (407)
T PRK07179 324 Y--NIRSESQIIALETGSE--------RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCR 393 (407)
T ss_pred C--CCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 3456788888876432 235667888999999843 32 3789999999999999999999999
Q ss_pred HHHHHHH
Q 003466 803 QRLEEFD 809 (818)
Q Consensus 803 ~~l~~l~ 809 (818)
+++++.+
T Consensus 394 ~~~~~~~ 400 (407)
T PRK07179 394 EARDEVD 400 (407)
T ss_pred HHHHhhC
Confidence 9887754
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=220.63 Aligned_cols=310 Identities=16% Similarity=0.162 Sum_probs=226.7
Q ss_pred EEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHH
Q 003466 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (818)
Q Consensus 377 ~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (818)
.|+.+.+|..+.+.-.++ .+|.|++ |+|||.+.||+|++|.++++++++... +.+++..++..|+.+|
T Consensus 50 rVi~s~q~p~i~v~G~~k-----~ilnFca---NnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~ki 121 (417)
T KOG1359|consen 50 RVITSRQGPTIQVKGSDK-----KILNFCA---NNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKI 121 (417)
T ss_pred eEEeecccceEEEecccc-----ceeeecc---cccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHH
Confidence 378888898655443343 6999998 999999889999999999999987543 5677899999999999
Q ss_pred HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCC
Q 003466 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (818)
Q Consensus 453 ~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~ 532 (818)
+++.+. +..++++|+.+||.+++-..+ . ..+-|..|.-.|.+.++++.+.. .|
T Consensus 122 Aqfh~r---ED~ilypscfdANag~feail-----~-----------------pedAvfSDeLNhASIIdGirLck--ry 174 (417)
T KOG1359|consen 122 AQFHGR---EDTILYPSCFDANAGAFEAIL-----T-----------------PEDAVFSDELNHASIIDGIRLCK--RY 174 (417)
T ss_pred HHHhCC---CceEEeccccccchHHHHHhc-----C-----------------hhhhhhccccccchhhhhhHHHh--hh
Confidence 999874 788899999999999998761 1 12557778889999988887763 11
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
+. -|. -.++..+..
T Consensus 175 ~h----------------------------------------------~dv------------------~~l~~~l~~-- 188 (417)
T KOG1359|consen 175 RH----------------------------------------------VDV------------------FDLEHCLIS-- 188 (417)
T ss_pred cc----------------------------------------------chh------------------HHHHHHHHH--
Confidence 11 110 112222221
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-C-cccCCccchhcccCC--CCcEE--E
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--C 686 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--t 686 (818)
.-..+...|++|.+ .++.|.+.| |++|.+|+++||+||.+||.|. | ||.||. +..|.+|+ ++||+ |
T Consensus 189 --a~k~r~klv~TDg~-FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGr-Gt~E~~~vm~~vdiinsT 260 (417)
T KOG1359|consen 189 --ACKMRLKLVVTDGV-FSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGR-GTAEEFGVMGDVDIINST 260 (417)
T ss_pred --hhhheEEEEEecce-eccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCC-ChHHHhCCCCcceehhhh
Confidence 22457889999998 788998888 9999999999999999999985 4 366664 44578887 57776 9
Q ss_pred eccccc---CCccccceeecchHHHhhccCChH----------------------HHH--------HHHHHHHHcCCCee
Q 003466 687 YGKLLT---GGVIPLAATLATNAVFDSFVGDSK----------------------LWD--------LELIQQISSHRTVQ 733 (818)
Q Consensus 687 lgKgLg---gGy~PlsAvl~~~~i~~~l~~~~~----------------------~~~--------~~l~~~l~~~~~v~ 733 (818)
+||++| ||| +.+++++++.+++.++ ++. +...+++++.-...
T Consensus 261 LgKAlGga~GGy-----ttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a 335 (417)
T KOG1359|consen 261 LGKALGGASGGY-----TTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA 335 (417)
T ss_pred hhhhhcCCCCCC-----ccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 999999 466 8999999988876654 000 00111111111111
Q ss_pred EEEeee---eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee--------cCCEEEEECCCCChHHHHHHHHHHHH
Q 003466 734 RVVALG---TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP--------LGNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 734 ~vrg~G---l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p--------~g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
.+.-.| .+..+.+.+ ..++..+++.|+.+|+++.. +..+||+..++.||+||||++++++.
T Consensus 336 GftIsg~~hPI~pv~lGd--------a~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~ 407 (417)
T KOG1359|consen 336 GFTISGASHPICPVMLGD--------ARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFS 407 (417)
T ss_pred CceecCCCCCccceeccc--------HHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHH
Confidence 122223 334444443 37899999999999999973 34899999999999999999999999
Q ss_pred HHHHHH
Q 003466 803 QRLEEF 808 (818)
Q Consensus 803 ~~l~~l 808 (818)
++.+-+
T Consensus 408 ~vgr~~ 413 (417)
T KOG1359|consen 408 EVGRFL 413 (417)
T ss_pred HHHHhh
Confidence 887654
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=239.31 Aligned_cols=302 Identities=13% Similarity=0.094 Sum_probs=207.8
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeC
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSD 468 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~ 468 (818)
+|+ ++++|.| |+++|.+.||+|++|+.++++++++.. .....++.+.+|+++|++++|. +.+++++
T Consensus 44 ~~~----~~~~~~s---n~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~---~~~i~~~ 113 (410)
T PRK13392 44 GPR----RVTIWCS---NDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK---ESALLFT 113 (410)
T ss_pred CCc----eEEEEEC---CCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC---CCEEEEC
Confidence 467 8999998 899999779999999999999987532 1122355789999999999983 5788889
Q ss_pred ChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCccc
Q 003466 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 469 SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~ 548 (818)
||++||+.+++...+. . + .++|..+..+|+++..++..+|.....
T Consensus 114 sG~~a~~~~i~~l~~~---~---------------~--g~~vi~~~~~h~s~~~~~~~~g~~~~~--------------- 158 (410)
T PRK13392 114 SGYVSNDAALSTLGKL---L---------------P--GCVILSDALNHASMIEGIRRSGAEKQV--------------- 158 (410)
T ss_pred cHHHHHHHHHHHHhcC---C---------------C--CCEEEEehhhhHHHHHHHHHcCCeEEE---------------
Confidence 9999999999955111 1 1 246777788999887766555432100
Q ss_pred CCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
++ ++|. +.+++.++. ...+++.+|++|++
T Consensus 159 ---------------~~--------------~~d~------------------~~l~~~l~~----~~~~~t~~v~i~~~ 187 (410)
T PRK13392 159 ---------------FR--------------HNDL------------------ADLEEQLAS----VDPDRPKLIAFESV 187 (410)
T ss_pred ---------------Ee--------------CCCH------------------HHHHHHHHh----ccCCCCEEEEEeCC
Confidence 00 2221 223444442 12346789999998
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-Cc-ccCCccchhcccCC--CCcEE--EecccccCCccccceee
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATL 702 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--tlgKgLggGy~PlsAvl 702 (818)
++..|.+.+ +++|+++|++||+++|+||+|+ |+ |+.|.++ .++.++ .+|++ +++|++|+ +.|.++
T Consensus 188 -~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~---~GG~~~ 258 (410)
T PRK13392 188 -YSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC---LGGYIA 258 (410)
T ss_pred -CCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc---ccchhh
Confidence 899998886 9999999999999999999998 54 6777654 355565 57877 99999863 113367
Q ss_pred cchHHHhhccCCh-----------H-------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEec
Q 003466 703 ATNAVFDSFVGDS-----------K-------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQA 748 (818)
Q Consensus 703 ~~~~i~~~l~~~~-----------~-------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~ 748 (818)
+++++++.+.... . .+ .+.+.+.++..+. .-....+.++.+.+..
T Consensus 259 ~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~i~~~~ 337 (410)
T PRK13392 259 ASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANGI-PVMPSPSHIVPVMVGD 337 (410)
T ss_pred cCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCCCEEEEEeCC
Confidence 7888877443110 0 00 0112233333321 1122345555554432
Q ss_pred CcccCCCchHHHHHHHHHHH-hCCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
. ..+..++++|+ ++||++.+. + ..+|+++++.+|++|+|+++++|+++++++
T Consensus 338 ~--------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 338 P--------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred H--------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 1 34667888887 679999862 2 689999999999999999999999988765
|
|
| >TIGR00347 bioD dethiobiotin synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-24 Score=210.20 Aligned_cols=165 Identities=28% Similarity=0.399 Sum_probs=140.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCC-CCchHHHHHhccCCccccCCCcccccccchhhh
Q 003466 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH-DSDSRFLFTKLPSLSLRRNFPSSLILSNSILFS 119 (818)
Q Consensus 41 ~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (818)
||+||++|+|||+++++|+++|. ++|++|++|||++++... +.|..++.+.+ +.
T Consensus 1 fI~~t~~~~GKT~va~~L~~~l~-----~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~-~~------------------- 55 (166)
T TIGR00347 1 FVTGTDTGVGKTVASSALAAKLK-----KAGYSVGYYKPVQTGIEKTNSDALLLQNIS-GT------------------- 55 (166)
T ss_pred CeecCCCCccHHHHHHHHHHHHH-----HCCCcEEEEEeeeeCCCCCchHHHHHHHHc-CC-------------------
Confidence 79999999999999999999994 899999999999998653 45566665543 11
Q ss_pred hHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChhHHHH
Q 003466 120 SLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIE 199 (818)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i~~ 199 (818)
..++ ...+++.+..|.+|+++...+ +.....+.+.+
T Consensus 56 ------------~~~~-------------------------------~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~i~~ 91 (166)
T TIGR00347 56 ------------ALDW-------------------------------DEVNPYAFALPLSPHIAADQE-GRPIDLEELSK 91 (166)
T ss_pred ------------CCch-------------------------------hccCCeeeCCCCChHHHHHHh-CCCCCHHHHHH
Confidence 0111 124577888899999988876 66788888999
Q ss_pred HHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCC
Q 003466 200 TLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279 (818)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~ 279 (818)
.++++.++ +|++||||+||+.+|+....+++|+++.+++|||||++.+.++++++..+.+.++.+++
T Consensus 92 ~~~~l~~~-------------~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~ 158 (166)
T TIGR00347 92 HLRTLEQK-------------YDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGL 158 (166)
T ss_pred HHHHHHhc-------------CCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCC
Confidence 99887655 99999999999999988788999999999999999999999999999999999999999
Q ss_pred cEEEEEEc
Q 003466 280 DVVAVVFE 287 (818)
Q Consensus 280 ~v~gvi~N 287 (818)
++.|+|+|
T Consensus 159 ~i~gvv~N 166 (166)
T TIGR00347 159 TLAGVILN 166 (166)
T ss_pred CeEEEEeC
Confidence 99999998
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor. |
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-24 Score=247.18 Aligned_cols=194 Identities=17% Similarity=0.093 Sum_probs=140.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCC----CC----CchHHHHHhccCCccccCCCcccc
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP----HD----SDSRFLFTKLPSLSLRRNFPSSLI 111 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~----~~----~d~~~~~~~~~~~~~~~~~~~~~~ 111 (818)
|||+||+|+||||+||++||+.| + ++|++|+||||+++... .+ ++...++..++++
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l----~-~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~----------- 64 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRIL----A-RRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGI----------- 64 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH----H-hCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCC-----------
Confidence 69999999999999999999999 4 89999999999853211 11 1222222222111
Q ss_pred cccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceeccc-------------cc
Q 003466 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEE-------------AV 178 (818)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 178 (818)
.|. ..+||+.|+. |+
T Consensus 65 ---------------------~~~-------------------------------~~~nPv~lk~~~~~~s~~i~~g~~~ 92 (475)
T TIGR00313 65 ---------------------EPS-------------------------------VHMNPILLKPKGNFTSQVIVHGRAV 92 (475)
T ss_pred ---------------------Cch-------------------------------hccCCEEeCcCCCCcCcEEEcCccc
Confidence 111 1134444444 45
Q ss_pred ChHHHHhhhc-CCCCChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCC--cCCCCCchhhHhhhCCCCEEE
Q 003466 179 SPHLAAERES-GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVAS--PGPSGSLQCDLYRPFRLPGIL 255 (818)
Q Consensus 179 ~p~~a~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~--p~~~~~~~~dla~~l~~pvil 255 (818)
+|+.+.+... +..+.+++|.+.+.++.++ +|++|||||||+++ +...+.+++++|+.+++||||
T Consensus 93 ~~~~a~~~~~~~~~~~~~~i~~~~~~l~~~-------------~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVIL 159 (475)
T TIGR00313 93 GDMNYQEYYKNKVDFFLKAIKESLEILARE-------------YDYVVIEGAGSPAEINLLKRDLANMRIAELANADAIL 159 (475)
T ss_pred CcCCHHHHhhhhhHHHHHHHHHHHHHHHhc-------------CCEEEEECCCCccccccCcCCchHHHHHHHhCCCEEE
Confidence 5665543321 3356788899999887655 99999999999987 244678999999999999999
Q ss_pred EEcCCCCh-HHHHHHHHHHHHhC-CCcEEEEEEccCCC------CCHHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 256 VGDGRLGG-ISGTISAYESLKLR-GYDVVAVVFEDHGL------VNEVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 256 V~~~~~g~-i~~~~~~~~~l~~~-~~~v~gvi~N~~~~------~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
|++.++|+ +++++.+++.+... +..++|||+|++.. ++.++|++++ ++|||| +|+.+.+
T Consensus 160 V~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~~--gipvLG~ip~~~~l 227 (475)
T TIGR00313 160 VADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEELT--GIPVLGVLPYDENL 227 (475)
T ss_pred EEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHhh--CCCEEEEecCCCcC
Confidence 99999885 56777788887754 36899999999843 2344556666 999999 9998876
|
|
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-24 Score=241.39 Aligned_cols=175 Identities=13% Similarity=0.124 Sum_probs=133.7
Q ss_pred CCCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCccccc
Q 003466 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLIL 112 (818)
Q Consensus 33 ~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (818)
+.-+|++|||+||+||+|||+||++|+++|+ ++ |.+||| |+ +..| ..
T Consensus 234 ~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~-----~~---v~~fK~---Gp-D~id------~~--------------- 280 (476)
T PRK06278 234 ERNKPKGIILLATGSESGKTFLTTSIAGKLR-----GK---VFVAKI---GP-DVRD------IV--------------- 280 (476)
T ss_pred hhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH-----hC---eEEEcC---CC-Chhh------cC---------------
Confidence 3355889999999999999999999999993 33 999995 42 1111 00
Q ss_pred ccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCC-
Q 003466 113 SNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGV- 191 (818)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~- 191 (818)
...+.|++|+||+.++..+ ...
T Consensus 281 --------------------------------------------------------p~~~~~~~~~sp~~a~n~~-~d~~ 303 (476)
T PRK06278 281 --------------------------------------------------------PSLYLLREKMTKYNSIKIG-DRGW 303 (476)
T ss_pred --------------------------------------------------------CcceecccccCChHHHhhc-CCcc
Confidence 2357899999999999976 333
Q ss_pred CChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCC---CchhhHhhhCCCCEEEEEcCCCChHHHHH
Q 003466 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG---SLQCDLYRPFRLPGILVGDGRLGGISGTI 268 (818)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~---~~~~dla~~l~~pvilV~~~~~g~i~~~~ 268 (818)
+..++..+.++. ..+|++|||||||+++|...+ .+++|||+.+++|||||++.++|+++|++
T Consensus 304 ~~~~~~~~~~~~---------------~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~g~i~~~~ 368 (476)
T PRK06278 304 SDVEEFLEFVKN---------------SDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKSGIEGAF 368 (476)
T ss_pred cCHHHHHHHHHh---------------cCCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEEEEcCCCChHHHHH
Confidence 555555554321 138999999999999995333 58899999999999999999999999998
Q ss_pred HHH----HHHHhCCCcEEEEEEccCC-CCCHHHHHHhhcC-CCCEEecCC
Q 003466 269 SAY----ESLKLRGYDVVAVVFEDHG-LVNEVPLMSYLRN-RVPVLVLPP 312 (818)
Q Consensus 269 ~~~----~~l~~~~~~v~gvi~N~~~-~~~~~~l~~~~~~-~~pvlgiP~ 312 (818)
.++ ++++.++++|+|||+|++. ..+.+.+++.++. ++||+|+|+
T Consensus 369 ~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 369 VESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 854 5666778999999999994 3344455554443 999999654
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-23 Score=228.68 Aligned_cols=314 Identities=10% Similarity=0.049 Sum_probs=209.4
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHH
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~ 451 (818)
|.++.+++|. +|+ .+|+ +||||.+ ++++||..+|++++++.+++++++... ...+..+...+++++
T Consensus 17 ~~~~~~~~g~--~~~-~~g~----~~id~~~---~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~ 86 (385)
T TIGR01825 17 IRVLESAQGP--RVR-VNGK----EVINLSS---NNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEK 86 (385)
T ss_pred ccccccCCCc--eEE-ECCc----eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHH
Confidence 4567788887 688 8999 9999987 456899339999999999998764321 223457889999999
Q ss_pred HHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 452 L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
+++..+. +..++.+||++|++.|++.+. . +.+.|..+..+|+....++.+.+...
T Consensus 87 l~~~~g~---~~~i~~~sG~~a~~~a~~~~~-----~-----------------~gd~vi~~~~~~~~~~~~~~~~g~~~ 141 (385)
T TIGR01825 87 LAKFKKT---EAALVFQSGFNTNQGVLSALL-----R-----------------KGDIVLSDELNHASIIDGLRLTKATK 141 (385)
T ss_pred HHHHhCC---CcEEEECcHHHHHHHHHHHhC-----C-----------------CCCEEEEEccccHHHHHHHHhcCCce
Confidence 9998873 467778899999999888651 1 12456677788887765554443210
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
.. .+ +.|. +.+++.+.+
T Consensus 142 ~~------------------------------~~--------------~~d~------------------~~l~~~l~~- 158 (385)
T TIGR01825 142 KI------------------------------YK--------------HADM------------------DDLDRVLRE- 158 (385)
T ss_pred EE------------------------------eC--------------CCCH------------------HHHHHHHHh-
Confidence 00 00 1121 334555542
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-C-cccCCccchhcccCCCCc----EE
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCVPD----IA 685 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv~PD----iv 685 (818)
....+.++|+++++ ++..|.+.+ +++|.++|++||+++|+||+++ | ++++|. +...++++.+| +.
T Consensus 159 ---~~~~~~~~v~~~~v-~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 229 (385)
T TIGR01825 159 ---NPSYGKKLIVTDGV-FSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKVDIQVG 229 (385)
T ss_pred ---hccCCCeEEEEecC-CcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCCcEEEE
Confidence 11246789999998 888887775 8999999999999999999995 3 555554 33455666665 36
Q ss_pred EecccccCCccccceeecchHHHhhccCC-------h-H-------------HHH-------------HHHHHHHHcCCC
Q 003466 686 CYGKLLTGGVIPLAATLATNAVFDSFVGD-------S-K-------------LWD-------------LELIQQISSHRT 731 (818)
Q Consensus 686 tlgKgLggGy~PlsAvl~~~~i~~~l~~~-------~-~-------------~~~-------------~~l~~~l~~~~~ 731 (818)
+++|++++ +.|.+++++++++.+... . . .+. +.+.+.+++.+.
T Consensus 230 s~sK~~~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 306 (385)
T TIGR01825 230 TLSKAIGV---VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKLGY 306 (385)
T ss_pred eccHHhhc---CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999963 235578888887755211 0 0 010 011222322211
Q ss_pred eeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-------cC-CEEEEECCCCChHHHHHHHHHHHHH
Q 003466 732 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------LG-NVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 732 v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-------~g-~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
.-+...+.++.+.+... ..+..+++.|+++||++.+ .+ +++|++|++.++++||++++++|++
T Consensus 307 -~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 377 (385)
T TIGR01825 307 -DTGGSETPITPVVIGDE--------KAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEK 377 (385)
T ss_pred -CCCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 11112233444443211 2356789999999999853 13 7899999999999999999999999
Q ss_pred HHHHH
Q 003466 804 RLEEF 808 (818)
Q Consensus 804 ~l~~l 808 (818)
+++++
T Consensus 378 ~~~~~ 382 (385)
T TIGR01825 378 VGKEL 382 (385)
T ss_pred HHHHh
Confidence 88654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=229.29 Aligned_cols=300 Identities=14% Similarity=0.045 Sum_probs=201.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-------cccCC----CCCChhHHHHHHHHHhccCCCCCCcEEEeC
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-------HVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSD 468 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-------~~~~~----~~~~~~~~eLae~L~~~~~~~~l~~v~f~~ 468 (818)
++|||.| |+|||++.||++.+++.+++.+++ ..... .+.++.+.+++++|+++++. +.+++++
T Consensus 5 ~~~~~~s---~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---~~~l~~~ 78 (370)
T PRK05937 5 LSIDFVT---NDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---PEAFIVP 78 (370)
T ss_pred ceEEeEC---CCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CeEEEEC
Confidence 7899999 999999989999999999998872 22211 22568899999999999984 5789999
Q ss_pred ChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCccc
Q 003466 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 469 SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~ 548 (818)
||+.||.+.+.. + .++.++|.++..+|+++..++...... .
T Consensus 79 sG~~a~~~~~~~----~------------------~~~~d~ii~d~~~H~sv~~~~~~~~~~--~--------------- 119 (370)
T PRK05937 79 SGYMANLGLCAH----L------------------SSVTDYVLWDEQVHISVVYSLSVISGW--H--------------- 119 (370)
T ss_pred ChHHHHHHHHHH----h------------------CCCCCEEEEEhhhhHHHHHHHHHcCCc--e---------------
Confidence 999999643332 1 123479999999999998877653210 0
Q ss_pred CCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
+.+| |+|+ +.+++.|+... ....+..+|+++++
T Consensus 120 -------------~~~~--------------~~d~------------------~~l~~~l~~~~--~~~~~~~~v~v~~v 152 (370)
T PRK05937 120 -------------QSFR--------------HNDL------------------DHLESLLESCR--QRSFGRIFIFVCSV 152 (370)
T ss_pred -------------EEec--------------CCCH------------------HHHHHHHHhhh--ccCCCcEEEEEecC
Confidence 0011 4543 45666665310 11133457889998
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-C-cccCCccchhcccC---CCCcEEEecccccCCccccceeec
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG---CVPDIACYGKLLTGGVIPLAATLA 703 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~g---v~PDivtlgKgLggGy~PlsAvl~ 703 (818)
+++.|.+.| +++|.++|+++|++||+||+|+ | +|++|+++.. .++ +.+|+.|+||++|+. .+++++
T Consensus 153 -~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~-~~~~~~~~~~~~tlsK~~g~~---G~~vl~ 223 (370)
T PRK05937 153 -YSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCH-SLGYENFYAVLVTYSKALGSM---GAALLS 223 (370)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHH-hhCCCCCcEEEEechhhhhcC---ceEEEc
Confidence 899999887 9999999999999999999997 4 6777765432 233 236889999999751 244677
Q ss_pred chHHHhhccC--Ch--------H-----------HHH-------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC
Q 003466 704 TNAVFDSFVG--DS--------K-----------LWD-------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 755 (818)
Q Consensus 704 ~~~i~~~l~~--~~--------~-----------~~~-------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~ 755 (818)
.+++.+.+.. .. . .+. +++.+..+.+......++.|....+.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~i~~~~------- 296 (370)
T PRK05937 224 SSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAAPGCVQPIFLPG------- 296 (370)
T ss_pred CHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEeCC-------
Confidence 6765544321 00 0 111 11111111110000111223334444432
Q ss_pred chHHHHHHHHHHHhCCceEee----cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLREDGVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 756 ~~~~a~~~~~~l~e~Gvlv~p----~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+.+.|.++||++.. ....+|++++..+|++|||+++++|.+.+++++
T Consensus 297 --~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~ 352 (370)
T PRK05937 297 --ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQ 352 (370)
T ss_pred --hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1245678889999999874 347899999999999999999999999998874
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=224.10 Aligned_cols=309 Identities=15% Similarity=0.133 Sum_probs=209.3
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHH
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLL 453 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~ 453 (818)
++++++|. ++++ +|+ +|||+.++ .++||..+|+|++|+++++++++... ...+..+...+++++++
T Consensus 25 ~~~~~~g~--~~~~-~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 94 (385)
T PRK05958 25 PREGGAGR--WLVV-DGR----RMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELA 94 (385)
T ss_pred ccccCCCc--eeEe-CCc----eEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHH
Confidence 67788887 6887 999 99999985 46898328999999999998865321 11234677899999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
++++. +.++++++|++++..+++.. . . +.+.|.+...+|+.+..++.+.+....
T Consensus 95 ~~~~~---~~~i~~~~g~~~~~~~l~~~----~-~-----------------~gd~V~~~~~~~~~~~~~~~~~g~~~~- 148 (385)
T PRK05958 95 EWFGA---ERALLFSSGYAANLAVLTAL----A-G-----------------KGDLIVSDKLNHASLIDGARLSRARVR- 148 (385)
T ss_pred HHhCC---CcEEEECcHHHHHHHHHHHh----C-C-----------------CCCEEEEeCccCHHHHHHHHhcCCceE-
Confidence 98873 57788889999999887654 1 1 224566677889877666555432210
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.+| .+| .+.+++.++.
T Consensus 149 -----------------------------~~~--------------~~d------------------~~~l~~~i~~--- 164 (385)
T PRK05958 149 -----------------------------RYP--------------HND------------------VDALEALLAK--- 164 (385)
T ss_pred -----------------------------EeC--------------CCC------------------HHHHHHHHHh---
Confidence 001 122 1455666652
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-C-cccCCccchh-cccCCCCc---EEEe
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTA-DLLGCVPD---IACY 687 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-G-fGRtG~~~a~-e~~gv~PD---ivtl 687 (818)
...+.++++++++ ++..|...+ +++|.++|++||+++|+||+|+ | +|++|..+.. ......+| +.++
T Consensus 165 --~~~~~~lvi~~~~-~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~ 237 (385)
T PRK05958 165 --WRAGRALIVTESV-FSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTL 237 (385)
T ss_pred --ccCCCeEEEEEec-ccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEec
Confidence 2235789999998 788887665 9999999999999999999994 3 4555554322 11233567 5689
Q ss_pred cccccCCccccceeecchHHHhhccCCh--------H----------HH---H-------------HHHHHHHHcCCCee
Q 003466 688 GKLLTGGVIPLAATLATNAVFDSFVGDS--------K----------LW---D-------------LELIQQISSHRTVQ 733 (818)
Q Consensus 688 gKgLggGy~PlsAvl~~~~i~~~l~~~~--------~----------~~---~-------------~~l~~~l~~~~~v~ 733 (818)
+|+++. +.|++++++++++.+.... . .+ . +.+.+.++..+ +.
T Consensus 238 sK~~~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~ 313 (385)
T PRK05958 238 GKALGS---SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALG-FQ 313 (385)
T ss_pred hhhccc---CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-CC
Confidence 999973 2366888888776542110 0 00 0 01222333332 22
Q ss_pred EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 734 ~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
-+...|.++.+.+... ..+.++++.|+++||++.+. .+.+|++|+..++++|+++++++|++++
T Consensus 314 ~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 314 LMDSQSAIQPLIVGDN--------ERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred cCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 2345677777766421 34667999999999999752 2689999999999999999999997753
|
|
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=228.44 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=140.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCcccccccchh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (818)
++++|.||+||+||||||+||+++| + ++|.+|.+|| . +|+..|+.|+.... |.
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL----~-~rg~~VqpfK---v-GPDYIDP~~H~~at-G~----------------- 53 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRAL----R-RRGLKVQPFK---V-GPDYIDPGYHTAAT-GR----------------- 53 (451)
T ss_pred CceEEecCCCCCcHHHHHHHHHHHH----H-hcCCcccccc---c-CCCccCchhhhHhh-CC-----------------
Confidence 4799999999999999999999999 4 9999999999 3 46778988766553 43
Q ss_pred hhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChhHH
Q 003466 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (818)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i 197 (818)
.|.|+..| ....+.|
T Consensus 54 -------------------------------------------------~srNLD~~----------------mm~~~~v 68 (451)
T COG1797 54 -------------------------------------------------PSRNLDSW----------------MMGEEGV 68 (451)
T ss_pred -------------------------------------------------ccCCCchh----------------hcCHHHH
Confidence 45667777 3455788
Q ss_pred HHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCC---CCCchhhHhhhCCCCEEEEEcCCCChH--HHHHHHHH
Q 003466 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SGSLQCDLYRPFRLPGILVGDGRLGGI--SGTISAYE 272 (818)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~---~~~~~~dla~~l~~pvilV~~~~~g~i--~~~~~~~~ 272 (818)
.+.|.+..++ .|+.||||+||++++.. +..+.+++||.|++|||||+|++..+- .+.+.++.
T Consensus 69 ~~~f~~~~~~-------------adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~ 135 (451)
T COG1797 69 RALFARAAAD-------------ADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFK 135 (451)
T ss_pred HHHHHHhcCC-------------CCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHHHHHHHHH
Confidence 8888887765 89999999999999833 357999999999999999999885443 33333444
Q ss_pred HHHhCCCcEEEEEEccC-CCCCHHHHHHhhcC--CCCEEe-cCCCCCCCcc
Q 003466 273 SLKLRGYDVVAVVFEDH-GLVNEVPLMSYLRN--RVPVLV-LPPLPQDSSN 319 (818)
Q Consensus 273 ~l~~~~~~v~gvi~N~~-~~~~~~~l~~~~~~--~~pvlg-iP~~~~~~~~ 319 (818)
.+. .+++|.|||+|++ ++.+.+.+++.++. ++||+| ||..+++.-|
T Consensus 136 ~fd-p~v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp 185 (451)
T COG1797 136 HFD-PDVNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELP 185 (451)
T ss_pred hcC-CCCceEEEEEecCCCHHHHHHHHHHhhhcCCCcEEEEecCCcccCCc
Confidence 443 3589999999999 56777777766653 799999 9999988866
|
|
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-23 Score=233.93 Aligned_cols=174 Identities=18% Similarity=0.216 Sum_probs=132.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCcccccccch
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (818)
|++|||+||+||+|||+||++|+++| + ++|.+|.+||| | ++..|+.++.+.. +.
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l----~-~~g~~v~~~K~---G-pd~iD~~~~~~~~-g~---------------- 54 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRAL----E-DAGYAVQPAKA---G-PDFIDPSHHEAVA-GR---------------- 54 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHH----H-HCCCeeEEEee---C-CCCCCHHHHHHHh-CC----------------
Confidence 67899999999999999999999999 4 89999999997 5 4467888776653 32
Q ss_pred hhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChhH
Q 003466 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (818)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (818)
.+.|+ +|+++. .+.
T Consensus 55 --------------------------------------------------~~~nl-------d~~~~~---------~~~ 68 (433)
T PRK13896 55 --------------------------------------------------PSRTL-------DPWLSG---------EDG 68 (433)
T ss_pred --------------------------------------------------CcccC-------ChhhCC---------HHH
Confidence 11121 222221 234
Q ss_pred HHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCCh--HHHHHHHHHHH
Q 003466 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISAYESL 274 (818)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~--i~~~~~~~~~l 274 (818)
|.+.+.+ ..+|++||||+||++++ ...+++|||+.+++|||||++.++|+ ++++++++..+
T Consensus 69 i~~~~~~---------------~~~d~~vIEG~gGl~dg--~~~s~adla~~l~~PviLVv~~~~g~~s~aa~l~g~~~~ 131 (433)
T PRK13896 69 MRRNYYR---------------GEGDICVVEGVMGLYDG--DVSSTAMVAEALDLPVVLVVDAKAGMESVAATALGFRAY 131 (433)
T ss_pred HHHHHHh---------------hcCCEEEEECCCccccC--CCCCHHHHHHHHCCCEEEEEcCcccHHHHHHHHHHHHHH
Confidence 5554432 12899999999999976 34789999999999999999999995 66668887444
Q ss_pred Hh---CCCcEEEEEEccCC-CCCHHHHHHhhcCCCCEEe-cCCCCCCCcc
Q 003466 275 KL---RGYDVVAVVFEDHG-LVNEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (818)
Q Consensus 275 ~~---~~~~v~gvi~N~~~-~~~~~~l~~~~~~~~pvlg-iP~~~~~~~~ 319 (818)
.. ++++|+|||+|++. +.+.+.+++.+++++||+| ||..+++.-+
T Consensus 132 ~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~~~i~vlG~lP~~~~~~~~ 181 (433)
T PRK13896 132 ADRIGRDIDVAGVIAQRAHGGRHADGIRDALPDELTYFGRIPPRDDLEIP 181 (433)
T ss_pred HHhccCCCcEEEEEEECCCcHHHHHHHHHhhhhcCceeEecccCCCCCCC
Confidence 33 57999999999995 4456666776655799999 9999887654
|
|
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-25 Score=243.30 Aligned_cols=216 Identities=18% Similarity=0.111 Sum_probs=172.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCC--CCchHHHHHhccCCccccCCCccccccc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH--DSDSRFLFTKLPSLSLRRNFPSSLILSN 114 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (818)
|+.+||.||.|++|||++++||||.| . ++|.+|++|||++...+. ..+...+.+.
T Consensus 1 ~~~iMv~GT~S~~GKS~~~aglcRi~----~-~~G~~V~PFK~QNMsLNs~it~~G~EIgra------------------ 57 (486)
T COG1492 1 MKAIMVQGTTSDAGKSFLVAGLCRIL----A-RRGYRVAPFKSQNMSLNSAITPGGGEIGRA------------------ 57 (486)
T ss_pred CCccEEEeccCCcchhhhhhhhhHHH----H-hcCCccCCCchhhcccccEECCCCcEEehh------------------
Confidence 56899999999999999999999999 4 999999999998775543 2232323332
Q ss_pred chhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCccccccccccee-cccccChHHHHhhhcCCCCC
Q 003466 115 SILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFA-WEEAVSPHLAAERESGGVVG 193 (818)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~a~~~~~~~~~~ 193 (818)
|..|+.+|...+...|+|+.++|. +|..+|+...++.....+. -. |.+ ++...
T Consensus 58 -----Q~~QA~Aa~i~p~v~mNPvLLKP~-sd~~sQVIv~G~~~G~~s~--------~~yy~~------------~~~~l 111 (486)
T COG1492 58 -----QALQALAAGIEPSVHMNPVLLKPC-SDTGSQVIVMGKDIGRKSA--------VEYYQE------------GKGLL 111 (486)
T ss_pred -----hhHHHHHcCCCCccccCCEEEeec-CCCceEEEEecccccccCh--------HHHHHH------------HHHHH
Confidence 566778888889999999999998 9999999998887777332 22 111 33456
Q ss_pred hhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCc--CCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHH-H
Q 003466 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASP--GPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS-A 270 (818)
Q Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p--~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~-~ 270 (818)
+..+.+.+.++.+. +|+|++||||+-+.. ...+..|+.+|+..++|||||+|++.|++++.+. |
T Consensus 112 ~~~v~~s~~~l~~~-------------~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~DIdRGGvfAsl~GT 178 (486)
T COG1492 112 WVAVKESLERLDRE-------------YDVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVGDIDRGGVFASLYGT 178 (486)
T ss_pred HHHHHHHHHHhhhc-------------ccEEEEecCCChhhcCcccccccceeeehhcCCCEEEEEeecccceeeeeeeh
Confidence 77888888887766 999999999965543 3367899999999999999999999988888777 6
Q ss_pred HHHHHh-CCCcEEEEEEccC------CCCCHHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 271 YESLKL-RGYDVVAVVFEDH------GLVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 271 ~~~l~~-~~~~v~gvi~N~~------~~~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
+++|.. ...+|+|+|+|++ -.+..++|++.+ ++|||| +||++..
T Consensus 179 ~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~t--g~~vlGv~P~~~~~ 230 (486)
T COG1492 179 LALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELT--GVPVLGVLPYLKDA 230 (486)
T ss_pred heecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHhh--CCeeEeeccccccc
Confidence 666653 3467999999999 245688899998 999999 9998874
|
|
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=231.60 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=129.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCcccccccchhh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILF 118 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (818)
+|||+||+||||||+||++|+++| + ++|++|++||| | ++..|..++.... +.
T Consensus 1 ~~~I~gT~t~vGKT~vt~~L~~~L----~-~~G~~V~~fK~---g-~d~~D~~~~~~~~-g~------------------ 52 (449)
T TIGR00379 1 RVVIAGTSSGVGKTTISTGIMKAL----S-RRKLRVQPFKV---G-PDYIDPMFHTQAT-GR------------------ 52 (449)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHH----H-HCCCceeEEcc---C-CCCCCHHHHHHHh-CC------------------
Confidence 489999999999999999999999 4 89999999998 3 3445766654442 21
Q ss_pred hhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChhHHH
Q 003466 119 SSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198 (818)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i~ 198 (818)
.+.++..| .+..+.|.
T Consensus 53 ------------------------------------------------~~~~ld~~----------------~~~~~~i~ 68 (449)
T TIGR00379 53 ------------------------------------------------PSRNLDSF----------------FMSEAQIQ 68 (449)
T ss_pred ------------------------------------------------chhhCCcc----------------cCCHHHHH
Confidence 00111111 13467888
Q ss_pred HHHHHHHhccccccccccccCCCCEEEEeCCCCCC---CcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH--H
Q 003466 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVA---SPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE--S 273 (818)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~---~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~--~ 273 (818)
+.|.++.++ +|++||||+||++ +|.....+++|||+.+++|||||++.+ ++++++.++. +
T Consensus 69 ~~~~~~~~~-------------~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~--~~~~t~~al~~~~ 133 (449)
T TIGR00379 69 ECFHRHSKG-------------TDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ--RLSRSAAAIVLGY 133 (449)
T ss_pred HHHHHhccc-------------CCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc--hHHHHHHHHHHHH
Confidence 888887655 8999999999999 566667899999999999999999987 4666666643 1
Q ss_pred -HHhCCCcEEEEEEccCCCC-----CHHHHHHhhcCCCCEEe-cCCCCCCCcc
Q 003466 274 -LKLRGYDVVAVVFEDHGLV-----NEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (818)
Q Consensus 274 -l~~~~~~v~gvi~N~~~~~-----~~~~l~~~~~~~~pvlg-iP~~~~~~~~ 319 (818)
...++++|+|||+|++..+ +.+.+++.+ ++||+| ||+.+.+..+
T Consensus 134 ~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~--gipvLG~IP~~~~l~~p 184 (449)
T TIGR00379 134 RSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLR--GIPILGVIPRQQDLKVP 184 (449)
T ss_pred HhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhC--CCCEEEEecCccccCCC
Confidence 2245899999999999432 233455555 999999 9999887654
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=231.53 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=132.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCcccccccc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (818)
+|++|||+||+||+|||++|++|+++|+ ++|++|.+||| | ++..|+.++.... +...
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~-----~~G~~V~~fK~---G-pd~~d~~~~~~~~-g~~~------------- 58 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALR-----RRGLRVQPFKV---G-PDYIDPAYHTAAT-GRPS------------- 58 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCCcceeec---C-CCcccHHHHHHHh-CCCc-------------
Confidence 4789999999999999999999999994 89999999998 4 3446766555432 2100
Q ss_pred hhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChh
Q 003466 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (818)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (818)
...+++. ...+
T Consensus 59 ---------------------------------------------------~~ld~~~------------------~~~~ 69 (451)
T PRK01077 59 ---------------------------------------------------RNLDSWM------------------MGEE 69 (451)
T ss_pred ---------------------------------------------------ccCCcee------------------CCHH
Confidence 0011222 2356
Q ss_pred HHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcC---CCCCchhhHhhhCCCCEEEEEcCCCCh--HHHHHHH
Q 003466 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPG---PSGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISA 270 (818)
Q Consensus 196 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~---~~~~~~~dla~~l~~pvilV~~~~~g~--i~~~~~~ 270 (818)
.|.+.|.++.++ +|++||||+||++++. ....+++|||+.+++|||||++.+..+ +++++.+
T Consensus 70 ~v~~~~~~~~~~-------------~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~~a~l~~~ 136 (451)
T PRK01077 70 LVRALFARAAQG-------------ADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQSAAALVLG 136 (451)
T ss_pred HHHHHHHHhccc-------------CCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHHHHHHHHH
Confidence 888888877655 8999999999999963 356889999999999999999988644 5555556
Q ss_pred HHHHHhCCCcEEEEEEccCCC-CCHHHHHHhhcC-CCCEEe-cCCCCCCCcc
Q 003466 271 YESLKLRGYDVVAVVFEDHGL-VNEVPLMSYLRN-RVPVLV-LPPLPQDSSN 319 (818)
Q Consensus 271 ~~~l~~~~~~v~gvi~N~~~~-~~~~~l~~~~~~-~~pvlg-iP~~~~~~~~ 319 (818)
+..+ .++++|+|||+|++.. ...+.+.+.++. ++||+| ||+.+.+..+
T Consensus 137 ~~~~-~~~i~i~GvI~N~v~~~~~~~~l~~~l~~~gipvLG~IP~~~~l~~p 187 (451)
T PRK01077 137 FATF-DPDVRIAGVILNRVGSERHYQLLREALERCGIPVLGALPRDAALALP 187 (451)
T ss_pred HHHh-CCCCCEEEEEEECCCChhHHHHHHHHHHhcCCCEEEEeeCCcccCCC
Confidence 6655 3478999999999943 333444444433 899999 9999887644
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=212.06 Aligned_cols=316 Identities=15% Similarity=0.149 Sum_probs=207.1
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccc-c---CCCCCChhHHHHHHHHH
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-M---FPENVYEPALECAELLL 453 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~-~---~~~~~~~~~~eLae~L~ 453 (818)
++.++.|. ++++.+|+ +||||.+ ++++|++.+|++++++.+++.+++.. + +..+..+.+.+|.+.|+
T Consensus 23 ~~~~~~~~--~~~~~~g~----~~i~~~~---~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia 93 (393)
T TIGR01822 23 IITSPQGA--DIRVADGR----EVLNFCA---NNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIA 93 (393)
T ss_pred ccccCCCc--eEEecCCc----eEEEeeC---CCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHH
Confidence 45566666 57888999 9999999 47899988999999999999886432 1 11234677899999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
++++. +.++.++||++|+.+++.... ..| +.|..+.-+|.+...++.+.+....
T Consensus 94 ~~~g~---~~~ii~~~~~~a~~~~~~~l~-----~~g-----------------d~vi~~~~~~~s~~~~~~~~~~~~~- 147 (393)
T TIGR01822 94 AFLGT---EDTILYASCFDANGGLFETLL-----GAE-----------------DAIISDALNHASIIDGVRLCKAKRY- 147 (393)
T ss_pred HHhCC---CcEEEECchHHHHHHHHHHhC-----CCC-----------------CEEEEeccccHHHHHHHHhcCCceE-
Confidence 99984 567777999999997776441 122 3344455566655444333221100
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
. +.++|+ +.+++.+.+..
T Consensus 148 -----------------------------~--------------~~~~d~------------------~~l~~~i~~~~- 165 (393)
T TIGR01822 148 -----------------------------R--------------YANNDM------------------ADLEAQLKEAR- 165 (393)
T ss_pred -----------------------------E--------------eCCCCH------------------HHHHHHHHhhh-
Confidence 0 002332 34555554310
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-Cc-ccCCccchhcccCC--CCcEE--Ee
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CY 687 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--tl 687 (818)
....++..|+++++ ++..|.+.+ +++|.++|++||++||+||+|. |+ |..|.. ..+..++ .+|++ ++
T Consensus 166 -~~~~~~~~v~~~~v-~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~di~~~s~ 238 (393)
T TIGR01822 166 -AAGARHRLIATDGV-FSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRG-SHELCGVMGRVDIITGTL 238 (393)
T ss_pred -hcCCCceEEEEeCC-ccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCc-hHHhcCCCCCCeEEEEEC
Confidence 11236789999998 788888775 8999999999999999999993 32 333332 2344555 36777 78
Q ss_pred cccccCCccccceeecchHHHhhccCChH---------------------HHH-------------HHHHHHHHcCCCee
Q 003466 688 GKLLTGGVIPLAATLATNAVFDSFVGDSK---------------------LWD-------------LELIQQISSHRTVQ 733 (818)
Q Consensus 688 gKgLggGy~PlsAvl~~~~i~~~l~~~~~---------------------~~~-------------~~l~~~l~~~~~v~ 733 (818)
+|+++| .++|.+++++++++.+..... .+. +.+.+.++..+. .
T Consensus 239 sK~l~g--~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~ 315 (393)
T TIGR01822 239 GKALGG--ASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAAGF-D 315 (393)
T ss_pred hHHhhC--CCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC-C
Confidence 999986 367888899888875532100 010 112222333221 1
Q ss_pred EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-------cC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------LG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 734 ~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-------~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
-....+.++.+.+.+. ..+..+++.|.++||++.. .+ .++|++++..+|++||++++++|.+++
T Consensus 316 ~~~~~~~~~~i~~~~~--------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 387 (393)
T TIGR01822 316 IKPADHPIIPVMLYDA--------VLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIG 387 (393)
T ss_pred CCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 1112344555544321 3466789999999999863 12 579999999999999999999999887
Q ss_pred HHH
Q 003466 806 EEF 808 (818)
Q Consensus 806 ~~l 808 (818)
+++
T Consensus 388 ~~~ 390 (393)
T TIGR01822 388 REL 390 (393)
T ss_pred HHh
Confidence 654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=210.03 Aligned_cols=316 Identities=16% Similarity=0.127 Sum_probs=206.5
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHH
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLL 453 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~ 453 (818)
.+++++|. ++||.+|+ .|||++++ .++||..+|++.++++++++++++.. +..+..+...++++.|+
T Consensus 27 ~~~~~~~~--~~~~~~g~----~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la 97 (397)
T PRK06939 27 VITSPQGA--DITVADGK----EVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLA 97 (397)
T ss_pred cccCCCCc--eEEecCCC----eEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHH
Confidence 34567776 69999999 99999884 56899549999999999998765321 12345678889999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
++++. +..+++++|++|+..+++... ..| ..||+.+ .+|.+...++...+...
T Consensus 98 ~~~g~---~~~i~~tsG~~a~~~~~~~l~-----~~g----------------d~vi~~~-~~~~~~~~~~~~~~~~~-- 150 (397)
T PRK06939 98 KFLGT---EDAILYSSCFDANGGLFETLL-----GKE----------------DAIISDA-LNHASIIDGVRLCKAKR-- 150 (397)
T ss_pred HHhCC---CcEEEEcChHHHHHHHHHHhC-----CCC----------------CEEEEEh-hhhHHHHHHHHhcCCce--
Confidence 98873 456677789999999887551 122 2455544 45544333333222110
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
+.+| ++|+ +.+++.+.+..
T Consensus 151 ----------------------------~~~~--------------~~d~------------------~~l~~~i~~~~- 169 (397)
T PRK06939 151 ----------------------------YRYA--------------NNDM------------------ADLEAQLKEAK- 169 (397)
T ss_pred ----------------------------EEeC--------------CCCH------------------HHHHHHHHhhh-
Confidence 0011 1221 33444443210
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-Cc-ccCCccchhcccCC--CCcEE--Ee
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CY 687 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--tl 687 (818)
....++++|+++++ ++..|...+ +++|.++|++||+++|+||++. |+ ++.|.. ....+++ .+|++ ++
T Consensus 170 -~~~~~~~~v~~~~v-~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~~i~~~S~ 242 (397)
T PRK06939 170 -EAGARHKLIATDGV-FSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVMDRVDIITGTL 242 (397)
T ss_pred -ccCCCCeEEEEecC-cCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCCCCCcEEEEEC
Confidence 11236789999998 788787544 9999999999999999999994 43 444442 3344565 46787 89
Q ss_pred cccccCCccccceeecchHHHhhccCC--------h--H-----------HHH-------------HHHHHHHHcCCCee
Q 003466 688 GKLLTGGVIPLAATLATNAVFDSFVGD--------S--K-----------LWD-------------LELIQQISSHRTVQ 733 (818)
Q Consensus 688 gKgLggGy~PlsAvl~~~~i~~~l~~~--------~--~-----------~~~-------------~~l~~~l~~~~~v~ 733 (818)
+|+++|+ ++|.+++++++++.+... . . .+. +.+.+.++.++. .
T Consensus 243 sK~~~g~--r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~ 319 (397)
T PRK06939 243 GKALGGA--SGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAAGF-T 319 (397)
T ss_pred HHHhCcc--CceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC-C
Confidence 9999754 688899999888765321 0 0 000 012233333321 1
Q ss_pred EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 734 ~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+.+.|.++.+.+... ..+..+++.|.++||.+.+. .+.+|+.++..++++||++++++|.+++
T Consensus 320 ~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~ 391 (397)
T PRK06939 320 LGPGEHPIIPVMLGDA--------KLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVG 391 (397)
T ss_pred cCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 1224455554443211 24667899999999998742 2579999999999999999999999988
Q ss_pred HHH
Q 003466 806 EEF 808 (818)
Q Consensus 806 ~~l 808 (818)
+++
T Consensus 392 ~~~ 394 (397)
T PRK06939 392 KEL 394 (397)
T ss_pred HHh
Confidence 664
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-22 Score=211.85 Aligned_cols=291 Identities=14% Similarity=0.077 Sum_probs=215.4
Q ss_pred cccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHh
Q 003466 410 TQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 410 ~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~ 485 (818)
|.|||.+.||+|.+|+.+.++++|... ..++++..+++|++.|+++..+ +.+++++|-+-||+..|-..-+
T Consensus 179 NDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK---~aALlFsSCfVANDstLftLak-- 253 (570)
T KOG1360|consen 179 NDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQK---EAALLFSSCFVANDSTLFTLAK-- 253 (570)
T ss_pred CccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcC---cceeeeeeeeeccchHHHHHHH--
Confidence 556776669999999999999987643 3456688899999999999874 6788888999999999987622
Q ss_pred hhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc
Q 003466 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (818)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (818)
.. ..-+|..|.+.|.+++.++.-++.+.+.+
T Consensus 254 -~l-----------------pgcei~SD~gNHASMI~GIrns~v~K~IF------------------------------- 284 (570)
T KOG1360|consen 254 -KL-----------------PGCEIFSDEGNHASMIQGIRNSRVPKHIF------------------------------- 284 (570)
T ss_pred -HC-----------------CCcEEeccccchHHHHHHhhhcCCcceee-------------------------------
Confidence 11 23689999999999988777765443221
Q ss_pred chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003466 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (818)
Q Consensus 566 ~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~ 645 (818)
.|||+ ++|+++|+. ..+.....|-+|.| .++.|.+.| +++
T Consensus 285 -------------rHND~------------------~hL~~lL~~----~~~svPKivAFEtV-hSM~Gavcp----lee 324 (570)
T KOG1360|consen 285 -------------RHNDL------------------DHLEQLLQS----SPKSVPKIVAFETV-HSMDGAVCP----LEE 324 (570)
T ss_pred -------------ccCCH------------------HHHHHHHHh----CCCCCCceEEEeee-eccCCCcCC----HHH
Confidence 27885 688889986 33455568889998 899999998 999
Q ss_pred HHHHHHhcCCcEEEeecccCcccCCccch--hcccCC--CCcEE--Eeccccc--CCccccceeecchHHHhhccCChH-
Q 003466 646 LVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDSK- 716 (818)
Q Consensus 646 LreLc~~~gilLI~DEV~TGfGRtG~~~a--~e~~gv--~PDiv--tlgKgLg--gGy~PlsAvl~~~~i~~~l~~~~~- 716 (818)
|.+++++||++..+|||| ..|-.|..++ -++-|| +-||+ |+||+.| ||| ++++..++|.++..+.
T Consensus 325 lcDvah~yGAiTFlDEVH-AVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVGGY-----IAat~~LvDmiRSyAaG 398 (570)
T KOG1360|consen 325 LCDVAHKYGAITFLDEVH-AVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVGGY-----IAATRKLVDMIRSYAAG 398 (570)
T ss_pred HHHHHHHhCceeeeehhh-hhccccCCCCCccccCCcchhhhhcccchhhhcccccce-----ehhhhhHHHHHHHhcCc
Confidence 999999999999999999 4666777543 567787 56887 8999999 898 8899999988765432
Q ss_pred --------------------HHH-H--------------HHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHH
Q 003466 717 --------------------LWD-L--------------ELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 717 --------------------~~~-~--------------~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
++. + .+++.+.+.++. -+..-..++.+.+. +..++.
T Consensus 399 FIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiP-Vi~~pSHIiPv~vg--------da~l~~ 469 (570)
T KOG1360|consen 399 FIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIP-VIPNPSHIIPVRVG--------DAALAK 469 (570)
T ss_pred eEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCc-ccCCCcceeeeecc--------CHHHHH
Confidence 110 0 011222222211 01112223333333 236778
Q ss_pred HHHHHHH-hCCceEee-------cC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLR-EDGVYMRP-------LG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 762 ~~~~~l~-e~Gvlv~p-------~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.++..|+ ++|||+.. .| .++|+.|+..||++-++.+++.+..++.++.
T Consensus 470 ~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~ 526 (570)
T KOG1360|consen 470 QASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 (570)
T ss_pred HHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 8888887 77999974 34 8999999999999999999999999998874
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=212.20 Aligned_cols=303 Identities=12% Similarity=0.076 Sum_probs=200.3
Q ss_pred ceeecccccccccCCCCC-CHHHHHHHHHhhhhcccccC----CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~-hp~V~eAi~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
++|+|.| +++||.+. ++.+.+++.+++++++..+. ..+.++.+.+|+++|+++++. +..+++++|+.+|
T Consensus 101 ~~~n~~s---~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~---~~ai~~~~G~~an 174 (489)
T PLN02483 101 RCLNLGS---YNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK---PAAIVFGMGYATN 174 (489)
T ss_pred eEEEeec---CCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC---CcEEEECCHHHHH
Confidence 8999999 99999873 57789999999999875321 123578999999999999984 4566668999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
..++... -. +.+.|..+..+|.+...++..+|....
T Consensus 175 ~~~i~al-----~~-----------------~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~---------------------- 210 (489)
T PLN02483 175 STIIPAL-----IG-----------------KGGLIISDSLNHNSIVNGARGSGATIR---------------------- 210 (489)
T ss_pred HHHHHHh-----CC-----------------CCCEEEEcchhhHHHHHHHHHcCCeEE----------------------
Confidence 9877754 11 224566777777776665555443211
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC-CCCCCCcEEEEEEccccccCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP-GLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~-~~~~~~~iAAVIvEPV~~g~g 633 (818)
.+ ++||++ .+ .+.+++.+.... ....+.....|++|++ .++.
T Consensus 211 --------~~--------------~~~d~~----------~l----e~~l~~~i~~~~p~t~~p~~k~livve~v-~s~~ 253 (489)
T PLN02483 211 --------VF--------------QHNTPS----------HL----EEVLREQIAEGQPRTHRPWKKIIVIVEGI-YSME 253 (489)
T ss_pred --------EE--------------eCCCHH----------HH----HHHHHhhhhccccccccCCceEEEEECCC-CCCC
Confidence 01 134320 11 122222221100 0011223468999998 7888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeeccc--CcccCCccchhcccCCCC---cEE--Eeccccc--CCccccceeecc
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVP---DIA--CYGKLLT--GGVIPLAATLAT 704 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv~P---Div--tlgKgLg--gGy~PlsAvl~~ 704 (818)
|.+.+ +++|.++|++||++||+||+|+ .+|++|.+ ..+++++.| ||+ +++|++| ||| ++++
T Consensus 254 G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~~~dI~~~SfSKs~g~~GG~-----i~~~ 323 (489)
T PLN02483 254 GELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPADVDIMMGTFTKSFGSCGGY-----IAGS 323 (489)
T ss_pred CcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcccCcEEEEecchhcccCceE-----EEcC
Confidence 87775 9999999999999999999996 25666654 457778765 666 9999997 554 8889
Q ss_pred hHHHhhccCCh--------H----------HH---H-H-----------H-------HHHHHHcCCCeeEEE--eeeeEE
Q 003466 705 NAVFDSFVGDS--------K----------LW---D-L-----------E-------LIQQISSHRTVQRVV--ALGTLC 742 (818)
Q Consensus 705 ~~i~~~l~~~~--------~----------~~---~-~-----------~-------l~~~l~~~~~v~~vr--g~Gl~~ 742 (818)
+++++.+.... . .+ . + + +.+.|++.+. .+. ..+.+.
T Consensus 324 ~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~--~v~~~~~sp~~ 401 (489)
T PLN02483 324 KELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGF--EVLGDNDSPVM 401 (489)
T ss_pred HHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCC--cccCCCCCCEE
Confidence 98888765310 0 01 0 0 0 1222333321 111 113444
Q ss_pred EEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 743 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 743 ~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.+.+... .....+++.|+++||++.+. + .++|+++++.+|+|||++++++|+++++.+.
T Consensus 402 ~l~l~~~--------~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~ 468 (489)
T PLN02483 402 PIMLYNP--------AKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVG 468 (489)
T ss_pred EEEECCH--------HHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4444322 34557899999999999842 1 6899999999999999999999999887764
|
|
| >cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-21 Score=183.09 Aligned_cols=88 Identities=26% Similarity=0.368 Sum_probs=79.8
Q ss_pred CEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC------CCHH
Q 003466 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL------VNEV 295 (818)
Q Consensus 222 d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~------~~~~ 295 (818)
|++|||||||+++|...+.+++|+|+.+++|+|+|++.++|+++|++.+++.++.+|+.+.|||.|++.. .+.+
T Consensus 40 d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~~~ 119 (134)
T cd03109 40 DFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNVE 119 (134)
T ss_pred CEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhhHH
Confidence 6799999999999999999999999999999999999999999999999999999999999999999732 2355
Q ss_pred HHHHhhcCCCCEEe-cC
Q 003466 296 PLMSYLRNRVPVLV-LP 311 (818)
Q Consensus 296 ~l~~~~~~~~pvlg-iP 311 (818)
.+++.+ ++|++| ||
T Consensus 120 ~i~~~~--gip~LG~IP 134 (134)
T cd03109 120 TIERLT--GIPVLGIVP 134 (134)
T ss_pred HHHHhc--CCCEEEeCC
Confidence 666666 999999 77
|
The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. |
| >PRK05632 phosphate acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-21 Score=230.09 Aligned_cols=187 Identities=16% Similarity=0.102 Sum_probs=140.8
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCcccccccc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (818)
||++|||+||+|++|||+||+||+++|. ++|.+|+|||||++++- +........
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~-----~~G~~Vg~fKPi~~~p~---~~~~~~~~~------------------ 54 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALE-----RKGVKVGFFKPIAQPPL---TMSEVEALL------------------ 54 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEeCCcccCCC---CHHHHHHHH------------------
Confidence 5789999999999999999999999994 89999999999998621 111110000
Q ss_pred hhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChh
Q 003466 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (818)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (818)
. .. +....++
T Consensus 55 -------------------------------------------------------------------~--~~-~~~~~~~ 64 (684)
T PRK05632 55 -------------------------------------------------------------------A--SG-QLDELLE 64 (684)
T ss_pred -------------------------------------------------------------------h--cc-CChHHHH
Confidence 0 00 1234567
Q ss_pred HHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCCh----HHHHHHHH
Q 003466 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG----ISGTISAY 271 (818)
Q Consensus 196 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~----i~~~~~~~ 271 (818)
+|.+.|+++.++ +|++||||++|.........+|+|||+.|++|||||++.+.++ ++++..+.
T Consensus 65 ~I~~~~~~l~~~-------------~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~si~d~~~~i~~~~ 131 (684)
T PRK05632 65 EIVARYHALAKD-------------CDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGNDTPEELAERIELAA 131 (684)
T ss_pred HHHHHHHHhccC-------------CCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCCChHHHHHHHHHHH
Confidence 888888776654 9999999998877655566789999999999999999999887 56777788
Q ss_pred HHHH-hCCCcEEEEEEcc--CCCCCHHHHHHhh------------------c-CCCCEEe-cCCCCCCCcchhhhhhhhh
Q 003466 272 ESLK-LRGYDVVAVVFED--HGLVNEVPLMSYL------------------R-NRVPVLV-LPPLPQDSSNDLMEWFDES 328 (818)
Q Consensus 272 ~~l~-~~~~~v~gvi~N~--~~~~~~~~l~~~~------------------~-~~~pvlg-iP~~~~~~~~~~~~~l~~~ 328 (818)
+.+. .++.++.|||+|+ +..+..+.+.+.+ . .++|++| ||+.+.+.++++.+..+.+
T Consensus 132 ~~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~~t~~~i~~~L 211 (684)
T PRK05632 132 SSFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIAPRVIDIAKHL 211 (684)
T ss_pred HHhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCCCCHHHHHHHc
Confidence 8877 7789999999999 4333322222222 1 2899999 9999999999777666655
Q ss_pred hhh
Q 003466 329 HNV 331 (818)
Q Consensus 329 ~~~ 331 (818)
...
T Consensus 212 ~~~ 214 (684)
T PRK05632 212 GAT 214 (684)
T ss_pred CCE
Confidence 433
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=200.71 Aligned_cols=304 Identities=13% Similarity=0.098 Sum_probs=198.2
Q ss_pred EeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC----CCCCChhHHHHHHHHHhc
Q 003466 380 DSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQG 455 (818)
Q Consensus 380 ~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~ 455 (818)
+++.|. ++. .+|+ +||||.++ +++|+..||+|++|+.+++.+++.... ..+..+...++.+.|+++
T Consensus 4 ~~~~~~--~~~-~~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 73 (360)
T TIGR00858 4 DRGPGP--EVV-RDGR----RLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEW 73 (360)
T ss_pred ccCCCC--eEE-ECCc----eEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHH
Confidence 456665 454 6899 99999996 579963299999999999988654211 112356788899999998
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCc
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~ 535 (818)
.+. +..+++++|++++..+++.+ . .+ .+.|.....+|+....++...+....
T Consensus 74 ~~~---~~~i~~~~G~~~~~~~l~~~----~-~~-----------------gd~v~~~~~~~~~~~~~~~~~g~~~~--- 125 (360)
T TIGR00858 74 KGT---EAALLFSSGYLANVGVISAL----V-GK-----------------GDLILSDALNHASLIDGCRLSGARVR--- 125 (360)
T ss_pred hCC---CCEEEECchHHHHHHHHHHh----C-CC-----------------CCEEEEEccccHHHHHHHHhcCCceE---
Confidence 863 46777789999999887654 1 11 23445556677766554443322100
Q ss_pred CCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 003466 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (818)
Q Consensus 536 ~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~ 615 (818)
.+| .+|. +.+++.+.. .
T Consensus 126 ---------------------------~~~--------------~~d~------------------~~l~~~~~~----~ 142 (360)
T TIGR00858 126 ---------------------------RYR--------------HNDV------------------EHLERLLEK----N 142 (360)
T ss_pred ---------------------------Eec--------------CCCH------------------HHHHHHHHH----c
Confidence 001 1121 445666652 1
Q ss_pred CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc--chhcccCCCCc-----EEEec
Q 003466 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD-----IACYG 688 (818)
Q Consensus 616 ~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PD-----ivtlg 688 (818)
...+.++|+++++ .+..|...+ +++|.++|++||+++|+||+++ +|+.+.. .....+++.|| +.+++
T Consensus 143 ~~~~~~~v~~~~~-~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~s~s 216 (360)
T TIGR00858 143 RGERRKLIVTDGV-FSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPEPVDIQVGTLS 216 (360)
T ss_pred ccCCCeEEEEeCC-ccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCccCCcEEEEech
Confidence 1135789999997 777786665 8999999999999999999995 5555432 23445677666 66999
Q ss_pred ccccCCccccceeecchHHHhhccCC--------hH----------HHH----------------HHHHHHHHcCCCeeE
Q 003466 689 KLLTGGVIPLAATLATNAVFDSFVGD--------SK----------LWD----------------LELIQQISSHRTVQR 734 (818)
Q Consensus 689 KgLggGy~PlsAvl~~~~i~~~l~~~--------~~----------~~~----------------~~l~~~l~~~~~v~~ 734 (818)
|++++ +.|++++++++++.+... .. .++ +.+.+.+++++. .-
T Consensus 217 K~~~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~ 292 (360)
T TIGR00858 217 KALGS---YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALGF-TL 292 (360)
T ss_pred hhhhc---cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCC-cc
Confidence 99875 225688888877654210 00 000 112233444432 11
Q ss_pred EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 735 VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 735 vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
....|.++.+.+... ..+.++++.|.++||++.+. ++.+|++++..++++|+++++++|+
T Consensus 293 ~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 293 MPSCTPIVPVIIGDN--------ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 123455666665321 23567899999999999741 2589999999999999999998763
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=184.92 Aligned_cols=296 Identities=13% Similarity=0.073 Sum_probs=186.3
Q ss_pred cceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 399 GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 399 ~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
|+||.|+| +.+|||.+||+|.+|++++++++++.. ...+..+...++.+.|+++++. +..++++||++|+
T Consensus 1 ~~~~~~~~---~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~iv~~sg~~a~ 74 (349)
T cd06454 1 KKVLNFCS---NDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EAALVFSSGYAAN 74 (349)
T ss_pred CCceeccc---CCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CCEEEeccHHHHH
Confidence 37999998 999999989999999999998865321 1124577889999999999874 4678889999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
..+++.+. ..| ..|++ ...+|+....++...|...
T Consensus 75 ~~~~~~~~-----~~g----------------d~Vl~-~~~~~~~~~~~~~~~g~~~----------------------- 109 (349)
T cd06454 75 DGVLSTLA-----GKG----------------DLIIS-DSLNHASIIDGIRLSGAKK----------------------- 109 (349)
T ss_pred HHHHHHhc-----CCC----------------CEEEE-ehhhhHHHHHHHHHcCCce-----------------------
Confidence 98887551 122 24444 5556765443332222110
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
+.+| ..| .+.+++.+.+. .++.+.++|+++++ ++..|
T Consensus 110 -------~~~~--------------~~~------------------~~~le~~i~~~---~~~~~~~~v~~~~~-~~~tG 146 (349)
T cd06454 110 -------RIFK--------------HND------------------MEDLEKLLREA---RRPYGKKLIVTEGV-YSMDG 146 (349)
T ss_pred -------EEec--------------CCC------------------HHHHHHHHHHh---hccCCCeEEEEecc-ccCCC
Confidence 0001 011 13455555431 11356789999997 78888
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccC---CCCcEE--EecccccCCccccceeecchHHH
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG---CVPDIA--CYGKLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~g---v~PDiv--tlgKgLggGy~PlsAvl~~~~i~ 708 (818)
...+ +++|.++|++||+++|+||++ ++|..+..+ ....++ ..+|++ +++|.++. +.|.++++++++
T Consensus 147 ~~~~----~~~i~~~~~~~~~~livD~a~-~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~ 218 (349)
T cd06454 147 DIAP----LPELVDLAKKYGAILFVDEAH-SVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELI 218 (349)
T ss_pred CccC----HHHHHHHHHHcCCEEEEEccc-cccccCCCCCChhhhccccccCcEEEeechhhhcc---cCCEEECCHHHH
Confidence 7765 899999999999999999999 455443211 111222 235765 68999874 335578888876
Q ss_pred hhccCCh-------H--------------HH-------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCC
Q 003466 709 DSFVGDS-------K--------------LW-------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG 754 (818)
Q Consensus 709 ~~l~~~~-------~--------------~~-------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~ 754 (818)
+.+.... . .+ .+.+.+.+.+++.. .+...+.++......+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~~~~~~~~~~~----- 292 (349)
T cd06454 219 DYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKELGFP-VGGSPSHIIPPLIGDD----- 292 (349)
T ss_pred HHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCCCcEEEEeCCC-----
Confidence 5432210 0 00 01122233333211 1111122222212211
Q ss_pred CchHHHHHHHHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
...+.++.+.|.++||.+.+. ++.+|+.++...+++|+++++++|+++
T Consensus 293 --~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 293 --PAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred --hHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 134567889999999999752 368999999989999999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=177.56 Aligned_cols=293 Identities=14% Similarity=0.068 Sum_probs=178.6
Q ss_pred cccccccCCCCCCHHHHHHHHHhhhhc-ccccC-----CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 406 ASWWTQGPDATLQIELARDMGYTAARF-GHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 406 sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~-----~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
++++....||+ +|++++++..|+ .. .+... ..+..+...+++++|+++++.+ .+.++++++|+++.+.+++
T Consensus 23 ~~l~~g~~~~~-~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~-~~~v~~~~~g~~~~~~~~~ 99 (398)
T cd00613 23 SFLGSGTYKHN-PPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMD-VANASLQDEATAAAEAAGL 99 (398)
T ss_pred ccccccccCCc-CcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC-ccceeccCchHHHHHHHHH
Confidence 45667789999 999999988877 32 11111 2234467789999999988743 3478888888888898888
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.+ +.. +++.+.|.+...|||++..++...+... .. ..
T Consensus 100 ~~-~~~------------------~~~gd~Vl~~~~~h~~~~~~~~~~~~~~--g~----------------------~~ 136 (398)
T cd00613 100 AA-IRA------------------YHKRNKVLVPDSAHPTNPAVARTRGEPL--GI----------------------EV 136 (398)
T ss_pred HH-Hhc------------------ccCCCEEEEcCccCcchHHHHHHhcccC--Cc----------------------EE
Confidence 87 321 1123466678889999988887765321 00 00
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..++.++.+ ..| .+.+++.+. +++++|++++. . ..|.+.
T Consensus 137 ~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~~viv~~~-~-~~G~~~-- 175 (398)
T cd00613 137 VEVPSDEGG-----------TVD------------------LEALKEEVS--------EEVAALMVQYP-N-TLGVFE-- 175 (398)
T ss_pred EEeccCCCC-----------CcC------------------HHHHHHhcC--------CCeEEEEEECC-C-CCceec--
Confidence 011111000 001 144555553 46889999986 5 567763
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccC---cccCCccchhcccCCCCcEEE--ecc---cccCCccccceee-cchHHHhh
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTG---FWRLGVETTADLLGCVPDIAC--YGK---LLTGGVIPLAATL-ATNAVFDS 710 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TG---fGRtG~~~a~e~~gv~PDivt--lgK---gLggGy~PlsAvl-~~~~i~~~ 710 (818)
.++++|+++|++||+++|+|++|++ ++++|. + .+|+++ ++| .+|+| .|.++++ +++++++.
T Consensus 176 -~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~------~--~~d~~~~s~~K~~~p~g~G-gp~~g~l~~~~~~~~~ 245 (398)
T cd00613 176 -DLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGE------Y--GADIVVGNLQKTGVPHGGG-GPGAGFFAVKKELVRF 245 (398)
T ss_pred -chHHHHHHHHHhcCCEEEEEeccccccCCCChHH------c--CCCEEEeeccccCCCCCCC-CCceeEEEEhhhhHhh
Confidence 5789999999999999999998853 223332 2 378876 344 45555 3655555 55667665
Q ss_pred ccC------------------------------C-h------H--------------------------HHHHHHHHHHH
Q 003466 711 FVG------------------------------D-S------K--------------------------LWDLELIQQIS 727 (818)
Q Consensus 711 l~~------------------------------~-~------~--------------------------~~~~~l~~~l~ 727 (818)
+.. . . . .+.+.+.+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~ 325 (398)
T cd00613 246 LPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLK 325 (398)
T ss_pred CCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 311 0 0 0 00011233444
Q ss_pred cCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee----cCCEEEEECCCCChHHHHHHHHHHH
Q 003466 728 SHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 728 ~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~g~~ir~~ppl~~t~edId~~~~~l 801 (818)
+.+...... .....+.+.+... ....+..+++.|+++||++.. .++.+|++|++.+|++|||+++++|
T Consensus 326 ~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 326 EVGGVLPFNGPFFHEFVLRLPPL------YGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred hcCCcccCCCCeeEEEEEEcCCc------chHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 444321010 0111122333210 013467789999999999875 3589999999999999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=164.64 Aligned_cols=325 Identities=11% Similarity=0.055 Sum_probs=210.3
Q ss_pred EEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCC-CHHHHHHHHHhhhhcccccCC----CCCChhHHHHHHH
Q 003466 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMFP----ENVYEPALECAEL 451 (818)
Q Consensus 377 ~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~-hp~V~eAi~~q~~~~~~~~~~----~~~~~~~~eLae~ 451 (818)
.++++-.-++=|-|--.|+ ..+.|++.| =++||+++ +-...+++.+.++++++.... .++++.+.++++.
T Consensus 116 ~l~dR~S~D~n~tfk~tG~--~~~~lNlgS---YNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l 190 (519)
T KOG1357|consen 116 DLMDRVSDDYNWTFKYTGT--RSRCLNLGS---YNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEEL 190 (519)
T ss_pred EeeeeeccCCCceEEeccc--eeeeeeecc---cccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHH
Confidence 3444433322233444454 123455555 44666431 445667777777888765422 2457899999999
Q ss_pred HHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 452 L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
.+++++. +.++.++.|..+|..-+... ..+...|..+.-.|++...++.++|+..
T Consensus 191 ~A~f~g~---e~a~vF~mGf~TNs~~~p~l----------------------~~~gsLIiSDelNHaSi~~GaRLSgAti 245 (519)
T KOG1357|consen 191 VARFLGV---EDAIVFSMGFATNSMNIPSL----------------------LGKGSLIISDELNHASLITGARLSGATT 245 (519)
T ss_pred HHHhcCC---cceEEEeccccccccCccee----------------------ecCCcceeeccccchheeccccccCceE
Confidence 9999985 56666678888777666644 2345678889999999999888887653
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
..+ .|||+ +.||++|.+.
T Consensus 246 RVf--------------------------------------------kHNdm------------------~~LEr~Lrd~ 263 (519)
T KOG1357|consen 246 RVF--------------------------------------------RHNDM------------------QGLERLLRDA 263 (519)
T ss_pred EEE--------------------------------------------ecCCH------------------HHHHHHHHHH
Confidence 221 27886 4455555542
Q ss_pred C----CCC-CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC--cccCCccchhcccCCCC--
Q 003466 612 P----GLK-VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVP-- 682 (818)
Q Consensus 612 ~----~~~-~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG--fGRtG~~~a~e~~gv~P-- 682 (818)
+ -.. .+.+.-.||+|.+ .++.|.++- |+++.++|++|.+.|++||+|++ .|++| .+.++++|+.|
T Consensus 264 I~~gqP~Thrp~kki~iivegi-ysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tG-rgvce~~g~d~~d 337 (519)
T KOG1357|consen 264 IVYGQPKTHRPWKKILICVEGI-YSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATG-RGVCEYFGVDPED 337 (519)
T ss_pred HhcCCCCcCCcchheeeeeccc-eeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCC-cceeeccCCCchh
Confidence 1 111 2556779999998 888898887 89999999999999999999983 45666 45678888866
Q ss_pred -cEE--Eeccccc--CCccccceeecchHHHhhccCChH-----------HH------------------HHHHHHHHHc
Q 003466 683 -DIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDSK-----------LW------------------DLELIQQISS 728 (818)
Q Consensus 683 -Div--tlgKgLg--gGy~PlsAvl~~~~i~~~l~~~~~-----------~~------------------~~~l~~~l~~ 728 (818)
||+ |+-|+.| ||| +.++++++++++..+. +. .++..+++.+
T Consensus 338 vDImMGtftKSfga~GGy-----iagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ 412 (519)
T KOG1357|consen 338 VDIMMGTFTKSFGAAGGY-----IAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAE 412 (519)
T ss_pred heeecceehhhcccccce-----ecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHh
Confidence 554 8999887 677 8999999998875543 00 0112223322
Q ss_pred CCCe--eEEEeeeeEEEEEEecCcccCC----CchHHHHHHHHHHHhCCceEee----c----CCEEEEECCCCChHHHH
Q 003466 729 HRTV--QRVVALGTLCAIELQAAGCNAG----YGSLYAASLLKKLREDGVYMRP----L----GNVIYLMCGPCSSPEVC 794 (818)
Q Consensus 729 ~~~v--~~vrg~Gl~~~iel~~~~~~~~----~~~~~a~~~~~~l~e~Gvlv~p----~----g~~ir~~ppl~~t~edI 794 (818)
.... ...+..|+++ ...+.++-. +...+...+.+.|+++++-+.. . ..+.||+.++.||.|++
T Consensus 413 ns~yfr~~l~~~gfiv---yG~~dSpVvplll~~~~k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~l 489 (519)
T KOG1357|consen 413 NSRYFRWELQKMGFIV---YGNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDL 489 (519)
T ss_pred hhHHHHHhhhcCcEEE---ecCCCCCcceeeecCcccccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHH
Confidence 2221 2233333322 222211111 1223345678889988665542 1 25779999999999999
Q ss_pred HHHHHHHHHHHHH
Q 003466 795 SQLLLKLYQRLEE 807 (818)
Q Consensus 795 d~~~~~l~~~l~~ 807 (818)
|++++.+++.-+.
T Consensus 490 d~~l~~i~~~g~~ 502 (519)
T KOG1357|consen 490 DRALEVIDRVGDE 502 (519)
T ss_pred HHHHHHHhhhchh
Confidence 9999998776533
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-14 Score=158.03 Aligned_cols=194 Identities=12% Similarity=0.035 Sum_probs=133.7
Q ss_pred cccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcc
Q 003466 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (818)
Q Consensus 410 ~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~ 489 (818)
+++||.+.||+|++|+.+++++++ +.++.+.+|+++|+++.+.+ .+.+++++||++||..++.... ..
T Consensus 27 ~~ylgl~~~~~~~~~~~~~~~~~~------g~~~~~~~Le~~lA~~~g~~-~e~ilv~~gg~~a~~~~~~al~-----~~ 94 (346)
T TIGR03576 27 YDLTGLAGGFKIDEEDLELLETYV------GPAIFEEKVQELGREHLGGP-EEKILVFNRTSSAILATILALE-----PP 94 (346)
T ss_pred cccccCCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHcCCC-cceEEEECCHHHHHHHHHHHhC-----CC
Confidence 568888779999999999999985 35689999999999998743 2789999999999999998661 22
Q ss_pred cccccccCCCccccccceEEEE--EcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcch
Q 003466 490 EVLVDFLGKDTTEKCIELKVLA--LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (818)
Q Consensus 490 G~~~~~~~~~~~~~~~r~~II~--~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~ 567 (818)
| ..|+. .+..+|.+...++.+.|...+.
T Consensus 95 g----------------d~Vli~~~d~p~~~s~~~~~~l~ga~~~~---------------------------------- 124 (346)
T TIGR03576 95 G----------------RKVVHYLPEKPAHPSIPRSCKLAGAEYFE---------------------------------- 124 (346)
T ss_pred C----------------CEEEECCCCCCCchhHHHHHHHcCCEEec----------------------------------
Confidence 2 24443 3456888766666555432100
Q ss_pred hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHH
Q 003466 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (818)
Q Consensus 568 ~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~Lr 647 (818)
++|+ +.++. . .+..+|++++. ++.|.+. +...+++|.
T Consensus 125 ------------~~~l------------------~~l~~-~---------~~~~lIiitg~--s~~G~v~-~~~~L~~i~ 161 (346)
T TIGR03576 125 ------------SDEL------------------SELKK-I---------DGTSLVVITGS--TMDLKVV-SEEDLKRVI 161 (346)
T ss_pred ------------cCCH------------------HHHhh-C---------cCceEEEEECC--CCCCccc-CHHHHHHHH
Confidence 1111 11211 1 12356777773 5667766 578899999
Q ss_pred HHHHhcCCcEEEeecccCcccCCcc--chhcccCCCCcEE--EecccccCCccccceeecchHHHhhccC
Q 003466 648 KECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (818)
Q Consensus 648 eLc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~ 713 (818)
++|++||+++|+||++ +.|..|.. +....++ +|++ ++||+|+|. -+|.+++++++++.+..
T Consensus 162 ~la~~~~~~livDEAy-~~~~~~~~~~~~~~~~~--~divv~s~SKalaG~--r~G~v~~~~~li~~l~~ 226 (346)
T TIGR03576 162 KQAKSKEAIVLVDDAS-GARVRRLYGQPPALDLG--ADLVVTSTDKLMDGP--RGGLLAGRKELVDKIKS 226 (346)
T ss_pred HHHHHcCCEEEEECCc-cccccccCCCCCHHHcC--CcEEEeccchhcccc--ceEEEEeCHHHHHHHHH
Confidence 9999999999999999 44443321 1122334 4654 899998663 36679999999887654
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=153.19 Aligned_cols=306 Identities=14% Similarity=0.060 Sum_probs=181.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
+++|+.++.+. .. +|.+.+|+.+. +..... .+..+...+|.+.|+++++. +.+++++||++++..++.
T Consensus 6 ~~~~~~~~~~~----~~-~~~~~~a~~~~--~~~~~~--~~~~~~~~~l~~~la~~~~~---~~~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 6 RVVDLRSDTVT----KP-TDAMRAAMANA--EVDDDV--LGYDPTALRLEEEMAKIFGK---EAALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhhccccc----CC-CHHHHHHHHhc--cCCCcc--cCCCHHHHHHHHHHHHHhCC---ceeEEecCccHHHHHHHH
Confidence 67899886655 35 89999999864 111111 12356678999999999973 568899999999988887
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcc-c-cccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL-G-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~-~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
... ...| ..|+..+.+|.+... + .....|..
T Consensus 74 ~~~----~~~g----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~--------------------------- 106 (353)
T PLN02721 74 VHC----DVRG----------------SEVILGDNSHIHLYENGGISTLGGVH--------------------------- 106 (353)
T ss_pred HHc----cCCC----------------CeEEEcCccceehhcccchhhhcCce---------------------------
Confidence 651 1122 256766665421110 0 01111110
Q ss_pred cceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
.+.+|... + + .| .+.+++.+.+.. ..+..+.++|+++++ ++..|..
T Consensus 107 ---~~~v~~~~--------~--~~~d------------------~~~l~~~i~~~~-~~~~~~~~~v~l~~~-~~np~G~ 153 (353)
T PLN02721 107 ---PRTVKNNE--------D--GTMD------------------LDAIEAAIRPKG-DDHFPTTRLICLENT-HANCGGR 153 (353)
T ss_pred ---eEecCCCc--------C--CCcC------------------HHHHHHHHHhcc-CCCCCcceEEEEecc-ccccCCc
Confidence 00011000 0 0 01 145666664210 012246789999997 5554444
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCc--EEEecccccCCccccce-eecchHHHhhcc
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--IACYGKLLTGGVIPLAA-TLATNAVFDSFV 712 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD--ivtlgKgLggGy~PlsA-vl~~~~i~~~l~ 712 (818)
.+|.+++++|.++|++||+++|+||++. ++-..... .........| +++++|++++ |+|+ +++++++++.+.
T Consensus 154 ~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~ 229 (353)
T PLN02721 154 CLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA---PVGSVIVGSKSFIRKAK 229 (353)
T ss_pred cccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC---ceeeEEecCHHHHHhHH
Confidence 5589999999999999999999999984 33211000 0000111234 4689999974 5665 567777766421
Q ss_pred ---C----C----hH--------------HH------HHHHHHHHHcCCCee-EE-EeeeeEEEEEEecCcccCCCchHH
Q 003466 713 ---G----D----SK--------------LW------DLELIQQISSHRTVQ-RV-VALGTLCAIELQAAGCNAGYGSLY 759 (818)
Q Consensus 713 ---~----~----~~--------------~~------~~~l~~~l~~~~~v~-~v-rg~Gl~~~iel~~~~~~~~~~~~~ 759 (818)
. . .. .+ .+.+.+.+++.+.+. .+ ...+.++.+.+.... ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 303 (353)
T PLN02721 230 RLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGS------RIT 303 (353)
T ss_pred HHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCc------ccc
Confidence 1 0 00 00 012334445554331 11 222445556554210 012
Q ss_pred HHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+..+++.|.++||.+++.+ +.+|+++++.++++|+++++++|++++..
T Consensus 304 ~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 304 AEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred HHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 5678999999999999876 78999999899999999999999988754
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=154.21 Aligned_cols=295 Identities=13% Similarity=0.048 Sum_probs=170.5
Q ss_pred HHHHHHHHhhhhcccccC----C-----CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 420 ELARDMGYTAARFGHVMF----P-----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 420 ~V~eAi~~q~~~~~~~~~----~-----~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
.+.+|+.+++++++..+. . ...++...++.|.|+++++ .+.+.++++|++|+..++.... ..|
T Consensus 19 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g---~~~~~i~~g~~~a~~~~~~~l~-----~~g 90 (370)
T TIGR02539 19 VLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLG---MDEARVTHGAREGKFAVMHALC-----KEG 90 (370)
T ss_pred CCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhC---CCceEEECChHHHHHHHHHHhh-----CCC
Confidence 456667777776654321 1 1224467788888999998 4678889999999999887651 111
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
..|+ .+..-|.+.+.++...|.+... +|....
T Consensus 91 ----------------d~Vl-~~~~~h~s~~~~~~~~g~~~~~------------------------------~~~~~~- 122 (370)
T TIGR02539 91 ----------------DWVV-LDGLAHYTSYVAAERAGLNVKE------------------------------VPHTGH- 122 (370)
T ss_pred ----------------CEEE-ECCcccHHHHHHHHHcCCEEEE------------------------------EecCCc-
Confidence 2444 4555555555544444332111 110000
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
.+. ..| .+.+++.+.... .....+..+|+++-+ .+..|...+ +++|.++|
T Consensus 123 -----~~~-~~d------------------~~~l~~~l~~~~-~~~~~~~~lv~~~~p-~~~~G~~~~----l~~i~~la 172 (370)
T TIGR02539 123 -----PEY-KVD------------------PEGYGEVIEEVE-DESGKPPVLALLTHV-DGEYGNLPD----AGKVAKVC 172 (370)
T ss_pred -----ccC-CcC------------------HHHHHHHHHHhh-hccCCCcEEEEEECC-CCCCccccC----HHHHHHHH
Confidence 000 011 145556664210 001134567777754 677787776 89999999
Q ss_pred HhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccCCh-------------
Q 003466 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDS------------- 715 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~~------------- 715 (818)
++||+++|+||+|. +|..+.-+. ...+|++ +++|++++| .|+|.+++++++++.+....
T Consensus 173 ~~~~~~livDea~~-~g~~~~~~~----~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~ 246 (370)
T TIGR02539 173 REKGVPLLLNCAYT-VGRMPVSAK----EIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGC 246 (370)
T ss_pred HHcCCeEEEECccc-cCCcCCCHH----HcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhcccccCCccceeeeecc
Confidence 99999999999994 554332211 1236765 899999876 58899999999988765421
Q ss_pred -----H------HH---H-------------HHHHHHHHcCCCe-eEE-EeeeeEEEEEEecCcccCCCchHHHHHHHHH
Q 003466 716 -----K------LW---D-------------LELIQQISSHRTV-QRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKK 766 (818)
Q Consensus 716 -----~------~~---~-------------~~l~~~l~~~~~v-~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~ 766 (818)
. .+ . +.+.+.|++.+.. ..+ .....++.+++.........+...+..+.+.
T Consensus 247 ~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (370)
T TIGR02539 247 TSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEE 326 (370)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHH
Confidence 0 01 0 1122333333321 001 1112222233210000000011234568899
Q ss_pred HHhCCce-EeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 767 LREDGVY-MRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 767 l~e~Gvl-v~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
|+++||+ +++.. +.+|++. ..+|++|+++++++|++.+++
T Consensus 327 L~e~GI~~ir~~~~~~iRis~-~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 327 LKKRGIHGIRSGQTKYFKLSV-YGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred HHhCCCccccCCcceEEEEEe-cCCCHHHHHHHHHHHHHHHHh
Confidence 9999998 66643 5899997 468999999999999988765
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-13 Score=150.64 Aligned_cols=305 Identities=11% Similarity=0.018 Sum_probs=180.8
Q ss_pred ccCCCCCCHHHHHHHHHhhhhcccc-----cCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHh
Q 003466 411 QGPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 411 ~~lGh~~hp~V~eAi~~q~~~~~~~-----~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~ 485 (818)
.-+|.- .+++++|+.+....++.. .......+...++.++++++++. +.++|+++|++|+..|++...
T Consensus 27 ~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~---~~~~~~~g~t~a~~~al~~l~--- 99 (387)
T PRK09331 27 QRGGIL-TPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM---DEARVTHGAREGKFAVMHSLC--- 99 (387)
T ss_pred hcCCCC-CHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHhc---
Confidence 457877 899999999887544321 11122356788999999999984 678999999999999998661
Q ss_pred hhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc
Q 003466 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (818)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (818)
.+| .+|++- ...|-+...++...|.... .++.+
T Consensus 100 --~~g----------------d~Vlv~-~~~h~s~~~~~~~~G~~~~----------------------------~v~~~ 132 (387)
T PRK09331 100 --KKG----------------DYVVLD-GLAHYTSYVAAERAGLNVR----------------------------EVPKT 132 (387)
T ss_pred --CCC----------------CEEEEC-CCchHHHHHHHHHcCCEEE----------------------------EEeCc
Confidence 222 245554 4455555444433332110 01110
Q ss_pred -c-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHH
Q 003466 566 -E-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQ 643 (818)
Q Consensus 566 -~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl 643 (818)
+ .+ ..| .+.+++.+.... .....++.+|+++.+ .+..|...+ +
T Consensus 133 ~~~~~-----------~~d------------------~~~l~~~l~~~~-~~~~~~~~lV~l~~~-~~~tG~~~~----l 177 (387)
T PRK09331 133 GYPEY-----------KIT------------------PEAYAEKIEEVK-EETGKPPALALLTHV-DGNYGNLAD----A 177 (387)
T ss_pred cCcCC-----------CcC------------------HHHHHHHHHHhh-hccCCCCEEEEEECC-CCCCccccc----H
Confidence 0 00 111 145556664200 011246788888876 777787765 9
Q ss_pred HHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC---------
Q 003466 644 RILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD--------- 714 (818)
Q Consensus 644 ~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~--------- 714 (818)
++|.++|++||+++|+|++| ++|..+.- ...+|+.-.+.++.|.++++ .++|.+++++++++.+...
T Consensus 178 ~~I~~la~~~g~~livD~a~-~~g~~~~~--~~~~g~D~~~~s~~K~l~~~-~~~G~l~~~~~~i~~~~~~~~~~~~~~~ 253 (387)
T PRK09331 178 KKVAKVAHEYGIPFLLNGAY-TVGRMPVD--GKKLGADFIVGSGHKSMAAS-APSGVLATTEEYADKVFRTSRKFGVKEV 253 (387)
T ss_pred HHHHHHHHHcCCEEEEECCc-ccCCcCCC--HHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhcccccCCCcccce
Confidence 99999999999999999999 45543321 12345533345789999876 5889899999988765331
Q ss_pred ------h---H---------HHH-------------HHHHHHHHcCCCeeEE---EeeeeEEEEEEecCcccCCCchHHH
Q 003466 715 ------S---K---------LWD-------------LELIQQISSHRTVQRV---VALGTLCAIELQAAGCNAGYGSLYA 760 (818)
Q Consensus 715 ------~---~---------~~~-------------~~l~~~l~~~~~v~~v---rg~Gl~~~iel~~~~~~~~~~~~~a 760 (818)
. . .+. +.+.+.+++.+.+.-+ .....++.++...-..........+
T Consensus 254 ~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 333 (387)
T PRK09331 254 ELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRG 333 (387)
T ss_pred eeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccc
Confidence 0 0 000 1122334444322211 1112223333210000000001124
Q ss_pred HHHHHHHHhCCceEe-ecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMR-PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~-p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
..+.+.|.++||+.. +....++...+..+|++|+++++++|+++++++
T Consensus 334 ~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 334 FFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred hhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 568899999999954 344555555556689999999999999887764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=149.42 Aligned_cols=173 Identities=16% Similarity=0.113 Sum_probs=120.8
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch----hcccCCCCcEEEeccccc
Q 003466 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT----ADLLGCVPDIACYGKLLT 692 (818)
Q Consensus 617 ~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a----~e~~gv~PDivtlgKgLg 692 (818)
..++++|++++. ++..|.+. |.+.+++|.++|+++|+++|+||++++++..|.... ....+....+.+++|.++
T Consensus 130 ~~~~~~v~i~~~-~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~ 207 (350)
T cd00609 130 TPKTKLLYLNNP-NNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFG 207 (350)
T ss_pred CccceEEEEECC-CCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccC
Confidence 357899999995 88888866 788999999999999999999999998876665432 222222222347999998
Q ss_pred -CCccccceeecch-HHHhhccCChH--------------------H-------------HHHHHHHHHHcCCCee-EEE
Q 003466 693 -GGVIPLAATLATN-AVFDSFVGDSK--------------------L-------------WDLELIQQISSHRTVQ-RVV 736 (818)
Q Consensus 693 -gGy~PlsAvl~~~-~i~~~l~~~~~--------------------~-------------~~~~l~~~l~~~~~v~-~vr 736 (818)
+| .++|++++++ ++.+.+..... . ..+.+.+.+++.+... ...
T Consensus 208 ~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 286 (350)
T cd00609 208 LPG-LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKP 286 (350)
T ss_pred Ccc-cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Confidence 77 6999999999 77776543211 0 0012334445544332 334
Q ss_pred eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 737 ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 737 g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
..|.++.+.+... ..+..+.+.|.++||++.+. ++.+|+.++.. ++||++++++|+
T Consensus 287 ~~g~~~~~~~~~~--------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 287 SGGFFLWLDLPEG--------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred CccEEEEEecCCC--------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 5566666666432 12445666777889999864 37899999987 899999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=146.55 Aligned_cols=289 Identities=15% Similarity=0.080 Sum_probs=166.4
Q ss_pred CCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccc
Q 003466 414 DATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (818)
Q Consensus 414 Gh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~ 492 (818)
-|. ||++++|+.++++... .........+...++.++|+++++.+ -..++|+++|++||+.|++.+ +....+
T Consensus 30 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~ggt~a~~~a~~~~-~~~~~~---- 102 (371)
T PRK13520 30 TEP-HPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLP-DAYGYITSGGTEANIQAVRAA-RNLAKA---- 102 (371)
T ss_pred cCc-hHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEecCcHHHHHHHHHHH-HhhccC----
Confidence 456 9999999999887632 22111123444578889999988743 235788999999999999987 322111
Q ss_pred ccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhc
Q 003466 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (818)
Q Consensus 493 ~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (818)
++.+||..+.++.. ...++...|.. ...++.+..+
T Consensus 103 ------------~~~~vl~~~~~h~s-~~~~~~~~g~~----------------------------~~~v~~~~~~---- 137 (371)
T PRK13520 103 ------------EKPNIVVPESAHFS-FDKAADMLGVE----------------------------LRRAPLDDDY---- 137 (371)
T ss_pred ------------CCceEEecCcchHH-HHHHHHHcCce----------------------------EEEecCCCCC----
Confidence 12367776654432 21111111111 0111111100
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh
Q 003466 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (818)
Q Consensus 573 ~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~ 652 (818)
..| .+.+++.+.. +....+++.+ .+..|.+.+ +++|.++|++
T Consensus 138 -------~~d------------------~~~l~~~i~~-------~~~~vi~~~~--~~~tG~~~~----l~~I~~l~~~ 179 (371)
T PRK13520 138 -------RVD------------------VKAVEDLIDD-------NTIGIVGIAG--TTELGQVDP----IPELSKIALE 179 (371)
T ss_pred -------cCC------------------HHHHHHHHhh-------CCEEEEEEcC--CcCCcccCC----HHHHHHHHHH
Confidence 111 2566777752 2223344444 355677776 9999999999
Q ss_pred cCCcEEEeecccCcc----cCCccchhcccCCCCcEEEe--cccccCCccccceeec-chHHHhhccCC-----------
Q 003466 653 RKIPVIFDEVFTGFW----RLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFVGD----------- 714 (818)
Q Consensus 653 ~gilLI~DEV~TGfG----RtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~-~~~i~~~l~~~----------- 714 (818)
||+++|+||+|+|+. +.+..+.....+ .|.+++ -|.+.+| .|+|+++. ++++++.+...
T Consensus 180 ~g~~livD~a~~~~~~~~~~~~~~~~~~~~~--vd~~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~ 256 (371)
T PRK13520 180 NGIFLHVDAAFGGFVIPFLDDPPNFDFSLPG--VDSITIDPHKMGLAP-IPAGGILFRDESYLDALAVDTPYLTSKKQAT 256 (371)
T ss_pred cCCCEEEEecchhHHHHhhcCCCCccccCCC--CceEEECCccccCcc-CCceEEEEcCHHHHHhhcccCccccCCCCcc
Confidence 999999999998652 222112222222 465553 3644445 68887776 45565543210
Q ss_pred -------hH---------HH-H--------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHH
Q 003466 715 -------SK---------LW-D--------------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASL 763 (818)
Q Consensus 715 -------~~---------~~-~--------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~ 763 (818)
.. .+ . +.+.+.+++.+.-.-+.....++.+.+. + +..+
T Consensus 257 ~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~-~----------~~~v 325 (371)
T PRK13520 257 LTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEPVLNIVAFDDP-N----------PDEV 325 (371)
T ss_pred eEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCceEEEEecC-C----------HHHH
Confidence 00 00 0 1122333333211011112234444432 1 4578
Q ss_pred HHHHHhCCceEeec--CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 764 LKKLREDGVYMRPL--GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 764 ~~~l~e~Gvlv~p~--g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.+.|.++||++.+. +..+|++++..+|++||++++++|+++++
T Consensus 326 ~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 326 REKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred HHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 88999999999875 36799988878999999999999988764
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-12 Score=145.63 Aligned_cols=294 Identities=14% Similarity=0.116 Sum_probs=176.2
Q ss_pred eeecccccccccCCCCCCHHHHHHHHHhhhhc----ccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHH
Q 003466 401 QFDACASWWTQGPDATLQIELARDMGYTAARF----GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIE 475 (818)
Q Consensus 401 ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~----~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e 475 (818)
.||+..+ .+.++ . .|.+++|+.+++... ..+.. .+..+....+++.+.+..+.+ .-+.+++++++++|..
T Consensus 28 ~i~l~~~--~~~~~-~-~~~~~~al~~~l~~~~~~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~ 102 (368)
T PRK03317 28 PVRLNTN--ENPYP-P-SPALVADIAEAVAEAAAGLNRYPD-RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQ 102 (368)
T ss_pred eeEecCC--CCCCC-C-CHHHHHHHHHHHhhhhhhhccCCC-CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHH
Confidence 4665542 12333 3 789999999886532 11111 122334555566655432311 1257999999999998
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.. .+.| ..|+...-+|++....+ ...|..
T Consensus 103 ~~~~~~-----~~~g----------------d~v~v~~P~y~~~~~~~-~~~g~~------------------------- 135 (368)
T PRK03317 103 QLLQAF-----GGPG----------------RTALGFVPSYSMHPIIA-RGTHTE------------------------- 135 (368)
T ss_pred HHHHHh-----cCCC----------------CEEEEeCCChHHHHHHH-HhcCCe-------------------------
Confidence 888865 1222 25888888887643221 111111
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+++|..- +. -.| .+.+++.+.. .+..+|++... ++..|.
T Consensus 136 -----~~~~~~~~--------~~-~~d------------------~~~l~~~~~~-------~~~~~i~l~~p-~NPtG~ 175 (368)
T PRK03317 136 -----WVEGPRAA--------DF-TLD------------------VDAAVAAIAE-------HRPDVVFLTSP-NNPTGT 175 (368)
T ss_pred -----eEEcccCC--------CC-CCC------------------HHHHHHHHhc-------cCCCEEEEeCC-CCCCCC
Confidence 01111000 00 001 1456666642 12334444443 787888
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccccceeecchHHHhhc
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~PlsAvl~~~~i~~~l 711 (818)
+.+ .++++++|+.+++++|+||++++|++.|.....+.++..|+++ +|||++| .| +++|++++++++++.+
T Consensus 176 ~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l 250 (368)
T PRK03317 176 ALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDAL 250 (368)
T ss_pred CCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccch-hhhhhhhCCHHHHHHH
Confidence 886 7788888888899999999999998777655555556678877 8999998 68 7999999999998876
Q ss_pred cCChH--------------HH------H----------HHHHHHHHcCCCeeEEEeeeeEEEE-EEecCcccCCCchHHH
Q 003466 712 VGDSK--------------LW------D----------LELIQQISSHRTVQRVVALGTLCAI-ELQAAGCNAGYGSLYA 760 (818)
Q Consensus 712 ~~~~~--------------~~------~----------~~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~~~~~~~~~~~a 760 (818)
..... .+ . +.+.+.++.++. .-....|.++-+ .+ . .+
T Consensus 251 ~~~~~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~-~----------~~ 318 (368)
T PRK03317 251 RLVRLPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRELGL-RVAPSDANFVLFGRF-A----------DR 318 (368)
T ss_pred HhcCCCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCC-EeCCCCCcEEEEecc-C----------CH
Confidence 53211 00 0 112233333332 112223333322 11 1 14
Q ss_pred HHHHHHHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
..+++.|+++||++.+.+ +.+|++. .+++++++++++|+++++
T Consensus 319 ~~~~~~l~~~Gv~v~~~~~~~~iRi~~---~~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 319 HAVWQGLLDRGVLIRDVGIPGWLRVTI---GTPEENDAFLAALAEVLA 363 (368)
T ss_pred HHHHHHHHHCCEEEEeCCCCCeEEEec---CCHHHHHHHHHHHHHHHH
Confidence 568889999999999854 6888885 367899999999988764
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=148.53 Aligned_cols=286 Identities=10% Similarity=0.037 Sum_probs=163.6
Q ss_pred CHHHHHHHHHhh-hhccccc----CCCCCChhHHHHHH----HHHhccCCCCCCcE-EEeCChhHHHHHHHHHHHHHhhh
Q 003466 418 QIELARDMGYTA-ARFGHVM----FPENVYEPALECAE----LLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSF 487 (818)
Q Consensus 418 hp~V~eAi~~q~-~~~~~~~----~~~~~~~~~~eLae----~L~~~~~~~~l~~v-~f~~SGseA~e~ALklA~r~~t~ 487 (818)
||++++|+..++ .+++... ..++ ++.+.+|++ +++++++. +.+ ++++||+.||.+++....
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~---~~alv~~~SG~~A~~~~l~al~----- 111 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGC---DYANVQPHSGSQANGAVYLALL----- 111 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCC---CceEEecCCcHHHHHHHHHHhc-----
Confidence 899999999995 8886532 1223 688899998 99999984 566 456999999999998651
Q ss_pred cccccccccCCCccccccceEEEEEcCCCCCC-ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc
Q 003466 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGD-TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (818)
Q Consensus 488 ~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~-t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~ 566 (818)
.+| ..||+-+. .||. ...++..+... .++.. ..++. -+.
T Consensus 112 ~~G----------------D~Vl~~~~-~~~~~~~~g~~~~~~~--------~~~~~--~~~~~-------------~~~ 151 (416)
T PRK13034 112 KPG----------------DTILGMSL-SHGGHLTHGAKVSLSG--------KWYNA--VQYGV-------------DRL 151 (416)
T ss_pred CCC----------------CEEEEcCc-cceeeeecCCcceecc--------ceeee--EEccc-------------ccc
Confidence 222 24555555 4543 22121111000 00000 00000 000
Q ss_pred hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHH
Q 003466 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRI 645 (818)
Q Consensus 567 ~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~~p~~fl~~ 645 (818)
. ..+|+ +.+++.+.. .+..+|++ +++ .+ +..+ +++
T Consensus 152 ~-----------~~~d~------------------~~le~~l~~-------~~~klVi~~~~~-~g---~~~d----l~~ 187 (416)
T PRK13034 152 T-----------GLIDY------------------DEVEELAKE-------HKPKLIIAGFSA-YP---RELD----FAR 187 (416)
T ss_pred c-----------CCcCH------------------HHHHHHHhh-------cCCeEEEECCCc-cc---cccC----HHH
Confidence 0 01221 456666642 12457777 575 34 3333 889
Q ss_pred HHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchH-HHhhcc---CCh----
Q 003466 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA-VFDSFV---GDS---- 715 (818)
Q Consensus 646 LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~-i~~~l~---~~~---- 715 (818)
|.++|++||++||+|++| ++|-+|.......++ ..|++ +++|.|+|+ ..|+++++++ +.+.+. ..+
T Consensus 188 l~~la~~~g~~livD~Ah-a~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~--~GG~v~~~~~~~~~~~~~~~~~~~~~~ 263 (416)
T PRK13034 188 FREIADEVGALLMVDMAH-IAGLVAAGEHPNPFP-HAHVVTTTTHKTLRGP--RGGMILTNDEEIAKKINSAVFPGLQGG 263 (416)
T ss_pred HHHHHHHcCCEEEEeCcc-cccCcccCCCCCCCC-CceEEEEeCcccCCCC--CCeEEEECcHHHHHHHHhhcCCcccCC
Confidence 999999999999999999 677776532111112 36766 678999764 2455666543 333221 111
Q ss_pred -H-------------HH-------HH-------HHHHHHHcCCCeeEEE--eeeeEEEEEEecCcccCCCchHHHHHHHH
Q 003466 716 -K-------------LW-------DL-------ELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLK 765 (818)
Q Consensus 716 -~-------------~~-------~~-------~l~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a~~~~~ 765 (818)
. .+ .+ .+.+.+++.+. .-+. ....+..+.+.... .....+.+
T Consensus 264 ~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~-~~~~~~~~t~i~~v~~~~~~-------~~~~~~~~ 335 (416)
T PRK13034 264 PLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGY-DLVSGGTDNHLLLVDLRPKG-------LSGKDAEQ 335 (416)
T ss_pred ccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCC-EeccCCCCCcEEEEEcCCCC-------CCHHHHHH
Confidence 0 11 11 12222332221 1010 12344444444321 12344567
Q ss_pred HHHhCCceEee-----------cCCEEEEECCC----CChHHHHHHHHHHHHHHHHHH
Q 003466 766 KLREDGVYMRP-----------LGNVIYLMCGP----CSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 766 ~l~e~Gvlv~p-----------~g~~ir~~ppl----~~t~edId~~~~~l~~~l~~l 808 (818)
.|.++||++.+ ....||+.++. .++++||++++++|++++...
T Consensus 336 ~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~~ 393 (416)
T PRK13034 336 ALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDDL 393 (416)
T ss_pred HHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence 88899999974 12579999888 788999999999999998753
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-12 Score=143.09 Aligned_cols=305 Identities=12% Similarity=0.120 Sum_probs=183.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+..+ .+.++ . +|++.+|+.+++.......+ ....-..+|.+.+++.++-. .+.++++++|++|+..+++
T Consensus 29 ~~i~l~~~--~~~~~-~-~~~~~~a~~~~~~~~~~~~y--~~~~g~~~lr~~ia~~l~~~-~~~v~~~~g~t~al~~~~~ 101 (380)
T PRK06225 29 EMIWMGQN--TNHLG-P-HEEVREAMIRCIEEGEYCKY--PPPEGFPELRELILKDLGLD-DDEALITAGATESLYLVMR 101 (380)
T ss_pred CeEEccCC--CCCCC-C-CHHHHHHHHHHHhcCCCCCC--CCCcchHHHHHHHHHhcCCC-CCcEEEeCCHHHHHHHHHH
Confidence 67777653 23444 4 79999999998875321111 11223466778888877643 3589999999999999988
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... ..| ..|+..+.+|+... ..+...|..
T Consensus 102 ~~~-----~~g----------------d~vl~~~p~y~~~~-~~~~~~g~~----------------------------- 130 (380)
T PRK06225 102 AFL-----SPG----------------DNAVTPDPGYLIID-NFASRFGAE----------------------------- 130 (380)
T ss_pred Hhc-----CCC----------------CEEEEcCCCCcchH-HHHHHhCce-----------------------------
Confidence 651 111 35888888777432 112222211
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCcccC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHMV 638 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~~g~gG~~~~ 638 (818)
.+.+|-. ++. ..+. -+ .+.+++.+. +++.+ +++.| +...|...
T Consensus 131 -~~~v~~~-------------~~~-~~~~--~d--------~~~l~~~~~--------~~~~~v~l~~p--~NptG~~~- 174 (380)
T PRK06225 131 -VIEVPIY-------------SEE-CNYK--LT--------PELVKENMD--------ENTRLIYLIDP--LNPLGSSY- 174 (380)
T ss_pred -EEeeccc-------------ccc-CCcc--CC--------HHHHHhhcC--------CCceEEEEeCC--CCCCCcCC-
Confidence 0111100 000 0000 00 134554443 23444 45667 46667766
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcc-cCCCCcEEEeccccc-CCccccceeecchHHHhhccCChH
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL-LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSK 716 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~-~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~~ 716 (818)
+.+.+++|.++|++||+++|+||++..|. .+....... .....++.++||.+| .| +.+|++++++++++.+.....
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~~~ 252 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDCTYRDFA-REHTLAAEYAPEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSIVI 252 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhHHHHh-ccCCchhhcCCCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHHHh
Confidence 78899999999999999999999998763 222111111 011234668999997 67 799999999998876542110
Q ss_pred ---------------HH------HH-----------HHHHHHHcCCCe--eEEEeeeeEEEEEEecCcccCCCchHHHHH
Q 003466 717 ---------------LW------DL-----------ELIQQISSHRTV--QRVVALGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 717 ---------------~~------~~-----------~l~~~l~~~~~v--~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
.+ .+ .+.+.+++++.+ ......|.++.+++.... .....
T Consensus 253 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~ 325 (380)
T PRK06225 253 NDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAG-------IDPED 325 (380)
T ss_pred cccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccccc-------CCHHH
Confidence 00 00 122334443332 223345667777764321 12456
Q ss_pred HHHHHHhCCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+++.|.++||+++++ + +.+|+.. ..+++++++++++|.++++++.
T Consensus 326 l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~--~~~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 326 LVEYLLERKIFVRQGTYTSKRFGDRYIRVSF--SIPREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred HHHHHHHCCEEEcCCcccCcCCCCceEEEEe--CCCHHHHHHHHHHHHHHHHHhh
Confidence 888899999999873 1 4677775 4578999999999999988764
|
|
| >COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=151.08 Aligned_cols=198 Identities=20% Similarity=0.190 Sum_probs=128.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceec--cCCCCCCchHHHHHhccCCccccCCCcccccc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ--TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILS 113 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~--~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (818)
||++|||.+|++++|||.|++||.++|. ++|.+|+|||||. +|...+.....+.+...
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~-----~k~~kva~~kPI~~~~~~~~~~~~e~~~~~~~--------------- 60 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALE-----QKGLKVAYFKPIGTRTGKDADDLTEEDIRATS--------------- 60 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHH-----HcCceeEEEeccccccCCccchhHHHHHHHhh---------------
Confidence 6899999999999999999999999994 8999999999997 45433333332222210
Q ss_pred cchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhh-c-CCC
Q 003466 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERE-S-GGV 191 (818)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~-~-~~~ 191 (818)
-++.+.+ +..+.. +.... + ..+
T Consensus 61 -----------------~~l~~~~---------------------------------~~~~~~------ae~L~~~~~~d 84 (354)
T COG0857 61 -----------------SSLTYAE---------------------------------PLVLSF------AEVLLSTGQDD 84 (354)
T ss_pred -----------------hhcccCc---------------------------------ccchhh------HHHHhccccch
Confidence 0011100 111111 11111 0 113
Q ss_pred CChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHH--
Q 003466 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS-- 269 (818)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~-- 269 (818)
..+++|.+.+.++.+. +|++++||-==..........|++||+.|+++++||++..+-+..+...
T Consensus 85 ~l~e~i~~~y~e~~~~-------------~~~vv~~g~~~~~~~~~~~~ln~~iA~~Lna~~vlva~~~~~~~~~~~~~i 151 (354)
T COG0857 85 VLLEEILANYAELAKD-------------ADVVVVEGDVPTREGPYALDLNYEIAKNLNAAAVLVARALLVTPYELKSRV 151 (354)
T ss_pred HHHHHHHHHHHHHhcc-------------CceEEeccceeccccCccccccHHHHhhcCcchhhccccccCChhhhhhHH
Confidence 3456777777666543 8999999932111112245799999999999999999988766554444
Q ss_pred --HHHHHHhCCCcEEEEEEccCC----CCCHHHHHHhhcC-CCCEEe-cCCCCCCCcchhh
Q 003466 270 --AYESLKLRGYDVVAVVFEDHG----LVNEVPLMSYLRN-RVPVLV-LPPLPQDSSNDLM 322 (818)
Q Consensus 270 --~~~~l~~~~~~v~gvi~N~~~----~~~~~~l~~~~~~-~~pvlg-iP~~~~~~~~~~~ 322 (818)
....+...+.++.|||+|+.. ....+.+++.+++ +..+++ +|..+-+.+..+.
T Consensus 152 ~~~~~~~~~~~~~l~gVv~N~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll~~~~v~ 212 (354)
T COG0857 152 ELALAAFGAAGNNLAGVVINNAPVDEAGRTEDLLAEFLESSGIAVVGVLPPNRLLRSSPVR 212 (354)
T ss_pred HHHHHHhcccCCceEEEEecCCChhhhhhhhhHHHHHhhhccccccccCCHHHHhcCCcHH
Confidence 444444445589999999762 2234556666655 889999 8987776655444
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-12 Score=138.50 Aligned_cols=292 Identities=13% Similarity=0.053 Sum_probs=167.1
Q ss_pred ecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHH
Q 003466 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 482 (818)
Q Consensus 403 D~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~ 482 (818)
||+| .+++| . +|++.+|+.+.+.... . .+..+...++++.++++++. +.++++++|++|+..+++..+
T Consensus 1 ~~~~---~~~~~-~-~~~v~~a~~~~~~~~~--~--~~~~~~~~~l~~~~a~~~g~---~~~~~~~~gt~a~~~~~~~l~ 68 (338)
T cd06502 1 DFRS---DTVTG-P-TPEMLEAMAAANVGDD--V--YGEDPTTAKLEARAAELFGK---EAALFVPSGTAANQLALAAHT 68 (338)
T ss_pred Cccc---ccCCC-C-CHHHHHHHHhcccCCc--c--cCCCHHHHHHHHHHHHHhCC---CeEEEecCchHHHHHHHHHhc
Confidence 4555 56677 4 7999999988654321 1 12356688999999998872 578889999999999888651
Q ss_pred HHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc---cccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 483 RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM---EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 483 r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al---s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
..| ..|+ ....+|.....+. .+.|.+.
T Consensus 69 -----~~g----------------d~v~-~~~~~~~~~~~~~~~~~~~g~~~---------------------------- 98 (338)
T cd06502 69 -----QPG----------------GSVI-CHETAHIYTDEAGAPEFLSGVKL---------------------------- 98 (338)
T ss_pred -----CCC----------------CeEE-EecCcceeeecCCcHHHHcCceE----------------------------
Confidence 112 2444 5556665433211 1111110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..++... + ..| .+.+++.+.+.. ..+..+.++|+++.. .+.||+. +
T Consensus 99 ~~v~~~~-~-----------~~d------------------~~~l~~~i~~~~-~~~~~~~~~v~l~~p-~n~g~~~--~ 144 (338)
T cd06502 99 LPVPGEN-G-----------KLT------------------PEDLEAAIRPRD-DIHFPPPSLVSLENT-TEGGTVY--P 144 (338)
T ss_pred EeecCCC-C-----------cCC------------------HHHHHHHhhccC-CCcCCcceEEEEEee-cCCcccc--C
Confidence 0011000 0 011 145666664210 011235677888865 5655533 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCc--ccCCccchhcccCCCCcEE--EecccccCCccccce-eecchHHHhhccCC
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAA-TLATNAVFDSFVGD 714 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGf--GRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsA-vl~~~~i~~~l~~~ 714 (818)
...+++|.++|++||+++|+||++.-+ +-.|. ....+...+|++ +++|.++. |.|+ +++++++++.+...
T Consensus 145 ~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~---~~g~~~~~~~~~~~~~~~~ 219 (338)
T cd06502 145 LDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA---PVGAVVVGNRDFIARARRR 219 (338)
T ss_pred HHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCCC---ccceEEECCHHHHHHHHHH
Confidence 889999999999999999999987311 11122 112222346665 78888763 3344 45688876654321
Q ss_pred h-------H-----------H-----H----------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHH
Q 003466 715 S-------K-----------L-----W----------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 715 ~-------~-----------~-----~----------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
. . . + .+.+.+.++.++.. .....+-+..+.+... .....
T Consensus 220 ~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~v~~~~~-------~~~~~ 291 (338)
T cd06502 220 RKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGGL-ESEVQTNIVLLDPVEA-------NAVFV 291 (338)
T ss_pred HHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCCC-cccccCCeEEEecCCc-------cHHHH
Confidence 0 0 0 0 01223334444331 0111222333333211 12333
Q ss_pred HHHHHHH---hCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHH
Q 003466 762 SLLKKLR---EDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 762 ~~~~~l~---e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
.+.+.+. ++|+++.+.+ +.+|++|++.+|++|++++++++++
T Consensus 292 ~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 292 ELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred HHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 4455554 7899998764 8999999999999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-11 Score=132.89 Aligned_cols=298 Identities=13% Similarity=0.043 Sum_probs=171.6
Q ss_pred eeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCC----CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHH
Q 003466 401 QFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPEN----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (818)
Q Consensus 401 ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e 475 (818)
|||..+ .|-- ++.|.+|+.+.++.. +....... ..+...++.++++++++.. .+.++|+++|++|+.
T Consensus 2 yld~aa------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~t~~~t~a~~ 73 (379)
T TIGR03402 2 YLDNNA------TTRV-DPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAE-PDEIIFTSGGTESDN 73 (379)
T ss_pred cCCCcC------CCCC-CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHHH
Confidence 666554 4445 899999999887643 21110000 1234556778888888754 367999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.|++.+. ... +++..||.....|++.. .....-.. .|..
T Consensus 74 ~al~~~~-~~~-----------------~~~~~vv~~~~~~~s~~-~~~~~~~~--------------~G~~-------- 112 (379)
T TIGR03402 74 TAIKSAL-AAQ-----------------PEKRHIITTAVEHPAVL-SLCQHLEK--------------QGYK-------- 112 (379)
T ss_pred HHHHHHH-Hhc-----------------CCCCeEEEcccccHHHH-HHHHHHHH--------------cCCE--------
Confidence 9999762 111 11235665555555321 11111000 0000
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
...++.+... ..| .+.+++.+. +++..|++.-+ ++..|.
T Consensus 113 ---v~~v~~~~~g-----------~~~------------------~~~l~~~i~--------~~~~lv~i~~~-~n~tG~ 151 (379)
T TIGR03402 113 ---VTYLPVDEEG-----------RLD------------------LEELRAAIT--------DDTALVSVMWA-NNETGT 151 (379)
T ss_pred ---EEEEccCCCC-----------cCC------------------HHHHHHhcC--------CCcEEEEEEcc-cCCeee
Confidence 0011111000 001 145666553 24567777776 788898
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHh--hc
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD--SF 711 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~--~l 711 (818)
+.+ +++|.++|++||+++|+|++|+ +|.. -.+.....+|++++| | +.|. ..+|++..+++..- .+
T Consensus 152 ~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~----~~~~~~~~~D~~~~s~~K-~~gp-~G~g~l~v~~~~~~~p~~ 220 (379)
T TIGR03402 152 IFP----IEEIGEIAKERGALFHTDAVQA-VGKI----PIDLKEMNIDMLSLSGHK-LHGP-KGVGALYIRKGTRFRPLL 220 (379)
T ss_pred ccc----HHHHHHHHHHcCCEEEEECccc-cccc----ccCcccCCCCEEEEcHHH-cCCC-CceEEEEECCCCCCCCcc
Confidence 886 7899999999999999999994 4422 112223457999999 9 6543 34666666654310 01
Q ss_pred ---------cCChH-------------HH--------------HHHHHHHHHc-CCCeeEEEe----e-eeEEEEEEecC
Q 003466 712 ---------VGDSK-------------LW--------------DLELIQQISS-HRTVQRVVA----L-GTLCAIELQAA 749 (818)
Q Consensus 712 ---------~~~~~-------------~~--------------~~~l~~~l~~-~~~v~~vrg----~-Gl~~~iel~~~ 749 (818)
..+.. ++ .+.+.+.++. .+.+. +-+ . ..++.+.+...
T Consensus 221 ~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 299 (379)
T TIGR03402 221 RGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDAR-LNGDPTKRLPNTVNISFEYI 299 (379)
T ss_pred cCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEE-EeCCCccCCCCEEEEEecCC
Confidence 10000 00 0122233332 44321 111 1 11233333211
Q ss_pred cccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 750 GCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 750 ~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+..+...|.++||.++++ .+.+|+++....|++|||++++.|++++
T Consensus 300 ---------~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~ 370 (379)
T TIGR03402 300 ---------EGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPII 370 (379)
T ss_pred ---------CHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 1346777888999999752 2579999999999999999999999988
Q ss_pred HHHH
Q 003466 806 EEFD 809 (818)
Q Consensus 806 ~~l~ 809 (818)
+++.
T Consensus 371 ~~~~ 374 (379)
T TIGR03402 371 ARLR 374 (379)
T ss_pred HHHH
Confidence 7755
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-10 Score=130.58 Aligned_cols=306 Identities=14% Similarity=0.090 Sum_probs=176.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
..|++..|... ++ . .+.+.+++++.+.... .+....+..+....+++.+.+..+.. ..+.++++++|++|+..+
T Consensus 25 ~~i~l~~g~~~--~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~ 100 (382)
T PRK06108 25 GVLPLWFGESD--LP-T-PDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLA 100 (382)
T ss_pred CeEEecCCCCC--CC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHH
Confidence 34555553321 22 2 5789999988776522 12222345567778888887654411 125899999999999988
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++... ..| ..|++.+.+|.+.. ..+...|..
T Consensus 101 ~~~l~-----~~g----------------d~vl~~~p~y~~~~-~~~~~~g~~--------------------------- 131 (382)
T PRK06108 101 AQALV-----GPG----------------DEVVAVTPLWPNLV-AAPKILGAR--------------------------- 131 (382)
T ss_pred HHHhc-----CCC----------------CEEEEeCCCccchH-HHHHHCCCE---------------------------
Confidence 88651 112 35777777665432 111111111
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
.+.+|... .+ ..|. -+ .+.+++.+. .++.+|++... ++..|.+.
T Consensus 132 ---~~~v~~~~------------~~--~~~~--~d--------~~~l~~~~~--------~~~~~i~l~~p-~NPtG~~~ 175 (382)
T PRK06108 132 ---VVCVPLDF------------GG--GGWT--LD--------LDRLLAAIT--------PRTRALFINSP-NNPTGWTA 175 (382)
T ss_pred ---EEEeeCCC------------CC--CCcc--CC--------HHHHHHhcC--------ccceEEEEECC-CCCCCccc
Confidence 01111000 00 0000 00 144555543 24556666553 77778775
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccC-Cccc-h-hcccCCCCc---EEEeccccc-CCccccceeecchHHHhh
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVET-T-ADLLGCVPD---IACYGKLLT-GGVIPLAATLATNAVFDS 710 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRt-G~~~-a-~e~~gv~PD---ivtlgKgLg-gGy~PlsAvl~~~~i~~~ 710 (818)
+.+.+++|.++|++||+++|+||++.+|... +... . ....+..+. +.+|||.+| .| +.+|.+++++++++.
T Consensus 176 -~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~ 253 (382)
T PRK06108 176 -SRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQV 253 (382)
T ss_pred -CHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHH
Confidence 8999999999999999999999999877332 1111 1 111111122 237999987 57 799999999888765
Q ss_pred ccCC--------hH--------HH-----------------HHHHHHHHHcCCCeeEEEeeee-EEEEEEecCcccCCCc
Q 003466 711 FVGD--------SK--------LW-----------------DLELIQQISSHRTVQRVVALGT-LCAIELQAAGCNAGYG 756 (818)
Q Consensus 711 l~~~--------~~--------~~-----------------~~~l~~~l~~~~~v~~vrg~Gl-~~~iel~~~~~~~~~~ 756 (818)
+... .. .+ .+.+.+.++.++.+..+...|. ++-+.+...
T Consensus 254 ~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~------- 326 (382)
T PRK06108 254 LEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGV------- 326 (382)
T ss_pred HHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCC-------
Confidence 4311 00 00 0112334444444333333433 334445322
Q ss_pred hHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 757 SLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 757 ~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
..+..+++.|+ ++||++.|+ .+.+|++... +++++++++++|.++++
T Consensus 327 -~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 327 -TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred -CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 12456788776 579999872 2679998886 89999999999988764
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.8e-11 Score=131.36 Aligned_cols=292 Identities=13% Similarity=0.156 Sum_probs=172.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
++||+.++. +.+| . +|.+.+++.+.++.+..+. .....+|.+.++++++-. .+.++++++++++...++.
T Consensus 33 ~~i~l~~~~--~~~~-~-~~~~~~a~~~~~~~~~~y~-----~~~~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 33 DIIKLASNE--NPLG-P-SPKAIEAIRAAADELHRYP-----DGSGFELKAALAEKFGVD-PERIILGNGSDEILELLAR 102 (367)
T ss_pred ceEEecCCC--CCCC-C-CHHHHHHHHHHHHhhcCCC-----CCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHH
Confidence 899998742 3566 3 6889999998876543221 112346777777776532 2578888777777666555
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.. . +.| ..|+..+.+|.+.... ....|..
T Consensus 103 ~l----~-~~g----------------d~vl~~~p~y~~~~~~-~~~~g~~----------------------------- 131 (367)
T PRK02731 103 AY----L-GPG----------------DEVIYSEHGFAVYPIA-AQAVGAK----------------------------- 131 (367)
T ss_pred Hh----c-CCC----------------CEEEEecCCHHHHHHH-HHHcCCe-----------------------------
Confidence 43 1 112 3577777777543221 1111111
Q ss_pred eeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 560 ~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
.+.+|. .+ ..| .+.+++.+. ++..+|++... ++..|.+.+
T Consensus 132 -~~~~~~~~~-----------~~~------------------~~~l~~~~~--------~~~~~v~l~~p-~nptG~~~~ 172 (367)
T PRK02731 132 -PVEVPAKDY-----------GHD------------------LDAMLAAVT--------PRTRLVFIANP-NNPTGTYLP 172 (367)
T ss_pred -EEEecccCC-----------CCC------------------HHHHHHHhC--------CCCcEEEEeCC-CCCCCcCCC
Confidence 011110 00 001 144555553 23455665554 788888774
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCCCCcEE---Eeccccc-CCccccceeecchHHHhhccC
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv---tlgKgLg-gGy~PlsAvl~~~~i~~~l~~ 713 (818)
.+-+.++.+.|+ +|+++|+||++..+...+. ..+...++..++++ ++||.+| .| +.+|.+++++++++.+..
T Consensus 173 -~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~ 249 (367)
T PRK02731 173 -AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNR 249 (367)
T ss_pred -HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHH
Confidence 444444444443 4999999999987644332 22233333345555 8999987 67 699999999988876642
Q ss_pred Ch------H--------------HH----------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHH
Q 003466 714 DS------K--------------LW----------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASL 763 (818)
Q Consensus 714 ~~------~--------------~~----------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~ 763 (818)
.. . .+ .+.+.+.+++++. ......|.++.+.+... ..+..+
T Consensus 250 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~g~~~~i~~~~~--------~~~~~~ 320 (367)
T PRK02731 250 VRQPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELGL-EYIPSVGNFILVDFDDG--------KDAAEA 320 (367)
T ss_pred ccCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCCceEEEEECCCC--------CCHHHH
Confidence 11 0 00 0123344454432 22234577777776322 125678
Q ss_pred HHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 764 LKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 764 ~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
++.|.++||++++. .+.+|++.. +.+++++++++|+++++
T Consensus 321 ~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 321 YQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFLA 365 (367)
T ss_pred HHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence 89999999999984 257888864 68899999999988764
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-11 Score=131.39 Aligned_cols=280 Identities=16% Similarity=0.064 Sum_probs=162.8
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
++++.+|+.+.+.... .....+...++.+.|+++++.+..+.+++++||++|+..++.... ..|
T Consensus 11 ~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~-----~~g------- 74 (356)
T cd06451 11 PPRVLKAMNRPMLGHR----SPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL-----EPG------- 74 (356)
T ss_pred CHHHHHHhCCCccCCC----CHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC-----CCC-------
Confidence 6777777764432111 011235577888999998875322357899999999988887541 122
Q ss_pred CCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
..|++...+|++.... .....|.+. ..++....+
T Consensus 75 ---------~~vl~~~~~~~~~~~~~~~~~~g~~~----------------------------~~v~~~~~~-------- 109 (356)
T cd06451 75 ---------DKVLVGVNGVFGDRWADMAERYGADV----------------------------DVVEKPWGE-------- 109 (356)
T ss_pred ---------CEEEEecCCchhHHHHHHHHHhCCCe----------------------------EEeecCCCC--------
Confidence 3577776655553211 111111110 001100000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+. +.++++|++-.. +...|.+.+ +++|.++|+++|++
T Consensus 110 ---~~~------------------~~~l~~~i~-------~~~~~~v~i~~~-~~~~G~~~~----~~~i~~~a~~~~~~ 156 (356)
T cd06451 110 ---AVS------------------PEEIAEALE-------QHDIKAVTLTHN-ETSTGVLNP----LEGIGALAKKHDAL 156 (356)
T ss_pred ---CCC------------------HHHHHHHHh-------ccCCCEEEEecc-CCCcccccC----HHHHHHHHHhcCCE
Confidence 111 255666664 124556666554 667888775 88999999999999
Q ss_pred EEEeecccCcccCCccchhcccCCCCcEEEe--cccccCCccccceeecchHHHhhccC---------------------
Q 003466 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVG--------------------- 713 (818)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~~~i~~~l~~--------------------- 713 (818)
+|+|++| ++|.. .+....++ +|+++. .|.++++ ..+|+++.+++.++.+..
T Consensus 157 li~D~~~-~~g~~--~~~~~~~~--~d~~~~s~~K~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (356)
T cd06451 157 LIVDAVS-SLGGE--PFRMDEWG--VDVAYTGSQKALGAP-PGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEG 230 (356)
T ss_pred EEEeeeh-hccCc--cccccccC--ccEEEecCchhccCC-CCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhccc
Confidence 9999998 46532 12222233 576654 6999875 357889898887665431
Q ss_pred --C--hH-------------HHH---------------HHHHHHHHcCCC--eeEEEe-eeeEEEEEEecCcccCCCchH
Q 003466 714 --D--SK-------------LWD---------------LELIQQISSHRT--VQRVVA-LGTLCAIELQAAGCNAGYGSL 758 (818)
Q Consensus 714 --~--~~-------------~~~---------------~~l~~~l~~~~~--v~~vrg-~Gl~~~iel~~~~~~~~~~~~ 758 (818)
. .. .+. +.+.+.+...+. +....+ .+.+..+.+... .
T Consensus 231 ~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--------~ 302 (356)
T cd06451 231 YSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEG--------V 302 (356)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCC--------C
Confidence 0 00 000 112233333321 111111 112222222211 1
Q ss_pred HHHHHHHHHHhC-CceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLRED-GVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 759 ~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
....+++.|.++ ||++.+. ++.+|+++...+|++||++++++|++++
T Consensus 303 ~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 303 DGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred CHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 256789999998 9999852 4689999999999999999999998876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-10 Score=129.09 Aligned_cols=293 Identities=14% Similarity=0.116 Sum_probs=172.4
Q ss_pred CHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCCC-C-CcEEEeCChhHHHHHHHHHHHHHhhhccccccc
Q 003466 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~-l-~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~ 494 (818)
.+.+.+++.++++.. ..+....+..+....+++.+.+..+... . +.++++++|++|+..+++... ..|
T Consensus 35 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~g---- 105 (378)
T PRK07682 35 PWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-----NPG---- 105 (378)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-----CCC----
Confidence 567888888877642 1121123445677788888876533210 1 379999999999999887651 222
Q ss_pred ccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
..|++.+.+|++.... ....|... +.+|...
T Consensus 106 ------------d~vl~~~p~y~~~~~~-~~~~g~~~------------------------------~~~~~~~------ 136 (378)
T PRK07682 106 ------------DEVLIVEPSFVSYAPL-VTLAGGVP------------------------------VPVATTL------ 136 (378)
T ss_pred ------------CEEEEeCCCchhhHHH-HHHcCCEE------------------------------EEeecCC------
Confidence 3788899998853321 11121110 0111000
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
.+ .|. .+ .+.+++.+. +++.++++... ++..|.+. +.+.+++|.++|++||
T Consensus 137 ------~~---~~~--~d--------~~~l~~~~~--------~~~~~v~~~~p-~NPtG~~~-s~~~~~~l~~~~~~~~ 187 (378)
T PRK07682 137 ------EN---EFK--VQ--------PAQIEAAIT--------AKTKAILLCSP-NNPTGAVL-NKSELEEIAVIVEKHD 187 (378)
T ss_pred ------cc---CCC--CC--------HHHHHhhcC--------cccEEEEEECC-CCCcCcCc-CHHHHHHHHHHHHHcC
Confidence 00 000 00 245555553 24556655443 67778755 7899999999999999
Q ss_pred CcEEEeecccCcccCCccch-hcccCCCCc---EEEeccccc-CCccccceeecchHHHhhccCCh--------H-----
Q 003466 655 IPVIFDEVFTGFWRLGVETT-ADLLGCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFVGDS--------K----- 716 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a-~e~~gv~PD---ivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~--------~----- 716 (818)
+++|+||++..|...+.... ....+..+. +.+|||.++ .| +.+|.+++++++++.+.... .
T Consensus 188 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a 266 (378)
T PRK07682 188 LIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFA 266 (378)
T ss_pred cEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 99999999988755443221 121222222 448999998 67 78999999998887653211 0
Q ss_pred ---HHH-----------------HHHHHHHHcCCCeeEEEeeeeEEE-EEEecCcccCCCchHHHHHHHHHHH-hCCceE
Q 003466 717 ---LWD-----------------LELIQQISSHRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLR-EDGVYM 774 (818)
Q Consensus 717 ---~~~-----------------~~l~~~l~~~~~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv 774 (818)
.++ +.+.+.|++++. .-....|.++. +.+.... ..+..+++.|+ ++||++
T Consensus 267 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~p~g~~~~~~~~~~~~-------~~~~~~~~~ll~~~gv~v 338 (378)
T PRK07682 267 ALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIGL-TCHVPGGAFYAFPSISSTG-------LSSEEFAEQLLLEEKVAV 338 (378)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCCeeEEEEEeccCCC-------CCHHHHHHHHHHhCCEEE
Confidence 110 012233444432 21223343333 3332211 12456787776 789999
Q ss_pred eec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 775 RPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 775 ~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.|+ .+.+|++.. .+++++++.+++|.++++++
T Consensus 339 ~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 339 VPGSVFGESGEGFIRCSYA--TSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred cCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHhhc
Confidence 873 267888765 46899999999999887653
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.1e-11 Score=130.47 Aligned_cols=284 Identities=13% Similarity=0.129 Sum_probs=166.6
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
+.||+++|.. .++ . +|++++|++++++....+. .+...++.+.++++++-. .+.+++++++++++..+++
T Consensus 20 ~~i~l~~~~~--~~~-~-~~~~~~a~~~~~~~~~~y~-----~~~~~~lr~~ia~~~~~~-~~~i~~~~G~~~~l~~~~~ 89 (346)
T TIGR01141 20 EVIKLNSNEN--PFG-P-PPKAKEALRAEADKLHRYP-----DPDPAELKQALADYYGVD-PEQILLGNGSDEIIELLIR 89 (346)
T ss_pred ceEEccCCCC--CCC-C-CHHHHHHHHHhHHHhhcCC-----CCCHHHHHHHHHHHhCcC-hHHEEEcCCHHHHHHHHHH
Confidence 7899987432 344 2 7999999999875432221 122356777777776532 3579999999999988877
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... +.| .+|+..+.+|.... ......|..
T Consensus 90 ~l~-----~~g----------------d~v~~~~p~y~~~~-~~~~~~g~~----------------------------- 118 (346)
T TIGR01141 90 AFL-----EPG----------------DAVLVPPPTYSMYE-ISAKIHGAE----------------------------- 118 (346)
T ss_pred Hhc-----CCC----------------CEEEEcCCCHHHHH-HHHHHcCCe-----------------------------
Confidence 651 122 36777776663211 111111110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
.+.+|... + -..| .+.+++.+. .++++|++... ++..|...+
T Consensus 119 -~~~~~~~~--------~-~~~d------------------~~~l~~~~~--------~~~~~v~l~~p-~NptG~~~~- 160 (346)
T TIGR01141 119 -VVKVPLDE--------D-GQLD------------------LEDILVAID--------DKPKLVFLCSP-NNPTGNLLS- 160 (346)
T ss_pred -EEEeccCC--------C-CCCC------------------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCC-
Confidence 00111000 0 0011 134444332 34566776654 777888885
Q ss_pred HHHHHHHHHHHHhc--CCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccccceeecchHHHhhccC
Q 003466 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (818)
Q Consensus 640 ~~fl~~LreLc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~PlsAvl~~~~i~~~l~~ 713 (818)
.++++++|+.+ |+++|+||++..|...+... ......++++ +++|.+| .| +.+|.+++++++.+.+..
T Consensus 161 ---~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~ 234 (346)
T TIGR01141 161 ---RSDIEAVLERTPEDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAG-LRIGYAIANAEIIDALNK 234 (346)
T ss_pred ---HHHHHHHHHhCCCCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchh-hhceeeecCHHHHHHHHh
Confidence 44555555544 99999999998775332221 1112234543 7899995 46 689999999998876642
Q ss_pred Ch------H--------H------H----------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHH
Q 003466 714 DS------K--------L------W----------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASL 763 (818)
Q Consensus 714 ~~------~--------~------~----------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~ 763 (818)
.. . . + .+.+.+.++.++.+.-+...|.++.+++.. .+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~----------~~~~~ 304 (346)
T TIGR01141 235 VRAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLEVYPSDANFVLIRFPR----------DADAL 304 (346)
T ss_pred ccCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEECCCcCCEEEEecCC----------CHHHH
Confidence 11 0 0 0 112334455554433223356666666542 14578
Q ss_pred HHHHHhCCceEeec------CCEEEEECCCCChHHHHHHHHHHH
Q 003466 764 LKKLREDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 764 ~~~l~e~Gvlv~p~------g~~ir~~ppl~~t~edId~~~~~l 801 (818)
++.|.++||++.+. .+.+|+... +++|+++++++|
T Consensus 305 ~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l 345 (346)
T TIGR01141 305 FEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAAL 345 (346)
T ss_pred HHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHh
Confidence 88999999999984 367888854 789999999876
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-10 Score=126.41 Aligned_cols=283 Identities=14% Similarity=0.105 Sum_probs=164.8
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCC-CcEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l-~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
.|.|.+|+... +.+.. ....+...++.++|+++++.+.- ..++++.+|++|++.++....
T Consensus 11 ~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-------------- 71 (355)
T TIGR03301 11 SATVRDAMLVD---WCHWD--SEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-------------- 71 (355)
T ss_pred CHHHHHHhhhh---ccCCC--HHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--------------
Confidence 56666666652 22211 11236677888999998874321 257789999999999998761
Q ss_pred CCCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
..+.++|....+++|.....+ ...|.+. ..++.++.+
T Consensus 72 -------~~~~~vi~~~~~~~~~~~~~~a~~~g~~~----------------------------~~i~~~~~~------- 109 (355)
T TIGR03301 72 -------PRDGKLLVLINGAYGERLAKICEYLGIPH----------------------------TDLNFSEYE------- 109 (355)
T ss_pred -------CCCCeEEEECCCchhhHHHHHHHHcCCce----------------------------EEEecCCCC-------
Confidence 112467777777777532111 1111110 011111000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI-vEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
..| .+.+++.+.+ + .++..|+ +-+ ....|...+ +++|.++|++||
T Consensus 110 ----~~d------------------~~~l~~~l~~-----~-~~~~~v~~~~~--~~~~G~~~~----~~~i~~l~~~~~ 155 (355)
T TIGR03301 110 ----PPD------------------LNRIEEALAA-----D-PDITHVATVHH--ETTTGILNP----LEAIAKVARSHG 155 (355)
T ss_pred ----CCC------------------HHHHHHHHHh-----C-CCceEEEEEec--CCcccchhH----HHHHHHHHHHcC
Confidence 011 2566677652 2 2333333 322 445677765 899999999999
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC--------------------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------------------- 714 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-------------------- 714 (818)
+++|+|++++ ||.. .+....+++..-+.+++|.++|+ .-+|.+++++++++.+...
T Consensus 156 ~~livD~~~s-~g~~--~~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (355)
T TIGR03301 156 AVLIVDAMSS-FGAI--PIDIEELDVDALIASANKCLEGV-PGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGK 231 (355)
T ss_pred CEEEEEeccc-cCCc--ccchhhcCccEEEecCCcccccC-CceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCC
Confidence 9999999984 6532 23333344433345899998764 1258888999887665410
Q ss_pred -----hH------------H-----HH----------HHHHHHHHcCCC-e-e-EEEeeeeEEEEEEecCcccCCCchHH
Q 003466 715 -----SK------------L-----WD----------LELIQQISSHRT-V-Q-RVVALGTLCAIELQAAGCNAGYGSLY 759 (818)
Q Consensus 715 -----~~------------~-----~~----------~~l~~~l~~~~~-v-~-~vrg~Gl~~~iel~~~~~~~~~~~~~ 759 (818)
.. + +. +.+.+.+++++. + . .....|.++.+.+.... ...
T Consensus 232 ~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~ 305 (355)
T TIGR03301 232 WRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDP------DFD 305 (355)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCC------cch
Confidence 00 0 00 011223333332 1 1 11233455555553210 012
Q ss_pred HHHHHHHHHhCCceEeecC----CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPLG----NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~g----~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+..+.+.|.++||++.+.+ +.+|+.+...++++|++++++.|++++
T Consensus 306 ~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 306 FDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred HHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 4578899999999998753 689999988899999999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.1e-10 Score=124.16 Aligned_cols=284 Identities=9% Similarity=0.044 Sum_probs=169.3
Q ss_pred cCCCCCCHHHHHHHHHhhhhcccccCCCC------CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHh
Q 003466 412 GPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 412 ~lGh~~hp~V~eAi~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~ 485 (818)
..|-- .+.+.+|+.+.++.+......+. ......++.+.|+++++....+.++++++|++|+..+++.+.. -
T Consensus 7 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~-~ 84 (373)
T cd06453 7 ATSQK-PQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGR-A 84 (373)
T ss_pred cccCC-CHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhh-c
Confidence 35655 78899999887755422110001 1234556778888888743124799999999999999987621 0
Q ss_pred hhcccccccccCCCccccccceEEEEEcCCCCCCcccccc----ccCCCCCCCcCCCCcccCCCcccCCCcccccCccee
Q 003466 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME----AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561 (818)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als----~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~ 561 (818)
... ..+||+.+.+|-+ ...... ..|.. ...
T Consensus 85 -~~~----------------g~~vl~~~~~~~~-~~~~~~~~~~~~g~~----------------------------~~~ 118 (373)
T cd06453 85 -NKP----------------GDEIVTSVMEHHS-NIVPWQQLAERTGAK----------------------------LKV 118 (373)
T ss_pred -CCC----------------CCEEEECcchhHH-HHHHHHHHHhhcCcE----------------------------EEE
Confidence 001 2356665544433 211110 11110 001
Q ss_pred ecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHH
Q 003466 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL 641 (818)
Q Consensus 562 v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~ 641 (818)
++..... .-| .+.+++.+. +++.+|++.-+ ....|...+
T Consensus 119 v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~~~tG~~~~--- 157 (373)
T cd06453 119 VPVDDDG-----------QLD------------------LEALEKLLT--------ERTKLVAVTHV-SNVLGTINP--- 157 (373)
T ss_pred eecCCCC-----------CcC------------------HHHHHHHhc--------CCceEEEEeCc-ccccCCcCC---
Confidence 1100000 001 255666664 25667777665 667788776
Q ss_pred HHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccCC-----
Q 003466 642 FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD----- 714 (818)
Q Consensus 642 fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~~----- 714 (818)
+++|.++|++||+++|+|++++ +|... +... ...+|+++++ |.+++ ..+|.+++++++++.+...
T Consensus 158 -~~~i~~~~~~~~~~li~D~a~~-~~~~~--~~~~--~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~ 229 (373)
T cd06453 158 -VKEIGEIAHEAGVPVLVDGAQS-AGHMP--VDVQ--DLGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGGGE 229 (373)
T ss_pred -HHHHHHHHHHcCCEEEEEhhhh-cCcee--eecc--ccCCCEEEeccccccCC--CCcEEEEEchHHhhcCCCeecCCC
Confidence 7999999999999999999985 43321 1111 2357999988 99886 3478888888887654320
Q ss_pred ----------------------hH-------------HHH---------------HHHHHHHHcCCCeeEE---EeeeeE
Q 003466 715 ----------------------SK-------------LWD---------------LELIQQISSHRTVQRV---VALGTL 741 (818)
Q Consensus 715 ----------------------~~-------------~~~---------------~~l~~~l~~~~~v~~v---rg~Gl~ 741 (818)
.. .+. +.+.+.+++++.+.-+ ...+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 309 (373)
T cd06453 230 MIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGV 309 (373)
T ss_pred ccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCe
Confidence 00 000 1122344555543322 234556
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~~~l 801 (818)
+.+.+... .+.++.+.|.++||.+.+. ++.+|+++...+|++|+|+++++|
T Consensus 310 ~~~~~~~~---------~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 310 VSFNLEGI---------HPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EEEEECCc---------CHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 66665321 2457888999999998642 368999999999999999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-10 Score=126.23 Aligned_cols=182 Identities=19% Similarity=0.216 Sum_probs=119.3
Q ss_pred HHHHHHHhcCCCCCCCC-cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-c-h-hcc
Q 003466 602 SYISQNLLQNPGLKVSG-CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-T-T-ADL 677 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~-~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~-a-~e~ 677 (818)
+.|++.+++. .... ++.+|++... ++..|... +.+.+++|.++|++||+++|+||++..+ ..+.. + . ...
T Consensus 133 ~~l~~~l~~~---~~~~~~~~~v~~~~p-~nPtG~~~-~~~~l~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~ 206 (363)
T PF00155_consen 133 EALEEALDEL---PSKGPRPKAVLICNP-NNPTGSVL-SLEELRELAELAREYNIIIIVDEAYSDL-IFGDPDFGPIRSL 206 (363)
T ss_dssp HHHHHHHHTS---HTTTETEEEEEEESS-BTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTG-BSSSSHTHHHHGH
T ss_pred cccccccccc---cccccccceeeeccc-cccccccc-ccccccchhhhhcccccceeeeeceecc-ccCCCccCccccc
Confidence 5677777642 1122 4567777765 77788766 8899999999999999999999999766 44432 1 1 222
Q ss_pred cCCCCc-EE--Eeccccc-CCccccceeecchHHHhhccCChH--------------------H---HH-----------
Q 003466 678 LGCVPD-IA--CYGKLLT-GGVIPLAATLATNAVFDSFVGDSK--------------------L---WD----------- 719 (818)
Q Consensus 678 ~gv~PD-iv--tlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~~--------------------~---~~----------- 719 (818)
..-.++ ++ ++||++| -| +.+|++++++++++.+..... . +.
T Consensus 207 ~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 285 (363)
T PF00155_consen 207 LDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENR 285 (363)
T ss_dssp HTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeeeeccccccccc-cccccccchhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHH
Confidence 233344 33 7999997 57 688999999988876643211 0 10
Q ss_pred HHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEECCCCChHH
Q 003466 720 LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGPCSSPE 792 (818)
Q Consensus 720 ~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~ppl~~t~e 792 (818)
+.+.+.+++.+ +.-... .|.++-+.+.. ..+..+++.|+++ ||++.|. .+.+|++. ..++++
T Consensus 286 ~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e 354 (363)
T PF00155_consen 286 DLLREALEEIG-ITVLPPEAGFFLWVRLDP---------NDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEE 354 (363)
T ss_dssp HHHHHHHHHTT-SEEEHHSBSSEEEEEESH---------HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHH
T ss_pred HHHHHHHHHhh-hheeeccCccEEEEEccc---------chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHH
Confidence 11233344442 222222 34444444432 1467789999998 9999983 36899999 789999
Q ss_pred HHHHHHHHH
Q 003466 793 VCSQLLLKL 801 (818)
Q Consensus 793 dId~~~~~l 801 (818)
++++++++|
T Consensus 355 ~~~~~~~~l 363 (363)
T PF00155_consen 355 DLEEALERL 363 (363)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-11 Score=127.77 Aligned_cols=324 Identities=14% Similarity=0.127 Sum_probs=197.6
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC----CCCCChhHHHHHHH
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAEL 451 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~----~~~~~~~~~eLae~ 451 (818)
+.++++.-+.+ ..+||+ .++++.| ++.+|+..++++.+.+...+.+||.+.. +-++-+.|..|+++
T Consensus 78 ~~v~e~~~~~~---~~i~G~----~~~N~aS---~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~ 147 (467)
T KOG1358|consen 78 TPVLESVMLPH---VTIDGK----DVLNFAS---ANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKR 147 (467)
T ss_pred CcccccccCCc---eEecCc----eeecccc---hhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHH
Confidence 34567777764 336899 9999999 7788877799999999999999976531 12346789999999
Q ss_pred HHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 452 L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
|+.++|- +..+..+-|-.+++.++..- ..|.+||+.+..-|=...-++.++...
T Consensus 148 iakF~G~---E~aivYs~gF~ti~S~ipaf----------------------sKrGDIi~~de~~nfaIq~GlqlSRS~- 201 (467)
T KOG1358|consen 148 IAKFMGT---EDAIVYSYGFSTIESAIPAF----------------------SKRGDIIFVDEAVNFAIQKGLQLSRST- 201 (467)
T ss_pred HHHhhCC---cceeeeccccchhhhcchhh----------------------hccCcEEEEehhhhHHHHHHHhhhhhe-
Confidence 9999984 55555568899999998853 334578888776553222222222111
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
..+ +.|||+ +.+|+.+.+.
T Consensus 202 -------------i~~------------------------------Fkhndm------------------~~lerll~E~ 220 (467)
T KOG1358|consen 202 -------------ISY------------------------------FKHNDM------------------EDLERLLPEQ 220 (467)
T ss_pred -------------eEE------------------------------ecCCCH------------------HHHHHhccCc
Confidence 000 126776 3444444332
Q ss_pred CCC--CCCCc---EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc--cchhcccCCCC--
Q 003466 612 PGL--KVSGC---IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVP-- 682 (818)
Q Consensus 612 ~~~--~~~~~---iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~P-- 682 (818)
... +++.+ ..-+++|.+ ....|.+.| +++|.++..||..-+|+||-.+ ||-.|+ .+..+|+|+.+
T Consensus 221 ~~~~~K~~k~~~~Rrfiv~EGl-~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~GrGvteH~~v~~~~ 294 (467)
T KOG1358|consen 221 EDEDQKNPKKALTRRFIVVEGL-YANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTGRGVTEHFGVPITD 294 (467)
T ss_pred chhhhhccccccceEEEEEEee-ccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccCccccccCCCCccc
Confidence 100 22222 468999998 677788887 9999999999999999999985 666666 56679999864
Q ss_pred -cEEEe--ccccc--CCccccceeecchHHHhh--ccCChH--------HHH-------------HHHHHHHH-----cC
Q 003466 683 -DIACY--GKLLT--GGVIPLAATLATNAVFDS--FVGDSK--------LWD-------------LELIQQIS-----SH 729 (818)
Q Consensus 683 -Divtl--gKgLg--gGy~PlsAvl~~~~i~~~--l~~~~~--------~~~-------------~~l~~~l~-----~~ 729 (818)
|+++. .-+|+ ||+ ++++.-+.+. +.+.+. ++. .+..+.+. .|
T Consensus 295 iDiv~~sm~~alas~GgF-----c~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H 369 (467)
T KOG1358|consen 295 IDIVTASMETALASGGGF-----CAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFH 369 (467)
T ss_pred eeeeeecccccccccCce-----eecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccc
Confidence 56543 33443 454 5555444432 111111 111 01111111 11
Q ss_pred CCee-----EEEee--eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-----------cCCEEEEECCCCChH
Q 003466 730 RTVQ-----RVVAL--GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-----------LGNVIYLMCGPCSSP 791 (818)
Q Consensus 730 ~~v~-----~vrg~--Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-----------~g~~ir~~ppl~~t~ 791 (818)
+... .+.|. ..++-+.+........-....-..++..|+.+|+++.. -...||++....+++
T Consensus 370 ~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~se 449 (467)
T KOG1358|consen 370 AALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSE 449 (467)
T ss_pred hhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeCCCCH
Confidence 1111 11111 11222222211000000112355678888877988863 125899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003466 792 EVCSQLLLKLYQRLEE 807 (818)
Q Consensus 792 edId~~~~~l~~~l~~ 807 (818)
|||+++.+.+++...+
T Consensus 450 eel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 450 EELERAAELIKEVASA 465 (467)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999877543
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-09 Score=123.01 Aligned_cols=299 Identities=9% Similarity=0.037 Sum_probs=175.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC------CChhHHHHHHHHHhccCCCCCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA 473 (818)
-|||..+ .|.- .+.+.+|+.+.+.........+. ..+...++.+.++++++....+.++|++++++|
T Consensus 18 iyld~a~------~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~ 90 (398)
T TIGR03392 18 VYLDSAA------TALK-PQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTES 90 (398)
T ss_pred EEeeCcc------ccCC-CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHH
Confidence 6788654 5655 78999999887754321110000 123345677788888874223579999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc---cccCCCCCCCcCCCCcccCCCcccCC
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM---EAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al---s~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
+..++... ....-.. ..+||+.+..|++...... ...|..
T Consensus 91 l~~~~~~~-~~~~~~~----------------gd~Vl~~~~~~~s~~~~~~~~~~~~g~~-------------------- 133 (398)
T TIGR03392 91 INLVAQSY-ARPRLQP----------------GDEIIVSEAEHHANLIPWLMVAQQTGAK-------------------- 133 (398)
T ss_pred HHHHHHHh-hhccCCC----------------CCEEEECCcchhHHHHHHHHHHHHcCcE--------------------
Confidence 99988754 1000011 1368887777776321111 111110
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
...++.+..+ ..| .+.+++.+. +++.+|++.-+ +
T Consensus 134 --------v~~v~~~~~~-----------~~~------------------~~~l~~~i~--------~~t~lv~i~~~-~ 167 (398)
T TIGR03392 134 --------VVKLPIGADL-----------LPD------------------IRQLPELLT--------PRTRILALGQM-S 167 (398)
T ss_pred --------EEEEecCCCC-----------CcC------------------HHHHHHHhc--------cCceEEEEECc-c
Confidence 0011111000 001 145666664 23456666654 7
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHH
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~ 708 (818)
...|.+.+ +++|.++|++||+++|+|++|. +|.. . .......+|++++| |.+|- .-+|.+.++++++
T Consensus 168 n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-~---~~~~~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~ 236 (398)
T TIGR03392 168 NVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-P---PDVQALDIDFYAFSGHKLYGP--TGIGVLYGKTELL 236 (398)
T ss_pred ccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-C---CChhhcCCCEEEEecccccCC--CceEEEEEcHHHH
Confidence 77888876 8999999999999999999994 4322 1 11122347999999 96542 1267788888876
Q ss_pred hhccC---------------------------ChH-------------HH---------------HHHHHHHHHcCCCee
Q 003466 709 DSFVG---------------------------DSK-------------LW---------------DLELIQQISSHRTVQ 733 (818)
Q Consensus 709 ~~l~~---------------------------~~~-------------~~---------------~~~l~~~l~~~~~v~ 733 (818)
+.+.. +.. .+ .+.+.+.+...+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~ 316 (398)
T TIGR03392 237 EAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFR 316 (398)
T ss_pred hhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 54421 000 11 111223344444332
Q ss_pred EEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHHHHHHH
Q 003466 734 RVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 734 ~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~~ 799 (818)
-.. ....++.+.+... .+..+.+.|.++||.++++ ++.+|+++....|++||+++++
T Consensus 317 ~~~~~~~~i~~~~~~~~---------~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~ 387 (398)
T TIGR03392 317 SFRCPGSSLLAFDFAGV---------HHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVD 387 (398)
T ss_pred EeCCCCCcEEEEEeCCc---------CHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHH
Confidence 111 1233454444321 1346778889999999852 2579999999999999999999
Q ss_pred HHHHHHHHH
Q 003466 800 KLYQRLEEF 808 (818)
Q Consensus 800 ~l~~~l~~l 808 (818)
+|+++++.+
T Consensus 388 ~l~~~~~~~ 396 (398)
T TIGR03392 388 AVGAALELL 396 (398)
T ss_pred HHHHHHHHh
Confidence 999987754
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-10 Score=127.59 Aligned_cols=289 Identities=9% Similarity=0.021 Sum_probs=167.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+.++.. .+| . +|.+.+|+.++++.+.+... .-..+|.+.+++.++-. .+.+++++++++|...+++
T Consensus 30 ~~i~l~~n~~--~~~-~-~~~v~~a~~~~~~~~~~~p~-----~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 99 (359)
T PRK03158 30 KIVKLASNEN--PYG-P-SPKVKEAIAAHLDELALYPD-----GYAPELRTKVAKHLGVD-EEQLLFGAGLDEVIQMISR 99 (359)
T ss_pred ceEEecCCCC--CCC-C-CHHHHHHHHHHHHHhhcCCC-----CcHHHHHHHHHHHhCCC-HHHEEECCCHHHHHHHHHH
Confidence 6788877432 355 3 79999999998876543321 12345556666655422 3689999999998887766
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... +.| ..|++.+.+|++....+ ...|...
T Consensus 100 ~~~-----~~g----------------d~v~~~~p~y~~~~~~~-~~~g~~~---------------------------- 129 (359)
T PRK03158 100 ALL-----NPG----------------TNTVMAEPTFSQYRHNA-IIEGAEV---------------------------- 129 (359)
T ss_pred HHh-----CCC----------------CEEEEcCCCHHHHHHHH-HHcCCeE----------------------------
Confidence 541 122 36888888888733211 1111110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..++..+ + ..| .+.+++.+. .++.++++... ++..|.+.+
T Consensus 130 ~~~~~~~-~-----------~~d------------------~~~l~~~~~--------~~~~~v~i~~p-~NPtG~~~~- 169 (359)
T PRK03158 130 REVPLKD-G-----------GHD------------------LEAMLKAID--------EQTKIVWICNP-NNPTGTYVN- 169 (359)
T ss_pred EEEecCC-C-----------CcC------------------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCC-
Confidence 0111100 0 001 134444442 24456666554 888998885
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCCCC-cEE--Eeccccc-CCccccceeecchHHHhhccCC
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVP-DIA--CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~P-Div--tlgKgLg-gGy~PlsAvl~~~~i~~~l~~~ 714 (818)
.+-+.++.+.|+ +|+++|+||++..|-..+. .......+-.+ .++ +|||.+| .| +.+|.+++++++++.+...
T Consensus 170 ~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~ 247 (359)
T PRK03158 170 HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAA-LRVGYGIASEELIEKLNIA 247 (359)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcc-hhhehhcCCHHHHHHHHHh
Confidence 443444444442 6999999999976522111 11111111112 233 8999998 67 7999999999988765321
Q ss_pred hH--------------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHH
Q 003466 715 SK--------------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL 764 (818)
Q Consensus 715 ~~--------------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~ 764 (818)
.. .+ .+.+.+.+++++ +..+...|.++-+.+..+ +..++
T Consensus 248 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~g~~i~~~~~~~----------~~~~~ 316 (359)
T PRK03158 248 RPPFNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEYG-LFYYPSQTNFIFVDTGRD----------ANELF 316 (359)
T ss_pred cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeCCCcCcEEEEECCCC----------HHHHH
Confidence 10 00 011223344443 323445566666655311 45688
Q ss_pred HHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 765 KKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 765 ~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
+.|.++||++.|+ .+.+|+... +++|+++++++|+++
T Consensus 317 ~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~ 358 (359)
T PRK03158 317 EALLKKGYIVRSGAALGFPTGVRITIG---LKEQNDKIIELLKEL 358 (359)
T ss_pred HHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHh
Confidence 8999999999983 367888754 789999999999775
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-10 Score=125.71 Aligned_cols=300 Identities=11% Similarity=0.018 Sum_probs=164.8
Q ss_pred CCCCCHHHHHHHHHhhhhcccccCCC-----CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhc
Q 003466 414 DATLQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488 (818)
Q Consensus 414 Gh~~hp~V~eAi~~q~~~~~~~~~~~-----~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~ 488 (818)
|+- .|++++++.+....++...+.. ..++...++.+++++++| .+.++++++|++|+..++.... .
T Consensus 11 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g---~~~i~~~~g~t~al~~~l~~~~-----~ 81 (361)
T cd06452 11 GRL-TPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLG---MDEARVTPGAREGKFAVMHSLC-----E 81 (361)
T ss_pred CCC-CHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcC---CceEEEeCCHHHHHHHHHHHhc-----C
Confidence 556 7787777777664443322111 124678899999999987 3789999999999999887651 1
Q ss_pred ccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchh
Q 003466 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (818)
Q Consensus 489 ~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~ 568 (818)
+| .+|++...+|.+ ...++...|... +.+|...
T Consensus 82 ~g----------------d~Vl~~~~~~~~-~~~~~~~~g~~~------------------------------~~v~~~~ 114 (361)
T cd06452 82 KG----------------DWVVVDGLAHYT-SYVAAERAGLNV------------------------------REVPNTG 114 (361)
T ss_pred CC----------------CEEEEcCCcchH-HHHHHHhcCCEE------------------------------EEEecCC
Confidence 22 245555444433 332222222110 0011000
Q ss_pred hhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHH
Q 003466 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (818)
Q Consensus 569 ~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~Lre 648 (818)
. ++. ..| .+.+++.+.+.. .....++.+|++... .+..|...+ +++|.+
T Consensus 115 ~------~~~-~~d------------------~~~l~~~l~~~~-~~~~~~~~lv~l~~p-~n~tG~~~~----~~~i~~ 163 (361)
T cd06452 115 H------PEY-HIT------------------PEGYAEVIEEVK-DEFGKPPALALLTHV-DGNYGNLHD----AKKIAK 163 (361)
T ss_pred C------CCc-ccC------------------HHHHHHHHHHHh-hccCCCceEEEEECC-CCCCeeecc----HHHHHH
Confidence 0 000 001 144555554200 000135667776654 566676554 899999
Q ss_pred HHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh-------------
Q 003466 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS------------- 715 (818)
Q Consensus 649 Lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~------------- 715 (818)
+|+++|+++|+||++. +|... +....+|..-.+.+++|.++++ .++|.+++++++++.+....
T Consensus 164 ~~~~~~~~vivD~a~~-~g~~~--~~~~~~~~d~~~~s~~K~l~~~-~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 239 (361)
T cd06452 164 VCHEYGVPLLLNGAYT-VGRMP--VSGKELGADFIVGSGHKSMAAS-APIGVLATTEEWADIVFRTSQMFKIKEVELLGC 239 (361)
T ss_pred HHHHcCCeEEEECCcc-cCCcC--CCHHHcCCCEEEecCCccccCC-CCeEEEEECHHHHHHHhccccccccceeeeecc
Confidence 9999999999999994 44322 2223345422344788999876 48899999998887753210
Q ss_pred ------H--------HHH-------------HHHHHHHHcCCCeeEE---EeeeeEEEEEEecCcccCCCchHHHHHHHH
Q 003466 716 ------K--------LWD-------------LELIQQISSHRTVQRV---VALGTLCAIELQAAGCNAGYGSLYAASLLK 765 (818)
Q Consensus 716 ------~--------~~~-------------~~l~~~l~~~~~v~~v---rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~ 765 (818)
. .+. +.+.+.+++.+.+.-+ .+...++.++...-..........+..+.+
T Consensus 240 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (361)
T cd06452 240 TLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYS 319 (361)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHH
Confidence 0 000 1223334444332111 011123333321000000000112346889
Q ss_pred HHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 766 KLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 766 ~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.|+++||+....+ ..+|+.. +-+|++|++.++++|++++
T Consensus 320 ~L~~~gI~~~~~~~~~~~ri~~-~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 320 ELKKRGIHGIKPGLTRYFKLST-YGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred HHHHcCceEEcCCCceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence 9999999975433 4566665 4479999999999998653
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-09 Score=123.46 Aligned_cols=298 Identities=10% Similarity=0.060 Sum_probs=176.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCC------CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE------NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~------~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA 473 (818)
-|||-.+ .|-- .+.+.+|+.+.++........+ ...+...++.++|+++++....+.++|+++++++
T Consensus 21 ~yld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~ 93 (401)
T PRK10874 21 VYLDSAA------TALK-PQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTES 93 (401)
T ss_pred EEEeCCc------ccCC-CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHH
Confidence 6788554 5555 7889999988776532111000 0133455677788888875224679999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc---cCCCCCCCcCCCCcccCCCcccCC
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~---tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
+..+++.... -.-+.| .+||+.+..|++....-..+ .|..
T Consensus 94 i~~~~~~~~~-~~~~~g----------------d~vl~~~~~~~s~~~~~~~~~~~~g~~-------------------- 136 (401)
T PRK10874 94 INLVAQSYAR-PRLQPG----------------DEIIVSEAEHHANLVPWLMVAQQTGAK-------------------- 136 (401)
T ss_pred HHHHHHHhhh-ccCCCc----------------CEEEECCcchHHHHHHHHHHHHHhCCE--------------------
Confidence 9998876510 000111 36888888777632111111 1110
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
...++.+..+ ..| .+.+++.+. .++.+|++.-+ +
T Consensus 137 --------v~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~lv~i~~~-~ 170 (401)
T PRK10874 137 --------VVKLPLGADR-----------LPD------------------VDLLPELIT--------PRTRILALGQM-S 170 (401)
T ss_pred --------EEEEecCCCC-----------cCC------------------HHHHHHhcC--------cCcEEEEEeCC-c
Confidence 0011111000 001 245666553 24456666665 7
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--cccc-CCccccceeecchHH
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLT-GGVIPLAATLATNAV 707 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLg-gGy~PlsAvl~~~~i 707 (818)
...|.+.+ +++|.++|+++|+++|+|++|. +|..- .......+|+++++ |.+| .| +|.+.+++++
T Consensus 171 n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~ 238 (401)
T PRK10874 171 NVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP----ADVQALDIDFYAFSGHKLYGPTG---IGVLYGKSEL 238 (401)
T ss_pred ccccCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc----CCchhcCCCEEEEecccccCCCc---cEEEEEchHH
Confidence 77888876 8999999999999999999994 43321 11122347988777 9654 23 4777888887
Q ss_pred HhhccC---------------------------ChH-------------HH---------------HHHHHHHHHcCCCe
Q 003466 708 FDSFVG---------------------------DSK-------------LW---------------DLELIQQISSHRTV 732 (818)
Q Consensus 708 ~~~l~~---------------------------~~~-------------~~---------------~~~l~~~l~~~~~v 732 (818)
++.+.. +.. .+ .+.+.+.+++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~ 318 (401)
T PRK10874 239 LEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGF 318 (401)
T ss_pred HhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 765420 000 01 11123344455443
Q ss_pred eEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHHHHHH
Q 003466 733 QRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLL 798 (818)
Q Consensus 733 ~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~ 798 (818)
.-+. ..+.++.+.+... .+..+.+.|.++||.++++ .+.+|+++....|++|||+++
T Consensus 319 ~~~~~~~~~i~~~~~~~~---------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll 389 (401)
T PRK10874 319 RSFRCQDSSLLAFDFAGV---------HHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALV 389 (401)
T ss_pred EEeCCCCCcEEEEEECCc---------CHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHH
Confidence 3221 1233455544321 1356778889999999762 257999999999999999999
Q ss_pred HHHHHHHHHH
Q 003466 799 LKLYQRLEEF 808 (818)
Q Consensus 799 ~~l~~~l~~l 808 (818)
++|+++++.+
T Consensus 390 ~al~~~~~~~ 399 (401)
T PRK10874 390 NAVDRALELL 399 (401)
T ss_pred HHHHHHHHHh
Confidence 9999987754
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-10 Score=128.14 Aligned_cols=295 Identities=12% Similarity=0.121 Sum_probs=169.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+|++..+ ..++..+|++.+|+.+.+.....+. .+...+|.+.|++..+-. -+.++++++.+++...+++
T Consensus 33 ~~~~l~~~----~~~~~~~~~~~~a~~~~~~~~~~Y~-----~~~~~~Lr~~ia~~~~~~-~~~I~it~G~~~~l~~~~~ 102 (369)
T PRK08153 33 FRARIGAN----ESGFGPSPSVIAAMREAAAEIWKYG-----DPENHDLRHALAAHHGVA-PENIMVGEGIDGLLGLIVR 102 (369)
T ss_pred ceeEecCC----CCCCCCCHHHHHHHHHHHHHhhcCC-----CCccHHHHHHHHHHhCCC-HHHEEEcCCHHHHHHHHHH
Confidence 35677653 2244447899999998765432211 111456777777766532 2578988888888887777
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.. ...| ..|++.+.+|.+....+ ...|..
T Consensus 103 ~~-----~~~g----------------d~vlv~~p~y~~~~~~~-~~~g~~----------------------------- 131 (369)
T PRK08153 103 LY-----VEPG----------------DPVVTSLGAYPTFNYHV-AGFGGR----------------------------- 131 (369)
T ss_pred Hh-----cCCC----------------CEEEECCCcchHHHHHH-HHcCCe-----------------------------
Confidence 54 1122 25666666666533111 111111
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCCCcccC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAGGMHMV 638 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAV-IvEPV~~g~gG~~~~ 638 (818)
.+.+|. .++. . . .+.+++.+. ..++.+| +..| +...|.+.
T Consensus 132 -~~~vp~-------------~~~~-------~---~-----~~~l~~~~~-------~~~~~~i~l~~P--~NPtG~~~- 172 (369)
T PRK08153 132 -LVTVPY-------------RDDR-------E---D-----LDALLDAAR-------RENAPLVYLANP--DNPMGSWH- 172 (369)
T ss_pred -EEEeeC-------------CCCC-------C---C-----HHHHHHHhc-------ccCCcEEEEeCC--CCCCCCCC-
Confidence 111120 0110 0 0 123333332 2234444 4477 45557766
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcE---EEeccccc-CCccccceeecchHHHhhccCC
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi---vtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~ 714 (818)
+.+.++++.++|++ |+++|+||++..|+..|...... ...|++ -+|||.+| .| +.+|.+++++++++.+...
T Consensus 173 ~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~G-lRiG~~v~~~~~~~~l~~~ 248 (369)
T PRK08153 173 PAADIVAFIEALPE-TTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAG-ARVGYAIGAPGTIKAFDKV 248 (369)
T ss_pred CHHHHHHHHHhCCC-CcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcc-hheeeeecCHHHHHHHHHh
Confidence 66677777777764 99999999998886544322111 123453 38999998 78 7999999999988765321
Q ss_pred hH--------------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHH
Q 003466 715 SK--------------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL 764 (818)
Q Consensus 715 ~~--------------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~ 764 (818)
.. .+ .+.+.+.++.++. ......|.++-+.+..+ ...+..+.
T Consensus 249 ~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g~-~~~p~~~~f~~~~~~~~-------~~~a~~l~ 320 (369)
T PRK08153 249 RNHFGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARANGL-TPLPSATNFVAIDCGRD-------GAFARAVL 320 (369)
T ss_pred hcCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCcCcEEEEECCCC-------cccHHHHH
Confidence 10 00 0112233444432 11223455555544321 13467889
Q ss_pred HHHHhCCceEe-ec----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 765 KKLREDGVYMR-PL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 765 ~~l~e~Gvlv~-p~----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+.|+++||+++ |. .+.+|++.. +++|++.++++|++++..++
T Consensus 321 ~~l~~~Gi~v~~p~~~~~~~~iRis~~---~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 321 DGLIARDIFVRMPGVAPLDRCIRVSCG---PDEELDLFAEALPEALEAAR 367 (369)
T ss_pred HHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHHHhh
Confidence 99999999996 42 256787754 68999999999999886543
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-10 Score=125.06 Aligned_cols=292 Identities=13% Similarity=0.050 Sum_probs=167.0
Q ss_pred eeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHH
Q 003466 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 480 (818)
Q Consensus 401 ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALkl 480 (818)
+||+.| +.+-| - +|.+.+|+.+.......+ +..+...+|.++|++..| .+.+.++++|++|+..++..
T Consensus 1 ~~~~~~---~~~~~-p-~~~~~~a~~~~~~~~~~Y----~~~~~~~~L~~~la~~~g---~~~~~v~~~g~~a~~~~l~~ 68 (333)
T PRK10534 1 MIDLRS---DTVTR-P-SRAMLEAMMAAPVGDDVY----GDDPTVNALQDYAAELSG---KEAALFLPTGTQANLVALLS 68 (333)
T ss_pred Cccccc---ccCCC-C-CHHHHHHHHhccCCCccc----CCCHHHHHHHHHHHHHhC---CCeEEEeCchHHHHHHHHHH
Confidence 478888 66667 6 899999998755433211 145678899999999987 46778899999999888875
Q ss_pred HHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccc--ccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 481 AFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 481 A~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a--ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
. -..| .+|+... .+|...+.+ ....+..
T Consensus 69 ~-----~~~g----------------d~vi~~~-~~~~~~~~~~~~~~~~~~---------------------------- 98 (333)
T PRK10534 69 H-----CERG----------------EEYIVGQ-AAHNYLYEAGGAAVLGSI---------------------------- 98 (333)
T ss_pred h-----cCCC----------------CeeEEec-hhhhhHhcCCchHHhcCc----------------------------
Confidence 4 1122 2455433 333221111 0111100
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
..+.+|... +. ..| .+.+++.+.... .+..+..+|+++.- . .|.+.
T Consensus 99 -~~~~~~~~~--------~~-~~d------------------~~~l~~~i~~~~--~~~~~~~lv~l~np-~--~G~v~- 144 (333)
T PRK10534 99 -QPQPIDAAA--------DG-TLP------------------LDKVAAKIKPDD--IHFARTRLLSLENT-H--NGKVL- 144 (333)
T ss_pred -eEEeecCCC--------CC-CCC------------------HHHHHHhhcccC--cCcccceEEEEecC-C--CCeec-
Confidence 000011000 00 011 144555553100 01114567777743 3 36666
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccC---CccchhcccCCCCc--EEEecccccCCccccc-eeecchHHHhhcc
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRL---GVETTADLLGCVPD--IACYGKLLTGGVIPLA-ATLATNAVFDSFV 712 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRt---G~~~a~e~~gv~PD--ivtlgKgLggGy~Pls-Avl~~~~i~~~l~ 712 (818)
+.+.++++.++|++||+++|+||++. |+.. |.... ...-.+| +++|||+.+. ++| ++++++++++.+.
T Consensus 145 ~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~--~~~~~~~~~~~s~SK~~~~---~~G~~~~~~~~~i~~~~ 218 (333)
T PRK10534 145 PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCELK--EITQYCDSFTICLSKGLGT---PVGSLLVGNRDYIKRAR 218 (333)
T ss_pred CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHH--HHHhcCCEEEEEeEcCCCC---cccceEEcCHHHHHHHH
Confidence 68888999999999999999999875 5322 21111 0001224 4589997663 466 4778888877653
Q ss_pred CCh-----------H-------HHH-------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHH
Q 003466 713 GDS-----------K-------LWD-------------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 713 ~~~-----------~-------~~~-------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
... . .++ +.+.+.|++.+. .-....+.++-+.+.. ..+.
T Consensus 219 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~~~~~nfv~~~~~~---------~~~~ 288 (333)
T PRK10534 219 RWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQLREAGA-DVMRQDTNMLFVRVGE---------EQAA 288 (333)
T ss_pred HHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC-ccCCCCceEEEEECCc---------hhHH
Confidence 210 0 111 112333444432 1112234444444321 1245
Q ss_pred HHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+.+.|+++||++++. ..+|+...+.+|++++++++++|++.+
T Consensus 289 ~~~~~l~~~gi~v~~~-~~~rl~~~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 289 ALGEYMRERNVLINAS-PIVRLVTHLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred HHHHHHHHcCeeecCC-ceEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 6788999999999875 457777766789999999999998665
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-10 Score=123.80 Aligned_cols=288 Identities=12% Similarity=0.100 Sum_probs=162.6
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCCh-hHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SG-seA~e~AL 478 (818)
++||+.++. +.+| . .|.+.+++.+.+..+... ..+...+|.+.++++++-. .+.++++.+| ++++..++
T Consensus 35 ~~i~l~~~~--~~~~-~-~~~~~~~~~~~~~~~~~y-----~~~~~~~lr~~ia~~~~~~-~~~i~~~~~Ga~~~i~~~~ 104 (361)
T PRK00950 35 SIIKLGSNE--NPLG-P-SPKAVEAIEKELSKIHRY-----PEPDAPELREALSKYTGVP-VENIIVGGDGMDEVIDTLM 104 (361)
T ss_pred ceEEccCCC--CCCC-C-CHHHHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHhCCC-HHHEEEeCCCHHHHHHHHH
Confidence 788887642 3566 3 689999998877654321 1222367778888877532 2578874455 56667776
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
+.. .+.| ..|++.+.+|..... ++...|...
T Consensus 105 ~~~-----~~~g----------------d~vlv~~p~y~~~~~-~~~~~g~~~--------------------------- 135 (361)
T PRK00950 105 RTF-----IDPG----------------DEVIIPTPTFSYYEI-SAKAHGAKP--------------------------- 135 (361)
T ss_pred HHh-----cCCC----------------CEEEEcCCChHHHHH-HHHHcCCEE---------------------------
Confidence 654 1122 256666666654221 111111110
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCccc
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHM 637 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~ 637 (818)
..++.+..+ -.| .+.+++.+. .++.++++ .| ++..|.+.
T Consensus 136 -~~~~~~~~~-----------~~~------------------~~~l~~~~~--------~~~~~v~~~~p--~nptG~~~ 175 (361)
T PRK00950 136 -VYAKREEDF-----------SLD------------------VDSVLNAIT--------EKTKVIFLCTP--NNPTGNLI 175 (361)
T ss_pred -EEeecCCCC-----------CcC------------------HHHHHHHhc--------cCCCEEEEeCC--CCCCCCCc
Confidence 001000000 000 144555553 23344444 55 67778877
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcccCCCCcEEEeccccc-CCccccceeecchHHHhhccCCh
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~ 715 (818)
+ .+++.++|+++|+++|+||++.+|. .+.... ...++-.--+.+|||.+| .| +.+|.+++++++++.+....
T Consensus 176 ~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~ 249 (361)
T PRK00950 176 P----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAG-LRIGYGFVPEWLIDYYMRAK 249 (361)
T ss_pred C----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCch-hhcchhcCCHHHHHHHHHhc
Confidence 6 5688899999999999999998774 122111 111111111338999998 67 78899999998886553211
Q ss_pred H--------------------HHHH------HHHHHH-HcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHH
Q 003466 716 K--------------------LWDL------ELIQQI-SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR 768 (818)
Q Consensus 716 ~--------------------~~~~------~l~~~l-~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~ 768 (818)
. .+.+ +.++.+ +... +.-....|.++-+.+. . ..+..+++.|.
T Consensus 250 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~-~~~~~~~~~~i~~~~~-~--------~~~~~~~~~l~ 319 (361)
T PRK00950 250 TPFSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP-FKVYPSEANFVLVDVT-P--------MTAKEFCEELL 319 (361)
T ss_pred CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC-eeECCCcceEEEEECC-C--------CCHHHHHHHHH
Confidence 0 0110 111112 1122 1111223444445552 1 12567889999
Q ss_pred hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 769 EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 769 e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
++||+++++ .+.+|++.. +++++++++++|++++
T Consensus 320 ~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 320 KRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred HCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 999999862 247888865 6789999999998765
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.6e-10 Score=123.71 Aligned_cols=299 Identities=11% Similarity=0.070 Sum_probs=170.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
-|+|..+ .|.- ++.+++|+.+.++.......... ..+...++.+.|+++++.. -+.++|++++++|+
T Consensus 2 ~yld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~~~g~t~a~ 73 (381)
T PRK02948 2 IYLDYAA------TTPM-SKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGE-EQGIYFTSGGTESN 73 (381)
T ss_pred EeccCCC------CCCC-CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHH
Confidence 3677543 5556 89999999987765321111001 1245667778888888643 36799999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
..+++.+.+... ++.+.|......|.+........... |..
T Consensus 74 ~~~~~~~~~~~~------------------~~g~~vv~~~~~h~s~~~~~~~~~~~--------------g~~------- 114 (381)
T PRK02948 74 YLAIQSLLNALP------------------QNKKHIITTPMEHASIHSYFQSLESQ--------------GYT------- 114 (381)
T ss_pred HHHHHHHHHhcc------------------CCCCEEEECCcccHHHHHHHHHHHhC--------------CCE-------
Confidence 999887632110 11234555566666543332211000 000
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
...++..... ..| .+.+++.+. ++...|+++-+ .+..|
T Consensus 115 ----v~~v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~~~~~-~n~tG 152 (381)
T PRK02948 115 ----VTEIPVDKSG-----------LIR------------------LVDLERAIT--------PDTVLASIQHA-NSEIG 152 (381)
T ss_pred ----EEEEeeCCCC-----------CCC------------------HHHHHHhcC--------CCCEEEEEECC-cCCcE
Confidence 0001110000 111 245555553 23467778876 78889
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHH-Hhhc
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV-FDSF 711 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i-~~~l 711 (818)
.+.+ +++|.++|+++|+++|+|++| .||.... ..+.++ .|++ +++|.+|- .-+|++++++++ +...
T Consensus 153 ~~~~----~~~I~~l~~~~~~~vivD~~~-~~g~~~~--~~~~~~--~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~ 221 (381)
T PRK02948 153 TIQP----IAEIGALLKKYNVLFHSDCVQ-TFGKLPI--DVFEMG--IDSLSVSAHKIYGP--KGVGAVYINPQVRWKPV 221 (381)
T ss_pred eehh----HHHHHHHHHHcCCEEEEEChh-hcccccc--CcccCC--CCEEEecHHhcCCC--CcEEEEEEcCCCCCCCc
Confidence 8886 889999999999999999988 5765432 122333 5765 68897651 115667667654 1111
Q ss_pred ----------cCChH-------------H--------------HHHHHHHHHHcCCC-eeEEEe-----eeeEEEEEEec
Q 003466 712 ----------VGDSK-------------L--------------WDLELIQQISSHRT-VQRVVA-----LGTLCAIELQA 748 (818)
Q Consensus 712 ----------~~~~~-------------~--------------~~~~l~~~l~~~~~-v~~vrg-----~Gl~~~iel~~ 748 (818)
..... . +.+.+.+.++..+. +. ..+ ...++++.+..
T Consensus 222 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~i~~~~~~~ 300 (381)
T PRK02948 222 FPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIE-VEGHSTSCLPHIIGVTIKG 300 (381)
T ss_pred ccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEE-EeCCCccCcCCEEEEEeCC
Confidence 11110 0 01122333444432 21 111 01122222221
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
..+..+...|.++||.++.+ ++.+|+++...+|++|+|++++.|.++
T Consensus 301 ---------~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~ 371 (381)
T PRK02948 301 ---------IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETI 371 (381)
T ss_pred ---------CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11345666788999999841 258999999999999999999999988
Q ss_pred HHHH
Q 003466 805 LEEF 808 (818)
Q Consensus 805 l~~l 808 (818)
++++
T Consensus 372 ~~~~ 375 (381)
T PRK02948 372 GNQF 375 (381)
T ss_pred HHHH
Confidence 6543
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-09 Score=124.41 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=113.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (818)
+.+++.++. ..+++++|++..+ ++..|.+.| +++|.++|++||+++|+|++|+ +|..- +-.+.+|+.
T Consensus 159 ~~l~~~~~~-----~~~~t~lv~~~~v-~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~~--id~~~~gvD 225 (406)
T TIGR01814 159 EDILDTIEK-----NGDDIAVILLSGV-QYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNVP--LDLHDWGVD 225 (406)
T ss_pred HHHHHHHHh-----cCCCeEEEEEecc-ccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCcc--cccccCCCC
Confidence 345555542 2357889999998 888999987 9999999999999999999994 54442 223445554
Q ss_pred CcEEEecccccCCccccceeecchHHHhhccC-----------------------------ChH-------------HH-
Q 003466 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVG-----------------------------DSK-------------LW- 718 (818)
Q Consensus 682 PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~-----------------------------~~~-------------~~- 718 (818)
..+.+.-|.|.|| |-+++..+++..+.+.. +.. .+
T Consensus 226 ~~~~s~hK~l~g~--pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~ 303 (406)
T TIGR01814 226 FACWCTYKYLNAG--PGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFD 303 (406)
T ss_pred EEEEcCccccCCC--CCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHH
Confidence 4455778999877 33443443332211100 000 01
Q ss_pred --------------HHHHHHHHHcC----CCee-----EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe
Q 003466 719 --------------DLELIQQISSH----RTVQ-----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR 775 (818)
Q Consensus 719 --------------~~~l~~~l~~~----~~v~-----~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~ 775 (818)
.+.+.+.+++. +.+. +.+..+.++.+.+. . .+..+.+.|.++||++.
T Consensus 304 ~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~---------~~~~~~~~L~~~gi~v~ 373 (406)
T TIGR01814 304 QAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V---------PGKAVFQALIKRGVIGD 373 (406)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C---------CHHHHHHHHHHCCEEEe
Confidence 11222333332 1121 11223445666553 1 14567888999999987
Q ss_pred ecC-CEEEEEC-CCCChHHHHHHHHHHHHHHH
Q 003466 776 PLG-NVIYLMC-GPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 776 p~g-~~ir~~p-pl~~t~edId~~~~~l~~~l 805 (818)
..+ ..+|++| +...|++|||+++++|++++
T Consensus 374 ~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 374 KREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred ccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 644 6899999 78899999999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-09 Score=121.32 Aligned_cols=286 Identities=14% Similarity=0.086 Sum_probs=158.6
Q ss_pred CHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
+|.+.+|+....... +.........+...++.++|+++++.+ -+.++++++|++|+..++..+ +..... +
T Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~g~~~~~~~~~~~~-~~~~~~-~------ 103 (373)
T TIGR03812 33 HPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-DAYGYIVSGGTEANIQAVRAA-KNLARE-E------ 103 (373)
T ss_pred hHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEeccHHHHHHHHHHHH-HHHHhc-c------
Confidence 788888887765442 222111223455678889999988743 246788999999999998876 322110 0
Q ss_pred CCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
.....|+..+.+|.+ ...++...|... ..++.+..+
T Consensus 104 -------~~g~~vl~~~~~h~~-~~~~~~~~G~~~----------------------------~~v~~~~~~-------- 139 (373)
T TIGR03812 104 -------KRTPNIIVPESAHFS-FEKAAEMLGLEL----------------------------RYAPLDEDY-------- 139 (373)
T ss_pred -------CCCcEEEECCcchHH-HHHHHHHcCCeE----------------------------EEEeeCCCC--------
Confidence 001256665554443 222222222110 001111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+.+ ...+.+++.|. ...|.+.+ +++|.++|+++|++
T Consensus 140 ---~~d------------------~~~l~~~l~~-------~~~~vv~~~~~--~~tG~~~~----~~~i~~l~~~~~~~ 185 (373)
T TIGR03812 140 ---TVD------------------VKDVEDLIDD-------NTIGIVGIAGT--TELGQIDD----IEELSKIALENGIY 185 (373)
T ss_pred ---CcC------------------HHHHHHHHhh-------CcEEEEEECCC--CCCCccCC----HHHHHHHHHHcCCe
Confidence 011 2556666642 23556777763 55677765 89999999999999
Q ss_pred EEEeecccCcccCC--ccc-hhcccCC---CCcEEEe--cccccCCccccceee-cchHHHhhccC------C-------
Q 003466 657 VIFDEVFTGFWRLG--VET-TADLLGC---VPDIACY--GKLLTGGVIPLAATL-ATNAVFDSFVG------D------- 714 (818)
Q Consensus 657 LI~DEV~TGfGRtG--~~~-a~e~~gv---~PDivtl--gKgLggGy~PlsAvl-~~~~i~~~l~~------~------- 714 (818)
+|+|++|.++ -.+ .++ ......+ ..|.+++ -|-+.++ .|.|+++ .++++.+.+.. .
T Consensus 186 livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (373)
T TIGR03812 186 LHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IPAGGILFRSKSYLKYLSVDAPYLTVKKQATIT 263 (373)
T ss_pred EEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCc-CCceEEEEeCHHHHhhhcccCcccCCCCCcceE
Confidence 9999999644 211 000 0001111 2355554 3733334 5777666 56776654310 0
Q ss_pred -hH-------------H---------------HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHH
Q 003466 715 -SK-------------L---------------WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLK 765 (818)
Q Consensus 715 -~~-------------~---------------~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~ 765 (818)
.+ . +.+.+.+.+++.+...-+.....++.+.+. + ...+.+
T Consensus 264 gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~-~----------~~~v~~ 332 (373)
T TIGR03812 264 GTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLNIVAFEVD-D----------PEEVRK 332 (373)
T ss_pred eechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCceEEEEEeC-C----------HHHHHH
Confidence 00 0 011233344444432111112223333221 1 236888
Q ss_pred HHHhCCceEeec--CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 766 KLREDGVYMRPL--GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 766 ~l~e~Gvlv~p~--g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
.|.++||+++.. ++.+|++++..+|++|+|+++++|++
T Consensus 333 ~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 333 KLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred HHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 999999999875 46899999999999999999999865
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=122.65 Aligned_cols=310 Identities=13% Similarity=0.046 Sum_probs=172.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
..+|+.+|... ++ . ++++.+++.+.++... .+....+..+....+++.+....+.+ ..+.+++++++++|+..+
T Consensus 32 ~~~~l~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~ 107 (393)
T PRK05764 32 DVISLGAGEPD--FD-T-PEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNA 107 (393)
T ss_pred CEEEeCCCCCC--CC-C-CHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHH
Confidence 56666665432 22 4 7899999988776422 11111223445556666665433311 125799999999999988
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
+.... +.| ..|+..+.+|.+.. .+....|.+.
T Consensus 108 ~~~~~-----~~g----------------d~vl~~~p~y~~~~-~~~~~~g~~~-------------------------- 139 (393)
T PRK05764 108 FMALL-----DPG----------------DEVIIPAPYWVSYP-EMVKLAGGVP-------------------------- 139 (393)
T ss_pred HHHhc-----CCC----------------CEEEecCCCCcchH-HHHHHcCCEE--------------------------
Confidence 88651 112 25777666665432 2222222110
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCcc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMH 636 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~~g~gG~~ 636 (818)
+.+|... +..|. -| .+.+++.+. .++.+ ++..| ++..|.+
T Consensus 140 ----~~~~~~~---------------~~~~~--~d--------~~~l~~~l~--------~~~~~v~~~~p--~NPtG~~ 180 (393)
T PRK05764 140 ----VFVPTGE---------------ENGFK--LT--------VEQLEAAIT--------PKTKALILNSP--SNPTGAV 180 (393)
T ss_pred ----EEEecCc---------------ccCCc--CC--------HHHHHHhhC--------ccceEEEEECC--CCCCCcc
Confidence 0011000 00000 00 144555553 13344 44445 5667776
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcc--cCCC-CcEE--Eeccccc-CCccccceeecchHHHh
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL--LGCV-PDIA--CYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~--~gv~-PDiv--tlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
. +.+.+++|.++|++||+++|+||++..|.-.|..+ .... .+.. .+++ ++||.+| .| +.+|++++++++++
T Consensus 181 ~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~i~~~~~~~~ 258 (393)
T PRK05764 181 Y-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTG-WRLGYAAGPKELIK 258 (393)
T ss_pred c-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCcc-ceeEEEecCHHHHH
Confidence 5 67899999999999999999999997653223211 1111 1222 2233 5999998 77 68999999998877
Q ss_pred hccCCh--------H--------HHH-----------------HHHHHHHHcCCCeeEEEeee-eEEEEEEecCcccCCC
Q 003466 710 SFVGDS--------K--------LWD-----------------LELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~--------~--------~~~-----------------~~l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~~~~~ 755 (818)
.+.... . .+. +.+.+.+++++.+.-....| .++-+.+.......
T Consensus 259 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~~~-- 336 (393)
T PRK05764 259 AMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKS-- 336 (393)
T ss_pred HHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccccc--
Confidence 553210 0 110 11234455554433333444 33334443211000
Q ss_pred chHHHHHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 756 ~~~~a~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
...+.+++..|+ ++||.+.++ .+.+|++.. ++++++++++++|.+++++
T Consensus 337 -~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~--~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 337 -ITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYA--TSLEDLEEGLERIERFLES 391 (393)
T ss_pred -cCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 001356777776 579999873 267888754 5799999999999988764
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=118.47 Aligned_cols=296 Identities=16% Similarity=0.124 Sum_probs=164.7
Q ss_pred eecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHH
Q 003466 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (818)
Q Consensus 402 lD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA 481 (818)
+||.|..|+ | . +|++.+|+.++-.... .. -+..+...+++++++++++. ..++|+.||+.||..||...
T Consensus 2 ~~f~SDn~~---g-~-~~~m~eam~~a~~~~~-~~--YG~D~~~~~~e~~~ae~~g~---~a~~Fv~sGT~aN~lal~~~ 70 (342)
T COG2008 2 IDFRSDNVA---G-P-TPEMREALAAANAVGD-DV--YGEDPTTNALEQRIAELFGK---EAALFVPSGTQANQLALAAH 70 (342)
T ss_pred CccccCccC---C-C-CHHHHHHHHhccccCC-CC--CCCCHHHHHHHHHHHHHhCC---ceEEEecCccHHHHHHHHHh
Confidence 456553332 2 4 8999999998664211 11 13467788999999999984 79999999999999999976
Q ss_pred HHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCccee
Q 003466 482 FRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561 (818)
Q Consensus 482 ~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~ 561 (818)
. ++| ..+.....-|=.+..+- +...+... ..
T Consensus 71 ~-----~~~-----------------~~vi~~~~aHi~~~E~G---a~~~~~~~------------------------~~ 101 (342)
T COG2008 71 C-----QPG-----------------ESVICHETAHIYTDECG---APEFFGGG------------------------QK 101 (342)
T ss_pred c-----CCC-----------------CeEEEeccccceecccC---cHHHHcCC------------------------ce
Confidence 1 222 22333333343222211 11111000 00
Q ss_pred ecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHH
Q 003466 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL 641 (818)
Q Consensus 562 v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~ 641 (818)
++.+.. .+- .-+ .+.++..+..- +.+......++.|.- ..++|.+. |.+
T Consensus 102 ~~~~~g--------~~G-klt------------------~e~v~~~i~~~--d~~~~~~~~~~~e~~-~te~GtVy-~l~ 150 (342)
T COG2008 102 LPIVPG--------ADG-KLT------------------PEDVEAAIRPD--DIHHAPTPLAVLENT-ATEGGTVY-PLD 150 (342)
T ss_pred eccCCC--------CCC-CcC------------------HHHHHHhhcCC--CcccCCCceEEEeec-cCCCceec-CHH
Confidence 000000 000 001 24566656531 123445667777775 66777665 899
Q ss_pred HHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-------CCcEE--EecccccCCccccceee-cchHHHhhc
Q 003466 642 FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-------VPDIA--CYGKLLTGGVIPLAATL-ATNAVFDSF 711 (818)
Q Consensus 642 fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-------~PDiv--tlgKgLggGy~PlsAvl-~~~~i~~~l 711 (818)
.++.+.++|++||+.|.+| |- |... +.-.+|+ --|.+ |++|+++ .|.++++ ++.+.+..+
T Consensus 151 el~~i~~~~k~~~l~LHmD----GA-R~~n--A~valg~~~~~~~~~~D~v~~~~tK~g~---~~~gAiv~gn~~~~~~a 220 (342)
T COG2008 151 ELEAISAVCKEHGLPLHMD----GA-RLAN--ALVALGVALKTIKSYVDSVSFCLTKGGG---APVGAIVFGNRDFAKRA 220 (342)
T ss_pred HHHHHHHHHHHhCCceeec----hH-HHHH--HHHHcCCCHHHHHhhCCEEEEecccCCc---ceeeeEEEcCHHHHHHH
Confidence 9999999999999999999 43 3322 1112221 23555 5556544 4677766 566666544
Q ss_pred cCChH------------------HHHH---------------HHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCch
Q 003466 712 VGDSK------------------LWDL---------------ELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 712 ~~~~~------------------~~~~---------------~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~ 757 (818)
...-+ ++++ .|.+.+...+.+.-.. ..--++-+.+... .
T Consensus 221 ~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~-------~ 293 (342)
T COG2008 221 RRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPES-------A 293 (342)
T ss_pred HHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChH-------H
Confidence 21100 1111 1222222222211110 1111222222211 1
Q ss_pred HHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 758 ~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
..+......+++.|++..+.+..+||..+..+|++||++++..+++.+
T Consensus 294 i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 294 IEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred HHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 234455667778888887766789999999999999999999887653
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-09 Score=118.84 Aligned_cols=169 Identities=10% Similarity=0.038 Sum_probs=109.2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCcc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVI 696 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~ 696 (818)
++.+|++.-+ +...|...+ +++|.++|++||+++|+|++|. +|..- .... ...+|+++ +.|.+|. .
T Consensus 159 ~~~lv~~~~~-~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~~--~~~~--~~~~d~~~~s~~K~~gp--~ 226 (403)
T TIGR01979 159 KTKLVAITHV-SNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHMP--VDVQ--ALDCDFYVFSGHKMYGP--T 226 (403)
T ss_pred CCeEEEEEcc-cccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCccc--cCcc--ccCCCEEEEecccccCC--C
Confidence 4567777765 777888886 8999999999999999999994 43211 1112 23478875 5597642 1
Q ss_pred ccceeecchHHHhhccC---------------------------ChH-------------HHH---------------HH
Q 003466 697 PLAATLATNAVFDSFVG---------------------------DSK-------------LWD---------------LE 721 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~---------------------------~~~-------------~~~---------------~~ 721 (818)
-+|++.+++++.+.+.. +.. .+. +.
T Consensus 227 G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~ 306 (403)
T TIGR01979 227 GIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAY 306 (403)
T ss_pred CceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 26778888887664320 000 010 11
Q ss_pred HHHHHHcCCCeeEEE-----eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEE
Q 003466 722 LIQQISSHRTVQRVV-----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYL 783 (818)
Q Consensus 722 l~~~l~~~~~v~~vr-----g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~ 783 (818)
+.+.++..+.+.-+. ..+.++.+.+... ....+.+.|.++||.++++ +..+|+
T Consensus 307 l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRi 377 (403)
T TIGR01979 307 ALERLGEIPGLRIYGPRDAEDRGGIISFNVEGV---------HPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRA 377 (403)
T ss_pred HHHHHhcCCCEEEeCCCCccccCceEEEEeCCc---------CHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEE
Confidence 223344444332111 1255666665322 1345778888999999752 357999
Q ss_pred ECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 784 MCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 784 ~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+++...|++|+++++++|+++++.+
T Consensus 378 S~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 378 SFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred EeccCCCHHHHHHHHHHHHHHHHHh
Confidence 9999899999999999999887664
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-09 Score=121.52 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=148.6
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (818)
.+...+++++|+++++. +.+++++||++|++.+++.+ +. .. ..+||+...+||+...
T Consensus 17 ~~~~~~~~~~la~~~~~---~~~~~~~sgt~al~~~l~~l-~~---~~----------------gd~vl~~~~~~~~~~~ 73 (352)
T cd00616 17 GPKVREFEKAFAEYLGV---KYAVAVSSGTAALHLALRAL-GI---GP----------------GDEVIVPSFTFVATAN 73 (352)
T ss_pred CHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-CC---CC----------------CCEEEeCCcchHHHHH
Confidence 56788999999999973 57889999999999999876 11 11 2368888888886432
Q ss_pred ccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 522 ~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
++...|... ..++.+. .+ ..|
T Consensus 74 -~~~~~g~~~----------------------------~~~~~~~~~~-----------~~d------------------ 95 (352)
T cd00616 74 -AILLLGATP----------------------------VFVDIDPDTY-----------NID------------------ 95 (352)
T ss_pred -HHHHcCCeE----------------------------EEEecCCCcC-----------CcC------------------
Confidence 222111110 0011100 00 011
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
.+.+++.+. .++++|++..+ .|...+ +++|+++|++||+++|+|++|+ +|.. +.....|.
T Consensus 96 ~~~l~~~i~--------~~~~~v~~~~~----~G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~---~~~~~~~~ 155 (352)
T cd00616 96 PELIEAAIT--------PRTKAIIPVHL----YGNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGAT---YKGRKVGT 155 (352)
T ss_pred HHHHHHhcC--------cCCeEEEEECC----CCCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCe---ECCEEccc
Confidence 144555553 34677776654 344443 8999999999999999999995 4332 11122344
Q ss_pred CCcEEEec----ccccCCccccceeecc-hHHHhhccC--------------------ChH--------------H----
Q 003466 681 VPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG--------------------DSK--------------L---- 717 (818)
Q Consensus 681 ~PDivtlg----KgLggGy~PlsAvl~~-~~i~~~l~~--------------------~~~--------------~---- 717 (818)
..|+.++| |.+++| +.|+++++ +++.+.+.. ... .
T Consensus 156 ~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~ 233 (352)
T cd00616 156 FGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEI 233 (352)
T ss_pred CcceeEEcCCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHH
Confidence 46888877 999655 45667665 455442210 000 0
Q ss_pred ------HHHHHHHHHHcCCCeeEE------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee----c----
Q 003466 718 ------WDLELIQQISSHRTVQRV------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L---- 777 (818)
Q Consensus 718 ------~~~~l~~~l~~~~~v~~v------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~---- 777 (818)
..+.+.+.|+..+.+.-+ .....++.+.+... .......+.+.|.++||.++. .
T Consensus 234 ~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~ 307 (352)
T cd00616 234 IARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE------AGESRDELIEALKEAGIETRVHYPPLHHQP 307 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc------CCCCHHHHHHHHHHCCCCeeeecCccccCH
Confidence 001223344444432211 12334555555321 002355788899999997762 0
Q ss_pred --------------------CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 778 --------------------GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 778 --------------------g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
...+|+.+....|++||++++++|+
T Consensus 308 ~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 308 PYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred hhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 1467887788899999999998873
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.4e-09 Score=119.49 Aligned_cols=207 Identities=12% Similarity=0.047 Sum_probs=123.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCC-------ChhHHHHHHHHHhccCCCCCCcEEEeCChhH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~~~~~l~~v~f~~SGse 472 (818)
-|||..+ .+-- ++.|.+|+.+.++...... .... .+...++.++|+++++.+ .+.++|+++|++
T Consensus 5 ~yld~aa------~~~~-~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~ 75 (402)
T TIGR02006 5 IYLDYAA------TTPV-DPRVAEKMMPYLTEKFGNP-ASRSHSFGWEAEEAVENARNQVAELIGAD-SREIVFTSGATE 75 (402)
T ss_pred EEeeCCc------CCCC-CHHHHHHHHHHHHhcCCCC-ChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHH
Confidence 6888765 3445 8999999988775432111 1111 134556677888888743 357999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
|+..+++.+ ..+....| ..||+. ...|.+...+....... |.
T Consensus 76 a~~~~l~~l-~~~~~~~g----------------~~Vi~~-~~~h~s~~~~~~~~~~~--------------g~------ 117 (402)
T TIGR02006 76 SNNLAIKGI-AHFYKSKG----------------NHIITS-KTEHKAVLDTCRYLERE--------------GF------ 117 (402)
T ss_pred HHHHHHHHH-HHhhcCCC----------------CEEEEC-CCccHHHHHHHHHHHhc--------------CC------
Confidence 999999876 32211111 244444 45566544332211000 00
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
....++..... ..| .+.+++.+. +++.+|++..+ ++.
T Consensus 118 -----~v~~v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~v~~~-~n~ 154 (402)
T TIGR02006 118 -----EVTYLPPKSNG-----------LID------------------LEELKAAIR--------DDTILVSIMHV-NNE 154 (402)
T ss_pred -----EEEEEccCCCC-----------cCC------------------HHHHHHhcC--------CCCEEEEEECC-CcC
Confidence 00011111000 001 145555553 24578888886 888
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHH
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i 707 (818)
.|.+.+ +++|.++|++||+++|+|++|+ +|... .+..+..+|+++++ |.+|. ..+|+++++++.
T Consensus 155 tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~----~~~~~~~~D~~~~s~~K~~gp--~G~G~l~~~~~~ 220 (402)
T TIGR02006 155 IGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP----INVNELKVDLMSISGHKIYGP--KGIGALYVRRKP 220 (402)
T ss_pred ceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCccccCCCEEEEehhhhcCC--CceEEEEEccCC
Confidence 898886 8999999999999999999994 54331 12224568999999 96542 237777777643
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-10 Score=126.64 Aligned_cols=171 Identities=13% Similarity=0.058 Sum_probs=111.8
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.+++++||++|+..+++... ..| ..|++....||+.
T Consensus 37 ~~~p~~~~le~~la~l~g~---~~a~~~~sG~~Ai~~~l~~l~-----~~g----------------d~Vl~~~~~y~~~ 92 (369)
T cd00614 37 IGNPTVDALEKKLAALEGG---EAALAFSSGMAAISTVLLALL-----KAG----------------DHVVASDDLYGGT 92 (369)
T ss_pred CCChhHHHHHHHHHHHHCC---CCEEEEcCHHHHHHHHHHHHc-----CCC----------------CEEEECCCCcchH
Confidence 4578899999999999873 678888999999999998761 122 2577777777663
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. ..+.... . . .|.. ...++ ++|
T Consensus 93 ~-~~~~~~~-~--~----------~g~~-------------~~~v~--------------~~d----------------- 114 (369)
T cd00614 93 Y-RLFERLL-P--K----------LGIE-------------VTFVD--------------PDD----------------- 114 (369)
T ss_pred H-HHHHHHH-h--h----------cCeE-------------EEEeC--------------CCC-----------------
Confidence 2 2111000 0 0 0000 00000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. .++.+|++|.+ ++..|.+.+ +++|.++|++||+++|+||++. .+... ....
T Consensus 115 -~~~l~~~i~--------~~~~~v~~e~~-~np~g~~~d----l~~i~~la~~~g~~livD~t~~-~~~~~-----~~~~ 174 (369)
T cd00614 115 -PEALEAAIK--------PETKLVYVESP-TNPTLKVVD----IEAIAELAHEHGALLVVDNTFA-TPYLQ-----RPLE 174 (369)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-chhcC-----Chhh
Confidence 144555553 25779999997 888888776 8999999999999999999984 32221 1123
Q ss_pred CCCcEE--EecccccC-Cccccceeecch-HHHhhcc
Q 003466 680 CVPDIA--CYGKLLTG-GVIPLAATLATN-AVFDSFV 712 (818)
Q Consensus 680 v~PDiv--tlgKgLgg-Gy~PlsAvl~~~-~i~~~l~ 712 (818)
..+|++ +++|.++| |-...|++++++ ++++.+.
T Consensus 175 ~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~ 211 (369)
T cd00614 175 LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLR 211 (369)
T ss_pred hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHH
Confidence 346877 78999986 324678888877 7766554
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-09 Score=118.59 Aligned_cols=288 Identities=11% Similarity=0.034 Sum_probs=167.6
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
.|+|..+ .|.- ++.+.+|+.+.+..........+ ..+...++.+.++++++.. .+.++|++++++++
T Consensus 19 ~yl~~~~------~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~-~~~v~~~~~~t~~l 90 (397)
T TIGR01976 19 VFFDNPA------GTQI-PQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD-PPEVVFGANATSLT 90 (397)
T ss_pred EEecCCc------cCCC-CHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCCHHHHH
Confidence 6777554 4555 88999999998875432110011 1244678889999988743 24699999999988
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc----cccCCCCCCCcCCCCcccCCCcccCC
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----EAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al----s~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
..++... ... ..+| .+|+..+..|++. .... ...|...
T Consensus 91 ~~~~~~~-~~~-~~~g----------------d~vl~~~~~~~s~-~~~~~~~~~~~g~~~------------------- 132 (397)
T TIGR01976 91 FLLSRAI-SRR-WGPG----------------DEVIVTRLDHEAN-ISPWLQAAERAGAKV------------------- 132 (397)
T ss_pred HHHHHHH-Hhc-CCCC----------------CEEEEcCCchHhH-HHHHHHHHHhcCCEE-------------------
Confidence 7666544 111 1111 2566666555442 2111 1111110
Q ss_pred CcccccCcceeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003466 551 PTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~ 629 (818)
..++.+. .+ ..| .+.+++.+. +++.+|+++-+
T Consensus 133 ---------~~~~~~~~~~-----------~~~------------------~~~l~~~i~--------~~~~lv~i~~~- 165 (397)
T TIGR01976 133 ---------KWARVDEATG-----------ELH------------------PDDLASLLS--------PRTRLVAVTAA- 165 (397)
T ss_pred ---------EEEeccccCC-----------CcC------------------HHHHHHhcC--------CCceEEEEeCC-
Confidence 0011100 00 001 245665553 24567777765
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i 707 (818)
.+..|.+.+ +++|.++|++||+++|+||+|. +| .+. ..... ..+|++ ++.|.+| .++|.+++++++
T Consensus 166 ~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~-~~~-~~~~~--~~~d~~~~s~~K~~g---~~~G~l~~~~~~ 233 (397)
T TIGR01976 166 SNTLGSIVD----LAAITELVHAAGALVVVDAVHY-AP-HGL-IDVQA--TGADFLTCSAYKFFG---PHMGILWGRPEL 233 (397)
T ss_pred CCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cc-ccC-CCHHH--cCCCEEEEechhhcC---CceEEEEEcHHH
Confidence 777888876 9999999999999999999994 32 111 11122 246876 6789874 357888899988
Q ss_pred HhhccCCh----------------H-------------HHH-----------------------------HHHHHHHHcC
Q 003466 708 FDSFVGDS----------------K-------------LWD-----------------------------LELIQQISSH 729 (818)
Q Consensus 708 ~~~l~~~~----------------~-------------~~~-----------------------------~~l~~~l~~~ 729 (818)
++.+.... . .+. +.+.+.+++.
T Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 313 (397)
T TIGR01976 234 LMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDL 313 (397)
T ss_pred HhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 76543210 0 010 0111223333
Q ss_pred CCeeEEE-----eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec----------------CCEEEEECCCC
Q 003466 730 RTVQRVV-----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------------GNVIYLMCGPC 788 (818)
Q Consensus 730 ~~v~~vr-----g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----------------g~~ir~~ppl~ 788 (818)
+.+.-+. ..+.++.+.+.. ..+..+.++|.++||+++.+ +..+|+++...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 384 (397)
T TIGR01976 314 PGVTLYGVARLAARVPTVSFTVHG---------LPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHY 384 (397)
T ss_pred CCEEEeCCCCccCCCceEEEEeCC---------cCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeecc
Confidence 3221111 122344443321 12456888999999999853 35799999999
Q ss_pred ChHHHHHHHHHHH
Q 003466 789 SSPEVCSQLLLKL 801 (818)
Q Consensus 789 ~t~edId~~~~~l 801 (818)
+|++|+++++++|
T Consensus 385 ~t~~di~~l~~~l 397 (397)
T TIGR01976 385 NTAEEVDRLLEAL 397 (397)
T ss_pred CCHHHHHHHHHhC
Confidence 9999999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.7e-09 Score=116.59 Aligned_cols=301 Identities=14% Similarity=0.111 Sum_probs=161.7
Q ss_pred ceeecccccccccCCCC-CCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDAT-LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~-~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~AL 478 (818)
.+|++++-. .++|-+ ..+++++|+++.++.+. ...+...+++++++++++. +.++++++|++|+..|+
T Consensus 9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~~------~~~~~~~~~~~~~a~~~g~---~~~~~~~g~t~al~~al 77 (363)
T TIGR01437 9 KVINASGKM--TILGVSTVSDEVADAQKRGAQNYF------EIKELVNKTGEYIANLLGV---EDAVIVSSASAGIAQSV 77 (363)
T ss_pred eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhCC---CeEEEEcCHHHHHHHHH
Confidence 455555443 345522 17889999999876542 2356788999999999874 58899999999999999
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC--c-cccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD--T-LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~--t-~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
+.+. ..|+-.=. ..-+...-....||.....|.-. + ..++.++|.
T Consensus 78 ~al~-----~~Gd~~~~-~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~-------------------------- 125 (363)
T TIGR01437 78 AAVI-----TRGNRYLV-ENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGG-------------------------- 125 (363)
T ss_pred HHHh-----cCCCcchh-hcccccccccceEEEECccchhcCCchHHHHHhcCC--------------------------
Confidence 9762 12210000 00000000011333333222110 0 001111110
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCC
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGG 634 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI-vEPV~~g~gG 634 (818)
..+.++..+ ..| .+.+++.|. ++..+++ +..- .+..|
T Consensus 126 ----~~v~v~~~~-----------~~d------------------~~~le~ai~--------~~t~ai~~v~~~-~~~~g 163 (363)
T TIGR01437 126 ----KVVEAGYAN-----------ECS------------------AEQLEAAIT--------EKTAAILYIKSH-HCVQK 163 (363)
T ss_pred ----eEEEEcCCC-----------CCC------------------HHHHHHhcC--------hhceEEEEEecC-CCCcC
Confidence 000000000 001 256677664 2333444 4432 23345
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhcc
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~ 712 (818)
.+.+ +++|.++|++||+++|+|++|. . .. .....+| .|++++| |.|+|. ..|++++++++++.+.
T Consensus 164 ~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~~--~~~~~~g--~D~~~~S~~K~l~gp--~~G~l~~~~~~i~~~~ 230 (363)
T TIGR01437 164 SMLS----VEDAAQVAQEHNLPLIVDAAAE-E--DL--QKYYRLG--ADLVIYSGAKAIEGP--TSGLVLGKKKYIEWVK 230 (363)
T ss_pred CcCC----HHHHHHHHHHcCCeEEEECCCC-C--ch--HHHHHcC--CCEEEEeCCcccCCC--ceEEEEEcHHHHHHHH
Confidence 5554 7899999999999999999995 2 11 1111234 4888655 988764 3777888877776531
Q ss_pred C---C-hH-----------------H--------H------HHHHHHHHHcCCCeeEEE--e-eee---EEEEEEecCcc
Q 003466 713 G---D-SK-----------------L--------W------DLELIQQISSHRTVQRVV--A-LGT---LCAIELQAAGC 751 (818)
Q Consensus 713 ~---~-~~-----------------~--------~------~~~l~~~l~~~~~v~~vr--g-~Gl---~~~iel~~~~~ 751 (818)
. . .. . + .+.+.+.|++.+.+.-.. . .+. ...+.+....
T Consensus 231 ~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~- 309 (363)
T TIGR01437 231 LQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESE- 309 (363)
T ss_pred hccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC-
Confidence 1 1 00 0 0 012344455555432221 1 111 1223333210
Q ss_pred cCCCchHHHHHHHHHHHhCC--ceEee---cCCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 752 NAGYGSLYAASLLKKLREDG--VYMRP---LGNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 752 ~~~~~~~~a~~~~~~l~e~G--vlv~p---~g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
. .....++.+.|.++| |++++ ..+.+++.|.. .+++|++.++++|.+.
T Consensus 310 -~---g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 310 -L---GMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTGGQLDIIVERIREI 362 (363)
T ss_pred -C---CCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCHHHHHHHHHHHHHh
Confidence 0 012567888898877 78875 23688888885 6699999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=121.68 Aligned_cols=177 Identities=20% Similarity=0.186 Sum_probs=112.3
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcccCCCCcEEEeccccc-CCcc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYGKLLT-GGVI 696 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDivtlgKgLg-gGy~ 696 (818)
++.+|++... ++..|.+. +++.+++|.++|++||+++|+||++.++...++... .+.++-.--+.+|||.+| .| +
T Consensus 153 ~~kli~i~~p-~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G-~ 229 (373)
T PRK07324 153 NTKLICINNA-NNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPG-I 229 (373)
T ss_pred CCcEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCcc-c
Confidence 3456666543 67777666 789999999999999999999999988754443211 111111112348999998 67 7
Q ss_pred ccceeecchHHHhhccCCh--------H--------H-------HH----------HHHHHHHHcCCCeeEEEeeeeEEE
Q 003466 697 PLAATLATNAVFDSFVGDS--------K--------L-------WD----------LELIQQISSHRTVQRVVALGTLCA 743 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~--------~--------~-------~~----------~~l~~~l~~~~~v~~vrg~Gl~~~ 743 (818)
.+|.+++++++++.+.... . . +. +.+.+.++.++.+..+...|.+..
T Consensus 230 RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~ 309 (373)
T PRK07324 230 RVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTS 309 (373)
T ss_pred eeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEE
Confidence 8999999988877553210 0 0 00 011222344555544555554332
Q ss_pred -EEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 744 -IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 744 -iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.+... .....++++|+ ++||++.|+ .+.+|+... .+++.+++.+++|.+.+++.
T Consensus 310 ~i~~~~~--------~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~--~~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 310 FVKLDVD--------MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYC--CDTETLKKGLKKLSEFLREF 371 (373)
T ss_pred EEEeCCC--------CCHHHHHHHHHHhcCEEEECccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence 333211 12456788875 779999984 257777754 56899999999999988653
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.3e-09 Score=117.15 Aligned_cols=279 Identities=15% Similarity=0.107 Sum_probs=158.2
Q ss_pred CHHHHHHHHHhhhhcc-cccCCCCC-----ChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAARFG-HVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~-~~~~~~~~-----~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
.+.+.+|+.+.++++. ......+. .+...++.+.|+++++....+.++|+++|++|+..++... . +.|
T Consensus 13 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~---~--~~g- 86 (376)
T TIGR01977 13 PDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGL---L--KEG- 86 (376)
T ss_pred CHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhc---c--CCC-
Confidence 5789999998887753 11111111 2556788889999887432247999999999998887643 1 111
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCcccccc-cc---CCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcch
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQ---APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als-~t---g~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~ 567 (818)
..|++...+ |++....+. +. |.. ...++....
T Consensus 87 ---------------d~vl~~~~~-~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~ 122 (376)
T TIGR01977 87 ---------------DHVITTPME-HNSVARPLECLKEQIGVE----------------------------ITIVKCDNE 122 (376)
T ss_pred ---------------CEEEECcch-hhHHHHHHHHHHHHcCcE----------------------------EEEEecCCC
Confidence 256655444 443322111 00 100 000110000
Q ss_pred hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHH
Q 003466 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (818)
Q Consensus 568 ~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~Lr 647 (818)
+ +.| .+.+++.+. .++++|++..+ ++..|.+.+ +++|.
T Consensus 123 ~-----------~~d------------------~~~l~~~~~--------~~~~~v~~~~~-~n~tG~~~~----~~~i~ 160 (376)
T TIGR01977 123 G-----------LIS------------------PERIKRAIK--------TNTKLIVVSHA-SNVTGTILP----IEEIG 160 (376)
T ss_pred C-----------CcC------------------HHHHHHhcC--------CCCeEEEEECC-CCCccccCC----HHHHH
Confidence 0 111 144555553 24567777765 788888886 88999
Q ss_pred HHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHH-HhhccC-----------
Q 003466 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV-FDSFVG----------- 713 (818)
Q Consensus 648 eLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i-~~~l~~----------- 713 (818)
++|+++|+++|+|++| ++|...- ..+. ..+|+++++ |.++|. -..|++..+++. +..+..
T Consensus 161 ~l~~~~~~~livD~a~-~~g~~~~--~~~~--~~~D~~~~s~~K~l~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 234 (376)
T TIGR01977 161 ELAQENGIFFILDAAQ-TAGVIPI--DMTE--LAIDMLAFTGHKGLLGP-QGTGGLYIREGIKLKPLKSGGTGSHSALID 234 (376)
T ss_pred HHHHHcCCEEEEEhhh-ccCccCC--Cchh--cCCCEEEecccccccCC-CCceEEEEcCCcCcCceecCCCcccccccc
Confidence 9999999999999999 5654421 1122 246887655 888753 124455554442 111110
Q ss_pred -----------ChH-------------HH---------------HHHHHHHHHcCCCeeEE-----EeeeeEEEEEEecC
Q 003466 714 -----------DSK-------------LW---------------DLELIQQISSHRTVQRV-----VALGTLCAIELQAA 749 (818)
Q Consensus 714 -----------~~~-------------~~---------------~~~l~~~l~~~~~v~~v-----rg~Gl~~~iel~~~ 749 (818)
+.. .+ .+.+.+.+.+.+.+.-+ ...+.++.+.+...
T Consensus 235 ~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 314 (376)
T TIGR01977 235 QPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI 314 (376)
T ss_pred ccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC
Confidence 000 00 01123334434432111 11244555555311
Q ss_pred cccCCCchHHHHHHHHHHHhC-CceEeec---------------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 750 GCNAGYGSLYAASLLKKLRED-GVYMRPL---------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 750 ~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~---------------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
....+.+.|.++ ||.++.+ ...+|+.+...+|++||++++++|++
T Consensus 315 ---------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 315 ---------DSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ---------CHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 245678888887 8888642 26899999999999999999999865
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=116.52 Aligned_cols=318 Identities=14% Similarity=0.097 Sum_probs=187.5
Q ss_pred cCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-CC-CcEEEeCC
Q 003466 394 KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDN 469 (818)
Q Consensus 394 G~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~l-~~v~f~~S 469 (818)
|.++.+..+|+..|.-+ .++ - +|.+.+++.+.+.+... +....+..+....+++.+.+..+.. .- +.++++++
T Consensus 34 ~~~~~~~~i~l~~g~~~-~~~-p-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~G 110 (405)
T PRK06207 34 GEPLPGRPVDFSHGDVD-AHE-P-TPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPG 110 (405)
T ss_pred CCcCCCCceecCCcCCC-CCC-C-CHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 44455577888765332 222 3 57889998887765321 1112344567778888888765531 12 57999999
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccC
Q 003466 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 470 GseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
+++|+..+++... ..| ..|++..-+|.+.... +...|...
T Consensus 111 a~~al~~~~~~l~-----~~G----------------d~Vlv~~P~y~~~~~~-~~~~g~~v------------------ 150 (405)
T PRK06207 111 TQGALFLAVAATV-----ARG----------------DKVAIVQPDYFANRKL-VEFFEGEM------------------ 150 (405)
T ss_pred cHHHHHHHHHHhc-----CCC----------------CEEEEeCCCchhHHHH-HHHcCCEE------------------
Confidence 9999998888651 222 3688888888764321 11212110
Q ss_pred CCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccc
Q 003466 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPV 628 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV 628 (818)
+++|-. +.+.+..+. -+ .+.|++.+.. ++.+ ++.-|
T Consensus 151 ------------~~v~~~------------~~~~~~~~~--~d--------~~~l~~~~~~--------~~k~v~l~~P- 187 (405)
T PRK06207 151 ------------VPVQLD------------YLSADKRAG--LD--------LDQLEEAFKA--------GVRVFLFSNP- 187 (405)
T ss_pred ------------EEEecc------------ccCcccCCC--cC--------HHHHHHhhhh--------cCeEEEECCC-
Confidence 011100 000000000 00 1455655541 2334 45556
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCc----EEEeccccc-CCccccceee
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD----IACYGKLLT-GGVIPLAATL 702 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD----ivtlgKgLg-gGy~PlsAvl 702 (818)
++-.|.+. +.+-+++|.++|++||+++|.||++.-|--.|..+ ....+...+| +.+|||.++ .| +-+|.++
T Consensus 188 -~NPTG~~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii 264 (405)
T PRK06207 188 -NNPAGVVY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG-YRLGVAF 264 (405)
T ss_pred -CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc-cceEEEE
Confidence 67778777 78899999999999999999999998763334321 1111222334 226899998 77 7999999
Q ss_pred cchHHHhhccCChH----------------HHH-----------------HHHHHHHHcCCCeeEEEe-eeeEEEEEEec
Q 003466 703 ATNAVFDSFVGDSK----------------LWD-----------------LELIQQISSHRTVQRVVA-LGTLCAIELQA 748 (818)
Q Consensus 703 ~~~~i~~~l~~~~~----------------~~~-----------------~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~ 748 (818)
+++++++.+..... .+. +.+.+.+++++.+.-... .|.++-+.+..
T Consensus 265 ~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~ 344 (405)
T PRK06207 265 GSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPR 344 (405)
T ss_pred cCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcc
Confidence 99988776532100 111 112233444433322223 35566566542
Q ss_pred CcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.. ..+..+++.|+ ++||.+.|+ .+.+|++... +++++++.+++|.+++++++
T Consensus 345 ~~-------~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~--~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 345 LA-------VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ--DHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred cC-------CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhh
Confidence 10 12456888887 689999973 2568887763 68999999999999887653
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-08 Score=116.58 Aligned_cols=299 Identities=10% Similarity=-0.021 Sum_probs=170.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC------CChhHHHHHHHHHhccCCCCCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA 473 (818)
-|||..+ .|.- .+.+.+|+.+.+.........+. ..+...++.++|+++++....+.++|+++++++
T Consensus 25 iYld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~ 97 (406)
T PRK09295 25 AYLDSAA------SAQK-PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEG 97 (406)
T ss_pred EEEeCcc------cccC-CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHH
Confidence 6888665 4445 78899999887765321110011 124455677788888764213689999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
+..+++.. ....-+.| ..||+.+..||+....-..+.. ..|.
T Consensus 98 l~~~~~~~-~~~~~~~g----------------d~vl~~~~~~~s~~~~~~~~~~--------------~~g~------- 139 (406)
T PRK09295 98 INLVANSW-GNSNVRAG----------------DNIIISEMEHHANIVPWQMLCA--------------RVGA------- 139 (406)
T ss_pred HHHHHHHh-hhhcCCCc----------------CEEEECcchhhHHHHHHHHHHH--------------HcCc-------
Confidence 98888753 11011111 3677777777663211111100 0000
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
....++.+... ..| .+.+++.+. .++.+|++.-+ +...
T Consensus 140 ----~v~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~lv~l~~~-~n~t 177 (406)
T PRK09295 140 ----ELRVIPLNPDG-----------TLQ------------------LETLPALFD--------ERTRLLAITHV-SNVL 177 (406)
T ss_pred ----EEEEEecCCCC-----------CCC------------------HHHHHHhcC--------CCcEEEEEecc-hhcc
Confidence 00011111000 001 145555553 24566666665 7888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhc
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l 711 (818)
|.+.+ +++|.++|+++|+++|+|++| ++|..- .-.+ ...+|++++| |.+|- .-+|.+.+++++.+.+
T Consensus 178 G~~~~----~~~i~~~~~~~~~~vivD~a~-~~g~~~--~~~~--~~~~D~~~~s~~K~~gp--~G~G~l~~~~~~~~~~ 246 (406)
T PRK09295 178 GTENP----LAEMIALAHQHGAKVLVDGAQ-AVMHHP--VDVQ--ALDCDFYVFSGHKLYGP--TGIGILYVKEALLQEM 246 (406)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEccc-ccCccc--cCch--hcCCCEEEeehhhccCC--CCcEEEEEchHhHhhC
Confidence 98886 899999999999999999999 454331 1112 2347898777 95541 1257788888775432
Q ss_pred c----------------------------CChH-------------HH---------------HHHHHHHHHcCCCeeEE
Q 003466 712 V----------------------------GDSK-------------LW---------------DLELIQQISSHRTVQRV 735 (818)
Q Consensus 712 ~----------------------------~~~~-------------~~---------------~~~l~~~l~~~~~v~~v 735 (818)
. .+.. .+ .+.+.+.+...+.+.-+
T Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~ 326 (406)
T PRK09295 247 PPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLY 326 (406)
T ss_pred CCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 1 0000 00 01123334444433211
Q ss_pred E--eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHHHHHHHH
Q 003466 736 V--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLK 800 (818)
Q Consensus 736 r--g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~~~ 800 (818)
. ..+.++.+.+... ....+.+.|.++||.++.+ ...+|+++....|++|||+++++
T Consensus 327 ~~~~~~~iv~~~~~~~---------~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~ 397 (406)
T PRK09295 327 GPQNRLGVIAFNLGKH---------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAG 397 (406)
T ss_pred CCCCCceEEEEEECCc---------CHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 0 1233555544321 1345677788999999742 14799999999999999999999
Q ss_pred HHHHH
Q 003466 801 LYQRL 805 (818)
Q Consensus 801 l~~~l 805 (818)
|++..
T Consensus 398 l~~i~ 402 (406)
T PRK09295 398 LQRIH 402 (406)
T ss_pred HHHHH
Confidence 98764
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-09 Score=122.41 Aligned_cols=180 Identities=11% Similarity=0.011 Sum_probs=102.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
+.+++.+.+ .. ...||+ |.+ .++- .+ +++|+++|++||++|++|++| ++|-.|..+....++
T Consensus 173 d~Le~~l~~-----~~--pklIv~~~S~-~s~~---~D----~a~i~~ia~~~ga~LlvD~AH-~~Gli~~~~~~~p~~- 235 (475)
T PLN03226 173 DKLEKKAML-----FR--PKLIIAGASA-YPRD---WD----YARMRKIADKVGALLMCDMAH-ISGLVAAQEAASPFE- 235 (475)
T ss_pred HHHHHHHhh-----cC--CeEEEEecCc-CCCc---cC----HHHHHHHHHHcCCEEEEEchh-hhCcccCCCCCCCCC-
Confidence 567777753 12 223444 776 4433 32 779999999999999999999 566666543222222
Q ss_pred CCcEE--EecccccCCccccceeecchHHH-----------hh--ccCC--------hH-------------H-------
Q 003466 681 VPDIA--CYGKLLTGGVIPLAATLATNAVF-----------DS--FVGD--------SK-------------L------- 717 (818)
Q Consensus 681 ~PDiv--tlgKgLggGy~PlsAvl~~~~i~-----------~~--l~~~--------~~-------------~------- 717 (818)
..|++ |+.|+|.|- +-|.+++++++. ++ ..+. +. .
T Consensus 236 ~~Div~~t~hK~L~GP--~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~ 313 (475)
T PLN03226 236 YCDVVTTTTHKSLRGP--RGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFK 313 (475)
T ss_pred CCeEEEecCcccccCC--CceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHH
Confidence 46876 677999652 123356666433 22 1111 10 0
Q ss_pred -HHH-------HHHHHHHcCCCeeEEEe--eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec----------
Q 003466 718 -WDL-------ELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------- 777 (818)
Q Consensus 718 -~~~-------~l~~~l~~~~~v~~vrg--~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---------- 777 (818)
+.+ .+.+.+.+.+. .-+.+ ...+..+++.... .....+.+.|.+.||++..+
T Consensus 314 ~~~~~~~~na~~L~~~L~~~G~-~l~~~~t~~hi~lv~~~~~g-------i~~~~~~~~L~~~~I~~nk~~~p~~~~~~~ 385 (475)
T PLN03226 314 AYQKQVKANAAALANRLMSKGY-KLVTGGTDNHLVLWDLRPLG-------LTGSRVEKVLDLAHITLNKNAVPGDSSALV 385 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-EEEcCCCCCCEEEEEccCCC-------CCHHHHHHHHHHCCCEECCCCCCCCcccCC
Confidence 111 12233333222 11111 1234444543221 12445677788899998642
Q ss_pred CCEEEE----ECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 778 GNVIYL----MCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 778 g~~ir~----~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
...+|+ .....++++|++++.+.|.++++..
T Consensus 386 ~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 386 PGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIA 420 (475)
T ss_pred CCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 245777 4556788999999999999999843
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-09 Score=117.21 Aligned_cols=285 Identities=14% Similarity=0.020 Sum_probs=151.3
Q ss_pred CChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 441 VYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..+...+++++++++++.+ .-..++|+++|++|+..|+..++..+..+... ....++...+|.....+|.+
T Consensus 36 ~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~h~~ 107 (345)
T cd06450 36 ATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKA--------GGGRGIDKLVIVCSDQAHVS 107 (345)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhc--------ccccccCCeEEEEcCcchhH
Confidence 3455666777777777642 12468999999999999999883222110000 00001123467777778876
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
...++...|.... .++..... ..|
T Consensus 108 ~~~~~~~~g~~~~----------------------------~v~~~~~~-----------~~d----------------- 131 (345)
T cd06450 108 VEKAAAYLDVKVR----------------------------LVPVDEDG-----------RMD----------------- 131 (345)
T ss_pred HHHHHHHHhcCeE----------------------------EeeeCCCC-----------CcC-----------------
Confidence 5444333222110 01100000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.|++.+.+.. ....+..+ ++..| ....|.+.+ +++|.++|++||+++++|+++.++.-..........
T Consensus 132 -~~~l~~~i~~~~--~~~~~~~~v~~~~~--~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~ 202 (345)
T cd06450 132 -PEALEAAIDEDK--AEGLNPIMVVATAG--TTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDF 202 (345)
T ss_pred -HHHHHHHHHHHH--HCCCCcEEEEEecc--cCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhc
Confidence 144555554200 11223344 44555 455677654 899999999999999999999654211111110011
Q ss_pred CC-CCcEE--EecccccCCccccceeecc----hHHHhhccCChH--------HHHHHHHHHHHcCCCeeEEE-eeeeEE
Q 003466 679 GC-VPDIA--CYGKLLTGGVIPLAATLAT----NAVFDSFVGDSK--------LWDLELIQQISSHRTVQRVV-ALGTLC 742 (818)
Q Consensus 679 gv-~PDiv--tlgKgLggGy~PlsAvl~~----~~i~~~l~~~~~--------~~~~~l~~~l~~~~~v~~vr-g~Gl~~ 742 (818)
++ ..|.+ ++.|.++++ ...|+++.+ ...++.+..... .+.+.+.+.+++.+.+.-+. ..+.++
T Consensus 203 ~~~~~d~~~~s~~K~l~~p-~g~g~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv 281 (345)
T cd06450 203 GIERVDSISVDPHKYGLVP-LGCSAVLVRALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLV 281 (345)
T ss_pred CccccCEEEEchhHhhCCC-cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEE
Confidence 11 35744 688988765 355555444 011111111110 22234455566665442221 234455
Q ss_pred EEEEecCcccCCCchHHHHHHHHHHHhCCceEee-----cCCEEEEECCCCC-hHHHHHHHHHHHHH
Q 003466 743 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-----LGNVIYLMCGPCS-SPEVCSQLLLKLYQ 803 (818)
Q Consensus 743 ~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-----~g~~ir~~ppl~~-t~edId~~~~~l~~ 803 (818)
.+.+.... -....+..+.++|.++|+++.+ .+..+|+.+...+ |++|+|++++.|++
T Consensus 282 ~f~~~~~~----~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 282 CFRLKPSV----KLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EEEECCcc----hhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 56554310 0012356788999999655443 1368999998765 99999999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=123.50 Aligned_cols=172 Identities=16% Similarity=0.115 Sum_probs=108.8
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|+++.+. +.+++++||++|+..+++... +.| .+||+. ..+||
T Consensus 50 r~~~p~~~~le~~la~l~g~---~~~~~~~sG~~Ai~~al~al~-----~~G----------------d~Vl~~-~~~~~ 104 (380)
T TIGR01325 50 RYANPTVAAFEERIAALEGA---ERAVATATGMSAIQAALMTLL-----QAG----------------DHVVAS-RSLFG 104 (380)
T ss_pred cCCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CCC----------------CEEEEe-cCCcc
Confidence 34577789999999998873 678899999999999997541 112 245554 55667
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.+...+.-. ....+. ...+++ .+|
T Consensus 105 ~t~~~~~~~-------------~~~~g~-----------~v~~v~----------------~~d---------------- 128 (380)
T TIGR01325 105 STVGFISEI-------------LPRFGI-----------EVSFVD----------------PTD---------------- 128 (380)
T ss_pred hHHHHHHHH-------------HHHhCC-----------EEEEEC----------------CCC----------------
Confidence 654322110 000000 000000 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.+. .++++|++|.. .+..|.+.+ +++|.++|+++|+++|+||+++.+ ... .-.
T Consensus 129 --~~~l~~~i~--------~~tklV~le~p-~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-~~~-----~pl 187 (380)
T TIGR01325 129 --LNAWEAAVK--------PNTKLVFVETP-SNPLGELVD----IAALAELAHAIGALLVVDNVFATP-VLQ-----QPL 187 (380)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccC-----Cch
Confidence 134555443 35689999986 777777665 899999999999999999998532 111 112
Q ss_pred CCCCcEEE--ecccccCCcccc-ceeecchHHHhhcc
Q 003466 679 GCVPDIAC--YGKLLTGGVIPL-AATLATNAVFDSFV 712 (818)
Q Consensus 679 gv~PDivt--lgKgLggGy~Pl-sAvl~~~~i~~~l~ 712 (818)
...+|+++ ++|.++|.-..+ |++++++++++.+.
T Consensus 188 ~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~ 224 (380)
T TIGR01325 188 KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVA 224 (380)
T ss_pred hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHH
Confidence 33478885 899998732344 67778888766554
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-08 Score=113.83 Aligned_cols=289 Identities=14% Similarity=0.074 Sum_probs=169.0
Q ss_pred CHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccc
Q 003466 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~ 495 (818)
.+.+.+++.+.+.... .+....+..+....+++.+....+.+ ..+.+++++++++|...++.+. ...|
T Consensus 47 ~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~-----~~~g----- 116 (387)
T PRK08960 47 AEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLL-----VDPG----- 116 (387)
T ss_pred CHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHh-----cCCC-----
Confidence 6889999988776421 11112234455666777766532211 1368999999999999888755 1222
Q ss_pred cCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
..|++.+-+|.+...... ..|.. ...+++...
T Consensus 117 -----------d~vlv~~p~y~~~~~~~~-~~g~~----------------------------~~~v~~~~~-------- 148 (387)
T PRK08960 117 -----------KHWLLADPGYPCNRHFLR-LVEGA----------------------------AQLVPVGPD-------- 148 (387)
T ss_pred -----------CEEEEcCCCCcchHHHHH-hcCCe----------------------------EEEEecCcc--------
Confidence 368888888876442221 11111 001111000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
++ |. .+ .+.+++.+. ......++..| ++-.|... +.+.+++|.++|++||+
T Consensus 149 -----~~----~~--~d--------~~~l~~~~~-------~~~~~i~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~ 199 (387)
T PRK08960 149 -----SR----YQ--LT--------PALVERHWN-------ADTVGALVASP--ANPTGTLL-SRDELAALSQALRARGG 199 (387)
T ss_pred -----cC----CC--CC--------HHHHHHHhC-------ccceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCC
Confidence 00 00 00 144555554 23445667777 67788777 78899999999999999
Q ss_pred cEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccccceeecchHHHhhccCC--------hH-------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD--------SK------- 716 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~PlsAvl~~~~i~~~l~~~--------~~------- 716 (818)
++|+||++..|--.+... ....+.++++ +|||.+| .| +.+|.+++++++++.+... +.
T Consensus 200 ~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~ 276 (387)
T PRK08960 200 HLVVDEIYHGLTYGVDAA--SVLEVDDDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAAL 276 (387)
T ss_pred EEEEEccccccccCCCCC--ChhhccCCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 999999998773222211 1233456665 5999997 67 7999999999887755321 00
Q ss_pred -HHH------------------HHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEe
Q 003466 717 -LWD------------------LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMR 775 (818)
Q Consensus 717 -~~~------------------~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~ 775 (818)
.+. +.+.+.++.++....+. .-|.++-+++.... .....+++.|+ ++||++.
T Consensus 277 ~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~-------~~~~~~~~~ll~~~gi~v~ 349 (387)
T PRK08960 277 ACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAFG-------GDAFAFCRHFLETEHVAFT 349 (387)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEeccccC-------CCHHHHHHHHHHhCCEEEc
Confidence 110 11223344454321122 23555555553210 11456777766 6899999
Q ss_pred ec--------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 776 PL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 776 p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
|+ ++.+|++... +.+++.+++++|.+++
T Consensus 350 pg~~f~~~~~~~~iRi~~~~--~~~~l~~al~~l~~~~ 385 (387)
T PRK08960 350 PGLDFGRHQAGQHVRFAYTQ--SLPRLQEAVERIARGL 385 (387)
T ss_pred CchHhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 73 2578888764 5677888887777655
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-08 Score=115.75 Aligned_cols=179 Identities=10% Similarity=0.040 Sum_probs=101.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
+.+++.+.. .+..+|++ .++ .|...+ +++|.++|++||+++|+||+|. +|.++........+
T Consensus 155 ~~l~~~i~~-------~~~k~v~~~~~~----~~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~~- 217 (416)
T PRK00011 155 DEVEKLALE-------HKPKLIIAGASA----YSRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP- 217 (416)
T ss_pred HHHHHHHHh-------cCCCEEEECCCc----CCCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCCC-
Confidence 556666752 13344555 454 233333 8999999999999999999984 44343211111122
Q ss_pred CCcEE--EecccccCCccccceeecc-hHHHhhccCCh---------H------------HHH--------------HHH
Q 003466 681 VPDIA--CYGKLLTGGVIPLAATLAT-NAVFDSFVGDS---------K------------LWD--------------LEL 722 (818)
Q Consensus 681 ~PDiv--tlgKgLggGy~PlsAvl~~-~~i~~~l~~~~---------~------------~~~--------------~~l 722 (818)
..|++ +++|+++| .+.|+++++ +++.+.+.... . .+. +.+
T Consensus 218 ~~di~~~S~~K~l~g--~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l 295 (416)
T PRK00011 218 HADVVTTTTHKTLRG--PRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKAL 295 (416)
T ss_pred CCcEEEecCCcCCCC--CCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35765 68999965 467778885 67766543110 0 000 112
Q ss_pred HHHHHcCCCeeEEE--eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee----c-------CCEEEEECC---
Q 003466 723 IQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L-------GNVIYLMCG--- 786 (818)
Q Consensus 723 ~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~-------g~~ir~~pp--- 786 (818)
.+.|+..+. .-.. ....++.+.+.+.. .....+.+.|.++||.++. . ...+|+...
T Consensus 296 ~~~L~~~g~-~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~ 367 (416)
T PRK00011 296 AEALAERGF-RVVSGGTDNHLVLVDLRSKG-------LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAIT 367 (416)
T ss_pred HHHHHhCCC-eeeecCCCCeEEEEeCcccC-------CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHh
Confidence 223333332 1111 11233334442210 1234577888899999972 1 245777432
Q ss_pred -CCChHHHHHHHHHHHHHHHHH
Q 003466 787 -PCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 787 -l~~t~edId~~~~~l~~~l~~ 807 (818)
..+|++|++++++.|++++..
T Consensus 368 ~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 368 TRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred hcCcCHHHHHHHHHHHHHHHhc
Confidence 257899999999999998776
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-08 Score=113.89 Aligned_cols=305 Identities=12% Similarity=0.078 Sum_probs=170.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCCC-C-CcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~-l-~~v~f~~SGseA~e~ 476 (818)
..+|+..|.-. .. . ++.+.+++.+.+... ..+....+..+....+++.+.+..+... . +.++++++|++|+..
T Consensus 25 ~~i~l~~g~p~--~~-~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~ 100 (387)
T PRK07777 25 GAVNLGQGFPD--ED-G-PPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAA 100 (387)
T ss_pred CeEEccCCCCC--CC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence 45666655422 11 2 567788877766532 1121122334555666666655444210 1 269999999999998
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
++... -..| ..|+....+|++.. .++...|...
T Consensus 101 ~~~~~-----~~~g----------------d~vli~~p~y~~~~-~~~~~~g~~~------------------------- 133 (387)
T PRK07777 101 AVLGL-----VEPG----------------DEVLLIEPYYDSYA-AVIAMAGAHR------------------------- 133 (387)
T ss_pred HHHHh-----cCCC----------------CEEEEeCCCchhhH-HHHHHCCCEE-------------------------
Confidence 88744 1112 36787777777643 2222222110
Q ss_pred CcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
+.+|..-. +-.| .| .+.+++.+. .++.+|++... ++..|.
T Consensus 134 -----~~~~~~~~-------~~~~~~d------------------~~~l~~~~~--------~~~~~v~l~~p-~NPtG~ 174 (387)
T PRK07777 134 -----VPVPLVPD-------GRGFALD------------------LDALRAAVT--------PRTRALIVNSP-HNPTGT 174 (387)
T ss_pred -----EEeecCCc-------cCCCcCC------------------HHHHHHhcC--------cccEEEEEcCC-CCCCCc
Confidence 00110000 0000 01 144555443 24567777764 788888
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhccc-CCC-Cc--EEEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCV-PD--IACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~-gv~-PD--ivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
.. +.+.+++|.++|++||+++|+||++.+|.-.+.. .....+ +.. .+ +.++||.+| .| +.+|++++++++++
T Consensus 175 ~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~ 252 (387)
T PRK07777 175 VL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTG-WKIGWACGPAPLIA 252 (387)
T ss_pred cC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcC-ceeEEEecCHHHHH
Confidence 66 7899999999999999999999999876322321 111111 211 12 337999998 67 79999999998876
Q ss_pred hccCCh--------H--------HH------H-----------HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCC
Q 003466 710 SFVGDS--------K--------LW------D-----------LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~--------~--------~~------~-----------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~ 755 (818)
.+.... . .+ . +.+.+.++.++. .-.... |.++-+.+....
T Consensus 253 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~~~~~~~----- 326 (387)
T PRK07777 253 AVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEAGF-EVHDSAGTYFLCADPRPLG----- 326 (387)
T ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCC-CccCCCcceEEEecccccC-----
Confidence 543210 0 00 0 112233333321 111122 333444543210
Q ss_pred chHHHHHHHHHHH-hCCceEeec----------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLR-EDGVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 756 ~~~~a~~~~~~l~-e~Gvlv~p~----------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
...+..+++.|+ ++||++.|+ .+.+|+... .+++++++.+++|.+..
T Consensus 327 -~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~--~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 327 -YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC--KRDDTLDEAIRRLRALR 384 (387)
T ss_pred -CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 012567888887 579999873 136788765 46899999999887654
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-08 Score=114.16 Aligned_cols=182 Identities=15% Similarity=0.101 Sum_probs=115.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc-CCcEEEeecccCcccCCccchhcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~-gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
+.+++.+.. ++.++++=|-.++-.|.+. +.+.+++|.++|++| ++++|.||++.-|...+..-... ..
T Consensus 202 ~~l~~~~~~--------~~k~i~~~p~p~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~--~~ 270 (431)
T PRK15481 202 EKLERALAQ--------GARAVILTPRAHNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIP--QT 270 (431)
T ss_pred HHHHHHHhc--------CCCEEEECCCCCCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCc--CC
Confidence 456666641 3445555443478888877 789999999999999 99999999997663222110010 11
Q ss_pred CCcE---EEecccccCCccccceeecchHHHhhccCC--------hH--------HHH-------------------HHH
Q 003466 681 VPDI---ACYGKLLTGGVIPLAATLATNAVFDSFVGD--------SK--------LWD-------------------LEL 722 (818)
Q Consensus 681 ~PDi---vtlgKgLggGy~PlsAvl~~~~i~~~l~~~--------~~--------~~~-------------------~~l 722 (818)
.+.+ -+|||.++.| +-+|.+++++++++.+... +. .+. +.+
T Consensus 271 ~~~vi~~~SfSK~~~~G-lRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~ 349 (431)
T PRK15481 271 TQRWALIRSVSKALGPD-LRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKL 349 (431)
T ss_pred CCCEEEEeeeccccCCC-ceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 2332 3899999988 7999999998887765321 00 010 012
Q ss_pred HHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--------CCEEEEECCCCChHHHH
Q 003466 723 IQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVC 794 (818)
Q Consensus 723 ~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edI 794 (818)
.+.++.++........|.++-+.+..+ ...+++.|.++||.+.|+ ++.+|++... .+++++
T Consensus 350 ~~~L~~~~~~~~~p~gg~f~~~~l~~~----------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i 418 (431)
T PRK15481 350 ARALQQYGIAIPSPGDGLNLWLPLDTD----------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEI 418 (431)
T ss_pred HHHHHHcCCccccCCCeEEEEEECCCC----------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHH
Confidence 233344432111123355555554321 346788888999999972 1468888754 568999
Q ss_pred HHHHHHHHHHHH
Q 003466 795 SQLLLKLYQRLE 806 (818)
Q Consensus 795 d~~~~~l~~~l~ 806 (818)
++++++|.+++.
T Consensus 419 ~~~~~~l~~~~~ 430 (431)
T PRK15481 419 NRLAADLHQALN 430 (431)
T ss_pred HHHHHHHHHHhc
Confidence 999999988763
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-08 Score=114.51 Aligned_cols=302 Identities=14% Similarity=0.059 Sum_probs=169.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ 476 (818)
.+||+.++... +...+.+.+++.+.+..... +....+..+....+++.+.+..+.. ..+.+++++++++|+..
T Consensus 30 ~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 105 (386)
T PRK07550 30 PLIDLSQAVPG----YPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWA 105 (386)
T ss_pred CeEEeCCCCCC----CCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence 67788775532 22257888888876643111 1111234555677777777653321 12578888888899888
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.. ...| .+|++-.-+|.+.. ..+...|..
T Consensus 106 ~~~~l-----~~~g----------------d~Vlv~~p~y~~~~-~~~~~~g~~-------------------------- 137 (386)
T PRK07550 106 AMVTL-----AGAG----------------DEVILPLPWYFNHK-MWLDMLGIR-------------------------- 137 (386)
T ss_pred HHHHh-----cCCC----------------CEEEEcCCCCcchH-HHHHhcCCE--------------------------
Confidence 87765 1222 25777766665432 111111111
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~~g~gG~ 635 (818)
.+.+|..- + +. + ..+ .+.+++.++. ++.+ +++-| ++..|.
T Consensus 138 ----~~~v~~~~--------~---~~----~--~~~--------~~~l~~~~~~--------~~~~v~~~~P--~NPtG~ 178 (386)
T PRK07550 138 ----PVYLPCDE--------G---PG----L--LPD--------PAAAEALITP--------RTRAIALVTP--NNPTGV 178 (386)
T ss_pred ----EEEEecCC--------C---cC----C--CCC--------HHHHHHHhcc--------cCcEEEEeCC--CCCCCc
Confidence 01111000 0 00 0 000 1456666641 3334 55555 566777
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc---hhcccCC---CCcEEEeccccc-CCccccceeecchHHH
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TADLLGC---VPDIACYGKLLT-GGVIPLAATLATNAVF 708 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~---a~e~~gv---~PDivtlgKgLg-gGy~PlsAvl~~~~i~ 708 (818)
.. +.+.+++|.++|++||+++|.||++..| +.+... .....+- ...+.+|||.+| .| +.+|+++++++++
T Consensus 179 ~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~ 255 (386)
T PRK07550 179 VY-PPELLHELYDLARRHGIALILDETYRDF-DSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTG-HRVGAVVASPARI 255 (386)
T ss_pred cc-CHHHHHHHHHHHHHcCeEEEEeccchhh-ccCCCCCcchhhCCCccccEEEEecchhhccCcc-cceEeeecCHHHH
Confidence 66 7899999999999999999999999776 322110 1111111 122448999998 67 6999999998887
Q ss_pred hhccCCh--------H--------HH--------------H---HHHHHHHHcCCCeeEEEeeeeE-EEEEEecCcccCC
Q 003466 709 DSFVGDS--------K--------LW--------------D---LELIQQISSHRTVQRVVALGTL-CAIELQAAGCNAG 754 (818)
Q Consensus 709 ~~l~~~~--------~--------~~--------------~---~~l~~~l~~~~~v~~vrg~Gl~-~~iel~~~~~~~~ 754 (818)
+.+.... . .+ . +.+.+.++.++.+ .+...|.+ +-+.+....
T Consensus 256 ~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~~~~~~~---- 330 (386)
T PRK07550 256 AEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGW-ELLASGAYFAYVRHPFPD---- 330 (386)
T ss_pred HHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-eeCCCceEEEEecCCCCC----
Confidence 6543210 0 00 0 1122334444332 23333433 333333211
Q ss_pred CchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 755 ~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
..+.+++..|. ++||.+.|+ ++.+|++... .+++++++++++|.+.
T Consensus 331 ---~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 331 ---RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred ---CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence 12556888765 689999873 2578888854 5689999999988753
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-08 Score=114.23 Aligned_cols=299 Identities=12% Similarity=0.057 Sum_probs=173.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCC-------ChhHHHHHHHHHhccCCCCCCcEEEeCChhH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~~~~~l~~v~f~~SGse 472 (818)
-|||..+ .|-- .+.|.+|+.+.+..+.... .... .+...++-+.|+++++...-+.|+|++++++
T Consensus 34 iyLd~a~------~~~~-p~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 105 (424)
T PLN02855 34 VYLDNAA------TSQK-PAAVLDALQDYYEEYNSNV-HRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE 105 (424)
T ss_pred EEeeCcc------ccCC-CHHHHHHHHHHHHhcCCCC-CCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence 6778643 4545 7889999988776543211 0111 1234566678888877531258999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc---cCCCCCCCcCCCCcccCCCcccC
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~---tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
|+..+++.. ....-+.| ..|++....|++....-..+ .|..
T Consensus 106 al~~i~~~~-~~~~~~~g----------------d~vl~~~~~~~s~~~~~~~~a~~~g~~------------------- 149 (424)
T PLN02855 106 AINLVAYTW-GLANLKPG----------------DEVILSVAEHHSNIVPWQLVAQKTGAV------------------- 149 (424)
T ss_pred HHHHHHHHh-hhhcCCCc----------------CEEEECCCccHHHHHHHHHHHHHcCCE-------------------
Confidence 998888743 10001111 35777666665432111111 1100
Q ss_pred CCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003466 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~ 629 (818)
...++..... ..| .+.+++.+. .++.+|++.-+
T Consensus 150 ---------v~~v~~~~~~-----------~~~------------------~~~l~~~i~--------~~t~lv~i~~~- 182 (424)
T PLN02855 150 ---------LKFVGLTPDE-----------VLD------------------VEQLKELLS--------EKTKLVATHHV- 182 (424)
T ss_pred ---------EEEEecCCCC-----------CcC------------------HHHHHHHhc--------cCceEEEEeCc-
Confidence 0011110000 001 145666553 24567777765
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i 707 (818)
+...|.+.+ +++|.++|+++|+++|+|++| ++|..- .-.+ ...+|++ .+.| +.|. --+|.+.+++++
T Consensus 183 ~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~-~~g~~~--~~~~--~~~~d~~~~s~~K-~~gp-~G~G~l~~~~~~ 251 (424)
T PLN02855 183 SNVLGSILP----VEDIVHWAHAVGAKVLVDACQ-SVPHMP--VDVQ--TLGADFLVASSHK-MCGP-TGIGFLWGKSDL 251 (424)
T ss_pred cccccccCC----HHHHHHHHHHcCCEEEEEhhh-hcCCcC--CCch--hcCCCEEEeeccc-ccCC-CccEEEEEchhh
Confidence 788888886 789999999999999999999 454321 1112 2346877 5789 4331 126778888877
Q ss_pred HhhccCC--------------------h-------H-------------H---------------HHHHHHHHHHcCCCe
Q 003466 708 FDSFVGD--------------------S-------K-------------L---------------WDLELIQQISSHRTV 732 (818)
Q Consensus 708 ~~~l~~~--------------------~-------~-------------~---------------~~~~l~~~l~~~~~v 732 (818)
.+.+... . . . +.+.+.+.+++.+.+
T Consensus 252 ~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~ 331 (424)
T PLN02855 252 LESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGV 331 (424)
T ss_pred hhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 6543210 0 0 0 011223344444433
Q ss_pred eEE-------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------------CCEEEEECCCCChH
Q 003466 733 QRV-------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------------GNVIYLMCGPCSSP 791 (818)
Q Consensus 733 ~~v-------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------------g~~ir~~ppl~~t~ 791 (818)
.-+ ...+.++.+.+... .+..+.+.|.++ ||.++.+ ...+|++++...|+
T Consensus 332 ~i~~~~~~~~~~r~~~v~~~~~~~---------~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~ 402 (424)
T PLN02855 332 RIYGPKPSEGVGRAALCAFNVEGI---------HPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTK 402 (424)
T ss_pred EEeCCCcccccCcccEEEEEECCc---------CHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCH
Confidence 211 01234555555321 144678888887 9998742 25799999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003466 792 EVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 792 edId~~~~~l~~~l~~l~ 809 (818)
+||++++++|+++++.+.
T Consensus 403 ~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 403 EEVDAFIHALKDTIAFFS 420 (424)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887754
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-08 Score=113.46 Aligned_cols=304 Identities=13% Similarity=0.088 Sum_probs=173.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCCC-CC-cEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW-AS-RAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~-l~-~v~f~~SGseA~e~ 476 (818)
..||+..|.. ++...+.+.+++.+.+++. ..+....+..+....+++.+.+..+... -+ .+++++++++|+..
T Consensus 55 ~~i~l~~G~P----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 130 (413)
T PLN00175 55 GAINLGQGFP----NFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAA 130 (413)
T ss_pred CeEecCCCCC----CCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHH
Confidence 4566655432 2232678899998887652 1122222344566777777766443210 13 58888888999888
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
++.... ..| ..|++.+-+|.+.. ..+...|...
T Consensus 131 ~~~~l~-----~~g----------------d~Vlv~~P~y~~~~-~~~~~~g~~~------------------------- 163 (413)
T PLN00175 131 TILGLI-----NPG----------------DEVILFAPFYDSYE-ATLSMAGAKI------------------------- 163 (413)
T ss_pred HHHHhC-----CCC----------------CEEEEeCCCchhHH-HHHHHcCCEE-------------------------
Confidence 877541 222 36788777775532 2222222110
Q ss_pred CcceeecCc-chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 557 NSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P-~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
..+++. +.+ -.| .+.+++.+. .++.+|++... ++..|.
T Consensus 164 ---~~v~~~~~~~-----------~~~------------------~~~l~~~~~--------~~~k~i~i~~p-~NPtG~ 202 (413)
T PLN00175 164 ---KTVTLRPPDF-----------AVP------------------EDELKAAFT--------SKTRAILINTP-HNPTGK 202 (413)
T ss_pred ---EEEECCcccC-----------CCC------------------HHHHHHhcC--------cCceEEEecCC-CCCCCc
Confidence 001110 000 000 144555553 24566676654 777887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcccCCCCc-E--EEeccccc-CCccccceeecchHHHhh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPD-I--ACYGKLLT-GGVIPLAATLATNAVFDS 710 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PD-i--vtlgKgLg-gGy~PlsAvl~~~~i~~~ 710 (818)
+. +.+.+++|.++|++||+++|.||++..|-..+.... .+..+..+. | -+|||.++ .| +.+|.+++++++++.
T Consensus 203 ~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G-~RiG~~v~~~~l~~~ 280 (413)
T PLN00175 203 MF-TREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWG 280 (413)
T ss_pred CC-CHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcc-hheeeeEeCHHHHHH
Confidence 66 799999999999999999999999976632232211 111122222 2 37999998 67 799999999988775
Q ss_pred ccCChH----------------HHH-----------------HHHHHHHHcCCCeeEEEeeee-EEEEEEecCcccCCCc
Q 003466 711 FVGDSK----------------LWD-----------------LELIQQISSHRTVQRVVALGT-LCAIELQAAGCNAGYG 756 (818)
Q Consensus 711 l~~~~~----------------~~~-----------------~~l~~~l~~~~~v~~vrg~Gl-~~~iel~~~~~~~~~~ 756 (818)
+..... .+. +.+.+.++.++ +.-....|. ++-+.+...+ .
T Consensus 281 l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~g~~f~~~~~~~~~----~- 354 (413)
T PLN00175 281 VRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEVG-FKVYPSSGTYFVMVDHTPFG----F- 354 (413)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEEeccccC----C-
Confidence 532110 110 11223344443 222223343 3444432110 0
Q ss_pred hHHHHHHHHHHH-hCCceEeec----------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 757 SLYAASLLKKLR-EDGVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 757 ~~~a~~~~~~l~-e~Gvlv~p~----------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.....+++.|+ ++||.+.|+ .+.+|++.. .+++++++.+++|.+.++
T Consensus 355 -~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 355 -ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLK 412 (413)
T ss_pred -CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence 11456788886 569999872 146888775 478999999999988764
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=114.52 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=99.9
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i 707 (818)
.+..|++.+ +++|.++|++||+++|+|.+| ++|... .....+ .+|++ ++.|.|+|+ .-+|.++++++.
T Consensus 139 ~~~tG~~~~----i~~I~~l~~~~g~~livD~~~-~~g~~~--~~~~~~--~~D~~~~s~~K~l~~p-~G~G~l~~~~~~ 208 (363)
T TIGR02326 139 ETTTGILNP----IEAVAKLAHRHGKVTIVDAMS-SFGGIP--IDIAEL--HIDYLISSANKCIQGV-PGFGFVIARQAE 208 (363)
T ss_pred cCCccccCc----HHHHHHHHHHcCCEEEEEccc-cccCcc--cchhhc--CccEEEecCccccccC-CcceEEEECHHH
Confidence 345678876 899999999999999999998 465432 222333 46766 688998764 235778898877
Q ss_pred HhhccC--------------------C----hH-------------HH-H---------------HHHHHHHHcCCC--e
Q 003466 708 FDSFVG--------------------D----SK-------------LW-D---------------LELIQQISSHRT--V 732 (818)
Q Consensus 708 ~~~l~~--------------------~----~~-------------~~-~---------------~~l~~~l~~~~~--v 732 (818)
++.+.. + .. .+ . +.+.+.+++++. +
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 288 (363)
T TIGR02326 209 LAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPL 288 (363)
T ss_pred HHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeec
Confidence 654311 0 00 00 0 012222333321 1
Q ss_pred eEE-EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 733 QRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 733 ~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
..- ...+.+..+.+.... ......+.+.|.++||.+++. .+.+|+.+...++.+|+++++++|++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 289 LDDEIQSPIITSFYSPEDP------DYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred cCcccCCceEEEEECCCCC------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 100 012233344433210 012456888999999999875 37899998777899999999999988763
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6e-09 Score=109.32 Aligned_cols=185 Identities=17% Similarity=0.132 Sum_probs=117.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (818)
+.+|+.+..-..+.+..-...|.+|-. +...|-.+.|.+|+.++.+||++||+.|.+|-+- . |-+.-..||
T Consensus 137 edIe~~ir~~~GD~H~p~T~LIclENT-~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGAR-----i--~NAavasgV~ 208 (384)
T KOG1368|consen 137 EDIEAAIRVPKGDCHMPPTKLICLENT-HNNCGGKVLPLEELDRVKALAKRHGLKLHMDGAR-----I--FNAAVASGVP 208 (384)
T ss_pred HHHHHhhcCCCCCccCCCceEEEeecc-ccccCceEeeHHHHHHHHHHHhccCCeeecchhh-----h--hhHHHHcCCC
Confidence 677877763221234445789999997 5655555669999999999999999999999432 1 233333333
Q ss_pred ------CCcE--EEecccccCCccccc-eeecchHHHhhcc-------CChH------------------HHH------H
Q 003466 681 ------VPDI--ACYGKLLTGGVIPLA-ATLATNAVFDSFV-------GDSK------------------LWD------L 720 (818)
Q Consensus 681 ------~PDi--vtlgKgLggGy~Pls-Avl~~~~i~~~l~-------~~~~------------------~~~------~ 720 (818)
..|- +|||||||. |+| .++++++.++... ++-+ .+. .
T Consensus 209 vk~i~~~fDSVsiCLSKglgA---PVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~~~L~~dHk~A~ 285 (384)
T KOG1368|consen 209 VKKICSAFDSVSICLSKGLGA---PVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENVPLLRADHKRAK 285 (384)
T ss_pred HHHHHHhhhhhhhhhhccCCC---CcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 2343 599999997 444 4667887765321 1111 010 1
Q ss_pred HHHHHHHcCCCe-eEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHH
Q 003466 721 ELIQQISSHRTV-QRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQL 797 (818)
Q Consensus 721 ~l~~~l~~~~~v-~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~ 797 (818)
.+.+.+...+.+ ..|- ..--|..+++.... ..+..+++.+.++||++.+.. .++|+...--+|+++++.+
T Consensus 286 ~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~-------~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~ 358 (384)
T KOG1368|consen 286 ELAEYINTPEEIRVEVPAVETNIVNMVLCQAR-------LTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYV 358 (384)
T ss_pred HHHHHhccccceeeecchhhcceeeeeccccc-------CCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHH
Confidence 122222222211 2222 22334445553332 347789999999999998753 7899999999999999999
Q ss_pred HHHHHHH
Q 003466 798 LLKLYQR 804 (818)
Q Consensus 798 ~~~l~~~ 804 (818)
+..+++.
T Consensus 359 ~~~~~k~ 365 (384)
T KOG1368|consen 359 KSVLSKK 365 (384)
T ss_pred HHHHHHH
Confidence 9999543
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-08 Score=113.42 Aligned_cols=306 Identities=12% Similarity=0.101 Sum_probs=170.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
.+||+..+. ..++. ++.+.+++.+.++... .+....+..+....+++.+....+.+ ..+.++++++|++|+..+
T Consensus 34 ~~i~l~~~~--~~~~~--~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (391)
T PRK08361 34 NVISLGIGE--PDFDT--PKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA 109 (391)
T ss_pred CeEEcCCCC--CCCCC--CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH
Confidence 466765543 22332 5788898888765421 11111233445556666665433311 125899999999999998
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++... ..| ..|++-+.+|.+.. ..+...|...
T Consensus 110 ~~~l~-----~~g----------------~~Vlv~~p~y~~~~-~~~~~~g~~~-------------------------- 141 (391)
T PRK08361 110 FESLL-----EEG----------------DEVIIPDPAFVCYV-EDAKIAEAKP-------------------------- 141 (391)
T ss_pred HHHhc-----CCC----------------CEEEEcCCCCcccH-HHHHHcCCEE--------------------------
Confidence 87651 122 25777776665532 2222222210
Q ss_pred cceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
+.+|..- +-.| .| .+.+++.+. .++.++++... ++..|..
T Consensus 142 ----~~v~~~~--------~~~~~~d------------------~~~l~~~i~--------~~~~~v~i~~p-~NPtG~~ 182 (391)
T PRK08361 142 ----IRIPLRE--------ENEFQPD------------------PDELLELIT--------KRTRMIVINYP-NNPTGAT 182 (391)
T ss_pred ----EEEecCC--------ccCCCCC------------------HHHHHHhcc--------cccEEEEEeCC-CCCCCcC
Confidence 0111000 0000 11 144555553 13445555532 6777876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCCCCcEE--Eeccccc-CCccccceeecchHHHhhcc
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv--tlgKgLg-gGy~PlsAvl~~~~i~~~l~ 712 (818)
. |.+-+++|.++|+++++++|+||++..|--.+. ......+....+++ ++||.+| .| +-+|.+++++++++.+.
T Consensus 183 ~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-lRiG~~~~~~~~~~~~~ 260 (391)
T PRK08361 183 L-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTG-WRLGFVIAPEQVIKDMI 260 (391)
T ss_pred c-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcH-hhhhhhccCHHHHHHHH
Confidence 6 788899999999999999999999976622221 11111111122333 7999997 67 68888999988876542
Q ss_pred CC--------hH--------H---------HH----------HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCCc
Q 003466 713 GD--------SK--------L---------WD----------LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYG 756 (818)
Q Consensus 713 ~~--------~~--------~---------~~----------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~ 756 (818)
.. .. . +. +.+.+.++.++.+.-.... |+++-+.+....
T Consensus 261 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~------ 334 (391)
T PRK08361 261 KLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETG------ 334 (391)
T ss_pred HHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCC------
Confidence 11 00 0 00 1123444555444323333 444444554211
Q ss_pred hHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 757 SLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 757 ~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
..+.++++.|+ ++||++.|+ .+.+|+... .+++++++++++|.+.+++
T Consensus 335 -~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 335 -MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKEKLIEAMERMEKALEE 390 (391)
T ss_pred -CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 11445777776 579999872 256788765 4678899999999887754
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.7e-08 Score=112.97 Aligned_cols=201 Identities=11% Similarity=0.057 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC----cccC---Cccch
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG----FWRL---GVETT 674 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG----fGRt---G~~~a 674 (818)
+.|++.+.. .+++++++|+++.. ++..|..+.+.+.+++|+++|++||+++|.|+++.. |+.. |....
T Consensus 164 e~Le~~i~~----~~~~~tk~Ivl~~p-~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~ 238 (460)
T PRK13238 164 EKLEALIEE----VGAENVPFIVMTIT-NNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDK 238 (460)
T ss_pred HHHHHHHhh----cCCCceeEEEEecC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCC
Confidence 667777763 23467899999875 666554566899999999999999999999998742 1110 10000
Q ss_pred h--cc---cCCCCcEEEecccccCCccccceeec-c-hHHHhhccCC-----hH-------------------------H
Q 003466 675 A--DL---LGCVPDIACYGKLLTGGVIPLAATLA-T-NAVFDSFVGD-----SK-------------------------L 717 (818)
Q Consensus 675 ~--e~---~gv~PDivtlgKgLggGy~PlsAvl~-~-~~i~~~l~~~-----~~-------------------------~ 717 (818)
. +. .+=-.|+++++ +--.|+.|.|.+++ + +++++.+... +. +
T Consensus 239 si~~i~~~~~s~~D~~~~S-g~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~ 317 (460)
T PRK13238 239 SIKEIAREMFSYADGLTMS-AKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDY 317 (460)
T ss_pred CHHHHhhhhcccCcEEEEe-cccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHH
Confidence 0 00 01126777766 33345567666666 4 4666544221 00 0
Q ss_pred H------HHHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec------------
Q 003466 718 W------DLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL------------ 777 (818)
Q Consensus 718 ~------~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~------------ 777 (818)
+ .+.+.+.|...+. .-+. ..|..+-+++..-..+.......+..++.+|+ +.||-+.|.
T Consensus 318 ~~~~~~~~~~l~~~L~~~G~-~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~ 396 (460)
T PRK13238 318 LAYRIGQVEYLGEGLEEAGV-PIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTG 396 (460)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCc
Confidence 0 0112333444332 1122 22344444443211111111111455776666 779988651
Q ss_pred ------CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHH
Q 003466 778 ------GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 778 ------g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~ 809 (818)
-+.+||..|- +.|.+++|.+.++|.+..+.-+
T Consensus 397 ~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~~ 435 (460)
T PRK13238 397 EQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKENRE 435 (460)
T ss_pred cccCCccceEEEecccccCCHHHHHHHHHHHHHHHHhHh
Confidence 1678998886 5699999999999988775544
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.8e-08 Score=109.39 Aligned_cols=307 Identities=14% Similarity=0.117 Sum_probs=174.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCC--CCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG--WASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~--~l~~v~f~~SGseA~e~ 476 (818)
.+||+..|... ++. .+.+.+++.+.+... ..+....+..+....+++.+....+.. .-+.++++++|++|+..
T Consensus 31 ~~i~l~~~~~~--~~~--~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 31 GILKLTLGEPD--FTT--PDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CeEEcCCCCCC--CCC--CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 56777665432 332 577888888877542 112112233445556666665433311 01579999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
++.... ..| ..|+.-..+|.+.. ......|...
T Consensus 107 ~~~~~~-----~~g----------------d~vl~~~p~y~~~~-~~~~~~g~~~------------------------- 139 (391)
T PRK07309 107 SLTAIL-----EPG----------------DKVLLPAPAYPGYE-PIVNLVGAEI------------------------- 139 (391)
T ss_pred HHHHhc-----CCC----------------CEEEEeCCCCcchH-HHHHHcCCEE-------------------------
Confidence 888651 122 36788888887743 2222222110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG~ 635 (818)
..++.+.. .|. + + .+.+++.+.. ..+++.+|++. | ++..|.
T Consensus 140 ---~~~~~~~~-----------~~~-~--------d--------~~~l~~~~~~-----~~~~~~~i~l~~P--~NPtG~ 181 (391)
T PRK07309 140 ---VEIDTTEN-----------DFV-L--------T--------PEMLEKAILE-----QGDKLKAVILNYP--ANPTGV 181 (391)
T ss_pred ---EEEecCCc-----------CCc-C--------C--------HHHHHHHhhc-----cCCCeEEEEEECC--CCCCCc
Confidence 00110000 000 0 0 1456666652 23456677766 5 567777
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccCCCCc--E--EEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--I--ACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD--i--vtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
.. +.+-+++|.++|++||+++|+||++..|--.|.. .....+ .+| + -++||.+| .| +-+|.+++++++++
T Consensus 182 ~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~ 257 (391)
T PRK07309 182 TY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTA 257 (391)
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh--ccCCEEEEecChhhccCcc-ceeEEEEeCHHHHH
Confidence 66 6788999999999999999999999766322421 111111 233 2 27999997 67 78999999998877
Q ss_pred hccCChH----------------HHH-----------------HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCC
Q 003466 710 SFVGDSK----------------LWD-----------------LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~~----------------~~~-----------------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~ 755 (818)
.+..... .+. +.+.+.++.++ +.-.... |.++-+.+....
T Consensus 258 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~p~gg~~~~~~l~~~~----- 331 (391)
T PRK07309 258 QLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDLG-FKIIKPDGAFYIFAKIPAGY----- 331 (391)
T ss_pred HHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEEECCCCC-----
Confidence 6542110 110 01223334443 2212222 344434443210
Q ss_pred chHHHHHHHHH-HHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKK-LREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 756 ~~~~a~~~~~~-l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
. .....+++. +.++||++.|+ ++.+|+... .+++++++++++|.++++++
T Consensus 332 ~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 332 N-QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred C-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 0 124456765 45789999873 257888766 36789999999999888664
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-08 Score=112.53 Aligned_cols=302 Identities=17% Similarity=0.113 Sum_probs=170.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCCC-C-CcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~~-l-~~v~f~~SGseA~e~ 476 (818)
.+||+..|.. .++ . ++.+.+++.+.++... .+....+..+...++++.+.+..+... . +.++++++|++|+..
T Consensus 31 ~~i~l~~g~~--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~ 106 (386)
T PRK09082 31 GAINLSQGFP--DFD-G-PPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA 106 (386)
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence 5677766532 233 3 6889999888765421 111223345667788888877655321 1 268899999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++... ..| ..|+..+-+|.+. ..++...|..
T Consensus 107 ~~~~~~-----~~g----------------d~Vli~~p~y~~~-~~~~~~~g~~-------------------------- 138 (386)
T PRK09082 107 AILALV-----RPG----------------DEVIVFDPSYDSY-APAIELAGGR-------------------------- 138 (386)
T ss_pred HHHHHc-----CCC----------------CEEEEeCCCchhh-HHHHHHcCCE--------------------------
Confidence 888651 222 2566666655442 2222222211
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
.+.+|.... + |+ .+ .+.+++.+. .++.+|++... ++..|..
T Consensus 139 ----~~~~~~~~~-------~--~~---------~d--------~~~l~~~~~--------~~~~~v~l~~p-~NPtG~~ 179 (386)
T PRK09082 139 ----AVRVALQPP-------D--FR---------VD--------WQRFAAAIS--------PRTRLIILNTP-HNPSGTV 179 (386)
T ss_pred ----EEEEecCcc-------c--cc---------CC--------HHHHHHhcC--------ccceEEEEeCC-CCCCCcC
Confidence 011110000 0 00 00 144555553 24556666554 6777776
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc--hhcccCCCCcE---EEeccccc-CCccccceeecchHHHhh
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVFDS 710 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~--a~e~~gv~PDi---vtlgKgLg-gGy~PlsAvl~~~~i~~~ 710 (818)
. +++-+++|.++|++||+++|+||++..+--.+..+ .....+..+.+ -+|||.+| .| +-+|.+++++++++.
T Consensus 180 ~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~ 257 (386)
T PRK09082 180 W-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTG-WKVGYCVAPAALSAE 257 (386)
T ss_pred C-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchh-hhhhhhhCCHHHHHH
Confidence 6 68899999999999999999999986542222211 11222322222 27999997 56 788899999988876
Q ss_pred ccCChH----------------HHH-----------------HHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCc
Q 003466 711 FVGDSK----------------LWD-----------------LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYG 756 (818)
Q Consensus 711 l~~~~~----------------~~~-----------------~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~ 756 (818)
+..... ++. +.+.+.++.+. +.-.. ..|+++-+.+.+-.
T Consensus 258 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~g~~~~~~~~~~~~------ 330 (386)
T PRK09082 258 FRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANSR-FKLLPCEGTYFQLVDYSAIS------ 330 (386)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCeeEEEEEeccccC------
Confidence 543210 111 01122333332 21111 23455555654210
Q ss_pred hHHHHHHHHHH-HhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 757 SLYAASLLKKL-REDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 757 ~~~a~~~~~~l-~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
......+++.| .++||.+.|+ .+.+|++.. .+++++++.+++|.+
T Consensus 331 ~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~--~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 331 DLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA--KQEETLDAAAERLCQ 385 (386)
T ss_pred CCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence 01245677776 5779999873 146888765 478889998888764
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.2e-08 Score=111.53 Aligned_cols=204 Identities=14% Similarity=0.091 Sum_probs=121.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhh---hcccccCCCC-----CChhHHHHHHHHHhccCCCCCCcEEEeCChh
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAA---RFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~---~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGs 471 (818)
-|+|..+ .+-- ++.+.+|+.+.+. .++....... ..+...++.++++++++.+ .+.++|+++|+
T Consensus 5 iyld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~-~~~v~~~~g~t 76 (404)
T PRK14012 5 IYLDYSA------TTPV-DPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD-PREIVFTSGAT 76 (404)
T ss_pred EEecCcC------CCCC-CHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC-cCeEEEeCCHH
Confidence 6788665 3555 8999999988775 2221110000 0134567778888888743 35699999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccccccc---CCCCCCCcCCCCcccCCCccc
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ---APSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~t---g~~~~~~~~~~p~~~~~~~~~ 548 (818)
+|+..+++.+.+.+. ..| ..||+-... |.+...+.... |..
T Consensus 77 ~al~~~l~~l~~~~~-~~g----------------d~Vi~~~~~-~~s~~~~~~~~~~~g~~------------------ 120 (404)
T PRK14012 77 ESDNLAIKGAAHFYQ-KKG----------------KHIITSKTE-HKAVLDTCRQLEREGFE------------------ 120 (404)
T ss_pred HHHHHHHHHHHHhhc-CCC----------------CEEEEecCc-cHHHHHHHHHHHhCCCE------------------
Confidence 999999987622221 111 245555554 44333322110 100
Q ss_pred CCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
...++.+..+ ..| .+.+++.|. .+..+|++..+
T Consensus 121 ----------~~~v~~~~~g-----------~~d------------------~~~l~~~i~--------~~t~lv~~~~~ 153 (404)
T PRK14012 121 ----------VTYLDPQSNG-----------IID------------------LEKLEAAMR--------DDTILVSIMHV 153 (404)
T ss_pred ----------EEEEccCCCC-----------cCC------------------HHHHHHhcC--------CCCEEEEEECc
Confidence 0011111000 001 255666664 24567878876
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchH
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA 706 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~ 706 (818)
++..|.+.+ +++|.++|++||+++|+|++|+ +|..- . ......+|+++++ |.+|.+ .+|+++++++
T Consensus 154 -~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~--~--~~~~~~~D~~~~s~~K~~gp~--g~G~l~~~~~ 221 (404)
T PRK14012 154 -NNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP--I--DLSKLKVDLMSFSAHKIYGPK--GIGALYVRRK 221 (404)
T ss_pred -CCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc--c--CcccCCCCEEEEehhhccCCC--ceEEEEEecC
Confidence 788888876 8999999999999999999995 43331 1 1112358999888 976532 3667777654
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-08 Score=109.35 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=109.4
Q ss_pred cEEEEE-EccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hh-cccCCCCcEE---Eeccccc
Q 003466 619 CIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DLLGCVPDIA---CYGKLLT 692 (818)
Q Consensus 619 ~iAAVI-vEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~-e~~gv~PDiv---tlgKgLg 692 (818)
++.+|+ .-| +...|.+. +.+-+++|.++|+++|+++|+||++.+|...|... .. ...+..+.++ +|||.++
T Consensus 162 ~~~~v~i~~p--~NPtG~~~-~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~ 238 (397)
T PRK07568 162 KTKAILISNP--GNPTGVVY-TKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYS 238 (397)
T ss_pred cceEEEEECC--CCCCCccC-CHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhcc
Confidence 344554 455 56677655 77889999999999999999999999885555321 11 1122233343 7999998
Q ss_pred C-Cccccceeecc-hHHHhhccC---C----hH--------HHH-----------------HHHHHHHHcCCCeeEEEee
Q 003466 693 G-GVIPLAATLAT-NAVFDSFVG---D----SK--------LWD-----------------LELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 693 g-Gy~PlsAvl~~-~~i~~~l~~---~----~~--------~~~-----------------~~l~~~l~~~~~v~~vrg~ 738 (818)
. | +.+|.++++ +++++.+.. . +. .+. +.+.+.|+.++.+.-....
T Consensus 239 ~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~ 317 (397)
T PRK07568 239 ACG-ARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPK 317 (397)
T ss_pred CCC-cceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC
Confidence 4 7 799999884 667654321 0 00 110 1123444555443323334
Q ss_pred ee-EEEEEEecCcccCCCchHHHHHHHHHHHh------CCceEeec----------CCEEEEECCCCChHHHHHHHHHHH
Q 003466 739 GT-LCAIELQAAGCNAGYGSLYAASLLKKLRE------DGVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 739 Gl-~~~iel~~~~~~~~~~~~~a~~~~~~l~e------~Gvlv~p~----------g~~ir~~ppl~~t~edId~~~~~l 801 (818)
|. ++-+.+... .+..+++.|.+ +||++.|+ ++.+|++.. .+++++++++++|
T Consensus 318 g~~~~~~~l~~~---------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~--~~~~~~~~~~~~l 386 (397)
T PRK07568 318 GAFYIIAKLPVD---------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV--LNEEDLKRAMEIL 386 (397)
T ss_pred cceEEEEecCCC---------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe--CCHHHHHHHHHHH
Confidence 43 333444321 13456677764 69999872 147888754 5689999999999
Q ss_pred HHHHHHHH
Q 003466 802 YQRLEEFD 809 (818)
Q Consensus 802 ~~~l~~l~ 809 (818)
.+++++..
T Consensus 387 ~~~l~~~~ 394 (397)
T PRK07568 387 KEALEKYN 394 (397)
T ss_pred HHHHHHhh
Confidence 99887643
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-08 Score=113.13 Aligned_cols=300 Identities=12% Similarity=0.056 Sum_probs=171.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC-CCCCChhHHHHHHHHHhccCCC-CC-CcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~-~~~~~~~~~eLae~L~~~~~~~-~l-~~v~f~~SGseA~e~ 476 (818)
.+||+..|.. .++ - .+.+.+++.+.+........ ..+..+....+++.+....+.. .. +.+++++++++|...
T Consensus 33 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~ 108 (399)
T PRK07681 33 KMIDLSIGNP--DMP-P-ADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVH 108 (399)
T ss_pred CeEEeCCCCC--CCC-C-CHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHH
Confidence 6778776532 233 2 67889998887654221111 1344556677777776543321 12 478999999998888
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.. -..| ..|++.+-+|.+....+. ..|..
T Consensus 109 ~~~~~-----~~~G----------------d~Vlv~~P~y~~~~~~~~-~~G~~-------------------------- 140 (399)
T PRK07681 109 LPMVY-----ANPG----------------DIILVPDPGYTAYETGIQ-MAGAT-------------------------- 140 (399)
T ss_pred HHHHh-----CCCC----------------CEEEECCCCccchHHHHH-hcCCE--------------------------
Confidence 77654 1222 367887888876432221 11111
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG~ 635 (818)
.+++|-.- -+ .|. .+ .+.+++.+. .++.+|++- | ++-.|.
T Consensus 141 ----~~~v~~~~-----------~~----~~~--~d--------~~~l~~~~~--------~~~k~v~l~~P--~NPTG~ 181 (399)
T PRK07681 141 ----SYYMPLKK-----------EN----DFL--PD--------LELIPEEIA--------DKAKMMILNFP--GNPVPA 181 (399)
T ss_pred ----EEEEecCC-----------CC----CCc--CC--------HHHHHHhcc--------ccceEEEEeCC--CCCcCc
Confidence 11111000 00 000 00 133444442 234555554 7 677787
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-h-hcccCC---CCcEEEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-T-ADLLGC---VPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a-~e~~gv---~PDivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. +.+-+++|.++|++||+++|.||++..|--.+... . .+..+. .-.+-+|||.+| .| +-+|.+++++++++
T Consensus 182 ~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~ 259 (399)
T PRK07681 182 MA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAG-SRIGYMIGNEEIVR 259 (399)
T ss_pred CC-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCcc-ceeEEEecCHHHHH
Confidence 76 78889999999999999999999998662222211 1 111111 112348999997 67 68899999998887
Q ss_pred hccCCh--------H--------HH-------H----------HHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCCC
Q 003466 710 SFVGDS--------K--------LW-------D----------LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~--------~--------~~-------~----------~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~ 755 (818)
.+.... . .+ . +.+.+.++.++ +.-... .|.++-+.+...
T Consensus 260 ~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~~g~f~~~~l~~~------ 332 (399)
T PRK07681 260 ALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTFG-WNVDKPAGSMFVWAEIPKG------ 332 (399)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCeeeEEEEECCCC------
Confidence 653211 0 00 0 11233444443 221122 255555555322
Q ss_pred chHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 756 ~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
..+.+++..|++ +||++.|+ .+.+|+... .+++++++++++|.+
T Consensus 333 --~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 333 --WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN 384 (399)
T ss_pred --CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 124568888887 89999873 146788765 568999999999987
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.9e-08 Score=107.89 Aligned_cols=170 Identities=12% Similarity=0.082 Sum_probs=103.7
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCcc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~ 696 (818)
+..+|++..+ ++..|.+.+ +++|.++|++||+++|+|++|. +|.. - .......+|+++++ |-+| .
T Consensus 140 ~t~lv~~~~~-~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~--~~~~~~~~D~~~~s~~K~~g---p 206 (382)
T TIGR03403 140 KTALVSVMWA-NNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--P--VDVQKAGVDFLSFSAHKFHG---P 206 (382)
T ss_pred CCeEEEEEcc-cCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--c--cCccccCCCEEEEcchhhCC---C
Confidence 3466777765 788898886 7899999999999999999985 4321 1 11112347899888 9533 1
Q ss_pred c-cceeecchHHH--hhcc---------CChH---------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 697 P-LAATLATNAVF--DSFV---------GDSK---------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 697 P-lsAvl~~~~i~--~~l~---------~~~~---------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
| +|++..++... ..+. .+.. .+.+.+.+.++..+.+.-+..
T Consensus 207 ~G~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 286 (382)
T TIGR03403 207 KGVGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGD 286 (382)
T ss_pred CceEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 2 45554444321 1110 0000 011123334444444322211
Q ss_pred e----eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCC
Q 003466 738 L----GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCS 789 (818)
Q Consensus 738 ~----Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~ 789 (818)
. ..++.+.+... .+..+.+.|.++||.++.+ +..+|+++....
T Consensus 287 ~~~~~~~~~~~~~~~~---------~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~ 357 (382)
T TIGR03403 287 REHRVPNTILISIKGV---------EGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFT 357 (382)
T ss_pred CCCCcCCEEEEEeCCC---------CHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCC
Confidence 1 22333444221 1445666788999999841 246999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003466 790 SPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 790 t~edId~~~~~l~~~l~~l~~ 810 (818)
|++|||+++++|+++++++..
T Consensus 358 t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 358 TEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998887654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-08 Score=108.41 Aligned_cols=302 Identities=12% Similarity=0.029 Sum_probs=168.1
Q ss_pred eeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHHHHH
Q 003466 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEIAL 478 (818)
Q Consensus 401 ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e~AL 478 (818)
.+|+.+|.. .++- .|++.+++++.+.....+....+..+....+++.+....+-. ..+ .+++++++++|...++
T Consensus 2 ~~~~~~g~p--~~~~--~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~ 77 (350)
T TIGR03537 2 LFDFGTGDP--KEPT--PPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred eEeccCCCC--CCCC--CHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence 567776543 3442 578999998876543322222233455666777765543321 023 7999999999887776
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
... ...|+ ....|+.-+-+|.+....+.. .|.+
T Consensus 78 ~~~-----~~~g~-------------~~d~Vl~~~p~y~~~~~~~~~-~g~~---------------------------- 110 (350)
T TIGR03537 78 LVF-----IDPEE-------------DRRRVIFGTPGYPVYERGALF-AGGE---------------------------- 110 (350)
T ss_pred HHH-----cCCCC-------------CCceEEEcCCCCcchHHHHHh-cCCE----------------------------
Confidence 644 11110 113788888888765433221 1111
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
.+.+|.... ++ |. + + .+.+++.+.+ ++.++++.+- ++-.|.+.
T Consensus 111 --~~~v~~~~~------~~--~~-~--------d--------~~~l~~~~~~--------~~~~i~i~~p-~NPtG~~~- 153 (350)
T TIGR03537 111 --PTAVKLKKE------DG--FL-L--------R--------LEKVEKSILE--------ETKIVWINYP-HNPTGATA- 153 (350)
T ss_pred --EEEcccCcc------cC--Cc-c--------C--------HHHHHHhhhh--------ccEEEEEeCC-CCCcCccc-
Confidence 011110000 00 00 0 0 1445555541 3445555543 67778665
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCCCCcEE--Eeccccc-CCccccceeecchHHHhhccCC
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv--tlgKgLg-gGy~PlsAvl~~~~i~~~l~~~ 714 (818)
+.+-+++|.++|++||+++|.||++.-+ ..+. ......++....++ ++||.+| .| +-+|.+++++++.+.+...
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~ 231 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECYTEI-YFGEPPHSALEVGIENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRKL 231 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccccc-ccCCCCCchhhcCcCCEEEEeecccccCCcc-ccceeeecCHHHHHHHHHH
Confidence 8899999999999999999999998543 2222 11111122111233 6899986 45 6788888888877655321
Q ss_pred hH----------------------HH---H-------HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCCchHHHH
Q 003466 715 SK----------------------LW---D-------LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 715 ~~----------------------~~---~-------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
.. .+ . +.+.+.++.++. .-.... |+++-+++... ..+.
T Consensus 232 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~g~-~~~~~~g~~~~~~~~~~~--------~~~~ 302 (350)
T TIGR03537 232 RANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKVGL-EYLYPDATFYLWVKVPSG--------IDAK 302 (350)
T ss_pred HHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCCC-cccCCCeEEEEEEECCCC--------CCHH
Confidence 00 00 0 112233344432 111222 44455555432 1245
Q ss_pred HHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
.+++.|.++||++.|+ .+.+|+... .+++++++++++|.+
T Consensus 303 ~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 303 DYALRLLENGIVVAPGENFGSGEEGYVRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred HHHHHHHHCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHhc
Confidence 7889999999999862 256787653 568889988887754
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-08 Score=112.83 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCcEEEeecc-cCcccCCccchhcccCCCCcEE--EecccccCCccccceeecch-HHHhhccCC----
Q 003466 643 QRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATN-AVFDSFVGD---- 714 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~-~i~~~l~~~---- 714 (818)
+++|.++|++||+++|+||+| .|+--.|... ..+. ..|++ +++|+++| .+.|++++++ ++++.+...
T Consensus 178 ~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~--~~~~-~~dv~~~s~sK~l~G--~~gg~i~~~~~~~~~~l~~~~~~~ 252 (402)
T cd00378 178 FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP--NPLP-GADVVTTTTHKTLRG--PRGGLILTRKGELAKKINSAVFPG 252 (402)
T ss_pred HHHHHHHHHhcCCEEEEEccchhhhhhcccCC--Cccc-CCcEEEeccccCCCC--CCceEEEeccHHHHHHHHHHhCcc
Confidence 899999999999999999997 3431122111 1111 35765 68899944 4677788876 776544210
Q ss_pred ----hH-------------HHH--------------HHHHHHHHcCCCeeEE-E-eeeeEEEEEEecCcccCCCchHHHH
Q 003466 715 ----SK-------------LWD--------------LELIQQISSHRTVQRV-V-ALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 715 ----~~-------------~~~--------------~~l~~~l~~~~~v~~v-r-g~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
.. ... +.+.+.|.+++. .-+ . ..+.++-+.+.... ....
T Consensus 253 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~v~v~~~~~~-------~~~~ 324 (402)
T cd00378 253 LQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGF-KVVSGGTDNHLVLVDLRPKG-------ITGK 324 (402)
T ss_pred ccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCC-eEeecCCCCeEEEEeCCccC-------CCHH
Confidence 00 000 012233444432 111 1 12444445543221 1123
Q ss_pred HHHHHHHhCCceEee-----------cCCEEEEECCCC----ChHHHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRP-----------LGNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p-----------~g~~ir~~ppl~----~t~edId~~~~~l~~~l~~l~ 809 (818)
.+.+.|.++||++.+ ..+.+|+.+... ++++||+++++.|.+++.+-+
T Consensus 325 ~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 325 AAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred HHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 556678889999963 225789877663 479999999999999887655
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-08 Score=110.48 Aligned_cols=292 Identities=14% Similarity=0.114 Sum_probs=168.6
Q ss_pred CHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-C-CCcEEEeCChhHHHHHHHHHHHHHhhhcccccc
Q 003466 418 QIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-W-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~-l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~ 493 (818)
++.+.+|+.+.+..... +....+..+....+++.|++..+.. . .+.+++++++++|...++.... ..|
T Consensus 42 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~-----~~g--- 113 (389)
T PRK05957 42 PPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT-----DPG--- 113 (389)
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc-----CCC---
Confidence 67889999887654321 1122344566778888888876532 0 2468888888888877776541 122
Q ss_pred cccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcc
Q 003466 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (818)
Q Consensus 494 ~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~ 573 (818)
..|++-+.+|-+... .....|.. .+.+|..
T Consensus 114 -------------d~Vlv~~P~y~~~~~-~~~~~g~~------------------------------~~~v~~~------ 143 (389)
T PRK05957 114 -------------DEIILNTPYYFNHEM-AITMAGCQ------------------------------PILVPTD------ 143 (389)
T ss_pred -------------CEEEEeCCCCcCHHH-HHHhcCCE------------------------------EEEeecC------
Confidence 257776666643211 11111111 1111100
Q ss_pred ccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc
Q 003466 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (818)
Q Consensus 574 ~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~ 653 (818)
++ +. .+ .+.+++.+. +++.+|++-.. +...|.+. |.+-+++|.++|++|
T Consensus 144 -------~~----~~--~d--------~~~l~~~i~--------~~~klv~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~ 192 (389)
T PRK05957 144 -------DN----YQ--LQ--------PEAIEQAIT--------PKTRAIVTISP-NNPTGVVY-PEALLRAVNQICAEH 192 (389)
T ss_pred -------CC----CC--cC--------HHHHHHhcC--------cCceEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHc
Confidence 00 00 00 145555553 23445555443 77788777 788999999999999
Q ss_pred CCcEEEeecccCcccCCcc-ch-hcccCCCC---cEEEeccccc-CCccccceeecchHHHhhccCChH-----------
Q 003466 654 KIPVIFDEVFTGFWRLGVE-TT-ADLLGCVP---DIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSK----------- 716 (818)
Q Consensus 654 gilLI~DEV~TGfGRtG~~-~a-~e~~gv~P---DivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~~----------- 716 (818)
|+++|.||++..|--.+.- .. ....+..+ .+.+|||.+| .| +-+|.+++++++++.+.....
T Consensus 193 ~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q 271 (389)
T PRK05957 193 GIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFAS-WRIGYMVIPIHLLEAIKKIQDTILICPPVVSQ 271 (389)
T ss_pred CcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCcHHH
Confidence 9999999999766322211 11 11112222 2447999997 67 789999999998876642110
Q ss_pred ------------HHH----------HHHHHHHHcCCCeeEE-Eee-eeEEEEEEecCcccCCCchHHHHHHHHHHH-hCC
Q 003466 717 ------------LWD----------LELIQQISSHRTVQRV-VAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDG 771 (818)
Q Consensus 717 ------------~~~----------~~l~~~l~~~~~v~~v-rg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~G 771 (818)
.++ +.+.+.++.++.+..+ ... |+++-+++... ....++++.|+ ++|
T Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~--------~~~~~~~~~l~~~~g 343 (389)
T PRK05957 272 YAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTD--------LNDFELVKQLIREYR 343 (389)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCC--------CChHHHHHHHHHHCC
Confidence 011 0122334444332111 122 44444555322 12556888887 589
Q ss_pred ceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 772 VYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 772 vlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|++.|+ ++.+|+.... .+++++++.+++|.+.++++
T Consensus 344 v~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~~~ 386 (389)
T PRK05957 344 VAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLKTI 386 (389)
T ss_pred EEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHHhh
Confidence 999983 2468887644 47889999999998888764
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-08 Score=112.76 Aligned_cols=168 Identities=13% Similarity=0.149 Sum_probs=107.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHh--cCCcEEEeecccCcccCCcc-chhcccCCCCcEE---Eeccccc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT 692 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~--~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgKgLg 692 (818)
+..+|++... +...|.+.+ .+++.++|++ +|+++|+||++..|-..+.. .....+.-.++++ +|||.+|
T Consensus 145 ~~~~v~l~~p-~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g 219 (352)
T PRK03321 145 RTRLIFVCNP-NNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYG 219 (352)
T ss_pred CCCEEEEeCC-CCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhh
Confidence 3445555543 777888875 4455666655 69999999999877444432 1222223345655 6899998
Q ss_pred -CCccccceeecchHHHhhccCChH--------------------HH----------HHHHHHHHHcCCCeeEEEeeeeE
Q 003466 693 -GGVIPLAATLATNAVFDSFVGDSK--------------------LW----------DLELIQQISSHRTVQRVVALGTL 741 (818)
Q Consensus 693 -gGy~PlsAvl~~~~i~~~l~~~~~--------------------~~----------~~~l~~~l~~~~~v~~vrg~Gl~ 741 (818)
.| +.+|.+++++++++.+..... .+ ...+.+.++..+. ......|.+
T Consensus 220 ~~G-lRiG~~v~~~~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~~~-~~~~~~g~~ 297 (352)
T PRK03321 220 LAG-LRVGYAVGHPEVIAALRKVAVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAAGW-TVPPSQANF 297 (352)
T ss_pred hHH-HhhhhhcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCCCCE
Confidence 67 688999999999887643211 00 0112333444432 112234666
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+-+.+... +..+++.|.++||++.+.+ +.||+.. .++++.++++++|++++.
T Consensus 298 i~i~l~~~----------~~~~~~~l~~~gI~v~~~~~~~iRi~~---~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 298 VWLPLGER----------TADFAAAAAEAGVVVRPFAGEGVRVTI---GAPEENDAFLRAARAWRA 350 (352)
T ss_pred EEEeCCCC----------HHHHHHHHHHCCEEEEccCCCcEEEee---CCHHHHHHHHHHHHHHhc
Confidence 65655321 4578889999999999864 5688885 578999999999988754
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.3e-08 Score=109.51 Aligned_cols=300 Identities=11% Similarity=0.040 Sum_probs=167.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e 475 (818)
.+||+..+. .-... +|.+.+++.+.++... .+....+..+...++++.+....+.+ ..+ .++.+++|+++..
T Consensus 33 ~~i~l~~~~---p~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~ 108 (389)
T PRK08068 33 DVINLGQGN---PDQPT-PEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLV 108 (389)
T ss_pred CeEEecCCC---CCCCC-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHH
Confidence 567776642 22345 7889999998876421 11111233456666777665433321 124 6888888889888
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.++... -..| ..|+..+-+|.+.... +...|..
T Consensus 109 ~~~~~~-----~~~g----------------d~vlv~~P~y~~~~~~-~~~~g~~------------------------- 141 (389)
T PRK08068 109 ELPQCL-----MNPG----------------DTILVPDPGYPDYLSG-VALARAQ------------------------- 141 (389)
T ss_pred HHHHHh-----CCCC----------------CEEEEcCCCCcchHHH-HHhcCCE-------------------------
Confidence 776654 1122 3577777777543221 1111111
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCC
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGG 634 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG 634 (818)
.+.+|..- + + .|. .| .+.+++.+. .++.+|++ .| ++-.|
T Consensus 142 -----~~~i~~~~--------~---~----~~~--~d--------~~~l~~~~~--------~~~~~v~l~~P--~NPTG 181 (389)
T PRK08068 142 -----FETMPLIA--------E---N----NFL--PD--------YTKIPEEVA--------EKAKLMYLNYP--NNPTG 181 (389)
T ss_pred -----EEEeeccc--------c---c----CCC--CC--------HHHHHHhcc--------ccceEEEEECC--CCCCC
Confidence 01111000 0 0 000 00 134444442 13444444 46 67778
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-c-chhcccCCCC---cEEEeccccc-CCccccceeecchHHH
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLLGCVP---DIACYGKLLT-GGVIPLAATLATNAVF 708 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~-~a~e~~gv~P---DivtlgKgLg-gGy~PlsAvl~~~~i~ 708 (818)
.+. +.+-+++|.++|++||+++|+||++..|...+. . ......+..+ .+-+|||.+| .| +-+|.++++++++
T Consensus 182 ~~~-s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~ 259 (389)
T PRK08068 182 AVA-TKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAG-WRVAFAVGNESVI 259 (389)
T ss_pred CcC-CHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcc-ceeEeEecCHHHH
Confidence 766 889999999999999999999999976644442 1 1112222222 2348999997 67 7889999999888
Q ss_pred hhccCChH----------------HH----------H-------HHHHHHHHcCCCeeEEEeee-eEEEEEEecCcccCC
Q 003466 709 DSFVGDSK----------------LW----------D-------LELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAG 754 (818)
Q Consensus 709 ~~l~~~~~----------------~~----------~-------~~l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~~~~ 754 (818)
+.+..... .+ . +.+.+.++.++. .-....| .++-+.+...
T Consensus 260 ~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~g~-~~~~~~g~~~~~v~~~~~----- 333 (389)
T PRK08068 260 EAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREIGW-EVDAPKGSFFAWMPVPKG----- 333 (389)
T ss_pred HHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCC-cccCCCeeEEEEEECCCC-----
Confidence 76532100 00 0 112333444432 2223344 4444555322
Q ss_pred CchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
..+..+++.|++ +||++.|+ .+.+|++.. ..++.+.+.+++|.+
T Consensus 334 ---~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~ 385 (389)
T PRK08068 334 ---YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL--TDEERLREAVERIGK 385 (389)
T ss_pred ---CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 124578889986 69999872 257888774 456677777776654
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.9e-09 Score=116.96 Aligned_cols=139 Identities=12% Similarity=0.106 Sum_probs=91.6
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCcc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVI 696 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~ 696 (818)
+..+|++|.. .+..|.+.+ +++|.++|+++|+++|+||+++ .+-.+... .+| .|++ +++|.++|.-.
T Consensus 146 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~pl---~~g--~Div~~S~sK~l~g~g~ 214 (386)
T PRK06767 146 NTKLIFVETP-INPTMKLID----LKQVIRVAKRNGLLVIVDNTFC-SPYLQRPL---ELG--CDAVVHSATKYIGGHGD 214 (386)
T ss_pred CceEEEEeCC-CCCCceecC----HHHHHHHHHHcCCEEEEECCCc-ccccCCch---hcC--CcEEEecCcceecCCCC
Confidence 4678899976 777787775 8999999999999999999984 22222211 123 4776 45699987225
Q ss_pred cc-ceeecchHHHhhccCC------h---H---------------H------HHHHHHHHHHcCCCeeEEE---------
Q 003466 697 PL-AATLATNAVFDSFVGD------S---K---------------L------WDLELIQQISSHRTVQRVV--------- 736 (818)
Q Consensus 697 Pl-sAvl~~~~i~~~l~~~------~---~---------------~------~~~~l~~~l~~~~~v~~vr--------- 736 (818)
++ |+++++++.++.+... . . . ....+.+.|+++|.|..|.
T Consensus 215 ~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~ 294 (386)
T PRK06767 215 VVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASR 294 (386)
T ss_pred ceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHH
Confidence 65 6788888766543210 0 0 1 1123456678888877655
Q ss_pred ---eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe
Q 003466 737 ---ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR 775 (818)
Q Consensus 737 ---g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~ 775 (818)
+.|.|+.+++.... +.+.+|.+.|...++.+.
T Consensus 295 ~~~~~gg~vsf~l~~~~-------~~~~~f~~~l~~~~~~~s 329 (386)
T PRK06767 295 QMKRGGGVISFSIKGGK-------EETQAFINDLHFITIAVS 329 (386)
T ss_pred hCCCCCceEEEEEcCCH-------HHHHHHHHhCCccEEecC
Confidence 67889999986331 346678888876665554
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.6e-08 Score=110.91 Aligned_cols=291 Identities=16% Similarity=0.137 Sum_probs=181.9
Q ss_pred CHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCCC-CCc-EEEeCChhHHHHHHHHHHHHHhhhccccccc
Q 003466 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGW-ASR-AYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~~-l~~-v~f~~SGseA~e~ALklA~r~~t~~~G~~~~ 494 (818)
++.+.+|+.+++.... ++....+.-+....+++++....+-.. .+. |+.++++++|+-.++... -..|+
T Consensus 43 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~-----~~pGD--- 114 (393)
T COG0436 43 PEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLAL-----LNPGD--- 114 (393)
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHh-----cCCCC---
Confidence 6789999999998764 443445667778888888888654210 124 999999999999998876 22332
Q ss_pred ccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC--c-chhhhh
Q 003466 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL--P-EWLYSK 571 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~--P-~~~~~~ 571 (818)
.||..+-+|-........+++... .+++ + ..|
T Consensus 115 -------------eVlip~P~Y~~y~~~~~~~gg~~v-----------------------------~v~l~~~~~~f--- 149 (393)
T COG0436 115 -------------EVLIPDPGYPSYEAAVKLAGGKPV-----------------------------PVPLDEEENGF--- 149 (393)
T ss_pred -------------EEEEeCCCCcCHHHHHHhcCCEEE-----------------------------EEeCCcCccCC---
Confidence 588888888654322222222110 0000 0 011
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
..| .+.|++.+. + ++.+|++ -| .+-.|.+. +++.+++|.++|
T Consensus 150 --------~~d------------------~~~l~~~i~-------~-ktk~i~ln~P--~NPTGav~-~~~~l~~i~~~a 192 (393)
T COG0436 150 --------KPD------------------LEDLEAAIT-------P-KTKAIILNSP--NNPTGAVY-SKEELKAIVELA 192 (393)
T ss_pred --------cCC------------------HHHHHhhcC-------c-cceEEEEeCC--CCCcCcCC-CHHHHHHHHHHH
Confidence 011 255666664 2 5556666 55 67777766 899999999999
Q ss_pred HhcCCcEEEeecccCcccCCc-cc-hhcccCC---CCcEEEeccccc-CCccccceeecc-hHHHhhccCC-------hH
Q 003466 651 QNRKIPVIFDEVFTGFWRLGV-ET-TADLLGC---VPDIACYGKLLT-GGVIPLAATLAT-NAVFDSFVGD-------SK 716 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~-~~-a~e~~gv---~PDivtlgKgLg-gGy~PlsAvl~~-~~i~~~l~~~-------~~ 716 (818)
++||+.+|.|||..+|--.|. .- ..+..+- .--+-.|||..+ -| +-+|.++++ +++++.+..- ..
T Consensus 193 ~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~~~~~~~~~~~~ 271 (393)
T COG0436 193 REHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTG-WRIGWVVGPPEELIAALRKLKSYLTSCAP 271 (393)
T ss_pred HHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccc-cceeEeecChHHHHHHHHHHHHhcccCCC
Confidence 999999999999999977774 22 2222221 112337999887 45 788889998 7676654310 00
Q ss_pred ---------------H--H--------H---HHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHH
Q 003466 717 ---------------L--W--------D---LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKL 767 (818)
Q Consensus 717 ---------------~--~--------~---~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l 767 (818)
. + . +-+.+.+.+.+.+..+. ..|.+..+--.+.. .....|+.+|
T Consensus 272 ~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~-------~d~~~f~~~L 344 (393)
T COG0436 272 TPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL-------LDSEEFAKKL 344 (393)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC-------CCHHHHHHHH
Confidence 0 0 0 11233445555455455 45666665433321 2256788888
Q ss_pred Hh-CCceEeec---C-----CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 768 RE-DGVYMRPL---G-----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 768 ~e-~Gvlv~p~---g-----~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
++ .||.+.|+ | +.+|++ +..++++++++++++.+.++..
T Consensus 345 l~~~gV~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 345 LEEAGVAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred HHhCCEEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHHHHHHhc
Confidence 75 58999983 2 356664 4566699999999999887653
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-08 Score=113.77 Aligned_cols=172 Identities=19% Similarity=0.256 Sum_probs=109.0
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.+++++||++|+..++.... +.| ..||.....|.+
T Consensus 73 ~~~Pt~~~LE~~lA~l~g~---~~~l~~~sG~~Ai~~al~al~-----~~G----------------D~Vl~~~~~Y~~- 127 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEGT---EAAYCTASGMSAISSVLLQLC-----SSG----------------GHVVASNTLYGG- 127 (418)
T ss_pred CCChhHHHHHHHHHHHhCC---CeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEcCCcHHH-
Confidence 4578899999999999873 688899999999999998652 222 256666655533
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
+...+...... . .+.. +.|.|.. +
T Consensus 128 ~~~~~~~~~~~---~---------~G~~------------------------------~~~~d~~-------d------- 151 (418)
T PLN02242 128 THALLAHFLPR---K---------CNIT------------------------------TTFVDIT-------D------- 151 (418)
T ss_pred HHHHHHHhhhh---c---------cCce------------------------------EEEcCCC-------C-------
Confidence 21111100000 0 0000 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. +.+..+|++|.. ++..|.+.+ +++|.++|++||+++|+||+++.+ .... ..+|
T Consensus 152 -~e~l~~~i~-------~~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~-~~~~----~~~g 213 (418)
T PLN02242 152 -LEAVKKAVV-------PGKTKVLYFESI-SNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPM-VLSP----ARLG 213 (418)
T ss_pred -HHHHHHhcC-------cCCCEEEEEecC-CCCCCcccC----HHHHHHHHHHhCCEEEEECCCCcc-CCCH----HHcC
Confidence 145666553 224789999986 787887664 899999999999999999999643 2211 1234
Q ss_pred CCCcEE--EecccccCCcccc-ceeecchHHHhhcc
Q 003466 680 CVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSFV 712 (818)
Q Consensus 680 v~PDiv--tlgKgLggGy~Pl-sAvl~~~~i~~~l~ 712 (818)
.|++ +++|.++|+-..+ |++++++++++.+.
T Consensus 214 --~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~ 247 (418)
T PLN02242 214 --ADVVVHSISKFISGGADIIAGAVCGPAELVNSMM 247 (418)
T ss_pred --CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHH
Confidence 4665 7999998643454 77888888766543
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.5e-08 Score=109.63 Aligned_cols=313 Identities=11% Similarity=0.037 Sum_probs=176.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc--ccccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e 475 (818)
.+||+..| ...++. .+.+.+++.+.++.- ..+....+..+....+++.+....|.. .-+ .+++++++++|..
T Consensus 31 ~~i~l~~~--~p~~~~--~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~ 106 (405)
T PRK09148 31 DIIDLGMG--NPDLPT--PQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFA 106 (405)
T ss_pred CeEEcCCC--CCCCCC--CHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHH
Confidence 67887653 222332 577888888766431 111112233456667777776543321 013 6999999999988
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.++.... ..| ..|+..+-+|.+....... .|..
T Consensus 107 ~~~~~l~-----~~g----------------d~Vl~~~P~y~~~~~~~~~-~g~~------------------------- 139 (405)
T PRK09148 107 NMAQAIT-----APG----------------DVILCPNPSYPIHAFGFIM-AGGV------------------------- 139 (405)
T ss_pred HHHHHhc-----CCC----------------CEEEEcCCCCcccHHHHHh-cCCE-------------------------
Confidence 8877651 222 3688888888774322111 1111
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+++|... + .++ .+.+++.+.. ..+.....++.-| ++-.|.
T Consensus 140 -----v~~v~~~~--------~--~~~------------------~~~l~~~~~~----~~~~~~~v~l~~P--~NPtG~ 180 (405)
T PRK09148 140 -----IRSVPAEP--------D--EEF------------------FPALERAVRH----SIPKPIALIVNYP--SNPTAY 180 (405)
T ss_pred -----EEEEeCCC--------C--CCC------------------ccCHHHHHhh----ccccceEEEEeCC--CCCCCc
Confidence 11111000 0 000 0223334432 1122233444445 677787
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcccCCCCc----EEEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PD----ivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. +.+-+++|.++|++||+++|.||++..|--.+..+. ...+.-.+| +-+|||.+| -| +-+|.+++++++++
T Consensus 181 ~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pG-lR~G~~v~~~~~i~ 258 (405)
T PRK09148 181 VA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAG-WRMGFAVGNERLIA 258 (405)
T ss_pred CC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcc-hheeeeeCCHHHHH
Confidence 76 789999999999999999999999976522222111 111111123 347999998 67 78899999998887
Q ss_pred hccCCh--------H--------HHH-----------------HHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCCC
Q 003466 710 SFVGDS--------K--------LWD-----------------LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~--------~--------~~~-----------------~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~ 755 (818)
.+.... . .+. +.+.+.+++++. .-... .|+++-+.+...-
T Consensus 259 ~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~~p~~g~f~~~~l~~~~----- 332 (405)
T PRK09148 259 ALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAGW-DIPPPAASMFAWAPIPEAF----- 332 (405)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccCCCCeeEEEEEECCCcc-----
Confidence 653210 0 110 112333444432 21222 3445555543210
Q ss_pred chHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhH
Q 003466 756 GSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 812 (818)
Q Consensus 756 ~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~ 812 (818)
+......+++.|+ ++||.+.|+ .+.+|+... .+++++++++++|.+++.+..++.
T Consensus 333 ~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~~~~~ 395 (405)
T PRK09148 333 RHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLSSADETL 395 (405)
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012356777766 789999983 257888775 578999999999999998877553
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=111.98 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=104.9
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc-EE--Eeccccc-CCcc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKLLT-GGVI 696 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv--tlgKgLg-gGy~ 696 (818)
+.+++.| +...|..+ +.+.+++|.++|++||+++|+||++.+|....... ...+-.++ ++ +++|.+| .| +
T Consensus 128 ~v~i~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~i~~~S~SK~~g~~G-~ 201 (330)
T TIGR01140 128 VLVLCNP--NNPTGRLI-PPETLLALAARLRARGGWLVVDEAFIDFTPDASLA--PQAARFPGLVVLRSLTKFFGLAG-L 201 (330)
T ss_pred EEEEeCC--CCCCCCCC-CHHHHHHHHHHhHhcCCEEEEECcccccCCccchh--hHhccCCCEEEEEecchhhcCch-h
Confidence 4556666 56667655 89999999999999999999999998774321111 11122233 33 8999998 77 7
Q ss_pred ccceeecchHHHhhccCChH------------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEE
Q 003466 697 PLAATLATNAVFDSFVGDSK------------------------------LWDLELIQQISSHRTVQRVVALGTLCAIEL 746 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~~------------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel 746 (818)
.+|++++++++++.+..... ...+.+.+.+++++.+....+.|.++-+.+
T Consensus 202 R~G~i~~~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~ 281 (330)
T TIGR01140 202 RLGFVVAHPALLARLREALGPWTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEVVGGTALFLLVRT 281 (330)
T ss_pred hhhheeCCHHHHHHHHhcCCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCeEEEEEc
Confidence 99999999998876643210 011223445566664433334455555544
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l 801 (818)
.. ...+++.|.++||++.|+ ++.+|+.... ..++ ++++++|
T Consensus 282 ~~-----------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~--~~~~-~~~~~~l 329 (330)
T TIGR01140 282 PD-----------AAALHEALARRGILIRDFDNFPGLDPRYLRFALPT--DEEN-DRLEEAL 329 (330)
T ss_pred CC-----------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecC--HHHH-HHHHHhh
Confidence 21 346889999999999983 1578887753 3344 7766655
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=107.30 Aligned_cols=305 Identities=13% Similarity=0.093 Sum_probs=169.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e~ 476 (818)
..||+..|.-. .+ . ++.+.+++.+.+... ..+....+..+....+++.+.+..+.. .-+ .+++++++++|...
T Consensus 27 ~~i~l~~g~p~--~~-~-p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~ 102 (387)
T PRK08912 27 GAINLGQGFPD--DP-G-PEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAA 102 (387)
T ss_pred CeEEccCCCCC--CC-C-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHH
Confidence 45666665432 33 3 688888888776431 112212233456667777776543311 124 79999999999988
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
++.... ..| ..|+..+-+|.+... .+...|...
T Consensus 103 ~~~~~~-----~~g----------------d~Vlv~~p~y~~~~~-~~~~~g~~~------------------------- 135 (387)
T PRK08912 103 ALLALV-----EPG----------------DEVVLFQPLYDAYLP-LIRRAGGVP------------------------- 135 (387)
T ss_pred HHHHhc-----CCC----------------CEEEEeCCCchhhHH-HHHHcCCEE-------------------------
Confidence 777541 112 257777777755322 111111110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~~g~gG~ 635 (818)
..++++. ++ +. -+ .+.+++.+. .++.+ ++..| ++-.|.
T Consensus 136 ---~~~~~~~--------------~~----~~--~~--------~~~l~~~~~--------~~~~~v~l~~p--~NPtG~ 174 (387)
T PRK08912 136 ---RLVRLEP--------------PH----WR--LP--------RAALAAAFS--------PRTKAVLLNNP--LNPAGK 174 (387)
T ss_pred ---EEEecCc--------------cc----Cc--CC--------HHHHHHHhC--------ccceEEEEeCC--CCCcCc
Confidence 0111100 00 00 00 144555553 13334 44445 677787
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc--hhcccCCC-CcEE--Eeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGCV-PDIA--CYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~--a~e~~gv~-PDiv--tlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. +.+-+++|.++|++||+++|+||++..|--.+..+ .....+.. .+++ ++||.+| .| +-+|.+++++++++
T Consensus 175 ~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~ 252 (387)
T PRK08912 175 VF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG-WKVGFVCAAPPLLR 252 (387)
T ss_pred cc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcC-ceeEEEecCHHHHH
Confidence 66 67889999999999999999999996552222111 11111221 2233 7899998 78 78999999998877
Q ss_pred hccCCh--------H--------HH-----------------HHHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCC
Q 003466 710 SFVGDS--------K--------LW-----------------DLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~--------~--------~~-----------------~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~ 755 (818)
.+.... . .+ .+.+.+.++.++ +.-.... |.++-+.+.... .
T Consensus 253 ~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~g~~~l~~~l~~~~--~-- 327 (387)
T PRK08912 253 VLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIG-FPVLPSQGTYFLTVDLAPLG--L-- 327 (387)
T ss_pred HHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEecccccC--C--
Confidence 653210 0 00 011223344443 2112222 445555554310 0
Q ss_pred chHHHHHHHHHHH-hCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLR-EDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 756 ~~~~a~~~~~~l~-e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
......+++.|+ ++||++.|+ .+.+|++... .++++++.+++|.++++
T Consensus 328 -~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~--~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 328 -AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK--RDATLDEAVERLAAARR 385 (387)
T ss_pred -CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 012456788876 579999872 2567877664 58899999999988765
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=107.24 Aligned_cols=299 Identities=12% Similarity=0.060 Sum_probs=167.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e 475 (818)
..+|+.+|. ..++ - .+.+.+++.+.+.... .+....+..+....+++.+....+.+ ..+ .+++++++++|..
T Consensus 30 ~~~~l~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~ 105 (383)
T TIGR03540 30 DVISLGIGD--PDLP-T-PKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIA 105 (383)
T ss_pred CeEEeCCCC--CCCC-C-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHH
Confidence 566766643 2233 2 5788999888765321 11111233455666777666543321 013 5888888899988
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.. -..| ..|++.+-+|.+....+.. .|..
T Consensus 106 ~~~~~~-----~~~g----------------d~vlv~~P~y~~~~~~~~~-~G~~------------------------- 138 (383)
T TIGR03540 106 HIPLAF-----VNPG----------------DIVLVPDPGYPVYRIGTLF-AGGE------------------------- 138 (383)
T ss_pred HHHHHh-----CCCC----------------CEEEEeCCCCcchHHHHHh-cCCE-------------------------
Confidence 888765 1222 3688888888764332211 1111
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCC
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGG 634 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG 634 (818)
.+.+|... +..+. .+ .+.+++.+. .++.+|++- | ++-.|
T Consensus 139 -----v~~v~~~~---------------~~g~~--~d--------~~~l~~~~~--------~~~~~v~i~~P--~NPtG 178 (383)
T TIGR03540 139 -----PYEMPLKE---------------ENGFL--PD--------FDAIPEDIA--------KKAKLMFINYP--NNPTG 178 (383)
T ss_pred -----EEEEecCc---------------ccCCc--cC--------HHHHHhhcc--------ccceEEEEeCC--CCCcC
Confidence 01111000 00000 00 134444443 244566655 5 67788
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hh-ccc---CCCCcEEEeccccc-CCccccceeecchHHH
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DLL---GCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~-e~~---gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~ 708 (818)
... +.+-+++|.++|++||+++|.||++..+-..+... .. ... +..-.+.+|||.+| .| +-+|.++++++++
T Consensus 179 ~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~i~~~~l~ 256 (383)
T TIGR03540 179 AVA-PLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTG-WRIGMAVGNADLI 256 (383)
T ss_pred ccC-CHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCcc-ceeeEEeCCHHHH
Confidence 776 89999999999999999999999997553223211 11 111 11223458999996 56 6888899999887
Q ss_pred hhccCCh--------H--------HH-------H----------HHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCC
Q 003466 709 DSFVGDS--------K--------LW-------D----------LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAG 754 (818)
Q Consensus 709 ~~l~~~~--------~--------~~-------~----------~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~ 754 (818)
+.+.... . .+ . +.+.+.|++++ +.-+.. .|.++-+.+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~l~~~----- 330 (383)
T TIGR03540 257 AGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKIG-IDVEKPKATFYVWVPVPEG----- 330 (383)
T ss_pred HHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-CEecCCCcceEEEEECCCC-----
Confidence 7553210 0 00 0 11233344443 221222 244455555322
Q ss_pred CchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 755 ~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
..+..++..|+ ++||++.|+ .+.+|+... .+++++.+.+++|.
T Consensus 331 ---~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~ 381 (383)
T TIGR03540 331 ---YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT--VPDERLEEAVARIK 381 (383)
T ss_pred ---CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec--CCHHHHHHHHHHHh
Confidence 12456888875 689999973 246888775 56778888777765
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-07 Score=105.88 Aligned_cols=305 Identities=11% Similarity=0.049 Sum_probs=167.6
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e~ 476 (818)
.++|+..|.. .++ . .+.+.+++.+.++... .+....+..+...++++.+....+-+ ..+ .+++++++++|+..
T Consensus 29 ~~i~l~~~~p--~~~-~-~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 29 NLISLTIGQP--DFP-T-PSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 4567665432 122 2 5788999998876432 11111234455666777665432211 124 79999999999998
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++... ..| ..|+.-.-+|.+..... ...|...
T Consensus 105 ~~~~l~-----~~g----------------d~Vl~~~p~y~~~~~~~-~~~g~~~------------------------- 137 (387)
T PRK07683 105 AFRTIL-----EPG----------------TEVILPAPIYPGYEPII-RLCGAKP------------------------- 137 (387)
T ss_pred HHHHhC-----CCC----------------CEEEEcCCCccchHHHH-HHcCCEE-------------------------
Confidence 887651 122 25777777777643222 1111110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
+.+|.. -++ +. -+ .+.+++.+. .++.++++.-. ++-.|..
T Consensus 138 -----~~~~~~------------~~~----~~--~~--------~~~l~~~~~--------~~~~~i~i~~p-~NPtG~~ 177 (387)
T PRK07683 138 -----VFIDTR------------STG----FR--LT--------AEALENAIT--------EKTRCVVLPYP-SNPTGVT 177 (387)
T ss_pred -----EEeecC------------ccc----CC--CC--------HHHHHHhcC--------cCceEEEEeCC-CCCCCcC
Confidence 011100 000 00 00 134555443 12344444432 6677776
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcccCCCCc-E--EEeccccc-CCccccceeecchHHHhhc
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPD-I--ACYGKLLT-GGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PD-i--vtlgKgLg-gGy~PlsAvl~~~~i~~~l 711 (818)
. +.+.+++|.++|+++|+++|+||++..+-..+.... ....+.... + .+|||.+| .| +-+|.+++++++++.+
T Consensus 178 ~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pG-lRiG~i~~~~~l~~~~ 255 (387)
T PRK07683 178 L-SKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTG-WRIGFLFAPSYLAKHI 255 (387)
T ss_pred C-CHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCcc-ceeEEEEcCHHHHHHH
Confidence 6 888999999999999999999999976622222111 111122112 2 37999998 77 7999999999887765
Q ss_pred cCC--------hH--------HHH-----------------HHHHHHHHcCCCeeEEEeee-eEEEEEEecCcccCCCch
Q 003466 712 VGD--------SK--------LWD-----------------LELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 712 ~~~--------~~--------~~~-----------------~~l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~~~~~~~ 757 (818)
... .. .+. +.+.+.+...+ +.-....| .++-+.+....
T Consensus 256 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~------- 327 (387)
T PRK07683 256 LKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISMG-LDVEKPTGAFYLFPSIGHFT------- 327 (387)
T ss_pred HHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcC-CcccCCCeeEEEEEecccCC-------
Confidence 321 00 110 01122233332 22122333 33333333210
Q ss_pred HHHHHHHHH-HHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKK-LREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 758 ~~a~~~~~~-l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.....++.. +.++||.+.|+ .+.+|+... .+++++.+++++|.+.+.+
T Consensus 328 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~--~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 328 MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA--YSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 113346655 56789999873 257777665 5788999999999887753
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.6e-08 Score=108.32 Aligned_cols=288 Identities=14% Similarity=0.098 Sum_probs=167.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.++|+..+. +.+| - +|.+.+|+.+.+.....+. .+...+|-+.+++..+-. -+.|++++++++|...++.
T Consensus 44 ~~i~l~~~~--~~~~-~-~~~~~~a~~~~~~~~~~Y~-----~~~~~~Lr~aia~~~~v~-~e~I~it~Gs~~ai~~~~~ 113 (370)
T PRK09105 44 GAVFLNANE--CPLG-P-SPAARDAAARSAALSGRYD-----LELEDDLRTLFAAQEGLP-ADHVMAYAGSSEPLNYAVL 113 (370)
T ss_pred CcEEecCCC--CCCC-C-CHHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHhCcC-hhhEEEcCChHHHHHHHHH
Confidence 566665532 2344 2 6899999988775433221 122556777777766533 3689999999999998887
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... ..| .+|+..+-+|.+.... ....|.+.
T Consensus 114 ~l~-----~~g----------------d~Vli~~P~y~~~~~~-~~~~g~~~---------------------------- 143 (370)
T PRK09105 114 AFT-----SPT----------------AGLVTADPTYEAGWRA-ADAQGAPV---------------------------- 143 (370)
T ss_pred HHc-----CCC----------------CEEEEeCCChHHHHHH-HHHcCCeE----------------------------
Confidence 551 122 3688887777654321 11111110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
+.+|... + |. .+ .+.+++.. +.....++..| ++..|.+. +
T Consensus 144 --~~v~~~~--------~--~~---------~d--------~~~l~~~~--------~~~~~v~l~nP--~NPTG~~~-~ 183 (370)
T PRK09105 144 --AKVPLRA--------D--GA---------HD--------VKAMLAAD--------PNAGLIYICNP--NNPTGTVT-P 183 (370)
T ss_pred --EEecCCC--------C--CC---------CC--------HHHHHhcC--------CCCCEEEEeCC--CCCCCcCc-C
Confidence 1111000 0 00 00 12232221 12223555666 67788876 6
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccccceeecchHHHhhccCCh
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~ 715 (818)
.+.++++.+.|+ +|+++|+||++..|+.. . ...+..+..++++ +|||.+| .| +.+|.+++++++++.+....
T Consensus 184 ~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~-~-s~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~~~~ 259 (370)
T PRK09105 184 RADIEWLLANKP-AGSVLLVDEAYIHFSDA-P-SVVDLVAQRKDLIVLRTFSKLYGMAG-MRLGLAAARPDLLAKLARFG 259 (370)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHHhccC-c-chHHHHhhCCCEEEEecccHhhcCCc-cceeeeecCHHHHHHHHhcC
Confidence 777788877764 59999999999767431 1 1122222245544 7899997 67 78999999998887654321
Q ss_pred H-------------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHH
Q 003466 716 K-------------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKK 766 (818)
Q Consensus 716 ~-------------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~ 766 (818)
. .+ .+.+.+.++.++. .-....|.++.+.+..+ ...+++.
T Consensus 260 ~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~~~~~~f~~~~~~~~----------~~~l~~~ 328 (370)
T PRK09105 260 HNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKKGY-KCTPSQANCFMVDVKRP----------AKAVADA 328 (370)
T ss_pred CCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CcCCCCCcEEEEeCCCC----------HHHHHHH
Confidence 0 00 0122334444432 22233455554544311 4578899
Q ss_pred HHhCCceEee----cCCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 767 LREDGVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 767 l~e~Gvlv~p----~g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
|.++||+++. ..+.+|++.. +++++++++++|++.+
T Consensus 329 L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 329 MAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred HHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 9999999952 1367888864 5788999998887764
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-07 Score=103.92 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=104.4
Q ss_pred cEEEEEE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--Eeccccc-CC
Q 003466 619 CIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GG 694 (818)
Q Consensus 619 ~iAAVIv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLg-gG 694 (818)
++.+|++ .| ++-.|.. .+.+.+++|.++|++||+++|+||++..|-..+..+.........+++ ++||.+| .|
T Consensus 142 ~~k~v~l~~p--~NPTG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 218 (356)
T PRK08056 142 DLDCLFLCTP--NNPTGLL-PERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPG 218 (356)
T ss_pred CCCEEEEeCC--cCCCCCC-CCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcc
Confidence 3445555 45 6778875 489999999999999999999999998773333211111111112233 7999999 78
Q ss_pred ccccceeecc-hHHHhhccCC----h--H--------HH-----H-----------HHHHHHHHcCCCeeEEEeeeeEEE
Q 003466 695 VIPLAATLAT-NAVFDSFVGD----S--K--------LW-----D-----------LELIQQISSHRTVQRVVALGTLCA 743 (818)
Q Consensus 695 y~PlsAvl~~-~~i~~~l~~~----~--~--------~~-----~-----------~~l~~~l~~~~~v~~vrg~Gl~~~ 743 (818)
+.+|.++++ +++++.+... . . .+ . +.+.+.++.++.+.-....|.++-
T Consensus 219 -~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~ 297 (356)
T PRK08056 219 -LRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLTVWPGRANYLF 297 (356)
T ss_pred -hhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCCCcEEE
Confidence 799999874 5665544321 0 0 00 0 112333444443322222344443
Q ss_pred EEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 744 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 744 iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+..+ ...+++.|.++||+++++ ++.+|++.. ++++.+.++++|++.+
T Consensus 298 ~~~~~~----------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 298 LRCERP----------DIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR---SAAENERLLAALRNVL 353 (356)
T ss_pred EEcCCC----------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc---CHHHHHHHHHHHHHHH
Confidence 433211 346888999999999873 146888753 6788899998887764
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-08 Score=114.14 Aligned_cols=225 Identities=17% Similarity=0.119 Sum_probs=135.9
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.+++++||++|+..++.... +.| ..||+.+..||+.
T Consensus 47 ~gnPt~~~lE~~lA~l~g~---~~~~~~~sG~~Ai~~al~all-----~~G----------------D~Vl~~~~~y~~t 102 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEGG---AGCYLYPSGLAAVTNSILAFV-----KAG----------------DHVLMVDSAYEPT 102 (377)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEECcHHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcHHH
Confidence 3467788999999998873 688899999999999997541 222 3688888888874
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
....-... + + .+.. +.+.|. .+
T Consensus 103 ~~~~~~~~--~--~----------~gi~------------------------------v~~~d~-------~~------- 124 (377)
T TIGR01324 103 RYFCDIVL--K--R----------MGVD------------------------------ITYYDP-------LI------- 124 (377)
T ss_pred HHHHHHHH--H--h----------cCcE------------------------------EEEECC-------CC-------
Confidence 31100000 0 0 0000 001111 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. .++.+|++|.+ .+..|.+. .+++|.++|++||+++|+||++. +|-.+.. ..+
T Consensus 125 -~e~l~~~i~--------~~tklV~lesp-~Np~g~~~----dl~~I~~la~~~g~~livD~t~a-~g~~~~p---l~~- 185 (377)
T TIGR01324 125 -GEDIATLIQ--------PNTKVLFLEAP-SSITFEIQ----DIPAIAKAARNPGIVIMIDNTWA-AGLLFKP---LEH- 185 (377)
T ss_pred -HHHHHHhcC--------CCceEEEEECC-CCCCCcHH----HHHHHHHHHHHcCCEEEEECCCc-cccccCc---ccc-
Confidence 034555553 35679999986 66666554 49999999999999999999994 4444332 123
Q ss_pred CCCcEEEe--cccccCCc-cccceeecchHHHhhccCChH-----------------------HHH------HHHHHHHH
Q 003466 680 CVPDIACY--GKLLTGGV-IPLAATLATNAVFDSFVGDSK-----------------------LWD------LELIQQIS 727 (818)
Q Consensus 680 v~PDivtl--gKgLggGy-~PlsAvl~~~~i~~~l~~~~~-----------------------~~~------~~l~~~l~ 727 (818)
-.|+++. .|.++|-- .=.|+++++++.++.+..... .++ ..+.+.|+
T Consensus 186 -gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~ 264 (377)
T TIGR01324 186 -GVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLGVRLKQHQESSLAIAKWLS 264 (377)
T ss_pred -CceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4688754 89998520 224567777776654431100 111 12345567
Q ss_pred cCCCeeEEE------------------eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCc
Q 003466 728 SHRTVQRVV------------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV 772 (818)
Q Consensus 728 ~~~~v~~vr------------------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv 772 (818)
++|.|..|. |.|.|+.|++.... .+.+..|.+.|.-.++
T Consensus 265 ~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~------~~~~~~~~~~l~~~~~ 321 (377)
T TIGR01324 265 EQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT------QKQVHAFLDHLQLFGL 321 (377)
T ss_pred hCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC------HHHHHHHHHhCCcceE
Confidence 777665542 66889999996421 1345667776654333
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.5e-08 Score=106.96 Aligned_cols=286 Identities=12% Similarity=0.054 Sum_probs=160.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCC-CCcEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~-l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
.|.+.+|+.+.. ++.. ....+...++.++|+++++.+. .+.++++.||++|++.++.... ..
T Consensus 17 ~~~~~~a~~~~~---~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~-----~~------- 79 (368)
T PRK13479 17 SRTVREAMLRDW---GSWD--DDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV-----PR------- 79 (368)
T ss_pred CHHHHHHhCCCC---CCCC--hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc-----CC-------
Confidence 566666666543 2211 0123567788888888876431 1347799999999999998761 11
Q ss_pred CCCccccccceEEEEEcCCCCCCcc-ccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~-~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
..++++...+|.|... ......|.+ ...++.+...
T Consensus 80 ---------~~~vlv~~~~~~~~~~~~~~~~~g~~----------------------------~~~i~~~~~~------- 115 (368)
T PRK13479 80 ---------DGKVLVPDNGAYGARIAQIAEYLGIA----------------------------HVVLDTGEDE------- 115 (368)
T ss_pred ---------CCeEEEEeCCchHHHHHHHHHHcCCc----------------------------EEEEECCCCC-------
Confidence 2356666666665421 111111111 0111111000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+.+ + .++..|.+--+ .+..|...+ +++|.++|+++|+
T Consensus 116 ----~~d------------------~~~l~~~l~~-----~-~~~~~v~~~~~-~~~tG~~~~----~~~i~~l~~~~~~ 162 (368)
T PRK13479 116 ----PPD------------------AAEVEAALAA-----D-PRITHVALVHC-ETTTGILNP----LDEIAAVAKRHGK 162 (368)
T ss_pred ----CCC------------------HHHHHHHHHh-----C-CCCcEEEEEcc-cCccccccC----HHHHHHHHHHcCC
Confidence 011 1456666652 1 23333333332 455777776 8999999999999
Q ss_pred cEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccCCh------------------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDS------------------ 715 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~~------------------ 715 (818)
++|+|.++ +||... ..... ..+|++ ++.|.+.|. .-+|.+++++++.+.+....
T Consensus 163 ~livDa~~-~~g~~~--~~~~~--~~~d~~v~s~~K~l~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T PRK13479 163 RLIVDAMS-SFGAIP--IDIAE--LGIDALISSANKCIEGV-PGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTG 236 (368)
T ss_pred EEEEEccc-ccCCcc--ccccc--cCceEEEecCccccccC-CCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccC
Confidence 99999887 665322 22222 246765 678988653 22577889888765432210
Q ss_pred --------------H----HH-H---------------HHHHHHHHcCCCee--E-EEeeeeEEEEEEecCcccCCCchH
Q 003466 716 --------------K----LW-D---------------LELIQQISSHRTVQ--R-VVALGTLCAIELQAAGCNAGYGSL 758 (818)
Q Consensus 716 --------------~----~~-~---------------~~l~~~l~~~~~v~--~-vrg~Gl~~~iel~~~~~~~~~~~~ 758 (818)
. .+ . +.+.+.+++++... . ......+..+.+.... ..
T Consensus 237 ~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~ 310 (368)
T PRK13479 237 QWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADP------AY 310 (368)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCC------Cc
Confidence 0 01 0 11223333333210 0 0011122333322110 01
Q ss_pred HHHHHHHHHHhCCceEeec----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 759 ~a~~~~~~l~e~Gvlv~p~----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
....+.+.|.++||.++++ .+.+|+......+++|+++++++|+++++++.
T Consensus 311 ~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 311 DFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred CHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 2456888999999999874 25789987556789999999999999987653
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-07 Score=111.42 Aligned_cols=314 Identities=11% Similarity=0.071 Sum_probs=173.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~AL 478 (818)
..|++..|.- +.+|+...+++++++.+++.....+....+..+....+++.+...-+.+ ..+.+++++++++|...++
T Consensus 147 ~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~ 225 (517)
T PRK13355 147 HILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSM 225 (517)
T ss_pred CeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHH
Confidence 5566655432 2456643678999999887654333322334556667777765432211 1357999999999998888
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
+.. -..| ..|+..+-+|......+. ..|...
T Consensus 226 ~~l-----~~~G----------------d~Vli~~P~y~~y~~~~~-~~g~~~--------------------------- 256 (517)
T PRK13355 226 SAL-----LDDG----------------DEVLIPSPDYPLWTACVN-LAGGTA--------------------------- 256 (517)
T ss_pred HHh-----CCCC----------------CEEEEcCCCCcCHHHHHH-HCCCEE---------------------------
Confidence 765 1222 368888888876543222 212110
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
+.+|- +.+..|. .| .+.+++.+. +..-+.+|+-| ++-.|.+.
T Consensus 257 ---v~~~~---------------~~~~~~~--~d--------~~~l~~~~~-------~~~k~i~i~nP--~NPTG~v~- 298 (517)
T PRK13355 257 ---VHYRC---------------DEQSEWY--PD--------IDDIRSKIT-------SRTKAIVIINP--NNPTGALY- 298 (517)
T ss_pred ---EEeec---------------CcccCCC--CC--------HHHHHHhcC-------cCceEEEEECC--CCCCCcCc-
Confidence 00000 0000000 00 144555553 22334556677 67778776
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcE--E---Eeccccc-CCccccceeecc--hH----
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI--A---CYGKLLT-GGVIPLAATLAT--NA---- 706 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi--v---tlgKgLg-gGy~PlsAvl~~--~~---- 706 (818)
+.+.+++|.++|++||+++|.||++..|--.|..+. ......||. + +|||..+ .| +-+|.++++ ++
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~-s~~~~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~~ 376 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT-SIASLAPDLFCVTFSGLSKSHMIAG-YRIGWMILSGNKRIAKD 376 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcc-cHHHhCCCCeEEEEecchhhccCcc-cceEEEEeeCchhhHHH
Confidence 799999999999999999999999976622232111 001123553 2 4799864 45 678888743 33
Q ss_pred HHhhc---cCC----hH--------HH----------H---------HHHHHHHHcCCCeeEEEeeeeEEEE-EEecCcc
Q 003466 707 VFDSF---VGD----SK--------LW----------D---------LELIQQISSHRTVQRVVALGTLCAI-ELQAAGC 751 (818)
Q Consensus 707 i~~~l---~~~----~~--------~~----------~---------~~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~~~ 751 (818)
+++.+ ... .. .+ . +.+.+.|++.+.+.-....|.++.+ .+.....
T Consensus 377 ~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~~~ 456 (517)
T PRK13355 377 YIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKF 456 (517)
T ss_pred HHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCeeeEEEeecCcccC
Confidence 22211 000 00 00 0 1122334444444434455655544 4432100
Q ss_pred cCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 752 NAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 752 ~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.. . .....+.+.|.++||.+.|+ .+.+|++. ..++++|++.+++|.+.+...
T Consensus 457 ~~-~--~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~--~~~~~~l~~a~~rl~~~~~~~ 515 (517)
T PRK13355 457 NI-H--DDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY--LPRLEDLEDAMDRLADFFSYY 515 (517)
T ss_pred CC-C--CHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe--CCCHHHHHHHHHHHHHHHHHh
Confidence 00 0 01222345567889999873 25677776 467899999999999988654
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-07 Score=104.72 Aligned_cols=301 Identities=13% Similarity=0.097 Sum_probs=170.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCCC--CCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~--l~~v~f~~SGseA~e~ 476 (818)
.+||+..|.. .++ - .+.+.+++.+.+.+. ..+....+..+...++++.+.+..|... -+.++.+++|++|...
T Consensus 30 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~ 105 (384)
T PRK12414 30 DALNLSQGAP--NFA-P-DPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA 105 (384)
T ss_pred CeEEcCCCCC--CCC-C-CHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence 5677776543 344 2 688999988766542 1111123445677888888888766321 1469999999999998
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++... ..| .+|++.+-+|.+.. ..+...|..
T Consensus 106 ~~~~l~-----~~g----------------d~Vlv~~p~y~~~~-~~~~~~g~~-------------------------- 137 (384)
T PRK12414 106 AISALV-----HPG----------------DEVIYFEPSFDSYA-PIVRLQGAT-------------------------- 137 (384)
T ss_pred HHHHhc-----CCC----------------CEEEEeCCCccchH-HHHHHcCCE--------------------------
Confidence 887551 222 36888887776532 111111111
Q ss_pred CcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+.+|-.. ++ + -| .+.+++.+. .++.+|++... +.-.|.
T Consensus 138 ----~~~v~~~~-------~~--~~~d------------------~~~l~~~l~--------~~~~~v~i~~p-~NPTG~ 177 (384)
T PRK12414 138 ----PVAIKLSP-------ED--FRVN------------------WDEVAAAIT--------PRTRMIIVNTP-HNPSAT 177 (384)
T ss_pred ----EEEEecCc-------cc--cccC------------------HHHHHhhcC--------cccEEEEEcCC-CCCCCc
Confidence 01111000 00 0 01 144555553 24555665543 677787
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-h-hcccCCCCcE---EEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-T-ADLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a-~e~~gv~PDi---vtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. +++.+++|.++|++||+++|+||++.-|--.|... . ....+....+ -+|||.+| .| +-+|.+++++++++
T Consensus 178 ~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~ 255 (384)
T PRK12414 178 VF-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTG-WRVGYCLAPAELMD 255 (384)
T ss_pred CC-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCcc-ceEEEEecCHHHHH
Confidence 66 68889999999999999999999996542123211 1 1111222122 27999997 67 78899999998876
Q ss_pred hccCCh--------H--------HH---------H-------HHHHHHHHcCCCeeEEEeee-eEEEEEEecCcccCCCc
Q 003466 710 SFVGDS--------K--------LW---------D-------LELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYG 756 (818)
Q Consensus 710 ~l~~~~--------~--------~~---------~-------~~l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~~~~~~ 756 (818)
.+.... . .+ . +.+.+.+++++ +.-....| +++-+.+..-. .
T Consensus 256 ~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~gg~~~~~~~~~~~-----~ 329 (384)
T PRK12414 256 EIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGSR-FELLPSEGSFFMLARFRHFS-----D 329 (384)
T ss_pred HHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhCC-CeecCCCcceEEEEcccccC-----C
Confidence 553211 0 01 0 11223344443 22122334 34333443210 0
Q ss_pred hHHHHHHH-HHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 757 SLYAASLL-KKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 757 ~~~a~~~~-~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
.....++ +.|.++||.+.|+ .+.+|++.. .+++++++.+++|.+
T Consensus 330 -~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 330 -ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS 383 (384)
T ss_pred -CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence 0123444 5566889999872 246888776 368899999988853
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-07 Score=103.33 Aligned_cols=173 Identities=15% Similarity=0.118 Sum_probs=108.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHh------cCCcEEEeecccCcccCCccch--hcccCCCCcEE--Eec
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVETT--ADLLGCVPDIA--CYG 688 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~------~gilLI~DEV~TGfGRtG~~~a--~e~~gv~PDiv--tlg 688 (818)
++.+|++-.. +.-.|... |.+.+++|.++|++ ||+++|.||++..|-..|.... ...++ -.++ +||
T Consensus 168 ~~~~v~~~~p-~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~i~~~S~S 243 (394)
T PRK06836 168 KTKAVIINSP-NNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYD--NSIVVYSFS 243 (394)
T ss_pred CceEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccC--cEEEEecch
Confidence 4556665553 67777776 78889999999999 9999999999977632232111 11111 1233 599
Q ss_pred cccc-CCccccceeecchHHHhh------cc---------CChH--------HH---------H---HHHHHHHHcCCCe
Q 003466 689 KLLT-GGVIPLAATLATNAVFDS------FV---------GDSK--------LW---------D---LELIQQISSHRTV 732 (818)
Q Consensus 689 KgLg-gGy~PlsAvl~~~~i~~~------l~---------~~~~--------~~---------~---~~l~~~l~~~~~v 732 (818)
|.+| .| +-+|.+++++++.+. +. .... .+ . +.+.+.|+.++.
T Consensus 244 K~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~r~~l~~~L~~~g~- 321 (394)
T PRK06836 244 KSLSLPG-ERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATVDVSIYKRNRDLLYDGLTELGF- 321 (394)
T ss_pred hhccCcc-eeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHhCCC-
Confidence 9998 67 688999998765321 10 1111 11 0 112334444432
Q ss_pred eEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 733 QRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 733 ~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.-.... |+.+-+.+... .+..+++.|.++||.+.|+ ++.+|+... .+++++++.+++|.++++
T Consensus 322 ~~~~~~gg~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~ 390 (394)
T PRK06836 322 ECVKPQGAFYLFPKSPEE---------DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAFEKLAK 390 (394)
T ss_pred EeecCCceEEEEEeCCCC---------CHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 212222 44443433211 1445778889999999985 367888775 589999999999999887
Q ss_pred HH
Q 003466 807 EF 808 (818)
Q Consensus 807 ~l 808 (818)
+.
T Consensus 391 ~~ 392 (394)
T PRK06836 391 EY 392 (394)
T ss_pred Hh
Confidence 64
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-07 Score=107.06 Aligned_cols=190 Identities=9% Similarity=0.032 Sum_probs=117.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv 680 (818)
+.+++.++. ...++.+|++... ++..|... +.+-+++|.++|++||+++|.||++..+--.|.... ...+.-
T Consensus 152 ~~l~~~l~~-----~~~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~ 224 (395)
T PRK08175 152 NELERAIRE-----SYPKPKMMILGFP-SNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG 224 (395)
T ss_pred HHHHHHHhh-----ccCCceEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC
Confidence 456666652 2235667776632 67777766 888899999999999999999999976522222111 101110
Q ss_pred CCc----EEEeccccc-CCccccceeecchHHHhhccCCh--------H--------HH----------H-------HHH
Q 003466 681 VPD----IACYGKLLT-GGVIPLAATLATNAVFDSFVGDS--------K--------LW----------D-------LEL 722 (818)
Q Consensus 681 ~PD----ivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~--------~--------~~----------~-------~~l 722 (818)
.+| +.+|||.+| .| +-+|.+++++++++.+.... . .+ . +.+
T Consensus 225 ~~~~~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 303 (395)
T PRK08175 225 AKDVAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVL 303 (395)
T ss_pred cccCEEEEeeccccccCcc-hhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 123 247999996 56 67888999998887653210 0 00 0 112
Q ss_pred HHHHHcCCCeeEE-EeeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHH
Q 003466 723 IQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEV 793 (818)
Q Consensus 723 ~~~l~~~~~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~ed 793 (818)
.+.++..+. .-. -..|.++-+++.... ....+..++.+|+ ++||++.|+ .+.+|+... .+++.
T Consensus 304 ~~~L~~~~~-~~~~p~~g~~i~i~l~~~~-----~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~--~~~~~ 375 (395)
T PRK08175 304 VKGLHEAGW-MVEMPKASMYVWAKIPEPY-----AAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI--ENRDR 375 (395)
T ss_pred HHHHHHcCC-cccCCCEEEEEEEECCccc-----CCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC--CCHHH
Confidence 333444432 212 124666667665331 0011456777766 689999984 247888764 57889
Q ss_pred HHHHHHHHHHHHHH
Q 003466 794 CSQLLLKLYQRLEE 807 (818)
Q Consensus 794 Id~~~~~l~~~l~~ 807 (818)
+.+++++|.+.+.+
T Consensus 376 ~~~al~~l~~~l~~ 389 (395)
T PRK08175 376 IRQAIRGIKAMFRA 389 (395)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888764
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-07 Score=104.09 Aligned_cols=315 Identities=11% Similarity=0.061 Sum_probs=177.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc--ccccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e 475 (818)
.++|+..|.. -+.. .+.+.+++.+.+... ..+....+..+....+|+.+.+..+.. ..+ .+++++++.+|..
T Consensus 34 ~~~~l~~g~p---~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~ 109 (403)
T PRK08636 34 DIIDFSMGNP---DGPT-PQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYV 109 (403)
T ss_pred CEEEcCCcCC---CCCC-CHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHH
Confidence 6777766422 2323 566778777765431 111112334456777888886643321 124 6999999999988
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.++++. ...| ..|++-+-+|.+.... ....|..
T Consensus 110 ~~~~~l-----~~~g----------------d~Vlv~~P~y~~~~~~-~~~~g~~------------------------- 142 (403)
T PRK08636 110 HLVQAI-----TNPG----------------DVAIVPDPAYPIHSQA-FILAGGN------------------------- 142 (403)
T ss_pred HHHHHh-----CCCC----------------CEEEEcCCCCcchHHH-HHhcCCE-------------------------
Confidence 888865 1222 3688888888764322 1222211
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCC
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGG 634 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG 634 (818)
.+++|-.. ++ .+. -|.+. ..+.+++.++. +..++.++++- | +.-.|
T Consensus 143 -----~~~v~~~~------------~~---~~~--~d~~~----l~~~l~~~~~~-----~~~~~~~i~~~~P--~NPTG 189 (403)
T PRK08636 143 -----VHKMPLEY------------NE---DFE--LDEDQ----FFENLEKALRE-----SSPKPKYVVVNFP--HNPTT 189 (403)
T ss_pred -----EEEEeccc------------cc---cCc--cChhh----hhhHHHHHHhh-----ccCCceEEEEeCC--CCCCC
Confidence 01111000 00 000 00001 12445666652 23345566655 5 67778
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCcE----EEeccccc-CCccccceeecchHHH
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDI----ACYGKLLT-GGVIPLAATLATNAVF 708 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDi----vtlgKgLg-gGy~PlsAvl~~~~i~ 708 (818)
.+. +.+-+++|.++|++|++++|.||++..|--.+... ....+.-.+|. .+|||.+| .| +-+|.++++++++
T Consensus 190 ~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li 267 (403)
T PRK08636 190 ATV-EKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLV 267 (403)
T ss_pred ccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCcc-ceeeeeeCCHHHH
Confidence 777 78889999999999999999999997652122211 11111112332 35899996 67 7999999999987
Q ss_pred hhccCCh--------H--------HH----------H-------HHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCC
Q 003466 709 DSFVGDS--------K--------LW----------D-------LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAG 754 (818)
Q Consensus 709 ~~l~~~~--------~--------~~----------~-------~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~ 754 (818)
+.+.... . .+ . +.+.+.++.++ +.-.. ..|+++-+.+....
T Consensus 268 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~g~~~~~~l~~~~---- 342 (403)
T PRK08636 268 GALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANAG-WELQKPRASMFVWAKIPEPA---- 342 (403)
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCcceEEEEECCCcc----
Confidence 7543210 0 00 0 11223344433 22222 24555555553210
Q ss_pred CchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 755 ~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.......++..++ ++||.+.|+ .+.+|+... .+++++++.+++|.++++..
T Consensus 343 -~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~~ 401 (403)
T PRK08636 343 -RHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKEL 401 (403)
T ss_pred -CCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 0011456776655 689999873 256888774 57899999999999888653
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-07 Score=103.95 Aligned_cols=309 Identities=11% Similarity=0.019 Sum_probs=163.6
Q ss_pred ceeeccccccc-ccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWT-QGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~-~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ 476 (818)
.+||+..|.-. ..++ - ++.+.+++.+.+.... .+....+..+....+++.+....+.+ .-+.+++++++++|+..
T Consensus 31 ~~i~l~~g~p~~~~~~-p-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 108 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQ-P-PEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQL 108 (398)
T ss_pred CeEEEeCCCCCcCCCC-C-CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 56666655422 1233 2 6889999988775421 11112233444555555554432311 12579999999999998
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
++... -..| ..|++.+-+|.+....+.. .|..
T Consensus 109 ~~~~~-----~~~g----------------d~Vl~~~p~y~~~~~~~~~-~g~~-------------------------- 140 (398)
T PRK08363 109 IFGAL-----LDPG----------------DEILIPGPSYPPYTGLVKF-YGGV-------------------------- 140 (398)
T ss_pred HHHHh-----CCCC----------------CEEEEcCCCCcchHHHHHH-cCCE--------------------------
Confidence 88765 1222 2577777666654322111 1110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI-vEPV~~g~gG~ 635 (818)
.+.+|... .+ .+. + + .+.+++.+. .++.+|+ +.| ++-.|.
T Consensus 141 ----~v~~~~~~-------~~-~~~-~--------d--------~~~l~~~~~--------~~~~~v~l~~p--~NPtG~ 181 (398)
T PRK08363 141 ----PVEYRTIE-------EE-GWQ-P--------D--------IDDIRKKIT--------EKTKAIAVINP--NNPTGA 181 (398)
T ss_pred ----EEEecccc-------cc-CCc-C--------C--------HHHHHhhCC--------cceEEEEEECC--CCCCCc
Confidence 00110000 00 000 0 0 134554443 1334444 445 666777
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcE---EEecccc-cCCccccceeec--chHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLL-TGGVIPLAATLA--TNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi---vtlgKgL-ggGy~PlsAvl~--~~~i~~ 709 (818)
.. +.+-+++|.++|++||+++|.||++..|--.+..-....+.-...+ -+|||.. ..| +-+|.+++ ++++++
T Consensus 182 ~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~ 259 (398)
T PRK08363 182 LY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATG-WRLGYIYFVDPEGKLA 259 (398)
T ss_pred Cc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCcc-ceEEEEEEeCcHHHHH
Confidence 66 7888999999999999999999998765222322111111111223 3799995 456 68888886 544332
Q ss_pred hcc-----------CChH--------HHH-----------------HHHHHHHHcCCCeeEEEeeeeEEEE-EEecCccc
Q 003466 710 SFV-----------GDSK--------LWD-----------------LELIQQISSHRTVQRVVALGTLCAI-ELQAAGCN 752 (818)
Q Consensus 710 ~l~-----------~~~~--------~~~-----------------~~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~~~~ 752 (818)
.+. ..+. .+. +.+.+.++.++.+.-....|.++.+ .+....
T Consensus 260 ~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~~-- 337 (398)
T PRK08363 260 EVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGP-- 337 (398)
T ss_pred HHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEEEEEEeccCC--
Confidence 211 0110 010 1133445555443322344554444 443210
Q ss_pred CCCchHHHHHH-HHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 753 AGYGSLYAASL-LKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 753 ~~~~~~~a~~~-~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
. .....+ .+.|.++||.+.|+ .+.+|++.. .+++++++.+++|.+.+.+
T Consensus 338 -~---~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 338 -W---KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL--PPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred -C---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 0 012234 45567899999873 246787763 5689999999999988765
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-07 Score=105.22 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=104.0
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccCCCCc---EEEeccccc-CC
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPD---IACYGKLLT-GG 694 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PD---ivtlgKgLg-gG 694 (818)
+.+|++..- ++-.|.+. +.+.+++|.++|++||+++|.||++..|--.+..-.. ...+..+. +.+|||.++ .|
T Consensus 163 ~~~v~l~~p-~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G 240 (384)
T PRK06348 163 TKAIILNSP-NNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTG 240 (384)
T ss_pred ccEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCcc
Confidence 344444432 67778766 7899999999999999999999999876322221111 11122222 237999998 67
Q ss_pred ccccceeecchHHHhhccCCh--------H--------HH----------H-------HHHHHHHHcCCCeeEEEee-ee
Q 003466 695 VIPLAATLATNAVFDSFVGDS--------K--------LW----------D-------LELIQQISSHRTVQRVVAL-GT 740 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~--------~--------~~----------~-------~~l~~~l~~~~~v~~vrg~-Gl 740 (818)
+-+|.+++++++++.+.... . .+ . +.+.+.++..+.+.-.... |+
T Consensus 241 -lRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~ 319 (384)
T PRK06348 241 -WRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSI 319 (384)
T ss_pred -ccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeE
Confidence 79999999998876543210 0 00 0 0122333333332212232 44
Q ss_pred EEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 741 LCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 741 ~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
++-+.+.... .....+++.|+ +.||.+.|+ .+.+|++.. .+++++++.+++|.+
T Consensus 320 ~~~~~~~~~~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~ 381 (384)
T PRK06348 320 YAFINIKKTG-------LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT--VGIEVLEEAFNRIEK 381 (384)
T ss_pred EEEEecccCC-------CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec--CCHHHHHHHHHHHHh
Confidence 4444543211 12456788876 569999872 257888864 578899999888754
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-07 Score=105.16 Aligned_cols=169 Identities=12% Similarity=0.026 Sum_probs=105.4
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcc--cCCCCc----EEEeccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL--LGCVPD----IACYGKL 690 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~--~gv~PD----ivtlgKg 690 (818)
.++.+|++... ++..|.+. +.+-+++|.++|++||+++|.||++..|.-.|.... ... .+...+ +-+|||.
T Consensus 147 ~~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 224 (364)
T PRK07865 147 QRPALIWLNSP-SNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQ 224 (364)
T ss_pred ccceEEEEcCC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhc
Confidence 35567777764 78888777 688899999999999999999999986643333211 111 011112 2379999
Q ss_pred cc-CCccccceeecchHHHhhccCCh--------H--------------HH----------HHHHHHHHHcCCCeeEEEe
Q 003466 691 LT-GGVIPLAATLATNAVFDSFVGDS--------K--------------LW----------DLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 691 Lg-gGy~PlsAvl~~~~i~~~l~~~~--------~--------------~~----------~~~l~~~l~~~~~v~~vrg 737 (818)
++ .| +-+|.+++++++++.+.... . .+ .+.+.+.++.++. .-...
T Consensus 225 ~~~~G-lRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~ 302 (364)
T PRK07865 225 SNLAG-YRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAAGF-RVDHS 302 (364)
T ss_pred cCCCc-eeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCC-cccCC
Confidence 85 45 67888999998877653210 0 00 0112334444432 11123
Q ss_pred e-eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 738 L-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 738 ~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
. |+++-+.+..+ +..+++.|.++||++.|+ .+.+|+.... +++++++++++|.
T Consensus 303 ~~~~~~~~~~~~~----------~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~~~~~~l~ 363 (364)
T PRK07865 303 EAGLYLWATRGED----------CWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA--TDERIAAAVERLA 363 (364)
T ss_pred CccEEEEEeCCCC----------HHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC--CHHHHHHHHHHhh
Confidence 3 33333333211 345778899999999872 2568887654 5899999998874
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-07 Score=106.29 Aligned_cols=170 Identities=11% Similarity=0.039 Sum_probs=103.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc----chhcc-cCCCCcEEEeccccc-
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADL-LGCVPDIACYGKLLT- 692 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~----~a~e~-~gv~PDivtlgKgLg- 692 (818)
++.+|++..- ++-.|.+. +.+-+++|.++|++||+++|+||++..|--.|.. ..... .+..-.+.+|||.+|
T Consensus 166 ~~~~v~l~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 243 (385)
T PRK09276 166 KAKLMFINYP-NNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNM 243 (385)
T ss_pred cceEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCC
Confidence 4456666632 67778766 8889999999999999999999999766322221 11111 122223458999996
Q ss_pred CCccccceeecchHHHhhccCCh---------H-------HH-----------------HHHHHHHHHcCCCeeEEEee-
Q 003466 693 GGVIPLAATLATNAVFDSFVGDS---------K-------LW-----------------DLELIQQISSHRTVQRVVAL- 738 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~---------~-------~~-----------------~~~l~~~l~~~~~v~~vrg~- 738 (818)
.| +-+|.+++++++++.+.... . .+ .+.+.+.++.++ +.-....
T Consensus 244 ~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~ 321 (385)
T PRK09276 244 TG-WRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKLG-LEVEPPKA 321 (385)
T ss_pred cc-hhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCc
Confidence 56 67888999998877653210 0 00 011233344443 2212222
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
|.++-+.+... ..+..+++.|+ ++||++.|+ .+.+|+... .+++++.+++++|.
T Consensus 322 ~~~~~v~~~~~--------~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~ 383 (385)
T PRK09276 322 TFYVWAPVPKG--------YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT--VPDERIEEAVERIK 383 (385)
T ss_pred ceEEEEECCCC--------CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--CCHHHHHHHHHHHh
Confidence 44445555322 12456788877 579999984 257888765 46778888877764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-07 Score=104.66 Aligned_cols=314 Identities=12% Similarity=0.026 Sum_probs=172.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
..+|+..|.. .++ - +|.+.+++.+.+++.. .+....+..+....+++.+.+..+.. ..+.+++++++++|+..+
T Consensus 34 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (402)
T PRK06107 34 SIVDLTVGEP--DFD-T-PDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLA 109 (402)
T ss_pred CEEEcCCCCC--CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHH
Confidence 5566655432 222 2 6889999998876421 12222344566778888887765431 125799998899999999
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.. -..| ..|+..+.+|.+.. ..+...+...
T Consensus 110 ~~~~-----~~~g----------------d~vl~~~p~y~~y~-~~~~~~~~~~-------------------------- 141 (402)
T PRK06107 110 LMAT-----LEAG----------------DEVIIPAPYWVSYP-DMVLANDGTP-------------------------- 141 (402)
T ss_pred HHHh-----cCCC----------------CEEEEecCCCcCHH-HHHHHcCCEE--------------------------
Confidence 8743 1112 25666666665532 2121111100
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCcc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMH 636 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG~~ 636 (818)
..++.+... .|+ + + .+.+++.+. .++.+|++. | ++-.|..
T Consensus 142 --~~v~~~~~~----------~~~-~--------~--------~~~l~~~~~--------~~~~~v~l~~p--~NPtG~~ 182 (402)
T PRK06107 142 --VIVACPEEQ----------GFK-L--------T--------PEALEAAIT--------PRTRWLILNAP--SNPTGAV 182 (402)
T ss_pred --EEecCCccc----------CCC-C--------C--------HHHHHhhcC--------cCceEEEEECC--CCCCCcC
Confidence 001110000 000 0 0 144555443 234444444 5 5667765
Q ss_pred cCCHHHHHHHHHHHHhc-CCcEEEeecccCcccCCccch-hccc--CCCCcEE---Eeccccc-CCccccceeecchHHH
Q 003466 637 MVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETT-ADLL--GCVPDIA---CYGKLLT-GGVIPLAATLATNAVF 708 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~-gilLI~DEV~TGfGRtG~~~a-~e~~--gv~PDiv---tlgKgLg-gGy~PlsAvl~~~~i~ 708 (818)
. +.+-++++.++|++| |+++|.||++..+.-.+..+. .... +....++ .|||.++ .| +-+|.+++++++.
T Consensus 183 ~-s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~ 260 (402)
T PRK06107 183 Y-SRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTG-WRIGYAAGPADLI 260 (402)
T ss_pred c-CHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcc-cceeeeecCHHHH
Confidence 5 888999999999998 999999999976532332111 1111 1222344 4699997 77 6889999999888
Q ss_pred hhccCChH----------------HH--------------H---HHHHHHHHcCCCeeEEEeeee-EEEEEEecCcccCC
Q 003466 709 DSFVGDSK----------------LW--------------D---LELIQQISSHRTVQRVVALGT-LCAIELQAAGCNAG 754 (818)
Q Consensus 709 ~~l~~~~~----------------~~--------------~---~~l~~~l~~~~~v~~vrg~Gl-~~~iel~~~~~~~~ 754 (818)
+.+..... .+ . +.+.+.++.++.+.-....|. ++-+.+..-.....
T Consensus 261 ~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~~~~ 340 (402)
T PRK06107 261 AAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTT 340 (402)
T ss_pred HHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeeccccccccc
Confidence 75532110 11 0 112334444433332233343 33333321000000
Q ss_pred Cch---HHHHHHHHHH-HhCCceEeec---C--CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 755 YGS---LYAASLLKKL-REDGVYMRPL---G--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 755 ~~~---~~a~~~~~~l-~e~Gvlv~p~---g--~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.. .....++..| .++||.+.|+ | +.+|++.. .+++++++.+++|.+.++++
T Consensus 341 ~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 341 PEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--TSLETLEEACARIERAVAAL 401 (402)
T ss_pred ccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHhc
Confidence 000 1133455555 5789999984 2 56777776 46899999999999888654
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=110.39 Aligned_cols=303 Identities=12% Similarity=0.040 Sum_probs=162.6
Q ss_pred CHHHHHHHHHhhhhcccccC-----CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccc
Q 003466 418 QIELARDMGYTAARFGHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~-----~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~ 492 (818)
.|.|.+++.+......+..+ ..+..+...++.+++++++|-+ +..++.++|+.+...++.++ |.+...+|+
T Consensus 83 ~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~-r~~~~~~Gd- 158 (481)
T PRK04366 83 NPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMI-RAYHEARGD- 158 (481)
T ss_pred CHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHH-HHHhhccCc-
Confidence 68888888875322222111 2233466788889999988742 33556678888887777666 443333221
Q ss_pred ccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhc
Q 003466 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (818)
Q Consensus 493 ~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (818)
.+|.+||+.+. .|.+...++...|.... .++....+
T Consensus 159 -----------~~~~~Vlv~~~-~hp~~~~~~~~~G~~vv----------------------------~v~~~~~~---- 194 (481)
T PRK04366 159 -----------TKRTEVIVPDS-AHGTNPASAAMAGFKVV----------------------------EIPSNEDG---- 194 (481)
T ss_pred -----------CCCCEEEEcCC-ccHhHHHHHHHcCCEEE----------------------------EeecCCCC----
Confidence 13456666665 66665554433332110 11110000
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh
Q 003466 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (818)
Q Consensus 573 ~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~ 652 (818)
..| .+.+++.+. +++++|++--- . ..|.+ ..-+++|.++|++
T Consensus 195 -------~~D------------------~e~L~~~i~--------~~t~~V~v~~P-n-~tG~~---~~dl~eI~~~a~~ 236 (481)
T PRK04366 195 -------LVD------------------LEALKAAVG--------EDTAALMLTNP-N-TLGLF---ERNILEIAEIVHE 236 (481)
T ss_pred -------CcC------------------HHHHHhhcc--------cCCeEEEEeCC-C-Ccccc---chHHHHHHHHHHH
Confidence 011 245555553 24455555321 3 44543 1238999999999
Q ss_pred cCCcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccC----Cccc-cceeecchHHHhhcc-------------
Q 003466 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG----GVIP-LAATLATNAVFDSFV------------- 712 (818)
Q Consensus 653 ~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLgg----Gy~P-lsAvl~~~~i~~~l~------------- 712 (818)
+|+++|+|.++. .+-+|.. ....+| .|+++. -|.|++ | -| +|.+.+++++.+.+.
T Consensus 237 ~gal~iVD~a~~-~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~G-gp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l 311 (481)
T PRK04366 237 AGGLLYYDGANL-NAILGKA-RPGDMG--FDVVHLNLHKTFSTPHGGG-GPGSGPVGVKEELAPFLPVPVVEKDGDRYRL 311 (481)
T ss_pred cCCEEEEEecCh-hhhcccC-CccccC--CCEEEEechhhcCCCCCCC-CCCeeeeeehhhhHhhCCCCeeeccCCceee
Confidence 999999999984 2333322 122334 488754 387762 2 13 334455665554431
Q ss_pred ----CCh--H----------------H---HH---------------HHHHHHHHcCCCeeEEEeeeeE-EEEEEecCcc
Q 003466 713 ----GDS--K----------------L---WD---------------LELIQQISSHRTVQRVVALGTL-CAIELQAAGC 751 (818)
Q Consensus 713 ----~~~--~----------------~---~~---------------~~l~~~l~~~~~v~~vrg~Gl~-~~iel~~~~~ 751 (818)
... + + +. +.+.+.|++...+. . .+.. ..+-+...
T Consensus 312 ~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~-~--~~~~~~~~~~~~~-- 386 (481)
T PRK04366 312 DYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDIYDLP-Y--DRPCMHEFVLSGK-- 386 (481)
T ss_pred cccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCccc-C--CCCeeEEEEEECc--
Confidence 000 0 0 00 11222333321111 0 1111 11111100
Q ss_pred cCCCchHHHHHHHHHHHhCCceEee------cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 003466 752 NAGYGSLYAASLLKKLREDGVYMRP------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLK 816 (818)
Q Consensus 752 ~~~~~~~~a~~~~~~l~e~Gvlv~p------~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~~~~~ 816 (818)
........+..+.++|.++|+++.. ..+.+|+++...+|++|||+++++|.++.+++..--+.+|
T Consensus 387 ~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~~~~~~~ 457 (481)
T PRK04366 387 KLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKENPELVK 457 (481)
T ss_pred cccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHhCcHhHh
Confidence 0000001356789999999998752 2468999999999999999999999999988875544444
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-07 Score=104.75 Aligned_cols=275 Identities=12% Similarity=0.122 Sum_probs=159.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
.+.+.+|+.+.+...... .+..+...+|.+.++++.+-. -+.++++++.++|+..+++.. -+.|
T Consensus 37 p~~~~~a~~~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~-~~~i~it~G~~~~l~~~~~~l-----~~~g------- 100 (351)
T PRK14807 37 PEEVIKNIQEIVKSSQVN---IYPDPTAEKLREELARYCSVV-PTNIFVGNGSDEIIHLIMLAF-----INKG------- 100 (351)
T ss_pred CHHHHHHHHHHhhcCccc---CCCCccHHHHHHHHHHHhCCC-cccEEEecCHHHHHHHHHHHh-----cCCC-------
Confidence 689999998877532111 122233466778888876532 357888888888888777754 1222
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (818)
..|++.+.+|.+... .....|... +.+|..- +
T Consensus 101 ---------d~Vlv~~p~y~~~~~-~~~~~g~~~------------------------------~~v~~~~--------~ 132 (351)
T PRK14807 101 ---------DVVIYPHPSFAMYSV-YSKIAGAVE------------------------------IPVKLKE--------D 132 (351)
T ss_pred ---------CEEEEeCCChHHHHH-HHHHcCCeE------------------------------EEeecCC--------C
Confidence 368888887765321 112222110 1111000 0
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
+. -+ .+.+++.+. ..++.+|++... ++-.|...+ .+++.++|++++.++
T Consensus 133 --~~---------~d--------~~~l~~~~~-------~~~~k~v~l~~p-~NPtG~~~~----~~~l~~l~~~~~~~~ 181 (351)
T PRK14807 133 --YT---------YD--------VGSFIKVIE-------KYQPKLVFLCNP-NNPTGSVIE----REDIIKIIEKSRGIV 181 (351)
T ss_pred --CC---------CC--------HHHHHHHhh-------ccCCCEEEEeCC-CCCCCCCCC----HHHHHHHHHhCCCEE
Confidence 00 00 144555554 224556665553 777888776 677888888888999
Q ss_pred EEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccccceeecchHHHhhccCCh--H------------HH-
Q 003466 658 IFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS--K------------LW- 718 (818)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~--~------------~~- 718 (818)
|+||++..|. |.... ...+-.+.++ +|||.+| .| +.+|.+++++++++.+.... . .+
T Consensus 182 ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 257 (351)
T PRK14807 182 VVDEAYFEFY--GNTIV-DVINEFENLIVLRTLSKAFGLAG-LRVGYAVANENILKYLNLVKSPYNINSLSQVIALKVLR 257 (351)
T ss_pred EEeCcchhhc--ccchH-HHhhhCCCEEEEecchHhcccch-hceeeeecCHHHHHHHHHccCCCCcCHHHHHHHHHHHh
Confidence 9999997762 32111 1111112333 7999998 78 79999999999888664311 0 11
Q ss_pred ----H----------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC------
Q 003466 719 ----D----------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG------ 778 (818)
Q Consensus 719 ----~----------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g------ 778 (818)
. +.+.+.+++.+.+.-....|.++-+.+. + ...+++.|.++||.+++..
T Consensus 258 ~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~i~~~-~----------~~~~~~~l~~~gV~v~~~~~~~~~~ 326 (351)
T PRK14807 258 TGVLKERVNYILNERERLIKELSKIPGIKVYPSKTNFILVKFK-D----------ADYVYQGLLERGILVRDFSKVEGLE 326 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECcCCccEEEEEcC-C----------HHHHHHHHHHCCEEEEECCCCCCCC
Confidence 0 1123334444433222233444434442 1 3467888999999998731
Q ss_pred CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 779 NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 779 ~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+|+... ++++.+++++.|++.+
T Consensus 327 ~~iRis~~---~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 327 GALRITVS---SCEANDYLINGLKELL 350 (351)
T ss_pred CeEEEEcC---CHHHHHHHHHHHHHhh
Confidence 56788764 4678888888887643
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=106.71 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=109.7
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc---EEEeccccc-C
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD---IACYGKLLT-G 693 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD---ivtlgKgLg-g 693 (818)
.++.+|++-+- ++-.|... +.+-++.+.++| +++++|.||++..|...... ....-.+. +-+|||.+| .
T Consensus 167 ~~~k~i~l~~P-~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~---~~~~~~~~~ivi~SfSK~~g~~ 239 (374)
T PRK02610 167 PPVRVVFVVHP-NSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTTLV---GELAQHPNWVILRTFSKAFRLA 239 (374)
T ss_pred CCceEEEEeCC-CCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccchH---HHHhcCCCEEEEEecchhccCc
Confidence 45666665553 88888887 666788888887 49999999999777311111 11111233 337999995 6
Q ss_pred CccccceeecchHHHhhccCCh------H--------------HH----------HHHHHHHHHcCCCeeEEEeeeeEEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS------K--------------LW----------DLELIQQISSHRTVQRVVALGTLCA 743 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~------~--------------~~----------~~~l~~~l~~~~~v~~vrg~Gl~~~ 743 (818)
| +.+|.+++++++++.+.... . .+ .+.+.+.++.++.+......|.++-
T Consensus 240 G-lRiG~~v~~~~l~~~l~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~ 318 (374)
T PRK02610 240 A-HRVGYAIGHPELIAVLEKVRLPYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLRVWPSAANFLY 318 (374)
T ss_pred c-cceeeeecCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEeCCCcceEEE
Confidence 7 79999999998887653211 0 00 0112334444444322223344444
Q ss_pred EEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 744 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 744 iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.+... ..+..+++.|.++||++++..+.+|++.. +++++++++++|.+++..+
T Consensus 319 ~~l~~~--------~~~~~~~~~l~~~gi~v~~~~~~lRls~~---~~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 319 LRLSQD--------AALAALHQALKAQGTLVRHTGGGLRITIG---TPEENQRTLERLQAALTQL 372 (374)
T ss_pred EeCCCC--------CCHHHHHHHHHHCCEEEEeCCCeEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence 444321 12456888899999999987778888854 3577899999998887654
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.1e-08 Score=107.56 Aligned_cols=292 Identities=8% Similarity=0.047 Sum_probs=169.6
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
..||+..+ .+.+|. +|++++++.+.+.....+. ..-..+|-+.|++.++-. .+.++++++++|++..+++
T Consensus 30 ~~i~l~~n--en~~~~--~~~v~~a~~~~~~~~~~Yp-----~~g~~~Lr~aia~~~~~~-~~~I~vt~Gs~e~i~~~~~ 99 (366)
T PRK01533 30 SFVKLASN--ENPFGC--SPRVLDELQKSWLDHALYP-----DGGATTLRQTIANKLHVK-MEQVLCGSGLDEVIQIISR 99 (366)
T ss_pred ceEEeCCC--CCCCCC--CHHHHHHHHHHHHhcCcCC-----CCCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 67787653 334554 6899999988765543221 112345666666655432 3689999999999888888
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... +.| ..|++.+-+|.+....+ ...|..
T Consensus 100 ~l~-----~~g----------------d~vlv~~P~y~~~~~~~-~~~g~~----------------------------- 128 (366)
T PRK01533 100 AVL-----KAG----------------DNIVTAGATFPQYRHHA-IIEGCE----------------------------- 128 (366)
T ss_pred Hhc-----CCC----------------CEEEEcCCcHHHHHHHH-HHcCCE-----------------------------
Confidence 651 222 25777777776533221 111111
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
.+.+|... + ..| .+.+++.+.. ..-..+|..| ++-.|.+. +
T Consensus 129 -v~~v~~~~--------~--~~d------------------~~~l~~~~~~-------~~~~v~i~~P--~NPTG~~~-~ 169 (366)
T PRK01533 129 -VKEVALNN--------G--VYD------------------LDEISSVVDN-------DTKIVWICNP--NNPTGTYV-N 169 (366)
T ss_pred -EEEeecCC--------C--CcC------------------HHHHHHHhCc-------CCcEEEEeCC--CCCCCCCc-C
Confidence 01111000 0 001 1455555531 1223444555 78888877 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccCCCCcEE---Eeccccc-CCccccceeecchHHHhhccCC
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgKgLg-gGy~PlsAvl~~~~i~~~l~~~ 714 (818)
.+-+++|.++|++++ ++|+||++..|-..+.. .......-.+.++ +|||.+| .| +-+|.+++++++++.+...
T Consensus 170 ~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~ 247 (366)
T PRK01533 170 DRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLNVV 247 (366)
T ss_pred HHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHHHh
Confidence 788889999998877 57789999766322211 0111111122333 7999998 67 6888899999888765321
Q ss_pred hH-------------------HHH-----------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHH
Q 003466 715 SK-------------------LWD-----------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL 764 (818)
Q Consensus 715 ~~-------------------~~~-----------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~ 764 (818)
.. .+. +.+.+.++.++ +.-....|.++-+.+. + +..+.
T Consensus 248 ~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~g-~~~~~~~~nf~~~~~~-~----------~~~~~ 315 (366)
T PRK01533 248 RLPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENE-IPFYQSQTNFIFLPVE-N----------GGEIY 315 (366)
T ss_pred cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCcCcEEEEeCC-C----------HHHHH
Confidence 10 010 11112233332 1112334555545442 2 34688
Q ss_pred HHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 765 KKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 765 ~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.|.++||++++..+.+|++. -+.+|.++++++|++.++..
T Consensus 316 ~~l~~~GI~Vr~~~~~iRis~---~~~~~~~~l~~al~~~~~~~ 356 (366)
T PRK01533 316 EACAHAGFIIRPFPNGVRITV---GTREQNEGVISVLQQHFENK 356 (366)
T ss_pred HHHHHCCcEEccCCCceEEeC---CCHHHHHHHHHHHHHHHHhc
Confidence 899999999998777788875 56899999999998876443
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-07 Score=104.43 Aligned_cols=285 Identities=12% Similarity=0.010 Sum_probs=164.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC--CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~--~l~~v~f~~SGseA~e~A 477 (818)
.+||+.+|. ..... .|.+.+++.+......+.. ..+..+...++++.+.+..+.. ..+.++.++++++|...+
T Consensus 22 ~~i~l~~~~---p~~~~-~~~~~~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~ 96 (357)
T TIGR03539 22 GIVDLSVGT---PVDPV-PPLIRAALAAAADAPGYPQ-TWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWL 96 (357)
T ss_pred CeEEccCCC---CCCCC-CHHHHHHHHHHHhhCCCCc-ccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHH
Confidence 678887753 22334 6788888887655433321 2344566778888887653311 136889998999988777
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
+.+. ....| ..|++-+-+|.+....+ ...|..
T Consensus 97 ~~~l----~~~~g----------------d~Vl~~~p~y~~~~~~~-~~~g~~--------------------------- 128 (357)
T TIGR03539 97 PTLL----GLGPG----------------DTVVIPELAYPTYEVGA-LLAGAT--------------------------- 128 (357)
T ss_pred HHHH----cCCCC----------------CEEEECCCCcHHHHHHH-HhcCCE---------------------------
Confidence 6643 01222 25777777776532111 111110
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
.+. ++|. + .+. ..++.+|++... ++..|...
T Consensus 129 ---~~~----------------v~~~------------------~----~l~-------~~~~~~v~~~~p-~NPtG~~~ 159 (357)
T TIGR03539 129 ---PVA----------------ADDP------------------T----ELD-------PVGPDLIWLNSP-GNPTGRVL 159 (357)
T ss_pred ---Eec----------------cCCh------------------h----hcC-------ccCccEEEEeCC-CCCcCccC
Confidence 000 0010 1 121 235567777664 78888777
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cc--cCC--CCcEE--Eeccccc-CCccccceeecchHHHh
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DL--LGC--VPDIA--CYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~--~gv--~PDiv--tlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+.+.+++|.++|++||+++|.||++..|...+..... .. .+. ..-++ +|||.++ .| +-+|.+++++++++
T Consensus 160 -~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-~R~G~~i~~~~~~~ 237 (357)
T TIGR03539 160 -SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAG-YRAGFVAGDPALVA 237 (357)
T ss_pred -CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCc-eeEEEEecCHHHHH
Confidence 7888999999999999999999999766544432111 10 010 11233 7999975 45 67888999988877
Q ss_pred hccCCh--------H--------------HH----------HHHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCCc
Q 003466 710 SFVGDS--------K--------------LW----------DLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYG 756 (818)
Q Consensus 710 ~l~~~~--------~--------------~~----------~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~ 756 (818)
.+.... . .+ .+.+.+.+.+++. .-.... |.++-+.+..
T Consensus 238 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~g~-~~~~p~~~~~~~~~~~~-------- 308 (357)
T TIGR03539 238 ELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKAGF-RIDHSEAGLYLWATRGE-------- 308 (357)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCcCCCccEEEEEECCC--------
Confidence 553110 0 00 0112233444331 111222 3333333321
Q ss_pred hHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHH
Q 003466 757 SLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 757 ~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l 801 (818)
.+..+.+.|.++||.+.|+ .+.+|++... +++++++++++|
T Consensus 309 --~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~~i~~~~~~l 356 (357)
T TIGR03539 309 --DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA--TDERIAAAVARL 356 (357)
T ss_pred --CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC--CHHHHHHHHHhh
Confidence 1446788899999999873 2678888764 578999988765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=109.54 Aligned_cols=182 Identities=11% Similarity=-0.032 Sum_probs=111.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (818)
+.+++.+.. .+ ..|++=.. ..-++ ..+ +++++++|++||++|++|++| ++|-.|-....+.++.
T Consensus 210 d~l~~~~~~-------~~-plvii~g~-S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH-~~Gligg~~~~~~~~~~ 274 (493)
T PRK13580 210 DEIAALARE-------FK-PLILVAGY-SAYPR-RVN----FAKLREIADEVGAVLMVDMAH-FAGLVAGKVFTGDEDPV 274 (493)
T ss_pred HHHHHHHhh-------cC-CEEEEeCc-cccCC-CcC----HHHHHHHHHHcCCEEEEECch-hhceeccccchhhcCCC
Confidence 556666652 22 23333343 34444 444 999999999999999999999 5666662221122211
Q ss_pred -CCcEE--EecccccCCccccceeecchHHHhhccCChH--------------------H-------HHHH-------HH
Q 003466 681 -VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSK--------------------L-------WDLE-------LI 723 (818)
Q Consensus 681 -~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~~~--------------------~-------~~~~-------l~ 723 (818)
..|++ |++|+|.|- ..|.+++++++.+.+..... . +.++ +.
T Consensus 275 ~~~D~vtgT~hKaL~GP--~GG~I~~~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La 352 (493)
T PRK13580 275 PHADIVTTTTHKTLRGP--RGGLVLAKKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALA 352 (493)
T ss_pred CCCcEEEeCChhhccCC--CeEEEEecHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 46765 789999552 13457788888876621110 0 1111 22
Q ss_pred HHHHcCCC-eeEEEeeeeEEEEEEecCcccCCCchHH-HHHHHHHHHhCCceEee-------c----CCEEEEECCC---
Q 003466 724 QQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLY-AASLLKKLREDGVYMRP-------L----GNVIYLMCGP--- 787 (818)
Q Consensus 724 ~~l~~~~~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~-a~~~~~~l~e~Gvlv~p-------~----g~~ir~~ppl--- 787 (818)
+.+.+.+. +..-.....++.+.+.+. .. ...+.+.|.++||++.+ . ..+||+.++.
T Consensus 353 ~~L~~~G~~vv~ggTdshIV~V~lg~~--------~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~tt 424 (493)
T PRK13580 353 EGFLKRGARLVTGGTDNHLVLIDVTSF--------GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTT 424 (493)
T ss_pred HHHHhcCCCccCCCCCCCEEEEEeCCH--------HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhh
Confidence 33433332 100001235666666543 22 33667799999999973 2 4689999999
Q ss_pred -CChHHHHHHHHHHHHHHHHHH
Q 003466 788 -CSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 788 -~~t~edId~~~~~l~~~l~~l 808 (818)
.++++||+++++.|.++++..
T Consensus 425 rg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 425 LGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHhh
Confidence 557999999999999988754
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-07 Score=102.35 Aligned_cols=315 Identities=12% Similarity=0.046 Sum_probs=169.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ 476 (818)
.+|++..|.-.....+...+.+.+++.+.+..-. .+....+..+....+++.+....|.+ ..+.+++++++++|+..
T Consensus 32 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 111 (409)
T PLN02656 32 RVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDV 111 (409)
T ss_pred eeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHH
Confidence 6666655432222223226889999988776521 11111233455566666665533211 12579999999999888
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
++.... ..| ..|+.-+-+|.+.. ......|...
T Consensus 112 ~~~~l~-----~~g----------------d~Vlv~~p~y~~~~-~~~~~~g~~~------------------------- 144 (409)
T PLN02656 112 ALSMLA-----RPG----------------ANILLPRPGFPIYE-LCAAFRHLEV------------------------- 144 (409)
T ss_pred HHHHHh-----CCC----------------CeEEEeCCCCCcHH-HHHHHcCCEE-------------------------
Confidence 887651 222 25777777764321 1111111110
Q ss_pred CcceeecC-c-chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 557 NSKWILSL-P-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 557 ~~~~~v~~-P-~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
..++. + +.+. .| .+.+++.+. ....+.+++-| ++-.|
T Consensus 145 ---~~i~~~~~~~~~-----------~d------------------~~~l~~~~~-------~~~~~v~l~~P--~NPtG 183 (409)
T PLN02656 145 ---RYVDLLPEKGWE-----------VD------------------LDAVEALAD-------QNTVALVIINP--GNPCG 183 (409)
T ss_pred ---EEEeCCCcCCCC-----------CC------------------HHHHHHHhc-------cCceEEEEECC--CCCCC
Confidence 00110 0 0000 01 144555553 23455666667 56677
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCc---EEEeccc-ccCCccccceeecc-----
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD---IACYGKL-LTGGVIPLAATLAT----- 704 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD---ivtlgKg-LggGy~PlsAvl~~----- 704 (818)
.+. +.+.+++|.++|++||+++|.||++..|--.|+.+ ....++-... +-.|||. ...| +-+|.++++
T Consensus 184 ~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG-lRiG~~i~~~~~~~ 261 (409)
T PLN02656 184 NVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPG-WRLGWFVTTDPSGS 261 (409)
T ss_pred CCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcc-eeEEEEEEeCcccc
Confidence 766 78889999999999999999999998773333221 1111111111 2379998 4456 689989883
Q ss_pred ---hHHHhhccC-------ChH--------HHH------------------HHHHHHHHcCCCee-EEEeee-eEEEEEE
Q 003466 705 ---NAVFDSFVG-------DSK--------LWD------------------LELIQQISSHRTVQ-RVVALG-TLCAIEL 746 (818)
Q Consensus 705 ---~~i~~~l~~-------~~~--------~~~------------------~~l~~~l~~~~~v~-~vrg~G-l~~~iel 746 (818)
+++++.+.. .+. .+. +.+.+.|+.++... .++..| +++-+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l 341 (409)
T PLN02656 262 FRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKL 341 (409)
T ss_pred cccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEec
Confidence 455543321 111 111 01223344444322 123334 4444454
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.... ..... .....+.+.|.++||++.|+ .+.+|++.. .+++++++.+++|.+++...
T Consensus 342 ~~~~-~~~~~-~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~~~~~~~ 404 (409)
T PLN02656 342 NLSL-LEDIS-DDIDFCFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEEALGRIKSFYLRH 404 (409)
T ss_pred chhh-cCCCC-CHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 3110 00000 01122346677899999984 257788776 37899999999999887643
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-08 Score=112.86 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=107.6
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.+++++||++|+..++.... ..| .+||+....|+|.
T Consensus 54 ~~~p~~~~le~~lA~l~g~---~~~v~~~sG~~Ai~~al~~l~-----~~G----------------d~Vl~~~~~y~~t 109 (418)
T TIGR01326 54 LMNPTTDVLEQRIAALEGG---VAALAVASGQAAITYAILNLA-----QAG----------------DNIVSSSYLYGGT 109 (418)
T ss_pred CCChhHHHHHHHHHHHhCC---CeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEECCCcHHH
Confidence 4567789999999999873 688999999999999998652 122 3688888888763
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. ....-. .. ..| ...+.+| .+|
T Consensus 110 ~-~~~~~~-~~------------~~G-------------~~v~~v~--------------~~d----------------- 131 (418)
T TIGR01326 110 Y-NLFKHT-LK------------RLG-------------IEVRFVD--------------PDD----------------- 131 (418)
T ss_pred H-HHHHHH-HH------------HcC-------------cEEEEEC--------------CCC-----------------
Confidence 2 211000 00 000 0000001 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. +++++|++|.. ++..|.+.+ +++|.++|++||+++|+||++. .|. ......
T Consensus 132 -~~~l~~~l~--------~~t~~V~le~p-~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~~-----~~~~l~ 191 (418)
T TIGR01326 132 -PEEFEKAID--------ENTKAVFAETI-GNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TPY-----LCRPID 191 (418)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hhh-----cCCchh
Confidence 145666553 35678999986 777777665 8999999999999999999984 221 112223
Q ss_pred CCCcEE--EecccccC-Cccccceeecch
Q 003466 680 CVPDIA--CYGKLLTG-GVIPLAATLATN 705 (818)
Q Consensus 680 v~PDiv--tlgKgLgg-Gy~PlsAvl~~~ 705 (818)
..+|++ +++|.++| | ..+|.+++++
T Consensus 192 ~g~Divv~S~sK~l~g~G-~~lGg~v~~~ 219 (418)
T TIGR01326 192 HGADIVVHSATKYIGGHG-TAIGGVIVDG 219 (418)
T ss_pred cCCeEEEECccccccCCc-cceEEEEEec
Confidence 347887 68999997 6 6888877753
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-07 Score=104.82 Aligned_cols=313 Identities=13% Similarity=0.107 Sum_probs=176.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-C-CC-cEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-W-AS-RAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~-l~-~v~f~~SGseA~ 474 (818)
..||+.+|. ..++. .|.+.+++.+.+..... +. ..+..+....+++.+.+..+-. - .+ .+++++++.+|.
T Consensus 45 ~~i~L~~g~--p~~~~--~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al 119 (410)
T PRK06290 45 ELIDMGVGE--PDEMA--DESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPAL 119 (410)
T ss_pred CeEEcCCCC--CCCCC--CHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHH
Confidence 788887754 34442 57788888876643211 11 1344566667777776543311 0 13 588888888888
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
..++... -..| ..|+...-+|.+....+ ...|..
T Consensus 120 ~~~~~~~-----~~~g----------------d~Vlv~~P~y~~~~~~~-~~~g~~------------------------ 153 (410)
T PRK06290 120 AMLPSCF-----INPG----------------DVTLMTVPGYPVTGTHT-KYYGGE------------------------ 153 (410)
T ss_pred HHHHHHh-----CCCC----------------CEEEEeCCCCccHHHHH-HHcCCE------------------------
Confidence 7777754 1222 36888888887643221 111111
Q ss_pred ccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAA 632 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~ 632 (818)
.+.+|-.- +-.| .| .+.+++.+. .++.+|++. | ++-
T Consensus 154 ------v~~v~~~~--------~~~~~~d------------------~~~l~~~~~--------~~~k~i~l~nP--~NP 191 (410)
T PRK06290 154 ------VYNLPLLE--------ENNFLPD------------------LDSIPKDIK--------EKAKLLYLNYP--NNP 191 (410)
T ss_pred ------EEEEecCC--------CcCCcCC------------------HHHHHHhhc--------ccceEEEEECC--CCC
Confidence 01111000 0000 01 134444443 245566666 6 787
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccCC-CCcE--EEeccccc-CCccccceeecchHH
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGC-VPDI--ACYGKLLT-GGVIPLAATLATNAV 707 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv-~PDi--vtlgKgLg-gGy~PlsAvl~~~~i 707 (818)
.|.+. +.+-+++|.++|++||+++|.||++..|--.+..-.+ +..+. ..+| -+|||.+| .| +-+|.+++++++
T Consensus 192 TG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~G-lRiG~ii~~~~l 269 (410)
T PRK06290 192 TGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTG-WRLAFVVGNELI 269 (410)
T ss_pred CCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCch-hheEeEEeCHHH
Confidence 88777 8999999999999999999999999765211221111 11111 1123 38999996 56 688889999988
Q ss_pred HhhccCC-------h-H--------HH---------H-------HHHHHHHHcCCCeeEEEeeeeEE-EEEEecCcccCC
Q 003466 708 FDSFVGD-------S-K--------LW---------D-------LELIQQISSHRTVQRVVALGTLC-AIELQAAGCNAG 754 (818)
Q Consensus 708 ~~~l~~~-------~-~--------~~---------~-------~~l~~~l~~~~~v~~vrg~Gl~~-~iel~~~~~~~~ 754 (818)
++.+... . . .+ . +.+.+.|++++. .-....|.++ -+.+..... ..
T Consensus 270 ~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~p~g~f~l~v~lp~~~~-~~ 347 (410)
T PRK06290 270 VKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEVGF-KAEMPGGTFYLYVKAPKGTK-SG 347 (410)
T ss_pred HHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhCCC-eecCCCeeeEEEEECCCccc-cC
Confidence 8765321 0 0 00 0 112233444432 2122334443 345532200 00
Q ss_pred CchHHHHHHHHHHHhCCceE-eec---CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLREDGVYM-RPL---GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~Gvlv-~p~---g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~ 809 (818)
.....+..+++.|+++|+++ .|. ++.+|++... ..++++-++++++|++.|..++
T Consensus 348 ~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 348 IKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDVE 407 (410)
T ss_pred CCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhcc
Confidence 00013567899999887554 453 3568887754 4678899999999999987664
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-07 Score=108.34 Aligned_cols=178 Identities=11% Similarity=0.030 Sum_probs=99.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
+.+++.++. ...++ |++ ++ ..|+..+ +++|.++|+++|+++++|++| ++|..+.........
T Consensus 172 ~~L~~~l~~-----~~~~l--vi~~~s----~~g~~~d----i~~I~~i~~~~ga~l~vDaaq-~~G~i~~~~~~~~~~- 234 (452)
T PTZ00094 172 DKLEELAKA-----FRPKL--IIAGAS----AYPRDID----YKRFREICDSVGAYLMADIAH-TSGLVAAGVLPSPFP- 234 (452)
T ss_pred HHHHHHHHH-----hCCCE--EEEeCC----CCCCccC----HHHHHHHHHHcCCEEEEeccc-hhccccCCCCCCCCC-
Confidence 567777752 12233 333 44 3456665 899999999999999999999 677765421111111
Q ss_pred CCcEEEec--ccccCCccccceeecchHHHhh--------ccC----ChH------------HH---------------H
Q 003466 681 VPDIACYG--KLLTGGVIPLAATLATNAVFDS--------FVG----DSK------------LW---------------D 719 (818)
Q Consensus 681 ~PDivtlg--KgLggGy~PlsAvl~~~~i~~~--------l~~----~~~------------~~---------------~ 719 (818)
..|+++++ |.|+|-. .|.+++++++.+. +.. ... .+ .
T Consensus 235 ~~D~l~~S~hK~l~GP~--Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~ 312 (452)
T PTZ00094 235 YADVVTTTTHKSLRGPR--SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNA 312 (452)
T ss_pred CCcEEEcCCccCCCCCC--ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 46888655 9887631 2445556544321 111 111 00 0
Q ss_pred HHHHHHHHcCCCeeEEEeee---eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee----------cCCEEEEECC
Q 003466 720 LELIQQISSHRTVQRVVALG---TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----------LGNVIYLMCG 786 (818)
Q Consensus 720 ~~l~~~l~~~~~v~~vrg~G---l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----------~g~~ir~~pp 786 (818)
+.+.+.|.+.+. .+.+.+ .+..+.+.... .....+...|.++||++.. ....+|+.++
T Consensus 313 ~~l~~~L~~~g~--~v~~~~~~~~~~~v~~~~~~-------~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~ 383 (452)
T PTZ00094 313 KALAAALEKRGY--DLVTGGTDNHLVLVDLRPFG-------ITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTP 383 (452)
T ss_pred HHHHHHHHhCCc--EEecCCCCCceEeecCCcCC-------CCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCH
Confidence 122233333221 121111 12222222111 1244566777778999952 1268999996
Q ss_pred CCCh----HHHHHHHHHHHHHHHHH
Q 003466 787 PCSS----PEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 787 l~~t----~edId~~~~~l~~~l~~ 807 (818)
...| ++||+++++.|.+++..
T Consensus 384 ~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 384 ALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 6554 99999999999999875
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-07 Score=114.70 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=165.0
Q ss_pred CChhHHHHHHHHHhccCCCCCCcE-EEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 441 VYEPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~l~~v-~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.+...+|++.|++++| ++.+ ++-+||+.|+.+++... |.|+..+|+ ++|+ +|....+-||+
T Consensus 541 ~lq~i~elq~~l~eLtG---md~~Sl~p~sGA~gE~A~Lmai-r~yh~~~Ge------------~~r~-~vLIp~saHgt 603 (954)
T PRK12566 541 YRAMIDELEAWLCAITG---FDAICMQPNSGAQGEYAGLLAI-RRYHRSRGQ------------SQRD-ICLIPSSAHGT 603 (954)
T ss_pred HHHHHHHHHHHHHHHHC---CCeEeecCCchHHHHHHHHHHH-HHHHHhcCC------------CCCC-EEEeccccccc
Confidence 34567799999999998 4555 45558999988888877 777776665 4454 45556688887
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
....+...|.. .+.+|..- -..+ |
T Consensus 604 Npasa~~~Gie------------------------------Vv~Vp~D~-----------~G~i--------D------- 627 (954)
T PRK12566 604 NPASAQMAGMR------------------------------VVIVECDP-----------DGNV--------D------- 627 (954)
T ss_pred CHHHHHHCCCE------------------------------EEEeccCC-----------CCCc--------C-------
Confidence 65443333221 11111000 0000 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhccc
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~ 678 (818)
.+.|++.+. ++.+++++|++--. ... |++. ..+++|.++|+++|+++++|=++. +.+.... -..
T Consensus 628 -le~L~a~I~-----~~~~~laaVmiT~P-nt~-Gv~e---~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~---Pg~- 692 (954)
T PRK12566 628 -LDDLKAKAA-----AAGDRLSCLMITYP-STH-GVYE---EGIREICEVVHQHGGQVYMDGANLNAQVGLAR---PAD- 692 (954)
T ss_pred -HHHHHHHhh-----ccCCCEEEEEEEec-CcC-ceec---chHHHHHHHHHHcCCEEEEEeeChhhccCCCC---hhh-
Confidence 256777775 34568888877653 343 4332 338999999999999999998885 2211111 112
Q ss_pred CCCCcEEEec--cccc----CCccc-cceeecchHHHhhccCC---------hH--------------------HHH---
Q 003466 679 GCVPDIACYG--KLLT----GGVIP-LAATLATNAVFDSFVGD---------SK--------------------LWD--- 719 (818)
Q Consensus 679 gv~PDivtlg--KgLg----gGy~P-lsAvl~~~~i~~~l~~~---------~~--------------------~~~--- 719 (818)
+-.|+++++ |.++ +| .| +|.+.+++.+...+... .+ ++.
T Consensus 693 -~GADi~~~s~HKtf~~P~G~G-GP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG 770 (954)
T PRK12566 693 -IGADVSHMNLHKTFCIPHGGG-GPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMG 770 (954)
T ss_pred -cCCCEEEecCCcccCcCccCC-CCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHC
Confidence 235888775 8664 45 35 45556677555444321 00 100
Q ss_pred --------------HHHHHHHHcCCCeeEEEee-e---eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe----ec
Q 003466 720 --------------LELIQQISSHRTVQRVVAL-G---TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL 777 (818)
Q Consensus 720 --------------~~l~~~l~~~~~v~~vrg~-G---l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~----p~ 777 (818)
.-+.++|.+...+.. .+. | .-+.+.+..-+.. ....+..++++|++.||+.. |.
T Consensus 771 ~eLk~aa~~ailnAnYla~rL~~~~~v~~-~~~~~~~~hEfii~~~~l~~~---~g~~~~dvakRL~d~Gihapt~~fPv 846 (954)
T PRK12566 771 PQLADASEVAILSANYLANQLGGAFPVLY-RGRNERVAHECILDLRPLKAQ---TGISEEDVAKRLMDYGFHAPTMSFPV 846 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhCCCCc-CCCCCCeeeEEEEEccccccc---cCCCHHHHHHHHHHCCcEEeEEeecc
Confidence 012233333211211 111 1 1122222211100 00124668999999999875 44
Q ss_pred CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhHH
Q 003466 778 GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 813 (818)
Q Consensus 778 g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~~ 813 (818)
.+.+++.|.-..|++|||++++++....++++++.+
T Consensus 847 ~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~v~~ 882 (954)
T PRK12566 847 PGTLMVEPTESESKAELDRFVEAMLSIRAEIGKVQE 882 (954)
T ss_pred CCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 688999999999999999999999999999887754
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-08 Score=97.01 Aligned_cols=165 Identities=18% Similarity=0.139 Sum_probs=105.4
Q ss_pred HHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccccc
Q 003466 446 LECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME 525 (818)
Q Consensus 446 ~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als 525 (818)
.++.++++++++.+ .+.++++++|++|++.+++.+ + ..+.+|+..+..|||.......
T Consensus 3 ~~~~~~l~~~~~~~-~~~~~~~~~~t~a~~~~~~~~-~--------------------~~~~~v~~~~~~~~~~~~~~~~ 60 (170)
T cd01494 3 EELEEKLARLLQPG-NDKAVFVPSGTGANEAALLAL-L--------------------GPGDEVIVDANGHGSRYWVAAE 60 (170)
T ss_pred HHHHHHHHHHcCCC-CCcEEEeCCcHHHHHHHHHHh-C--------------------CCCCEEEEeecccceehhhHHH
Confidence 57788888888322 468999999999999999987 1 1134788888888876522111
Q ss_pred ccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHH
Q 003466 526 AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605 (818)
Q Consensus 526 ~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le 605 (818)
..+... ..++.+... +.+ .. .+.++
T Consensus 61 ~~g~~~----------------------------~~v~~~~~~-----------~~~-------------~~---~~~~~ 85 (170)
T cd01494 61 LAGAKP----------------------------VPVPVDDAG-----------YGG-------------LD---VAILE 85 (170)
T ss_pred hcCCEE----------------------------EEeccCCCC-----------ccc-------------hh---hhhhh
Confidence 111110 001100000 000 00 01122
Q ss_pred HHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE
Q 003466 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA 685 (818)
Q Consensus 606 ~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv 685 (818)
+. ....+++++++++. +..+|...+ .++|.++|+++|+++|+||++.++...... .......+|++
T Consensus 86 ~~-------~~~~~~~~v~~~~~-~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~d~~ 151 (170)
T cd01494 86 EL-------KAKPNVALIVITPN-TTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG--VLIPEGGADVV 151 (170)
T ss_pred hc-------cccCceEEEEEecC-cCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc--cccccccCCEE
Confidence 21 23567899999997 788887775 499999999999999999999877554433 12223458999
Q ss_pred Eec--ccccCCccccceeec
Q 003466 686 CYG--KLLTGGVIPLAATLA 703 (818)
Q Consensus 686 tlg--KgLggGy~PlsAvl~ 703 (818)
+.| |.+++ .+.|.+++
T Consensus 152 ~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 152 TFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred EEEcccccCC--CceEEEEe
Confidence 888 99987 46666654
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-07 Score=105.05 Aligned_cols=305 Identities=10% Similarity=0.031 Sum_probs=169.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e 475 (818)
.+||+..|.. .++ ..+.+.+++.+.+..... +....+..+....+++.+....|.+ ..+ .|+.++++.+|..
T Consensus 31 ~~i~l~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~ 106 (388)
T PRK07366 31 ELIDLSLGSS--DLP--APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTA 106 (388)
T ss_pred CeEEeCCCCC--CCC--CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHH
Confidence 6677765432 233 268899999887753211 1111233456666777776543321 124 5888888899988
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.++++. -..| ..|++.+-+|.+....+.. .|..
T Consensus 107 ~~~~~l-----~~~g----------------d~Vlv~~P~y~~~~~~~~~-~g~~------------------------- 139 (388)
T PRK07366 107 HLPLAV-----LNPG----------------DFALLLDPGYPSHAGGVYL-AGGQ------------------------- 139 (388)
T ss_pred HHHHHh-----CCCC----------------CEEEEcCCCCcchHHHHHh-cCCE-------------------------
Confidence 887765 1222 3688888888765422221 1111
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+++|-.. + + .|. .+ .+.+++.+. .+..+|++-+- ++-.|.
T Consensus 140 -----~~~v~~~~--------~---~----~~~--~d--------~~~l~~~~~--------~~~k~i~l~~p-~NPTG~ 180 (388)
T PRK07366 140 -----IYPMPLRA--------E---N----DFL--PV--------FADIPTEVL--------AQARLMVLSYP-HNPTTA 180 (388)
T ss_pred -----EEEEECCC--------c---c----CCC--CC--------HHHHHHhhc--------ccceEEEEeCC-CCCCCc
Confidence 01111000 0 0 000 00 123333332 12345555553 788888
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-c-hhcccCCCCc--E--EEeccccc-CCccccceeecchHHH
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-T-TADLLGCVPD--I--ACYGKLLT-GGVIPLAATLATNAVF 708 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~-a~e~~gv~PD--i--vtlgKgLg-gGy~PlsAvl~~~~i~ 708 (818)
+. +.+-+++|.++|++||+++|.||++.-|--.+.. . ....+.-.-+ | -+|||.+| .| +-+|.++++++++
T Consensus 181 ~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~li 258 (388)
T PRK07366 181 IA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG-FRIGFAIGNAQLI 258 (388)
T ss_pred cC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc-hhheehcCCHHHH
Confidence 76 7889999999999999999999999766322321 1 1111111112 2 38999997 67 7899999999887
Q ss_pred hhccCC---------hH-------HHH-----------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC
Q 003466 709 DSFVGD---------SK-------LWD-----------------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 755 (818)
Q Consensus 709 ~~l~~~---------~~-------~~~-----------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~ 755 (818)
+.+... .. .+. +.+.+.+++++........|.++-+.+...-
T Consensus 259 ~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~~~~~~----- 333 (388)
T PRK07366 259 QALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPW----- 333 (388)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECCccc-----
Confidence 755311 10 000 1122334444321111234555555553210
Q ss_pred chHHHHHHHHHH-HhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKL-REDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 756 ~~~~a~~~~~~l-~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
. ..+..++..| .++||++.|+ .+.+|++.. .+++++++.+++|.+.
T Consensus 334 ~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 334 Q-GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALV--HDPDILEEAVERIAAF 387 (388)
T ss_pred C-CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence 0 0134577666 4679999973 256787764 4689999999998764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8e-07 Score=102.12 Aligned_cols=317 Identities=15% Similarity=0.073 Sum_probs=171.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ 476 (818)
.+|++..|.-...-.+...+++.+|+.++++.... +....+..+....+++.+....+.+ .-+.|++++++++|...
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l 132 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI 132 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH
Confidence 67776654222211233357899999988865221 1112234455566666665432211 12579999999999998
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.. ...| ..|+..+-+|......+ ...|...
T Consensus 133 ~~~~l-----~~~G----------------d~Vlv~~P~y~~y~~~~-~~~g~~~------------------------- 165 (430)
T PLN00145 133 IMSVL-----AQPG----------------ANILLPRPGYPLYEARA-VFSGLEV------------------------- 165 (430)
T ss_pred HHHHh-----cCCC----------------CEEEEcCCCCccHHHHH-HHcCCEE-------------------------
Confidence 88865 1222 26788777777633221 1111110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
..++++.. ++ |. .| .+.+++.+. ....+.+++-| .+..|.+
T Consensus 166 ---~~~~~~~~-------------~~----~~--~d--------~~~l~~~~~-------~~~~~i~i~~P--~NPtG~v 206 (430)
T PLN00145 166 ---RHFDLLPE-------------RG----WE--VD--------LEGVEALAD-------ENTVAMVIINP--NNPCGSV 206 (430)
T ss_pred ---EEeeCCcc-------------cC----Cc--CC--------HHHHHHHhC-------cCceEEEEeCC--CCCCCCC
Confidence 00110000 00 00 00 145555553 23456777777 5667775
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCcE---EEeccc-ccCCccccceeecc--hHHH-
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDI---ACYGKL-LTGGVIPLAATLAT--NAVF- 708 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDi---vtlgKg-LggGy~PlsAvl~~--~~i~- 708 (818)
. +.+.+++|.++|++||+++|.||++..|--.+.-+ ....++-...+ -.|||. +.-| +-+|.+++. +.++
T Consensus 207 ~-~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-~RlG~iv~~~~~~~~~ 284 (430)
T PLN00145 207 Y-SYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPG-WRLGWIATCDPNGILK 284 (430)
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCC-eeEEEEEEecchhhhh
Confidence 5 88999999999999999999999997663222211 11111111122 279999 4456 688888862 2221
Q ss_pred -----hhc---cC----ChH--------HHH------------------HHHHHHHHcCCCeeE-EEeeeeEEE-EEEec
Q 003466 709 -----DSF---VG----DSK--------LWD------------------LELIQQISSHRTVQR-VVALGTLCA-IELQA 748 (818)
Q Consensus 709 -----~~l---~~----~~~--------~~~------------------~~l~~~l~~~~~v~~-vrg~Gl~~~-iel~~ 748 (818)
+.+ .. ... .+. +.+.+.|+.++.+.. .+..|.++. +.+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~ 364 (430)
T PLN00145 285 ETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDL 364 (430)
T ss_pred hhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccCh
Confidence 111 00 000 110 112334455554432 234455443 33321
Q ss_pred CcccCCCchHHHHHHHHHH-HhCCceEeec---C--CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKL-REDGVYMRPL---G--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l-~e~Gvlv~p~---g--~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.. ..+......++.+| .++||++.|+ | +.+|++.. .+++++++.+++|.+.+.+..
T Consensus 365 ~~---~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~--~~~~~l~~al~rl~~~~~~~~ 426 (430)
T PLN00145 365 SC---LSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFA--IDPPSLEDGLERLKSFCLRHA 426 (430)
T ss_pred hh---cCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhc
Confidence 10 00000134566555 4779999984 2 67888776 478899999999998887654
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-07 Score=102.87 Aligned_cols=305 Identities=15% Similarity=0.122 Sum_probs=175.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-cccc-CCCC---CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVM-FPEN---VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~-~~~~---~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
-|+|..+..- - +|++.+++...+... +.-+ ...+ .....++.-+.++++++.. -+.++|+++|+|+|
T Consensus 3 iYlD~~ATTp------~-~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~-~~eIiFTSG~TEsn 74 (386)
T COG1104 3 IYLDNAATTP------V-DPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGAD-PEEIIFTSGATESN 74 (386)
T ss_pred ccccccccCC------C-CHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCC-CCeEEEecCCcHHH
Confidence 4777765222 1 799999999988875 3211 0000 1234445556777777754 37999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
-.||+-++..+..+ .+++.||+-.- =|=....++.--. ..|.
T Consensus 75 NlaI~g~~~a~~~~---------------~~~~HIIts~i-EH~aVl~~~~~Le--------------~~g~-------- 116 (386)
T COG1104 75 NLAIKGAALAYRNA---------------QKGKHIITSAI-EHPAVLNTCRYLE--------------RQGF-------- 116 (386)
T ss_pred HHHHHhhHHhhhcc---------------cCCCeEEEccc-ccHHHHHHHHHHH--------------hcCC--------
Confidence 99999763333221 12234554333 2322222221110 0000
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
+++|-+.+. + .. .-.+.|++.|. +++..|-+=-+ +++-|
T Consensus 117 ----------------------~Vtyl~V~~------~--G~--v~~e~L~~al~--------~~T~LVSim~a-NnE~G 155 (386)
T COG1104 117 ----------------------EVTYLPVDS------N--GL--VDLEQLEEALR--------PDTILVSIMHA-NNETG 155 (386)
T ss_pred ----------------------eEEEeCCCC------C--Ce--EcHHHHHHhcC--------CCceEEEEEec-ccCee
Confidence 011111100 0 00 00266777775 34556666666 88899
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecc-cccCCccccceeecchHHHhh-c-
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK-LLTGGVIPLAATLATNAVFDS-F- 711 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK-gLggGy~PlsAvl~~~~i~~~-l- 711 (818)
.+.| +++|.++|+++|++|.+|=|| .+|+.-- +......|+++||- -++|- =.+|++..++.+.=. +
T Consensus 156 ~IQp----I~ei~~i~k~~~i~fHvDAvQ-a~Gkipi----~~~~~~vD~ls~SaHK~~Gp-kGiGaLyv~~~~~~~p~i 225 (386)
T COG1104 156 TIQP----IAEIGEICKERGILFHVDAVQ-AVGKIPI----DLEELGVDLLSFSAHKFGGP-KGIGALYVRPGVRLEPLI 225 (386)
T ss_pred eccc----HHHHHHHHHHcCCeEEEehhh-hcCceec----cccccCcceEEeehhhccCC-CceEEEEECCCCccCcee
Confidence 9998 999999999999999999999 6766521 11222368998875 23331 235566655543211 1
Q ss_pred cCChH------------------------------------HHHHHHHHHHHcC-CCeeEEEe-----eeeEEEEEEecC
Q 003466 712 VGDSK------------------------------------LWDLELIQQISSH-RTVQRVVA-----LGTLCAIELQAA 749 (818)
Q Consensus 712 ~~~~~------------------------------------~~~~~l~~~l~~~-~~v~~vrg-----~Gl~~~iel~~~ 749 (818)
.++++ .+++.+.+.+... |.+. +.| .--.+.+-|..-
T Consensus 226 ~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~-~~g~~~~rlP~~~~~~f~gv 304 (386)
T COG1104 226 HGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVY-LNGDDEPRLPNILNFSFPGV 304 (386)
T ss_pred ccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE-EcCCcccCCCCeEEEEeCCC
Confidence 11111 1223344444433 3321 111 122333333322
Q ss_pred cccCCCchHHHHHHHHHHHhCCceEee------------------------cCCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 750 GCNAGYGSLYAASLLKKLREDGVYMRP------------------------LGNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 750 ~~~~~~~~~~a~~~~~~l~e~Gvlv~p------------------------~g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+..+...|-.+||.+.. ....|||+.....|++|||.+++.|.+++
T Consensus 305 ---------~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i 375 (386)
T COG1104 305 ---------EGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEII 375 (386)
T ss_pred ---------cHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 255566666677998863 12689999999999999999999999999
Q ss_pred HHHHHh
Q 003466 806 EEFDKV 811 (818)
Q Consensus 806 ~~l~~~ 811 (818)
+.++..
T Consensus 376 ~~lr~~ 381 (386)
T COG1104 376 KRLREL 381 (386)
T ss_pred HHHhhh
Confidence 888754
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=108.23 Aligned_cols=171 Identities=14% Similarity=0.052 Sum_probs=105.9
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+|+++|+++.+. +.++.++||++|+..++.... +.| ..||+... +|+.
T Consensus 61 ~~~p~~~~Le~~iA~~~g~---~~~l~~~sG~~Ai~~al~~ll-----~~G----------------d~Vl~~~~-~y~~ 115 (400)
T PRK06234 61 LGNPTSTEVENKLALLEGG---EAAVVAASGMGAISSSLWSAL-----KAG----------------DHVVASDT-LYGC 115 (400)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHh-----CCC----------------CEEEEecC-ccch
Confidence 3466778999999999873 578899999999988876441 222 25665554 5554
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
+....... ... .| .....++ .+|
T Consensus 116 ~~~~~~~~-~~~------------~G-------------~~v~~vd--------------~~d----------------- 138 (400)
T PRK06234 116 TFALLNHG-LTR------------YG-------------VEVTFVD--------------TSN----------------- 138 (400)
T ss_pred HHHHHHHH-Hhh------------CC-------------eEEEEEC--------------CCC-----------------
Confidence 43322110 000 00 0000000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc--CCcEEEeecccCcccCCccchhcc
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADL 677 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~--gilLI~DEV~TGfGRtG~~~a~e~ 677 (818)
.+.+++.+. .+..+|++|.. .+..|.+.+ +++|.++|++| |+++|+||++. .+-.+..
T Consensus 139 -~e~l~~~i~--------~~tklI~iesP-~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~-~~~~~~~----- 198 (400)
T PRK06234 139 -LEEVRNALK--------ANTKVVYLETP-ANPTLKVTD----IKAISNIAHENNKECLVFVDNTFC-TPYIQRP----- 198 (400)
T ss_pred -HHHHHHHhc--------cCCeEEEEECC-CCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCC-chhcCCc-----
Confidence 144566553 24678999976 777787765 99999999997 99999999984 2222221
Q ss_pred cCCCCcEE--EecccccCCcccc-ceeecchHHHhhcc
Q 003466 678 LGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSFV 712 (818)
Q Consensus 678 ~gv~PDiv--tlgKgLggGy~Pl-sAvl~~~~i~~~l~ 712 (818)
.+...|++ .++|.++|.-..+ |++++++++++.+.
T Consensus 199 l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~ 236 (400)
T PRK06234 199 LQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVK 236 (400)
T ss_pred hhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHH
Confidence 12246776 5779997621343 66888888877654
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-07 Score=101.26 Aligned_cols=164 Identities=15% Similarity=0.208 Sum_probs=103.0
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCcEEEeccccc-CCcccc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIACYGKLLT-GGVIPL 698 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDivtlgKgLg-gGy~Pl 698 (818)
.+|++-.. ++-.|.+. +.+-+++|.++|++ ++++|.||++..|...+... ..+..+-..-+-+|||.++ .| +.+
T Consensus 156 k~i~l~~p-~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRi 231 (357)
T PRK14809 156 RIVYLTSP-HNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAG-LRL 231 (357)
T ss_pred cEEEEeCC-CCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcc-hhh
Confidence 34444443 78888877 66667778888765 78999999998775433211 1111111122448999998 67 799
Q ss_pred ceeecchHHHhhccCChH--------------H------HH----------HHHHHHHHcCCCeeEEEeeeeEEEEEEec
Q 003466 699 AATLATNAVFDSFVGDSK--------------L------WD----------LELIQQISSHRTVQRVVALGTLCAIELQA 748 (818)
Q Consensus 699 sAvl~~~~i~~~l~~~~~--------------~------~~----------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~ 748 (818)
|.+++++++++.+..... . +. +.+.+.+... .....|.++-+.+.
T Consensus 232 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~g~f~~~~~~- 306 (357)
T PRK14809 232 GYAVVPEEWADAYARVNTPFAASELACRAGLAALDDDEHVERTVETARWAREYIREELDAP----TWESAGNFVLAEVG- 306 (357)
T ss_pred eeeecCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc----cCCCCCCEEEEECC-
Confidence 999999988876642110 0 00 0011222211 12345666666552
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+ +..+++.|.++||++.++ .+.+|+... +++++++++++|.++++
T Consensus 307 ~----------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~---~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 307 D----------ASAVAEAAQERGVIVRDCTSFGLPECIRITCG---TREETERAVEVLNEVLA 356 (357)
T ss_pred C----------HHHHHHHHHHCCEEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence 1 346778889999999984 257888743 47899999999988764
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.3e-07 Score=102.67 Aligned_cols=193 Identities=16% Similarity=0.158 Sum_probs=113.7
Q ss_pred CHHHHHHHHHhhhhccccc--C-CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccccc
Q 003466 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~--~-~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~ 494 (818)
++++++|+.+.+..+.... + .+...+....++++|+++++. +.+++++||+.|+..++... ..|
T Consensus 94 ~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga---e~alvv~sg~aAi~l~l~~l------~~G---- 160 (454)
T TIGR00474 94 AEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA---EDALVVNNNAAAVLLALNTL------AKG---- 160 (454)
T ss_pred CHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHh------CCc----
Confidence 6999999999888764211 1 122345578899999999984 56778899999998888533 112
Q ss_pred ccCCCccccccceEEEEEcCCC---CCCccc--cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhh
Q 003466 495 FLGKDTTEKCIELKVLALKGSY---HGDTLG--AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~sY---HG~t~~--als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~ 569 (818)
..||+.++.+ .|+... .+..+|.. .+.++
T Consensus 161 ------------deVIvs~~e~v~~ggs~~i~~~~~~~G~~------------------------------~~~v~---- 194 (454)
T TIGR00474 161 ------------KEVIVSRGELVEIGGSFRIPDVMEQSGAK------------------------------LVEVG---- 194 (454)
T ss_pred ------------CEEEECCChhhhhcchhhHHHHHHHcCCE------------------------------EEEeC----
Confidence 3677766653 221100 01111100 00000
Q ss_pred hhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc--CCC--cccCCHHHHHH
Q 003466 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA--AGG--MHMVDPLFQRI 645 (818)
Q Consensus 570 ~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g--~gG--~~~~p~~fl~~ 645 (818)
+++. .. .+.+++.+. .++++|+++-. .. ..| ..++ +++
T Consensus 195 ----------~~~~----------~~-----l~dle~aI~--------~~T~lv~~~h~-sN~~~~G~~~~~d----l~~ 236 (454)
T TIGR00474 195 ----------TTNR----------TH-----LKDYEDAIT--------ENTALLLKVHT-SNYRIVGFTEEVS----IAE 236 (454)
T ss_pred ----------CCCC----------CC-----HHHHHHhcC--------cCCEEEEEEcc-CcccccCCCCCCC----HHH
Confidence 1110 00 144555553 34667676654 22 234 2444 999
Q ss_pred HHHHHHhcCCcEEEeecccCcccCCcc---ch------hcccCCCCcEEEec--ccccCCccccceeecchHHHhhcc
Q 003466 646 LVKECQNRKIPVIFDEVFTGFWRLGVE---TT------ADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 646 LreLc~~~gilLI~DEV~TGfGRtG~~---~a------~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~ 712 (818)
|.++|++||+++|+|- |+|-.|.. +. .+....-.|++++| |.|+|.. .|+++++++.++.+.
T Consensus 237 I~~la~~~g~~vivD~---~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~--~G~i~g~~~~i~~l~ 309 (454)
T TIGR00474 237 LVALGREHGLPVMEDL---GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ--AGIIVGKKELIERLK 309 (454)
T ss_pred HHHHHHHcCCeEEEEC---CCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe--EEEEEECHHHHHhhh
Confidence 9999999999999995 44444332 11 11122347999999 9998742 566788888776543
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.7e-07 Score=100.38 Aligned_cols=300 Identities=11% Similarity=0.063 Sum_probs=185.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc-CCC-----CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~-~~~-----~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA 473 (818)
-|+|..+ .+.. +..|.+|+.+...++.... ... ..+....+.-++++++++....+.+.|+.+-++|
T Consensus 24 vylD~aa------~~~~-p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 24 VYLDNAA------TSQK-PQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred EEecCcc------cccC-CHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 4777554 3445 7889999998876543211 101 1123445555667777765323679999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
.-.......+.. . ++ ..||+.+--+|....--..+... .|..
T Consensus 97 ln~va~~l~~~~--~---------------~g-deIv~s~~EH~sn~~pw~~~~~~--------------~Ga~------ 138 (405)
T COG0520 97 LNLVARGLGRSL--K---------------PG-DEIVVSDLEHHSNIVPWQELAKR--------------TGAK------ 138 (405)
T ss_pred HHHHHHHhhhhh--c---------------CC-CEEEEccCcchhhHHHHHHHHHh--------------cCcE------
Confidence 877766441111 1 12 47888888888755322222200 0100
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
+..+++.+. ..++ .+.++..+ .+++..|.+--+ ++.-
T Consensus 139 -----v~~i~~~~~-----------------g~~~------------~~~~~~~i--------~~~Tklvais~v-Sn~t 175 (405)
T COG0520 139 -----VRVIPLDDD-----------------GLLD------------LDALEKLI--------TPKTKLVALSHV-SNVT 175 (405)
T ss_pred -----EEEEecCCC-----------------CCcC------------HHHHHHhc--------CCCceEEEEECc-cccc
Confidence 001111000 0000 14455544 357788888887 8888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhc
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l 711 (818)
|.+.| +++|.++|+++|+++++|=+|+ +|- . -.+.-.+..|+++|| |.|.|- .-+|+..+++++.+.+
T Consensus 176 G~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h-~---~idv~~l~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l 245 (405)
T COG0520 176 GTVNP----VKEIAELAHEHGALVLVDAAQA-AGH-L---PIDVQELGCDFLAFSGHKWLLGP-TGIGVLYVRKELLEEL 245 (405)
T ss_pred cccch----HHHHHHHHHHcCCEEEEECccc-cCc-c---CCCchhcCCCEEEEcccccccCC-CceEEEEEchHHHhhc
Confidence 99988 9999999999999999999984 321 1 111122347888877 767764 3478888999998766
Q ss_pred cCChH--------------------------------------------------------HHHHHHHHHHHcCCCeeEE
Q 003466 712 VGDSK--------------------------------------------------------LWDLELIQQISSHRTVQRV 735 (818)
Q Consensus 712 ~~~~~--------------------------------------------------------~~~~~l~~~l~~~~~v~~v 735 (818)
.+... .+.+.+.+.++..+.+.-.
T Consensus 246 ~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~ 325 (405)
T COG0520 246 EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIY 325 (405)
T ss_pred CCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 22100 0112234556666654322
Q ss_pred E----eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-------------CEEEEECCCCChHHHHHHHH
Q 003466 736 V----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-------------NVIYLMCGPCSSPEVCSQLL 798 (818)
Q Consensus 736 r----g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-------------~~ir~~ppl~~t~edId~~~ 798 (818)
. ..+.++.+.+... .+..++..|-++||.++.+. ..+|+++.+-.|+||||+++
T Consensus 326 g~~~~~r~~~vsF~v~~~---------~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~ 396 (405)
T COG0520 326 GPPDADRGGIVSFNVKGI---------HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLL 396 (405)
T ss_pred cCCcccCceEEEEEeCCC---------CHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHH
Confidence 1 2566666666543 25678899999998888642 23999999999999999999
Q ss_pred HHHHHHHH
Q 003466 799 LKLYQRLE 806 (818)
Q Consensus 799 ~~l~~~l~ 806 (818)
++|++..+
T Consensus 397 ~aL~~~~~ 404 (405)
T COG0520 397 EALKKALA 404 (405)
T ss_pred HHHHHHhh
Confidence 99988764
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-07 Score=102.77 Aligned_cols=162 Identities=16% Similarity=0.258 Sum_probs=96.7
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHHhc-CCcEEEeecccCcccCCccchhcccCCCC-cEE--Eeccccc-CCcc
Q 003466 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGCVP-DIA--CYGKLLT-GGVI 696 (818)
Q Consensus 622 AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~-gilLI~DEV~TGfGRtG~~~a~e~~gv~P-Div--tlgKgLg-gGy~ 696 (818)
.++..| +.-.|.+.+ . +++.++|+.+ |+++|+||++..|+. .... ...+..+ .++ +|||.+| .| +
T Consensus 148 v~~~~P--~NPtG~~~~-~---~~~~~l~~~~~~~~livDe~y~~~~~--~~~~-~~~~~~~~~i~~~S~SK~~~~~G-l 217 (353)
T PRK05387 148 IIFPNP--NAPTGIALP-L---AEIERILAANPDSVVVIDEAYVDFGG--ESAI-PLIDRYPNLLVVQTFSKSRSLAG-L 217 (353)
T ss_pred EEEeCC--CCCCCCCCC-H---HHHHHHHHhCCCcEEEEeCcccccCC--cchH-HHHhhCCCEEEEEehhHhhcchh-h
Confidence 566677 677888775 4 4445555544 999999999976742 1110 1111112 233 6999987 66 5
Q ss_pred ccceeecchHHHhhccCC-------h--H--------H------H----------HHHHHHHHHcCCCeeEEEeeeeEEE
Q 003466 697 PLAATLATNAVFDSFVGD-------S--K--------L------W----------DLELIQQISSHRTVQRVVALGTLCA 743 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~-------~--~--------~------~----------~~~l~~~l~~~~~v~~vrg~Gl~~~ 743 (818)
.+|.+++++++.+.+... . . . + .+.+.+.+++++. .-....|.++-
T Consensus 218 R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~ 296 (353)
T PRK05387 218 RVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALGF-EVLPSKANFVF 296 (353)
T ss_pred hceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCC-eECCCcCcEEE
Confidence 888899998887654211 0 0 0 0 0112334444432 11122333433
Q ss_pred EEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-----CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 744 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 744 iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-----~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+.+.. ..+..+++.|.++||++++.+ +.+|+... +++++++++++|.+++.
T Consensus 297 ~~~~~---------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 297 ARHPS---------HDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred EECCC---------CCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 33321 125578889999999997632 56888764 67999999999988754
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-07 Score=103.92 Aligned_cols=287 Identities=12% Similarity=0.075 Sum_probs=161.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
..||+..|. +.+| - .|.+.+++.+. ....++ ..+...+|-++|++.++-. .+.|++++++++++..+++
T Consensus 53 ~~i~l~~n~--~p~~-~-~~~v~~a~~~~-~~~~~Y-----p~~~~~~lr~~ia~~~~~~-~~~I~~t~Ga~~~i~~~~~ 121 (380)
T PLN03026 53 DIVKLDANE--NPYG-P-PPEVLEALGNM-KFPYVY-----PDPESRRLRAALAEDSGLE-SENILVGCGADELIDLLMR 121 (380)
T ss_pred ceEEccCCC--CCCC-C-CHHHHHHHHhh-HhhccC-----CCCCHHHHHHHHHHHhCcC-hhhEEEcCCHHHHHHHHHH
Confidence 678877632 2344 3 68888888652 211111 1222456777787776532 3679999989999988877
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.. -..| ..|+..+-+|..... .....|.+.
T Consensus 122 ~~-----~~~g----------------d~Vlv~~P~y~~y~~-~~~~~g~~~---------------------------- 151 (380)
T PLN03026 122 CV-----LDPG----------------DKIIDCPPTFGMYVF-DAAVNGAEV---------------------------- 151 (380)
T ss_pred Hh-----cCCC----------------CEEEEcCCChHHHHH-HHHHcCCEE----------------------------
Confidence 54 1222 257777777753211 111111110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..++....+ -.| .+.+++.+. ..++.+|++... ++..|.+.+
T Consensus 152 ~~v~~~~~~-----------~~d------------------~~~l~~~~~-------~~~~~~v~l~~P-~NPTG~~~~- 193 (380)
T PLN03026 152 IKVPRTPDF-----------SLD------------------VPRIVEAVE-------THKPKLLFLTSP-NNPDGSIIS- 193 (380)
T ss_pred EEeecCCCC-----------CcC------------------HHHHHHHHh-------ccCCcEEEEeCC-CCCCCCCCC-
Confidence 001100000 001 144555552 124456666654 788888875
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc-E--EEeccccc-CCccccceeecchHHHhhccCCh
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-I--ACYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-i--vtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~ 715 (818)
.+++.++++.. +++|+||++..|...+... ....-.+. + -+|||.+| .| +-+|.+++++++++.+....
T Consensus 194 ---~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~--~~~~~~~~viv~~SfSK~~glaG-lRiGy~~~~~~~i~~l~~~~ 266 (380)
T PLN03026 194 ---DDDLLKILELP-ILVVLDEAYIEFSTQESRM--KWVKKYDNLIVLRTFSKRAGLAG-LRVGYGAFPLSIIEYLWRAK 266 (380)
T ss_pred ---HHHHHHHHhcC-CEEEEECcchhhcCCcchH--HHHHhCCCEEEEecchHhhcCcc-ccceeeecCHHHHHHHHHhc
Confidence 45666666654 8999999998774322211 11111222 2 38999998 77 68899999998887653211
Q ss_pred --H------------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHH
Q 003466 716 --K------------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLK 765 (818)
Q Consensus 716 --~------------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~ 765 (818)
. .+ ++.+.+.|+.++.+.-....|.++-+.+... ..+..+++
T Consensus 267 ~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~~~~~--------~~~~~~~~ 338 (380)
T PLN03026 267 QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCRVTSG--------RDAKKLKE 338 (380)
T ss_pred CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEECCCC--------CCHHHHHH
Confidence 0 00 0123344555543321223455555554321 12456888
Q ss_pred HHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 766 KLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 766 ~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
.|.++||++++. .+.+|++.. ++++.++++++|++
T Consensus 339 ~l~~~gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~ 378 (380)
T PLN03026 339 DLAKMGVMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQ 378 (380)
T ss_pred HHHHCCeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHH
Confidence 999999999874 257888765 57788888888865
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-07 Score=102.47 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=106.7
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcE---EEeccccc-CCcc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLLT-GGVI 696 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi---vtlgKgLg-gGy~ 696 (818)
..+++-| ++-.|.+. +.+.+++|.++|+++|+++|.||++..|....... .+.-.+.+ -+|||.+| .| +
T Consensus 127 ~v~l~nP--~NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~---~~~~~~~vi~~~SfSK~~gl~G-l 199 (330)
T PRK05664 127 VLVVVNP--NNPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLA---ACAHRPGLIVLRSFGKFFGLAG-A 199 (330)
T ss_pred EEEEeCC--cCCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCccccc---ccccCCCEEEEeeccccccCCC-c
Confidence 4677888 56778766 77889999999999999999999997663211111 11112333 38999998 78 7
Q ss_pred ccceeecchHHHhhccCCh------H--------HH----------------HHHHHHHHHcCCCeeEEEe-eeeEEEEE
Q 003466 697 PLAATLATNAVFDSFVGDS------K--------LW----------------DLELIQQISSHRTVQRVVA-LGTLCAIE 745 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~------~--------~~----------------~~~l~~~l~~~~~v~~vrg-~Gl~~~ie 745 (818)
-+|.+++++++++.+.... . .+ ++.+.+.+++++. .+.+ .+.++-+.
T Consensus 200 RiG~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~~~~~~f~~~~ 277 (330)
T PRK05664 200 RLGFVLAEPALLRALAELLGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHGL--TPAGGCALFQWVR 277 (330)
T ss_pred ceEEEEeCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCCC--cccCCcceEEEEe
Confidence 9999999998887654211 0 00 0123334444432 1112 11232222
Q ss_pred EecCcccCCCchHHHHHHHHHHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+ . .+..+++.|.++||+++..+ +.+|++... ++++.++++++|++..++
T Consensus 278 ~--~---------~~~~~~~~l~~~gi~v~~f~~~~~iRis~~~--~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 278 T--E---------DAAALHEFLARRGILTRLFEQPASLRFGLPA--DEADWARLDQALLAYRKE 328 (330)
T ss_pred c--C---------CHHHHHHHHHHCCeEEEECCCCCeEEEECCC--CHHHHHHHHHHHHHHHhh
Confidence 2 1 14578889999999998743 678887653 578888888888776554
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=108.76 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=104.9
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.|. +.+++++||+.|+..+++... +.| ..||+....|+|.
T Consensus 60 ~~~p~~~~le~~lA~l~g~---~~al~~~SG~~Ai~~al~all-----~pG----------------d~VIv~~~~y~~t 115 (427)
T PRK05994 60 ITNPTNAVLEERVAALEGG---TAALAVASGHAAQFLVFHTLL-----QPG----------------DEFIAARKLYGGS 115 (427)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHh-----CCC----------------CEEEEecCcchhH
Confidence 3466788999999999874 578899999999999998652 122 3688888888774
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
... +... ....|. ..+.++ .+|
T Consensus 116 ~~~-~~~~-------------~~~~G~-------------~v~~vd--------------~~d----------------- 137 (427)
T PRK05994 116 INQ-FGHA-------------FKSFGW-------------QVRWAD--------------ADD----------------- 137 (427)
T ss_pred HHH-HHHH-------------HHhcCc-------------EEEEEC--------------CCC-----------------
Confidence 211 0000 000000 000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. .++.+|++|.+ .+..|.+.+ +++|.++|++||+++|+||+++. |. ....+.
T Consensus 138 -~~~l~~ai~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~a~a~----~~--~~~pl~ 197 (427)
T PRK05994 138 -PASFERAIT--------PRTKAIFIESI-ANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS----PY--LIRPIE 197 (427)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCccc----cc--cCCccc
Confidence 144555553 35789999986 788888775 89999999999999999999952 21 123344
Q ss_pred CCCcEEE--ecccccC-Cccccceeec
Q 003466 680 CVPDIAC--YGKLLTG-GVIPLAATLA 703 (818)
Q Consensus 680 v~PDivt--lgKgLgg-Gy~PlsAvl~ 703 (818)
.-+|+++ +.|.+|| | -++|++++
T Consensus 198 ~gaDivv~S~tK~lgg~~-~~~gG~v~ 223 (427)
T PRK05994 198 HGADIVVHSLTKFLGGHG-NSMGGIIV 223 (427)
T ss_pred cCCcEEEEcCccccCCCC-CcEEEEEE
Confidence 5688875 8899986 3 35665554
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.8e-07 Score=101.12 Aligned_cols=321 Identities=14% Similarity=0.057 Sum_probs=173.8
Q ss_pred EeCCcCccccceeeccccccccc--CCCCCCHHHHHHHHHhhhhc--ccccCCCCCChhHHHHHHHHHhccC------CC
Q 003466 390 YQDQKNKFIGQQFDACASWWTQG--PDATLQIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVG------KG 459 (818)
Q Consensus 390 ~D~dG~~~~~~ylD~~sg~~~~~--lGh~~hp~V~eAi~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~~------~~ 459 (818)
.+..|+ .+||+..|.-... +- - .+.+.+++.+.+... ..+.-..+..+....+++.+.+..+ ..
T Consensus 28 ~~~~~~----~~i~l~~g~p~~~~~~~-p-~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~ 101 (412)
T PTZ00433 28 PSPSPK----SIIKLSVGDPTLDGNLL-T-PAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKST 101 (412)
T ss_pred cCCCCC----CeeecCCcCCCCcCCCC-C-CHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCC
Confidence 334666 7888877643211 11 2 678899988877641 1111112344556666666654321 00
Q ss_pred -CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCC
Q 003466 460 -WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (818)
Q Consensus 460 -~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~ 538 (818)
..+.+++++++++|+..+++.. ...| ..|++..-+|.+.... ....|...
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~-----~~~g----------------d~vlv~~P~y~~~~~~-~~~~g~~~------- 152 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTAL-----CDEG----------------DNILVPAPGFPHYETV-CKAYGIEM------- 152 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHh-----cCCC----------------CEEEEccCCcccHHHH-HHHcCCEE-------
Confidence 0257999999999999988865 1122 2677777777763321 11111110
Q ss_pred CcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 003466 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (818)
Q Consensus 539 p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~ 618 (818)
..++.... ++ |. -+ .+.+++.+. .
T Consensus 153 ---------------------~~i~~~~~-------------~~----~~--~d--------~~~l~~~~~--------~ 176 (412)
T PTZ00433 153 ---------------------RFYNCRPE-------------KD----WE--AD--------LDEIRRLVD--------D 176 (412)
T ss_pred ---------------------EEEecCcc-------------cc----Cc--CC--------HHHHHHHhc--------c
Confidence 00111000 00 00 00 144555543 1
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccCCC-CcEE--Eeccccc-C
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCV-PDIA--CYGKLLT-G 693 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~-PDiv--tlgKgLg-g 693 (818)
++.+|++..- ++-.|... +.+-+++|.++|++||+++|.||++..|-..|.. .....+.-. +-++ +|||.+| .
T Consensus 177 ~~~~i~~~~p-~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p 254 (412)
T PTZ00433 177 RTKALIMTNP-SNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVP 254 (412)
T ss_pred CceEEEEeCC-CCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCC
Confidence 3445555332 67778666 7888999999999999999999999876323321 111111111 1232 7899985 5
Q ss_pred Cccccceeec------chHHHhhccC-------ChH--------HHH------------------HHHHHHHHcCCCeeE
Q 003466 694 GVIPLAATLA------TNAVFDSFVG-------DSK--------LWD------------------LELIQQISSHRTVQR 734 (818)
Q Consensus 694 Gy~PlsAvl~------~~~i~~~l~~-------~~~--------~~~------------------~~l~~~l~~~~~v~~ 734 (818)
| +-+|.+++ .+++++.+.. ... .+. +.+.+.|+.+..+.-
T Consensus 255 G-lRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 333 (412)
T PTZ00433 255 G-WRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSP 333 (412)
T ss_pred C-eeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 6 78888886 2445543321 011 110 012233333322322
Q ss_pred EEee-eeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 735 VVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 735 vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+... |.++-+.+.... . .+.....++++.|+ ++||++.|+ .+.+|++.. ..++++++.+++|.++++.
T Consensus 334 ~~p~gg~f~~~~l~~~~--~-~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 334 TMPRGSMFLMSRLDLEK--F-RDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS--RPVEVLREAVERIKAFCER 408 (412)
T ss_pred cCCCeeEEEEEEechhh--c-CCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 3333 444444553210 0 00001456888887 579999984 256777765 3478999999999998876
Q ss_pred HH
Q 003466 808 FD 809 (818)
Q Consensus 808 l~ 809 (818)
..
T Consensus 409 ~~ 410 (412)
T PTZ00433 409 HK 410 (412)
T ss_pred hc
Confidence 54
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-07 Score=102.96 Aligned_cols=290 Identities=16% Similarity=0.162 Sum_probs=167.6
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
+++|+..+ .+.+|. +|.+.+|+.+.+..+..+. .+...+|-+.++++++-. -+.++++++++++...+++
T Consensus 20 ~~~~l~~~--~~~~~~--p~~~~~a~~~~~~~~~~Y~-----~~~~~~lr~~ia~~~~~~-~~~i~it~Ga~~~l~~~~~ 89 (354)
T PRK06358 20 MILDFSAN--INPLGV--PESLKQAITENLDKLVEYP-----DPDYLELRKRIASFEQLD-LENVILGNGATELIFNIVK 89 (354)
T ss_pred ceEEecCC--CCCCCC--CHHHHHHHHHHHHhhhcCC-----CccHHHHHHHHHHHhCCC-hhhEEECCCHHHHHHHHHH
Confidence 57888653 234454 6899999998776543222 112345556666655432 3689999999999888877
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.. . + ..|+..+-+|+.....+ ...|...
T Consensus 90 ~~-----~----------------~--~~v~i~~P~y~~~~~~~-~~~g~~~---------------------------- 117 (354)
T PRK06358 90 VT-----K----------------P--KKVLILAPTFAEYERAL-KAFDAEI---------------------------- 117 (354)
T ss_pred Hh-----C----------------C--CcEEEecCChHHHHHHH-HHcCCee----------------------------
Confidence 53 1 1 26788888887643222 1111110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCcccC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHMV 638 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~~g~gG~~~~ 638 (818)
+.+|- ++ +..|. .| .+.++ .+. . ++.+ ++.-| ++-.|...
T Consensus 118 --~~~~~--------------~~-~~~~~--~d--------~~~~~-~~~-------~-~~~~v~~~~P--~NPtG~~~- 158 (354)
T PRK06358 118 --EYAEL--------------TE-ETNFA--AN--------EIVLE-EIK-------E-EIDLVFLCNP--NNPTGQLI- 158 (354)
T ss_pred --EEEeC--------------cc-ccCCC--cc--------HHHHH-hhc-------c-CCCEEEEeCC--CCCCCCcc-
Confidence 01110 00 00000 00 01112 222 1 2333 46677 67778766
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCcE---EEeccccc-CCccccceeecc-hHHHhhcc
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDI---ACYGKLLT-GGVIPLAATLAT-NAVFDSFV 712 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDi---vtlgKgLg-gGy~PlsAvl~~-~~i~~~l~ 712 (818)
+.+-+++|.++|++||+++|.||+...|-..+... .....+-.+.+ -+|||.+| .| +.+|.++++ +.+++.+.
T Consensus 159 ~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~ 237 (354)
T PRK06358 159 SKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLL 237 (354)
T ss_pred CHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHH
Confidence 88999999999999999999999998774333211 11122222333 37999998 78 799999874 66655443
Q ss_pred CCh--H------------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHH
Q 003466 713 GDS--K------------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 713 ~~~--~------------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
... . .+ .+.+.+.|++++.+.-....|.++-+.+.. ...
T Consensus 238 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~~~~~~-----------~~~ 306 (354)
T PRK06358 238 QMREPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIFFKLEK-----------PID 306 (354)
T ss_pred HhCCCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcceEEEEEcCc-----------hHH
Confidence 210 0 11 012334455554433233445544444421 246
Q ss_pred HHHHHHhCCceEeec----C---CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPL----G---NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~----g---~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+++.|.++||.++++ + +.+|+.. -++++.++++++|++.+
T Consensus 307 ~~~~l~~~gI~v~~~~~f~~~~~~~iRls~---~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 307 LRKELLKKGILIRSCSNYRGLDENYYRVAV---KSREDNKKLLKALEVIL 353 (354)
T ss_pred HHHHHHHCCeEEEECCCCCCCCCCEEEEEe---CCHHHHHHHHHHHHHHh
Confidence 888999999999983 1 4577774 45789999999987764
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-06 Score=99.26 Aligned_cols=302 Identities=10% Similarity=0.007 Sum_probs=168.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC--CC-CcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WA-SRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~--~l-~~v~f~~SGseA~e~ 476 (818)
.+||+..|.. .++ - .+.+.+++.+.+.....+.-..+..+....+++.+.+..+-. .. +.++.++++++|...
T Consensus 30 ~~i~l~~~~p--~~~-~-~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~ 105 (396)
T PRK09147 30 PPISLSIGEP--KHP-T-PAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFA 105 (396)
T ss_pred CeEecCCCCC--CCC-C-CHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHH
Confidence 7888876542 233 2 578888888766543322222334556677777776543421 01 378899999999988
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++... ..| .....|++..-+|.+.... ....|.+
T Consensus 106 ~~~~l~-----~~~-------------~~gd~vlv~~P~y~~~~~~-~~~~g~~-------------------------- 140 (396)
T PRK09147 106 FAQTVI-----DRD-------------GPGPLVVCPNPFYQIYEGA-ALLAGAE-------------------------- 140 (396)
T ss_pred HHHHHc-----CCC-------------CCCCEEEEcCCCccchHHH-HHhcCCE--------------------------
Confidence 888651 110 0023677777777653221 1111111
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~ 635 (818)
.+.+|-.. +..|. .| .+.+++.+. .++.++++ .| ++-.|.
T Consensus 141 ----~~~vp~~~---------------~~~~~--~d--------~~~l~~~~~--------~~~k~i~l~nP--~NPTG~ 181 (396)
T PRK09147 141 ----PYFLNCDP---------------ANNFA--PD--------FDAVPAEVW--------ARTQLLFVCSP--GNPTGA 181 (396)
T ss_pred ----EEEeccCc---------------cccCc--cC--------HHHHHHHHh--------hccEEEEEcCC--CCCcCc
Confidence 11111000 00000 00 134444442 13445554 44 788888
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc--cch-h---cccCC-CCc----EEEeccccc-CCccccceeec
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-A---DLLGC-VPD----IACYGKLLT-GGVIPLAATLA 703 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~--~~a-~---e~~gv-~PD----ivtlgKgLg-gGy~PlsAvl~ 703 (818)
+. +.+.+++|.++|++||+++|.||++.-|--.+. ... . ...+. ..| +-+|||.++ .| +-+|.+++
T Consensus 182 ~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~ 259 (396)
T PRK09147 182 VL-PLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAG 259 (396)
T ss_pred cC-CHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc-ceeeeecC
Confidence 77 899999999999999999999999976521221 111 1 11111 112 237999754 45 78888999
Q ss_pred chHHHhhccCCh--------H--------HH-------------H---HHHHHHHHcCCCeeE-EEeeeeEEEEEEecCc
Q 003466 704 TNAVFDSFVGDS--------K--------LW-------------D---LELIQQISSHRTVQR-VVALGTLCAIELQAAG 750 (818)
Q Consensus 704 ~~~i~~~l~~~~--------~--------~~-------------~---~~l~~~l~~~~~v~~-vrg~Gl~~~iel~~~~ 750 (818)
++++++.+.... . .+ . +.+.+.+..+ +.- .-..|.++-+++..+
T Consensus 260 ~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~~g~f~~~~~~~~- 336 (396)
T PRK09147 260 DAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV--LDVQLPDAGFYLWAKVPGD- 336 (396)
T ss_pred CHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeEEEEEECCCC-
Confidence 998877553110 0 00 0 0112223322 111 123455665655311
Q ss_pred ccCCCchHHHHHHHHHHH-hCCceEeec-------------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 751 CNAGYGSLYAASLLKKLR-EDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 751 ~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
...+++.|+ ++||.+.|+ .+.+|+... .+++++++++++|.+.+
T Consensus 337 ---------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 337 ---------DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALV--APLAECVEAAERIVDFC 394 (396)
T ss_pred ---------HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 345777776 679999763 246777665 45788999999888765
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=107.84 Aligned_cols=170 Identities=12% Similarity=0.084 Sum_probs=105.3
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+|+++|+++.+. +.+++++||+.|+..++.... ..| ..||+-+. .||.
T Consensus 56 ~~~p~~~~le~~lA~l~g~---~~av~~~sG~~Ai~~~l~al~-----~~G----------------d~Vi~~~~-~y~~ 110 (391)
T TIGR01328 56 LGNPTVSNLEGRIAFLEGT---EAAVATSSGMGAIAATLLTIL-----KAG----------------DHLISDEC-LYGC 110 (391)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CCC----------------CEEEEecC-cchH
Confidence 4567788999999999984 568899999999998886541 122 24665554 4454
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
+.......-.. .|.. +.|.|.+ +
T Consensus 111 t~~~~~~~~~~-------------~G~~------------------------------~~~vd~~-------d------- 133 (391)
T TIGR01328 111 TFALLEHALTK-------------FGIQ------------------------------VDFINMA-------I------- 133 (391)
T ss_pred HHHHHHHHHhc-------------CCeE------------------------------EEEECCC-------C-------
Confidence 43322111000 0000 0011210 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. .++.+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++. .+..+.. .+
T Consensus 134 -~e~l~~~i~--------~~tklV~le~p-~Np~G~v~d----l~~I~~la~~~gi~livD~a~a-~~~~~~~-----~~ 193 (391)
T TIGR01328 134 -PEEVKAHIK--------DNTKIVYFETP-ANPTMKLID----MERVCRDAHSQGVKVIVDNTFA-TPMLTNP-----VA 193 (391)
T ss_pred -HHHHHHhhc--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCc-hhccCCc-----hh
Confidence 144555553 35678999976 677777665 8999999999999999999984 3233321 22
Q ss_pred CCCcEE--EecccccC-Cccc-cceeecchHHHhhcc
Q 003466 680 CVPDIA--CYGKLLTG-GVIP-LAATLATNAVFDSFV 712 (818)
Q Consensus 680 v~PDiv--tlgKgLgg-Gy~P-lsAvl~~~~i~~~l~ 712 (818)
.-.|++ +++|.+|| | .+ .|++++++++++.+.
T Consensus 194 ~g~Divv~S~sK~lgg~g-~~~gG~v~~~~~li~~l~ 229 (391)
T TIGR01328 194 LGVDVVVHSATKYIGGHG-DVVAGLICGKAELLQQIR 229 (391)
T ss_pred cCCCEEEccccccccCCC-CceEEEEEcCHHHHHHHH
Confidence 346776 57899986 3 34 356777888776543
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=106.83 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=55.6
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCcc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVI 696 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~ 696 (818)
++.+|++|.. .+..|.+.+ +++|.++|++||+++|+||++.. +...... .+| .|++ .++|.++|.-.
T Consensus 146 ~tklV~ie~p-~NptG~v~d----l~~I~~la~~~gi~livD~t~~~-~~~~~pl---~~g--~Divv~S~sK~~~g~g~ 214 (390)
T PRK08133 146 NTKLFFLETP-SNPLTELAD----IAALAEIAHAAGALLVVDNCFCT-PALQQPL---KLG--ADVVIHSATKYLDGQGR 214 (390)
T ss_pred CCeEEEEECC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCCcc-cccCCch---hhC--CcEEEeecceeecCCcc
Confidence 5678999976 677787765 89999999999999999999842 1111111 123 4776 57799976324
Q ss_pred cc-ceeecchHHHhh
Q 003466 697 PL-AATLATNAVFDS 710 (818)
Q Consensus 697 Pl-sAvl~~~~i~~~ 710 (818)
.+ |++++++++++.
T Consensus 215 ~~GG~vv~~~~~~~~ 229 (390)
T PRK08133 215 VLGGAVVGSKELMEE 229 (390)
T ss_pred eEeEEEEcCHHHHHH
Confidence 55 556677766543
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.2e-07 Score=101.72 Aligned_cols=302 Identities=14% Similarity=0.083 Sum_probs=165.7
Q ss_pred CHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhccccccc
Q 003466 418 QIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~ 494 (818)
++.+.+++.+.+..... +....+..+....+++.+.+..+.. ..+.|++++++.+|...++.++ ..|
T Consensus 50 p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~------~~G---- 119 (433)
T PRK06855 50 PDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLL------RRE---- 119 (433)
T ss_pred CHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhc------CCC----
Confidence 66788888876643211 1112344566777888876643311 1257999999999988877532 122
Q ss_pred ccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
..|++.+-+|++.........+.. .+.+|-...
T Consensus 120 ------------d~Vlv~~P~Y~~~~~~~~~~~g~~------------------------------~v~v~~~~~----- 152 (433)
T PRK06855 120 ------------ARVIGPSPAYSTHSSAEAAHAGYP------------------------------PVTYRLDPE----- 152 (433)
T ss_pred ------------CeEEEeCCCCchHHHHHHHhcCCe------------------------------EEEEecccc-----
Confidence 368999999998432111111111 000110000
Q ss_pred cccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc
Q 003466 575 HKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (818)
Q Consensus 575 ~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~ 653 (818)
++ | .| .+.+++.+.. ++..-+.+++.| ++-.|.+. +.+.+++|.++|++|
T Consensus 153 -~~--~~~d------------------~~~l~~~~~~-----~~~~~~i~l~~P--~NPTG~~~-s~~~~~~l~~~a~~~ 203 (433)
T PRK06855 153 -NN--WYPD------------------LDDLENKVKY-----NPSIAGILLINP--DNPTGAVY-PKEILREIVDIAREY 203 (433)
T ss_pred -cC--CCCC------------------HHHHHHHHhc-----CCCceEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHc
Confidence 00 0 01 2556666642 222344566777 67778766 899999999999999
Q ss_pred CCcEEEeecccCcccCCccchhcccCCCCc---E--EEeccccc-CCccccceeecc-----h---HHHhhccC------
Q 003466 654 KIPVIFDEVFTGFWRLGVETTADLLGCVPD---I--ACYGKLLT-GGVIPLAATLAT-----N---AVFDSFVG------ 713 (818)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~e~~gv~PD---i--vtlgKgLg-gGy~PlsAvl~~-----~---~i~~~l~~------ 713 (818)
|+++|.||++..|-..|..+.. ...+.+| | -.|||.++ .| +-+|.+++. + .+++.+..
T Consensus 204 ~~~II~De~Y~~l~~~~~~~~s-l~~~~~~~~~I~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~ 281 (433)
T PRK06855 204 DLFIICDEIYNNIVYNGKKTVP-LSEVIGDVPGIALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNAKMIEV 281 (433)
T ss_pred CCEEEEeccccccccCCCCCCC-HHHHcCcCCeEEEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHhhcccc
Confidence 9999999999877333421110 0111222 2 37999997 77 688888862 2 22221110
Q ss_pred C-hH-----------------HH-------H---HHHHHHHHcCCCeeEEEeee-eEEEEEEecCcc----cCCCch---
Q 003466 714 D-SK-----------------LW-------D---LELIQQISSHRTVQRVVALG-TLCAIELQAAGC----NAGYGS--- 757 (818)
Q Consensus 714 ~-~~-----------------~~-------~---~~l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~----~~~~~~--- 757 (818)
. .. .+ . +.+.+.|+.++.+.-....| +++-+.+..... ....+.
T Consensus 282 ~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~ 361 (433)
T PRK06855 282 CSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEV 361 (433)
T ss_pred CCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhh
Confidence 0 00 01 0 11233444444332233444 444444432100 000000
Q ss_pred ------------HHHHHHHH-HHHhCCceEeec------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 758 ------------LYAASLLK-KLREDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 758 ------------~~a~~~~~-~l~e~Gvlv~p~------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.....++. .+.++||.+.|+ ++.+|++... .++++|++.+++|.++++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 362 KEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHHHH
Confidence 01234554 456889999874 2357887754 57999999999999998753
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-07 Score=101.60 Aligned_cols=165 Identities=14% Similarity=0.150 Sum_probs=107.4
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccc
Q 003466 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (818)
Q Consensus 622 AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~P 697 (818)
.++..| ++-.|.+. +.+-+++|.++|++||+++|.||+..-|.-.+........+-.+.++ +|||.+| .| +-
T Consensus 126 v~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lR 201 (332)
T PRK06425 126 IFIVSP--DNPLGNLI-SRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPS-LR 201 (332)
T ss_pred EEEeCC--CCCcCCcc-CHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCch-hh
Confidence 455566 77788766 78899999999999999999999998773222111111111123333 8999999 88 79
Q ss_pred cceeecchHHHhhccCChH----------HH-------------------HHHHHHHHHcCCCeeEE-EeeeeEEEEEEe
Q 003466 698 LAATLATNAVFDSFVGDSK----------LW-------------------DLELIQQISSHRTVQRV-VALGTLCAIELQ 747 (818)
Q Consensus 698 lsAvl~~~~i~~~l~~~~~----------~~-------------------~~~l~~~l~~~~~v~~v-rg~Gl~~~iel~ 747 (818)
+|.+++++++++.+..... .+ ++.+.+.+++++ +..+ ...|.++-+.+.
T Consensus 202 iGy~v~~~~li~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~~g~f~~~~~~ 280 (332)
T PRK06425 202 IGYIATDDYNMKISRKITEPWSVCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAMG-FRAAGDPSANFITFMIP 280 (332)
T ss_pred heeeecCHHHHHHHHHcCCCCccCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCC-CEECCCCCceEEEEEcC
Confidence 9999999998876542110 00 011233344443 2222 234555555443
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+ +..+++.|.++||.+++. .+-+|++.. ++++.++++++|++.+
T Consensus 281 -~----------~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 281 -D----------AHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR---RRSFNIKLVNALRNFL 331 (332)
T ss_pred -C----------HHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 2 456888999999999973 146787753 5789999999998764
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.4e-07 Score=100.57 Aligned_cols=219 Identities=10% Similarity=-0.016 Sum_probs=125.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e 475 (818)
.+||+..|. ..+-. ++++.+++.+++..... +....+..+...++++.+....+.+ .-+ .+++++++++|..
T Consensus 36 ~~i~l~~g~---p~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~ 111 (394)
T PRK05942 36 DLIDLGMGN---PDGAA-PQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLT 111 (394)
T ss_pred CeEEcCCCC---CCCCC-CHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHH
Confidence 677887642 22334 66788888877653211 1111233456667777776543321 013 4788888899988
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.++... -..| ..|++.+-+|.+....+ ...|..
T Consensus 112 ~~~~~~-----~~~g----------------d~Vlv~~P~y~~~~~~~-~~~g~~------------------------- 144 (394)
T PRK05942 112 HLALAY-----VNPG----------------DVVLVPSPAYPAHFRGP-LIAGAQ------------------------- 144 (394)
T ss_pred HHHHHh-----CCCC----------------CEEEEcCCCCcchHHHH-HHcCCE-------------------------
Confidence 887754 1222 36888888887643221 111111
Q ss_pred cCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCC
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAG 633 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~g 633 (818)
.+++|-.. +..| .| .+.+++.+. .++.+|++- | ++-.
T Consensus 145 -----~~~v~~~~--------~~~~~~d------------------~~~l~~~~~--------~~~k~i~l~~P--~NPt 183 (394)
T PRK05942 145 -----IYPIILKP--------ENDWLID------------------LSSIPEEVA--------QQAKILYFNYP--SNPT 183 (394)
T ss_pred -----EEEeecCC--------ccCCccC------------------HHHHHHhcc--------ccceEEEEcCC--CCCC
Confidence 01111000 0000 01 134544442 245566655 6 6777
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc----chhcc-cCCCCcEEEeccccc-CCccccceeecchHH
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADL-LGCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~----~a~e~-~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i 707 (818)
|.+. +.+-+++|.++|++||+++|.||++.-|-..|.. ..... .+..-.+.+|||.+| .| +-+|.+++++++
T Consensus 184 G~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~G-lRiG~i~~~~~l 261 (394)
T PRK05942 184 TATA-PREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAG-WRVGFVVGNRHI 261 (394)
T ss_pred CCcC-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChh-hheeeeecCHHH
Confidence 8766 8899999999999999999999998655322321 11110 112223457999886 56 688889999998
Q ss_pred Hhhcc
Q 003466 708 FDSFV 712 (818)
Q Consensus 708 ~~~l~ 712 (818)
++.+.
T Consensus 262 ~~~l~ 266 (394)
T PRK05942 262 IQGLR 266 (394)
T ss_pred HHHHH
Confidence 87664
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-07 Score=101.61 Aligned_cols=289 Identities=15% Similarity=0.121 Sum_probs=159.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.++|+..+ .+.++- .|++++++.+.+....... +..+-..+|-+.|+++++...-+.++++++++++...+++
T Consensus 27 ~~i~l~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~---Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 27 GMVKLDAM--ENPYRL--PAELRAELGERLAEVALNR---YPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CceeCcCC--CCCCCC--CHHHHHHHHHHhhcccccc---CCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 67777653 234553 5899999998876422111 1112235666777776653211368888777788777777
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
+. ...| ..|++.+-+|.+... .....|..
T Consensus 100 ~~-----~~~g----------------d~vlv~~P~y~~~~~-~~~~~g~~----------------------------- 128 (356)
T PRK04870 100 AC-----AKPG----------------ATVLAPEPGFVMYRM-SAKLAGLE----------------------------- 128 (356)
T ss_pred Hh-----cCCC----------------CEEEECCCCHHHHHH-HHHHcCCE-----------------------------
Confidence 54 1222 367777777765321 11112211
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCcccC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMV 638 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG~~~~ 638 (818)
.+.+|-.. +. -.| .+.+++.+.. .++.+|++- | +.-.|...
T Consensus 129 -~~~i~~~~--------~~-~~d------------------~~~l~~~~~~-------~~~~~v~l~~p--~NPtG~~~- 170 (356)
T PRK04870 129 -FVGVPLTA--------DF-TLD------------------LPAMLAAIAE-------HRPALVFLAYP--NNPTGNLF- 170 (356)
T ss_pred -EEEecCCC--------CC-CCC------------------HHHHHHHhhc-------CCCCEEEEcCC--CCCCCCCC-
Confidence 11111000 00 001 1456666641 234455544 5 67778877
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCcEEEeccccc-CCccccceeecchHHHhhccCCh-
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDS- 715 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~- 715 (818)
+.+-++++.++| ++++|+||++..|.-. .+. ....++-.--+-+||| .+ .| +.+|.+++++++++.+....
T Consensus 171 ~~~~~~~i~~~~---~~~ii~De~y~~~~~~-~~~~~~~~~~~vi~~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~~~ 244 (356)
T PRK04870 171 DDADVERIIEAA---PGLVVVDEAYQPFAGD-SWLPRLARFPNLLVMRTVSK-LGLAG-LRLGYLAGHPAWIAELDKVRP 244 (356)
T ss_pred CHHHHHHHHHHC---CCEEEEECCchhhcCc-chHHHHhhCCCEEEEecchh-hhhHH-HhhhhhhCCHHHHHHHHHccC
Confidence 566666666666 7899999999877421 111 1111110011237999 44 35 68888999998877653210
Q ss_pred -----H--------HH------H----------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHH
Q 003466 716 -----K--------LW------D----------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKK 766 (818)
Q Consensus 716 -----~--------~~------~----------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~ 766 (818)
. .+ + +.+.+.++..+.+.-....|.++-+.+. + ...+++.
T Consensus 245 ~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~ 313 (356)
T PRK04870 245 PYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVTVFPSAANFILVRVP-D----------AAAVFDG 313 (356)
T ss_pred CCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEECC-C----------HHHHHHH
Confidence 0 00 0 1123344445443222334444444442 1 3457788
Q ss_pred HHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 767 LREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 767 l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
|.++||.+++. .+.+|+... +.++.++++++|+++
T Consensus 314 l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~ 355 (356)
T PRK04870 314 LKTRGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAA 355 (356)
T ss_pred HHHCCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence 99999999873 257888765 688999999988765
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-07 Score=104.37 Aligned_cols=287 Identities=14% Similarity=0.025 Sum_probs=162.8
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+++|.+|+.+.... |. .....+...++.++|+++++.+.-+.+++.+||++|++.++...+ +.|
T Consensus 21 ~~~V~~a~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~-----~~G------- 84 (401)
T PLN02409 21 PERVLRAMNRPNED--HR--SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL-----SPG------- 84 (401)
T ss_pred CHHHHHHhcCCCCC--CC--CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC-----CCC-------
Confidence 56666666543311 21 112245667778888888765422468999999999999987541 122
Q ss_pred CCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
.+|++.+.+|.+....-+ ...|.. ...++.+...
T Consensus 85 ---------d~Vlv~~~~~~~~~~~~~~~~~g~~----------------------------v~~v~~~~~~-------- 119 (401)
T PLN02409 85 ---------DKVVSFRIGQFSLLWIDQMQRLNFD----------------------------VDVVESPWGQ-------- 119 (401)
T ss_pred ---------CEEEEeCCCchhHHHHHHHHHcCCc----------------------------eEEEECCCCC--------
Confidence 378888877765331110 000100 0011111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHH--HHhcC
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE--CQNRK 654 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreL--c~~~g 654 (818)
..| .+.+++.+.. ....++.+|++-.+ ....|.+.+ ++++.++ |+++|
T Consensus 120 ---~~~------------------~~~l~~~l~~----~~~~~~k~v~~~~~-~~~tG~~~~----~~~i~~l~~~~~~g 169 (401)
T PLN02409 120 ---GAD------------------LDILKSKLRQ----DTNHKIKAVCVVHN-ETSTGVTND----LAGVRKLLDCAQHP 169 (401)
T ss_pred ---CCC------------------HHHHHHHHhh----CcCCCccEEEEEee-cccccccCC----HHHHHHHHhhhccC
Confidence 000 2556666752 00125666666554 556788886 7888888 99999
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccC-------------------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG------------------- 713 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~------------------- 713 (818)
+++|+|++++ +|.. -...+.+ ..|++ ...|.+++. .-+|.+.++++.++.+..
T Consensus 170 ~~~vvD~v~s-~g~~--~id~~~~--~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (401)
T PLN02409 170 ALLLVDGVSS-IGAL--DFRMDEW--GVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKL 243 (401)
T ss_pred cEEEEEcccc-cCCc--ccccccc--CccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhc
Confidence 9999999995 4321 1112223 35666 467988764 137778888887654321
Q ss_pred C-----hH-------------HHH---------------HHHHHHHHcCCC--eeEE-E-eeeeEEEEEEecCcccCCCc
Q 003466 714 D-----SK-------------LWD---------------LELIQQISSHRT--VQRV-V-ALGTLCAIELQAAGCNAGYG 756 (818)
Q Consensus 714 ~-----~~-------------~~~---------------~~l~~~l~~~~~--v~~v-r-g~Gl~~~iel~~~~~~~~~~ 756 (818)
+ .. .+. +.+.+.++..+. +..- . ..+.+..+.+...
T Consensus 244 g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~------- 316 (401)
T PLN02409 244 GTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEG------- 316 (401)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCC-------
Confidence 0 00 000 112233333321 1110 0 1223333433211
Q ss_pred hHHHHHHHHHHH-hCCceEee-----cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 757 SLYAASLLKKLR-EDGVYMRP-----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 757 ~~~a~~~~~~l~-e~Gvlv~p-----~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+.+.|. +.|+.+.. .+..+|+...-.++++|+..++++|+++|.++.
T Consensus 317 -~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 317 -IDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred -CCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 12345666665 66999985 357899999999999999999999999998764
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-06 Score=100.03 Aligned_cols=312 Identities=11% Similarity=0.059 Sum_probs=167.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhcc--CCCCCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV--GKGWASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~--~~~~l~~v~f~~SGseA~e~A 477 (818)
..+|+..|.- ..+++...+++.+++.+.+.....+....+..+....+|+.+.... +-. .+.+++++++++++..+
T Consensus 34 ~~i~l~~g~p-~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~-~~~i~~t~G~~~~l~~~ 111 (404)
T PRK09265 34 KILKLNIGNP-APFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVD-VDDIYIGNGVSELIVMA 111 (404)
T ss_pred CeEEecCCCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCC-cccEEEeCChHHHHHHH
Confidence 5677766532 2456543678999988766543222212233345556666654321 111 35789998888988888
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.. -..| ..|++.+.+|.+.... +...|..
T Consensus 112 ~~~~-----~~~g----------------d~Vlv~~p~y~~~~~~-~~~~g~~--------------------------- 142 (404)
T PRK09265 112 MQAL-----LNNG----------------DEVLVPAPDYPLWTAA-VSLSGGK--------------------------- 142 (404)
T ss_pred HHHh-----CCCC----------------CEEEEeCCCCcChHHH-HHHcCCE---------------------------
Confidence 8755 1122 3688877777653321 1111111
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCcc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMH 636 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~~g~gG~~ 636 (818)
.+.+|. |.+..|. .+ .+.+++.+. .++.+ +++-| ++-.|.+
T Consensus 143 ---~v~~~~---------------~~~~~~~--~d--------~~~l~~~~~--------~~~~~v~l~~P--~NPtG~~ 184 (404)
T PRK09265 143 ---PVHYLC---------------DEEAGWF--PD--------LDDIRSKIT--------PRTKAIVIINP--NNPTGAV 184 (404)
T ss_pred ---EEEEec---------------ccccCCC--CC--------HHHHHHhcc--------ccceEEEEECC--CCCCCcC
Confidence 001110 0000000 00 144555443 23444 44555 6777876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc--E---EEeccccc-CCccccceeec--chH--
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD--I---ACYGKLLT-GGVIPLAATLA--TNA-- 706 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD--i---vtlgKgLg-gGy~PlsAvl~--~~~-- 706 (818)
. +.+-+++|.++|++||+++|.||++..|-..+.... ......++ + -+|||.++ .| +-+|.+++ +++
T Consensus 185 ~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~ 261 (404)
T PRK09265 185 Y-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHI-SIASLAPDLLCVTFNGLSKAYRVAG-FRVGWMVLSGPKKHA 261 (404)
T ss_pred C-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcC-CHHHcCCCceEEEEecchhhccCcc-cceEEEEEeCchHHH
Confidence 6 778899999999999999999999987632232110 00112233 2 25899995 56 78888885 332
Q ss_pred --HHhhcc---C----C-h--H-----HHH-------------------HHHHHHHHcCCCeeEEEee-eeEEEEEEecC
Q 003466 707 --VFDSFV---G----D-S--K-----LWD-------------------LELIQQISSHRTVQRVVAL-GTLCAIELQAA 749 (818)
Q Consensus 707 --i~~~l~---~----~-~--~-----~~~-------------------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~ 749 (818)
+.+.+. . . . . .+. +.+.+.++.++.+.-+... |+++-+.+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~ 341 (404)
T PRK09265 262 KGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPK 341 (404)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEeccc
Confidence 322211 0 0 0 0 000 0122334444433222233 45554555422
Q ss_pred cccCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 750 GCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 750 ~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
... .. .....+.+.|.++||++.|+ .+.+|+.. ..+++++++.+++|.++++..
T Consensus 342 ~~~-~~--~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 342 VYP-IH--DDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred ccC-CC--CHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHh
Confidence 000 00 12334667788999999873 25677776 367899999999999888654
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.5e-07 Score=98.81 Aligned_cols=289 Identities=15% Similarity=0.157 Sum_probs=176.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
..+|+.++ -+.+|-. |++.+++.+.++.+..+ ..+...+|.+.+++..+....+.|+.+|+..|..+..++
T Consensus 23 ~~i~LssN--enP~gp~--~~~~~~~~~~~~~~~rY-----Pd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~ 93 (356)
T COG0079 23 GIIKLSSN--ENPYGPP--PKVIEAIRAALDKLNRY-----PDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVR 93 (356)
T ss_pred cceeecCC--CCCCCCC--HHHHHHHHHHHHhhccC-----CCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHH
Confidence 46777663 4456643 89999999887744322 233467888888887762113578888888888887777
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
+. ...| .+|+....+|.-....+...+ .+ .
T Consensus 94 ~~-----~~~g----------------d~vl~~~Ptf~~Y~~~a~~~g-~~----------------------------~ 123 (356)
T COG0079 94 AF-----VEPG----------------DTVLIPEPTFSMYEIAAQLAG-AE----------------------------V 123 (356)
T ss_pred Hh-----hcCC----------------CEEEEcCCChHHHHHHHHhcC-Ce----------------------------E
Confidence 65 1111 478888777754332222211 11 0
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEEccccccCCCcccC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI-GALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~i-AAVIvEPV~~g~gG~~~~ 638 (818)
+.++..+ |. .| .+.+...+. ++. ..+|..| .+-.|...
T Consensus 124 ~~v~~~~-~~-----------~d------------------~~~~~~~~~--------~~~~lv~i~nP--NNPTG~~~- 162 (356)
T COG0079 124 VKVPLKE-FR-----------LD------------------LDAILAAIR--------DKTKLVFLCNP--NNPTGTLL- 162 (356)
T ss_pred EEecccc-cc-----------cC------------------HHHHHHhhh--------cCCCEEEEeCC--CCCCCCCC-
Confidence 1111111 10 01 122323332 123 3666678 46677766
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc-EE---Eeccccc-CCccccceeecchHHHhhccC
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv---tlgKgLg-gGy~PlsAvl~~~~i~~~l~~ 713 (818)
+.+-++++.+.|.+ ++++|+||+..-|+. --...... .++ ++ ||||+.| .| +-+|.+++++++++.+..
T Consensus 163 ~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~---~~~~~l~~-~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~ 236 (356)
T COG0079 163 PREELRALLEALPE-GGLVVIDEAYIEFSP---ESSLELLK-YPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNK 236 (356)
T ss_pred CHHHHHHHHHhCCC-CcEEEEeCchhhcCC---chhhhhcc-CCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHH
Confidence 67777888888888 999999999988855 11222222 344 44 8999777 45 688889999999987753
Q ss_pred ChH------------------------------HHHHHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCCCchHHHHH
Q 003466 714 DSK------------------------------LWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 714 ~~~------------------------------~~~~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
-.. ..++++.+.++.++ +..|.. .+-++-+.+... . +..
T Consensus 237 vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~aNFvlv~~~~~--------~-~~~ 306 (356)
T COG0079 237 VRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG-LFGVFPSQANFVLVRVPDA--------E-AAA 306 (356)
T ss_pred hcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcEEEEECCCc--------c-HHH
Confidence 211 11123455566665 332322 244444444321 4 567
Q ss_pred HHHHHHhCCceEeecC------CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~g------~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+.+.|+++||+++... +.+|++.. |++|-++++++|.++++.
T Consensus 307 l~~~L~~~giivR~~~~~~~~~~~lRitvg---t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 307 LAEALLKKGILVRDCSSVGLLPGYLRITVG---TPEENDRLLAALREVLKG 354 (356)
T ss_pred HHHHHHHCCEEEEeCCCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence 8999999999999753 37888764 577779999999888754
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-06 Score=98.21 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=106.1
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCcc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~ 696 (818)
+.++.-| +.-.|... +.+-+++|.++|++||+++|+||+..+|.-.+.... .....++++ ++||.++ .| +
T Consensus 166 ~v~l~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~vi~~~S~SK~~~~~G-~ 239 (388)
T PRK07337 166 GVLLASP--SNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVS--ALSLGDDVITINSFSKYFNMTG-W 239 (388)
T ss_pred EEEEECC--CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcC--hhhccCCEEEEEechhhcCCch-h
Confidence 3444445 67777666 788899999999999999999999987754443111 112234554 6899996 56 6
Q ss_pred ccceeecchHHHhhccCCh--------H--------H--------HH----------HHHHHHHHcCCCeeEEE-eeeeE
Q 003466 697 PLAATLATNAVFDSFVGDS--------K--------L--------WD----------LELIQQISSHRTVQRVV-ALGTL 741 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~--------~--------~--------~~----------~~l~~~l~~~~~v~~vr-g~Gl~ 741 (818)
-+|.+++++++++.+.... . . +. +.+.+.++.++....+. ..|.+
T Consensus 240 RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f 319 (388)
T PRK07337 240 RLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFY 319 (388)
T ss_pred heeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEE
Confidence 7888999988876553211 0 0 00 11223344443321122 34566
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHH-HhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l-~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+-+++..... ++......++..+ .++||.+.|+ .+.+|++... +++++.+.+++|.+++
T Consensus 320 ~~~~~~~~~~---~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~--~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 320 VYADCRGVAH---PAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT--SMSRLEEAVARLGKLF 387 (388)
T ss_pred EEEecccccC---CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC--CHHHHHHHHHHHHHHh
Confidence 6666643100 0001245677665 5789999862 2467777763 6888999998887754
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-07 Score=106.35 Aligned_cols=171 Identities=15% Similarity=0.095 Sum_probs=106.2
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
...++...+|+++|+++.|. +.++.++||.+|+..++.... +.| ..||+....|++
T Consensus 60 r~~~p~~~~le~~lA~l~g~---~~~i~~ssG~~Ai~~~l~all-----~~G----------------D~Vi~~~~~y~~ 115 (398)
T PRK08249 60 RNTNPTVQAFEEKVRILEGA---EAATAFSTGMAAISNTLYTFL-----KPG----------------DRVVSIKDTYGG 115 (398)
T ss_pred CCCChHHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc-----CCC----------------CEEEEcCCchHH
Confidence 34578889999999999874 578888999999998887541 222 268888888765
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.. ..+... .+ ..|.. ...++ ..|
T Consensus 116 ~~-~~~~~~-~~------------~~Gi~-------------v~~vd--------------~~d---------------- 138 (398)
T PRK08249 116 TN-KIFTEF-LP------------RMGVD-------------VTLCE--------------TGD---------------- 138 (398)
T ss_pred HH-HHHHHH-Hh------------hCCeE-------------EEEcC--------------CCC----------------
Confidence 31 111000 00 00000 00000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.|. .++.+|++|.. .+..|.+.+ +++|.++|++||+++|+||++..+ -.+. ..
T Consensus 139 --~e~l~~~i~--------~~tklV~ie~p-~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~-~~~~-----~l 197 (398)
T PRK08249 139 --HEQIEAEIA--------KGCDLLYLETP-TNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP-INQN-----PL 197 (398)
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----ch
Confidence 144555553 24678999875 677787775 899999999999999999998632 1111 11
Q ss_pred CCCCcEE--EecccccCCcccc-ceeecchHHHhhc
Q 003466 679 GCVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSF 711 (818)
Q Consensus 679 gv~PDiv--tlgKgLggGy~Pl-sAvl~~~~i~~~l 711 (818)
....|++ .++|.++|.-..+ |++++++++++.+
T Consensus 198 ~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l 233 (398)
T PRK08249 198 ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQV 233 (398)
T ss_pred hhCCCEEeccCceecCCCCCceEEEEECCHHHHHHH
Confidence 2246766 5789998621223 5566778777654
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-06 Score=98.78 Aligned_cols=279 Identities=17% Similarity=0.154 Sum_probs=158.6
Q ss_pred CHHHHHHHHHhhhhccccc--C-CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccccc
Q 003466 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~--~-~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~ 494 (818)
.+++.+|+.+.+..+.... . .+...+...++++.|++++|. +.+++++||+.|+..++... ..|
T Consensus 99 ~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga---e~a~vv~sgtaAl~l~l~~l------~~G---- 165 (464)
T PRK04311 99 SEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA---EDALVVNNNAAAVLLALNAL------AAG---- 165 (464)
T ss_pred CHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHh------CCC----
Confidence 6889999999887654211 1 112234567889999999884 57889999999998888543 112
Q ss_pred ccCCCccccccceEEEEEcCC-CC-CCccc---cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhh
Q 003466 495 FLGKDTTEKCIELKVLALKGS-YH-GDTLG---AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~s-YH-G~t~~---als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~ 569 (818)
..||+.++. || |.+.. .+...|.. .+.++
T Consensus 166 ------------deVIvs~~e~~~~ggs~~i~~~~~~~G~~------------------------------l~~v~---- 199 (464)
T PRK04311 166 ------------KEVIVSRGELVEIGGAFRIPDVMRQAGAR------------------------------LVEVG---- 199 (464)
T ss_pred ------------CEEEEcchhhhhcCcchhhHHHHHHCCcE------------------------------EEEEC----
Confidence 357776653 43 22110 01111100 00000
Q ss_pred hhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc--CCC--cccCCHHHHHH
Q 003466 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA--AGG--MHMVDPLFQRI 645 (818)
Q Consensus 570 ~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g--~gG--~~~~p~~fl~~ 645 (818)
+++. .. .+.+++.|. +++++|+++-. .+ ..| ..++ +++
T Consensus 200 ----------~~~~----------t~-----~~dle~aI~--------~~TklV~~vh~-sN~~i~G~~~~~d----l~e 241 (464)
T PRK04311 200 ----------TTNR----------TH-----LRDYEQAIN--------ENTALLLKVHT-SNYRIEGFTKEVS----LAE 241 (464)
T ss_pred ----------CCCC----------CC-----HHHHHHhcC--------ccCeEEEEEcC-CCccccccCCcCC----HHH
Confidence 1110 00 144566663 34677777764 32 123 2333 999
Q ss_pred HHHHHHhcCCcEEEeecccCcccCC---ccc------hhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccCC
Q 003466 646 LVKECQNRKIPVIFDEVFTGFWRLG---VET------TADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD 714 (818)
Q Consensus 646 LreLc~~~gilLI~DEV~TGfGRtG---~~~------a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~~ 714 (818)
|.++|++||+++|+|.. .|-.| .++ ..+....-.|++++| |.|||.. .|++++++++++.+...
T Consensus 242 I~~lak~~gi~vivD~g---sG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~--~G~i~g~~~li~~l~~~ 316 (464)
T PRK04311 242 LAALGKEHGLPVVYDLG---SGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ--AGIIVGKKELIARLKKH 316 (464)
T ss_pred HHHHHHHcCCeEEEECC---CcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc--eEEEEEcHHHHHHHhhc
Confidence 99999999999999984 33333 221 111122347999998 9998752 66688899888766531
Q ss_pred hH--------------------H------H-------------------HHHHHHHHHcCC--Ce-eEEE------eeee
Q 003466 715 SK--------------------L------W-------------------DLELIQQISSHR--TV-QRVV------ALGT 740 (818)
Q Consensus 715 ~~--------------------~------~-------------------~~~l~~~l~~~~--~v-~~vr------g~Gl 740 (818)
.. + + .+.+.+.|+.++ .+ ..+. |-|.
T Consensus 317 ~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs 396 (464)
T PRK04311 317 PLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGS 396 (464)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCC
Confidence 11 0 0 011223333332 11 1111 2222
Q ss_pred E-------EEEEEecCcccCCCchHHHHHHHHHHHh--CCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 741 L-------CAIELQAAGCNAGYGSLYAASLLKKLRE--DGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 741 ~-------~~iel~~~~~~~~~~~~~a~~~~~~l~e--~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+ +++.+... ...+..+.++|++ -.|+.+...+.+.+-+ -++.++|++.+++++.+.+.
T Consensus 397 ~p~~~~~~~~v~~~~~-------~~~~~~l~~~lr~~~~~i~~r~~~~~~~ld~-r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 397 LPVDRLPSAAVTLTPK-------DRSLEALAARLRLLPPPVIGRIEDGRLLLDL-RTLEEEDEERLAAALLEALN 463 (464)
T ss_pred CcCCCCCeEEEEEeCC-------CCCHHHHHHHHhcCCCCEEEEEECCEEEEEe-CcCCHHHHHHHHHHHHHHhh
Confidence 2 22222211 1235677788875 5688888778887765 45678999999999988753
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.8e-07 Score=97.19 Aligned_cols=270 Identities=15% Similarity=0.104 Sum_probs=156.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+..+. +.+ . +|.+.+|+.+.++..... +....|.+.+++..+ +.++.++++++|...++.
T Consensus 9 ~~i~l~~~~--np~--~-p~~~~~a~~~~~~~~~~y-------p~~~~l~~~ia~~~~----~~I~vt~G~~~al~~~~~ 72 (311)
T PRK08354 9 GLIDFSASV--NPY--P-PEWLDEMFERAKEISGRY-------TYYEWLEEEFSKLFG----EPIVITAGITEALYLIGI 72 (311)
T ss_pred ceeEecCCC--CCC--C-CHHHHHHHHHHHHHhhcC-------CChHHHHHHHHHHHC----CCEEECCCHHHHHHHHHH
Confidence 688988642 344 4 789999998876653221 123567788888776 478999999999887664
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
+. . .| ..|++.+-+|.+....+. ..|...
T Consensus 73 ~~-----~-~g----------------d~vlv~~P~y~~~~~~~~-~~g~~~---------------------------- 101 (311)
T PRK08354 73 LA-----L-RD----------------RKVIIPRHTYGEYERVAR-FFAARI---------------------------- 101 (311)
T ss_pred hh-----C-CC----------------CeEEEeCCCcHHHHHHHH-HcCCEE----------------------------
Confidence 33 1 22 367777777766432211 111110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
+..| .| .+.+++.+. ..+ ..++.-| ++-.|... +
T Consensus 102 --~~~~---------------~d------------------~~~l~~~~~-------~~~-~vi~~~P--~NPTG~~~-~ 135 (311)
T PRK08354 102 --IKGP---------------ND------------------PEKLEELVE-------RNS-VVFFCNP--NNPDGKFY-N 135 (311)
T ss_pred --eecC---------------CC------------------HHHHHHhhc-------CCC-EEEEecC--CCCCCCcc-C
Confidence 0000 01 134444442 122 4777788 67778766 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc-E---EEeccccc-CCccccceeecchHHHhhccCC
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-I---ACYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-i---vtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~ 714 (818)
.+-+++|.++|++||+++|.||++..|..-+.. ..++ + -+|||.++ .| +.+|.+++-.+.+......
T Consensus 136 ~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-------~~~~~vi~~~S~SK~~~l~G-lRiG~~v~~~~~l~~~~~~ 207 (311)
T PRK08354 136 FKELKPLLDAVEDRNALLILDEAFIDFVKKPES-------PEGENIIKLRTFTKSYGLPG-IRVGYVKGFEEAFRSVRMP 207 (311)
T ss_pred HHHHHHHHHHhhhcCcEEEEeCcchhccccccc-------cCCCcEEEEeccHhhcCCcc-ceeeeeeehHHHHHHcCCC
Confidence 899999999999999999999999887322211 1122 2 37999998 77 6888888733333222111
Q ss_pred ---hH--------HHHH---H-------HHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCce
Q 003466 715 ---SK--------LWDL---E-------LIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY 773 (818)
Q Consensus 715 ---~~--------~~~~---~-------l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvl 773 (818)
.. .+.. . +.+..+...........|.++-+++. + +..+++.|.++||+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~----------~~~~~~~l~~~gv~ 276 (311)
T PRK08354 208 WSIGSTGYAFLEFLIEDDFEHLRKTMPLIWREKERFEKALYVKSDANFFIKDVG-D----------AEKFVEFLKRNGIL 276 (311)
T ss_pred ccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEECC-C----------HHHHHHHHHHCCeE
Confidence 00 1100 0 11111111111112234444434432 1 34678889999999
Q ss_pred EeecC-----CEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 774 MRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 774 v~p~g-----~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
++++. +.+|+... +.++.+++++++++.
T Consensus 277 v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~ 309 (311)
T PRK08354 277 VRDCTSFGLPGYIRFSVR---DREENEKLIRALREW 309 (311)
T ss_pred EEecccCCCCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence 99842 56777664 355667777666553
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-07 Score=101.85 Aligned_cols=284 Identities=15% Similarity=0.086 Sum_probs=173.7
Q ss_pred cCCCCCCHHHHHHHHHhhhhccccc---CCCC---CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHh
Q 003466 412 GPDATLQIELARDMGYTAARFGHVM---FPEN---VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 412 ~lGh~~hp~V~eAi~~q~~~~~~~~---~~~~---~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~ 485 (818)
..|.. .+.|.+++.+.+..+.... .... ..+...+..+.|+++++.+.-+.++|++++++|++.++.......
T Consensus 7 ~~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~ 85 (371)
T PF00266_consen 7 GTGPM-PKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPL 85 (371)
T ss_dssp SS-B--BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CccCC-CHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccc
Confidence 35666 8899999999877643211 1111 134556777888888875421579999999999999998772111
Q ss_pred hhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc
Q 003466 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (818)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (818)
....+|++....|++.......+.. + .|. .+..++.+
T Consensus 86 ------------------~~g~~vl~~~~~~~s~~~~~~~~~~----~----------~g~-----------~v~~i~~~ 122 (371)
T PF00266_consen 86 ------------------KPGDEVLVTSNEHPSNRYPWEEIAK----R----------KGA-----------EVRVIPAD 122 (371)
T ss_dssp ------------------TTTCEEEEEESSHHHHHHHHHHHHH----H----------TTE-----------EEEEEEEG
T ss_pred ------------------ccccccccccccccccccccccccc----c----------chh-----------hhcccccc
Confidence 1234788988888875411111110 0 000 00011111
Q ss_pred chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003466 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (818)
Q Consensus 566 ~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~ 645 (818)
.. .. .+ .+.+++.|. .++..|++--+ ....|.+.| +++
T Consensus 123 ~~-------------~~--------~~--------~~~~~~~l~--------~~~~lv~~~~~-~~~tG~~~p----i~~ 160 (371)
T PF00266_consen 123 PG-------------GS--------LD--------LEDLEEALN--------PDTRLVSISHV-ENSTGVRNP----IEE 160 (371)
T ss_dssp TT-------------SS--------CS--------HHHHHHHHH--------TTESEEEEESB-ETTTTBBSS----HHH
T ss_pred cc-------------ch--------hh--------hhhhhhhhc--------cccceEEeecc-cccccEEee----ece
Confidence 00 00 00 255666664 46777877776 777899887 999
Q ss_pred HHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHHhhccCC----h----
Q 003466 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGD----S---- 715 (818)
Q Consensus 646 LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~~~----~---- 715 (818)
|.++|+++|+++++|=+| ++|..- .-.+. ..+|+++ .-| |+|+ --+|.+..+++..+.+.+. .
T Consensus 161 I~~~~~~~~~~~~vD~~~-~~g~~~--id~~~--~~~D~~~~s~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~ 233 (371)
T PF00266_consen 161 IAKLAHEYGALLVVDAAQ-SAGCVP--IDLDE--LGADFLVFSSHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDF 233 (371)
T ss_dssp HHHHHHHTTSEEEEE-TT-TTTTSS----TTT--TTESEEEEESTS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTH
T ss_pred ehhhhhccCCceeEechh-cccccc--ccccc--cccceeeecccc-cCCC-Cchhhheehhhhhhcccccccccccccc
Confidence 999999999999999998 454331 22233 3468875 458 8876 3478888899777655210 0
Q ss_pred -------------------H-------------HH---------------HHHHHHHHHcCCCeeE-----EEeeeeEEE
Q 003466 716 -------------------K-------------LW---------------DLELIQQISSHRTVQR-----VVALGTLCA 743 (818)
Q Consensus 716 -------------------~-------------~~---------------~~~l~~~l~~~~~v~~-----vrg~Gl~~~ 743 (818)
. .+ .+.+.+.+.+.+.+.- -...+.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 313 (371)
T PF00266_consen 234 PSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVS 313 (371)
T ss_dssp HHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEE
T ss_pred ccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEE
Confidence 0 01 1123445555665321 123466777
Q ss_pred EEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHHHHH
Q 003466 744 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQL 797 (818)
Q Consensus 744 iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~ 797 (818)
+.+... .+..+.+.|.++||.++.+ +..+|+++....|++|||++
T Consensus 314 ~~~~~~---------~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 314 FNLPGS---------DADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp EEETTS---------SHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred EeecCC---------CHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 777332 2467888899899999872 26999999999999999975
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-06 Score=95.18 Aligned_cols=296 Identities=13% Similarity=0.031 Sum_probs=164.0
Q ss_pred CHHHHHHHHHhhhhc--ccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhccccccc
Q 003466 418 QIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~ 494 (818)
.|.+.+|+.+.++.. ..+....+..+....+++.+....+.+ .-+.+++++++++|...+++.. ...|
T Consensus 51 p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l-----~~~g---- 121 (409)
T PLN00143 51 TNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVL-----ARPE---- 121 (409)
T ss_pred CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHH-----cCCC----
Confidence 677889888877642 222122344566677777776543211 1257999999999999988865 1222
Q ss_pred ccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC-c-chhhhhc
Q 003466 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-P-EWLYSKI 572 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~-P-~~~~~~~ 572 (818)
..|+..+-+|.+....+. ..|... ..+++ + +.+.
T Consensus 122 ------------d~v~v~~P~y~~~~~~~~-~~g~~~----------------------------~~~~~~~~~~~~--- 157 (409)
T PLN00143 122 ------------ANILLPRPGFPDVETYAI-FHHLEI----------------------------RHFDLLPEKGWE--- 157 (409)
T ss_pred ------------CEEEEcCCCCcCHHHHHH-HcCCEE----------------------------EEEeccCCCCCc---
Confidence 368888888876432211 111110 00000 0 0000
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh
Q 003466 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (818)
Q Consensus 573 ~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~ 652 (818)
-| .+.+++.+. ....+.+++-| ++-.|.+. +.+-+++|.++|++
T Consensus 158 --------~d------------------~~~l~~~~~-------~~~~~~~~~nP--~NPTG~~~-s~~~~~~l~~~a~~ 201 (409)
T PLN00143 158 --------VD------------------LDAVEAIAD-------ENTIAMVIINP--GNPCGSVY-SYEHLNKIAETARK 201 (409)
T ss_pred --------CC------------------HHHHHHhcc-------cCCEEEEEECC--CCCCCCcc-CHHHHHHHHHHHHH
Confidence 01 145555543 23456777778 67778777 78899999999999
Q ss_pred cCCcEEEeecccCcccCCccc-hhcccCCCCcE---EEecccc-cCCccccceeecc-h-HH------Hhhcc------C
Q 003466 653 RKIPVIFDEVFTGFWRLGVET-TADLLGCVPDI---ACYGKLL-TGGVIPLAATLAT-N-AV------FDSFV------G 713 (818)
Q Consensus 653 ~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDi---vtlgKgL-ggGy~PlsAvl~~-~-~i------~~~l~------~ 713 (818)
||+++|.||++..|-..|..+ ....+.-.+.+ -+|||.. ..| +-+|.++++ + .+ ++.+. .
T Consensus 202 ~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG-lRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 280 (409)
T PLN00143 202 LGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPG-WGLGWLVTCDPSGLLQICEIADSIKKALNPAP 280 (409)
T ss_pred cCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCc-cceEEEEeeCchhhhhhHHHHHHHHHHHhccC
Confidence 999999999998763333321 11112111122 3799994 456 789988883 2 22 22111 0
Q ss_pred C-hH--------HHH-------H-----------HHHHHHHcCCCeeE-EEe-eeeEEEEEEecCcccCCCchHHHHHHH
Q 003466 714 D-SK--------LWD-------L-----------ELIQQISSHRTVQR-VVA-LGTLCAIELQAAGCNAGYGSLYAASLL 764 (818)
Q Consensus 714 ~-~~--------~~~-------~-----------~l~~~l~~~~~v~~-vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~ 764 (818)
. .. .+. + .+.+.+.+++.... ... -|.++-+.+.... . .+......++
T Consensus 281 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~-~--~~~~~~~~~~ 357 (409)
T PLN00143 281 FPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLL-L--EDIEDDMEFC 357 (409)
T ss_pred CCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhh-c--CCCCCHHHHH
Confidence 0 00 111 0 11222333332211 122 2555555553210 0 0000133454
Q ss_pred -HHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 765 -KKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 765 -~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.+.++||++.|+ .+.+|+... .+++++++.+++|.+.++..
T Consensus 358 ~~ll~~~gV~v~pg~~f~~~~~iRi~~~--~~~~~l~~al~rl~~~l~~~ 405 (409)
T PLN00143 358 LKLAKEESLIILPGVTVGLKNWLRITFA--VEQSSLEDGLGRLKSFCGRH 405 (409)
T ss_pred HHHHHhCCEEEeCccccCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHHh
Confidence 4457899999984 256777765 45899999999999887653
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-06 Score=96.99 Aligned_cols=178 Identities=12% Similarity=0.115 Sum_probs=105.4
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc--E---EEeccccc-CC
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD--I---ACYGKLLT-GG 694 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD--i---vtlgKgLg-gG 694 (818)
.+|++.-- ++-.|... +.+-+++|.++|+++|+++|+||++..|-..|..+. ......|+ + -+|||..+ .|
T Consensus 170 ~~v~~~~p-~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~G 246 (401)
T TIGR01264 170 AALIVNNP-SNPCGSVF-SRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWLVPG 246 (401)
T ss_pred eEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCCCcc
Confidence 45555432 67777765 788999999999999999999999988744443211 11122232 3 37999843 55
Q ss_pred ccccceeecch------HHHhhccC------C-hH--------HHH------------------HHHHHHHHcCCCeeEE
Q 003466 695 VIPLAATLATN------AVFDSFVG------D-SK--------LWD------------------LELIQQISSHRTVQRV 735 (818)
Q Consensus 695 y~PlsAvl~~~------~i~~~l~~------~-~~--------~~~------------------~~l~~~l~~~~~v~~v 735 (818)
+-+|.+++++ ++++.+.. . .. .+. +.+.+.|+.++.+.-+
T Consensus 247 -lRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~ 325 (401)
T TIGR01264 247 -WRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPV 325 (401)
T ss_pred -ceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 6888888763 34332210 0 00 111 1123344555433222
Q ss_pred -EeeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 736 -VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 736 -rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
-..|.++-+.+.... .++......++..|+ ++||++.|+ .+.+|++.. ..++++++.+++|.+.+++
T Consensus 326 ~p~~g~f~~~~~~~~~---~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~--~~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 326 MPSGAMYMMVGIEMEH---FPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLT--VPVVMMEEACSRIQEFCER 399 (401)
T ss_pred CCCeeeEEEEEecccc---cCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEc--CCHHHHHHHHHHHHHHHhc
Confidence 234666666654210 000012356777776 789999873 266777765 4588999999999888754
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-07 Score=105.10 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=103.2
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++++++.+. +.++.++||++|+..++...+ ..| ..||+...+|++
T Consensus 50 ~~np~~~~lE~~lA~l~g~---~~~l~~~sG~~Ai~~~l~~ll-----~~G----------------D~Vlv~~~~y~~- 104 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGG---VDALAFNSGMAAISTLFFSLL-----KAG----------------DRVVLPMEAYGT- 104 (385)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEcCCCchh-
Confidence 4467788999999999874 577888999999999987551 122 256766666655
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
+...+... .. . +. . + .+-+. +
T Consensus 105 ~~~~~~~~--~~--~----------g~----~----------v----------------~~~~~--------d------- 125 (385)
T PRK08574 105 TLRLLKSL--EK--F----------GV----K----------V----------------VLAYP--------S------- 125 (385)
T ss_pred HHHHHHHh--hc--c----------Cc----E----------E----------------EEECC--------C-------
Confidence 32222110 00 0 00 0 0 00000 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. +.++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||+++ .|-..+.. .+|
T Consensus 126 -~~~l~~~i~-------~~~tklV~ie~p-~NPtG~v~d----l~~I~~la~~~gi~livD~t~a-~~~~~~~l---~~G 188 (385)
T PRK08574 126 -TEDIIEAIK-------EGRTKLVFIETM-TNPTLKVID----VPEVAKAAKELGAILVVDNTFA-TPLLYRPL---RHG 188 (385)
T ss_pred -HHHHHHhcC-------ccCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCC-ccccCChh---hhC
Confidence 144555553 225778999986 777787775 8899999999999999999993 22121111 234
Q ss_pred CCCcEE--EecccccC-Cccccceeec-chHHHhhc
Q 003466 680 CVPDIA--CYGKLLTG-GVIPLAATLA-TNAVFDSF 711 (818)
Q Consensus 680 v~PDiv--tlgKgLgg-Gy~PlsAvl~-~~~i~~~l 711 (818)
.|++ .++|.++| |-.-.|++++ ++++++.+
T Consensus 189 --aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~ 222 (385)
T PRK08574 189 --ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEEL 222 (385)
T ss_pred --CcEEEeeCceeecCCCCceeEEEEECcHHHHHHH
Confidence 4766 68899976 3112343444 56666543
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-07 Score=105.75 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=105.3
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.+++++||++|+..++.... +.| ..||+....|+|.
T Consensus 55 ~~~pt~~~Le~~lA~l~g~---~~~l~~ssG~~Ai~~al~al~-----~~G----------------d~Vl~~~~~Y~~t 110 (425)
T PRK06084 55 IMNPTNDVLEQRVAALEGG---VGALAVASGMAAITYAIQTIA-----EAG----------------DNIVSVAKLYGGT 110 (425)
T ss_pred CCCchHHHHHHHHHHHhCC---CceeEehhHHHHHHHHHHHHh-----CCC----------------CEEEEeCCCcchH
Confidence 4467788999999998873 577888999999999998652 222 2688888889873
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
...+... .+ + .+. . + ..+ ..+|
T Consensus 111 -~~~~~~~-l~--~----------~gi----~-v------~~~----------------d~~d----------------- 132 (425)
T PRK06084 111 -YNLLAHT-LP--R----------IGI----E-T------RFA----------------AHDD----------------- 132 (425)
T ss_pred -HHHHHHh-cc--c----------cee----E-E------EEE----------------CCCC-----------------
Confidence 2322210 00 0 000 0 0 000 0112
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. .++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||++. .+... ....
T Consensus 133 -~e~le~ai~--------~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~~~~-----~p~~ 192 (425)
T PRK06084 133 -IAALEALID--------ERTKAVFCESI-GNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TPVLC-----RPFE 192 (425)
T ss_pred -HHHHHHHhc--------cCCcEEEEeCC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Chhh
Confidence 145666664 24678999986 788888775 8999999999999999999994 32222 1223
Q ss_pred CCCcEE--EecccccCCccccceeec
Q 003466 680 CVPDIA--CYGKLLTGGVIPLAATLA 703 (818)
Q Consensus 680 v~PDiv--tlgKgLggGy~PlsAvl~ 703 (818)
.-+|++ .++|.++|.--.+|.+++
T Consensus 193 ~gaDivv~S~tK~l~G~g~~~gG~v~ 218 (425)
T PRK06084 193 HGADIVVHSLTKYIGGHGTSIGGIVV 218 (425)
T ss_pred cCCCEEEECchhcccccccceeEEEE
Confidence 347776 689999863245665555
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.7e-07 Score=100.04 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=111.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCcc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~ 696 (818)
..+++-| ++-.|.+. +.+.++++.+.|.++++++|+||++..|.. ..- .....+ .++++ +|||.+| .| +
T Consensus 133 ~v~l~nP--nNPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~-~~s-~~~~~~-~~~vi~l~SfSK~~gl~G-l 205 (339)
T PRK06959 133 HLIVVNP--NNPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLP-AAS-LAAHTD-RPGLVVLRSVGKFFGLAG-V 205 (339)
T ss_pred EEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCC-ccc-chhccC-CCCEEEEecChhhcCCcc-h
Confidence 4778888 57778766 677788898889999999999999977632 111 111111 24433 8999998 77 7
Q ss_pred ccceeecchHHHhhccCChH--------------H----------------HHHHHHHHHHcCCCeeEEEeeeeEEEEEE
Q 003466 697 PLAATLATNAVFDSFVGDSK--------------L----------------WDLELIQQISSHRTVQRVVALGTLCAIEL 746 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~~--------------~----------------~~~~l~~~l~~~~~v~~vrg~Gl~~~iel 746 (818)
-+|.+++++++++.+..... . .++.+.+.+++++. .+...+.++-+.+
T Consensus 206 RiGy~v~~~~li~~l~~~~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~--~~~~~~~f~~~~~ 283 (339)
T PRK06959 206 RAGFVLAAPALLAALRDALGAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAHGF--AVHATPLFSWTDD 283 (339)
T ss_pred heEEEecCHHHHHHHHHhcCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCC--CccCcceEEEEeC
Confidence 99999999999886643211 0 01123344555432 1222343333332
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
. + +..+.+.|.++||+++..+ +.+|++.. -+++|.++++++|++.++.+++.
T Consensus 284 ~-~----------~~~l~~~l~~~GI~vr~~~~~~~lRisi~--~~~~e~~~l~~al~~~~~~~~~~ 337 (339)
T PRK06959 284 P-R----------AAALHAALARRGIWTRYFAPPPSVRFGLP--ADEAEWQRLEDALAECVPTLAAA 337 (339)
T ss_pred C-C----------HHHHHHHHHhCCeEEEECCCCCeEEEECC--CCHHHHHHHHHHHHHHHHHHhhc
Confidence 1 1 4568899999999999754 57787743 46789999999999988887653
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=109.07 Aligned_cols=278 Identities=14% Similarity=0.138 Sum_probs=156.3
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEE-EeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 442 YEPALECAELLLQGVGKGWASRAY-FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~-f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.+...++.++|++++|. +.+. ..++|+.|+.++|..+ |.|...+|+ .+ +.+|....+-||+.
T Consensus 541 l~~i~e~q~~l~eltG~---d~~sl~~~~ga~ge~agL~a~-r~~~~~~G~------------~~-r~~vlis~~aH~sn 603 (954)
T PRK05367 541 RELIDQLEAWLAEITGY---DAVSLQPNAGAQGEYAGLLAI-RAYHESRGE------------GH-RDVCLIPSSAHGTN 603 (954)
T ss_pred HHHHHHHHHHHHHHHCC---CCEEECccHHHHHHHHHHHHH-HHHhhccCC------------CC-CCEEEEEchhhhhh
Confidence 35567889999999984 4454 4557888888888655 766554443 22 34566778889877
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
..++...|.+.. .++.... ..+ |
T Consensus 604 p~sa~~~G~~vv----------------------------~v~~d~~-------------G~i--------D-------- 626 (954)
T PRK05367 604 PASAVMAGMKVV----------------------------VVACDEN-------------GNI--------D-------- 626 (954)
T ss_pred HHHHHHCCCEEE----------------------------EECCCCC-------------CCc--------C--------
Confidence 665544432210 0110000 000 0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
.+.|++.+. .+..++++|++--- ...|+...+ +++|.++|+++|+++++|-++.+ +-.|.. .-..+|
T Consensus 627 ~~~L~~~i~-----~~~~~la~V~it~p-st~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~-al~~l~-~pg~~G- 693 (954)
T PRK05367 627 LDDLRAKAE-----EHADNLAAIMITYP-STHGVFEET----IREICEIVHEHGGQVYLDGANMN-AQVGLA-RPGDIG- 693 (954)
T ss_pred HHHHHHHHh-----ccCCCeEEEEEEcC-CCCeeecCC----HHHHHHHHHHcCCEEEEECcChh-hccCCC-ChhhcC-
Confidence 256677775 23346666655431 233333344 89999999999999999999952 112211 011223
Q ss_pred CCcEEEec--cccc----CCccc-cceeecchHHHhhccCCh----------------H------------HH-------
Q 003466 681 VPDIACYG--KLLT----GGVIP-LAATLATNAVFDSFVGDS----------------K------------LW------- 718 (818)
Q Consensus 681 ~PDivtlg--KgLg----gGy~P-lsAvl~~~~i~~~l~~~~----------------~------------~~------- 718 (818)
.|+++++ |.++ +| -| +|.+.+++.+...+-+.. . ++
T Consensus 694 -ADi~~~s~HK~f~~P~G~G-GPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~G 771 (954)
T PRK05367 694 -ADVSHLNLHKTFCIPHGGG-GPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEG 771 (954)
T ss_pred -CCEEEecCcccCCCCcCCC-CCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHH
Confidence 6888776 8765 33 24 334555555443322110 0 00
Q ss_pred -----------HHHHHHHHHcCCCeeEEEee-ee-E--EEEEEecCcccCCCchHHHHHHHHHHHhCCceEee----cCC
Q 003466 719 -----------DLELIQQISSHRTVQRVVAL-GT-L--CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----LGN 779 (818)
Q Consensus 719 -----------~~~l~~~l~~~~~v~~vrg~-Gl-~--~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~g~ 779 (818)
.+.+.++|+.+-.+. ..+. |. + +.+++..-+.. ....+..+.++|.+.|+.... ..+
T Consensus 772 lr~~a~~~~~~A~Yl~~~L~~~~~~~-~~~~~~~~~~e~i~~~~~~~~~---~g~~~~di~krL~d~G~~~~t~~~pv~~ 847 (954)
T PRK05367 772 LRQATEVAILNANYIAKRLKDHYPVL-YTGANGRVAHECILDLRPLKES---TGITVDDIAKRLIDYGFHAPTMSFPVAG 847 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcc-ccCCCCCcccceEEEeeccccc---CCCCHHHHHHHHHHCCCeEeecCCccCC
Confidence 011223333321111 0110 00 1 11122110000 012356799999999998864 357
Q ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHHHhH
Q 003466 780 VIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 812 (818)
Q Consensus 780 ~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~ 812 (818)
.+++.|.-..|++|||++++++....+++.++.
T Consensus 848 ~l~i~ptE~~s~~elDr~~~al~~i~~e~~~~~ 880 (954)
T PRK05367 848 TLMVEPTESESKAELDRFCDAMIAIRAEIDEVE 880 (954)
T ss_pred EEEEEeeecCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999998887743
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-06 Score=107.23 Aligned_cols=280 Identities=13% Similarity=0.056 Sum_probs=160.4
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEEeCChh-HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYFSDNGS-TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f~~SGs-eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.+...++.++|++++| .+.|.|.++.+ .+-++-+.++ +.|.+.+|+ . ++++|....+-||+-
T Consensus 567 ~~~~~~~r~~la~i~g---~~~v~f~pnaga~ge~a~~~vi-~~~~~~~Gd------------~-~r~~vli~~~aH~sn 629 (993)
T PLN02414 567 QEMFEDLGDLLCEITG---FDSFSLQPNAGAAGEYAGLMVI-RAYHLSRGD------------H-HRNVCIIPVSAHGTN 629 (993)
T ss_pred HHHHHHHHHHHHHHhC---CCeEEEcCCCcHHHHHHHHHHH-HHHHhccCC------------C-CCCEEEeCCCcCccC
Confidence 3556789999999998 47888776655 3333333333 455444343 2 345677788999977
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
.....+.|.+. ..++..... .-|
T Consensus 630 ~a~a~~~G~~v----------------------------v~v~~d~~G-----------~vD------------------ 652 (993)
T PLN02414 630 PASAAMCGMKI----------------------------VVVGTDAKG-----------NIN------------------ 652 (993)
T ss_pred HHHHHHCCCEE----------------------------EEeccCCCC-----------CcC------------------
Confidence 65554433221 011110000 001
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
.+.|++.+. .+.+++++|++--. ...||...+ +++|.++|+++|+++++|=++.- +-.| -..-...
T Consensus 653 le~L~~~i~-----~~~~~ta~V~vt~p-Sn~gg~e~~----I~eI~~iah~~Galv~vDgAq~~-a~~~---l~~p~~~ 718 (993)
T PLN02414 653 IEELRKAAE-----AHKDNLAALMVTYP-STHGVYEEG----IDEICDIIHDNGGQVYMDGANMN-AQVG---LTSPGFI 718 (993)
T ss_pred HHHHHHHHh-----ccCCCeEEEEEECC-Cccccccch----HHHHHHHHHHcCCEEEEEecCHH-hccC---cCCcccc
Confidence 256777776 33457888877654 677887776 99999999999999999998841 1111 1111122
Q ss_pred CCcEEEe--ccccc----CCccccceeecchHHHhhccCC------------------hH----------------HHH-
Q 003466 681 VPDIACY--GKLLT----GGVIPLAATLATNAVFDSFVGD------------------SK----------------LWD- 719 (818)
Q Consensus 681 ~PDivtl--gKgLg----gGy~PlsAvl~~~~i~~~l~~~------------------~~----------------~~~- 719 (818)
-.|++++ .|.++ +|---+|.+.+++.+...+-+. .. ++.
T Consensus 719 GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~ 798 (993)
T PLN02414 719 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAM 798 (993)
T ss_pred CCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHH
Confidence 3588766 67665 2312256666666665433210 00 000
Q ss_pred -----------------HHHHHHHHcCCCeeEEEeeee---EEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe----
Q 003466 720 -----------------LELIQQISSHRTVQRVVALGT---LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR---- 775 (818)
Q Consensus 720 -----------------~~l~~~l~~~~~v~~vrg~Gl---~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~---- 775 (818)
.-+.++|++...+......|. -+.+.+..-+... ...+..++++|++.|++..
T Consensus 799 lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~---g~~~~di~krL~d~Gihapt~~~ 875 (993)
T PLN02414 799 MGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTA---GIEPEDVAKRLMDYGFHAPTMSW 875 (993)
T ss_pred HCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEecccccccc---CCCHHHHHHHHHHcCcEEeeecc
Confidence 112233333211111111121 1112222100000 0124678999999999875
Q ss_pred ecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhH
Q 003466 776 PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 812 (818)
Q Consensus 776 p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~ 812 (818)
|..+.+++.|+-..|++|||++++++.....+.+++.
T Consensus 876 pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~~~ 912 (993)
T PLN02414 876 PVPGTLMIEPTESESKAELDRFCDALISIREEIADIE 912 (993)
T ss_pred ccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468899999999999999999999999998887643
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-06 Score=99.70 Aligned_cols=300 Identities=13% Similarity=0.042 Sum_probs=163.8
Q ss_pred HHHHHHHHHhhhhccccc--CCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccc
Q 003466 419 IELARDMGYTAARFGHVM--FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (818)
Q Consensus 419 p~V~eAi~~q~~~~~~~~--~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~ 495 (818)
+++.+++.+.++...... ...+..+....+|+.+....+.+ .-+.+++++++++|...++... ...|
T Consensus 86 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-----~~pG----- 155 (462)
T PLN02187 86 IEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESL-----ARPN----- 155 (462)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHh-----cCCC-----
Confidence 568888888776422111 11223345556666665432211 1258999999999999998865 1233
Q ss_pred cCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
..|++.+-+|.+....+ ...|... ..++++..
T Consensus 156 -----------d~Vlv~~P~y~~y~~~~-~~~g~~~----------------------------~~~~l~~~-------- 187 (462)
T PLN02187 156 -----------ANILLPRPGFPHYDARA-AYSGLEV----------------------------RKFDLLPE-------- 187 (462)
T ss_pred -----------CEEEEeCCCCccHHHHH-HHcCCEE----------------------------EEEeCccc--------
Confidence 36888888888643221 1112110 01111000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
++ |. .| .+.+++.+. ....+.+++-| +.-.|.+. +.+.+++|.++|++||+
T Consensus 188 -----~~----~~--~d--------~~~l~~~~~-------~~~~~v~i~nP--~NPTG~v~-s~e~l~~i~~~a~~~~i 238 (462)
T PLN02187 188 -----KE----WE--ID--------LEGIEAIAD-------ENTVAMVVINP--NNPCGNVY-SHDHLKKVAETARKLGI 238 (462)
T ss_pred -----cC----Cc--cC--------HHHHHHhcC-------CCcEEEEEeCC--CCCCCCcc-CHHHHHHHHHHHHHCCC
Confidence 00 00 00 145555543 23456777788 57777766 78999999999999999
Q ss_pred cEEEeecccCcccCCccc-hhccc-CCCCcE--EEeccccc-CCccccceeecc-h-HH---Hhhc---c----C--C-h
Q 003466 656 PVIFDEVFTGFWRLGVET-TADLL-GCVPDI--ACYGKLLT-GGVIPLAATLAT-N-AV---FDSF---V----G--D-S 715 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~-a~e~~-gv~PDi--vtlgKgLg-gGy~PlsAvl~~-~-~i---~~~l---~----~--~-~ 715 (818)
++|.||++..|--.|..+ ....+ +..+=+ -+|||..+ .| +-+|.+++. + .+ ++.+ . - . .
T Consensus 239 ~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pG-lRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s 317 (462)
T PLN02187 239 MVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPG-WKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPA 317 (462)
T ss_pred EEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCcc-ceeEEEEecCchhHHHHHHHHHHHHHhccccCCCC
Confidence 999999998752223221 11111 111212 27999944 67 789988873 2 21 1111 0 0 0 0
Q ss_pred H--------HHH------------------HHHHHHHHcCCCeeE-EEee-eeEEEEEEecCcccCCCchHHHHHHH-HH
Q 003466 716 K--------LWD------------------LELIQQISSHRTVQR-VVAL-GTLCAIELQAAGCNAGYGSLYAASLL-KK 766 (818)
Q Consensus 716 ~--------~~~------------------~~l~~~l~~~~~v~~-vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~-~~ 766 (818)
. .+. +.+.+.|+.++.+.. .... |.++-+.+.... .... .....++ +.
T Consensus 318 ~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~-~~~~--~~~~~~~~~l 394 (462)
T PLN02187 318 TIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSL-MDNI--KDDIDFCVKL 394 (462)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhh-CCCC--CCHHHHHHHH
Confidence 1 110 112334455553321 1223 455544443210 0000 0122344 45
Q ss_pred HHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 767 LREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 767 l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
+.++||++.|+ .+.+|+... ..++.+++.+++|.+.++...+.
T Consensus 395 l~~~gV~v~pG~~fg~~~~iRis~~--~~~e~l~~al~rL~~~l~~~~~~ 442 (462)
T PLN02187 395 AREENLVFLPGDALGLKNWMRITIG--VEAHMLEDALERLKGFCTRHAKK 442 (462)
T ss_pred HhhCCEEEECccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhhhc
Confidence 57899999984 267788765 46899999999999998776543
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-06 Score=97.76 Aligned_cols=165 Identities=18% Similarity=0.222 Sum_probs=97.5
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcccCCCCcEE---Eeccccc-CC
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIA---CYGKLLT-GG 694 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDiv---tlgKgLg-gG 694 (818)
...++..| ++-.|.+.. -++|.++|+++++ +|+||++..|-..+..-. ....+-.+.++ +|||.++ .|
T Consensus 150 ~~~~l~nP--~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~G 222 (360)
T PRK07392 150 DGLLLNNP--HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPG 222 (360)
T ss_pred CEEEEeCC--CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCc
Confidence 34556666 788888875 4678888999986 666999988854443211 11112223333 7999999 88
Q ss_pred ccccceeecchHHHhhccCCh--H------------H-----H-----------HHHHHHHHHcCCCeeEEEeeeeEEEE
Q 003466 695 VIPLAATLATNAVFDSFVGDS--K------------L-----W-----------DLELIQQISSHRTVQRVVALGTLCAI 744 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~--~------------~-----~-----------~~~l~~~l~~~~~v~~vrg~Gl~~~i 744 (818)
+.+|.+++++++++.+.... . . + .+.+.+.++.++.+.-..+.|.++-+
T Consensus 223 -lRiG~~v~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~fl~~ 301 (360)
T PRK07392 223 -LRLGYAIAHPDRLQRWQQWRDPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTPLPSAANFLLV 301 (360)
T ss_pred -hheeeeeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCCEEEE
Confidence 79999999998887654211 0 0 0 01133444554443322334555544
Q ss_pred EEecCcccCCCchHHHHHHHHHHH-hCCceEeec---C----CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL---G----NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~---g----~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+.. .+.+++..++ ++||++.|+ + +.+|+.... .++.+++.+.+++.+
T Consensus 302 ~~~~----------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~~~l~~al~~~~ 357 (360)
T PRK07392 302 QSQG----------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT---EAENQRLLEALAAIL 357 (360)
T ss_pred EcCC----------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC---HHHHHHHHHHHHHHh
Confidence 4422 1456777764 679999973 1 467877543 344455555555443
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.8e-07 Score=99.71 Aligned_cols=209 Identities=11% Similarity=0.076 Sum_probs=119.9
Q ss_pred eeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccC-C----CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 401 QFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMF-P----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 401 ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~-~----~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
|||..+ .+-- ++++.+|+.+.+... +.... . ....+...++.++|+++++.. .+.++|+++|++|+
T Consensus 2 Yld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~t~~~t~a~ 73 (364)
T PLN02651 2 YLDMQA------TTPI-DPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD-PKEIIFTSGATESN 73 (364)
T ss_pred cccCcC------CCCC-CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHH
Confidence 566543 4445 889999998877542 21110 0 001244567778888888753 35799999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
..+++.+++.+. +. ..+||+....|++ ....+..-.. .+.
T Consensus 74 ~~~l~~~~~~~~-~~----------------g~~vl~~~~~h~s-~~~~~~~~~~--------------~g~-------- 113 (364)
T PLN02651 74 NLAIKGVMHFYK-DK----------------KKHVITTQTEHKC-VLDSCRHLQQ--------------EGF-------- 113 (364)
T ss_pred HHHHHHHHHhcc-CC----------------CCEEEEcccccHH-HHHHHHHHHh--------------cCC--------
Confidence 999987733221 11 1356665544433 3222111000 000
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
....++.+... -.| .+.+++.|. +++.+|++..+ ++..|
T Consensus 114 ---~v~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~lv~v~~~-~n~tG 152 (364)
T PLN02651 114 ---EVTYLPVKSDG-----------LVD------------------LDELAAAIR--------PDTALVSVMAV-NNEIG 152 (364)
T ss_pred ---EEEEEccCCCC-----------cCC------------------HHHHHHhcC--------CCcEEEEEECC-CCCce
Confidence 00011111000 000 145666664 24677888876 78889
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCCccccceeecchHHHh
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFD 709 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~~~i~~ 709 (818)
.+.+ +++|.++|++||+++++|.+|+ +|.. .+-.+.+ .+|++++ -| ++|. ..+|++.++++..+
T Consensus 153 ~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~--~~~~~~~--~~D~~~~s~hK-~~gp-~G~g~l~v~~~~~~ 218 (364)
T PLN02651 153 VIQP----VEEIGELCREKKVLFHTDAAQA-VGKI--PVDVDDL--GVDLMSISGHK-IYGP-KGVGALYVRRRPRV 218 (364)
T ss_pred eccc----HHHHHHHHHHcCCEEEEEcchh-hCCc--ccCcccC--CCCEEEechhh-hCCC-CceEEEEEcCCCCC
Confidence 8887 8999999999999999999995 4321 1222333 3698865 46 5432 33677777876544
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-06 Score=94.65 Aligned_cols=300 Identities=10% Similarity=0.017 Sum_probs=164.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC---CC-CcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG---WA-SRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~---~l-~~v~f~~SGseA~e 475 (818)
.+||+..|. ..++ - .+.+.+|+.+.+.....+....+..+....+|+.+.+..+.+ .- +.+++++++++|..
T Consensus 29 ~~i~l~~~~--p~~~-~-~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~ 104 (393)
T TIGR03538 29 PPIALSIGE--PKHP-T-PAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALF 104 (393)
T ss_pred CeEEecCCC--CCCC-C-CHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHH
Confidence 778877643 2233 3 688999999876543322222334556777777776643311 12 35888999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccce-EEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL-KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~-~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
.++++.. . ++.. .|++-+-+|-+.... ....|..
T Consensus 105 ~~~~~l~-----~---------------~gd~~~vlv~~P~y~~~~~~-~~~~g~~------------------------ 139 (393)
T TIGR03538 105 AFAQAVI-----N---------------PGQAPLVVMPNPFYQIYEGA-ALLAGAE------------------------ 139 (393)
T ss_pred HHHHHHc-----C---------------CCCcceEEecCCCCcchHHH-HHhcCCe------------------------
Confidence 8888651 1 2222 366655566542211 1111111
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAG 633 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~g 633 (818)
.+.+|-.- + + .|. .+ .+.+++.+. .++.+|++ .| ++-.
T Consensus 140 ------~~~v~~~~--------~---~----~~~--~d--------~~~l~~~~~--------~~~k~i~l~~p--~NPt 178 (393)
T TIGR03538 140 ------PYFLNCTA--------E---N----GFL--PD--------FDAVPESVW--------RRCQLLFVCSP--GNPT 178 (393)
T ss_pred ------EEEeeccc--------c---C----CCC--CC--------HHHHHHHHh--------hcceEEEEeCC--CCCc
Confidence 11111000 0 0 000 00 134444443 13455544 44 7878
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC--ccc----hhcccCC--CCcE---EEeccccc-CCcccccee
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VET----TADLLGC--VPDI---ACYGKLLT-GGVIPLAAT 701 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG--~~~----a~e~~gv--~PDi---vtlgKgLg-gGy~PlsAv 701 (818)
|.+. +.+.+++|.++|++||+++|.||++..|-..+ ... .....+. .+.+ -+|||.++ .| +-+|.+
T Consensus 179 G~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~G-lRvG~~ 256 (393)
T TIGR03538 179 GAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPG-LRSGFV 256 (393)
T ss_pred Cccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcc-cceEEE
Confidence 8866 78999999999999999999999997653222 111 1111221 1122 37999754 45 788899
Q ss_pred ecchHHHhhccCC--------hH--------------HHH----------HHHHHHHHcCCCeeEEEeeeeEEEEEEecC
Q 003466 702 LATNAVFDSFVGD--------SK--------------LWD----------LELIQQISSHRTVQRVVALGTLCAIELQAA 749 (818)
Q Consensus 702 l~~~~i~~~l~~~--------~~--------------~~~----------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~ 749 (818)
++++++++.+... .. .+. +.+.+.++.+-.+ ..-..|.++-+.+..+
T Consensus 257 i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~gg~f~~~~~~~~ 335 (393)
T TIGR03538 257 AGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQVLDL-ELPDAGFYLWPKVPGD 335 (393)
T ss_pred ecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhCcc-cCCCeeEEEEEECCCC
Confidence 9998887654311 00 010 0122223322001 1122355555555311
Q ss_pred cccCCCchHHHHHHHHHHH-hCCceEeec-------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 750 GCNAGYGSLYAASLLKKLR-EDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 750 ~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
...+++.|+ ++||.+.|+ .+.+|++.. .+++++++++++|.+.
T Consensus 336 ----------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~--~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 336 ----------DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALV--APLEECVEAAERIRSF 392 (393)
T ss_pred ----------HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEec--CCHHHHHHHHHHHHHh
Confidence 345777776 579999752 146777654 3688999999888763
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-07 Score=103.30 Aligned_cols=206 Identities=18% Similarity=0.135 Sum_probs=125.8
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+|+++|+++.+. +.+++++||+.|+..++.... ..| ..||+.+. .||.
T Consensus 67 ~~~p~~~~le~~lA~l~g~---~~al~~~sG~~Ai~~~l~all-----~~G----------------d~Vl~~~~-~~~~ 121 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGA---EACFATASGMSAVFTALGALL-----GAG----------------DRLVAARS-LFGS 121 (403)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHHHHh-----CCC----------------CEEEEccC-Ccch
Confidence 4567788999999999873 688999999999999887541 222 25665544 5555
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
++...... ....|.. ...++ .+|
T Consensus 122 t~~~~~~~-------------~~~~G~~-------------v~~vd--------------~~d----------------- 144 (403)
T PRK07810 122 CFVVCNEI-------------LPRWGVE-------------TVFVD--------------GED----------------- 144 (403)
T ss_pred HHHHHHHH-------------HHHcCcE-------------EEEEC--------------CCC-----------------
Confidence 43322110 0000000 00000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. .++.+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++. .+-.... . .+|
T Consensus 145 -~~~l~~ai~--------~~tklV~~esp-~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~~--~-~~g 206 (403)
T PRK07810 145 -LSQWEEALS--------VPTQAVFFETP-SNPMQSLVD----IAAVSELAHAAGAKVVLDNVFA-TPLLQRG--L-PLG 206 (403)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCC-ccccCCh--h-hcC
Confidence 145666664 24678999976 677777665 9999999999999999999984 2222111 1 234
Q ss_pred CCCcEE--EecccccC-Ccccc-ceeecchHHHhh-cc----CCh-H------------------HHH------HHHHHH
Q 003466 680 CVPDIA--CYGKLLTG-GVIPL-AATLATNAVFDS-FV----GDS-K------------------LWD------LELIQQ 725 (818)
Q Consensus 680 v~PDiv--tlgKgLgg-Gy~Pl-sAvl~~~~i~~~-l~----~~~-~------------------~~~------~~l~~~ 725 (818)
.|++ .++|.++| | -.+ |+++++++.+.. +. ..+ . .++ ..+.+.
T Consensus 207 --aDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~ 283 (403)
T PRK07810 207 --ADVVVYSGTKHIDGQG-RVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLALRVRHSNASALRIAEF 283 (403)
T ss_pred --CcEEEccCCceecCCc-CceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 4776 57898875 4 234 567777765431 21 100 0 111 124455
Q ss_pred HHcCCCeeEEE------------------eeeeEEEEEEec
Q 003466 726 ISSHRTVQRVV------------------ALGTLCAIELQA 748 (818)
Q Consensus 726 l~~~~~v~~vr------------------g~Gl~~~iel~~ 748 (818)
|+.+|.|..|. |.|.|+.+++..
T Consensus 284 L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 284 LEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred HhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 77888887776 789999999964
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.9e-07 Score=100.06 Aligned_cols=182 Identities=15% Similarity=0.114 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCC
Q 003466 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (818)
Q Consensus 419 p~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~ 498 (818)
++-.+++.+.+..... ...+...+|+++|+++++. +.+++++||++|+..|++.. . -..|
T Consensus 14 ~~e~~~~~~~l~~~~~-----~~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~lal~al-~---~~~G-------- 73 (379)
T PRK11658 14 DEELAAVKEVLRSGWI-----TTGPKNQALEQAFCQLTGN---QHAIAVSSATAGMHITLMAL-G---IGPG-------- 73 (379)
T ss_pred HHHHHHHHHHHHcCCc-----cCCHhHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-C---CCCC--------
Confidence 4557777776654321 1245678999999999974 57888999999999999865 1 0122
Q ss_pred CccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhhcccccc
Q 003466 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (818)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~~ 577 (818)
..||+...+|.+.. .++...|... ..+++. +.
T Consensus 74 --------d~Viv~~~~~~~~~-~~~~~~G~~~----------------------------v~vd~~~~~---------- 106 (379)
T PRK11658 74 --------DEVITPSLTWVSTL-NMIVLLGATP----------------------------VMVDVDRDT---------- 106 (379)
T ss_pred --------CEEEECCCcHHHHH-HHHHHcCCEE----------------------------EEEecCCCc----------
Confidence 36777777776643 2222222110 001100 00
Q ss_pred cccc-CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 578 ITFC-SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 578 ~~~n-d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
++ | .+.+++.+. .++.+|+ |+ .. .|...+ +++|.++|++||++
T Consensus 107 --~~~d------------------~~~l~~~i~--------~~tkav~--~~-~~-~G~~~d----~~~i~~~a~~~gi~ 150 (379)
T PRK11658 107 --LMVT------------------PEAIEAAIT--------PRTKAII--PV-HY-AGAPAD----LDAIRAIGERYGIP 150 (379)
T ss_pred --CCcC------------------HHHHHHhcc--------cCCeEEE--Ee-CC-CCCcCC----HHHHHHHHHHcCCe
Confidence 10 1 145666553 2455665 43 32 455443 78999999999999
Q ss_pred EEEeeccc-CcccCCccchhcccCCCCcEEEec--ccccCCccccceeecc-hHHHh
Q 003466 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLAT-NAVFD 709 (818)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~-~~i~~ 709 (818)
+|.|++|+ |.-..|+.. ..+|+ |+..|+ |.|++| ..|+++++ +++++
T Consensus 151 vi~D~a~a~g~~~~~~~~--g~~g~--~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~ 201 (379)
T PRK11658 151 VIEDAAHAVGTYYKGRHI--GARGT--AIFSFHAIKNITCA--EGGLVVTDDDELAD 201 (379)
T ss_pred EEEECCCccCCeECCeec--CCCCC--EEEeCCCCCcCccc--CceEEEECCHHHHH
Confidence 99999996 432223221 12343 566655 788776 46666664 56544
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-06 Score=98.26 Aligned_cols=180 Identities=11% Similarity=0.124 Sum_probs=103.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchhccc
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~e~~ 678 (818)
+.+++.+++ ...+..++++-. .++-.|.+. +.+-+++|.++|++||+++|.||+...|-.-+. .-....+
T Consensus 164 ~~l~~~~~~-----~~~~~~~~~~~~-p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~ 236 (404)
T PTZ00376 164 DGMLEDLRT-----APNGSVVLLHAC-AHNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLF 236 (404)
T ss_pred HHHHHHHHh-----CCCCCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHH
Confidence 445566642 112223444433 278888877 899999999999999999999999987733221 1011111
Q ss_pred -CCCCcE---EEeccccc-CCcccccee---ecchHHHh----hcc-------CC-hH--------HHH---------H-
Q 003466 679 -GCVPDI---ACYGKLLT-GGVIPLAAT---LATNAVFD----SFV-------GD-SK--------LWD---------L- 720 (818)
Q Consensus 679 -gv~PDi---vtlgKgLg-gGy~PlsAv---l~~~~i~~----~l~-------~~-~~--------~~~---------~- 720 (818)
...+.+ .+|||.++ .| +-+|.+ ++++++.+ .+. .. .. .+. +
T Consensus 237 ~~~~~~vi~i~SfSK~~~~~G-lRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 315 (404)
T PTZ00376 237 AERGVEFLVAQSFSKNMGLYG-ERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSE 315 (404)
T ss_pred HhcCCcEEEEEeCCCcccccc-cccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHH
Confidence 111222 37999999 78 789987 56765332 211 00 10 110 0
Q ss_pred -------------HHHHHHHcCCC---eeEEEeeeeEEEE-EEecCcccCCCchHHHHHHHHHHHhC-CceEeecCCEEE
Q 003466 721 -------------ELIQQISSHRT---VQRVVALGTLCAI-ELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPLGNVIY 782 (818)
Q Consensus 721 -------------~l~~~l~~~~~---v~~vrg~Gl~~~i-el~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~g~~ir 782 (818)
.+.+.+++++. ...+...|.++.+ .+ ...++++|.++ ||++.|++ |
T Consensus 316 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~-------------~~~~~~~L~~~~~v~v~p~~---R 379 (404)
T PTZ00376 316 LKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGL-------------TKEQVERLIEKYHIYLLDNG---R 379 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCC-------------CHHHHHHHHHhCCEeecCCC---e
Confidence 01122333321 1112233433322 22 12577788866 99999875 5
Q ss_pred EECCCCChHHHHHHHHHHHHHHHH
Q 003466 783 LMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 783 ~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
++... .+++++++++++|.+++.
T Consensus 380 is~~~-~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 380 ISVAG-LTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred EEEec-cCHHhHHHHHHHHHHHHh
Confidence 55433 778999999999998764
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-06 Score=99.13 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccC-CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCc----------ccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAA-GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF----------WRLG 670 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~-gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGf----------GRtG 670 (818)
+.|++.|.+ .+..++++|+++-- ... ||. +.+.+.+++++++|++||+.||.|+++.-. |..+
T Consensus 139 e~Le~~I~~----~~~~~~~~I~v~~p-~N~~gG~-~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~ 212 (431)
T cd00617 139 AKLEKLIDE----VGAENIPYIVLTIT-NNTAGGQ-PVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRD 212 (431)
T ss_pred HHHHHHhCc----ccCCCccEEEEECC-cCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccC
Confidence 677777763 22456888888732 343 454 558999999999999999999999997421 1222
Q ss_pred ccch---hcccCCCCcEEEec--ccccCCccccc-eeecch-HHHhhccCCh--------------H--------H----
Q 003466 671 VETT---ADLLGCVPDIACYG--KLLTGGVIPLA-ATLATN-AVFDSFVGDS--------------K--------L---- 717 (818)
Q Consensus 671 ~~~a---~e~~gv~PDivtlg--KgLggGy~Pls-Avl~~~-~i~~~l~~~~--------------~--------~---- 717 (818)
+-.+ .+.+. --|..+|+ |..+. |+| .+++++ ++++.+.... + +
T Consensus 213 ~si~ei~~e~~s-~sd~~~mS~~K~~~~---~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~ 288 (431)
T cd00617 213 KSIAEIAREMFS-YADGCTMSAKKDGLV---NIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAV 288 (431)
T ss_pred CCHHHHHHHhhc-cCCEEEEEeecCCCC---ccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcc
Confidence 2111 01111 24555554 43332 333 477765 5766554210 0 0
Q ss_pred ----HH------HHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEee---------
Q 003466 718 ----WD------LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRP--------- 776 (818)
Q Consensus 718 ----~~------~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p--------- 776 (818)
+. +.+.+.|++.+.. -+. .-|..+-++...-..+..+...-+..++.+|+ +.||.+.-
T Consensus 289 ~~~~l~~~~~~r~~l~~~L~~~G~~-v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~ 367 (431)
T cd00617 289 EEDYLRHRVEQVRYLGDRLDEAGVP-IVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRD 367 (431)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCC-ccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccC
Confidence 00 1123444444321 122 23334444433211111111113556775555 66787541
Q ss_pred --c-------CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHHHh
Q 003466 777 --L-------GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 777 --~-------g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
. -+.+|+..|- +.|.+++|.+.+++.++++..+.+
T Consensus 368 ~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~~ 412 (431)
T cd00617 368 PNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERREDI 412 (431)
T ss_pred CCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHhhC
Confidence 1 1578998887 789999999999999998876543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.9e-07 Score=101.20 Aligned_cols=170 Identities=14% Similarity=0.086 Sum_probs=103.2
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+|+++|+++.+. +.+++++||++|+..++.... +.| ..|++.+..|+|.
T Consensus 49 ~~~pt~~~L~~~lA~l~g~---~~~i~~~sg~~Ai~~~l~~l~-----~~G----------------D~Vl~~~~~y~~~ 104 (386)
T PRK08045 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL-----KPG----------------DLLVAPHDCYGGS 104 (386)
T ss_pred CCCccHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHc-----CCC----------------CEEEEcCCCcHHH
Confidence 4567788999999998873 479999999999998887541 222 3677777777653
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
......+.... +. .+ .+.|. .+
T Consensus 105 ~~~~~~~~~~~--------------gi--------------~v----------------~~vd~-------~d------- 126 (386)
T PRK08045 105 YRLFDSLAKRG--------------CY--------------RV----------------LFVDQ-------GD------- 126 (386)
T ss_pred HHHHHHHHhhC--------------Ce--------------EE----------------EEeCC-------CC-------
Confidence 21111111000 00 00 00000 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. .++.+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++... -.. ....
T Consensus 127 -~e~l~~~l~--------~~tklV~l~sP-~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~-~~~-----~pl~ 186 (386)
T PRK08045 127 -EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP-ALQ-----NPLA 186 (386)
T ss_pred -HHHHHHhcc--------cCCeEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc-ccC-----Cchh
Confidence 134555553 24578888875 777787775 899999999999999999998532 111 1122
Q ss_pred CCCcEE--EecccccCC-ccccceeec-chHHHhhc
Q 003466 680 CVPDIA--CYGKLLTGG-VIPLAATLA-TNAVFDSF 711 (818)
Q Consensus 680 v~PDiv--tlgKgLggG-y~PlsAvl~-~~~i~~~l 711 (818)
.-.|++ .+.|-++|. =.-.|++++ ++++.+.+
T Consensus 187 ~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l 222 (386)
T PRK08045 187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTEL 222 (386)
T ss_pred hCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHH
Confidence 234776 589988751 023556655 46555433
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-07 Score=100.66 Aligned_cols=135 Identities=14% Similarity=0.144 Sum_probs=84.4
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC-Ccc
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVI 696 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg-Gy~ 696 (818)
..+|++|.. .+..+ +...+++|.++|++||+++|+|+++..+ -.... . .+|+ |++ +++|.++| | -
T Consensus 148 tklV~ie~p-t~~~~----~~~dl~~i~~la~~~gi~vivD~a~a~~-~~~~p--~-~~g~--Divv~S~tK~l~g~~-~ 215 (389)
T PRK05968 148 AKLLYLESP-TSWVF----ELQDVAALAALAKRHGVVTMIDNSWASP-VFQRP--I-TLGV--DLVIHSASKYLGGHS-D 215 (389)
T ss_pred CCEEEEECC-CCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcch-hccCc--h-hcCC--cEEEeeccccccCCC-C
Confidence 457888864 44333 4566999999999999999999998432 22221 1 1343 766 68899986 3 2
Q ss_pred c-cceeecchHHHhhccC------ChH------------------HH------HHHHHHHHHcCCCeeEEE---------
Q 003466 697 P-LAATLATNAVFDSFVG------DSK------------------LW------DLELIQQISSHRTVQRVV--------- 736 (818)
Q Consensus 697 P-lsAvl~~~~i~~~l~~------~~~------------------~~------~~~l~~~l~~~~~v~~vr--------- 736 (818)
+ .|++++++++++.+.. +.. .+ .+.+.+.|+.+|.|..|.
T Consensus 216 ~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~ 295 (389)
T PRK05968 216 TVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPP 295 (389)
T ss_pred eEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChH
Confidence 2 3556677876654431 100 11 123456677888876665
Q ss_pred ----eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceE
Q 003466 737 ----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM 774 (818)
Q Consensus 737 ----g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv 774 (818)
|.|.++.|++... ..+.+|++.|...++-+
T Consensus 296 ~~~~g~g~~~sf~~~~~--------~~~~~f~~~L~~~~~~~ 329 (389)
T PRK05968 296 AGLSGTSGLFSFIFREG--------IDVRAFADALKLFRLGV 329 (389)
T ss_pred HhCCCCceEEEEEECCH--------HHHHHHHHhCCccEEec
Confidence 5677999998632 33567777776655433
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.7e-06 Score=96.59 Aligned_cols=309 Identities=19% Similarity=0.208 Sum_probs=194.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccc-----cCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~-----~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA 473 (818)
..+||..|+- .. .+--...+.+++.+.+...... ....+..+....+++.+...-|-. ..+.++.+++..+|
T Consensus 90 ~~i~f~~g~p-~~-~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~a 167 (459)
T COG1167 90 SVIDFAGGLP-DP-SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQA 167 (459)
T ss_pred ceecCCCCCC-Cc-ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHH
Confidence 6788887662 22 2221456666666655433221 112344566778888887322211 12579999888889
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
.+...++. -..| ..|++=+-+|||.. .++...|.+
T Consensus 168 l~l~~~~l-----~~pG----------------d~v~vE~PtY~~~~-~~~~~~g~~----------------------- 202 (459)
T COG1167 168 LDLLLRLL-----LDPG----------------DTVLVEDPTYPGAL-QALEALGAR----------------------- 202 (459)
T ss_pred HHHHHHHh-----CCCC----------------CEEEEcCCCcHHHH-HHHHHcCCc-----------------------
Confidence 88777766 1233 26777778899743 112211111
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
.+++|-.- + .-+ .+.|++.++. .++.++.+-|..|.-.
T Consensus 203 -------~~~vp~d~------------~--------G~~--------~e~le~~~~~-------~~~k~~y~~P~~qNPt 240 (459)
T COG1167 203 -------VIPVPVDE------------D--------GID--------PEALEEALAQ-------WKPKAVYVTPTFQNPT 240 (459)
T ss_pred -------EEecCCCC------------C--------CCC--------HHHHHHHHhh-------cCCcEEEECCCCCCCC
Confidence 12222100 0 001 2667777762 3788999999999999
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-----hhcccCCCCcEEEecccccCCccccceeecchHHH
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-----TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-----a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~ 708 (818)
|..+ +.+==++|.++|++||+.+|=||+..=| +....- +....+-.-=+-+|||.|.=| +-+|.++++++++
T Consensus 241 G~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el-~~~~~p~~~l~~ld~~~rViy~gSFSK~l~Pg-lRlG~vv~p~~~~ 317 (459)
T COG1167 241 GVTM-SLERRKALLALAEKYDVLIIEDDYYGEL-RYDGPPPPPLKALDAPGRVIYLGSFSKTLAPG-LRLGYVVAPPELI 317 (459)
T ss_pred CCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhh-hcCCCCCCChHhhCCCCCEEEEeeehhhcccc-cceeeeeCCHHHH
Confidence 9888 7888999999999999999999999655 333211 111111111245999999988 7999999999988
Q ss_pred hhccCChH----------------H-----H--------------HHHHHHHHHcC-C-CeeEEE-eeeeEEEEEEecCc
Q 003466 709 DSFVGDSK----------------L-----W--------------DLELIQQISSH-R-TVQRVV-ALGTLCAIELQAAG 750 (818)
Q Consensus 709 ~~l~~~~~----------------~-----~--------------~~~l~~~l~~~-~-~v~~vr-g~Gl~~~iel~~~~ 750 (818)
+.+..... . + ++.+.+.+.++ + .+.-.. ..|+++-+++...
T Consensus 318 ~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~- 396 (459)
T COG1167 318 EKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEG- 396 (459)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCC-
Confidence 76643211 0 0 01233445444 3 222222 3378887877654
Q ss_pred ccCCCchHHHHHHHHHHHhCCceEeec----------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 751 CNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 751 ~~~~~~~~~a~~~~~~l~e~Gvlv~p~----------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+..+++++|+.+.|. .+.+|+.... .++++|++.+..|.+++.+..
T Consensus 397 -------~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~-~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 397 -------IDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSS-PSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred -------CCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHHHHHHHHh
Confidence 23667889999999999871 2578988876 458999999999999987754
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.7e-07 Score=99.68 Aligned_cols=205 Identities=15% Similarity=0.099 Sum_probs=120.3
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|+++.+. +..+.++||++|+..++.+. ..| .+||+.+..|++
T Consensus 48 r~~~pt~~~le~~la~l~g~---~~~~~~~sG~~ai~~~~~ll------~~G----------------d~Vl~~~~~y~~ 102 (366)
T PRK08247 48 RTGNPTRGVLEQAIADLEGG---DQGFACSSGMAAIQLVMSLF------RSG----------------DELIVSSDLYGG 102 (366)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHh------CCC----------------CEEEEecCCcCc
Confidence 34567789999999999874 56788999999998776433 122 378888888887
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
......... . ..|.. ...++ ..|
T Consensus 103 t~~~~~~~~--~------------~~G~~-------------v~~vd--------------~~d---------------- 125 (366)
T PRK08247 103 TYRLFEEHW--K------------KWNVR-------------FVYVN--------------TAS---------------- 125 (366)
T ss_pred HHHHHHHHh--h------------ccCce-------------EEEEC--------------CCC----------------
Confidence 321100000 0 00000 00000 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADL 677 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~ 677 (818)
.+.+++.+. +++.+|++|.. .+..| +...+++|.++|++||+++|+||++. ++ .+..
T Consensus 126 --~~~l~~~i~--------~~tklv~le~P-~NP~~----~~~dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p----- 183 (366)
T PRK08247 126 --LKAIEQAIT--------PNTKAIFIETP-TNPLM----QETDIAAIAKIAKKHGLLLIVDNTFYTPV--LQRP----- 183 (366)
T ss_pred --HHHHHHhcc--------cCceEEEEECC-CCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcccc--ccCc-----
Confidence 144555553 25678888875 44333 55669999999999999999999983 22 1111
Q ss_pred cCCCCcEE--EecccccCC-ccccceeecc-hHHHhhccCC------h--H---------------HHH------HHHHH
Q 003466 678 LGCVPDIA--CYGKLLTGG-VIPLAATLAT-NAVFDSFVGD------S--K---------------LWD------LELIQ 724 (818)
Q Consensus 678 ~gv~PDiv--tlgKgLggG-y~PlsAvl~~-~~i~~~l~~~------~--~---------------~~~------~~l~~ 724 (818)
.....|++ .++|.++|. =+-.|+++++ +++++.+... . . .++ ..+.+
T Consensus 184 ~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~~r~~~~~~~a~~l~~ 263 (366)
T PRK08247 184 LEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAA 263 (366)
T ss_pred hhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 11234665 689999851 1234556665 5555433210 0 0 001 12345
Q ss_pred HHHcCCCeeEEE--eeeeEEEEEEe
Q 003466 725 QISSHRTVQRVV--ALGTLCAIELQ 747 (818)
Q Consensus 725 ~l~~~~~v~~vr--g~Gl~~~iel~ 747 (818)
.|+.+|.+..|. +.|.++++++.
T Consensus 264 ~L~~~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 264 FLNEQPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred HHHhCCCeeEEecCCcCcEEEEEEC
Confidence 567788776543 46889999875
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.6e-07 Score=100.55 Aligned_cols=84 Identities=17% Similarity=0.127 Sum_probs=58.6
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCC-
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGG- 694 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggG- 694 (818)
.++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||++..+ -... ...++ .|++ +++|.++|.
T Consensus 129 ~~tklV~l~sp-~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-~~~~---~l~~~--~divv~S~sK~l~G~~ 197 (376)
T PRK06460 129 KRYDVVFVENI-TNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-INQK---PLELG--ADIVVHSASKFLAGHN 197 (376)
T ss_pred CCceEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC---hhhcC--CCEEEeecceeccCCC
Confidence 35678999986 788888776 678999999999999999998532 1111 01123 5766 789999741
Q ss_pred ccccceeecchHHHhhcc
Q 003466 695 VIPLAATLATNAVFDSFV 712 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~ 712 (818)
-.-.|.+++++++++.+.
T Consensus 198 ~~~~G~~~~~~~l~~~l~ 215 (376)
T PRK06460 198 DVIAGLAAGYGKLLNVID 215 (376)
T ss_pred CceEEEEecCHHHHHHHH
Confidence 012556788888877653
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-06 Score=100.41 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=59.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC-Cc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg-Gy 695 (818)
++.+|++|.. .+..|.+.+ +++|.++|++||+++|+|+++.. +..+.. .+.-.|++ .++|.++| |-
T Consensus 150 ~tklV~le~p-~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~-~~~~~~-----l~~g~Di~v~S~tK~l~g~gd 218 (403)
T PRK07503 150 KTRMVYFETP-ANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCT-PYLQRP-----LELGADLVVHSATKYLGGHGD 218 (403)
T ss_pred cCcEEEEeCC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCCc-----hhhCCCEEEccccccccCCCc
Confidence 5678888875 677787765 89999999999999999999952 222221 22345776 57899986 32
Q ss_pred cccceeecchHHHhhcc
Q 003466 696 IPLAATLATNAVFDSFV 712 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~ 712 (818)
.=.|++++++++++.+.
T Consensus 219 ~~gG~v~~~~~l~~~l~ 235 (403)
T PRK07503 219 ITAGLVVGGKALADRIR 235 (403)
T ss_pred eeEEEEEcCHHHHHHHH
Confidence 33566777888776553
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-06 Score=97.67 Aligned_cols=187 Identities=16% Similarity=0.161 Sum_probs=113.1
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCC
Q 003466 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (818)
Q Consensus 419 p~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~ 498 (818)
++..+|+.+.+..... .+..+...++++.+++..+ .+.+++++||++|...+++.+ . -..|
T Consensus 11 ~~e~~a~~~~~~~~~~----~~~g~~~~~~e~~la~~~g---~~~~v~~~sgt~aL~~~l~al-~---~~pG-------- 71 (376)
T TIGR02379 11 GQELEYIAEAISEGKL----SGDGPFSRRCETWLENRTG---TKKALLTPSCTAALEMAALLL-D---IQPG-------- 71 (376)
T ss_pred HHHHHHHHHHHHcCCc----cCCcHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C---CCCc--------
Confidence 4557788877765322 1235678899999999887 368999999999998888754 0 1112
Q ss_pred CccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccc
Q 003466 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (818)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~ 578 (818)
..||+...+|.+.. .++...|... ..+++...
T Consensus 72 --------d~Viv~~~t~~~~~-~~~~~~G~~~----------------------------v~vd~d~~----------- 103 (376)
T TIGR02379 72 --------DEVIMPSYTFVSTA-NAFVLRGAKI----------------------------VFVDIRPD----------- 103 (376)
T ss_pred --------CEEEECCCCcHHHH-HHHHHcCCEE----------------------------EEEecCCC-----------
Confidence 36787777776532 2222222110 00110000
Q ss_pred cccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEE
Q 003466 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (818)
Q Consensus 579 ~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI 658 (818)
+++ + | .+.+++.+. .++.+|+ |+ .. .|...+ +++|.++|++||+++|
T Consensus 104 ~~~-~--------d--------~~~le~~i~--------~~tk~Ii--p~-~~-~G~~~d----~~~I~~la~~~~i~vI 150 (376)
T TIGR02379 104 TMN-I--------D--------ETLIESAIT--------HRTKAIV--PV-HY-AGVACD----MDTIMALANKHQLFVI 150 (376)
T ss_pred cCC-C--------C--------HHHHHHhcC--------cCceEEE--Ee-CC-CCCccC----HHHHHHHHHHCCCEEE
Confidence 000 0 0 144565553 2455665 54 33 455444 7899999999999999
Q ss_pred EeecccCcccCCccchhcccCCCCcEEEec----ccccCCccccceeecc-hHHHhh
Q 003466 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDS 710 (818)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~-~~i~~~ 710 (818)
.|++| ++|.. +.-...|..-|+.+|| |.++.| ...|++++. +++++.
T Consensus 151 eDaa~-~~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~~~~~~ 202 (376)
T TIGR02379 151 EDAAQ-GVMST---YKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQAFIER 202 (376)
T ss_pred EECcc-ccCCc---cCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCHHHHHH
Confidence 99999 45432 1112334455899999 999866 467777775 566553
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-06 Score=105.53 Aligned_cols=279 Identities=11% Similarity=0.062 Sum_probs=164.3
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (818)
.+...++.++|++++|-+ ...++.++|+.|+-+++.++ |.|...+|+ . ++.+|....+-||+-.
T Consensus 529 lq~i~elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~ai-R~y~~~rge------------~-~R~~vlip~saHgtnP 592 (939)
T TIGR00461 529 QELIAQLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVI-RSYHESRGE------------N-HRNICLIPVSAHGTNP 592 (939)
T ss_pred HHHHHHHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHH-HHHHHhcCC------------C-CCCEEEEEccccCcCH
Confidence 356678999999999843 34567788888888888888 666655543 2 3467788889999875
Q ss_pred ccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHH
Q 003466 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (818)
Q Consensus 522 ~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~ 601 (818)
.+....|.+. +.+|..- -..+ | .
T Consensus 593 asa~~~G~~V------------------------------v~V~~d~-----------~G~i--------D--------l 615 (939)
T TIGR00461 593 ASAAMAGMQV------------------------------VPVNCDQ-----------DGNI--------D--------L 615 (939)
T ss_pred HHHHHCCCEE------------------------------EEeccCC-----------CCCc--------C--------H
Confidence 5544443221 0111000 0000 0 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC-cccCCccchhcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG-fGRtG~~~a~e~~gv 680 (818)
+.|++.+. .+++++++|++--. .. .|.+.++ +++|.++|+++|..+++|=++.. .+.. ...-..
T Consensus 616 e~L~~~i~-----~~~~~taaV~iT~p-st-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~~l-----~~Pg~~ 680 (939)
T TIGR00461 616 VDLKNKAE-----QHGDELAAVMVTYP-ST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQVGL-----TSPGDL 680 (939)
T ss_pred HHHHHHHh-----hcCCceEEEEEEeC-Cc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCCCC-----CCcccc
Confidence 56777776 33467888877543 34 4555543 89999999999999999988853 2111 011123
Q ss_pred CCcEEEe--ccccc-----CCccccceeecchHHHhhccCC---------hH-----------------------HHH--
Q 003466 681 VPDIACY--GKLLT-----GGVIPLAATLATNAVFDSFVGD---------SK-----------------------LWD-- 719 (818)
Q Consensus 681 ~PDivtl--gKgLg-----gGy~PlsAvl~~~~i~~~l~~~---------~~-----------------------~~~-- 719 (818)
-.|++++ .|.|+ || -=+|.+++++.+...+-+. ++ ++.
T Consensus 681 GaDi~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~l 759 (939)
T TIGR00461 681 GADVCHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMM 759 (939)
T ss_pred CCCEEEecCCccCCCCCCCCC-CCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHH
Confidence 4699887 49777 44 2345566665543322100 00 000
Q ss_pred ----------------HHHHHHHHcCCCeeEEEeeee-E--EEEEEecCcccCCCchHHHHHHHHHHHhCCceEee----
Q 003466 720 ----------------LELIQQISSHRTVQRVVALGT-L--CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP---- 776 (818)
Q Consensus 720 ----------------~~l~~~l~~~~~v~~vrg~Gl-~--~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p---- 776 (818)
+-+.++|.++..+......|. + +.+++...+. .....+.+++++|.+.|++...
T Consensus 760 G~~GL~~~a~~ailnAnYl~~rL~~~~~~l~~~~~~~~~hEfv~~~~~~~~---~~g~~~~dIakrL~d~G~hapt~~~p 836 (939)
T TIGR00461 760 GNEGLPKASVVAILNANYMATRLKDHYPILFVGTLKHVAHECILDLRPLKA---KTGIEAIDVAKRLQDYGFHAPTLSFP 836 (939)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCcccccCCCCceeEEEEEeccchhh---hcCCCHHHHHHHHHhCCeeccccCCc
Confidence 112233433322211101112 1 2222221100 0012367899999999998743
Q ss_pred cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhH
Q 003466 777 LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 812 (818)
Q Consensus 777 ~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~ 812 (818)
....+.+.|+-..|++|||++++++.+.-++++++.
T Consensus 837 v~g~lmiepTE~eskeelD~f~~al~~I~~e~~~~~ 872 (939)
T TIGR00461 837 VPGTLMVEPTESESLEELDRFCDAMIAIKEEINALV 872 (939)
T ss_pred cCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 224888999999999999999999999988887743
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-06 Score=97.48 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=97.7
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCCCCcEE--EecccccC--
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTG-- 693 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgKgLgg-- 693 (818)
++..|++|.. .+..|.+.+ +++|.++|+++|+++|+||++. .+|. .-....+|++ .++|.|+|
T Consensus 132 ~t~lV~le~p-~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~~~-------~p~~~g~Divv~S~sK~l~G~~ 199 (366)
T PRK07582 132 GADLVLAETP-SNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPLGQ-------RPLELGADLVVASDTKALTGHS 199 (366)
T ss_pred CceEEEEECC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCcccc-------CchhcCCcEEEecccccccCCC
Confidence 4567888875 666675554 8999999999999999999983 3321 1112335776 68899976
Q ss_pred Cccccceeecc-hHHHhhccCCh--------H---------------HHH------HHHHHHHHcCCCeeEEE-------
Q 003466 694 GVIPLAATLAT-NAVFDSFVGDS--------K---------------LWD------LELIQQISSHRTVQRVV------- 736 (818)
Q Consensus 694 Gy~PlsAvl~~-~~i~~~l~~~~--------~---------------~~~------~~l~~~l~~~~~v~~vr------- 736 (818)
| +.+|+++++ +++++.+.... . .++ ..+.+.|+++|.|..|.
T Consensus 200 g-~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~ 278 (366)
T PRK07582 200 D-LLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGD 278 (366)
T ss_pred C-eeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCC
Confidence 4 346667764 66665443110 0 111 23445567888776665
Q ss_pred -----------eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee--------------------cCCEEEEEC
Q 003466 737 -----------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP--------------------LGNVIYLMC 785 (818)
Q Consensus 737 -----------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p--------------------~g~~ir~~p 785 (818)
|.|.++.|++.+. +.+.++. ...+++... ..+.||++.
T Consensus 279 p~~~~~~~~~~~~gg~~s~~~~~~--------~~~~~~~---~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~sv 347 (366)
T PRK07582 279 PAHEVAARQMRRFGGLVSFELADA--------AAAERFV---AASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSC 347 (366)
T ss_pred ccHHHHHhhCCCCcceEEEEeCCH--------HHHHHHH---HhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEe
Confidence 5788999999522 2232222 233444320 125789988
Q ss_pred CCCChHHHHHHHHHHHH
Q 003466 786 GPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 786 pl~~t~edId~~~~~l~ 802 (818)
-+-..++.|+.+.++|+
T Consensus 348 GlE~~~dli~dl~~al~ 364 (366)
T PRK07582 348 GIEDTDDLVADLERALD 364 (366)
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 87666555555555543
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-06 Score=95.63 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=106.8
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCC
Q 003466 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (818)
Q Consensus 419 p~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~ 498 (818)
++-.+++.+.+..... ...+...+|.+.++++++. +.+++++||++|+..+++.. . -..|
T Consensus 10 ~~~~~~v~~~~~~~~~-----~~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~~~l~al-~---~~~G-------- 69 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFL-----TQGPTVPAFEEALAEYVGA---KYAVAFNSATSALHIACLAL-G---VGPG-------- 69 (380)
T ss_pred HHHHHHHHHHHhcCCc-----cCChhHHHHHHHHHHHHCC---CeEEEEcCHHHHHHHHHHHc-C---CCCC--------
Confidence 4457777777765321 1235568899999999874 46677789999999999865 1 0112
Q ss_pred CccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC-cchhhhhcccccc
Q 003466 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKD 577 (818)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~~ 577 (818)
..||+....|++.. .++...|... ..+++ |+.+
T Consensus 70 --------d~Viv~~~~~~~~~-~~~~~~G~~~----------------------------~~~~~~~~~~--------- 103 (380)
T TIGR03588 70 --------DRVWTTPITFVATA-NCALYCGAKV----------------------------DFVDIDPDTG--------- 103 (380)
T ss_pred --------CEEEeCCcchHHHH-HHHHHcCCEE----------------------------EEEecCCCcC---------
Confidence 36777777776542 2222222110 00000 0000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
..| .+.+++.+.+. ...++.+|++ + . ..|...+ +++|.++|++||+++
T Consensus 104 --~~d------------------~~~l~~~i~~~----~~~~t~~v~~--~-~-~~G~~~~----~~~i~~l~~~~~~~l 151 (380)
T TIGR03588 104 --NID------------------EDALEKKLAAA----KGKLPKAIVP--V-D-FAGKSVD----MQAIAALAKKHGLKI 151 (380)
T ss_pred --CcC------------------HHHHHHHhhcc----cCCCceEEEE--e-C-CCCccCC----HHHHHHHHHHcCCEE
Confidence 011 25566666521 1134556552 2 2 2354443 899999999999999
Q ss_pred EEeecccCcccCCccchhcccCC--CCcEEEec----ccccCCccccceeecc-hHHHh
Q 003466 658 IFDEVFTGFWRLGVETTADLLGC--VPDIACYG----KLLTGGVIPLAATLAT-NAVFD 709 (818)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv--~PDivtlg----KgLggGy~PlsAvl~~-~~i~~ 709 (818)
|.|++|+ +|-+ +.-...|. --|+.++| |.++.| ..|+++.. +++.+
T Consensus 152 I~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~ 204 (380)
T TIGR03588 152 IEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAE 204 (380)
T ss_pred EEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc--CceEEEECCHHHHH
Confidence 9999995 4321 11122343 45999877 888754 34556653 44443
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-06 Score=98.55 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=111.3
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh--cc---cC---CCCcE----E
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--DL---LG---CVPDI----A 685 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~--e~---~g---v~PDi----v 685 (818)
.++.+|++-. .+.-.|.+. +.+-+++|.++|++||+++|.||++..+-..|..+.. +. ++ +.||. .
T Consensus 198 ~~~k~l~l~n-P~NPTG~~~-s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~ 275 (496)
T PLN02376 198 KKVKGLILTN-PSNPLGTML-DKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVY 275 (496)
T ss_pred CCeeEEEEcC-CCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEE
Confidence 3566555443 277788766 8899999999999999999999999876333432211 11 11 23452 3
Q ss_pred Eeccccc-CCccccceeec-chHHHhhccC------ChH-------------HH-HH--------------HHHHHHHcC
Q 003466 686 CYGKLLT-GGVIPLAATLA-TNAVFDSFVG------DSK-------------LW-DL--------------ELIQQISSH 729 (818)
Q Consensus 686 tlgKgLg-gGy~PlsAvl~-~~~i~~~l~~------~~~-------------~~-~~--------------~l~~~l~~~ 729 (818)
+|||.+| .| +-+|.+++ .+.+.+.+.. .+. .+ .+ .+.+.++++
T Consensus 276 S~SK~~glpG-lRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~ 354 (496)
T PLN02376 276 SLSKDMGLPG-FRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA 354 (496)
T ss_pred eccccCCCCc-ceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7999997 77 79999998 4555443211 010 11 10 112233333
Q ss_pred CCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHH
Q 003466 730 RTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLK 800 (818)
Q Consensus 730 ~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~ 800 (818)
+ +..+. ..|+++-+++...... .........+++.+++ .||.+.|+ .+.+|++... .+++++++.+++
T Consensus 355 g-i~~~~~~aG~flwi~l~~~~~~-~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~r 431 (496)
T PLN02376 355 D-IACLTSNAGLFAWMDLRHLLRD-RNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGR 431 (496)
T ss_pred C-CcccCCCceEEEEEEchhhhcc-CCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHH
Confidence 2 22222 3456666666432100 0011123567888876 59999983 2467777653 567999999999
Q ss_pred HHHHHHHHH
Q 003466 801 LYQRLEEFD 809 (818)
Q Consensus 801 l~~~l~~l~ 809 (818)
|.+++.+..
T Consensus 432 l~~~l~~~~ 440 (496)
T PLN02376 432 IQDFVSKNK 440 (496)
T ss_pred HHHHHHHhh
Confidence 999986543
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-06 Score=96.40 Aligned_cols=185 Identities=12% Similarity=0.125 Sum_probs=111.0
Q ss_pred CCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh--c---ccCC-C-Cc-E---
Q 003466 617 SGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--D---LLGC-V-PD-I--- 684 (818)
Q Consensus 617 ~~~iAAVIv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~--e---~~gv-~-PD-i--- 684 (818)
+.++.++++ .| ++-.|... +++.+++|.++|++|++.+|.||++..+--.+..|.+ + ..+. . ++ +
T Consensus 198 ~~~vk~lll~nP--~NPtG~~~-s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi 274 (447)
T PLN02607 198 NIRVRGVLITNP--SNPLGATV-QRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIV 274 (447)
T ss_pred CCCeeEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEE
Confidence 346665555 45 66677755 7999999999999999999999999763111111211 1 1121 1 34 2
Q ss_pred EEeccccc-CCccccceeec-chHHHhhccCC------hH------------------HHH---H-------HHHHHHHc
Q 003466 685 ACYGKLLT-GGVIPLAATLA-TNAVFDSFVGD------SK------------------LWD---L-------ELIQQISS 728 (818)
Q Consensus 685 vtlgKgLg-gGy~PlsAvl~-~~~i~~~l~~~------~~------------------~~~---~-------~l~~~l~~ 728 (818)
..|||.+| .| +-+|++++ ++++.+.+... +. .+. + .+.+.|++
T Consensus 275 ~s~SK~fg~~G-lRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~ 353 (447)
T PLN02607 275 YSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRR 353 (447)
T ss_pred EcchhcCCCCc-ceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37999998 78 79999887 56665433211 11 000 0 12233444
Q ss_pred CCCeeEEEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHH
Q 003466 729 HRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 729 ~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~ 799 (818)
++ +..+.. .|+++-+++...- ..+.......+++++++ +||++.|+ .+.+|++... .+++++++.++
T Consensus 354 ~g-i~~~~~~ag~fvw~~L~~~~--~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~ 429 (447)
T PLN02607 354 AG-IECLKGNAGLFCWMNLSPLL--ETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALK 429 (447)
T ss_pred CC-CCcccCCeeEEEEEEchHhh--cCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHH
Confidence 43 222333 4667767764210 00111223467777765 69999873 1466666543 46899999999
Q ss_pred HHHHHHHHHH
Q 003466 800 KLYQRLEEFD 809 (818)
Q Consensus 800 ~l~~~l~~l~ 809 (818)
+|.+++++-+
T Consensus 430 Ri~~~l~~~~ 439 (447)
T PLN02607 430 RIHRFMDRRK 439 (447)
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.2e-06 Score=94.49 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=102.1
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccCCCCcEE---Eeccccc-CCc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGV 695 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgKgLg-gGy 695 (818)
..+++-| +...|... +.+-+++|.++|+++|+++|.||++..|-..+.. .....+.-.+.++ +|||.++ .|
T Consensus 172 ~v~i~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG- 247 (403)
T TIGR01265 172 AIVVINP--SNPCGSVF-SRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPG- 247 (403)
T ss_pred EEEEecC--CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCc-
Confidence 3444555 56677655 7888999999999999999999999877444432 1222221112233 7999854 46
Q ss_pred cccceeecch--H-----HHhhcc-------CChH--------HHH------------------HHHHHHHHcCCCeeEE
Q 003466 696 IPLAATLATN--A-----VFDSFV-------GDSK--------LWD------------------LELIQQISSHRTVQRV 735 (818)
Q Consensus 696 ~PlsAvl~~~--~-----i~~~l~-------~~~~--------~~~------------------~~l~~~l~~~~~v~~v 735 (818)
+-+|.+++.. + +.+.+. .... .+. +.+.+.++.++.+..+
T Consensus 248 lRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 327 (403)
T TIGR01265 248 WRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCP 327 (403)
T ss_pred ceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 6888888731 1 222211 0000 111 1123334444433322
Q ss_pred Ee-eeeEEEEEEecCcccCCCchHHHHHHHHHH-HhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 736 VA-LGTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 736 rg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l-~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.. .|.++-+++..... ........++..| .++||.+.|+ .+.+|++.. ..++.+++.+++|.+.+++
T Consensus 328 ~p~~g~f~~~~~~~~~~---~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 328 KPEGAMYLMVKLELELF---PEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITIT--VPESMLEEACSRIKEFCER 401 (403)
T ss_pred CCCceeEEEEecccccc---CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 33 35555555542210 0001244677775 5789999873 257787765 4578899999998887754
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.6e-06 Score=91.78 Aligned_cols=298 Identities=10% Similarity=0.028 Sum_probs=165.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~AL 478 (818)
.+||+..|.. .++- .+.+.+++.+.......+....+..+....+++.+.+..+.+ .-+.+++++++.+|...++
T Consensus 25 ~~i~l~~~~p--~~~~--~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~ 100 (374)
T PRK05839 25 KGLDLTIGEP--QFET--PKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFP 100 (374)
T ss_pred CeEEcCCCCC--CCCC--CHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence 7888887643 3442 578888888766543333322344466777888887754421 1357999888888887776
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
++.. . ... ...|++..-+|.+....+ ...|..
T Consensus 101 ~~~~--~-~~~----------------gd~vlv~~P~y~~~~~~~-~~~g~~---------------------------- 132 (374)
T PRK05839 101 QFVL--F-DKQ----------------NPTIAYPNPFYQIYEGAA-IASRAK---------------------------- 132 (374)
T ss_pred HHHh--c-CCC----------------CCEEEECCCCchhhHHHH-HhcCCE----------------------------
Confidence 6541 0 011 135667677776533222 111111
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCccc
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHM 637 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iA-AVIvEPV~~g~gG~~~ 637 (818)
.+++|-.. +..|.. +..+..+. ++. .+|..| ++-.|.+.
T Consensus 133 --v~~v~~~~---------------~~~~~~------------d~~~~~~~---------~~k~v~i~nP--~NPTG~~~ 172 (374)
T PRK05839 133 --VLLMPLTK---------------ENDFTP------------SLNEKELQ---------EVDLVILNSP--NNPTGRTL 172 (374)
T ss_pred --EEEeeccc---------------ccCCcC------------Ccchhhhc---------cccEEEEeCC--CCCcCccc
Confidence 11111000 000000 00001111 233 444555 77788877
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc----CC-C-CcE---EEeccccc-CCccccceeecchHH
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL----GC-V-PDI---ACYGKLLT-GGVIPLAATLATNAV 707 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~----gv-~-PDi---vtlgKgLg-gGy~PlsAvl~~~~i 707 (818)
+.+.+++|.++|++||+++|.||++..|...+........ +. . +.+ -+|||.++ .| +-+|.+++++++
T Consensus 173 -s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~ii~~~~~ 250 (374)
T PRK05839 173 -SLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPG-LRSGFIAGDASI 250 (374)
T ss_pred -CHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcc-ceeEEEecCHHH
Confidence 7889999999999999999999999776321222111110 00 1 222 37999865 56 799999999988
Q ss_pred HhhccCCh-------H---------HH---------HHHHH---HHHH-cCCCeeEEEeeeeEEEEEEecCcccCCCchH
Q 003466 708 FDSFVGDS-------K---------LW---------DLELI---QQIS-SHRTVQRVVALGTLCAIELQAAGCNAGYGSL 758 (818)
Q Consensus 708 ~~~l~~~~-------~---------~~---------~~~l~---~~l~-~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~ 758 (818)
++.+.... . .+ .+.+. +.+. ..+ +. .-..|.++-+.+. +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~p~gg~fi~~~~~-~--------- 318 (374)
T PRK05839 251 LKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREILG-IT-IPPATFYVWLPVD-N--------- 318 (374)
T ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcC-CC-CCCeeEEEEEeCC-C---------
Confidence 77543210 0 00 01111 1111 111 11 1122444444442 1
Q ss_pred HHHHHHHHHHh-CCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLRE-DGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 759 ~a~~~~~~l~e-~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
...++++|++ +||.+.|+ .+.+|++.. .+++++.+++++|.+.++
T Consensus 319 -~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 319 -DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV--YDTPKLEKALEIIKTYLE 373 (374)
T ss_pred -hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhh
Confidence 2457788875 99999972 257888764 468999999999988764
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-07 Score=100.36 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=105.2
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|+++.+. +.+++++||++|+..++.... +.| ..||+.+..|.+
T Consensus 61 r~~~pt~~~Le~~lA~l~g~---~~~l~~~sgt~Ai~~~l~al~-----~~G----------------D~Vl~~~~~y~~ 116 (394)
T PRK07050 61 LHATPTSLALAQRLAEIEGG---RHALLQPSGLAAISLVYFGLV-----KAG----------------DDVLIPDNAYGP 116 (394)
T ss_pred CCCCHHHHHHHHHHHHHhCC---CeEEEeccHHHHHHHHHHHHh-----CCC----------------CEEEEecCCccc
Confidence 34577789999999999873 689999999999999997651 233 267777777764
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.. ..+... .. . .|. ... +-|. .+
T Consensus 117 ~~-~~~~~~-~~--~----------~Gi-------------~v~-----------------~vd~-------~~------ 139 (394)
T PRK07050 117 NR-DHGEWL-AR--D----------FGI-------------TVR-----------------FYDP-------LI------ 139 (394)
T ss_pred HH-HHHHHH-HH--h----------cCe-------------EEE-----------------EECC-------CC------
Confidence 32 111000 00 0 000 000 0000 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.+. .+..+|++|.. .+..| +...+++|.++|+++|+++|+||++. .| ..+.-..+
T Consensus 140 --~~~l~~~i~--------~~tklV~le~p-~Np~~----~~~di~~I~~ia~~~gi~livD~a~a-~~---~~~~~l~~ 200 (394)
T PRK07050 140 --GAGIADLIQ--------PNTRLIWLEAP-GSVTM----EVPDVPAITAAARARGVVTAIDNTYS-AG---LAFKPFEH 200 (394)
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCc----cHhhHHHHHHHHHHcCCEEEEECCcc-cc---cccCHHHc
Confidence 033555553 34678899875 44443 55669999999999999999999984 22 21111122
Q ss_pred CCCCcEE--EecccccCCc-cccceeec-chHHHhhc
Q 003466 679 GCVPDIA--CYGKLLTGGV-IPLAATLA-TNAVFDSF 711 (818)
Q Consensus 679 gv~PDiv--tlgKgLggGy-~PlsAvl~-~~~i~~~l 711 (818)
| .|++ .++|.++||- .+.|++++ ++++++.+
T Consensus 201 G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~ 235 (394)
T PRK07050 201 G--VDISVQALTKYQSGGSDVLMGATITADAELHAKL 235 (394)
T ss_pred C--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHH
Confidence 4 4776 5899997542 46787776 56666544
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-06 Score=94.97 Aligned_cols=290 Identities=12% Similarity=0.117 Sum_probs=159.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+..+. +.+| - .|++.+|+.+....+..+. ...-.+|.+.+++.++-. -+.++++++++++...++.
T Consensus 37 ~~i~l~~~~--~~~~-~-~~~~~~al~~~~~~~~~Y~-----~~~g~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 106 (371)
T PRK05166 37 RIAKLGSNE--NPLG-P-SPAVRRAFADIAELLRLYP-----DPQGRALREAIAARTGVP-ADRIILGNGSEDLIAVICR 106 (371)
T ss_pred ceEEcCCCC--CCCC-C-CHHHHHHHHHHHHHhhcCC-----CCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHH
Confidence 678887642 3344 3 6789988887544432221 111125667777766532 3589999988888877776
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... +.| ..|+...-+|.+.. ......|..
T Consensus 107 ~~~-----~~g----------------d~vli~~P~y~~~~-~~~~~~g~~----------------------------- 135 (371)
T PRK05166 107 AVL-----RPG----------------DRVVTLYPSFPLHE-DYPTMMGAR----------------------------- 135 (371)
T ss_pred Hhc-----CCC----------------CEEEEcCCChHHHH-HHHHHcCCe-----------------------------
Confidence 541 222 25677666665422 111111111
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
.+.+|... + +. + + .+.+++.+.. ..++ .++..| ++-.|.+. +
T Consensus 136 -~~~v~~~~--------~--~~-----~----~--------~~~l~~~~~~------~~~~-v~l~~p--~NPtG~~~-~ 177 (371)
T PRK05166 136 -VERVTVTP--------D--LG-----F----D--------LDALCAAVAR------APRM-LMFSNP--SNPVGSWL-T 177 (371)
T ss_pred -EEEeecCC--------C--CC-----C----C--------HHHHHHhhhc------CCCE-EEEeCC--CCCCCCCC-C
Confidence 00111000 0 00 0 0 1445555541 1122 344555 67788877 6
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCc-c-chhccc-CCCCcEE---Eeccccc-CCccccceeec-chHHHhhc
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLL-GCVPDIA---CYGKLLT-GGVIPLAATLA-TNAVFDSF 711 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~-~a~e~~-gv~PDiv---tlgKgLg-gGy~PlsAvl~-~~~i~~~l 711 (818)
.+.+++|.++|++ ++++|+||++.-|- .+. . .....+ ...+.++ +|||.+| .| +.+|.+++ ++++++.+
T Consensus 178 ~~~~~~l~~~~~~-~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~G-lRiG~~i~~~~~l~~~~ 254 (371)
T PRK05166 178 ADQLARVLDATPP-ETLIVVDEAYAEYA-AGDDYPSALTLLKARGLPWIVLRTFSKAYGLAG-LRVGYGLVSDPELVGLL 254 (371)
T ss_pred HHHHHHHHHhCCC-CcEEEEECcHHHhc-CCcCcccHHHHHhhcCCCEEEEeechHhhhcch-hheeeeecCCHHHHHHH
Confidence 7778888888865 88999999987663 221 1 111111 1122333 6999998 78 79999765 67776654
Q ss_pred cCCh------H--------------HHH----------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHH
Q 003466 712 VGDS------K--------------LWD----------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 712 ~~~~------~--------------~~~----------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
.... . .++ +.+.+.|+.++. .-....|.++-+.+.. .+.
T Consensus 255 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~p~~g~fl~~~~~~----------~~~ 323 (371)
T PRK05166 255 DRVRTPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEMGY-RIAPSRANFLFFDARR----------PAS 323 (371)
T ss_pred HHhccCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcC-eeCCCcCCEEEEeCCC----------CHH
Confidence 2110 0 000 123344555532 2123345554443321 145
Q ss_pred HHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+++.|.++||++.|. .+.+|+... ++++.++++++|+..+
T Consensus 324 ~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 324 AVAEALLRQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVAALDKVL 369 (371)
T ss_pred HHHHHHHHCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 6888999999999874 256888775 4667777777776653
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-07 Score=103.62 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=47.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG 693 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg 693 (818)
+..+|++|.. .+..|.+. .+++|.++|++||+++|+||++ +.+-.+.. .+.-.|++ .+.|.|+|
T Consensus 217 ~TklV~lesP-sNPtG~i~----Dl~~I~~lAk~~g~~lIVD~A~-a~~~~~~p-----l~~gaDivv~S~tK~l~G 282 (464)
T PLN02509 217 QTKLVWLESP-TNPRQQIS----DIRKIAEMAHAQGALVLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAG 282 (464)
T ss_pred CCeEEEEECC-CCCCCCHH----HHHHHHHHHHHcCCEEEEECCc-cccccCCh-----hhcCCcEEEecCcccccC
Confidence 5678999987 67777654 4999999999999999999998 33333332 22346876 57899986
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-06 Score=96.87 Aligned_cols=310 Identities=14% Similarity=0.062 Sum_probs=167.3
Q ss_pred CHHHHHHHHHhhhhcc----cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhccccc
Q 003466 418 QIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~ 492 (818)
...+.+++.+.++... .+....+..+....+++.+....+.. ..+.|++++++++|+..+++... ...|
T Consensus 90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~----~~~g-- 163 (481)
T PTZ00377 90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLI----GDPS-- 163 (481)
T ss_pred CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc----cCCC--
Confidence 4577788776555432 12222344556677777776542211 12589999999999999998661 1222
Q ss_pred ccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhc
Q 003466 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (818)
Q Consensus 493 ~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (818)
..|++..-+|.+....+ ...|.. .+.+|-..
T Consensus 164 --------------D~Vlv~~P~y~~y~~~~-~~~g~~------------------------------~v~v~~~~---- 194 (481)
T PTZ00377 164 --------------DGVMIPIPQYPLYSAAI-TLLGGK------------------------------QVPYYLDE---- 194 (481)
T ss_pred --------------CEEEECCCCchhHHHHH-HHcCCE------------------------------EEEEEecc----
Confidence 25777777777643221 111111 01111000
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCcccCCHHHHHHHHHHHH
Q 003466 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (818)
Q Consensus 573 ~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iA-AVIvEPV~~g~gG~~~~p~~fl~~LreLc~ 651 (818)
+ + .|. -+ .+.+++.+.... ....++. .+++-| ++-.|.+. +.+-+++|.++|+
T Consensus 195 ----~---~----~~~--~d--------~~~l~~~l~~~~--~~~~~~k~l~l~~P--~NPTG~~~-s~e~~~~i~~~a~ 248 (481)
T PTZ00377 195 ----E---K----GWS--LD--------QEELEEAYEQAV--RNGITPRALVVINP--GNPTGQVL-TRDVMEEIIKFCY 248 (481)
T ss_pred ----c---c----CCC--CC--------HHHHHHHHHHHH--hcCCCeeEEEEECC--CCCCCcCC-CHHHHHHHHHHHH
Confidence 0 0 000 00 145555554210 1122454 455666 67788876 8999999999999
Q ss_pred hcCCcEEEeecccCcccCC-ccc-hh-c-ccCCCCc------EE---Eeccccc--CCccccceeec---chHHHhhccC
Q 003466 652 NRKIPVIFDEVFTGFWRLG-VET-TA-D-LLGCVPD------IA---CYGKLLT--GGVIPLAATLA---TNAVFDSFVG 713 (818)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG-~~~-a~-e-~~gv~PD------iv---tlgKgLg--gGy~PlsAvl~---~~~i~~~l~~ 713 (818)
+||+++|.||++..+--.+ ..+ .. . ..+..++ ++ .|||++. .| +-+|.+++ ++++++.+..
T Consensus 249 ~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~ 327 (481)
T PTZ00377 249 EKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECG-RRGGYFELTNIPPEVREQIYK 327 (481)
T ss_pred HCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCc-CceEEEEEeCCCHHHHHHHHH
Confidence 9999999999997652212 111 11 0 0122221 33 5899864 46 68888875 7777664421
Q ss_pred ChH---------------HH-------------HH--------------HHHHHHHcCCCeeEEEeeeeEEEE-EEecCc
Q 003466 714 DSK---------------LW-------------DL--------------ELIQQISSHRTVQRVVALGTLCAI-ELQAAG 750 (818)
Q Consensus 714 ~~~---------------~~-------------~~--------------~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~~ 750 (818)
... .+ .+ .+.+.|+.++.+.-....|.++.+ .+....
T Consensus 328 ~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~ 407 (481)
T PTZ00377 328 LASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPE 407 (481)
T ss_pred HhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCch
Confidence 100 11 00 012334445444444455544443 332110
Q ss_pred ccCCCc----hHHHHHH-HHHHHhCCceEeec---C-----CEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 751 CNAGYG----SLYAASL-LKKLREDGVYMRPL---G-----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 751 ~~~~~~----~~~a~~~-~~~l~e~Gvlv~p~---g-----~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
...... ......+ ...|.++||.+.|+ + +.+|++.. .+++++++++++|.+.++++.+.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~~~~ 479 (481)
T PTZ00377 408 KAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMVKKIKEFHESFMKK 479 (481)
T ss_pred hhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 0001223 34556789999873 1 36888765 66889999999999998876544
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-06 Score=95.44 Aligned_cols=220 Identities=13% Similarity=0.072 Sum_probs=120.3
Q ss_pred ceeecccccccccCCCCC-CHHHHHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhccCCC-CCCcE--EEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATL-QIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRA--YFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~-hp~V~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v--~f~~SGseA 473 (818)
..||+..|.-...-++-- .+.+.+|+.+.++... .+....+..+....+++++...-+.. .-+++ +.++++++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 356666554322222220 2678888877664311 12223345566677777775532210 12455 889999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
...++++. ... ..| ..|++-+-+|.+.... ....|...
T Consensus 107 l~~~~~~l-~~~--~pG----------------d~Vlv~~P~y~~~~~~-~~~~g~~~---------------------- 144 (396)
T PRK09257 107 LRVGADFL-KRA--FPD----------------AKVWVSDPTWPNHRAI-FEAAGLEV---------------------- 144 (396)
T ss_pred HHHHHHHH-HHh--CCC----------------CeEEECCCCcccHHHH-HHHcCCcE----------------------
Confidence 99988754 111 223 2688888888774322 22222110
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
+++|. .+.+ .+. -+ .+.+++.+.. ...+..++++-. .++-.
T Consensus 145 --------v~v~~--------------~~~~-~~~--~d--------~~~l~~~~~~-----~~~~~~~~i~~~-p~NPT 185 (396)
T PRK09257 145 --------KTYPY--------------YDAA-TKG--LD--------FDAMLADLSQ-----APAGDVVLLHGC-CHNPT 185 (396)
T ss_pred --------EEEec--------------cccc-cCc--cC--------HHHHHHHHHh-----CCCCCEEEEeCC-CCCCC
Confidence 11110 0000 000 00 2456666642 122223444333 37888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccC-Cc-cchh-cccCCCCcE---EEecccccC-Cccccceee
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GV-ETTA-DLLGCVPDI---ACYGKLLTG-GVIPLAATL 702 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRt-G~-~~a~-e~~gv~PDi---vtlgKgLgg-Gy~PlsAvl 702 (818)
|.+. +.+.+++|.++|++||+++|.||+...|.-. +. .... ...+..+.+ ..|||.++- | +-+|.++
T Consensus 186 G~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRiG~~~ 259 (396)
T PRK09257 186 GADL-TPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYG-ERVGALS 259 (396)
T ss_pred CCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcccc-ccceeEE
Confidence 8877 8999999999999999999999999887422 11 1111 111112223 379999984 7 6888876
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-06 Score=100.03 Aligned_cols=179 Identities=15% Similarity=0.089 Sum_probs=105.7
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++....|+++|+++.+. +.++.++||++|+..++.... ..| ..||+.+..|.|.
T Consensus 80 ~~~Pt~~~Le~~lA~leg~---~~~iv~~sG~~Ai~~~l~al~-----~~G----------------d~Vv~~~p~Y~~~ 135 (427)
T PRK07049 80 FNHPNSEIVEDRLAVYEGA---ESAALFSSGMSAIATTLLAFV-----RPG----------------DVILHSQPLYGGT 135 (427)
T ss_pred CCCcCHHHHHHHHHHHhCC---CcEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEcCCCcccH
Confidence 4466778999999998873 578889999999888887551 122 2677777788764
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
......... ..| ...+.+|+ ..|
T Consensus 136 ~~~~~~~l~--------------~~G-------------i~~v~~~~-------------~~d----------------- 158 (427)
T PRK07049 136 ETLLAKTFR--------------NFG-------------VGAVGFAD-------------GLS----------------- 158 (427)
T ss_pred HHHHHHHHH--------------hcC-------------cEEEEEeC-------------CCC-----------------
Confidence 321110000 000 00011110 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh---cCCcEEEeecccCcccCCccchhc
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN---RKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~---~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
.+.+++.+.+. ....++.+|++|.. ++..|.+. +.+-+.+|.+.|.+ +|+++|+||+..++-... ..
T Consensus 159 -~~~l~~~l~~~---~~~~~tklv~lesP-~NPtg~v~-d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~---pl- 228 (427)
T PRK07049 159 -EAAIGAAAEAA---AAKGRVSLILIETP-ANPTNSLV-DVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK---PL- 228 (427)
T ss_pred -HHHHHHHHHhh---ccCCCceEEEEECC-CCCCCccc-CHHHHHHHHHHhhhcccCCCEEEEECCccccccCC---cc-
Confidence 02334444321 11246789999985 88888776 44444444444322 899999999965431111 01
Q ss_pred ccCCCCcEE--EecccccC--CccccceeecchHHHhhcc
Q 003466 677 LLGCVPDIA--CYGKLLTG--GVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 677 ~~gv~PDiv--tlgKgLgg--Gy~PlsAvl~~~~i~~~l~ 712 (818)
.+| .|++ +++|.++| | +-+|++++++++++.+.
T Consensus 229 ~~g--~divv~S~SK~~gG~~g-lr~G~vv~~~~l~~~l~ 265 (427)
T PRK07049 229 EHG--ADLSVYSLTKYVGGHSD-LVAGAVLGRKALIRQVR 265 (427)
T ss_pred ccC--CCEEEEcCceeecCCCC-cEEEEEECCHHHHHHHH
Confidence 123 4766 79999995 5 57888899888877653
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-06 Score=98.43 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=85.6
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGV 695 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy 695 (818)
.++.+|++|.. .+..|.+.+ +++|.++|++||+++|+|+++. .+-.... .+.-.|++ ...|.++|.-
T Consensus 130 ~~tklv~le~p-snptg~v~d----l~~I~~la~~~g~~vivD~a~~-~~~~~~~-----l~~g~Di~v~S~tK~l~G~~ 198 (378)
T TIGR01329 130 PKTKLVLLESP-TNPLQKIVD----IRKISEMAHAQNALVVVDNTMM-SPLLCNP-----LELGADIVYHSATKFLAGHS 198 (378)
T ss_pred cCceEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCc-ccccCCh-----hhcCCcEEEEecceeccCCc
Confidence 35779999976 677787775 9999999999999999999983 2221111 12235876 5789887621
Q ss_pred -cccceeecc-hHHHhhcc---C--ChH------------------HHH------HHHHHHHHcCCCeeEE---------
Q 003466 696 -IPLAATLAT-NAVFDSFV---G--DSK------------------LWD------LELIQQISSHRTVQRV--------- 735 (818)
Q Consensus 696 -~PlsAvl~~-~~i~~~l~---~--~~~------------------~~~------~~l~~~l~~~~~v~~v--------- 735 (818)
.=.|+++++ +++.+.+. . +.. .++ ..+.+.|++||.+..|
T Consensus 199 ~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p 278 (378)
T TIGR01329 199 DVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHP 278 (378)
T ss_pred cceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCc
Confidence 124555564 44433221 1 100 111 1234445666655433
Q ss_pred ---------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC
Q 003466 736 ---------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG 778 (818)
Q Consensus 736 ---------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g 778 (818)
.|.|.+++|++. .. ..+..|...|...++-++.+|
T Consensus 279 ~~~l~~~~~~g~~~~~sf~~~-~~-------~~~~~~~~~L~~~~i~~s~G~ 322 (378)
T TIGR01329 279 GFHLHFSQAKGAGSVLSFETG-SV-------ALSKRLVEATKLFSITVSFGS 322 (378)
T ss_pred cHHHHHHhCCCcceEEEEEEC-CH-------HHHHHHHHhCcCcccccCCCC
Confidence 367789999993 31 346678888865565555433
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-06 Score=97.57 Aligned_cols=184 Identities=17% Similarity=0.177 Sum_probs=104.7
Q ss_pred HHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCC
Q 003466 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKD 499 (818)
Q Consensus 420 ~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~ 499 (818)
+-.+++.+.++.... .+..+...+++++|++.++ .+++++++||++|...++..+. -..|
T Consensus 12 ~~~~~~~~~l~~~~~----~g~~~~~~~~e~~la~~~g---~~~~v~~~sgt~al~~~l~~~~----~~~G--------- 71 (375)
T PRK11706 12 TELDYIQQAMSSGKL----CGDGGFTRRCQQWLEQRFG---SAKVLLTPSCTAALEMAALLLD----IQPG--------- 71 (375)
T ss_pred HHHHHHHHHHHcCCc----cCCCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHhC----CCCC---------
Confidence 346667766654321 1234667889999999887 3689999999999998887650 1112
Q ss_pred ccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccccc
Q 003466 500 TTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579 (818)
Q Consensus 500 ~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~ 579 (818)
..||+-..+|.+ +..++...|.... +.+. -++.+
T Consensus 72 -------d~Viv~~~t~~~-~~~~~~~~G~~~v--------------~~d~-------------d~~~~----------- 105 (375)
T PRK11706 72 -------DEVIMPSYTFVS-TANAFVLRGAKIV--------------FVDI-------------RPDTM----------- 105 (375)
T ss_pred -------CEEEECCCCcHH-HHHHHHHcCCEEE--------------EEec-------------CCCcC-----------
Confidence 357776666654 3333333332110 0000 00000
Q ss_pred ccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEE
Q 003466 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIF 659 (818)
Q Consensus 580 ~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~ 659 (818)
..| .+.+++.+. .++.+|++ + +. .|.... +++|.++|++||+++|.
T Consensus 106 ~~d------------------~~~le~~i~--------~~tk~i~~--~-~~-~G~~~~----~~~i~~la~~~~i~vIe 151 (375)
T PRK11706 106 NID------------------ETLIEAAIT--------PKTRAIVP--V-HY-AGVACE----MDTIMALAKKHNLFVVE 151 (375)
T ss_pred CcC------------------HHHHHHhcC--------CCCeEEEE--e-CC-CCCccC----HHHHHHHHHHcCCEEEE
Confidence 011 145666654 23455553 3 22 354433 78999999999999999
Q ss_pred eecccCcccCCccchhcccCCCCcEEEec----ccccCCccccceeec-chHHHh
Q 003466 660 DEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLA-TNAVFD 709 (818)
Q Consensus 660 DEV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~-~~~i~~ 709 (818)
|++| ++|..-.. ...|---|+.+|| |.++.|- -|+++. ++++++
T Consensus 152 D~a~-a~g~~~~~---~~~g~~~~~~~~Sf~~~K~l~~g~--gG~~~~~~~~~~~ 200 (375)
T PRK11706 152 DAAQ-GVMSTYKG---RALGTIGHIGCFSFHETKNYTAGE--GGALLINDPALIE 200 (375)
T ss_pred ECcc-ccccccCC---eeeecCcCEEEEeCCCCccccccC--CeEEEECCHHHHH
Confidence 9999 45542110 1122234888988 9996441 233444 466654
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=99.78 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=55.6
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC-Cc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg-Gy 695 (818)
+..+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++.. +-.... ..+| .|++ .++|.++| |
T Consensus 150 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~-~~~~~~---~~~g--aDivv~S~sK~l~g~g- 217 (398)
T PRK07504 150 NTKVFFLESP-TNPTLEVID----IAAVAKIANQAGAKLVVDNVFAT-PLFQKP---LELG--AHIVVYSATKHIDGQG- 217 (398)
T ss_pred CceEEEEECC-CCCCcEecC----HHHHHHHHHHcCCEEEEECCccc-cccCCc---hhhC--CCEEEeeccccccCCc-
Confidence 5678999986 677777775 99999999999999999999852 111111 1223 5776 46899976 4
Q ss_pred cccc-eeecchHHHh
Q 003466 696 IPLA-ATLATNAVFD 709 (818)
Q Consensus 696 ~Pls-Avl~~~~i~~ 709 (818)
..+| +++++++.+.
T Consensus 218 ~~~GG~vv~~~~~i~ 232 (398)
T PRK07504 218 RCLGGVVLSDKAWIE 232 (398)
T ss_pred cceEEEEEeCcHHHH
Confidence 4664 5666666543
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-06 Score=98.23 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=99.8
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccc
Q 003466 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (818)
Q Consensus 622 AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~P 697 (818)
.+|..| ++-.|... +.+.+++|.+.|++ ++++|+||++.-|.. .........-.|.++ +|||.+| .| +-
T Consensus 149 v~l~nP--nNPTG~~~-~~~~l~~l~~~~~~-~~~vivDEay~~f~~--~~s~~~~~~~~~n~iv~rSfSK~~glaG-lR 221 (351)
T PRK01688 149 VYVCSP--NNPTGNLI-NPQDLRTLLELTRG-KAIVVADEAYIEFCP--QASLAGWLAEYPHLVILRTLSKAFALAG-LR 221 (351)
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECchhhcCC--CCChHHHHhhCCCEEEEecchHhhcCHH-HH
Confidence 455566 67778877 77788888888876 689999999977731 111112222234543 7999988 66 67
Q ss_pred cceeecchHHHhhccCChH--------------HHH------------------HHHHHHHHcCCCeeEEE-eeeeEEEE
Q 003466 698 LAATLATNAVFDSFVGDSK--------------LWD------------------LELIQQISSHRTVQRVV-ALGTLCAI 744 (818)
Q Consensus 698 lsAvl~~~~i~~~l~~~~~--------------~~~------------------~~l~~~l~~~~~v~~vr-g~Gl~~~i 744 (818)
+|.+++++++++.+..... .+. +.+.+.|+.++.+..+. ..|.++-+
T Consensus 222 iGy~i~~~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~ 301 (351)
T PRK01688 222 CGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILA 301 (351)
T ss_pred HhHHhCCHHHHHHHHhccCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEE
Confidence 7889999988776532110 110 12333444454332222 23333333
Q ss_pred EEecCcccCCCchHHHHHHHHHHHhCCceEeec------CCEEEEECCCCChHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------g~~ir~~ppl~~t~edId~~~~~l 801 (818)
.+. + +..+.+.|+++||++++. .+.+|++.. +++|+++++++|
T Consensus 302 ~~~-~----------~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~---~~~e~~~l~~al 350 (351)
T PRK01688 302 RFT-A----------SSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG---TREECQRVIDAL 350 (351)
T ss_pred EcC-C----------HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC---CHHHHHHHHHhh
Confidence 332 1 456888999999999863 256888764 689999999877
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-06 Score=92.06 Aligned_cols=162 Identities=17% Similarity=0.192 Sum_probs=99.9
Q ss_pred EEEEEE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CC
Q 003466 620 IGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GG 694 (818)
Q Consensus 620 iAAVIv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gG 694 (818)
+.++++ .| ++-.|.+.+ .++|.++|++ ++++|+||++.-| ..|..-.....+. ++++ +|||.++ .|
T Consensus 140 ~~~i~l~np--~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~-~~~~~~~l~~~~~-~~~i~i~S~SK~~~l~G 210 (349)
T PRK07908 140 ADLVVIGNP--TNPTSVLHP----AEQLLALRRP-GRILVVDEAFADA-VPGEPESLAGDDL-PGVLVLRSLTKTWSLAG 210 (349)
T ss_pred CCEEEEcCC--CCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhh-ccCCccccccccC-CCEEEEeecccccCCcc
Confidence 335544 55 788888885 3467888864 7888899999765 2333211111221 3433 6799998 77
Q ss_pred ccccceeecchHHHhhccCCh------H--------H--------H----------HHHHHHHHHcCCCeeEEE-eeeeE
Q 003466 695 VIPLAATLATNAVFDSFVGDS------K--------L--------W----------DLELIQQISSHRTVQRVV-ALGTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~------~--------~--------~----------~~~l~~~l~~~~~v~~vr-g~Gl~ 741 (818)
+.+|.+++++++++.+.... . . + .+.+.+.++++. +.-.. ..|.+
T Consensus 211 -lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~~p~~g~~ 288 (349)
T PRK07908 211 -LRVGYALGAPDVLARLTRGRAHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVG-ARVVDPAAAPF 288 (349)
T ss_pred -ceeeeeecCHHHHHHHHhcCCCCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCC-cEeccCCCceE
Confidence 68999999988877653210 0 0 0 011233444442 22222 23555
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+-+.+.. +..+.+.|.++||++.++ .+.+|++. .+++|+++++++|++.+.
T Consensus 289 ~~~~~~~-----------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 289 VLVRVPD-----------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILK 346 (349)
T ss_pred EEEECCc-----------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence 5554431 346778888999999873 26788887 468899999999987654
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.3e-06 Score=93.75 Aligned_cols=160 Identities=13% Similarity=0.165 Sum_probs=99.3
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-h-hcccCCCCcEEEeccccc-CCccc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-T-ADLLGCVPDIACYGKLLT-GGVIP 697 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a-~e~~gv~PDivtlgKgLg-gGy~P 697 (818)
..++..| ++-.|.... .+ ++.+++ ++++++|.||++.-|. +..+ . .+.+.-.-=+-+|||.++ .| +-
T Consensus 141 ~i~i~nP--~NPTG~~~s-~~---~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~vi~~~S~SK~~~l~G-lR 210 (335)
T PRK14808 141 VVFIPNP--NNPTGHVFE-RE---EIERIL-KTGAFVALDEAYYEFH--GESYVDLLKKYENLAVIRTFSKAFSLAA-QR 210 (335)
T ss_pred EEEEeCC--CCCCCCCcC-HH---HHHHHH-hcCCEEEEECchhhhc--CCchHHHHHhCCCEEEEEechhhccCcc-cc
Confidence 3555666 677788774 44 445555 5899999999998773 2211 1 111111111237999999 77 78
Q ss_pred cceeecchHHHhhccCChH--------------H------HH----------HHHHHHHHcCCCeeEEEeeeeEEEEEEe
Q 003466 698 LAATLATNAVFDSFVGDSK--------------L------WD----------LELIQQISSHRTVQRVVALGTLCAIELQ 747 (818)
Q Consensus 698 lsAvl~~~~i~~~l~~~~~--------------~------~~----------~~l~~~l~~~~~v~~vrg~Gl~~~iel~ 747 (818)
+|.+++++++++.+..... . +. +.+.+.++.++ +.-....|.++-+.+.
T Consensus 211 vG~~v~~~~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~g~f~~~~l~ 289 (335)
T PRK14808 211 IGYVVSSEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG-YRITDSRGNFVFIFME 289 (335)
T ss_pred eEEEEeCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEECCCCCeEEEEeCC
Confidence 9999999998876632110 0 00 11223344443 2222345666656554
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
.. ....+.+.|.++||+++...+.+|++. -+.++.++++++|++
T Consensus 290 ~~---------~~~~~~~~l~~~Gi~V~~~~~~~Risi---~~~~~~~~~~~~l~~ 333 (335)
T PRK14808 290 KE---------EKERLLEHLRAKNIAVRSFREGVRITI---GKREENDMILKELEV 333 (335)
T ss_pred Cc---------cHHHHHHHHHHCCeEEEECCCCeEEec---CCHHHHHHHHHHHHh
Confidence 22 135678899999999998767788875 346888888888764
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-06 Score=98.29 Aligned_cols=80 Identities=16% Similarity=0.029 Sum_probs=53.1
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccC-Cc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG-GV 695 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLgg-Gy 695 (818)
++.+|++|.. .+..|.+.+ +++|.++|++||+++|+|++++.. -.+. ..+.-.|++++ .|.++| |-
T Consensus 134 ~t~lV~lesP-~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~-----p~~~gaDivv~S~tK~l~g~~d 202 (380)
T PRK06176 134 NTKALYLETP-SNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQN-----PLLLGADIVVHSGTKYLGGHSD 202 (380)
T ss_pred CceEEEEECC-CCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCC-----ccccCCCEEEecCceeccCCcc
Confidence 5788999875 666777665 889999999999999999998532 1222 12334688765 588875 21
Q ss_pred cccceeecc-hHHHh
Q 003466 696 IPLAATLAT-NAVFD 709 (818)
Q Consensus 696 ~PlsAvl~~-~~i~~ 709 (818)
.=.|+++++ +++++
T Consensus 203 ~~gG~vv~~~~~~~~ 217 (380)
T PRK06176 203 VVAGLVTTNNEALAQ 217 (380)
T ss_pred ceeeEEEecHHHHHH
Confidence 113345553 45544
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.4e-06 Score=95.23 Aligned_cols=184 Identities=17% Similarity=0.169 Sum_probs=109.6
Q ss_pred CcEEEEEEc-cccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch--hccc------CC-CCc----
Q 003466 618 GCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLL------GC-VPD---- 683 (818)
Q Consensus 618 ~~iAAVIvE-PV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a--~e~~------gv-~PD---- 683 (818)
.++.+|++- | ++-.|... +.+.+++|.++|++||+++|.||+...+--.+..+. .... +. .++
T Consensus 190 ~~~k~v~l~nP--~NPTG~~~-s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~ 266 (468)
T PLN02450 190 LKVKGVLITNP--SNPLGTTT-TRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHI 266 (468)
T ss_pred CCeeEEEEecC--CCCCCccc-CHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEE
Confidence 355544444 6 67777766 889999999999999999999999986522332221 1111 11 122
Q ss_pred EEEeccccc-CCccccceeecchH-HHhhccC------ChH--------H----------HH----------HHHHHHHH
Q 003466 684 IACYGKLLT-GGVIPLAATLATNA-VFDSFVG------DSK--------L----------WD----------LELIQQIS 727 (818)
Q Consensus 684 ivtlgKgLg-gGy~PlsAvl~~~~-i~~~l~~------~~~--------~----------~~----------~~l~~~l~ 727 (818)
+-+|||.++ .| +-+|.++++++ +.+.+.. .+. . +. +.+.+.|+
T Consensus 267 l~S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~ 345 (468)
T PLN02450 267 VYSLSKDLGLPG-FRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLE 345 (468)
T ss_pred EEeccccCCCCC-ccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999998 78 79999999744 4433211 010 0 00 01223344
Q ss_pred cCCCeeEEEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHH
Q 003466 728 SHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLL 798 (818)
Q Consensus 728 ~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~ 798 (818)
+++. .-+.. .|+++-+.+..... .........+++.|+ ++||.+.|+ .+.+|++... .+++++++.+
T Consensus 346 ~~gi-~~~~~~~g~flwi~l~~~~~--~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l 421 (468)
T PLN02450 346 AAGI-KCLKSNAGLFCWVDMRHLLK--SNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAM 421 (468)
T ss_pred HcCC-cccCCCceEEEEEEchHhcC--cCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHH
Confidence 4432 22222 45565566542110 001122345667766 579999884 2467776654 5689999999
Q ss_pred HHHHHHHHHHH
Q 003466 799 LKLYQRLEEFD 809 (818)
Q Consensus 799 ~~l~~~l~~l~ 809 (818)
++|.+++.+..
T Consensus 422 ~ri~~~l~~~~ 432 (468)
T PLN02450 422 KRLKSFVESDS 432 (468)
T ss_pred HHHHHHHHhcc
Confidence 99999886643
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=98.70 Aligned_cols=168 Identities=13% Similarity=0.057 Sum_probs=100.7
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +..+.++||++|+..++.... ..| ..||+.+..|.+.
T Consensus 58 ~~~p~~~~Le~~lA~~~g~---~~~i~~~sG~~Ai~~~l~all-----~~G----------------d~Vl~~~~~y~~t 113 (388)
T PRK07811 58 TGNPTRTALEEQLAALEGG---AYGRAFSSGMAATDCLLRAVL-----RPG----------------DHIVIPNDAYGGT 113 (388)
T ss_pred CCCccHHHHHHHHHHHhCC---CceEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEcCCCchHH
Confidence 3456688999999998874 456667899999999988651 222 2678777777542
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. ..+... .. ..+.. +.+.|. .+
T Consensus 114 ~-~~~~~~-~~------------~~gi~------------------------------~~~~d~-------~d------- 135 (388)
T PRK07811 114 F-RLIDKV-FT------------RWGVE------------------------------YTPVDL-------SD------- 135 (388)
T ss_pred H-HHHHHh-Cc------------CCCeE------------------------------EEEeCC-------CC-------
Confidence 2 111110 00 00000 001110 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. .++.+|++|.. .+..|.... +++|.++|++||+++|+||++. .+-.+.. .+
T Consensus 136 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a-~~~~~~p-----~~ 195 (388)
T PRK07811 136 -LDAVRAAIT--------PRTKLIWVETP-TNPLLSITD----IAALAELAHDAGAKVVVDNTFA-SPYLQQP-----LA 195 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCcceecC----HHHHHHHHHHcCCEEEEECCCC-ccccCCc-----hh
Confidence 145555553 25679999865 566665544 9999999999999999999984 2222221 12
Q ss_pred CCCcEE--EecccccC-Cccccceeecc-hHHHh
Q 003466 680 CVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFD 709 (818)
Q Consensus 680 v~PDiv--tlgKgLgg-Gy~PlsAvl~~-~~i~~ 709 (818)
.-.|++ .++|.++| |-.-.|+++++ +++.+
T Consensus 196 ~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~ 229 (388)
T PRK07811 196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDE 229 (388)
T ss_pred hCCcEEEecCceeecCCCCcEEEEEEECCHHHHH
Confidence 235776 57799986 21224666664 55544
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-06 Score=97.84 Aligned_cols=168 Identities=11% Similarity=0.060 Sum_probs=102.2
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+ .+.+++++||++|+..++.... +.| ..|++.+.+|.+.
T Consensus 50 ~~npt~~~Le~~lA~leg---~e~ivvt~gg~~Ai~~~l~all-----~~G----------------d~Il~~~~~y~~~ 105 (388)
T PRK08861 50 SGNPNRGLLEQTLSELES---GKGAVVTNCGTSALNLWVSALL-----GPD----------------DLIVAPHDCYGGT 105 (388)
T ss_pred CCCchHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHc-----CCC----------------CEEEEcCCchHHH
Confidence 446778899999999987 3799999999999999997551 222 2577767766542
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. ..+..... +. + .....++ ..|
T Consensus 106 ~-~~~~~~~~---~~----------g-------------i~v~~vd--------------~~d----------------- 127 (388)
T PRK08861 106 Y-RLFNTRAN---KG----------D-------------FKVQFVD--------------QSD----------------- 127 (388)
T ss_pred H-HHHHHHHh---cC----------C-------------eEEEEEC--------------CCC-----------------
Confidence 2 11100000 00 0 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhccc
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~ 678 (818)
.+.+++.+. +++.+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++. |+.. .-.
T Consensus 128 -~e~l~~~i~--------~~tklV~lesP-~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~~-------~pl 186 (388)
T PRK08861 128 -AAALDAALA--------KKPKLILLETP-SNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVLQ-------KPL 186 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCccccccC-------CCc
Confidence 134555553 35678999875 777787776 7899999999999999999984 2211 112
Q ss_pred CCCCcEE--EecccccCC-ccccceeecc-hHHHhh
Q 003466 679 GCVPDIA--CYGKLLTGG-VIPLAATLAT-NAVFDS 710 (818)
Q Consensus 679 gv~PDiv--tlgKgLggG-y~PlsAvl~~-~~i~~~ 710 (818)
.+-.|++ .+.|-++|. =.-.|+++++ +++++.
T Consensus 187 ~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~ 222 (388)
T PRK08861 187 ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEE 222 (388)
T ss_pred ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHH
Confidence 2346776 577888762 1224556564 455443
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.8e-06 Score=96.07 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCceEe----ec----CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMR----PL----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~----p~----g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+++++|.++|+.+. +. .+.+|++++...|++||++++++|++.+
T Consensus 393 ~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 393 AEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred HHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 4578999999988742 21 3589999998899999999999998654
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-06 Score=94.52 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=107.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CC
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GG 694 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gG 694 (818)
++.+|++... ++-.|.+. +.+-++++.+.|+ +++++|+||++..|.. .. ......+..+.++ +|||.+| .|
T Consensus 152 ~~~lv~l~~p-~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~-~~-~~~~~~~~~~~vi~~~SfSK~~gl~G 226 (364)
T PRK04781 152 NAKLVFLCSP-SNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSD-VP-SAVGLLARYDNLAVLRTLSKAHALAA 226 (364)
T ss_pred CCeEEEEcCC-CCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcC-Cc-chHHHHhhCCCEEEEecChhhccccc
Confidence 4455555443 78888877 5666777777775 4899999999987742 11 1111122234433 8999998 77
Q ss_pred ccccceeecchHHHhhccCChH--------------HH------------------HHHHHHHHHcCCCee-EEEeeeeE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK--------------LW------------------DLELIQQISSHRTVQ-RVVALGTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~--------------~~------------------~~~l~~~l~~~~~v~-~vrg~Gl~ 741 (818)
+-+|.+++++++++.+..... .+ ++.+.+.++.++.+. .....|.+
T Consensus 227 -lRvGy~v~~~~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f 305 (364)
T PRK04781 227 -ARIGSLIANAELIAVLRRCQAPYPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNF 305 (364)
T ss_pred -ceeeeeeCCHHHHHHHHhccCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcE
Confidence 799999999999886642211 00 012334455554432 23345666
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+-+++. + +..+.+.|.++||++++. ++.+|++.. ++++.++++++|++..
T Consensus 306 ~~~~~~-~----------~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 306 LLVRFD-D----------AEAAFQALLAAGVVVRDQRAAPRLSDALRITLG---TPEQNDRVLAALQRTQ 361 (364)
T ss_pred EEEEcC-C----------HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHHH
Confidence 655553 1 346788899999999884 256888764 5789999998887654
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=8e-06 Score=101.62 Aligned_cols=319 Identities=13% Similarity=0.071 Sum_probs=179.2
Q ss_pred EEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCC--CCcEE
Q 003466 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW--ASRAY 465 (818)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~--l~~v~ 465 (818)
++++.+|. .+|++..|. +.++ - +|.|++|+.+.+.+..+. .+..+....+++++++..|-.. -+.++
T Consensus 690 ~~~~~~g~----~vI~LsinE--~d~p-p-Pp~V~eAi~eal~~~~~s---~g~pdlr~aLa~~la~~~Gv~~d~~e~II 758 (1082)
T PLN02672 690 SVSGSQES----SLIHMDVDE--SFLP-V-PSAVKASIFESFVRQNIS---ESETDPRPSILQFIKSNYGFPTDSCTEFV 758 (1082)
T ss_pred CCcccCCC----CEEEEeCCC--CCCC-C-CHHHHHHHHHHHhhcCCC---CCChHHHHHHHHHHHHHhCcCCCCCCEEE
Confidence 46666777 888887643 3344 3 789999999887654331 1234567889999988655321 12577
Q ss_pred EeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCC
Q 003466 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (818)
Q Consensus 466 f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~ 545 (818)
++++..++...++... . ..| ..|++...+|......+- ..|..
T Consensus 759 vt~Gs~elL~lll~aL----l-~pG----------------D~VLVp~PtY~~Y~~~a~-~~Ga~--------------- 801 (1082)
T PLN02672 759 YGDTSLALFNKLVLCC----V-QEG----------------GTLCFPAGSNGTYVSAAK-FLKAN--------------- 801 (1082)
T ss_pred EeCCHHHHHHHHHHHH----c-CCC----------------CEEEEeCCChHHHHHHHH-HcCCE---------------
Confidence 7776666665665544 1 222 368888888876432221 11211
Q ss_pred cccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 003466 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (818)
Q Consensus 546 ~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv 625 (818)
.+.+|-.. +..|+ .| .+.+++.+.. ..+.+.+++
T Consensus 802 ---------------vv~Vpl~~---------------e~gf~--lD--------~d~Le~al~~------~~~~~I~L~ 835 (1082)
T PLN02672 802 ---------------FRRIPTKS---------------SDGFK--LT--------AKTLASTLET------VKKPWVYIS 835 (1082)
T ss_pred ---------------EEEEeccc---------------ccCCC--CC--------HHHHHHHhcc------CCCCEEEEE
Confidence 01111000 00000 00 1456666642 123357788
Q ss_pred ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc---hh----ccc-CCCC--cEE---Eeccccc
Q 003466 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TA----DLL-GCVP--DIA---CYGKLLT 692 (818)
Q Consensus 626 EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~---a~----e~~-gv~P--Div---tlgKgLg 692 (818)
-|- ++-.|.+. +.+.+++|.++|++||+++|.||++.++--.|+.+ .. ..+ ...+ .++ +|||..+
T Consensus 836 nPn-hNPTG~v~-S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~ 913 (1082)
T PLN02672 836 GPT-INPTGLLY-SNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL 913 (1082)
T ss_pred CcC-CCCcCccC-CHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc
Confidence 884 47778765 89999999999999999999999998664344321 00 011 1112 122 6888776
Q ss_pred -CCccccceeecch-HHHhhccCC-------h--H-----H---H-------H--------------HHHHHHHHcCCCe
Q 003466 693 -GGVIPLAATLATN-AVFDSFVGD-------S--K-----L---W-------D--------------LELIQQISSHRTV 732 (818)
Q Consensus 693 -gGy~PlsAvl~~~-~i~~~l~~~-------~--~-----~---~-------~--------------~~l~~~l~~~~~v 732 (818)
.| +-+|.+++++ ++++.+... . . . + . +.+.+.++.++ +
T Consensus 914 lpG-LRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~G-i 991 (1082)
T PLN02672 914 SGG-HEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACG-W 991 (1082)
T ss_pred cHH-HHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 45 7888899854 466655321 0 0 0 0 0 01223334443 2
Q ss_pred eEEEeeeeEEEE-EEecCc-cc---CCCc-----hHHHHHHHHHHHhC-CceEeec---C--CEEEEECCCCChHHHHHH
Q 003466 733 QRVVALGTLCAI-ELQAAG-CN---AGYG-----SLYAASLLKKLRED-GVYMRPL---G--NVIYLMCGPCSSPEVCSQ 796 (818)
Q Consensus 733 ~~vrg~Gl~~~i-el~~~~-~~---~~~~-----~~~a~~~~~~l~e~-Gvlv~p~---g--~~ir~~ppl~~t~edId~ 796 (818)
.-....|.++.+ .+..-. .. ..++ ......+++.|+++ ||.+.|+ | +-+|+... .+++++++
T Consensus 992 ~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa--~~~e~Lee 1069 (1082)
T PLN02672 992 DVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFA--LEDSEFDR 1069 (1082)
T ss_pred eEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEec--CCHHHHHH
Confidence 333444444433 221100 00 0000 01246788888865 9999984 2 56777665 47889999
Q ss_pred HHHHHHHHHH
Q 003466 797 LLLKLYQRLE 806 (818)
Q Consensus 797 ~~~~l~~~l~ 806 (818)
++++|.+.++
T Consensus 1070 ALerL~kf~~ 1079 (1082)
T PLN02672 1070 ALKAIARFKE 1079 (1082)
T ss_pred HHHHHHHHHH
Confidence 9999987543
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.2e-06 Score=93.84 Aligned_cols=172 Identities=12% Similarity=0.131 Sum_probs=102.6
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-ch-hcccC---CCCcEEEeccccc-
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TT-ADLLG---CVPDIACYGKLLT- 692 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a-~e~~g---v~PDivtlgKgLg- 692 (818)
++.+|++-. .++-.|.+. +.+-+++|.++|++||+++|.||++..|-..+.. .. ...-+ ..-.+-+|||.+|
T Consensus 173 ~~~~i~l~n-P~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~ 250 (402)
T TIGR03542 173 KIDIIYLCS-PNNPTGTVL-TKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGF 250 (402)
T ss_pred CceEEEEeC-CCCCCCccC-CHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCC
Confidence 344444433 277788766 8889999999999999999999999877322211 11 11111 1112348999997
Q ss_pred CCccccceeecchHHH--------hhcc--------CChH--------HH---------------H---HHHHHHHHcCC
Q 003466 693 GGVIPLAATLATNAVF--------DSFV--------GDSK--------LW---------------D---LELIQQISSHR 730 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~--------~~l~--------~~~~--------~~---------------~---~~l~~~l~~~~ 730 (818)
.| +-+|.++++++++ ..+. ..+. .+ . +.+.+.++.++
T Consensus 251 pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 329 (402)
T TIGR03542 251 TG-VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAG 329 (402)
T ss_pred CC-cceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67 7999999988765 2210 0110 00 0 01223344433
Q ss_pred CeeEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHH
Q 003466 731 TVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 731 ~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l 801 (818)
+.-..+. |.++-+.+... ..+..++..|+ ++||++.|+ .+.+|+.. ..+++++++++++|
T Consensus 330 -~~~~~~~~~~f~~v~l~~~--------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~--~~~~~~l~~~l~~l 398 (402)
T TIGR03542 330 -FKVYGGEHAPYLWVKTPEG--------ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSA--FGKRENIVEACERI 398 (402)
T ss_pred -ceecCCCceeEEEEECCCC--------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHH
Confidence 2112233 44444554321 11446777777 579999873 25678873 34789999999998
Q ss_pred HHH
Q 003466 802 YQR 804 (818)
Q Consensus 802 ~~~ 804 (818)
.++
T Consensus 399 ~~~ 401 (402)
T TIGR03542 399 KEA 401 (402)
T ss_pred Hhh
Confidence 765
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-05 Score=90.21 Aligned_cols=171 Identities=12% Similarity=0.107 Sum_probs=103.5
Q ss_pred cEEEEE-EccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCc----EEEeccccc
Q 003466 619 CIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD----IACYGKLLT 692 (818)
Q Consensus 619 ~iAAVI-vEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD----ivtlgKgLg 692 (818)
++.+|+ .-| ++-.|.+. +.+-+++|.++|++||+++|.||++..|-..+... ....+.-.++ +-+|||.+|
T Consensus 176 ~~k~i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~ 252 (409)
T PRK07590 176 KVDIIYLCFP--NNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAG 252 (409)
T ss_pred CceEEEEeCC--CCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccC
Confidence 344444 455 67778766 78899999999999999999999998763223211 1111111122 237999997
Q ss_pred -CCccccceeecchHHHhhc--------------------cCChH--------HHH------------------HHHHHH
Q 003466 693 -GGVIPLAATLATNAVFDSF--------------------VGDSK--------LWD------------------LELIQQ 725 (818)
Q Consensus 693 -gGy~PlsAvl~~~~i~~~l--------------------~~~~~--------~~~------------------~~l~~~ 725 (818)
.| +-+|.+++++++++.+ ...+. .+. +.+.+.
T Consensus 253 ~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~ 331 (409)
T PRK07590 253 FTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREG 331 (409)
T ss_pred CcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77 7999999998887621 00110 010 112233
Q ss_pred HHcCCCeeEEEeee-eEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHH
Q 003466 726 ISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQ 796 (818)
Q Consensus 726 l~~~~~v~~vrg~G-l~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~ 796 (818)
++.++ +.-..+.| .++-+.+... ..+..++..|+ ++||++.|+ .+.+|++. ..+++++++
T Consensus 332 L~~~~-~~~~~~~g~~f~wi~~~~~--------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~ 400 (409)
T PRK07590 332 LESAG-FEVYGGVNAPYIWVKTPDG--------MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSA--FGSRENVLE 400 (409)
T ss_pred HHhcC-CceecCCcceEEEEECCCC--------CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEc--cCCHHHHHH
Confidence 44443 22222333 3444444321 12456777776 579999873 24688873 457899999
Q ss_pred HHHHHHHH
Q 003466 797 LLLKLYQR 804 (818)
Q Consensus 797 ~~~~l~~~ 804 (818)
.+++|.++
T Consensus 401 ~l~rl~~~ 408 (409)
T PRK07590 401 AMERIKKA 408 (409)
T ss_pred HHHHHHhh
Confidence 99998765
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-05 Score=95.20 Aligned_cols=311 Identities=13% Similarity=0.088 Sum_probs=168.9
Q ss_pred CHHHHHHHHHhhhhc-----ccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAARF-----GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~~-----~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
..++++++.+.++.. +.++...+..+....+|+.+.+..|.. ..+.+++++++++|+..++++.. ...
T Consensus 142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~----~~~-- 215 (534)
T PLN02231 142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI----RSE-- 215 (534)
T ss_pred CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhc----cCC--
Confidence 345556555555432 111222344566777777776643311 13689999999999999998761 111
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (818)
...|++..-+|.+.... +...|.. .+++|-
T Consensus 216 --------------gd~Vli~~P~Y~~y~~~-~~~~g~~------------------------------~v~~~l----- 245 (534)
T PLN02231 216 --------------KDGILCPIPQYPLYSAS-IALHGGT------------------------------LVPYYL----- 245 (534)
T ss_pred --------------CCEEEEeCCCChhHHHH-HHHcCCE------------------------------EEEEec-----
Confidence 23688888888864322 2222211 011110
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
|.+..|. -| .+.|++.++... ....++.+ +++.| ++-.|.+. +.+-+++|.++|
T Consensus 246 ----------~~~~~~~--~d--------~~~Le~~l~~~~--~~~~~~k~ivl~nP--~NPTG~vl-s~e~l~~Iv~~a 300 (534)
T PLN02231 246 ----------DEATGWG--LE--------ISELKKQLEDAR--SKGITVRALVVINP--GNPTGQVL-AEENQRDIVEFC 300 (534)
T ss_pred ----------CcccCCC--CC--------HHHHHHHHHHHh--hcCCCeEEEEEeCC--CCCCCcCC-CHHHHHHHHHHH
Confidence 0000000 00 145556654310 11124554 56666 67788766 899999999999
Q ss_pred HhcCCcEEEeecccCcccC-Cccc-hhcc----cCC---CCcEE---EecccccC--Cccccceeec---chHHHhhccC
Q 003466 651 QNRKIPVIFDEVFTGFWRL-GVET-TADL----LGC---VPDIA---CYGKLLTG--GVIPLAATLA---TNAVFDSFVG 713 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRt-G~~~-a~e~----~gv---~PDiv---tlgKgLgg--Gy~PlsAvl~---~~~i~~~l~~ 713 (818)
++||+++|.|||+.-+--. |+-+ .+.. .|. ...++ .+||++.| | +-+|.+++ ++++++.+..
T Consensus 301 ~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k 379 (534)
T PLN02231 301 KQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQIYK 379 (534)
T ss_pred HHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHHHH
Confidence 9999999999999766221 2221 1111 121 11233 68998743 6 67777765 5666654421
Q ss_pred Ch------H---------HH--------------H------H-------HHHHHHHcCCCeeEEEeeeeEEEE-EEecCc
Q 003466 714 DS------K---------LW--------------D------L-------ELIQQISSHRTVQRVVALGTLCAI-ELQAAG 750 (818)
Q Consensus 714 ~~------~---------~~--------------~------~-------~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~~ 750 (818)
.. . .+ . + .+.+.++.++.+.-....|.|+.+ .+.-..
T Consensus 380 ~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~ 459 (534)
T PLN02231 380 VASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQ 459 (534)
T ss_pred HHhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcH
Confidence 00 0 11 0 0 122334445445444566766665 221110
Q ss_pred ccC----CCchHHHHHHHHHHH-hCCceEeec---C-----CEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhH
Q 003466 751 CNA----GYGSLYAASLLKKLR-EDGVYMRPL---G-----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 812 (818)
Q Consensus 751 ~~~----~~~~~~a~~~~~~l~-e~Gvlv~p~---g-----~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~ 812 (818)
... .........++..|+ +.||.+.|+ + ..+|++. ..++++|++.+++|.+.++++.+.+
T Consensus 460 ~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~--~~~~e~l~eal~RL~~~~~~~~~~~ 532 (534)
T PLN02231 460 KAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVSRLTEFHKSFMDEF 532 (534)
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 000001223566666 579999873 1 2477764 4688999999999999988876544
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-06 Score=96.52 Aligned_cols=153 Identities=14% Similarity=0.046 Sum_probs=95.0
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.+++++||+.|+.+++.... ..| ..||+....| |.
T Consensus 66 ~~~p~~~~Le~~lA~l~g~---~~av~~sSG~aAi~~al~all-----~~G----------------d~Vv~~~~~y-~~ 120 (436)
T PRK07812 66 IMNPTQDVVEQRIAALEGG---VAALLLASGQAAETFAILNLA-----GAG----------------DHIVSSPRLY-GG 120 (436)
T ss_pred CCCchHHHHHHHHHHHhCC---CeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEeCCcc-hH
Confidence 3467788999999999874 578889999999999996441 122 2567666555 43
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
+...+... .. + .|. ..+. ++|. .+
T Consensus 121 t~~~~~~~-l~--~----------~Gi-------------~v~~----------------vdd~-------~d------- 144 (436)
T PRK07812 121 TYNLFHYT-LP--K----------LGI-------------EVSF----------------VEDP-------DD------- 144 (436)
T ss_pred HHHHHHHH-hh--c----------CeE-------------EEEE----------------ECCC-------CC-------
Confidence 32211100 00 0 000 0000 0110 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. .+..+|++|.+ .+..|.+.+ +++|.++|++||+++|+|+++. .+.... ...
T Consensus 145 -~e~l~~ai~--------~~tklV~ie~~-sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a-~~~~~~-----pl~ 204 (436)
T PRK07812 145 -LDAWRAAVR--------PNTKAFFAETI-SNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA-TPYLIR-----PLE 204 (436)
T ss_pred -HHHHHHhCC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccCC-----chh
Confidence 144555553 35679999987 778888887 9999999999999999999884 222211 112
Q ss_pred CCCcEE--EecccccC
Q 003466 680 CVPDIA--CYGKLLTG 693 (818)
Q Consensus 680 v~PDiv--tlgKgLgg 693 (818)
.-.|++ .+.|.++|
T Consensus 205 ~GaDivv~S~tK~lgg 220 (436)
T PRK07812 205 HGADIVVHSATKYLGG 220 (436)
T ss_pred cCCCEEEEecccccCC
Confidence 236775 68899875
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.5e-06 Score=94.74 Aligned_cols=81 Identities=17% Similarity=0.116 Sum_probs=52.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC--C
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG--G 694 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg--G 694 (818)
++.+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++..+ -.... . .+| .|++ .+.|.++| |
T Consensus 138 ~tklV~l~~p-~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~~--~-~~g--~Divv~S~tK~~~G~~~ 206 (390)
T PRK08064 138 NTKLFYVETP-SNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-LLQKP--L-DLG--ADVVLHSATKFLAGHSD 206 (390)
T ss_pred CceEEEEECC-CCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-cccCc--h-hhC--CcEEEeecceeccCCcc
Confidence 5678999975 666777765 899999999999999999998432 11111 1 223 5777 46798874 2
Q ss_pred ccccceeec-chHHHhhc
Q 003466 695 VIPLAATLA-TNAVFDSF 711 (818)
Q Consensus 695 y~PlsAvl~-~~~i~~~l 711 (818)
.+ .|++++ ++++++.+
T Consensus 207 ~l-aG~~v~~~~~~~~~l 223 (390)
T PRK08064 207 VL-AGLAVVKDEELAQKL 223 (390)
T ss_pred ce-eEEEEeCCHHHHHHH
Confidence 11 233444 45665544
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-06 Score=96.29 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=103.8
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|+++.+. +.+++++||++|+..++.... ..| ..|++.+.+|.+
T Consensus 47 R~~~p~~~~le~~lA~l~g~---~~v~~~~gg~~Ai~~~l~all-----~~G----------------D~Vl~~~p~y~~ 102 (382)
T TIGR02080 47 RSGNPTRDLLQQALAELEGG---AGAVVTNTGMSAIHLVTTALL-----GPD----------------DLLVAPHDCYGG 102 (382)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHc-----CCC----------------CEEEEcCCCcHH
Confidence 34567789999999998873 579999999999999887651 122 367777777765
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.......+.+.. + ..+. +.|. .+
T Consensus 103 ~~~~~~~~~~~~--------------~--------------~~v~----------------~~d~-------~d------ 125 (382)
T TIGR02080 103 TYRLLNALAKKG--------------C--------------FRVL----------------FVDQ-------GD------ 125 (382)
T ss_pred HHHHHHHHHhhc--------------C--------------eEEE----------------EECC-------CC------
Confidence 221111111000 0 0000 0000 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.+. .++.+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++..+ ..-. -+
T Consensus 126 --~~~l~~ai~--------~~tklV~l~~p-~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~-----pl 184 (382)
T TIGR02080 126 --EQALRAALA--------QKPKLVLIETP-SNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSP-ALQN-----PL 184 (382)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-----ch
Confidence 144555553 24678888875 677787765 789999999999999999998422 1111 11
Q ss_pred CCCCcEE--EecccccCC-ccccceeec-chHHHhhc
Q 003466 679 GCVPDIA--CYGKLLTGG-VIPLAATLA-TNAVFDSF 711 (818)
Q Consensus 679 gv~PDiv--tlgKgLggG-y~PlsAvl~-~~~i~~~l 711 (818)
..-.|++ +++|-++|. =+-.|++++ ++++++.+
T Consensus 185 ~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l 221 (382)
T TIGR02080 185 ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEEL 221 (382)
T ss_pred hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHH
Confidence 1234776 689988752 133555555 56665543
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-06 Score=95.34 Aligned_cols=259 Identities=15% Similarity=0.140 Sum_probs=148.8
Q ss_pred CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.++...+|+++|+++-+. +.+++++||++|+..++...+ +.| ..||+.+..|.+..
T Consensus 59 ~npt~~~Le~~iA~le~~---~~~~~~~sG~~Ai~~~l~all-----~~G----------------D~Vvv~~~~Y~~t~ 114 (394)
T PRK09028 59 GTPTHFAFQAAIVELEGG---AGTALYPSGAAAISNALLSFL-----KAG----------------DHLLMVDSCYEPTR 114 (394)
T ss_pred CCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CCC----------------CEEEEECCCcHHHH
Confidence 355677899999998653 578899999999999887541 222 36888888875533
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
.. + +....+ .|.- +.+-|. .+
T Consensus 115 ~l-~---~~~l~~----------~Gi~------------------------------v~~v~~-------~~-------- 135 (394)
T PRK09028 115 DL-C---DKILKG----------FGIE------------------------------TTYYDP-------MI-------- 135 (394)
T ss_pred HH-H---HHhhhh----------cceE------------------------------EEEECC-------CC--------
Confidence 11 0 000000 0000 000000 00
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
.+.+++.+. .++.+|++|.+ .+..|.+. .+++|.++|++||+++|+||+++. +. .+.-...
T Consensus 136 ~e~l~~~l~--------~~TklV~lesp-sNPtg~v~----dl~~I~~la~~~g~~lvvD~t~a~----p~--~~~Pl~~ 196 (394)
T PRK09028 136 GEGIRELIR--------PNTKVLFLESP-GSITMEVQ----DVPTLSRIAHEHDIVVMLDNTWAS----PI--NSRPFEM 196 (394)
T ss_pred HHHHHHhcC--------cCceEEEEECC-CCCCCcHH----HHHHHHHHHHHcCCEEEEECCccc----cc--cCCcccc
Confidence 134555553 35679999986 66666544 499999999999999999999952 21 1222233
Q ss_pred CCcEE--EecccccCC-ccccceeecchHHHhhccCC-----hH------------------HHH------HHHHHHHHc
Q 003466 681 VPDIA--CYGKLLTGG-VIPLAATLATNAVFDSFVGD-----SK------------------LWD------LELIQQISS 728 (818)
Q Consensus 681 ~PDiv--tlgKgLggG-y~PlsAvl~~~~i~~~l~~~-----~~------------------~~~------~~l~~~l~~ 728 (818)
-+|++ ...|-|+|. =.=.|+++.++++.+.+... .. .++ ..+.+-|+.
T Consensus 197 GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~ 276 (394)
T PRK09028 197 GVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLAT 276 (394)
T ss_pred CceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhc
Confidence 46777 578988762 12244566666665533211 00 111 134556778
Q ss_pred CCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHH--hCCc--------eEee----
Q 003466 729 HRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR--EDGV--------YMRP---- 776 (818)
Q Consensus 729 ~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~--e~Gv--------lv~p---- 776 (818)
||.|..| .|.|.|++|++.... .+.+.+|.+.|. ..|. +..|
T Consensus 277 ~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~------~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~ 350 (394)
T PRK09028 277 RPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGD------PKAVTALVEGMQHFKMGFSWGGFESLILGVFGIN 350 (394)
T ss_pred CCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC------HHHHHHHHHhCCcceEecccCCCcceeECCCCcC
Confidence 8877666 367889999996321 133445555443 1111 0001
Q ss_pred ----------cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 777 ----------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 777 ----------~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
.++.|||+.-+ ||.+.+++-|+++|+++.++
T Consensus 351 ~~~~~~~~~~~~~liR~svGl----Ed~~dLi~Dl~~Al~~~~~~ 391 (394)
T PRK09028 351 KLRTATNWDFSKPLIRLHIGL----EDVDDLIADLEAGFERYNAV 391 (394)
T ss_pred ccCchhhhcCCCCeEEEEeCc----CCHHHHHHHHHHHHHHHHHH
Confidence 12455665443 56777777788887776654
|
|
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-06 Score=90.84 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=72.9
Q ss_pred ChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003466 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (818)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (818)
..+.+.+.+..+.+. ||+|||.+.+|+.. .+....... -.||+|++....++..+....+
T Consensus 94 ~~~~l~~~l~~l~~~-------------yD~VIiD~p~~~~~------~~~~~l~~a-d~vliv~~~~~~s~~~~~~~~~ 153 (251)
T TIGR01969 94 DPDKLEDVLKEIIDD-------------TDFLLIDAPAGLER------DAVTALAAA-DELLLVVNPEISSITDALKTKI 153 (251)
T ss_pred CHHHHHHHHHHHHhh-------------CCEEEEeCCCccCH------HHHHHHHhC-CeEEEEECCCCchHHHHHHHHH
Confidence 445666777666544 99999999876532 222222222 3488999999888988888877
Q ss_pred HHHhCCCcEEEEEEccCCCC----CHHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 273 SLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 273 ~l~~~~~~v~gvi~N~~~~~----~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
.++..+.++.|+|+|++... ..+.+++.+ ++|+++ ||+.+..
T Consensus 154 ~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~~--~~~~l~~Ip~~~~~ 200 (251)
T TIGR01969 154 VAEKLGTAILGVVLNRVTRDKTELGREEIETIL--EVPVLGVVPEDPEV 200 (251)
T ss_pred HHHhcCCceEEEEEECCCchhhhhHHHHHHHhh--CCcEEEEecCCHhH
Confidence 77777888999999998432 245566666 899999 9987764
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-05 Score=90.42 Aligned_cols=291 Identities=18% Similarity=0.186 Sum_probs=164.9
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|+|.+|+.+++-- |.+ .-......++-++|...++..+.+-+++..||+-|+|+|+.-.. .+|
T Consensus 17 ~~~V~~am~~~~~~--h~s--~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~-----~pg------- 80 (383)
T COG0075 17 PPRVLLAMARPMVG--HRS--PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV-----EPG------- 80 (383)
T ss_pred CHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc-----CCC-------
Confidence 67777777765422 211 12245666777888887774322456788999999999998662 222
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (818)
.++++..++.-|.-..=+.-.... .+..+..+ |
T Consensus 81 ---------dkVLv~~nG~FG~R~~~ia~~~g~---------------------------~v~~~~~~-w---------- 113 (383)
T COG0075 81 ---------DKVLVVVNGKFGERFAEIAERYGA---------------------------EVVVLEVE-W---------- 113 (383)
T ss_pred ---------CeEEEEeCChHHHHHHHHHHHhCC---------------------------ceEEEeCC-C----------
Confidence 378888887777543322211100 00111111 0
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
+. .-+ .+.+++.|++. ..-+-++.+-.|. ..|+.-| +++|.++|++||+++
T Consensus 114 ---g~-------~v~--------p~~v~~~L~~~---~~~~~V~~vH~ET----STGvlnp----l~~I~~~~k~~g~l~ 164 (383)
T COG0075 114 ---GE-------AVD--------PEEVEEALDKD---PDIKAVAVVHNET----STGVLNP----LKEIAKAAKEHGALL 164 (383)
T ss_pred ---CC-------CCC--------HHHHHHHHhcC---CCccEEEEEeccC----cccccCc----HHHHHHHHHHcCCEE
Confidence 00 000 25677777631 1112345555564 3578777 999999999999999
Q ss_pred EEeecccCcccCCccchhcccCCCCcEEE--ecccccC--CccccceeecchHHHhhccCChH-----------------
Q 003466 658 IFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG--GVIPLAATLATNAVFDSFVGDSK----------------- 716 (818)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLgg--Gy~PlsAvl~~~~i~~~l~~~~~----------------- 716 (818)
|+|=|-+ || |..+-.+.||| |+++ -=|+|++ | +|.+..+++..+.+.....
T Consensus 165 iVDaVsS-~G--g~~~~vd~wgi--Dv~itgSQK~l~~PPG---la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~ 236 (383)
T COG0075 165 IVDAVSS-LG--GEPLKVDEWGI--DVAITGSQKALGAPPG---LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKK 236 (383)
T ss_pred EEEeccc-CC--CcccchhhcCc--cEEEecCchhccCCCc---cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhc
Confidence 9998874 53 45666777877 5554 4489986 5 4667888888776654321
Q ss_pred ---------------------HHHHHHHHHHHcCCCe-----eEEEeeeeEEEEEEecCccc-----CCCchHHHHHHHH
Q 003466 717 ---------------------LWDLELIQQISSHRTV-----QRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLK 765 (818)
Q Consensus 717 ---------------------~~~~~l~~~l~~~~~v-----~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~ 765 (818)
++++.+.++.++|... ..++..|+-+-.+-. .... ..|.......+..
T Consensus 237 ~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~-~~s~tvta~~~P~g~~~~~~~~ 315 (383)
T COG0075 237 GSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFADPE-RRSPTVTAIKVPEGVDDKKVRR 315 (383)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcc-cCCCceEEEECCCCCCcHHHHH
Confidence 1112222222333211 112222222111000 0000 0011111222233
Q ss_pred HHH-hCCceEee-----cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 766 KLR-EDGVYMRP-----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 766 ~l~-e~Gvlv~p-----~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.++ +.|+.+.+ .|..+|+--.=..+..++..++.+|+.+|.++.
T Consensus 316 ~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 316 ALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred HHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 455 45888875 347889888778999999999999999999873
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-05 Score=88.61 Aligned_cols=175 Identities=13% Similarity=0.114 Sum_probs=106.7
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc---EEEecccccCCccc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD---IACYGKLLTGGVIP 697 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD---ivtlgKgLggGy~P 697 (818)
+.++..| ++-.|.+. +.+-+++|.++|++||+++|.||++.-+ .....+....-...+. +.+|||....| +-
T Consensus 182 ~i~l~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~~~~~~vI~~~SfSK~~~pG-lR 256 (416)
T PRK09440 182 AICVSRP--TNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATPLWNPNIILCMSLSKLGLPG-VR 256 (416)
T ss_pred EEEEecC--CCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCccccCCeEEEecccccCCCc-ce
Confidence 3444455 78888877 7899999999999999999999999421 1110000000001122 33799975567 79
Q ss_pred cceeecchHHHhhccCChH---------------------HH----HH-----------HHHHHHHcC-CC--eeEEEee
Q 003466 698 LAATLATNAVFDSFVGDSK---------------------LW----DL-----------ELIQQISSH-RT--VQRVVAL 738 (818)
Q Consensus 698 lsAvl~~~~i~~~l~~~~~---------------------~~----~~-----------~l~~~l~~~-~~--v~~vrg~ 738 (818)
+|.+++++++++.+..... .+ .+ .+.+.+.++ +. +.-+...
T Consensus 257 iG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~ 336 (416)
T PRK09440 257 CGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPE 336 (416)
T ss_pred EEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCC
Confidence 9999999988776532110 00 00 111223222 21 2223344
Q ss_pred -eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----C---------CEEEEECCCCChHHHHHHHHHHHHH
Q 003466 739 -GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----G---------NVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 739 -Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g---------~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
|.++-+++.... ..+..+++.|.++||.+.|+ + +.+|++.. .+++++++++++|.+
T Consensus 337 gg~fiw~~~~~~~-------~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~ 407 (416)
T PRK09440 337 GAIFLWLWFKDLP-------ITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILAE 407 (416)
T ss_pred CceEEEEECCCCC-------CCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHHH
Confidence 455555554310 12456778889999999872 1 25777765 368999999999999
Q ss_pred HHHHHH
Q 003466 804 RLEEFD 809 (818)
Q Consensus 804 ~l~~l~ 809 (818)
++++..
T Consensus 408 ~~~~~~ 413 (416)
T PRK09440 408 EVEKAY 413 (416)
T ss_pred HHHHHh
Confidence 887643
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.8e-06 Score=94.47 Aligned_cols=203 Identities=15% Similarity=0.168 Sum_probs=121.7
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.++.++||.+|+..++.+. +.| ..||+....|+|.
T Consensus 51 ~~~p~~~~le~~lA~leg~---~~~v~~~sG~aAi~~~l~~l------~~G----------------D~VI~~~~~yg~~ 105 (364)
T PRK07269 51 TKNPTRAKLEETLAAIESA---DYALATSSGMSAIVLAFSVF------PVG----------------SKVVAVRDLYGGS 105 (364)
T ss_pred CCCccHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHh------CCC----------------CEEEEecCCcCch
Confidence 4467788999999999873 68999999999999998532 222 2677777766543
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
... +.... + .+.+. ++|+. |
T Consensus 106 ~~~-~~~~~----------------------~-----~~~~~----------------~~~~~---------d------- 125 (364)
T PRK07269 106 FRW-FNQQE----------------------K-----EGRFH----------------FTYAN---------T------- 125 (364)
T ss_pred HHH-HHHHH----------------------h-----cCcEE----------------EEecC---------C-------
Confidence 210 00000 0 00000 00110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. .+..+|++|.. .+-.|.... +++|.++|+++|+++|+||++.. +.. +...+
T Consensus 126 -~~~l~~~i~--------~~TklV~lesP-~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~----~~~--~~pl~ 185 (364)
T PRK07269 126 -EEELIAAIE--------EDTDIVYIETP-TNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS----PIY--QRPIE 185 (364)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc----ccc--CCchh
Confidence 144555553 24568888875 565665554 99999999999999999999621 111 12234
Q ss_pred CCCcEEE--ecccccC-Cccccceeec-chHHHhhccC-----ChH------------------HHH------HHHHHHH
Q 003466 680 CVPDIAC--YGKLLTG-GVIPLAATLA-TNAVFDSFVG-----DSK------------------LWD------LELIQQI 726 (818)
Q Consensus 680 v~PDivt--lgKgLgg-Gy~PlsAvl~-~~~i~~~l~~-----~~~------------------~~~------~~l~~~l 726 (818)
.-.|+++ +.|-++| |=.=.|++++ ++++++.+.. +.. .++ ..+.+.|
T Consensus 186 ~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L 265 (364)
T PRK07269 186 LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFL 265 (364)
T ss_pred hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5578886 5588875 2111234555 4566554321 000 111 1234556
Q ss_pred HcCCCeeEEE--eeeeEEEEEEe
Q 003466 727 SSHRTVQRVV--ALGTLCAIELQ 747 (818)
Q Consensus 727 ~~~~~v~~vr--g~Gl~~~iel~ 747 (818)
+.+|.|..|. |.|.+++|++.
T Consensus 266 ~~~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 266 KKSPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred HhCCCccEEeCCCcCcEEEEEEC
Confidence 7889877665 78999999985
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.7e-06 Score=92.87 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=53.3
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC-Cc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg-Gy 695 (818)
++.+|++|.. .+-.|.+.. +++|.++|++||+++|+||++..-... . ..+ + -.|++ ...|.++| |-
T Consensus 145 ~tklV~l~~P-~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~~-~--pl~-~--gaDivv~S~tK~l~g~~~ 213 (405)
T PRK08776 145 SPKLVLIETP-SNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPALQ-K--PLE-F--GADLVLHSTTKYINGHSD 213 (405)
T ss_pred CCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccccC-C--ccc-c--cCCEEEecCceeecCCCC
Confidence 4567888865 677777654 899999999999999999998532111 1 111 2 34776 46688875 21
Q ss_pred cccceeec-chHHHhhc
Q 003466 696 IPLAATLA-TNAVFDSF 711 (818)
Q Consensus 696 ~PlsAvl~-~~~i~~~l 711 (818)
.-.|++++ ++++.+.+
T Consensus 214 ~~~G~vv~~~~~l~~~l 230 (405)
T PRK08776 214 VVGGAVVARDAELHQQL 230 (405)
T ss_pred ceEEEEEeCCHHHHHHH
Confidence 34566655 46665544
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=90.12 Aligned_cols=185 Identities=16% Similarity=0.098 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCC
Q 003466 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (818)
Q Consensus 419 p~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~ 498 (818)
.+..+++.+.++.-.. +...+...++++++++.++ ...++.++||+.|...|++.+ +-
T Consensus 5 ~e~~~~v~~~l~s~~~----~~~g~~~~~fE~~~a~~~g---~~~~~~~~sgt~Al~~al~~l-----~~---------- 62 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWL----STYGPYVEEFEKEFAEYFG---VKYAVAVSSGTSALHLALRAL-----GL---------- 62 (363)
T ss_dssp HHHHHHHHHHHHHTCC----SSSSHHHHHHHHHHHHHHT---SSEEEEESSHHHHHHHHHHHT-----TG----------
T ss_pred HHHHHHHHHHHHhCCc----cCCCHHHHHHHHHHHHHhC---CCeEEEeCChhHHHHHHHHhc-----CC----------
Confidence 3556666676665421 2225789999999999998 479999999999999999986 21
Q ss_pred CccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccc
Q 003466 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (818)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~ 578 (818)
.....||+-.-+|.+.......++..+.+ .|. -|+.+
T Consensus 63 -----~~gdeVi~p~~t~~~~~~ai~~~G~~pv~---------------~Di-------------~~~~~---------- 99 (363)
T PF01041_consen 63 -----GPGDEVIVPAYTFPATASAILWAGAEPVF---------------VDI-------------DPETL---------- 99 (363)
T ss_dssp -----GTTSEEEEESSS-THHHHHHHHTT-EEEE---------------E-B-------------ETTTS----------
T ss_pred -----CcCceEecCCCcchHHHHHHHHhccEEEE---------------Eec-------------cCCcC----------
Confidence 11247888877777644333322211100 000 00000
Q ss_pred cccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEE
Q 003466 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (818)
Q Consensus 579 ~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI 658 (818)
-.| .+.+++.|. .+..|||+=-+ .| ... -+.+|+++|++||+.||
T Consensus 100 -~id------------------~~~~~~~i~--------~~t~ai~~~h~-~G---~~~----d~~~i~~~~~~~~i~lI 144 (363)
T PF01041_consen 100 -NID------------------PEALEKAIT--------PKTKAILVVHL-FG---NPA----DMDAIRAIARKHGIPLI 144 (363)
T ss_dssp -SB-------------------HHHHHHHHH--------TTEEEEEEE-G-GG---B-------HHHHHHHHHHTT-EEE
T ss_pred -CcC------------------HHHHHHHhc--------cCccEEEEecC-CC---Ccc----cHHHHHHHHHHcCCcEE
Confidence 001 256777776 24466666554 33 222 39999999999999999
Q ss_pred EeecccCcccCCccchhcccCCCCcEEEec----ccccCCccccceeecch-HHHh
Q 003466 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATN-AVFD 709 (818)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~~-~i~~ 709 (818)
-|=+|+ +| ..+.-...|-.-|+.||| |.++.|= .|++++++ ++.+
T Consensus 145 eD~a~a-~g---~~~~g~~~G~~gd~~~fSf~~~K~i~~ge--GG~v~~~~~~~~~ 194 (363)
T PF01041_consen 145 EDAAQA-FG---ARYKGRPVGSFGDIAIFSFHPTKIITTGE--GGAVVTNDPELAE 194 (363)
T ss_dssp EE-TTT-TT----EETTEETTSSSSEEEEESSTTSSS-SSS---EEEEESTHHHHH
T ss_pred Eccccc-cC---ceeCCEeccCCCCceEecCCCCCCCcCCC--CeeEEecHHHHHH
Confidence 999995 43 222223344456888887 8886431 35577754 4433
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.5e-05 Score=88.50 Aligned_cols=303 Identities=12% Similarity=-0.035 Sum_probs=166.0
Q ss_pred CCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCCCC-CcEEE--eCChhHHHHHHHHHHHHHhhhc--
Q 003466 415 ATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGWA-SRAYF--SDNGSTAIEIALKMAFRKFSFD-- 488 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~l-~~v~f--~~SGseA~e~ALklA~r~~t~~-- 488 (818)
.. +|++.+++...+... +.....+...+...+.-++++++++.+.- +.+.| +++|||||-.||+.+ |..+..
T Consensus 52 ~~-~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~a-r~~~~~~~ 129 (431)
T TIGR01788 52 WM-EPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAM-KWRWRKRM 129 (431)
T ss_pred CC-CHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHH-HHHHHHHH
Confidence 44 899999998888643 32221122235566666777787764211 24544 799999999999988 432211
Q ss_pred --ccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc
Q 003466 489 --HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (818)
Q Consensus 489 --~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~ 566 (818)
.|. ......|.....=|-+..-++...|.. ...++...
T Consensus 130 ~~~g~------------~~~~~~ii~s~~~H~sv~ka~~~lg~~----------------------------v~~i~~d~ 169 (431)
T TIGR01788 130 EAAGK------------PTDKPNLVMGSNVQVCWEKFARYFDVE----------------------------LREVPMDP 169 (431)
T ss_pred HhcCC------------CCCCcEEEEcCcchHHHHHHHHHcCce----------------------------eEEEecCC
Confidence 110 111234555555555443333222110 00111100
Q ss_pred -hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003466 567 -WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (818)
Q Consensus 567 -~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~ 645 (818)
.+ .-| .+.|++.|.+ ++..|++--+ ..+.|.+.| +++
T Consensus 170 ~~~-----------~vd------------------~~~L~~~i~~--------~t~lV~~t~g-~t~tG~idp----i~~ 207 (431)
T TIGR01788 170 GRY-----------VID------------------PEQVVEAVDE--------NTIGVVCILG-TTYTGEYED----VKA 207 (431)
T ss_pred Cce-----------eeC------------------HHHHHHHHhh--------CCeEEEEEeC-CCCCcccCC----HHH
Confidence 00 001 2567777752 2345555554 778898888 999
Q ss_pred HHHHHHhc------CCcEEEeecccCccc---CCcc-chhcccCCCCcEEEec--ccccCCccccceeecchH--HHhhc
Q 003466 646 LVKECQNR------KIPVIFDEVFTGFWR---LGVE-TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA--VFDSF 711 (818)
Q Consensus 646 LreLc~~~------gilLI~DEV~TGfGR---tG~~-~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~--i~~~l 711 (818)
|.++|+++ |+.+.+|=+|.|+-. .++. +-+. -...|.++++ |-+.|- ...|+++.+++ +.+.+
T Consensus 208 I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~s~HK~~~~P-~g~G~l~~r~~~~l~~~~ 284 (431)
T TIGR01788 208 LNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINVSGHKYGLVY-PGVGWVIWRDEEALPEEL 284 (431)
T ss_pred HHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEECchhccCCC-CCcEEEEEeChHHcchhh
Confidence 99999999 999999999976421 2221 1111 1235666654 443232 34566666653 22221
Q ss_pred -------cCC--------hH----------------------------HHHHHHHHHHHcCCCeeEEE--eeeeEEEEEE
Q 003466 712 -------VGD--------SK----------------------------LWDLELIQQISSHRTVQRVV--ALGTLCAIEL 746 (818)
Q Consensus 712 -------~~~--------~~----------------------------~~~~~l~~~l~~~~~v~~vr--g~Gl~~~iel 746 (818)
... ++ .+.+.+.+.+++.+.+.-+- ....++.+.+
T Consensus 285 ~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~ 364 (431)
T TIGR01788 285 IFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKL 364 (431)
T ss_pred eecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEe
Confidence 100 00 01122445566666543221 1344555655
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEe----ec---C-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMR----PL---G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~----p~---g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.... . .......+.++|.++|+.+. |. | -.+|++....++.+.++.+++.|.+++.++
T Consensus 365 ~~~~-~---~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 365 KDDA-D---PGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CCCC-C---CCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 4321 0 01124568889999998642 21 2 356777766788999999999999988765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.3e-06 Score=94.69 Aligned_cols=162 Identities=13% Similarity=0.097 Sum_probs=99.3
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.+++++||+.|+..++.... ..| ..|++.+..|+|.
T Consensus 61 ~~~p~~~~Le~~lA~leg~---~~al~~~sG~~Ai~~al~~ll-----~~G----------------D~Vlv~~~~y~~t 116 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEGG---IGALAVSSGQAAITYSILNIA-----SAG----------------DEIVSSSSLYGGT 116 (431)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CCC----------------CEEEEccCchhhH
Confidence 3467788999999999873 688899999999999987541 122 2677777666553
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. ..+...- . ..| ...+.+| ..|
T Consensus 117 ~-~~~~~~~-~------------~~G-------------v~v~~vd--------------~~d----------------- 138 (431)
T PRK08248 117 Y-NLFAHTL-P------------KLG-------------ITVKFVD--------------PSD----------------- 138 (431)
T ss_pred H-HHHHHHH-H------------hCC-------------EEEEEEC--------------CCC-----------------
Confidence 2 2111000 0 000 0000001 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. +++.+|++|.. .+..|.+.+ +++|.++|+++|+++|+|+++. ++.. ..-..
T Consensus 139 -~e~l~~ai~--------~~tklV~l~sp-~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a----~~~~--~~pl~ 198 (431)
T PRK08248 139 -PENFEAAIT--------DKTKALFAETI-GNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA----SPYL--LRPIE 198 (431)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC----cccc--CChhH
Confidence 144555553 25678888875 677787775 7899999999999999999984 1211 11112
Q ss_pred CCCcEEE--ecccccCCccccceeec
Q 003466 680 CVPDIAC--YGKLLTGGVIPLAATLA 703 (818)
Q Consensus 680 v~PDivt--lgKgLggGy~PlsAvl~ 703 (818)
.-.|+++ +.|.++|.-..+|++++
T Consensus 199 ~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 199 HGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred cCCCEEEEcCccccCCCCCceEEEEE
Confidence 2367764 67999862134555444
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-05 Score=92.09 Aligned_cols=200 Identities=13% Similarity=0.030 Sum_probs=113.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch----hcc
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT----ADL 677 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a----~e~ 677 (818)
+.+++.|.. .+..+++.|.+|-.....|| .+.+...+++++++|++||+.||.|=++. || .+ +|- -.+
T Consensus 157 ~~Le~aI~~----~~~~~~~lV~~e~t~N~~GG-~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~g-NA-~~I~~re~g~ 228 (450)
T TIGR02618 157 KKLQKLIDE----VGADKIPYICLAVTVNLAGG-QPVSMANMREVRELCEAHGIKVFYDATRC-VE-NA-YFIKEREQGY 228 (450)
T ss_pred HHHHHHhcc----ccCcccCceEEEEecccCCC-eeCCHHHHHHHHHHHHHcCCEEEEEccch-hh-Ch-hhhhcccccc
Confidence 667777763 23345666666654244445 55688999999999999999999997773 21 00 110 001
Q ss_pred cCC-----------CCcEEEecccccCCccccceeec--chHHHhhccCC-----h-H----------------------
Q 003466 678 LGC-----------VPDIACYGKLLTGGVIPLAATLA--TNAVFDSFVGD-----S-K---------------------- 716 (818)
Q Consensus 678 ~gv-----------~PDivtlgKgLggGy~PlsAvl~--~~~i~~~l~~~-----~-~---------------------- 716 (818)
.+. -.|. |++|+.-.+..|+|.+++ ++++++..+.. + .
T Consensus 229 ~~~~i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~ 307 (450)
T TIGR02618 229 EDKSIAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVD 307 (450)
T ss_pred cCCCHHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhh
Confidence 122 2355 778888544478888887 56666533211 0 0
Q ss_pred --HH------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEe----------ec
Q 003466 717 --LW------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMR----------PL 777 (818)
Q Consensus 717 --~~------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~----------p~ 777 (818)
+. .+.|.+.|.+.+....-...|.++-++...--++.+....-+..++-.|+ +-||=.. |.
T Consensus 308 ~~y~~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~ 387 (450)
T TIGR02618 308 YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNV 387 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCC
Confidence 00 01233445554431111233455555554322233333333555666665 4455332 11
Q ss_pred --------CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHHH
Q 003466 778 --------GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 778 --------g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~~ 810 (818)
-..+|+..|- +.|.+++|.+.+++....+..+.
T Consensus 388 ~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 429 (450)
T TIGR02618 388 TGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDD 429 (450)
T ss_pred CCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhh
Confidence 1467887777 78999999999999988877553
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=95.31 Aligned_cols=202 Identities=10% Similarity=-0.012 Sum_probs=117.7
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccCCCC------CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhh
Q 003466 413 PDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (818)
Q Consensus 413 lGh~~hp~V~eAi~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t 486 (818)
.|.- ++.+.+|+.+.+........... ..+...++.++|+++++.+ .+.++|++++++|+..+++.. ....
T Consensus 7 ~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~~l-~~~~ 83 (353)
T TIGR03235 7 TTPI-DPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGAD-TEEVIFTSGATESNNLAILGL-ARAG 83 (353)
T ss_pred CCCC-CHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHH-HHhc
Confidence 4555 89999999988754211110000 1234667888899988743 357999999999999999865 2110
Q ss_pred hcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc
Q 003466 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (818)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~ 566 (818)
.. +++ +.|......|.+........... |. ....++.+.
T Consensus 84 ~~---------------~g~-~~vi~~~~~~~s~~~~~~~~~~~--------------G~-----------~v~~v~~~~ 122 (353)
T TIGR03235 84 EQ---------------KGK-KHIITSAIEHPAVLEPIRALERN--------------GF-----------TVTYLPVDE 122 (353)
T ss_pred cc---------------CCC-CeeeEcccccHHHHHHHHHHHhc--------------CC-----------EEEEEccCC
Confidence 01 111 34444555565443332211000 00 000111110
Q ss_pred hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHH
Q 003466 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (818)
Q Consensus 567 ~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~L 646 (818)
.. ..| .+.+++.+. ++..+|++..+ ++..|.+.+ +++|
T Consensus 123 ~~-----------~~d------------------~~~l~~~l~--------~~~~lv~~~~~-~n~tG~~~~----~~~I 160 (353)
T TIGR03235 123 SG-----------RID------------------VDELADAIR--------PDTLLVSIMHV-NNETGSIQP----IREI 160 (353)
T ss_pred CC-----------cCC------------------HHHHHHhCC--------CCCEEEEEEcc-cCCceeccC----HHHH
Confidence 00 011 145555553 24577878876 788898886 8999
Q ss_pred HHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHH
Q 003466 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (818)
Q Consensus 647 reLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i 707 (818)
.++|++||+++|+|++| ++|..- +-.+ ...+|+++++ |.+| -.-+|++.++++.
T Consensus 161 ~~l~~~~~~~~ivD~a~-~~g~~~--~~~~--~~~~D~~~~s~~K~~g--p~g~g~l~~~~~~ 216 (353)
T TIGR03235 161 AEVLEAHEAFFHVDAAQ-VVGKIT--VDLS--ADRIDLISCSGHKIYG--PKGIGALVIRKRG 216 (353)
T ss_pred HHHHHHcCCEEEEEchh-hcCCcc--cccc--ccCCCEEEeehhhcCC--CCceEEEEEccCc
Confidence 99999999999999999 454431 1112 2247999888 9643 1125777788764
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-06 Score=89.57 Aligned_cols=76 Identities=18% Similarity=0.067 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+.+.+.++.+.++ +|+|||++.. ........-+++.. -.+|+|+..+..+++++..+.+.+
T Consensus 115 ~~l~~~l~~l~~~-------------yD~ViiD~pp-----~~~~~~~~~~~~~~-D~vilV~~~~~~~~~~~~~~~~~l 175 (204)
T TIGR01007 115 SNFKTLIETLRKY-------------FDYIIIDTPP-----IGTVTDAAIIARAC-DASILVTDAGEIKKRDVQKAKEQL 175 (204)
T ss_pred HHHHHHHHHHHhc-------------CCEEEEeCCC-----ccccchHHHHHHhC-CeEEEEEECCCCCHHHHHHHHHHH
Confidence 4456666666544 9999999953 21111222344444 478899999999999999999999
Q ss_pred HhCCCcEEEEEEccC
Q 003466 275 KLRGYDVVAVVFEDH 289 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~ 289 (818)
+..+.++.|+|+|++
T Consensus 176 ~~~~~~~~gvVlN~~ 190 (204)
T TIGR01007 176 EQTGSNFLGVVLNKV 190 (204)
T ss_pred HhCCCCEEEEEEeCc
Confidence 999999999999997
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.8e-06 Score=92.30 Aligned_cols=171 Identities=11% Similarity=0.034 Sum_probs=102.0
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
...++....|+++|+.+-+. +..++++||.+|+..++...+ +.| ..||+.+..|.+
T Consensus 60 R~gnPt~~~Le~~la~le~~---~~~v~~sSG~aAi~~~l~all-----~~G----------------D~Vlv~~~~Y~~ 115 (395)
T PRK05967 60 TRGTPTTDALCKAIDALEGS---AGTILVPSGLAAVTVPFLGFL-----SPG----------------DHALIVDSVYYP 115 (395)
T ss_pred CCCChHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhc-----CCC----------------CEEEEccCCcHH
Confidence 34578888999999987653 456777789999999886541 223 268888888876
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.......+. ...|.. +.+-|. .+
T Consensus 116 ~~~l~~~~l--------------~~~Gi~------------------------------v~~vd~-------~~------ 138 (395)
T PRK05967 116 TRHFCDTML--------------KRLGVE------------------------------VEYYDP-------EI------ 138 (395)
T ss_pred HHHHHHHHH--------------HhcCeE------------------------------EEEeCC-------CC------
Confidence 431110000 000000 001110 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.+. +++.+|++|.. .+..+ ...-+++|.++|+++|+++|+|+++... ..+---.+
T Consensus 139 --~e~l~~al~--------~~TklV~lesP-sNP~l----~v~dl~~I~~la~~~g~~vvVD~t~a~p----~~~~pl~~ 199 (395)
T PRK05967 139 --GAGIAKLMR--------PNTKVVHTEAP-GSNTF----EMQDIPAIAEAAHRHGAIVMMDNTWATP----LYFRPLDF 199 (395)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCC----cHHHHHHHHHHHHHhCCEEEEECCccCc----eecChhHc
Confidence 134555554 34679999965 45444 4445999999999999999999998532 11111123
Q ss_pred CCCCcEE--EecccccC-CccccceeecchHHHhhc
Q 003466 679 GCVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSF 711 (818)
Q Consensus 679 gv~PDiv--tlgKgLgg-Gy~PlsAvl~~~~i~~~l 711 (818)
| .|++ ...|-++| |=.=.|+++.+++.++.+
T Consensus 200 G--aDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l 233 (395)
T PRK05967 200 G--VDISIHAATKYPSGHSDILLGTVSANEKCWPQL 233 (395)
T ss_pred C--CCEEEEecccccCCCCCeeEEEEEcCHHHHHHH
Confidence 4 5666 58899886 113345566677654433
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-05 Score=89.47 Aligned_cols=297 Identities=12% Similarity=0.034 Sum_probs=157.8
Q ss_pred ChhHHHHHHHHHhccCCCCC------CcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCC
Q 003466 442 YEPALECAELLLQGVGKGWA------SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l------~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~s 515 (818)
++...++-++|+++++-+.- ..-+|+++||+||..||.+|+.++....|. ...+.-+|.....
T Consensus 121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~-----------~~~~~~vv~~S~~ 189 (490)
T PLN02880 121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK-----------NALEKLVVYASDQ 189 (490)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcc-----------cccCCeEEEEcCC
Confidence 45666677777777753210 135788999999999999994333222221 0112234555555
Q ss_pred CCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchh
Q 003466 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (818)
Q Consensus 516 YHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~ 595 (818)
-|-+..-++.+.|.... .+..|+.... ..++. +
T Consensus 190 aH~Sv~Kaa~~lGlg~~-------------------------~v~~Vp~d~~-----------------~~~~m--d--- 222 (490)
T PLN02880 190 THSALQKACQIAGIHPE-------------------------NCRLLKTDSS-----------------TNYAL--A--- 222 (490)
T ss_pred chHHHHHHHHHcCCCHH-------------------------HEEEeecCCC-----------------cCCcC--C---
Confidence 68877666666543210 0111211100 00000 0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh
Q 003466 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (818)
Q Consensus 596 ~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~ 675 (818)
.+.|++.|++.. ..+....+||..-- ....|.+.| +++|.++|++||+.|.+|=++.|+-..-..+-.
T Consensus 223 -----~~~L~~~i~~~~--~~g~~p~~vvataG-TT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~ 290 (490)
T PLN02880 223 -----PELLSEAISTDL--SSGLIPFFLCATVG-TTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICPEYRH 290 (490)
T ss_pred -----HHHHHHHHHHHH--HCCCccEEEEEecC-CCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHH
Confidence 145555554210 11234445555443 455677777 999999999999999999888665332222222
Q ss_pred cccCC-CCcEEE--ecccccCCccccceeecchHH--Hh-------hccC-----------------ChH------H---
Q 003466 676 DLLGC-VPDIAC--YGKLLTGGVIPLAATLATNAV--FD-------SFVG-----------------DSK------L--- 717 (818)
Q Consensus 676 e~~gv-~PDivt--lgKgLggGy~PlsAvl~~~~i--~~-------~l~~-----------------~~~------~--- 717 (818)
..-|+ .+|-++ .=|-+... ++.|+++.++.- .+ ++.. .++ +
T Consensus 291 ~l~gie~aDSit~d~HKwl~~P-~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~ 369 (490)
T PLN02880 291 YIDGVEEADSFNMNAHKWFLTN-FDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMV 369 (490)
T ss_pred HhcCchhcCEEEECchhhcCCC-ccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHH
Confidence 23465 578664 56777666 477777776421 11 1110 000 1
Q ss_pred ------------------HHHHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceE-ee-
Q 003466 718 ------------------WDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RP- 776 (818)
Q Consensus 718 ------------------~~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv-~p- 776 (818)
+.+.+.+.+++.+.+.-+. ....++.+.+.+..............+.++|.+.|-+. ..
T Consensus 370 l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t 449 (490)
T PLN02880 370 LRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHT 449 (490)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEE
Confidence 1112334445555432221 12335556554321100001233456777777776544 33
Q ss_pred --cC-CEEEEECCCC-ChHHHHHHHHHHHHHHHHHHH
Q 003466 777 --LG-NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 777 --~g-~~ir~~ppl~-~t~edId~~~~~l~~~l~~l~ 809 (818)
.| ..+|+++... .|++||+.+++.|.+..+++.
T Consensus 450 ~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~ 486 (490)
T PLN02880 450 VLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLL 486 (490)
T ss_pred EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22 5778876554 456999999999998877764
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.7e-06 Score=92.28 Aligned_cols=208 Identities=15% Similarity=0.112 Sum_probs=127.9
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
...+|-...|+++|+++-+. +.+++++||..|+.+++...+ +.| ..||+....|++
T Consensus 58 R~~nPt~~~le~~la~LEg~---~~a~~~~SGmaAi~~~~~~ll-----~~G----------------D~Vv~~~~~Yg~ 113 (395)
T PRK08114 58 RRGTLTHFSLQEAMCELEGG---AGCALYPCGAAAVANAILAFV-----EQG----------------DHVLMTGTAYEP 113 (395)
T ss_pred CCCChhHHHHHHHHHHHhCC---CeEEEEhHHHHHHHHHHHHHc-----CCC----------------CEEEEeCCCcHH
Confidence 34578889999999997663 688888999999999887541 222 256666666655
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.. ..+.-. ....|..+ ..+. ..|
T Consensus 114 t~-~l~~~~-------------l~~~Gi~v-----------~~vd----------------~~d---------------- 136 (395)
T PRK08114 114 TQ-DFCSKI-------------LSKLGVTT-----------TWFD----------------PLI---------------- 136 (395)
T ss_pred HH-HHHHHH-------------HHhcCcEE-----------EEEC----------------CCC----------------
Confidence 32 221100 00001000 0000 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC--CcEEEeecccCcccCCccchhc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g--ilLI~DEV~TGfGRtG~~~a~e 676 (818)
.+.+++.|. .++..|++|.+ .+..|.+.+ +++|.++|+++| +++|+|.+++ +|.. ++
T Consensus 137 --~~~l~~~l~--------~~TrlV~~Etp-sNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a----~p~~--~~ 195 (395)
T PRK08114 137 --GADIAKLIQ--------PNTKVVFLESP-GSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA----AGVL--FK 195 (395)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc----cccc--cC
Confidence 144566664 35689999997 788888887 999999999985 9999999984 2322 33
Q ss_pred ccCCCCcEEE--ecccccCCc-cccceeecchHHHhhccCChH-----------------------HHH------HHHHH
Q 003466 677 LLGCVPDIAC--YGKLLTGGV-IPLAATLATNAVFDSFVGDSK-----------------------LWD------LELIQ 724 (818)
Q Consensus 677 ~~gv~PDivt--lgKgLggGy-~PlsAvl~~~~i~~~l~~~~~-----------------------~~~------~~l~~ 724 (818)
-...-.|+++ ..|.|+|.- .=.|+++.+++.++.+..... .++ ..+.+
T Consensus 196 pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~ 275 (395)
T PRK08114 196 ALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAE 275 (395)
T ss_pred HHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 3333478875 679888631 224456667766553321100 111 23455
Q ss_pred HHHcCCCeeEEE------------------eeeeEEEEEEec
Q 003466 725 QISSHRTVQRVV------------------ALGTLCAIELQA 748 (818)
Q Consensus 725 ~l~~~~~v~~vr------------------g~Gl~~~iel~~ 748 (818)
.|+.||.|..|. |.|.|+.|++..
T Consensus 276 ~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 276 WLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK 317 (395)
T ss_pred HHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence 678888876663 678899999963
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.7e-06 Score=91.41 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=98.2
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcE---EEeccccc-CCc
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLLT-GGV 695 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi---vtlgKgLg-gGy 695 (818)
+.+|++.-. ++-.|.+. +.+.+++|.+.|+ ++++|+||++.-|.. .. .........|.+ -+|||.+| .|
T Consensus 148 ~~li~i~nP-~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~~-~~-s~~~~~~~~~~~iv~~S~SK~~~l~G- 220 (354)
T PRK04635 148 AKLVFICNP-NNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFCP-EY-SVADLLASYPNLVVLRTLSKAFALAG- 220 (354)
T ss_pred CCEEEEeCC-CCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhcc-Cc-chHHHHhhCCCEEEEechHHHhhhhH-
Confidence 344444443 78888877 5566666666554 599999999977632 11 111111112333 38999987 66
Q ss_pred cccceeecchHHHhhccCCh------H--------HH------------------HHHHHHHHHcCCCeeEEEeeeeEEE
Q 003466 696 IPLAATLATNAVFDSFVGDS------K--------LW------------------DLELIQQISSHRTVQRVVALGTLCA 743 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~~~~------~--------~~------------------~~~l~~~l~~~~~v~~vrg~Gl~~~ 743 (818)
+-+|.+++++++++.+.... . .+ ++.+.+.|++++.+.-....|.++-
T Consensus 221 lRlG~~i~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~ 300 (354)
T PRK04635 221 ARCGFTLANEELIEILMRVIAPYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNGNYVL 300 (354)
T ss_pred HHHhhhhCCHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCcEEE
Confidence 57788999998887653210 0 00 0123344555553322233455444
Q ss_pred EEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 744 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 744 iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+.+. + +..+.+.|.++||.++.. ++.+|++. -+++|+++++++|++
T Consensus 301 ~~~~-~----------~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~---~~~e~~~~l~~al~~ 351 (354)
T PRK04635 301 AKFD-D----------VDAVFKALWDAGIVARAYKDPRLANCIRFSF---SNRAETDKLIGLIRN 351 (354)
T ss_pred EECC-C----------HHHHHHHHHHCCEEEEECCCCCCCCeEEEEe---CCHHHHHHHHHHHHH
Confidence 4442 1 345778899999999863 25788885 468999999988864
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.3e-06 Score=93.18 Aligned_cols=221 Identities=19% Similarity=0.185 Sum_probs=133.4
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
...++....|+++|+++-+. +.++.++||-.|+-+++.... +.| ..||..+..|+|
T Consensus 51 R~gnPt~~~le~~la~Le~g---~~a~~~~SGmaAi~~~l~~ll-----~~G----------------d~iv~~~~~Y~~ 106 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEGG---EDALLFSSGMAAISAALLALL-----KPG----------------DHIVASDDLYGG 106 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHHS------TT----------------BEEEEESSSSHH
T ss_pred ccccccHHHHHHHHHHhhcc---cceeeccchHHHHHHHHHhhc-----ccC----------------CceEecCCccCc
Confidence 45588899999999998773 688889999999988888652 222 368999999988
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.... +.- +....|+ .+.|-|. .+
T Consensus 107 t~~~-~~~-------------~l~~~gv------------------------------~v~~~d~-------~d------ 129 (386)
T PF01053_consen 107 TYRL-LEE-------------LLPRFGV------------------------------EVTFVDP-------TD------ 129 (386)
T ss_dssp HHHH-HHH-------------CHHHTTS------------------------------EEEEEST-------TS------
T ss_pred chhh-hhh-------------hhcccCc------------------------------EEEEeCc-------hh------
Confidence 3211 110 0000000 0112221 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC-CcEEEeecccCcccCCccchhcc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADL 677 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g-ilLI~DEV~TGfGRtG~~~a~e~ 677 (818)
.+.+++.++ .++.+|++|+. .+...-++. ++++.++|+++| +++|+|...... ..+.-
T Consensus 130 --~~~l~~~l~--------~~t~~v~~Esp-sNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~atp------~~~~p 188 (386)
T PF01053_consen 130 --LEALEAALR--------PNTKLVFLESP-SNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFATP------YNQNP 188 (386)
T ss_dssp --HHHHHHHHC--------TTEEEEEEESS-BTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT------TTC-G
T ss_pred --HHHHHhhcc--------ccceEEEEEcC-CCccccccc----HHHHHHHHHHhCCceEEeeccccce------eeecc
Confidence 256777775 38899999996 554433333 999999999999 999999987421 12222
Q ss_pred cCCCCcEEE--ecccccC-Cccccceeecc--hHHHhhccCChH-----------------------HHH------HHHH
Q 003466 678 LGCVPDIAC--YGKLLTG-GVIPLAATLAT--NAVFDSFVGDSK-----------------------LWD------LELI 723 (818)
Q Consensus 678 ~gv~PDivt--lgKgLgg-Gy~PlsAvl~~--~~i~~~l~~~~~-----------------------~~~------~~l~ 723 (818)
+..-.|+++ +.|-++| |=.=.|+++++ +++++.+..... .++ ..+.
T Consensus 189 L~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA 268 (386)
T PF01053_consen 189 LELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTLPLRMERQNENAEALA 268 (386)
T ss_dssp GGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 222368774 7798875 21234566654 466654432111 111 2355
Q ss_pred HHHHcCCCeeEEE------------------eeeeEEEEEEecCcccCCCchHHHHHHHHHHH
Q 003466 724 QQISSHRTVQRVV------------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR 768 (818)
Q Consensus 724 ~~l~~~~~v~~vr------------------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~ 768 (818)
+.|+.||.|..|. |.|.|++|++.... ..+..|.+.|.
T Consensus 269 ~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~-------~~~~~f~~~l~ 324 (386)
T PF01053_consen 269 EFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE-------EAARRFLDALK 324 (386)
T ss_dssp HHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH-------HHHHHHHHH-S
T ss_pred HHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccch-------hhhHhHHhhhh
Confidence 6678899998886 66679999998651 24566666653
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-06 Score=96.58 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=105.8
Q ss_pred HHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCcc
Q 003466 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (818)
Q Consensus 422 ~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~ 501 (818)
.+++.+++...... ..+...+|+++|+++++. +.+++++||++|+..|++.+.+.+..+.+.
T Consensus 47 ~~a~~~~~~~~~~~-----~G~~~~~fe~~lA~~~g~---~~~v~~~sGt~al~~aL~al~~~~~~~~~~---------- 108 (438)
T PRK15407 47 LQNLVDASLDFWLT-----TGRFNDAFEKKLAEFLGV---RYALLVNSGSSANLLAFSALTSPKLGDRAL---------- 108 (438)
T ss_pred HHHHHHHHHhCccc-----CChhHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHhhccccccCC----------
Confidence 45555555542221 134577899999999873 689999999999999999762222111110
Q ss_pred ccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC-cchhhhhccccccccc
Q 003466 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITF 580 (818)
Q Consensus 502 ~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~~~~~ 580 (818)
.....||+...+|.+... ++...|... ..+.+ |. ++
T Consensus 109 --~pGd~VIv~~~t~~a~~~-~v~~~G~~p----------------------------v~vdvd~~------------~~ 145 (438)
T PRK15407 109 --KPGDEVITVAAGFPTTVN-PIIQNGLVP----------------------------VFVDVELP------------TY 145 (438)
T ss_pred --CCCCEEEECCCCcHHHHH-HHHHcCCEE----------------------------EEEecCCC------------cC
Confidence 112468888877765432 222211110 00000 00 01
Q ss_pred cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEe
Q 003466 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (818)
Q Consensus 581 nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~D 660 (818)
+ + | .+.+++.+. .++.+|++.+. .| .+..+++|+++|++||+++|.|
T Consensus 146 ~-i--------d--------~~~le~~i~--------~~tkaVi~~~~-~G-------~p~dl~~I~~la~~~gi~vIeD 192 (438)
T PRK15407 146 N-I--------D--------ASLLEAAVS--------PKTKAIMIAHT-LG-------NPFDLAAVKAFCDKHNLWLIED 192 (438)
T ss_pred C-c--------C--------HHHHHHHcC--------cCCeEEEEeCC-CC-------ChhhHHHHHHHHHHCCCEEEEE
Confidence 1 0 0 145555553 35678888875 33 2346899999999999999999
Q ss_pred ecccCcccCCccchhcccCCCCcEEEec----ccccCCccccceeecchH
Q 003466 661 EVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNA 706 (818)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~~~ 706 (818)
++|+ +|-+ +.-...|-..|+.+|| |.++.| ..|+++++++
T Consensus 193 aa~a-~G~~---~~g~~~G~~gd~~~fSf~~~k~~~~g--eGG~l~t~d~ 236 (438)
T PRK15407 193 NCDA-LGST---YDGRMTGTFGDIATLSFYPAHHITMG--EGGAVFTNDP 236 (438)
T ss_pred Cccc-hhhh---cCCeeeeccCceEEEeCCCCCCcccc--CceEEEECCH
Confidence 9994 4322 1111223334777776 556654 3466777543
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9e-05 Score=81.36 Aligned_cols=185 Identities=18% Similarity=0.225 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC-ccchhcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG-~~~a~e~~gv 680 (818)
+.||+.+.+ +....-|++.| ++-+|-+. ..+.|++|.+||.+||+.+|.||||.-+=-.| +.+.+. .+
T Consensus 148 ~~LE~~~~~------~~vkl~iLCnP--HNP~Grvw-t~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a--~l 216 (388)
T COG1168 148 DALEKAFVD------ERVKLFILCNP--HNPTGRVW-TKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA--SL 216 (388)
T ss_pred HHHHHHHhc------CCccEEEEeCC--CCCCCccc-cHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchh--hc
Confidence 678888863 22245777778 67777554 99999999999999999999999999774445 333322 23
Q ss_pred CCc-----EEEe--ccccc-CCccccceeecc-hHHHhhccCC----h----H---------------HHHHHHHH----
Q 003466 681 VPD-----IACY--GKLLT-GGVIPLAATLAT-NAVFDSFVGD----S----K---------------LWDLELIQ---- 724 (818)
Q Consensus 681 ~PD-----ivtl--gKgLg-gGy~PlsAvl~~-~~i~~~l~~~----~----~---------------~~~~~l~~---- 724 (818)
.|+ |.|+ ||+.. .| +-.|.++.+ +++.+.+... . . .|-+++++
T Consensus 217 s~~~a~~~it~~saSKtFNlaG-L~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~ 295 (388)
T COG1168 217 SERFADNSITLTSASKTFNLAG-LKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKD 295 (388)
T ss_pred ChhhhcceEEEeeccccccchh-hhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 333 3343 58765 45 566666654 4442322110 0 0 12222222
Q ss_pred -------HH-HcCCCeeEEEeeeeEEEE-EEecCcccCCCchHHHHHHHHHHHhC-CceEee------cC-CEEEEECCC
Q 003466 725 -------QI-SSHRTVQRVVALGTLCAI-ELQAAGCNAGYGSLYAASLLKKLRED-GVYMRP------LG-NVIYLMCGP 787 (818)
Q Consensus 725 -------~l-~~~~~v~~vrg~Gl~~~i-el~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p------~g-~~ir~~ppl 787 (818)
.+ +..|.+.-..-.|..+.. ++..- ..+ ...+.+.|+++ +|.+.+ .| +-+|+. +
T Consensus 296 N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l----~l~---d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN--~ 366 (388)
T COG1168 296 NRDYVADFLNKHLPGVKVTEPQGTYLAWLDCREL----GLD---DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLN--F 366 (388)
T ss_pred HHHHHHHHHHhhCCCcEEecCCCceeeeeecccc----CCC---hHHHHHHHHHhhcEeccCCCccCcCCCceEEEe--c
Confidence 22 234777666677776654 33221 111 12345555533 455543 34 444443 3
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 003466 788 CSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 788 ~~t~edId~~~~~l~~~l~~ 807 (818)
..+.+-+++++++|.++++.
T Consensus 367 acpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 367 ACPRAILEEALERLKRALKK 386 (388)
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 46678888888888887764
|
|
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.6e-06 Score=91.04 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=65.3
Q ss_pred CCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--------
Q 003466 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-------- 292 (818)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~-------- 292 (818)
||+|||.+..|+... ........ -.+|+|+.....++.++...++.++..+....++|+|++...
T Consensus 127 yD~VIiDtpp~~~~~------~~~~l~~a-D~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~ 199 (281)
T CHL00175 127 YDYILIDCPAGIDVG------FINAIAPA-QEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMM 199 (281)
T ss_pred CCEEEEeCCCCCCHH------HHHHHHhc-CeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccc
Confidence 999999998765322 22222232 358889999999999999999999988877789999998321
Q ss_pred CHHHHHHhhcCCCCEEe-cCCCCCCC
Q 003466 293 NEVPLMSYLRNRVPVLV-LPPLPQDS 317 (818)
Q Consensus 293 ~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (818)
..+.+++.+ +.|+++ ||+.+.+.
T Consensus 200 ~~~~l~~~~--~~~~~~~Ip~d~~v~ 223 (281)
T CHL00175 200 SVRDVQEML--GIPLLGAIPEDENVI 223 (281)
T ss_pred cHHHHHHHh--CCCeEEEccCCHhHH
Confidence 234566777 899999 99877643
|
|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-05 Score=79.12 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhh-hCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYR-PFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------ 292 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~-~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~------ 292 (818)
.||+|||-+..++. .....++. ..---+|+|+....-++..+...++.+++.+.++.|+|+|++...
T Consensus 67 ~yD~VIiD~pp~~~------~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 67 ELDYLVIDMPPGTG------DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCEEEEeCCCCCc------HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCC
Confidence 49999999977532 11223332 233557888888888999999999999999999999999997210
Q ss_pred -----CHHHHHHhhcC-CCCEEe-cCCCC
Q 003466 293 -----NEVPLMSYLRN-RVPVLV-LPPLP 314 (818)
Q Consensus 293 -----~~~~l~~~~~~-~~pvlg-iP~~~ 314 (818)
....+++..+. +.|++| ||+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred cccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 11123333322 899999 99864
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.8e-05 Score=85.35 Aligned_cols=152 Identities=18% Similarity=0.284 Sum_probs=91.1
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccc
Q 003466 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (818)
Q Consensus 622 AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~P 697 (818)
.++.-| +.-.|.+.+ .++|.++|+ +++++|+||++..|.. .... ......+.++ +|||.+| .| +-
T Consensus 144 v~~~~P--~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~-~~~~--~~~~~~~~vi~l~S~SK~~~l~G-lR 212 (337)
T PRK03967 144 VFICSP--NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSG-KSLI--GLIDEYPNLILLRTFSKAFGLAG-IR 212 (337)
T ss_pred EEEeCC--CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcc-cchH--HHHhhCCCEEEEecchHhhcchh-hh
Confidence 445566 677787775 467777774 7999999999987731 1111 1111123433 7999998 78 79
Q ss_pred cceeecchHHHhhccCChH--------------HHH------H----------HHHHHHHcCCCeeEEEeeeeEEEEEEe
Q 003466 698 LAATLATNAVFDSFVGDSK--------------LWD------L----------ELIQQISSHRTVQRVVALGTLCAIELQ 747 (818)
Q Consensus 698 lsAvl~~~~i~~~l~~~~~--------------~~~------~----------~l~~~l~~~~~v~~vrg~Gl~~~iel~ 747 (818)
+|.+++++++++.+..... .+. + .+.+.+.++. ....|.++-+.+
T Consensus 213 iG~iv~~~~~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~~~~~~~~- 287 (337)
T PRK03967 213 AGYAIANEEIIDALYRIKPPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEYA----YPSDANFLLLKL- 287 (337)
T ss_pred heeeecCHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccCc----CCCCCcEEEEhH-
Confidence 9999999988876543210 110 0 0111122110 112233222211
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEeecC----CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRPLG----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g----~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.+.+.|.++||++++.+ +.+|+... +.++.++++++|++.++
T Consensus 288 --------------~~~~~l~~~gi~v~~~~~~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 288 --------------DAYDYLLENGIVVRKLSGRLEGHIRVTVG---KREENDEFIKALKEIKE 333 (337)
T ss_pred --------------HHHHHHHHCCEEEEeCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence 26788899999998632 56888754 46777888888876654
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.3e-06 Score=85.10 Aligned_cols=270 Identities=17% Similarity=0.140 Sum_probs=163.9
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (818)
.+|...+-+.|++++| .+.+.+++..-||-.+++... .++.+.++.|+..|-+|+
T Consensus 60 kPpI~~F~~dlaeFlg---~D~~R~t~GARe~KfavMhal----------------------~~~gd~vV~D~~aHYtty 114 (382)
T COG1103 60 KPPIKDFLEDLAEFLG---MDEVRVTAGAREAKFAVMHAL----------------------CKEGDWVVVDSLAHYTTY 114 (382)
T ss_pred CCcHHHHHHHHHHHhC---CceeeecccchhhHHHHHHHh----------------------ccCCCEEEEcCcchHHHH
Confidence 5677888888999998 589999999889888777754 334578999999999887
Q ss_pred ccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHH
Q 003466 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (818)
Q Consensus 522 ~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~ 601 (818)
-|.-..|...+- .|.. ..|+. .. ....|.
T Consensus 115 vAAEragl~v~e----------------Vp~t---------g~Pey--------------------~i------~~e~y~ 143 (382)
T COG1103 115 VAAERAGLNVAE----------------VPNT---------GYPEY--------------------KI------TPEGYA 143 (382)
T ss_pred HHHHhcCCeEEe----------------cCCC---------CCCce--------------------Ee------cHHHHH
Confidence 766555432111 1110 01111 00 012345
Q ss_pred HHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iA-AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
+.+++..+ ++++.++ |+++-| .+.-|.... -+++.++|+++|++|++.-+.| .||.- . ..-.+
T Consensus 144 ~viee~~~-----~~g~~~~lallTh~--Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp---v-s~ke~ 207 (382)
T COG1103 144 EVIEEVKD-----EGGDPPALALLTHV--DGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP---V-SGKEI 207 (382)
T ss_pred HHHHHHHh-----ccCCCceEEEEecc--CCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc---c-ccccc
Confidence 66776665 3445566 555555 577787665 7899999999999999998886 45542 2 22346
Q ss_pred CCcEEEec--ccccCCccccceeecchHHHhhccCCh-H----------------------------------HHHHHH-
Q 003466 681 VPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS-K----------------------------------LWDLEL- 722 (818)
Q Consensus 681 ~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~~~-~----------------------------------~~~~~l- 722 (818)
.+|+++=| |+++.. -|+|...++++..+.....+ + .|.++.
T Consensus 208 g~DFiVgSGHKsmAAs-~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~ 286 (382)
T COG1103 208 GADFIVGSGHKSMAAS-APIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVE 286 (382)
T ss_pred CCCEEEecCccchhcc-CCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHH
Confidence 78988765 788765 49999999999887653332 1 222221
Q ss_pred -----HHHHHcCCCeeEEEeeee------EEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEE-CCCCCh
Q 003466 723 -----IQQISSHRTVQRVVALGT------LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM-CGPCSS 790 (818)
Q Consensus 723 -----~~~l~~~~~v~~vrg~Gl------~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~-ppl~~t 790 (818)
.+.+++.+. +...|- ++-++-..-..-.........-+.+.|.++||+-...|.+-.|. .-.-.+
T Consensus 287 kaR~fv~elEkigg---~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~Tk~~K~svyGl~ 363 (382)
T COG1103 287 KARWFVAELEKIGG---VKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPGQTKYFKLSVYGLS 363 (382)
T ss_pred HHHHHHHHHHHhhh---HHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCccccccCceeEEEEEeecCC
Confidence 222333322 211221 11122110000000000112235678888888765545333333 335789
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003466 791 PEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 791 ~edId~~~~~l~~~l~~ 807 (818)
.|+++..++++++.+++
T Consensus 364 ~Eqve~V~~afkeI~ek 380 (382)
T COG1103 364 WEQVEYVVDAFKEIAEK 380 (382)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988765
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00011 Score=82.98 Aligned_cols=179 Identities=9% Similarity=-0.022 Sum_probs=105.4
Q ss_pred ChhHHHHHHHHHhccCCCCCCcE--EEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 442 YEPALECAELLLQGVGKGWASRA--YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v--~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
.+...+.-+.++++++.+ -+.+ +|+++|||||..|+..+ |.+.. ..+|.....-|-+
T Consensus 65 ~~~e~~v~~~ia~llg~~-~~~~~G~fTsGGTEaNl~al~~a-r~~~~-------------------~~~vi~s~~~H~S 123 (374)
T PLN03032 65 RQFEVGVLDWFARLWELE-KDEYWGYITTCGTEGNLHGILVG-REVFP-------------------DGILYASRESHYS 123 (374)
T ss_pred HHHHHHHHHHHHHHhCCC-CccCCEEEeCchHHHHHHHHHHH-HHhCC-------------------CcEEEeCCCceeH
Confidence 455666677777777643 1334 89999999999999998 53311 1356677777776
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
..-++...+... ..++..... .-|
T Consensus 124 v~kaa~~lg~~~----------------------------~~V~~d~~g-----------~id----------------- 147 (374)
T PLN03032 124 VFKAARMYRMEA----------------------------VKVPTLPSG-----------EID----------------- 147 (374)
T ss_pred HHHHHHHcCCCC----------------------------eEeeeCCCC-----------cCc-----------------
Confidence 655544433210 011110000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC-----cEEEeecccCcccCCccch
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWRLGVETT 674 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi-----lLI~DEV~TGfGRtG~~~a 674 (818)
.+.|++.|.+ ...+..+|++--. ..+.|.+.| +++|.++|++||+ .|.+|=++.|+ .. .+..
T Consensus 148 -~~~L~~~i~~-----~~~~~~lvv~tag-tt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~-p~~~ 214 (374)
T PLN03032 148 -YDDLERALAK-----NRDKPAILNVNIG-TTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MM-PFVS 214 (374)
T ss_pred -HHHHHHHHHH-----cCCCCEEEEEEec-CcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hh-hccC
Confidence 2567777763 1224455555433 566788877 9999999999975 79999998653 21 1100
Q ss_pred -hc--ccCCCCcEEEec--ccccCCccccceeecchHHHhhc
Q 003466 675 -AD--LLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 675 -~e--~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l 711 (818)
.. .+....|.++++ |-++.- .+.|+++.+++..+.+
T Consensus 215 ~~~~~~~~~~vDSis~s~HK~~g~P-~g~G~ll~r~~~~~~~ 255 (374)
T PLN03032 215 RAPEVTFRKPIGSVSVSGHKFLGCP-MPCGVALTRKKHVKAL 255 (374)
T ss_pred CCcccCCCcCCcEEEECcccccCCC-cCeEEEEEEchhhHhh
Confidence 00 011236777665 544434 5778888888776544
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00017 Score=81.62 Aligned_cols=256 Identities=9% Similarity=0.054 Sum_probs=147.1
Q ss_pred ChhHHHHHHHHHhccCCCCCC-cEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 442 YEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~-~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.+...+.-+.++++++.+.-+ ..+|+++|+|||..|+..+ |.+.. ...|.....-|.+.
T Consensus 64 ~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~a-r~~~~-------------------~~~ii~s~~~H~Sv 123 (380)
T PRK02769 64 FDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLA-RELFP-------------------DGTLYYSKDTHYSV 123 (380)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHH-HHhCC-------------------CcEEEeCCCceehH
Confidence 455566777778877643112 2588999999999999988 43311 13455556667665
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC-cchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
.-++..-+.... .++. |+ . --|
T Consensus 124 ~ka~~~lg~~~~----------------------------~V~~~~~-g-----------~id----------------- 146 (380)
T PRK02769 124 SKIARLLRIKSR----------------------------VITSLPN-G-----------EID----------------- 146 (380)
T ss_pred HHHHHHcCCCCc----------------------------eeccCCC-C-----------cCc-----------------
Confidence 544433322100 0110 00 0 001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC---CcEEEeecccCcccCCc-----
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK---IPVIFDEVFTGFWRLGV----- 671 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g---ilLI~DEV~TGfGRtG~----- 671 (818)
.+.|++.|.+ ...++.+|++--+ ...-|.+.| +++|.++|++|| +.+++|=+|.|+ ..-.
T Consensus 147 -~~~L~~~i~~-----~~~~t~lvv~t~g-tt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~-~~p~~~~~~ 214 (380)
T PRK02769 147 -YDDLISKIKE-----NKNQPPIIFANIG-TTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGM-ILPFVNNPP 214 (380)
T ss_pred -HHHHHHHHHh-----CCCCcEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccce-eecccCccc
Confidence 2567777763 2334556666654 677888887 999999999998 699999999664 2210
Q ss_pred cchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccC-------------ChH-------H------------
Q 003466 672 ETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG-------------DSK-------L------------ 717 (818)
Q Consensus 672 ~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~-------------~~~-------~------------ 717 (818)
.+.+.. ..|.++++ |-+++- .+.|+++.+++..+.+.. +++ +
T Consensus 215 ~~d~~~---~vDsis~s~HK~~~~P-~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~ 290 (380)
T PRK02769 215 PFSFAD---GIDSIAISGHKFIGSP-MPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGL 290 (380)
T ss_pred cCCccC---CCCEEEECCcccCCCC-CCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHH
Confidence 111111 46888765 655544 588889998877654411 011 0
Q ss_pred ---------HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCC
Q 003466 718 ---------WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPC 788 (818)
Q Consensus 718 ---------~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~ 788 (818)
+.+.+.+.+++.+ +.-+. .-....+-|..+. ..+. +|..+.+.++.+++.....
T Consensus 291 ~~~~~~~~~la~~l~~~L~~~g-~~~~~-~p~~~~v~f~~~~----------~~~~-----~~w~l~~~~~~~hi~~~~~ 353 (380)
T PRK02769 291 RQRVQHCLDMAQYAVDRLQANG-IPAWR-NPNSITVVFPCPS----------ERIW-----KKWHLATSGNQAHIITMPH 353 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CEEEc-CCCceEEEEcCCC----------HHHH-----hCeeEcccCCEEEEEECCC
Confidence 0112334444332 21111 1112222333221 1121 6777777677788888888
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 003466 789 SSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 789 ~t~edId~~~~~l~~~l~~ 807 (818)
+|.+.||.+++-|...+..
T Consensus 354 ~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 354 HNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999988877653
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.5e-06 Score=91.70 Aligned_cols=196 Identities=16% Similarity=0.145 Sum_probs=112.6
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
||++.+|+.+.. .++-. -+..+...+|++++++++|. +.++|+.||+.||..|++...+ ++
T Consensus 8 ~~~m~~a~~~a~--~gd~~--Yg~D~~~~~l~~~i~~l~g~---e~a~f~~sGT~An~~al~~~~~-----~~------- 68 (290)
T PF01212_consen 8 TPAMLEAMAAAN--VGDDA--YGEDPTTARLEERIAELFGK---EAALFVPSGTMANQLALRAHLR-----PG------- 68 (290)
T ss_dssp -HHEEHHHHHTT--SB-CC--TTSSHHHHHHHHHHHHHHTS---SEEEEESSHHHHHHHHHHHHHH-----TT-------
T ss_pred CHHHHHHHHccc--cCCcc--cCCChhHHHHHHHHHHHcCC---CEEEEeCCCChHHHHHHHHHHh-----cC-------
Confidence 899999995443 22222 13467889999999999984 6888999999999999998731 11
Q ss_pred CCccccccceEEEEEcCC-CCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 498 KDTTEKCIELKVLALKGS-YHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~s-YHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
..||+-+.+ +|....++. .++|.. .+++|.....
T Consensus 69 ---------~~vi~~~~aHi~~~E~ga~~~~~G~~------------------------------~~~l~~~~~G----- 104 (290)
T PF01212_consen 69 ---------ESVICADTAHIHFDETGAIEELSGAK------------------------------LIPLPSDDDG----- 104 (290)
T ss_dssp ---------EEEEEETTEHHHHSSTTHHHHHTTCE------------------------------EEEEBECTGT-----
T ss_pred ---------CceeccccceeeeeccchhhHhcCcE------------------------------EEECCCcccC-----
Confidence 234444332 333333333 223221 1122211000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
.-| .+.|++.+.... .+..++++|.+|-- ....|-.+++.+.+++|+++|++||+
T Consensus 105 ----~l~------------------~~~l~~~~~~~~--~h~~~~~~v~le~t-~~~~GG~~~s~~el~ai~~~a~~~gl 159 (290)
T PF01212_consen 105 ----KLT------------------PEDLEAAIEEHG--AHHPQPAVVSLENT-TELAGGTVYSLEELRAISELAREHGL 159 (290)
T ss_dssp ----BB-------------------HHHHHHHHHHHT--GTSGGEEEEEEESS-BTTTTSB---HHHHHHHHHHHHHHT-
T ss_pred ----CCC------------------HHHHHHHhhhcc--ccCCCccEEEEEec-CcCCCCeeCCHHHHHHHHHHHHhCce
Confidence 001 256677776421 13468999999975 55555556689999999999999999
Q ss_pred cEEEeecccCcccCCccc-----hhcccCCCCcEE--EecccccCCccccce-eecchHHHh
Q 003466 656 PVIFDEVFTGFWRLGVET-----TADLLGCVPDIA--CYGKLLTGGVIPLAA-TLATNAVFD 709 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~-----a~e~~gv~PDiv--tlgKgLggGy~PlsA-vl~~~~i~~ 709 (818)
.|++| |- |...-- ....+----|++ ++.|+++. |.++ ++++++.++
T Consensus 160 ~lhmD----GA-Rl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~---~~Gavl~~~~~~i~ 213 (290)
T PF01212_consen 160 PLHMD----GA-RLANAAAALGVSLAEIAAGADSVSFGGTKNGGA---PGGAVLAGNKEFIA 213 (290)
T ss_dssp EEEEE----ET-THHHHHCHHHHHHHHHHTTSSEEEEETTSTT-S---SSEEEEEESHHHHH
T ss_pred EEEEe----hh-hHHHhhhcccccHHHHhhhCCEEEEEEEccccc---ccceEEEechHHHH
Confidence 99999 43 432210 011111235776 55565543 4555 456777554
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.7e-06 Score=87.33 Aligned_cols=102 Identities=11% Similarity=0.173 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003466 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (818)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (818)
..+.+.+.++.+.+. +|+|||.+.+|+..+. .......+ -||+|+.....++.++...++
T Consensus 97 ~~~~l~~~l~~l~~~-------------~D~viiD~p~~~~~~~------~~~l~~aD-~viiv~~~~~~s~~~~~~~~~ 156 (261)
T TIGR01968 97 TPEQMKKLVNELKEE-------------FDYVIIDCPAGIESGF------RNAVAPAD-EAIVVTTPEVSAVRDADRVIG 156 (261)
T ss_pred CHHHHHHHHHHHHHh-------------CCEEEEeCCCCcCHHH------HHHHHhCC-eEEEEcCCCcHHHHHHHHHHH
Confidence 445566666666554 9999999988765432 12222222 388899999999999999999
Q ss_pred HHHhCCCcEEEEEEccCCC--------CCHHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 273 SLKLRGYDVVAVVFEDHGL--------VNEVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 273 ~l~~~~~~v~gvi~N~~~~--------~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
.++..+....++|+|++.. ...+.+++.+ +.|+++ ||+....
T Consensus 157 ~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~~ 207 (261)
T TIGR01968 157 LLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEIL--SIPLIGVIPEDEAI 207 (261)
T ss_pred HHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHh--CCceeEEccCCHHH
Confidence 9987776678999999732 1234556666 899999 9987654
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00014 Score=83.06 Aligned_cols=200 Identities=14% Similarity=0.036 Sum_probs=108.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcc-------cCCccch
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW-------RLGVETT 674 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfG-------RtG~~~a 674 (818)
+.+++.|.. .+..+++.+.+|=.+...|| .+.|...+++++++|++||+.||.|=++. +| |-..+..
T Consensus 164 d~Le~~I~~----~~~~~~~lV~a~itvn~~GG-qpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~ 237 (460)
T PRK13237 164 DKLQALIDE----VGAENIAYICLAVTVNLAGG-QPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQD 237 (460)
T ss_pred HHHHHHhcc----ccCCccCceEEEEecccCCC-eeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCC
Confidence 667777763 23455555555533244445 55578899999999999999999998874 33 1111111
Q ss_pred hc------ccCCCCcEEEec--ccccCCcccc-ceeecc-hHHHhhccCC--------------hH--------------
Q 003466 675 AD------LLGCVPDIACYG--KLLTGGVIPL-AATLAT-NAVFDSFVGD--------------SK-------------- 716 (818)
Q Consensus 675 ~e------~~gv~PDivtlg--KgLggGy~Pl-sAvl~~-~~i~~~l~~~--------------~~-------------- 716 (818)
.. ..+--.|++||| |.++. |+ |+++++ +++++.++.. ++
T Consensus 238 ~~i~ei~~e~~s~aD~~t~S~~K~~~~---~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~ 314 (460)
T PRK13237 238 KSIKEIVHEMFSYADGCTMSGKKDCLV---NIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQ 314 (460)
T ss_pred CcHhHHhhhccCcCcEEEEeCCCCCCC---CCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhch
Confidence 00 011236887766 54443 33 445553 5555433211 01
Q ss_pred --HHH------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEe----------ec
Q 003466 717 --LWD------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMR----------PL 777 (818)
Q Consensus 717 --~~~------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~----------p~ 777 (818)
++. +.+.+.|.+.+....-...|.-+-++...-.++.+....-+..++..|+ +-||=.. |.
T Consensus 315 ~~y~~~ri~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~ 394 (460)
T PRK13237 315 YEYIEHRVGQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPK 394 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCC
Confidence 111 1234455555442111233444444433322233332233555666665 4454332 11
Q ss_pred --------CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHHH
Q 003466 778 --------GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 778 --------g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~~ 810 (818)
-..+|+..|- +.|.+++|.+.+++....+..+.
T Consensus 395 ~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 436 (460)
T PRK13237 395 TGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRED 436 (460)
T ss_pred CCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhh
Confidence 1467887777 78999999999999988876553
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00026 Score=83.35 Aligned_cols=184 Identities=11% Similarity=0.029 Sum_probs=103.4
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEEE--ecccccCCcc
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIAC--YGKLLTGGVI 696 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt--lgKgLggGy~ 696 (818)
..+|+.--- ....|.+-| +++|.++|++||+.|.+|=++.|+...-..+..-..|+ ..|=++ .=|-|.-. +
T Consensus 288 P~~VvaTaG-TT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p-~ 361 (539)
T PLN02590 288 PFFICATVG-TTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFAN-Q 361 (539)
T ss_pred cEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcC-c
Confidence 344444432 455677776 99999999999999999988877643332222222365 467554 45777666 5
Q ss_pred ccceeecchH--HH-------hhccCC-----------------hH---------------------------HHHHHHH
Q 003466 697 PLAATLATNA--VF-------DSFVGD-----------------SK---------------------------LWDLELI 723 (818)
Q Consensus 697 PlsAvl~~~~--i~-------~~l~~~-----------------~~---------------------------~~~~~l~ 723 (818)
+.|++++++. +. +++... ++ .+.+.+.
T Consensus 362 ~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~ 441 (539)
T PLN02590 362 TCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFE 441 (539)
T ss_pred CEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788887753 11 122110 00 0112234
Q ss_pred HHHHcCCCeeEEEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe-e---cC-CEEEEEC-CCCChHHHHHH
Q 003466 724 QQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-P---LG-NVIYLMC-GPCSSPEVCSQ 796 (818)
Q Consensus 724 ~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~-p---~g-~~ir~~p-pl~~t~edId~ 796 (818)
+.+++.+.+.-+.. .-.++.+.+.+..............+.+++.+.|.+.. + .| ..||++. ....|++||+.
T Consensus 442 ~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~ 521 (539)
T PLN02590 442 DYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTE 521 (539)
T ss_pred HHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHH
Confidence 44555554332221 12233344432210000012345678888888886554 3 22 4667654 33467899999
Q ss_pred HHHHHHHHHHHHH
Q 003466 797 LLLKLYQRLEEFD 809 (818)
Q Consensus 797 ~~~~l~~~l~~l~ 809 (818)
+++.|.+...++.
T Consensus 522 ~~~~i~~~a~~~~ 534 (539)
T PLN02590 522 AWQIIQKHASKFT 534 (539)
T ss_pred HHHHHHHHHHHhc
Confidence 9999988766553
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-05 Score=89.32 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=93.3
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
...++...+++++|+++.+. +.++.++||++|+.+|+.... ..| ..||+....|+|
T Consensus 65 r~~~pt~~~le~~la~l~g~---~~~v~fsSG~~Ai~~al~~ll-----~~G----------------d~VI~~~~~y~~ 120 (437)
T PRK05613 65 RLTNPTVEALENRIASLEGG---VHAVAFASGQAAETAAILNLA-----GAG----------------DHIVTSPRLYGG 120 (437)
T ss_pred CccChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHhc-----CCC----------------CEEEECCCccHH
Confidence 34578889999999998873 578888899999998886541 222 257777776665
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
........- ...|.. +..+..| +|
T Consensus 121 t~~~~~~~l--------------~~~Gi~-----------v~~vd~~---------------~d---------------- 144 (437)
T PRK05613 121 TETLFLVTL--------------NRLGIE-----------VTFVENP---------------DD---------------- 144 (437)
T ss_pred HHHHHHHHH--------------HhcCeE-----------EEEECCC---------------CC----------------
Confidence 311100000 000000 0000000 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.|. .++.+|++|.. .+..|.+.+ +++|.++|+++|+++|+|.++. .|.. .--..+
T Consensus 145 --~e~l~~~l~--------~~tk~V~~e~~-~Np~~~v~d----i~~I~~la~~~gi~livD~t~a-~g~~---~~p~~~ 205 (437)
T PRK05613 145 --PESWQAAVQ--------PNTKAFFGETF-ANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA-TAAL---VRPLEL 205 (437)
T ss_pred --HHHHHHhCC--------ccCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCeEEEECCCc-cccc---cChHHh
Confidence 145666664 24668888875 555566665 9999999999999999999983 3222 111234
Q ss_pred CCCCcEEE--ecccccC
Q 003466 679 GCVPDIAC--YGKLLTG 693 (818)
Q Consensus 679 gv~PDivt--lgKgLgg 693 (818)
| .|+++ +-|-++|
T Consensus 206 G--aDivv~S~~K~l~G 220 (437)
T PRK05613 206 G--ADVVVASLTKFYTG 220 (437)
T ss_pred C--CCEEEeeccceecC
Confidence 5 48875 5687775
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00021 Score=78.26 Aligned_cols=298 Identities=14% Similarity=0.096 Sum_probs=164.0
Q ss_pred CHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhccccccc
Q 003466 418 QIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~ 494 (818)
.++..+|+.+++..... +....+.-....+.||.|.+-++.. ..+.|+.+++-++|.|.||... .++|+
T Consensus 80 s~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~L-----A~p~a--- 151 (447)
T KOG0259|consen 80 SQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSL-----ANPGA--- 151 (447)
T ss_pred CHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHh-----cCCCC---
Confidence 57788899998876422 1112234456678888877755432 1358999999999999999977 23322
Q ss_pred ccCCCccccccceEEEEEcCCCCCCcccccccc-CCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcc
Q 003466 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~sYHG~t~~als~t-g~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~ 573 (818)
.|+.-+-+|- .+.+.+.. +...+.. + + +|+
T Consensus 152 -------------NILlPrPGfp--~Y~~~a~~~~lEVR~y--------------d------------l-LPe------- 182 (447)
T KOG0259|consen 152 -------------NILLPRPGFP--LYDTRAIYSGLEVRYY--------------D------------L-LPE------- 182 (447)
T ss_pred -------------ceecCCCCCc--hHHHhhhhcCceeEee--------------c------------c-cCc-------
Confidence 3444333331 11111111 0000000 0 0 111
Q ss_pred ccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc
Q 003466 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (818)
Q Consensus 574 ~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~ 653 (818)
..|+ .| ++.+|.+++ ..++|.||+.| ..-.|.+. +..-|++|.++|+++
T Consensus 183 -----------~~we--ID--------L~~veal~D-------ENT~AivviNP--~NPcGnVy-s~~HL~kiae~A~kl 231 (447)
T KOG0259|consen 183 -----------KDWE--ID--------LDGVEALAD-------ENTVAIVVINP--NNPCGNVY-SEDHLKKIAETAKKL 231 (447)
T ss_pred -----------ccce--ec--------hHHHHHhhc-------cCeeEEEEeCC--CCCCcccc-cHHHHHHHHHHHHHh
Confidence 0111 01 356666665 35788899999 46666655 899999999999999
Q ss_pred CCcEEEeecccCcccCC-c-cchhccc-CCCCcEEE--eccccc-CCccccceeecch--------HHHhhccCC-----
Q 003466 654 KIPVIFDEVFTGFWRLG-V-ETTADLL-GCVPDIAC--YGKLLT-GGVIPLAATLATN--------AVFDSFVGD----- 714 (818)
Q Consensus 654 gilLI~DEV~TGfGRtG-~-~~a~e~~-gv~PDivt--lgKgLg-gGy~PlsAvl~~~--------~i~~~l~~~----- 714 (818)
|+++|.|||..-+ ..| + +-....+ -+.|=|.+ ++|+-= =| .-+|-++..+ .+.+.+...
T Consensus 232 gi~vIaDEVY~~~-vfg~~pfvpmg~fssiVPVitlggisKrW~VPG-WRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~ 309 (447)
T KOG0259|consen 232 GIMVIADEVYGHT-VFGDKPFVPMGKFSSIVPVITLGGISKRWIVPG-WRLGWIALHDPRGVFRDTKVVQGIKNFLDIIP 309 (447)
T ss_pred CCeEEehhhccee-ecCCCCccchhhccccCceEeecccccccccCC-ceeeeEEEecccccccchHHHHHHHHHHhccC
Confidence 9999999997433 222 2 2222233 34554332 444321 23 4455554432 211111110
Q ss_pred --hH--------HHH--------HH----------HHHHHHcCCCee-EEEeeeeEEEEEEecCcccCCCchHHHHHHHH
Q 003466 715 --SK--------LWD--------LE----------LIQQISSHRTVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLK 765 (818)
Q Consensus 715 --~~--------~~~--------~~----------l~~~l~~~~~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~ 765 (818)
.. +++ .. --+.|++.|.+. .++-.|.|+-..-.+-. ..++-..-..|++
T Consensus 310 ~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s--~~~~~~dD~dFc~ 387 (447)
T KOG0259|consen 310 GPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLS--LFPDIEDDVDFCQ 387 (447)
T ss_pred CccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchh--hhccccccHHHHH
Confidence 00 111 11 123456677766 67777766543211110 0001112345777
Q ss_pred HHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 766 KLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 766 ~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+|. |+-+++-|+ .|-+|+. ++..++.+++++++|++.-.+-.
T Consensus 388 kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 388 KLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred HHhhhcceEEeccccccCCCeEEEE--EccChHHHHHHHHHHHHHHHhhh
Confidence 765 888999884 3767665 45778899999999988775543
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.8e-05 Score=85.16 Aligned_cols=169 Identities=12% Similarity=0.111 Sum_probs=97.2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchhccc-CCCCcEE---Eecccc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDIA---CYGKLL 691 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PDiv---tlgKgL 691 (818)
+..++++-. .++-.|.+. +.+.+++|.++|++||+++|.||++.+|.--|. ......+ .....++ +|||.+
T Consensus 194 ~~~~i~~~~-P~NPTG~v~-s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~ 271 (423)
T PLN02397 194 GSFVLLHAC-AHNPTGVDP-TPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNM 271 (423)
T ss_pred CCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccC
Confidence 344444432 277778777 789999999999999999999999998832121 1111111 1111233 799999
Q ss_pred c-CCccccceee--c-chHHHh----hcc--------CChH--------HHH-----------------------HHHHH
Q 003466 692 T-GGVIPLAATL--A-TNAVFD----SFV--------GDSK--------LWD-----------------------LELIQ 724 (818)
Q Consensus 692 g-gGy~PlsAvl--~-~~~i~~----~l~--------~~~~--------~~~-----------------------~~l~~ 724 (818)
+ .| +-+|.++ + .+++++ .+. .... .+. +.+.+
T Consensus 272 ~~~G-~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~ 350 (423)
T PLN02397 272 GLYG-ERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYD 350 (423)
T ss_pred CCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 67 6888873 3 443322 111 1000 010 01122
Q ss_pred HHHcCCC---eeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeecCCEEEEECCCCChHHHHHHHHHH
Q 003466 725 QISSHRT---VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLK 800 (818)
Q Consensus 725 ~l~~~~~---v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~ 800 (818)
.+++++. ...+...|.++.+--.+ ..+++.|+ +.||++.+.+ |+... ..+++.|++++++
T Consensus 351 ~L~~~~~~~~~~~~~p~gg~fl~~~l~------------~~~~~~Ll~~~~V~v~~~~---Ri~~~-~~~~~~i~~~~~~ 414 (423)
T PLN02397 351 ALEARGSPGDWSHITKQIGMFSFTGLN------------KEQVDRMTKEYHIYMTRDG---RISMA-GLSSKNVPYLADA 414 (423)
T ss_pred HHHhcCCCCCCCcccCCceEEEecCCC------------HHHHHHHHHhCCEEECCCC---eEEEe-eCCHHHHHHHHHH
Confidence 3333321 22233445554442111 23677776 6699997655 45442 2778999999999
Q ss_pred HHHHHH
Q 003466 801 LYQRLE 806 (818)
Q Consensus 801 l~~~l~ 806 (818)
|.++++
T Consensus 415 i~~~~~ 420 (423)
T PLN02397 415 IHAVVT 420 (423)
T ss_pred HHHHHh
Confidence 999874
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.4e-05 Score=88.43 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=52.3
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCC--
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGG-- 694 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggG-- 694 (818)
++.+|++|.. .+..|.... +++|.++|+++|+++|+||++.. +..+.. ...-.|++ .++|.++|-
T Consensus 134 ~tklV~le~P-~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~-~~~~~p-----~~~g~Divv~S~sK~l~G~~~ 202 (377)
T PRK07671 134 NTKAIYVETP-TNPLLKITD----IKKISTIAKEKGLLTIVDNTFMT-PYWQSP-----ISLGADIVLHSATKYLGGHSD 202 (377)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCCc-cccCCh-----hhhCCeEEEecCcccccCCcc
Confidence 5678888865 566666554 99999999999999999999842 122221 12234776 588999851
Q ss_pred ccccceeec-chHHHhhc
Q 003466 695 VIPLAATLA-TNAVFDSF 711 (818)
Q Consensus 695 y~PlsAvl~-~~~i~~~l 711 (818)
.+ .|++++ ++++++.+
T Consensus 203 ~~-~G~~v~~~~~l~~~~ 219 (377)
T PRK07671 203 VV-AGLVVVNSPELAEDL 219 (377)
T ss_pred ce-eEEEEeCcHHHHHHH
Confidence 11 222444 55665543
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00027 Score=80.09 Aligned_cols=172 Identities=13% Similarity=0.144 Sum_probs=103.4
Q ss_pred EEEccccccCCCcccCCHHHHHHHHHHHHh-----cCCcEEEeecccCcccCCccch--h-cccCCCCcE--E---Eecc
Q 003466 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVETT--A-DLLGCVPDI--A---CYGK 689 (818)
Q Consensus 623 VIvEPV~~g~gG~~~~p~~fl~~LreLc~~-----~gilLI~DEV~TGfGRtG~~~a--~-e~~gv~PDi--v---tlgK 689 (818)
++.-| ++-.|... +.+-+++|.++|++ |++++|.||++..|--.++... . ...+..+.+ + .+||
T Consensus 151 ~~~~P--~NPTG~~~-s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK 227 (388)
T PRK08637 151 ILNFP--NNPTGYTP-TEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATK 227 (388)
T ss_pred EEeCC--CCCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccc
Confidence 33445 78888666 88999999998875 9999999999987733343110 1 111223332 2 5899
Q ss_pred ccc-CCccccceeecc------hHHHhhccC-----------C-hH-------------HHHH-------H-------HH
Q 003466 690 LLT-GGVIPLAATLAT------NAVFDSFVG-----------D-SK-------------LWDL-------E-------LI 723 (818)
Q Consensus 690 gLg-gGy~PlsAvl~~------~~i~~~l~~-----------~-~~-------------~~~~-------~-------l~ 723 (818)
..+ .| +-+|.+++. +++++.+.. . +. .+.+ . +.
T Consensus 228 ~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 306 (388)
T PRK08637 228 EEFVWG-FRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTK 306 (388)
T ss_pred cCCCcc-cceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 755 45 788888743 455544321 0 00 0100 0 11
Q ss_pred HHHHcCC---CeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeecC-CEEEEECCCCChHHHHHHH
Q 003466 724 QQISSHR---TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-NVIYLMCGPCSSPEVCSQL 797 (818)
Q Consensus 724 ~~l~~~~---~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~g-~~ir~~ppl~~t~edId~~ 797 (818)
+.++.++ .+.-.. ..|+++-+.+. . ..+.++++.|+ ++||.+.+.+ +.+|+.... .+++++++.
T Consensus 307 ~~l~~~~~~~~~~~~~~~~g~~~~~~l~-~--------~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~-~~~~~i~~~ 376 (388)
T PRK08637 307 EVLYDGKYDDAWQAYPFNSGYFMCLKLK-G--------VDAEELRVHLLEKYGIGTIALNETDLRIAFSC-VEEEDIPEL 376 (388)
T ss_pred HHHHhhCCCCCcccccccceEEEEecCC-h--------HHHHHHHHHHhhhcceEEEeccCCceEEEeec-CCHHHHHHH
Confidence 2222331 122222 23555555553 1 23567888886 6799887644 568887765 678999999
Q ss_pred HHHHHHHHHHH
Q 003466 798 LLKLYQRLEEF 808 (818)
Q Consensus 798 ~~~l~~~l~~l 808 (818)
+++|.++++.+
T Consensus 377 ~~~l~~~~~~~ 387 (388)
T PRK08637 377 FDSIYKAIKDL 387 (388)
T ss_pred HHHHHHHHHhc
Confidence 99999888654
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-05 Score=89.34 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (818)
+.+++.+. +++.+|++|.+ .+..|.+.+ +++|.++|++||+++|+|++++.. .. ++-...-
T Consensus 122 e~l~~~l~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~t~a~~----~~--~~~~~~g 182 (397)
T PRK05939 122 QNVAAAIR--------PNTRMVFVETI-ANPGTQVAD----LAGIGALCRERGLLYVVDNTMTSP----WL--FRPKDVG 182 (397)
T ss_pred HHHHHhCC--------CCCeEEEEECC-CCCCCCHHh----HHHHHHHHHHcCCEEEEECCcccc----cc--cCccccC
Confidence 45666553 35678999987 777787654 999999999999999999998421 11 1111223
Q ss_pred CcEE--EecccccC-Cccccceeec
Q 003466 682 PDIA--CYGKLLTG-GVIPLAATLA 703 (818)
Q Consensus 682 PDiv--tlgKgLgg-Gy~PlsAvl~ 703 (818)
.|++ .++|.++| | --++.+++
T Consensus 183 aDivv~S~sK~~~g~g-~~igg~v~ 206 (397)
T PRK05939 183 ASLVINSLSKYIAGHG-NALGGAVT 206 (397)
T ss_pred CEEEEecCeecccCCC-CeEEEEEe
Confidence 5766 68899986 4 33444444
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-05 Score=88.16 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=86.3
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.+++++||++|+..|+...+ +.| ..||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~av~~sSGt~Al~~al~~ll-----~~G----------------d~Vi~~~~~y~~t 116 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGG---VGAIATASGQAALHLAIATLM-----GAG----------------SHIVASSALYGGS 116 (433)
T ss_pred CcChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEeCCccHHH
Confidence 4567889999999999874 468999999999999987542 122 2678877777763
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. ..+... .. + .|.. +.|-|.+ |
T Consensus 117 ~-~~~~~~-l~--~----------~Gi~------------------------------v~~vd~~-------d------- 138 (433)
T PRK08134 117 H-NLLHYT-LR--R----------FGIE------------------------------TTFVKPG-------D------- 138 (433)
T ss_pred H-HHHHHH-Hh--h----------CCeE------------------------------EEEECCC-------C-------
Confidence 2 111100 00 0 0000 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T 664 (818)
.+.+++.|. .++.+|++|.+ .+..|.+.+ +++|.++|++||+++|+|.+|.
T Consensus 139 -~~~l~~~i~--------~~TklV~~e~~-~np~g~v~D----i~~I~~la~~~gi~livD~t~a 189 (433)
T PRK08134 139 -IDGWRAAIR--------PNTRLLFGETL-GNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT 189 (433)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CcccCcccC----HHHHHHHHHHcCCEEEEECCCc
Confidence 145666664 35678999986 777777776 9999999999999999999984
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.2e-05 Score=85.83 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=96.2
Q ss_pred CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.++...+|+++|+++.+. ..++.++||..|+..++..++ +.| ..||+....|.|..
T Consensus 59 ~nPtv~~lE~~la~leg~---~~av~~~SG~aAi~~al~all-----~~G----------------D~VI~~~~~Y~~T~ 114 (432)
T PRK06702 59 GNPTLAAFEQKLAELEGG---VGAVATASGQAAIMLAVLNIC-----SSG----------------DHLLCSSTVYGGTF 114 (432)
T ss_pred CCcHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHhc-----CCC----------------CEEEECCCchHHHH
Confidence 367889999999998874 578889999999999998541 223 26888888887643
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
.. +... . ...|.. +.|-|. ..|
T Consensus 115 ~~-~~~~---l----------~~~Gi~------------------------------v~~vd~------~~d-------- 136 (432)
T PRK06702 115 NL-FGVS---L----------RKLGID------------------------------VTFFNP------NLT-------- 136 (432)
T ss_pred HH-HHHH---H----------HHCCCE------------------------------EEEECC------CCC--------
Confidence 21 1100 0 000000 001110 000
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
.+.+++.|. .+..+|++|.. ....+.++. +++|.++|++||+++|+|++.. ....++-+..
T Consensus 137 ~~~l~~~I~--------~~Tk~I~~e~p-gnP~~~v~D----i~~I~~iA~~~gi~livD~T~~------tP~~~~pl~~ 197 (432)
T PRK06702 137 ADEIVALAN--------DKTKLVYAESL-GNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA------TPYLCQAFEH 197 (432)
T ss_pred HHHHHHhCC--------cCCeEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEECCCC------chhhCChhhc
Confidence 145666664 35678999975 554554444 9999999999999999999972 2333443333
Q ss_pred CCcEE--EecccccC
Q 003466 681 VPDIA--CYGKLLTG 693 (818)
Q Consensus 681 ~PDiv--tlgKgLgg 693 (818)
-.||+ .++|-++|
T Consensus 198 GADIvv~S~TKy~~G 212 (432)
T PRK06702 198 GANIIVHSTTKYIDG 212 (432)
T ss_pred CCCEEEEccccccCC
Confidence 46766 58897775
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00014 Score=85.21 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=55.6
Q ss_pred cEEEEE-EccccccCCCcccCCHHHHHHHHHHHHh--cCCcEEEeecccCcccCCccchhcccCCCCc----EEEecccc
Q 003466 619 CIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLL 691 (818)
Q Consensus 619 ~iAAVI-vEPV~~g~gG~~~~p~~fl~~LreLc~~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD----ivtlgKgL 691 (818)
++.+|+ +-| ++-.|.+. +.+.+++|.++|++ +|+++|.|||+..|. +.+.. .....|| +-+|||..
T Consensus 241 ~tkai~l~nP--~NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~--~~~~s--~~~~~~~~~I~v~SfSK~f 313 (527)
T PRK09275 241 SIKALFLVNP--SNPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFV--DDFRS--LFAVLPYNTILVYSFSKYF 313 (527)
T ss_pred CCCEEEEeCC--cCCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhc--ccccC--HHHhCCCCEEEEeehhhhc
Confidence 455555 566 67778766 89999999999964 599999999997763 12111 1112343 23799998
Q ss_pred c-CCccccceeecchH
Q 003466 692 T-GGVIPLAATLATNA 706 (818)
Q Consensus 692 g-gGy~PlsAvl~~~~ 706 (818)
+ .| +-+|.++++++
T Consensus 314 ~mtG-~RlG~i~~~~~ 328 (527)
T PRK09275 314 GATG-WRLGVIALHED 328 (527)
T ss_pred cCcH-hHHhhhhcCch
Confidence 7 56 68888888875
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.7e-05 Score=86.72 Aligned_cols=184 Identities=13% Similarity=0.078 Sum_probs=103.5
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEEeCChh-HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYFSDNGS-TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f~~SGs-eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.....++++.+++.+|......++++++|+ .|+..|+..+ +.. + +....||.-..+ |-++
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~al-r~~--~---------------~~gd~VI~p~~t-h~S~ 164 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSAL-RHK--R---------------PKAKYVIWPRID-QKSC 164 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHc-CCc--C---------------CCCCEEEEECcC-hHHH
Confidence 456678888888888742223688999999 6888887766 311 0 111356666655 7777
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
.-++.+.|.... +++. +..++.+ --|
T Consensus 165 ~kAi~~~G~~pv--------------~Vd~-----------~~d~~~~-----------~iD------------------ 190 (444)
T TIGR03531 165 IKAISTAGFEPR--------------VIET-----------VLDGDEL-----------TTD------------------ 190 (444)
T ss_pred HHHHHHcCCeEE--------------Eeee-----------eecCcCC-----------CcC------------------
Confidence 777777654310 0000 0001101 001
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh---cc
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DL 677 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~---e~ 677 (818)
.+.|++.|.+ ..++.+.+|+..|- .+..|. ..-+++|.++|++||+.+|+|+++. ++- ..+.. ..
T Consensus 191 ~e~Le~aIt~----~~~kai~~Vv~Tp~-t~~~g~----~ddL~eIa~la~k~gI~lIvDaAyg-~~~--~~~~~~~~~g 258 (444)
T TIGR03531 191 VEDIERAIEE----IGPDNILCVLSTTS-CFAPRS----PDDIEEIAKICANYDIPHIVNNAYG-LQS--NKYMELINKA 258 (444)
T ss_pred HHHHHHHHHh----ccCCCEEEEEEcCC-cCCCcc----hhCHHHHHHHHHHcCCEEEEECcCc-CcC--hhhhhhhhcc
Confidence 2667778763 22356778887774 233333 3349999999999999999999994 311 11110 11
Q ss_pred cCC-CCcEEE--ecccccCCccccceeec-chHHHhhc
Q 003466 678 LGC-VPDIAC--YGKLLTGGVIPLAATLA-TNAVFDSF 711 (818)
Q Consensus 678 ~gv-~PDivt--lgKgLggGy~PlsAvl~-~~~i~~~l 711 (818)
..+ ..|+++ +.|.+... ..-|++++ ++++++.+
T Consensus 259 ~~~Grad~vv~s~hK~l~~p-g~Gg~I~~~d~el~~~i 295 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVP-VGGAIIYSFDENFIQEI 295 (444)
T ss_pred ccccCCCeEEEeCccCCCCC-CCEEEEEECCHHHHHHH
Confidence 112 357765 45766531 01344546 56665544
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.3e-06 Score=89.83 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (818)
+.+++.+.+ +++.-+.++..|. ..|...+ +++|.++|++||+++|+||+|.++-..+..+-.......
T Consensus 143 ~~l~~~l~~-----~~~~k~v~l~~p~---~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 143 ETFKKALIE-----HPDAKAAVITNPT---YYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred HHHHHHHHh-----CCCceEEEEECCC---CCCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 566777752 2233345555674 2566665 899999999999999999999642222211111111224
Q ss_pred CcEE--EecccccC
Q 003466 682 PDIA--CYGKLLTG 693 (818)
Q Consensus 682 PDiv--tlgKgLgg 693 (818)
.|++ .+.|.|+|
T Consensus 211 ~div~~S~hK~l~g 224 (294)
T cd00615 211 ADIVVQSTHKTLPA 224 (294)
T ss_pred CcEEEEchhcccch
Confidence 6776 57898865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-05 Score=84.06 Aligned_cols=179 Identities=16% Similarity=0.198 Sum_probs=114.5
Q ss_pred hhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceE
Q 003466 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (818)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~ 508 (818)
++..|+. +....+|-...|+++++.+=|+ -..+-+.||-.|.-.|+--.. +.|+ .
T Consensus 49 l~~~G~i-YsRi~NPT~~vlE~RiAaLEGG---~aa~a~aSG~AA~~~ai~~la-----~aGD----------------~ 103 (426)
T COG2873 49 LKEPGNI-YTRIMNPTTDVLEERIAALEGG---VAALAVASGQAAITYAILNLA-----GAGD----------------N 103 (426)
T ss_pred CCcCCce-eeeccCchHHHHHHHHHHhhcc---hhhhhhccchHHHHHHHHHhc-----cCCC----------------e
Confidence 4444443 2234577888999999997653 355667799999888887651 2333 6
Q ss_pred EEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhh
Q 003466 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (818)
Q Consensus 509 II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~ 588 (818)
||+-..-|-|+. .-.+.+ ++..|+ +++|-|.+
T Consensus 104 iVss~~LYGGT~-~lf~~t-------------l~~~Gi------------------------------~v~fvd~~---- 135 (426)
T COG2873 104 IVSSSKLYGGTY-NLFSHT-------------LKRLGI------------------------------EVRFVDPD---- 135 (426)
T ss_pred eEeeccccCchH-HHHHHH-------------HHhcCc------------------------------EEEEeCCC----
Confidence 888887776642 222222 000111 01122210
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCccc
Q 003466 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (818)
Q Consensus 589 ~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR 668 (818)
+ .+.++.+|+ ++..||.+|.+ .+.++.++. ++++.++|++||++||+|..++.
T Consensus 136 ---d--------~~~~~~aI~--------~nTkavf~Eti-gNP~~~v~D----ie~ia~iAh~~gvpliVDNT~at--- 188 (426)
T COG2873 136 ---D--------PENFEAAID--------ENTKAVFAETI-GNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFAT--- 188 (426)
T ss_pred ---C--------HHHHHHHhC--------cccceEEEEec-cCCCccccC----HHHHHHHHHHcCCcEEEecCCCc---
Confidence 0 155666775 57899999998 777777665 89999999999999999998842
Q ss_pred CCccchhcccCCCCcEEE--ecccccC-CccccceeecchHHHhhc
Q 003466 669 LGVETTADLLGCVPDIAC--YGKLLTG-GVIPLAATLATNAVFDSF 711 (818)
Q Consensus 669 tG~~~a~e~~gv~PDivt--lgKgLgg-Gy~PlsAvl~~~~i~~~l 711 (818)
. +.++-+..-.||++ +.|=+|| | -.||.++...--+|+-
T Consensus 189 -p--yl~rP~~hGADIVvHS~TK~igGhG-t~iGG~iVD~G~FDw~ 230 (426)
T COG2873 189 -P--YLCRPIEHGADIVVHSATKYIGGHG-TAIGGVIVDGGKFDWT 230 (426)
T ss_pred -c--eecchhhcCCCEEEEeecccccCCc-cccceEEEeCCccccc
Confidence 2 33444455678884 7898887 5 5677777655444443
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00025 Score=80.39 Aligned_cols=199 Identities=13% Similarity=0.080 Sum_probs=108.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc----Cc------ccCCc
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT----GF------WRLGV 671 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T----Gf------GRtG~ 671 (818)
+.+++.|+. .+++++..+.++=+ .+.+|-.+.|.+.+++++++|++||+.+++|=+-- -| +-+|.
T Consensus 170 ~~le~~I~~----~g~~~i~~v~~tlt-~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~ 244 (467)
T TIGR02617 170 EGLERGIEE----VGPNNVPYIVATIT-CNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNW 244 (467)
T ss_pred HHHHHHHhh----cCCCCceeeeeeEE-EecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCC
Confidence 667778864 23467888888866 45556666699999999999999999999993210 00 11111
Q ss_pred ---cchhcccCCCCcE--EEecccccCCccccceeec-chH-HHhhccC---------C-----h---H-----------
Q 003466 672 ---ETTADLLGCVPDI--ACYGKLLTGGVIPLAATLA-TNA-VFDSFVG---------D-----S---K----------- 716 (818)
Q Consensus 672 ---~~a~e~~gv~PDi--vtlgKgLggGy~PlsAvl~-~~~-i~~~l~~---------~-----~---~----------- 716 (818)
-.+.+.+. ..|. +|++|+++. |+|.+++ +++ +.+.+.. + + +
T Consensus 245 si~eI~rE~~~-~aDsvt~slsKglgA---pvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e 320 (467)
T TIGR02617 245 SIEQITRETYK-YADMLAMSAKKDAMV---PMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_pred CHHHHHHHhhc-cCCEEEEEcCCCCCC---cccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhh
Confidence 01111111 2454 488898873 6555554 443 2221111 0 0 0
Q ss_pred -----HHH------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEe---------
Q 003466 717 -----LWD------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMR--------- 775 (818)
Q Consensus 717 -----~~~------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~--------- 775 (818)
++. +-+-+.|.+.+... ++--|.-+-++-..--++.+....-+..++-.|+ +-||=..
T Consensus 321 ~~~~~yl~~ri~qv~yl~~~L~~~Gvpi-~~~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~r 399 (467)
T TIGR02617 321 GMNLDWLAYRINQVQYLVNGLEEIGVVC-QQAGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGR 399 (467)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCcE-EecCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceeccc
Confidence 111 12345555554422 2222333333332211122222223555665665 4455321
Q ss_pred -ec--------CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHHH
Q 003466 776 -PL--------GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 776 -p~--------g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~~ 810 (818)
|. -..+|+..|- +.|.+++|.+++++..+.+.-+.
T Consensus 400 d~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~ 444 (467)
T TIGR02617 400 DPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAPN 444 (467)
T ss_pred CCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhhh
Confidence 11 1567887777 78999999999999888776543
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00085 Score=77.40 Aligned_cols=261 Identities=10% Similarity=0.015 Sum_probs=146.7
Q ss_pred CChhHHHHHHHHHhccCCCC-CCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 441 VYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~-l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+++...++-+.++++++-+. -..-+++++|||||..||.+| |.+.. ..+++....-|-+
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aA-Re~~~-------------------~~vvy~S~~aH~S 190 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVG-REVFP-------------------DGILYASRESHYS 190 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHH-HhhcC-------------------CcEEEEcCCccHH
Confidence 45666677777888776321 013588999999999999999 54421 1367777777876
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
..-++.+-|... ..++....++ -|
T Consensus 191 v~KAa~llgi~~----------------------------~~Vp~d~~g~-----------mD----------------- 214 (470)
T PLN02263 191 VFKAARMYRMEC----------------------------VKVDTLVSGE-----------ID----------------- 214 (470)
T ss_pred HHHHHHhcCCcc----------------------------eEeccCCCCc-----------Cc-----------------
Confidence 655555544321 0111100000 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC-----cEEEeecccCcccCCccch
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWRLGVETT 674 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi-----lLI~DEV~TGfGRtG~~~a 674 (818)
.+.|++.|.+ ...+..+|+.--- ...-|.+-| +++|.++|++||+ .|.+|=+..|+-- .+.-
T Consensus 215 -~~aL~~aI~~-----d~~~P~iVvataG-TT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~l--Pf~~ 281 (470)
T PLN02263 215 -CADFKAKLLA-----NKDKPAIINVNIG-TTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLMM--PFVK 281 (470)
T ss_pred -HHHHHHHHHh-----CCCCcEEEEEEec-CCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhHh--hhcc
Confidence 2567777753 2233444443322 445677776 9999999999997 9999988877511 1110
Q ss_pred -hccc-C-CCCcEEEe--cccccCCccccceeecchHHHhhccCCh-------------H-------HH-----------
Q 003466 675 -ADLL-G-CVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDS-------------K-------LW----------- 718 (818)
Q Consensus 675 -~e~~-g-v~PDivtl--gKgLggGy~PlsAvl~~~~i~~~l~~~~-------------~-------~~----------- 718 (818)
...+ + ...|=+++ =|-++.- +|.|+++.+++..+.+.... + .|
T Consensus 282 ~~~~~df~~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~ 360 (470)
T PLN02263 282 RAPKVTFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGF 360 (470)
T ss_pred cccccCCCcCccEEEECCccccCCC-cCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHH
Confidence 0011 1 12454443 3666666 58888888876554332211 1 11
Q ss_pred ----------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCC
Q 003466 719 ----------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPC 788 (818)
Q Consensus 719 ----------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~ 788 (818)
.+.+.+.+++.+...-..-....+. |..+ ...+..+|..+...++.+++.....
T Consensus 361 ~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~--f~~p--------------~~~~~~~gW~L~~~~~~~Hivvmph 424 (470)
T PLN02263 361 QKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVV--FERP--------------KDEEFVRRWQLACQGNIAHVVVMPS 424 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEE--EecC--------------chHHhhcceEEccCCCcEEEEEcCC
Confidence 1122334444432111112222222 3222 0112456877777666677777776
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 003466 789 SSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 789 ~t~edId~~~~~l~~~l~~ 807 (818)
++.+.||++++-|.+..+.
T Consensus 425 v~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 425 VTIEKLDYFLKELVEKRST 443 (470)
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 8899999999999888764
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=80.03 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=61.5
Q ss_pred CEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---C---HH
Q 003466 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---N---EV 295 (818)
Q Consensus 222 d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~---~---~~ 295 (818)
|++||.+.+++... ........+ -+|+|+.....++..+...++.++..+.+..++|+|++... . .+
T Consensus 64 d~viiD~p~~~~~~------~~~~l~~ad-~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG------FITAIAPAD-EALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH------HHHHHHhCC-cEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHH
Confidence 89999998764332 222222222 48889999999999999999999887888999999998321 1 24
Q ss_pred HHHHhhcCCCCEEe-cCCCCC
Q 003466 296 PLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 296 ~l~~~~~~~~pvlg-iP~~~~ 315 (818)
.+++.+ +.|+++ ||+.+.
T Consensus 137 ~~~~~~--~~~v~~~Ip~~~~ 155 (179)
T cd02036 137 DIEEIL--GVPLLGVIPEDPA 155 (179)
T ss_pred HHHHHh--CCCEEEEecCCHH
Confidence 456666 899999 897544
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.3e-05 Score=85.38 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=65.2
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChH---HHHHHHHHHHHhCC--CcEEEEEEccCCC-CC
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKLRG--YDVVAVVFEDHGL-VN 293 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i---~~~~~~~~~l~~~~--~~v~gvi~N~~~~-~~ 293 (818)
.+|++||-..|++.++ .....+++.+.--||+|+....-++ +.+..+++.++..| .++.|+|+|+... ..
T Consensus 147 ~~DyVliD~~gdv~~g----gf~l~i~~~~ad~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~~ 222 (329)
T cd02033 147 DFDYVLLDFLGDVVCG----GFGLPIARDMAQKVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGE 222 (329)
T ss_pred cCCEEEEecCCcceec----cccchhhhcCCceEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcch
Confidence 3899999998865532 1234444444446788888888777 45677888887664 6789999999843 33
Q ss_pred HHHHHHhhcCCCCEEe-cCCCCCCC
Q 003466 294 EVPLMSYLRNRVPVLV-LPPLPQDS 317 (818)
Q Consensus 294 ~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (818)
.+.+.+.+ ++|++| ||+.+...
T Consensus 223 ie~~ae~l--gi~vLg~IP~D~~V~ 245 (329)
T cd02033 223 AQAFAAHA--GIPILAAIPADEELR 245 (329)
T ss_pred HHHHHHHh--CCCEEEECCCCHHHH
Confidence 45555556 999999 99987654
|
This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=98.06 E-value=5e-05 Score=85.37 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
...+...|.++||.+.+. ++.+|+......|++||++++++|+++++++
T Consensus 308 ~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 308 AATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred HHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 456788888999998753 3679999999999999999999999987653
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=82.67 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=77.8
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccC-
Q 003466 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG- 693 (818)
Q Consensus 617 ~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLgg- 693 (818)
++++.+|++|-+ ....+.+.+ +++|.++|+++| +++|.++ |-+..+ ...+.-.|++++| |-++|
T Consensus 146 ~~~tklv~~e~~-snpt~~v~D----i~~I~~la~~~~--lvVD~t~-~s~~~~-----~pl~~gaDivv~S~tK~i~G~ 212 (384)
T PRK06434 146 PSNYDLIYAESI-TNPTLKVPD----IKNVSSFCHEND--VIVDATF-ASPYNQ-----NPLDLGADVVIHSATKYISGH 212 (384)
T ss_pred CCCeeEEEEEcC-CCCCceeec----HHHHHHHHHHcC--eEEECCC-CCcccC-----CchhcCCCEEEeecccccCCC
Confidence 346788999986 555555544 999999999998 4679997 221222 2334557988765 77765
Q ss_pred Cccccceeec-chHHHhhccC------Ch--H---------------HH------HHHHHHHHHcCCCeeEEE-------
Q 003466 694 GVIPLAATLA-TNAVFDSFVG------DS--K---------------LW------DLELIQQISSHRTVQRVV------- 736 (818)
Q Consensus 694 Gy~PlsAvl~-~~~i~~~l~~------~~--~---------------~~------~~~l~~~l~~~~~v~~vr------- 736 (818)
|=.=.|++++ ++++++.+.. .. . .+ ...+.+.|+.||.|..|.
T Consensus 213 ~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~ 292 (384)
T PRK06434 213 SDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIG 292 (384)
T ss_pred CCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHH
Confidence 2112345555 4455443221 00 0 11 123456678888876653
Q ss_pred -----eeeeEEEEEEecCcccCCCchHHHHHHHHHH
Q 003466 737 -----ALGTLCAIELQAAGCNAGYGSLYAASLLKKL 767 (818)
Q Consensus 737 -----g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l 767 (818)
|.|.|++|++... +.+.+|.+.|
T Consensus 293 ~~~~~g~g~~~sf~l~~~--------~~~~~f~~~l 320 (384)
T PRK06434 293 KKVLRGFGGMLSFELRSM--------EDVHKFIRNL 320 (384)
T ss_pred HHhcCCCCceEEEEECCH--------HHHHHHHHhC
Confidence 6788999999632 3455555554
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00025 Score=80.23 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=40.3
Q ss_pred HHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.+...+.++|++++.+ ++.+|+.+....|++||++++++|+++++++++
T Consensus 323 ~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 323 AAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred HHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 4566777888888642 368999999999999999999999998877664
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00067 Score=79.57 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=55.8
Q ss_pred cEEEEE-EccccccCCCcccCCHHHHHHHHHHHHhc--CCcEEEeecccCcccCCccchhcccCCCCc----EEEecccc
Q 003466 619 CIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLL 691 (818)
Q Consensus 619 ~iAAVI-vEPV~~g~gG~~~~p~~fl~~LreLc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PD----ivtlgKgL 691 (818)
++.+|+ +.| ++-.|.+. +.+-+++|.++|++| |+++|.|||+..|- ..+-. .....|| +..|||.+
T Consensus 240 ~~kai~l~nP--~NPTG~vl-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~--~~~~s--l~~~~~~~vI~v~SfSK~f 312 (521)
T TIGR03801 240 SIKALFVVNP--SNPPSVAM-SDESIEKIVDIVANDRPDLMILTDDVYGTFV--DDFRS--LFAELPYNTIGVYSFSKYF 312 (521)
T ss_pred CCcEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHhcCCCeEEEECCCchhhc--ccccc--hhhhCCCCEEEEEcchhhc
Confidence 455544 677 57777766 789999999999987 99999999997663 12111 1122344 23699988
Q ss_pred c-CCccccceeecchH
Q 003466 692 T-GGVIPLAATLATNA 706 (818)
Q Consensus 692 g-gGy~PlsAvl~~~~ 706 (818)
| .| +-+|.++++++
T Consensus 313 g~~G-~RlG~i~~~~~ 327 (521)
T TIGR03801 313 GATG-WRLGTIALHKD 327 (521)
T ss_pred cCch-hhhhhhhcCch
Confidence 6 56 68888888754
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00016 Score=74.89 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhccccccccccccCCC--CEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKME--ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~--d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (818)
+.+.+.++.+.++ | |+|||....+... .....++...+ -||+|+..+.-++..+..+++
T Consensus 134 ~~l~~~l~~l~~~-------------y~~D~IiiD~pp~~~~-----~~~~~l~~~aD-~viiV~~~~~~~~~~~~~~~~ 194 (207)
T TIGR03018 134 QRMRSLLHELARR-------------YPDRIIIIDTPPLLVF-----SEARALARLVG-QIVLVVEEGRTTQEAVKEALS 194 (207)
T ss_pred HHHHHHHHHHHhh-------------CCCCEEEEECCCCcch-----hHHHHHHHhCC-EEEEEEECCCCCHHHHHHHHH
Confidence 4566666666655 6 9999999543322 23344555544 577888888888889888999
Q ss_pred HHHhCCCcEEEEEEc
Q 003466 273 SLKLRGYDVVAVVFE 287 (818)
Q Consensus 273 ~l~~~~~~v~gvi~N 287 (818)
.++ +..+.|+|+|
T Consensus 195 ~l~--~~~~~G~v~N 207 (207)
T TIGR03018 195 ALE--SCKVLGVVLN 207 (207)
T ss_pred Hhc--CCCeEEEEeC
Confidence 887 7899999998
|
Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0005 Score=79.17 Aligned_cols=281 Identities=14% Similarity=0.084 Sum_probs=172.0
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEE-eCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f-~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.+...+|++.|++.+| ++.+.| -|||+..--+.|+.. |.|...+|+ +.+.|....-|-||.-
T Consensus 581 ~~lf~~Le~~Lc~iTG---~D~~s~QPNsGA~GEYaGL~~I-RaY~~~kge-------------~hRnvClIPvSAHGTN 643 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEITG---FDSFSLQPNSGAQGEYAGLRVI-RAYLESKGE-------------GHRNVCLIPVSAHGTN 643 (1001)
T ss_pred HHHHHHHHHHhheeec---ccceeecCCCCcccchhhHHHH-HHHHHhccC-------------CcceeEEEeecccCCC
Confidence 3556789999999998 566655 478888888888887 888777664 3456788889999987
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
-.+..+.|.+.. ++ .+. .+.+++
T Consensus 644 PASA~Magmkvv------------------------------pV-~~~----------~~G~id---------------- 666 (1001)
T KOG2040|consen 644 PASAAMAGMKVV------------------------------PV-GCD----------ANGNID---------------- 666 (1001)
T ss_pred hhhHHhcCCEEE------------------------------Ee-ecc----------CCCCcc----------------
Confidence 666666553310 00 000 012211
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEe----ecccCcccCCccch-h
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD----EVFTGFWRLGVETT-A 675 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~D----EV~TGfGRtG~~~a-~ 675 (818)
..+|...-+ ++.++.||++|-- -+.-|+..+. .+.+.++.++||--+++| .+|.|+.|-|-.++ .
T Consensus 667 ~~dLk~kae-----kh~~~Laa~MvTY--PST~GvfE~~---i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV 736 (1001)
T KOG2040|consen 667 MVDLKAKAE-----KHKDNLAALMVTY--PSTHGVFEEG---IDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADV 736 (1001)
T ss_pred HHHHHHHHH-----HhhhhhheeEEec--cccccccccc---HHHHHHHHHhcCCEEEecCCCccceecccCCccccccc
Confidence 134444444 5678888888774 3455665543 677788889999999999 55889999988765 2
Q ss_pred cccCCCCcEEEecccccCC---ccccceeecchHHHhhccCChH-------------------------------HH---
Q 003466 676 DLLGCVPDIACYGKLLTGG---VIPLAATLATNAVFDSFVGDSK-------------------------------LW--- 718 (818)
Q Consensus 676 e~~gv~PDivtlgKgLggG---y~PlsAvl~~~~i~~~l~~~~~-------------------------------~~--- 718 (818)
.|+++.- ||.=.=||| +-||+ .++.++.++-+... ++
T Consensus 737 ~HLNLHK---TFcIPHGGGGPg~gPIg---VK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmM 810 (1001)
T KOG2040|consen 737 CHLNLHK---TFCIPHGGGGPGMGPIG---VKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMM 810 (1001)
T ss_pred eeecccc---eeeecCCCCCCCCCccc---hhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHh
Confidence 3444431 222222322 22332 23333332211100 00
Q ss_pred ---------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCccc-CCCchHHHHHHHHHHHhCCceEe----ecC
Q 003466 719 ---------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-AGYGSLYAASLLKKLREDGVYMR----PLG 778 (818)
Q Consensus 719 ---------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-~~~~~~~a~~~~~~l~e~Gvlv~----p~g 778 (818)
.+-..++|+.|-.+......| ..+-||.-+-.. ..-....+..++++|.+-|+... |..
T Consensus 811 G~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~~-~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV~ 889 (1001)
T KOG2040|consen 811 GSGGLKDASKIAILNANYMAKRLESHYKILFRGENG-LVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPVA 889 (1001)
T ss_pred cccccchhhHHHhhhhHHHHHHHhhccceeEecCCc-ceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccccccC
Confidence 112334565554333222233 566666443110 00112347789999999999875 456
Q ss_pred CEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhHH
Q 003466 779 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 813 (818)
Q Consensus 779 ~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~~ 813 (818)
+++.+-|.---+.+|+|++++++-..-+|+.++++
T Consensus 890 gtLMIEPTESE~k~ElDRfcdAliSIreEI~~ie~ 924 (1001)
T KOG2040|consen 890 GTLMIEPTESEDKAELDRFCDALISIREEIAQIEE 924 (1001)
T ss_pred CceEeccCccccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999888899999999999888877776654
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0025 Score=75.07 Aligned_cols=81 Identities=15% Similarity=-0.041 Sum_probs=53.4
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEEEec--ccccCCc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACYG--KLLTGGV 695 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtlg--KgLggGy 695 (818)
++.+|+.-.. ....|.+.| +++|.++|++||+.|.+|=++.|....-.-+....-|+ ..|.++++ |.+.+-
T Consensus 265 ~~~~vvataG-tt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P- 338 (522)
T TIGR03799 265 KPLAIVGVAG-TTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP- 338 (522)
T ss_pred CcEEEEEEec-CcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-
Confidence 4555554332 345677777 99999999999999999999865422111111112355 67988776 666665
Q ss_pred cccceeecch
Q 003466 696 IPLAATLATN 705 (818)
Q Consensus 696 ~PlsAvl~~~ 705 (818)
++.|+++.++
T Consensus 339 ~g~G~llvr~ 348 (522)
T TIGR03799 339 MGAGMVLFKD 348 (522)
T ss_pred cccEEEEEeC
Confidence 4677887764
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.5e-05 Score=77.09 Aligned_cols=66 Identities=21% Similarity=0.146 Sum_probs=46.4
Q ss_pred CCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCC--CcEEEEEEccCCCCC
Q 003466 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRG--YDVVAVVFEDHGLVN 293 (818)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~--~~v~gvi~N~~~~~~ 293 (818)
+|++||++.+|+..+ ...+-..---+|+|+....-.+..+...++.++..+ .++.|+|+|++...+
T Consensus 95 yD~iiiD~~~~~~~~-------~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP-------VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH-------HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH-------HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 999999998866554 111222222266777777667888888888888766 568999999995553
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00071 Score=75.38 Aligned_cols=276 Identities=15% Similarity=0.079 Sum_probs=165.7
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEE-eCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f-~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.+...+|+++|++.+| ++.|.+ -++|+..=-+.|-+. |.|+..+|+ . .++++....|-||.-
T Consensus 108 l~li~~Lq~~L~~ITG---~DavsLQP~AGAqGE~aGll~I-r~YHe~rG~------------~-~R~~~LIP~SAHGTN 170 (496)
T COG1003 108 LELIYELQEWLKEITG---MDAVSLQPNAGAQGEYAGLLAI-RAYHESRGE------------G-HRNICLIPDSAHGTN 170 (496)
T ss_pred HHHHHHHHHHHHHhcC---CceeeccCCCCcchhhHHHHHH-HHHHHHcCC------------C-cCcEEEeeccccCCC
Confidence 3556789999999998 566655 477998888888887 778777664 2 456788889999977
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
-.+.++.|-+. |.++..- -.+. +
T Consensus 171 PASAam~G~~V------------------------------V~V~~~~-----------~G~V-----------D----- 193 (496)
T COG1003 171 PASAAMAGFKV------------------------------VVVKCDE-----------NGNV-----------D----- 193 (496)
T ss_pred hhhHhhcCceE------------------------------EEEecCC-----------CCCc-----------c-----
Confidence 66666654321 1111100 0000 0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEee----cccCcccCCccch-
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDE----VFTGFWRLGVETT- 674 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DE----V~TGfGRtG~~~a- 674 (818)
.++|+..+. +++||+++ -| +.-|+.- +-.+++.++.+++|..|++|= ++-|.-|-|.+++
T Consensus 194 lddLk~k~~--------~~~AalMiTnP---sT~GvFE---~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~D 259 (496)
T COG1003 194 LDDLRAKAE--------DNLAALMITNP---STLGVFE---EDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFD 259 (496)
T ss_pred HHHHHHHhc--------cceeEEEeccC---cccccch---hhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccc
Confidence 255665553 56666555 45 3345533 347788888899999999994 4668888887654
Q ss_pred hcccCCCCcEEEecccccCCccccc-eeecchHHHhhccC----ChH-------------------------------HH
Q 003466 675 ADLLGCVPDIACYGKLLTGGVIPLA-ATLATNAVFDSFVG----DSK-------------------------------LW 718 (818)
Q Consensus 675 ~e~~gv~PDivtlgKgLggGy~Pls-Avl~~~~i~~~l~~----~~~-------------------------------~~ 718 (818)
..|+++. =||+-.=||| =|-+ -|..++.+..++-. ... ++
T Consensus 260 V~HlNLH---KTF~iPHGGG-GPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI 335 (496)
T COG1003 260 VVHLNLH---KTFCIPHGGG-GPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYI 335 (496)
T ss_pred eEEeecc---cccccCCCCC-CCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHH
Confidence 3444443 1444444544 2333 24445555544322 000 11
Q ss_pred H----HH--------------HHHHHHc-CCCeeEEEeeeeEEEEEEecCcccC-CCchHHHHHHHHHHHhCCceEe---
Q 003466 719 D----LE--------------LIQQISS-HRTVQRVVALGTLCAIELQAAGCNA-GYGSLYAASLLKKLREDGVYMR--- 775 (818)
Q Consensus 719 ~----~~--------------l~~~l~~-~~~v~~vrg~Gl~~~iel~~~~~~~-~~~~~~a~~~~~~l~e~Gvlv~--- 775 (818)
. +. +.++|+. ++.. ..+.. ...-|++-+.... .-....+..++++|++.|++..
T Consensus 336 ~~mG~~GL~~ase~AvLNANYia~rL~~~y~~~--y~~~~-~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~ 412 (496)
T COG1003 336 RMMGADGLKQASEVAVLNANYIARRLKGYYPVP--YTGEN-RVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMY 412 (496)
T ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHhhhcCccc--cCCCC-cceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCccc
Confidence 0 11 1223332 2221 12222 3334443321100 0011347789999999999885
Q ss_pred -e--cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhH
Q 003466 776 -P--LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 812 (818)
Q Consensus 776 -p--~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~ 812 (818)
| ....+.+-|+-+-|++++|++++++.++.++.+++.
T Consensus 413 FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~ 452 (496)
T COG1003 413 FPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAVP 452 (496)
T ss_pred CccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 457899999999999999999999999998887653
|
|
| >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00023 Score=76.73 Aligned_cols=75 Identities=21% Similarity=0.156 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+.+.+.+.++.++ ||+|||... |........-++...+ -||+|+..+.-++..+..+++.+
T Consensus 200 ~~~~~~l~~l~~~-------------yD~ViiD~p-----p~~~~~d~~~~~~~~d-~vilV~~~~~t~~~~~~~~~~~l 260 (274)
T TIGR03029 200 PAFTDLLNKVMGD-------------YDVVIVDTP-----SAEHSSDAQIVATRAR-GTLIVSRVNETRLHELTSLKEHL 260 (274)
T ss_pred HHHHHHHHHHHhc-------------CCEEEEeCC-----CcccccHHHHHHHhCC-eEEEEEECCCCCHHHHHHHHHHH
Confidence 3455566666544 999999983 3221122333444443 57789998888999999999999
Q ss_pred HhCCCcEEEEEEcc
Q 003466 275 KLRGYDVVAVVFED 288 (818)
Q Consensus 275 ~~~~~~v~gvi~N~ 288 (818)
+..|.++.|+|+|+
T Consensus 261 ~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 261 SGVGVRVVGAVLNQ 274 (274)
T ss_pred HhCCCCEEEEEeCC
Confidence 99999999999996
|
The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). |
| >PRK11670 antiporter inner membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00057 Score=77.04 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=60.9
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCC-EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC--C----
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL--V---- 292 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~--~---- 292 (818)
.||++||-..-|+ +...+.++..+.+. +|+|+....-++..+..+++.++..++++.|+|+|++.. .
T Consensus 215 ~yDyvIID~PPg~------gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~ 288 (369)
T PRK11670 215 DLDYLVLDMPPGT------GDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGH 288 (369)
T ss_pred cCCEEEEeCCCCC------chHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccc
Confidence 3999999985442 22223333333333 677888777777888888888888889999999998621 1
Q ss_pred --------CHHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 293 --------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 293 --------~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
..+.+.+.+ ++|+++ ||.....
T Consensus 289 ~~~if~~~~~~~lae~~--~~~ll~~IP~~~~I 319 (369)
T PRK11670 289 HEPIFGTGGAEKLAEKY--HTQLLGQMPLHISL 319 (369)
T ss_pred hhhhcccchHHHHHHHc--CCcEEEEeCCChHH
Confidence 134445555 899999 9987663
|
|
| >COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00045 Score=74.40 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=66.9
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC----CC---C
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH----GL---V 292 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~----~~---~ 292 (818)
.+|++||+. |-......+.++..+---+|+|+..+.-....+.-+++.++.-+.+|.|||.|.. .. .
T Consensus 166 ~~D~vIID~------PP~~g~~d~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~~g 239 (265)
T COG0489 166 EYDYVIIDT------PPGTGDADATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCGEG 239 (265)
T ss_pred CCCEEEEeC------CCCchHHHHHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcccccCCC
Confidence 399999998 3334556777777776689999999999999999999999999999999999965 11 1
Q ss_pred CHHHHHHhhcCCCCEEe-cCCCCC
Q 003466 293 NEVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 293 ~~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
..+.+-+.. + |++| +|..+.
T Consensus 240 ~~~~~~~~~--~-~~~g~~p~~~~ 260 (265)
T COG0489 240 GGEKYAERY--G-PYLGSIPLDPS 260 (265)
T ss_pred chhhHHHHh--c-cccccCCCChh
Confidence 344444444 5 8888 886554
|
|
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0003 Score=74.39 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHH
Q 003466 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (818)
Q Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (818)
.-+++..+++...+. .|++||.++=|+..|...-...+|+ +|+|+-.---+++.....++.
T Consensus 149 s~~lV~~~kk~a~E~------------~~~~IIDsaaG~gCpVi~sl~~aD~-------ai~VTEPTp~glhD~kr~~el 209 (284)
T COG1149 149 SGKLVTALKKHAKEL------------ADLLIIDSAAGTGCPVIASLKGADL-------AILVTEPTPFGLHDLKRALEL 209 (284)
T ss_pred cchHHHHHHHhhhhh------------cceeEEecCCCCCChHHHhhccCCE-------EEEEecCCccchhHHHHHHHH
Confidence 446667777766551 6999999999999996554555554 578888889999999999999
Q ss_pred HHhCCCcEEEEEEccCCCCCHHHHHHhhcC-CCCEEe-cCCCCCCC
Q 003466 274 LKLRGYDVVAVVFEDHGLVNEVPLMSYLRN-RVPVLV-LPPLPQDS 317 (818)
Q Consensus 274 l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~-~~pvlg-iP~~~~~~ 317 (818)
.+.-|++ .++|+||....+. .|+++.++ ++|+++ ||+..+..
T Consensus 210 ~~~f~ip-~~iViNr~~~g~s-~ie~~~~e~gi~il~~IPyd~~i~ 253 (284)
T COG1149 210 VEHFGIP-TGIVINRYNLGDS-EIEEYCEEEGIPILGEIPYDKDIP 253 (284)
T ss_pred HHHhCCc-eEEEEecCCCCch-HHHHHHHHcCCCeeEECCcchhHH
Confidence 9988888 7999999944444 78888776 999999 99987643
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00094 Score=74.89 Aligned_cols=55 Identities=13% Similarity=-0.037 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHH
Q 003466 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (818)
Q Consensus 419 p~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA 481 (818)
.+..+++.+.++..... . -+...++++++++.+|. ..++-++||+.|.+.||+.+
T Consensus 15 ~~e~~~v~~vl~sg~i~----~-G~~v~~FE~~~ae~~G~---k~ava~~sgT~AL~laL~al 69 (374)
T COG0399 15 EEELAAVQEVLKSGWLT----G-GPFVRRFEQAFAEYLGV---KYAVAVSSGTAALHLALLAL 69 (374)
T ss_pred hHHHHHHHHHHHcCCee----c-ChHHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHhc
Confidence 34555666666543221 1 35678999999999984 68999999999999999966
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00079 Score=75.59 Aligned_cols=207 Identities=17% Similarity=0.140 Sum_probs=118.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCC--ChhHHHHH-HHHHhccCCCCCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENV--YEPALECA-ELLLQGVGKGWASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~--~~~~~eLa-e~L~~~~~~~~l~~v~f~~SGseA~e 475 (818)
-|||..+ .|=. +|+|.+|+.+.+.++ +......+. .+...|.+ +.++.+.+... ..+.|+++++|||-
T Consensus 45 vyld~~a------t~p~-~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~-~dIiFts~ATEs~N 116 (428)
T KOG1549|consen 45 VYLDNQA------TGPM-DPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADP-SDIVFTSGATESNN 116 (428)
T ss_pred EEEecCc------CCCC-CHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCC-CcEEEeCCchHHHH
Confidence 5778654 5656 999999999877664 221111122 23334444 44445555442 45999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++-.-+.+.. + .+..||.+ ..=|.+...++...-. .| +
T Consensus 117 lvl~~v~~~~~~--~--------------~~k~iitl-~~eH~~v~~s~~~l~~--------------~g--~------- 156 (428)
T KOG1549|consen 117 LVLKGVARFFGD--K--------------TKKHIITL-QTEHPCVLDSCRALQE--------------EG--L------- 156 (428)
T ss_pred HHHHHhhccccc--c--------------ccceEEEe-cccCcchhHHHHHHHh--------------cC--e-------
Confidence 999966232211 1 11244444 4455554443322211 11 0
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+..++++... +-| .+.+++.|+ .++.+|.+.-| .++-|+
T Consensus 157 --~Vt~lpv~~~~-----------~~d------------------~~~~~~~i~--------~~T~lv~I~~V-nn~~gv 196 (428)
T KOG1549|consen 157 --EVTYLPVEDSG-----------LVD------------------ISKLREAIR--------SKTRLVSIMHV-NNEIGV 196 (428)
T ss_pred --EEEEeccCccc-----------ccc------------------HHHHHHhcC--------CCceEEEEEec-ccCccc
Confidence 01112222110 111 245566664 47889999998 899999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecch
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATN 705 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~ 705 (818)
..| +++|.++|++.|+.++.|=+| +.|.. -.+--.+.+|.++++ |.+|- =++|+.-+++
T Consensus 197 ~~P----v~EI~~icr~~~v~v~~DaAQ-avG~i----~vDV~eln~D~~s~s~HK~ygp--~~iGaLYvr~ 257 (428)
T KOG1549|consen 197 LQP----VKEIVKICREEGVQVHVDAAQ-AVGKI----PVDVQELNADFLSISAHKIYGP--PGIGALYVRR 257 (428)
T ss_pred ccc----HHHHHHHhCcCCcEEEeehhh-hcCCc----cccHHHcCchheeeecccccCC--CcceEEEEcc
Confidence 998 999999999999999999998 44321 112223456666443 54443 1255555554
|
|
| >TIGR02016 BchX chlorophyllide reductase iron protein subunit X | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00036 Score=76.40 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=56.5
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCCh---HHHHHHHHHHHHhCC--CcEEEEEEccCCC-CC
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG---ISGTISAYESLKLRG--YDVVAVVFEDHGL-VN 293 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~---i~~~~~~~~~l~~~~--~~v~gvi~N~~~~-~~ 293 (818)
.||++||-..|++.++... ..++...---||+|+....-+ .+.+..+++.++..+ +++.|+|+|+... ..
T Consensus 122 ~yD~IliD~~~~~~~~g~~----~~~a~~~Ad~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~~ 197 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFA----TPLARSLAEEVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSGE 197 (296)
T ss_pred cCCEEEEecCCCccccccc----cchhhhhCCeEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCccH
Confidence 3999999986654332110 111111112456777765434 456666777776654 7899999999843 23
Q ss_pred HHHHHHhhcCCCCEEe-cCCCCCCC
Q 003466 294 EVPLMSYLRNRVPVLV-LPPLPQDS 317 (818)
Q Consensus 294 ~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (818)
.+.+.+.. ++|+++ ||+.+...
T Consensus 198 ~~~~~~~~--~i~vLg~IP~d~~i~ 220 (296)
T TIGR02016 198 AQAFAREV--GIPVLAAIPADEELR 220 (296)
T ss_pred HHHHHHHc--CCCeEEECCCCHHHH
Confidence 33344444 999999 99987654
|
This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00074 Score=70.13 Aligned_cols=94 Identities=23% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMS 299 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~ 299 (818)
.+|+|||..=-|+--=...-.-.+|+ +|.|++...-++--+--..++..+-|++=.++|+|++.+. ...++.
T Consensus 133 ~~e~VivDtEAGiEHfgRg~~~~vD~-------vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~-e~~~~~ 204 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGTIEGVDL-------VIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE-EELLRE 204 (255)
T ss_pred cCcEEEEecccchhhhccccccCCCE-------EEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch-hHHHHh
Confidence 48999998854432211111223332 5788887766666665566666677877889999999655 333333
Q ss_pred hhcC-CCCEEe-cCCCCCCCcchh
Q 003466 300 YLRN-RVPVLV-LPPLPQDSSNDL 321 (818)
Q Consensus 300 ~~~~-~~pvlg-iP~~~~~~~~~~ 321 (818)
.... +.+|+| ||+.+.+..-++
T Consensus 205 ~~~~~~~~vlg~iP~d~~v~~~dl 228 (255)
T COG3640 205 LAEELGLEVLGVIPYDPEVVEADL 228 (255)
T ss_pred hhhccCCeEEEEccCCHHHHhccc
Confidence 3333 999999 999988765444
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0014 Score=79.71 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+..+.+.|.++||.+--. .+.+.+..+...|++++++++++|.+..+
T Consensus 556 ~~~l~~~L~~~gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~~~~ 603 (755)
T PRK15029 556 AALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_pred HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 446888888899999754 46777888888999999999998887644
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0013 Score=66.11 Aligned_cols=85 Identities=20% Similarity=0.260 Sum_probs=59.7
Q ss_pred CCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC--CCHHH
Q 003466 219 KMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL--VNEVP 296 (818)
Q Consensus 219 ~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~--~~~~~ 296 (818)
+.+|++||.+.+|... .........+ -+|+|+.....++..+...++.++..+.++ ++|+|++.. ...+.
T Consensus 91 ~~~d~viiDtpp~~~~------~~~~~l~~aD-~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~~~~~~~ 162 (179)
T cd03110 91 EGAELIIIDGPPGIGC------PVIASLTGAD-AALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLNDEIAEE 162 (179)
T ss_pred cCCCEEEEECcCCCcH------HHHHHHHcCC-EEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCCCCCcchHHH
Confidence 3599999999887532 1222222222 367888888888999888889888888775 899999843 22334
Q ss_pred HHHhhcC-CCCEEe-cC
Q 003466 297 LMSYLRN-RVPVLV-LP 311 (818)
Q Consensus 297 l~~~~~~-~~pvlg-iP 311 (818)
++++++. ++|++| ||
T Consensus 163 ~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 163 IEDYCEEEGIPILGKIP 179 (179)
T ss_pred HHHHHHHcCCCeEEeCC
Confidence 5555544 999999 87
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0015 Score=73.53 Aligned_cols=47 Identities=9% Similarity=-0.120 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
...+...+.++|+++.+. .+.+|+++....|.+|||+++++|+++++
T Consensus 308 ~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 308 DKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred HHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 345667888999998543 26799999999999999999999998764
|
|
| >TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0035 Score=69.37 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=68.3
Q ss_pred CChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003466 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (818)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (818)
+..+.+.+.++.+.+. ||+|||-..++.. .....+....+. ||+|+....-++..+...+
T Consensus 189 ~~~~~l~~~l~~l~~~-------------~D~VIID~p~~~~------~~~~~~L~~AD~-vliV~~~~~~sl~~a~r~l 248 (322)
T TIGR03815 189 LPPAAVRAVLDAARRG-------------GDLVVVDLPRRLT------PAAETALESADL-VLVVVPADVRAVAAAARVC 248 (322)
T ss_pred CCHHHHHHHHHHHHhc-------------CCEEEEeCCCCCC------HHHHHHHHHCCE-EEEEcCCcHHHHHHHHHHH
Confidence 3445566666655544 9999999976431 123444444443 7788888877777777777
Q ss_pred HHHHhCCCcEEEEEEccC--CCCCHHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 272 ESLKLRGYDVVAVVFEDH--GLVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~--~~~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
+.++..+.++ .+|+|+. .....+.+++.+ +.|+++ ||+.+..
T Consensus 249 ~~l~~~~~~~-~lVv~~~~~~~~~~~~i~~~l--g~~v~~~Ip~d~~v 293 (322)
T TIGR03815 249 PELGRRNPDL-RLVVRGPAPAGLDPEEIAESL--GLPLLGEVRDQRGL 293 (322)
T ss_pred HHHhhhCCCe-EEEEeCCCCCCCCHHHHHHHh--CCCceeeCCCChhH
Confidence 7777655444 5678876 234567788888 999999 9987653
|
Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0032 Score=70.52 Aligned_cols=46 Identities=13% Similarity=-0.057 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
..+.+.+.++|+.+.+. ...+|+++-...|+||||.++++|++.++
T Consensus 299 ~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 299 KRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred HHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 45667888999966553 26899999999999999999999988654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0091 Score=66.30 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=113.3
Q ss_pred CCcEEE-EEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC--cccCCccchhccc---CCCCcE----EE
Q 003466 617 SGCIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLL---GCVPDI----AC 686 (818)
Q Consensus 617 ~~~iAA-VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG--fGRtG~~~a~e~~---gv~PDi----vt 686 (818)
+.+|.+ +|+.| ++.=|... +++-|..|...|.++++.+|.|||..| |+..+-....+.. ...||- ..
T Consensus 224 ~~kVkGvlitNP--sNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivys 300 (471)
T KOG0256|consen 224 GLKVKGVLITNP--SNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYS 300 (471)
T ss_pred CCceeEEEEeCC--CCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEE
Confidence 456765 55566 56667776 788999999999999999999999986 4333211111211 226773 37
Q ss_pred eccccc-CCccccceeecc-hHHHhhccCChH------------------------HHHH----------HHHHHHHcCC
Q 003466 687 YGKLLT-GGVIPLAATLAT-NAVFDSFVGDSK------------------------LWDL----------ELIQQISSHR 730 (818)
Q Consensus 687 lgKgLg-gGy~PlsAvl~~-~~i~~~l~~~~~------------------------~~~~----------~l~~~l~~~~ 730 (818)
+||=+| -| +-+|++-.. +++..+...-+. ++.+ .+.+.|++.+
T Consensus 301 lSKD~GlpG-fRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lg 379 (471)
T KOG0256|consen 301 LSKDFGLPG-FRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKALG 379 (471)
T ss_pred eccccCCCc-eEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcC
Confidence 999887 45 688877653 455443221110 1110 1223445555
Q ss_pred CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeecC-------CEEEEECCCCChHHHHHHHHHHHH
Q 003466 731 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPLG-------NVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 731 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~g-------~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
+.---++.|++.=+++..--... ..+.-..+++++.++ ++.+.|+. +..|++.. ++.++.++-++++|.
T Consensus 380 I~cl~s~AGlF~wvDlr~lL~s~--tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFA-n~~~~t~~~am~Ri~ 456 (471)
T KOG0256|consen 380 IPCLKSNAGLFCWVDLRKLLTSL--TFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFA-NMSEETLEVAMRRLK 456 (471)
T ss_pred CceeecCCeeEEEEEhHHhcCcC--ChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEec-cCCHHHHHHHHHHHH
Confidence 44445678998888875331111 123334578888888 99999842 56666653 466677777888888
Q ss_pred HHHHH
Q 003466 803 QRLEE 807 (818)
Q Consensus 803 ~~l~~ 807 (818)
..+..
T Consensus 457 ~~~~~ 461 (471)
T KOG0256|consen 457 QFLDS 461 (471)
T ss_pred HHHHh
Confidence 88763
|
|
| >PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00092 Score=81.98 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+.+.+.+..+.++ ||+|||.++-.+.++ ...-++... --+|+|+..+.-...++..+++.+
T Consensus 628 ~~~~~ll~~l~~~-------------yD~IIIDtPP~~~~~-----Da~~la~~a-d~~llVvr~~~t~~~~~~~~~~~l 688 (726)
T PRK09841 628 DRMRQLLEWANDH-------------YDLVIVDTPPMLAVS-----DAAVVGRSV-GTSLLVARFGLNTAKEVSLSMQRL 688 (726)
T ss_pred HHHHHHHHHHHhc-------------CCEEEEeCCCccccc-----hHHHHHHhC-CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4555555555544 999999995422221 123334433 456788888888899999999999
Q ss_pred HhCCCcEEEEEEccCC
Q 003466 275 KLRGYDVVAVVFEDHG 290 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~~ 290 (818)
...+.++.|+|+|++.
T Consensus 689 ~~~~~~~~G~VlN~~~ 704 (726)
T PRK09841 689 EQAGVNIKGAILNGVI 704 (726)
T ss_pred HhCCCceEEEEEeCcc
Confidence 9999999999999983
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0033 Score=71.01 Aligned_cols=208 Identities=18% Similarity=0.167 Sum_probs=122.3
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++-...|+++++++=| .+.++-++||-.|+.+++-..+ +.| ..|+..+..|.|.
T Consensus 60 ~~nPT~~~lE~~~a~LEg---~~~~~afsSGmaAI~~~~l~ll-----~~G----------------D~vl~~~~~YG~t 115 (396)
T COG0626 60 TGNPTRDALEEALAELEG---GEDAFAFSSGMAAISTALLALL-----KAG----------------DHVLLPDDLYGGT 115 (396)
T ss_pred CCCccHHHHHHHHHHhhC---CCcEEEecCcHHHHHHHHHHhc-----CCC----------------CEEEecCCccchH
Confidence 347778899999999876 3688889999999999876551 223 3677777778763
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
-...-.+- +..|+- +.|-|. .+
T Consensus 116 ~~~~~~~l--------------~~~gi~------------------------------~~~~d~-------~~------- 137 (396)
T COG0626 116 YRLFEKIL--------------QKFGVE------------------------------VTFVDP-------GD------- 137 (396)
T ss_pred HHHHHHHH--------------HhcCeE------------------------------EEEECC-------CC-------
Confidence 22111110 000100 111111 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. ++++.+|++|+- .+.---+. + +++|.++|+++|+++|+|+...+ +-+ ++-+.
T Consensus 138 -~~~~~~~~~-------~~~tk~v~lEtP-sNP~l~v~-D---I~~i~~~A~~~g~~vvVDNTfat----P~~--q~PL~ 198 (396)
T COG0626 138 -DEALEAAIK-------EPNTKLVFLETP-SNPLLEVP-D---IPAIARLAKAYGALVVVDNTFAT----PVL--QRPLE 198 (396)
T ss_pred -hHHHHHHhc-------ccCceEEEEeCC-CCcccccc-c---HHHHHHHHHhcCCEEEEECCccc----ccc--cChhh
Confidence 022333342 257899999985 44332222 2 89999999999999999999743 212 22222
Q ss_pred CCCcEEE--ecccccCCc-cccceeec-chHHHhhc--cCCh----H------------------HHH------HHHHHH
Q 003466 680 CVPDIAC--YGKLLTGGV-IPLAATLA-TNAVFDSF--VGDS----K------------------LWD------LELIQQ 725 (818)
Q Consensus 680 v~PDivt--lgKgLggGy-~PlsAvl~-~~~i~~~l--~~~~----~------------------~~~------~~l~~~ 725 (818)
.=.||++ ..|=|+|.- .=.|+|++ ++++.+.+ .... . .++ ..+.+-
T Consensus 199 ~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~ 278 (396)
T COG0626 199 LGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLALRMERHNENALKIAEF 278 (396)
T ss_pred cCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 2368885 678888621 12334554 45555543 1111 0 111 124455
Q ss_pred HHcCCCeeEEE------------------eeeeEEEEEEec
Q 003466 726 ISSHRTVQRVV------------------ALGTLCAIELQA 748 (818)
Q Consensus 726 l~~~~~v~~vr------------------g~Gl~~~iel~~ 748 (818)
|+.+|.|..|. |.|.|+++++..
T Consensus 279 L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~ 319 (396)
T COG0626 279 LADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN 319 (396)
T ss_pred HhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence 67788887764 588999999976
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0037 Score=75.44 Aligned_cols=47 Identities=19% Similarity=0.104 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+..+.+.|.++||.+--. .+.+.|..+...|++++++++++|.+.-+
T Consensus 511 g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 511 AALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 566788899999999764 47788888889999999999998876643
|
|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.001 Score=69.06 Aligned_cols=90 Identities=9% Similarity=0.105 Sum_probs=51.8
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH---hC-CCcEEEEEEccCCCCC-H
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK---LR-GYDVVAVVFEDHGLVN-E 294 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~---~~-~~~v~gvi~N~~~~~~-~ 294 (818)
.||+|||-+.|++.... ....++...--.+|+|+....-++..+-...+.++ .. +.++.|+|+|++.... .
T Consensus 116 ~yD~ilID~~g~~~~~~----~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~ 191 (212)
T cd02117 116 DLDVVLYDVLGDVVCGG----FAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRET 191 (212)
T ss_pred CCCEEEEecCCCceecc----cccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHH
Confidence 49999999965442111 11112222223567788777655544444444443 32 6779999999995432 2
Q ss_pred HHHHHhhcC-CCCEEe-cCCC
Q 003466 295 VPLMSYLRN-RVPVLV-LPPL 313 (818)
Q Consensus 295 ~~l~~~~~~-~~pvlg-iP~~ 313 (818)
+.+++..+. +.|+++ ||+.
T Consensus 192 ~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 192 ELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHcCCCEEEecCCC
Confidence 233333222 899999 9973
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00047 Score=70.65 Aligned_cols=106 Identities=9% Similarity=0.106 Sum_probs=72.4
Q ss_pred CCCChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHH
Q 003466 190 GVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269 (818)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~ 269 (818)
-.+..+.+...++++.+. .+|++||...-|+-. -+..|-..--..|+|+.....++..+--
T Consensus 95 dalt~E~v~~vv~eL~~~------------~fDyIi~DsPAGIE~-------G~~~A~~~Ad~AiVVtnPEvSsVRDsDR 155 (272)
T COG2894 95 DALTPEGVKKVVNELKAM------------DFDYIIIDSPAGIEQ-------GFKNAVYFADEAIVVTNPEVSSVRDSDR 155 (272)
T ss_pred ccCCHHHHHHHHHHHHhc------------CCCEEEecCcchHHH-------HHHhhhhccceEEEEcCCCccccccchh
Confidence 356788888888887743 399999988554433 3445555555678888888777766555
Q ss_pred HHHHHHhCC------C-cEEEEEEccC--------CCCCHHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 270 AYESLKLRG------Y-DVVAVVFEDH--------GLVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 270 ~~~~l~~~~------~-~v~gvi~N~~--------~~~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
-+.+|...+ - .-.-+|+||+ ..-..+.+.+.+ .+|++| ||..++.
T Consensus 156 iiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL--~i~liGiiPed~~V 216 (272)
T COG2894 156 IIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEIL--SIPLIGVIPEDQDV 216 (272)
T ss_pred heeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHh--CCceEEeecCchhh
Confidence 555555433 1 1257899997 233567778888 999999 9987654
|
|
| >PRK11519 tyrosine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0016 Score=79.75 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+.+.+.++.+..+ ||+|||.++ |...-....-+++..+.. |+|+..+.-.......+++.+
T Consensus 623 ~~~~~ll~~l~~~-------------yD~ViiDtp-----P~~~v~Da~~l~~~~d~~-l~Vvr~~~t~~~~~~~~~~~l 683 (719)
T PRK11519 623 ERFAELVNWASKN-------------YDLVLIDTP-----PILAVTDAAIVGRHVGTT-LMVARYAVNTLKEVETSLSRF 683 (719)
T ss_pred HHHHHHHHHHHhc-------------CCEEEEeCC-----CcccchHHHHHHHHCCeE-EEEEeCCCCCHHHHHHHHHHH
Confidence 3455555555544 999999994 322112234466666655 577777777788888899999
Q ss_pred HhCCCcEEEEEEccC
Q 003466 275 KLRGYDVVAVVFEDH 289 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~ 289 (818)
+..+.++.|+|+|++
T Consensus 684 ~~~~~~~~G~VlN~v 698 (719)
T PRK11519 684 EQNGIPVKGVILNSI 698 (719)
T ss_pred HhCCCCeEEEEEeCC
Confidence 999999999999998
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0015 Score=72.59 Aligned_cols=212 Identities=12% Similarity=0.083 Sum_probs=127.6
Q ss_pred CHHHHHHHHHhhhhccccc--CCCCCChhHHHHHHHHHhccCCC--CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccc
Q 003466 418 QIELARDMGYTAARFGHVM--FPENVYEPALECAELLLQGVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~--~~~~~~~~~~eLae~L~~~~~~~--~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~ 493 (818)
..-|.+|+++.+....... ..-+..+....|++++.++.+.. ..+.|+.++.+.+|.-.++-... ..|
T Consensus 46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~-----~~G--- 117 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL-----NPG--- 117 (420)
T ss_pred cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc-----CCC---
Confidence 3447777777776542211 11233556778888888855431 13579999999999988877551 223
Q ss_pred cccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcc
Q 003466 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (818)
Q Consensus 494 ~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~ 573 (818)
..||.++-.|-........+++.+.+... -.. .+. ++.+. |
T Consensus 118 -------------DeVii~eP~fd~Y~~~~~maG~tpv~v~~-----~~~-------------~g~--~~s~~-~----- 158 (420)
T KOG0257|consen 118 -------------DEVIVFEPFFDCYIPQVVMAGGTPVFVPL-----KPK-------------EGN--VSSSD-W----- 158 (420)
T ss_pred -------------CEEEEecCcchhhhhHHhhcCCcceeecc-----ccc-------------ccc--ccCcc-c-----
Confidence 37999999988766555555544433221 000 000 11111 1
Q ss_pred ccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc
Q 003466 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (818)
Q Consensus 574 ~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~ 653 (818)
..| .+.+|..+. ++..+||+-.= ++-.|-+. +.+-|++|.+||++|
T Consensus 159 ------~~D------------------~~~le~~~t--------~kTk~Ii~ntP-hNPtGkvf-sReeLe~ia~l~~k~ 204 (420)
T KOG0257|consen 159 ------TLD------------------PEELESKIT--------EKTKAIILNTP-HNPTGKVF-SREELERIAELCKKH 204 (420)
T ss_pred ------cCC------------------hHHHHhhcc--------CCccEEEEeCC-CCCcCccc-CHHHHHHHHHHHHHC
Confidence 122 155666664 34555555542 67778777 899999999999999
Q ss_pred CCcEEEeecccCcccCCc---cchhc--ccCCCCcEEEecccccC-CccccceeecchHHHhhc
Q 003466 654 KIPVIFDEVFTGFWRLGV---ETTAD--LLGCVPDIACYGKLLTG-GVIPLAATLATNAVFDSF 711 (818)
Q Consensus 654 gilLI~DEV~TGfGRtG~---~~a~e--~~gv~PDivtlgKgLgg-Gy~PlsAvl~~~~i~~~l 711 (818)
|+++|.|||.--+=-.|. .+++. .|..+--+--+||..|- | .-+|-+++.+.++...
T Consensus 205 ~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TG-WrlGW~igp~~L~~~~ 267 (420)
T KOG0257|consen 205 GLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTG-WRLGWAIGPKHLYSAL 267 (420)
T ss_pred CEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeee-eeeeeeechHHhhhhH
Confidence 999999999864433442 22221 11122223468997762 4 6888899988777644
|
|
| >KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0016 Score=69.10 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=65.4
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC----------
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH---------- 289 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~---------- 289 (818)
.-|++||..-=|..+ +..+..+.++.- .-+|+|+....-++..+.-.+.+++..+++|.|+|-|..
T Consensus 156 ~lDyLviDtPPGtsD---ehls~~~~~~~~-~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~ 231 (300)
T KOG3022|consen 156 ELDYLVIDTPPGTSD---EHLSLVQFLRES-DGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHS 231 (300)
T ss_pred CcCEEEEeCCCCCCh---hhhheeeccccc-CceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCc
Confidence 469999998322211 223444444442 126899999988899999999999999999999999974
Q ss_pred ----CCCCHHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 290 ----GLVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 290 ----~~~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
....-+.+.+.+ ++|+|| ||..+.+
T Consensus 232 ~~iF~~gGg~~l~~~~--glp~Lg~iPld~~i 261 (300)
T KOG3022|consen 232 TNIFGSGGGERLAEEL--GLPLLGSLPLDPLI 261 (300)
T ss_pred ceeccCccHHHHHHHc--CCCeEeecCCCHHH
Confidence 122345566666 999999 9987654
|
|
| >PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00035 Score=73.35 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=40.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCC-CCchH
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH-DSDSR 91 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~-~~d~~ 91 (818)
|+.+.|+|. +|+||||++..|++.| + ++|.+|+++|+..++... +.|+.
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L----~-~~G~~V~viK~~~~~~d~~~~Dt~ 50 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNL----K-ERGYRVATAKHTHHEFDKPDTDTY 50 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHH----H-hCCCeEEEEEecccCCCCCCchHH
Confidence 678999999 8999999999999999 4 889999999997775432 24444
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0038 Score=70.08 Aligned_cols=169 Identities=17% Similarity=0.074 Sum_probs=104.3
Q ss_pred CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.+|....|+..++++-+. ..++.++||-.|.-.|+.... +...+||.+...|+|..
T Consensus 75 ~nPt~~~le~~iaal~ga---~~~l~fsSGmaA~~~al~~L~---------------------~~g~~iV~~~~~Y~gT~ 130 (409)
T KOG0053|consen 75 GNPTRDVLESGIAALEGA---AHALLFSSGMAAITVALLHLL---------------------PAGDHIVATGDVYGGTL 130 (409)
T ss_pred CCCchHHHHHHHHHHhCC---ceEEEecccHHHHHHHHHHhc---------------------CCCCcEEEeCCCcccHH
Confidence 467778899999998773 578999999999999998762 22347999999998843
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
.- +.-... ..|. ...|-|++ +
T Consensus 131 ~~-l~~~~~-------------~~gi------------------------------e~~~vd~~----------~----- 151 (409)
T KOG0053|consen 131 RI-LRKFLP-------------KFGG------------------------------EGDFVDVD----------D----- 151 (409)
T ss_pred HH-HHHHHH-------------HhCc------------------------------eeeeechh----------h-----
Confidence 11 110000 0000 00122210 1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
.+.++..++ .++-+|.+|.. .+--.-++. +++++++|+++|+++|+|+.+.+. .-++-+..
T Consensus 152 ~~~~~~~i~--------~~t~~V~~ESP-sNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p------~~~~pL~l 212 (409)
T KOG0053|consen 152 LKKILKAIK--------ENTKAVFLESP-SNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP------YNQDPLPL 212 (409)
T ss_pred HHHHHHhhc--------cCceEEEEECC-CCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc------cccChhhc
Confidence 134444443 37899999986 443333333 899999999999999999998543 12233333
Q ss_pred CCcEEE--ecccccCCccc-cceeecc-hHHHhhc
Q 003466 681 VPDIAC--YGKLLTGGVIP-LAATLAT-NAVFDSF 711 (818)
Q Consensus 681 ~PDivt--lgKgLggGy~P-lsAvl~~-~~i~~~l 711 (818)
-.||++ ..|=++|.-=- .|+++.+ ++....+
T Consensus 213 GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l 247 (409)
T KOG0053|consen 213 GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRL 247 (409)
T ss_pred CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHH
Confidence 479996 56888863212 2335553 5655444
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0042 Score=75.04 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+..+.+.|.++||.+--.+ +.+.|..+...|+++++.++++|.+.-+
T Consensus 517 g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 517 ATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLARFEK 564 (720)
T ss_pred HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 5678888889999997644 7778888889999999999998887644
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0047 Score=70.71 Aligned_cols=190 Identities=14% Similarity=0.051 Sum_probs=109.6
Q ss_pred CCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
+..+....+++.+.+..+.. ..+.+++++++++|...++.... ...| ..|+..+-+|.+
T Consensus 108 G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~----~~pG----------------d~Vli~~P~Y~~ 167 (407)
T PLN02368 108 GLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVI----RGEK----------------DGVLVPVPQYPL 167 (407)
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHc----CCCC----------------CEEEEeCCCCcc
Confidence 34567777888776543311 12589999999999988888651 1222 368888888887
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
....+ ...|.. .+++|-.. -+ .|. -+
T Consensus 168 y~~~~-~~~g~~------------------------------~v~v~~~~-----------~~----~~~--~d------ 193 (407)
T PLN02368 168 YSATI-SLLGGT------------------------------LVPYYLEE-----------SE----NWG--LD------ 193 (407)
T ss_pred HHHHH-HHcCCE------------------------------EEEEeccc-----------cc----CCC--CC------
Confidence 44222 222211 01111000 00 000 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc--cch-
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT- 674 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iA-AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~--~~a- 674 (818)
.+.+++.+.... ....++. .++.-| ++-.|.+. +.+.+++|.++|++||+++|.||++..|--.|. +..
T Consensus 194 --~~~le~~i~~~~--~~~~~~k~l~l~nP--~NPTG~v~-s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~ 266 (407)
T PLN02368 194 --VNNLRQSVAQAR--SKGITVRAMVIINP--GNPTGQCL-SEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISA 266 (407)
T ss_pred --HHHHHHHHHHHh--hcCCCeEEEEEECC--CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccH
Confidence 145666654210 0112455 566677 67788766 899999999999999999999999977632232 211
Q ss_pred hccc-CCC------CcEE---Eeccccc--CCccccceee---cchHHHhhc
Q 003466 675 ADLL-GCV------PDIA---CYGKLLT--GGVIPLAATL---ATNAVFDSF 711 (818)
Q Consensus 675 ~e~~-gv~------PDiv---tlgKgLg--gGy~PlsAvl---~~~~i~~~l 711 (818)
.+.. ++. +.++ +|||++. -| +-+|.++ +++++++.+
T Consensus 267 ~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~G-lRiGy~i~~~~~~~li~~~ 317 (407)
T PLN02368 267 KKVLMDMGPPISKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVEEI 317 (407)
T ss_pred HHHHhhhcccccccceEEEEecCCcccccCCc-cceEEEEEeCCCHHHHHHH
Confidence 1110 111 2333 6799984 56 6888888 477766644
|
|
| >PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0021 Score=69.05 Aligned_cols=90 Identities=11% Similarity=0.074 Sum_probs=53.2
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCCHH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~N~~~~~~~~ 295 (818)
+||+|||-+.|++.+.. ....+...+ -||+|+....-++..+...++.++ ..++++.|+|+|+... ..
T Consensus 117 ~yD~viIDt~g~~~~~~-----~~~~l~~AD-~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~--~~ 188 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-----FAAPLQYAD-YALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG--TD 188 (270)
T ss_pred cCCEEEEecCCCcccCc-----ccchhhhCc-EEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh--HH
Confidence 49999999965443221 001111111 267777777666666555555544 3456789999999742 22
Q ss_pred HHHHhhcC-CCCEEe-cCCCCCCC
Q 003466 296 PLMSYLRN-RVPVLV-LPPLPQDS 317 (818)
Q Consensus 296 ~l~~~~~~-~~pvlg-iP~~~~~~ 317 (818)
.+++..+. +.++++ ||......
T Consensus 189 ~~~~~~~~~g~~vl~~Ip~~~~i~ 212 (270)
T PRK13185 189 LIDKFNEAVGLKVLAHVPDLDAIR 212 (270)
T ss_pred HHHHHHHHcCCCEEEECCCCcccC
Confidence 33333322 889999 98775543
|
|
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00093 Score=71.49 Aligned_cols=64 Identities=28% Similarity=0.137 Sum_probs=48.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---CHHH-----------HHHhhcC--CCCEEecCCCCC
Q 003466 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---NEVP-----------LMSYLRN--RVPVLVLPPLPQ 315 (818)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~---~~~~-----------l~~~~~~--~~pvlgiP~~~~ 315 (818)
-+++|+....-++..+..+++.++..|+++.|+|+|++... ...+ |++.-.. +.|++-||+.+.
T Consensus 162 ~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~~ 241 (254)
T cd00550 162 SFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLPE 241 (254)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCCC
Confidence 48999999999999999999999999999999999998321 1122 2221111 788888998765
|
This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0043 Score=74.90 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+..+.+.|.++||.+--. .+.+.|..+...|+++++.++++|.+.-+
T Consensus 511 g~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 511 ASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 556788899999999764 47788888889999999999998876533
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0079 Score=75.41 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
+.++.++|.++||+++.. ++.++++|.-+.|++|||.++++|.
T Consensus 394 ~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 394 AAAVLARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred HHHHHHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 567899999999999765 5789999999999999999999997
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.012 Score=67.65 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=30.7
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
....++++|. +|+||||+++.|++.|. ++|++|...-
T Consensus 94 ~p~vI~lvG~-~GsGKTTtaakLA~~L~-----~~g~kV~lV~ 130 (437)
T PRK00771 94 KPQTIMLVGL-QGSGKTTTAAKLARYFK-----KKGLKVGLVA 130 (437)
T ss_pred CCeEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 3457889997 99999999999999994 6788887764
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00083 Score=76.36 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=97.1
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEEeCChhHH-HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTA-IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA-~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
..+..+..+.+++.+| .++.+|..+||.. |.+++..+ .++.+.|.++...|-+.
T Consensus 65 ~G~I~eAe~~aA~~fG---Ad~t~flvnGsT~g~~a~i~a~----------------------~~~gd~VLv~RN~HkSv 119 (417)
T PF01276_consen 65 EGIIKEAEELAARAFG---ADKTFFLVNGSTSGNQAMIMAL----------------------CRPGDKVLVDRNCHKSV 119 (417)
T ss_dssp BTHHHHHHHHHHHHHT---ESEEEEESSHHHHHHHHHHHHH----------------------TTTTCEEEEETT--HHH
T ss_pred ccHHHHHHHHHHHhcC---CCeEEEEecCchHHHHHHHHHh----------------------cCCCCEEEEcCCcHHHH
Confidence 4466777777888888 4788888777665 45555444 22346788899999999
Q ss_pred cccccccCCC-CCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 521 LGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 521 ~~als~tg~~-~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
+.++-++|.. .|-.+ -....|.. .+++ -. .+.
T Consensus 120 ~~alil~ga~Pvyi~p----~~~~~gi~--------------~~i~--------------~~-------------~~~-- 152 (417)
T PF01276_consen 120 YNALILSGAIPVYIPP----EDNEYGII--------------GGIS--------------PD-------------EFN-- 152 (417)
T ss_dssp HHHHHHHTEEEEEEEE----EE-TTS-B--------------EEB---------------GG-------------GGS--
T ss_pred HHHHHHcCCeEEEecC----CccccCCc--------------cCCC--------------hh-------------hhh--
Confidence 9999998743 12111 00000000 0000 00 000
Q ss_pred HHHHHHHHHhcCCCCCCCCcEE---EEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhc
Q 003466 600 YSSYISQNLLQNPGLKVSGCIG---ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iA---AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
.+.+++.|++ +++.-+ +||+-|-+ -|+... +++|.++|+++|++|++||+|.+.-+...+ -..
T Consensus 153 -~~~i~~~l~~-----~p~~k~~~~vvlt~PTY---~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~l-p~~ 218 (417)
T PF01276_consen 153 -EEDIEEALKE-----HPDAKAPRLVVLTSPTY---YGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFHPL-PRS 218 (417)
T ss_dssp -HHHHHHHHHH-----CTTCHCESEEEEESS-T---TSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCSGG-GTT
T ss_pred -HHHHHHHHHh-----CccccCceEEEEeCCCC---CeEEEC----HHHHHHHhcccCCEEEEEccccccccCCCC-ccc
Confidence 1567777874 344334 78888864 456665 999999999999999999999654333322 223
Q ss_pred ccCCCCc-------EEEec--ccccC
Q 003466 677 LLGCVPD-------IACYG--KLLTG 693 (818)
Q Consensus 677 ~~gv~PD-------ivtlg--KgLgg 693 (818)
.+..-.| ++|-| |.|++
T Consensus 219 a~~~gad~~~~~~~~vvqS~HKtL~a 244 (417)
T PF01276_consen 219 ALALGADRPNDPGIIVVQSTHKTLPA 244 (417)
T ss_dssp CSSTTSS-CTSBEEEEEEEHHHHSSS
T ss_pred hhhccCccccccceeeeechhhcccc
Confidence 3455667 77655 66665
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0047 Score=66.15 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=31.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|+.|-|.| -.||||||+|..|+.+|. ++|++|...=
T Consensus 1 m~~iav~~-KGGvGKTT~~~nLA~~La-----~~G~kVlliD 36 (270)
T cd02040 1 MRQIAIYG-KGGIGKSTTTQNLSAALA-----EMGKKVMIVG 36 (270)
T ss_pred CcEEEEEe-CCcCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 67888886 899999999999999994 7899998765
|
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0058 Score=66.13 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.7
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.++.++++| -+|+||||+++-|+..+. ++|.+|...-
T Consensus 71 ~~~vi~l~G-~~G~GKTTt~akLA~~l~-----~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVG-VNGVGKTTTIAKLANKLK-----KQGKSVLLAA 107 (272)
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCEEEEEe
Confidence 356788888 599999999999999994 7788887764
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0038 Score=67.37 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH---hCCCcEEEEEEccCCCCC-H-
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK---LRGYDVVAVVFEDHGLVN-E- 294 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~---~~~~~v~gvi~N~~~~~~-~- 294 (818)
.||+|||-..|++... .....++...---+|+|+....-++..+-..++.++ ..+.++.|+|+|+..... .
T Consensus 116 ~yD~vlID~~~~~~~~----~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~ 191 (273)
T PRK13232 116 DLDYVFYDVLGDVVCG----GFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVDGERE 191 (273)
T ss_pred cCCEEEEecCCCeeEC----CEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHH
Confidence 3999999996543211 011111111112577888877666655444444444 346889999999863222 2
Q ss_pred --HHHHHhhcCCCCEEe-cCCCCCC
Q 003466 295 --VPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 295 --~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
+.+++.+ +.++++ ||.....
T Consensus 192 ~~e~l~~~~--~~~vl~~Ip~~~~v 214 (273)
T PRK13232 192 LLEAFAKKL--GSQLIHFVPRDNIV 214 (273)
T ss_pred HHHHHHHHh--CCCeEEECCCCHHH
Confidence 3344444 788899 8876543
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.019 Score=64.47 Aligned_cols=44 Identities=16% Similarity=-0.099 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
..+...+.++|+.+.+. .+.+|+++..-.|++|||+++++|++.
T Consensus 307 ~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 307 KEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred HHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 34546788899985443 267999999889999999999988874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.015 Score=66.77 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=48.4
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchh---hHhhhC-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---
Q 003466 220 MEILCIVETAGGVASPGPSGSLQC---DLYRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--- 292 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~---dla~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~--- 292 (818)
.+|+|||.+||-+.. ++...- .+++.. -..++||++...| ..++...+.+. +.+++.|+|+|+.+.+
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~-~~~~i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFN-EALGLTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHH-hhCCCCEEEEeCccCcccc
Confidence 489999999995432 111121 222222 2357999997543 33333334443 2578899999998422
Q ss_pred -CHHHHHHhhcCCCCEEec
Q 003466 293 -NEVPLMSYLRNRVPVLVL 310 (818)
Q Consensus 293 -~~~~l~~~~~~~~pvlgi 310 (818)
..-.+...+ ++|+..+
T Consensus 257 G~alsi~~~~--~~PI~fi 273 (433)
T PRK10867 257 GAALSIRAVT--GKPIKFI 273 (433)
T ss_pred cHHHHHHHHH--CcCEEEE
Confidence 233445555 8998663
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.012 Score=67.45 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=47.7
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhH---hhhC-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC----
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDL---YRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL---- 291 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dl---a~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~---- 291 (818)
.+|+|||.++|-... +.....++ .+.+ -..++||++...| ..++.....+. ..+.+.|+|+|+...
T Consensus 182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI---DEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCcccc---CHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccCcccc
Confidence 489999999995431 11122222 2222 2347999997644 23333333333 346789999999842
Q ss_pred CCHHHHHHhhcCCCCEEec
Q 003466 292 VNEVPLMSYLRNRVPVLVL 310 (818)
Q Consensus 292 ~~~~~l~~~~~~~~pvlgi 310 (818)
.....+...+ ++|+.-+
T Consensus 256 G~~lsi~~~~--~~PI~fi 272 (428)
T TIGR00959 256 GAALSVRSVT--GKPIKFI 272 (428)
T ss_pred cHHHHHHHHH--CcCEEEE
Confidence 2233444555 8998663
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0061 Score=65.50 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=72.5
Q ss_pred CCChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHH
Q 003466 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISA 270 (818)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~ 270 (818)
.+..++..+.++++... +|++|+-...|+.-+. ....... --+|+|+....-++..+..+
T Consensus 96 ~~~~~~~~~~~~~l~~~-------------~D~iliD~~aGl~~~~------~~~~~~s-d~~viVt~pe~~si~~A~~~ 155 (262)
T COG0455 96 KLDPEDLEDVIKELEEL-------------YDYILIDTGAGLSRDT------LSFILSS-DELVIVTTPEPTSITDAYKT 155 (262)
T ss_pred hcCHHHHHHHHHHHHhc-------------CCEEEEeCCCCccHHH------HHHHHhc-CcEEEEeCCCcchHHHHHHH
Confidence 45667777777777765 7999999866654332 2222222 55788899999999999999
Q ss_pred HHHHHhCCCcEEE--EEEccCC--CCCHHH---HHHhhcCCCCEEe-cCCCC
Q 003466 271 YESLKLRGYDVVA--VVFEDHG--LVNEVP---LMSYLRNRVPVLV-LPPLP 314 (818)
Q Consensus 271 ~~~l~~~~~~v~g--vi~N~~~--~~~~~~---l~~~~~~~~pvlg-iP~~~ 314 (818)
++.+...+....+ +|+|++. .+..+. +.+... .+|.+. +|+++
T Consensus 156 i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~-~~~~~~~i~~~~ 206 (262)
T COG0455 156 IKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVK-QVPVLQVIPFDP 206 (262)
T ss_pred HHHHHHcCCccccceEEEEecccccchhHHHHHHHHHHH-hCCceeEeccCh
Confidence 9999999999888 9999993 232222 222222 566777 89888
|
|
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0049 Score=66.16 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=52.2
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCC-CH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLV-NE 294 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~-~~ 294 (818)
.||+|||-+.|++..+... . .....+. +|+|+....-++..+...++.++. .++++.|||+|++... ..
T Consensus 115 ~yD~ViID~~~~~~~~~~~---~--~l~aAD~-vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~~~~ 188 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGFA---T--PLQYADY-ALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDATDLI 188 (268)
T ss_pred cCCEEEEecCCccccCccc---c--chhhcCE-EEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChHHHH
Confidence 4999999997765443211 0 1112222 556666665566655555554442 4578899999998432 22
Q ss_pred HHHHHhhcCCCCEEe-cCCCCC
Q 003466 295 VPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 295 ~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
+.+.+.+ +.|+++ ||....
T Consensus 189 ~~~~~~~--~~~vl~~I~~~~~ 208 (268)
T TIGR01281 189 ERFNERV--GMPVLGVVPDLEV 208 (268)
T ss_pred HHHHHHc--CCCEEEEcCCChH
Confidence 2233334 899999 887654
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0062 Score=66.49 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=52.1
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCC-CCCH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHG-LVNE 294 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~-~~~~ 294 (818)
.||++||-+.|++..+. . +......+ -||+|+....-++..+-..++.++. .++++.|+|+|++. ....
T Consensus 115 ~yD~IiIDt~~~l~~~a----~-~aal~~AD-~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVVCGG----F-AAPLNYAD-YCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLI 188 (290)
T ss_pred cCCEEEEecCCcceech----h-hhhhhcCC-EEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHH
Confidence 49999999966533221 0 01111111 2667777775565555555544442 35778999999984 2223
Q ss_pred HHHHHhhcCCCCEEe-cCCCCCC
Q 003466 295 VPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 295 ~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
+.+.+.+ +.|+++ ||+....
T Consensus 189 ~~~~~~~--~~~vl~~Ip~~~~v 209 (290)
T CHL00072 189 DKYVEAC--PMPVLEVLPLIEDI 209 (290)
T ss_pred HHHHHHc--CCceEEECCCChHH
Confidence 3333444 889999 9976543
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0071 Score=64.96 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCCHH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~N~~~~~~~~ 295 (818)
+||+|||-+.|++..+. ....+...+ -||+|+....-++..+...++.++ ..++++.|+|+|++.. ..
T Consensus 115 ~yD~vIIDt~g~~~~~~-----~~~al~~aD-~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~--~~ 186 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-----FAAPLNYAD-YALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK--TD 186 (267)
T ss_pred cCCEEEEeCCCCccccc-----chhhhhhcC-EEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH--HH
Confidence 49999999976554331 111122222 255566666555555444444433 3467889999999842 12
Q ss_pred HHHHhhcC-CCCEEe-cCCCCCCC
Q 003466 296 PLMSYLRN-RVPVLV-LPPLPQDS 317 (818)
Q Consensus 296 ~l~~~~~~-~~pvlg-iP~~~~~~ 317 (818)
.+++..+. +.|+++ ||+.+...
T Consensus 187 ~i~~~~~~~~~~vl~~Ip~~~~v~ 210 (267)
T cd02032 187 LIDKFVEAVGMPVLAVLPLIEDIR 210 (267)
T ss_pred HHHHHHHhCCCCEEEEecCCcccc
Confidence 23332222 899999 99876654
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0067 Score=63.25 Aligned_cols=63 Identities=24% Similarity=0.079 Sum_probs=47.7
Q ss_pred CCEEEEeCCCCCCCcCCCCCchhhHhhhCCC----CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003466 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRL----PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (818)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~dla~~l~~----pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (818)
||+|||.+. |. .....+-+...+.. -+|+|+.....++.++...++.++..+.++.|+|+|++
T Consensus 114 yD~IIiD~p-----p~-~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~ 180 (217)
T cd02035 114 YDVIVFDTA-----PT-GHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRV 180 (217)
T ss_pred CCEEEECCC-----Cc-hHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 999999983 22 11111112233322 48999999999999999999999999999999999986
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.018 Score=61.70 Aligned_cols=178 Identities=16% Similarity=0.157 Sum_probs=107.2
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE-E--ecc-ccc
Q 003466 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA-C--YGK-LLT 692 (818)
Q Consensus 617 ~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv-t--lgK-gLg 692 (818)
.+.+++|++-=- -...|.+. ..+-+.+|.+|++.||++||+|.+. |.---|--|.-...--.+.|+ | +|| ||-
T Consensus 177 ~e~~g~ic~SRP-tNPTGNVl-TdeE~~kldalA~~~giPliIDnAY-g~PFP~iifsd~~~~w~~NiilC~SLSK~GLP 253 (417)
T COG3977 177 GESTGAICVSRP-TNPTGNVL-TDEELAKLDALARQHGIPLIIDNAY-GVPFPGIIFSDATPLWNENIILCMSLSKLGLP 253 (417)
T ss_pred ccccceEEecCC-CCCCCCcc-cHHHHHHHHHHhhhcCCcEEEeccc-CCCCCceecccccccCCCCEEEEeehhhcCCC
Confidence 467888887632 35556655 6788999999999999999999988 442222222211111134544 4 455 444
Q ss_pred CCccccceeecchHHHhhccCChH------------------------HHH---------HHH---HHHHH-cCCC--ee
Q 003466 693 GGVIPLAATLATNAVFDSFVGDSK------------------------LWD---------LEL---IQQIS-SHRT--VQ 733 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~~------------------------~~~---------~~l---~~~l~-~~~~--v~ 733 (818)
| .-+|.++++++++..+.+-.. .+. ++. .+.++ ..|. -.
T Consensus 254 G--~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~ 331 (417)
T COG3977 254 G--SRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCL 331 (417)
T ss_pred C--cceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcccee
Confidence 4 467789999999886643211 010 110 11121 1221 11
Q ss_pred EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--------------CCEEEEECCCCChHHHHHHHHH
Q 003466 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------GNVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 734 ~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------------g~~ir~~ppl~~t~edId~~~~ 799 (818)
--++.|.++.+-.-++- ......+.++|+.+|+++.|+ +..+|+ .++-+++.|+..+.
T Consensus 332 iHkpEGAIFlWLWf~dL------PItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rm--n~~~~~~~ie~Gva 403 (417)
T COG3977 332 IHKPEGAIFLWLWFKDL------PITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRM--NYVPEPEKIEKGVA 403 (417)
T ss_pred eecCCcceeehhhhccC------CCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEE--ecCCCHHHHHHHHH
Confidence 23567776665443331 023667899999999999872 245554 45567889999999
Q ss_pred HHHHHHHH
Q 003466 800 KLYQRLEE 807 (818)
Q Consensus 800 ~l~~~l~~ 807 (818)
+|.+.+++
T Consensus 404 ~lae~ve~ 411 (417)
T COG3977 404 ILAEEVER 411 (417)
T ss_pred HHHHHHHH
Confidence 98877654
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.043 Score=62.88 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=29.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..++++|. +|+||||+++.|+.+|. ++|.+|...-
T Consensus 101 ~vi~lvG~-~GvGKTTtaaKLA~~l~-----~~G~kV~lV~ 135 (429)
T TIGR01425 101 NVIMFVGL-QGSGKTTTCTKLAYYYQ-----RKGFKPCLVC 135 (429)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEc
Confidence 46888996 99999999999999994 6788877664
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.056 Score=60.18 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcc-cCCCCcEE--EecccccCCccccce-eecch-HHHhhcc
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADL-LGCVPDIA--CYGKLLTGGVIPLAA-TLATN-AVFDSFV 712 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~-~gv~PDiv--tlgKgLggGy~PlsA-vl~~~-~i~~~l~ 712 (818)
-+--++++|++|++-|+.|.+|=+|- |+ .-| +.++. .. ..|++ |.=|.|-| |-|+ +++++ ++.+.+.
T Consensus 179 r~id~~~~reIad~VGA~L~~DmAHiaGL-VA~--G~~p~P~~-~AdvVTtTTHKTlrG---PrGG~Il~~~eel~kkin 251 (413)
T COG0112 179 RPIDFKRFREIADEVGAYLMVDMAHVAGL-IAG--GVHPNPLP-HADVVTTTTHKTLRG---PRGGIILTNDEELAKKIN 251 (413)
T ss_pred cccCHHHHHHHHHHhCceEEehHHHHHHH-Hhc--ccCCCCCC-ccceEeCCcccCCCC---CCceEEEeccHHHHHHhh
Confidence 33348999999999999999998874 33 111 11111 11 25787 56788876 3333 56663 7766554
Q ss_pred CCh-------H---------------------HHH-------HHHHHHHHcCCCeeEEEeee---eEEEEEEecCcccCC
Q 003466 713 GDS-------K---------------------LWD-------LELIQQISSHRTVQRVVALG---TLCAIELQAAGCNAG 754 (818)
Q Consensus 713 ~~~-------~---------------------~~~-------~~l~~~l~~~~~v~~vrg~G---l~~~iel~~~~~~~~ 754 (818)
..- . .+. +.+.+.+...+. . +-.-| .++.+++.+..
T Consensus 252 ~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~-~-vvsGgTdnHl~lVDl~~~~---- 325 (413)
T COG0112 252 SAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGF-K-VVSGGTDNHLVLVDLRSKG---- 325 (413)
T ss_pred hhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCC-e-EecCCccceEEEEEcccCC----
Confidence 311 1 000 123344444332 1 11122 25556665221
Q ss_pred CchHHHHHHHHHHHhCCceEee-----------cCCEEEEECCCC----ChHHHHHHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLREDGVYMRP-----------LGNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~Gvlv~p-----------~g~~ir~~ppl~----~t~edId~~~~~l~~~l~~l~ 809 (818)
.........|-+-||.+.- ...-||+-.|.. +.++|++++.+.|.+++...+
T Consensus 326 ---~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~~ 392 (413)
T COG0112 326 ---LTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGLK 392 (413)
T ss_pred ---CCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhccc
Confidence 1244455666677998862 124578877765 458899999999999998744
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0076 Score=58.31 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=54.4
Q ss_pred CCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhC-CCcEEEEEEccCCCC-CHHHHH
Q 003466 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR-GYDVVAVVFEDHGLV-NEVPLM 298 (818)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~-~~~v~gvi~N~~~~~-~~~~l~ 298 (818)
+|++||.+.+++ +.....+++..+. +|+|+....-++..+...++.+... +..-.++|+|++... ..+.+.
T Consensus 45 yd~VIiD~p~~~------~~~~~~~l~~aD~-vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGI------SDNVLDFFLAADE-VIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVF 117 (139)
T ss_pred CCEEEEECCCCC------CHHHHHHHHhCCe-EEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHHHHHH
Confidence 578999996543 2233456666664 7788888888888877777777643 345678999998432 222222
Q ss_pred Hh--------hcCCCCEEe-cC
Q 003466 299 SY--------LRNRVPVLV-LP 311 (818)
Q Consensus 299 ~~--------~~~~~pvlg-iP 311 (818)
+. ...++|++| ||
T Consensus 118 ~~~~~~~~r~~~~~l~~~~~~~ 139 (139)
T cd02038 118 KRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHHHHHHHHHhCCChhhceecC
Confidence 22 222789998 87
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.05 Score=63.91 Aligned_cols=67 Identities=12% Similarity=-0.057 Sum_probs=41.4
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccC
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG 693 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLgg 693 (818)
.+...||+...... ...+ +++++++|+++|++|++|-+|+ .|-........-+. ..|++| .-|.|.|
T Consensus 297 ~rPKLII~g~Sayp---r~~D----~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP~~-~aDvvt~TTHKtLrG 365 (586)
T PLN02271 297 FRPKILICGGSSYP---REWD----YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNPFD-YCDIVTSTTHKSLRG 365 (586)
T ss_pred cCCeEEEECchhcc---CcCC----HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCCCc-CCcEEEeCCcccCCC
Confidence 45667777653111 2222 8899999999999999999996 33332211001111 368875 5699876
|
|
| >PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0032 Score=71.48 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=34.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
|+.|-|+|. +|+||||++..|+..| + ++|++|+..|=
T Consensus 1 MkVi~IvG~-sgSGKTTLiekLI~~L----~-~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGW-KDAGKTGLVERLVAAI----A-ARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEec-CCCCHHHHHHHHHHHH----H-hCCCeEEEEec
Confidence 678999998 6999999999999999 4 89999999994
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.034 Score=60.04 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=31.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..|=|||+ .|+||||+.-+|.+-|. ++|.+|+..-
T Consensus 52 ~viGITG~-PGaGKSTli~~L~~~l~-----~~G~rVaVlA 86 (323)
T COG1703 52 HVIGITGV-PGAGKSTLIEALGRELR-----ERGHRVAVLA 86 (323)
T ss_pred cEEEecCC-CCCchHHHHHHHHHHHH-----HCCcEEEEEE
Confidence 46889998 89999999999999994 8999998775
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.017 Score=64.32 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=29.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
...++++| -+|+||||+++.|+..|. ++|.+|+..-
T Consensus 140 ~~vi~~~G-~~GvGKTTtiakLA~~l~-----~~g~~V~li~ 175 (336)
T PRK14974 140 PVVIVFVG-VNGTGKTTTIAKLAYYLK-----KNGFSVVIAA 175 (336)
T ss_pred CeEEEEEc-CCCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 45688899 599999999999999994 6787877743
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.024 Score=64.00 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.++|.|. +|+||||+.+.|+..|. .+|++|+..-
T Consensus 241 ~~vI~LVGp-tGvGKTTTiaKLA~~L~-----~~GkkVglI~ 276 (436)
T PRK11889 241 VQTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 276 (436)
T ss_pred CcEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 357899999 99999999999999984 7788888765
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.03 Score=62.02 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
...+.+.| -+|+||||++..|+..+. .+|.+|...-
T Consensus 114 ~~vi~lvG-pnGsGKTTt~~kLA~~l~-----~~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVG-VNGVGKTTTIGKLAHKYK-----AQGKKVLLAA 149 (318)
T ss_pred CeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 35688999 589999999999999994 6788887654
|
|
| >cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0068 Score=63.64 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCc--CCCCCchhhHhhhCCCC-EEEEE-------c-CCCC
Q 003466 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASP--GPSGSLQCDLYRPFRLP-GILVG-------D-GRLG 262 (818)
Q Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p--~~~~~~~~dla~~l~~p-vilV~-------~-~~~g 262 (818)
-++|.+++.+..+. ...|++|||=-|-+.+. ++.-...-++...++.. +++|- . .+.-
T Consensus 117 t~eIk~~i~~~~~~-----------~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~gE~ 185 (255)
T cd03113 117 TDEIKERIRRVAEK-----------SGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAGEL 185 (255)
T ss_pred cHHHHHHHHHhhcc-----------CCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCcc
Confidence 35667777766542 34899999986644432 11112333444444432 22221 1 1111
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEEccC---CCCCHHHHHHhhcCCCCEEe-cCCCC
Q 003466 263 GISGTISAYESLKLRGYDVVAVVFEDH---GLVNEVPLMSYLRNRVPVLV-LPPLP 314 (818)
Q Consensus 263 ~i~~~~~~~~~l~~~~~~v~gvi~N~~---~~~~~~~l~~~~~~~~pvlg-iP~~~ 314 (818)
----+-++++.|+++|+.+.+||+|.- ...+.+.|...+ ++|+.+ +|..+
T Consensus 186 KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFc--nVpve~VI~~~d 239 (255)
T cd03113 186 KTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFC--DVPPEAVISAPD 239 (255)
T ss_pred ccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhc--CCCHHHeeecCC
Confidence 234456789999999999999999985 345667777777 999998 66544
|
The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain. |
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.031 Score=57.32 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=31.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+.|-|++.-.||||||++..|..+|. ++|++|...-
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la-----~~g~~vlliD 36 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLH-----ADGHKVLLVD 36 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 35789999999999999999999994 7898887665
|
|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.011 Score=73.08 Aligned_cols=64 Identities=9% Similarity=-0.086 Sum_probs=46.5
Q ss_pred CCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003466 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (818)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (818)
||+|||.+...+.+. ...-++...+. ||+|+..+.-.......+++.++..+.++.|||+|++.
T Consensus 656 yD~IiID~pp~~~~~-----d~~~l~~~~D~-vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~ 719 (754)
T TIGR01005 656 SDCVVVDVGTADPVR-----DMRAAARLAII-MLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLD 719 (754)
T ss_pred CCEEEEcCCCcchhH-----HHHHhhhhCCe-EEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCC
Confidence 999999995533221 22233433333 56888877778888888999999888899999999983
|
The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. |
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.014 Score=61.52 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=33.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|+.|.|++.-.|+||||++..|+.+|. ++|++|...=
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la-----~~g~~VlliD 37 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALK-----LLGEPVLAID 37 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 678999999999999999999999994 7899988775
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.041 Score=59.12 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=33.7
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|++.|-|++.-.||||||+++.|..+|. ++|++|...=
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la-----~~g~~vllvD 38 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLA-----QKGKKTVVID 38 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 4688999999999999999999999994 7788887765
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.079 Score=59.96 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCch---hhHhhhCC-CCEEEEEcCCCChHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQ---CDLYRPFR-LPGILVGDGRLGGISGTISA 270 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~---~dla~~l~-~pvilV~~~~~g~i~~~~~~ 270 (818)
+...+.+++.... .+|++||.+||=+.. +..++ .+|.+.++ ..++||+|.-.|- .+...
T Consensus 169 ~Iak~al~~ak~~------------~~DvvIvDTAGRl~i---de~Lm~El~~Ik~~~~P~E~llVvDam~GQ--dA~~~ 231 (451)
T COG0541 169 EIAKAALEKAKEE------------GYDVVIVDTAGRLHI---DEELMDELKEIKEVINPDETLLVVDAMIGQ--DAVNT 231 (451)
T ss_pred HHHHHHHHHHHHc------------CCCEEEEeCCCcccc---cHHHHHHHHHHHhhcCCCeEEEEEecccch--HHHHH
Confidence 3445666665544 389999999994443 22233 33444443 2389999976552 22222
Q ss_pred HHHHHhCCCcEEEEEEccCCCC----CHHHHHHhhcCCCCEE--ec----CCCCCCCcchhhhhhhhhhhhHHHHHHHHH
Q 003466 271 YESLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRNRVPVL--VL----PPLPQDSSNDLMEWFDESHNVFDSLKNIML 340 (818)
Q Consensus 271 ~~~l~~~~~~v~gvi~N~~~~~----~~~~l~~~~~~~~pvl--gi----P~~~~~~~~~~~~~l~~~~~~l~~l~~~l~ 340 (818)
.+.+. +.+.|.|||+.+.+.+ ..--++..+ +.|+- |. ..++......++.-+-- .+.+.+|.+-..
T Consensus 232 A~aF~-e~l~itGvIlTKlDGdaRGGaALS~~~~t--g~PIkFiGtGEki~dLE~F~P~R~asRILG-MGDv~sLvEk~~ 307 (451)
T COG0541 232 AKAFN-EALGITGVILTKLDGDARGGAALSARAIT--GKPIKFIGTGEKIDDLEPFHPDRFASRILG-MGDVLSLIEKAE 307 (451)
T ss_pred HHHHh-hhcCCceEEEEcccCCCcchHHHhhHHHH--CCCeEEEecCCCcccCCCcChHHHHHHhcC-cccHHHHHHHHH
Confidence 23333 4488999999998322 233355666 77763 43 33344433344333311 245666665555
Q ss_pred HHH
Q 003466 341 LAY 343 (818)
Q Consensus 341 ~~~ 343 (818)
...
T Consensus 308 ~~~ 310 (451)
T COG0541 308 EVV 310 (451)
T ss_pred Hhh
Confidence 443
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.068 Score=67.21 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
..+.++|.++||.++.. ++.+++++....|++|||.++++|..
T Consensus 422 ~~v~~~L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 422 DAIADAAAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred HHHHHHHHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 56889999999999865 57899999999999999999999963
|
|
| >TIGR01287 nifH nitrogenase iron protein | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.02 Score=61.69 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=29.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|.|.| -.||||||+|..|..+|. ++|++|..+=
T Consensus 2 ~ia~~g-KGGVGKTT~a~nLA~~La-----~~G~~VlliD 35 (275)
T TIGR01287 2 QIAIYG-KGGIGKSTTTQNIAAALA-----EMGKKVMIVG 35 (275)
T ss_pred eeEEeC-CCcCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 577888 899999999999999994 7899988764
|
This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.037 Score=64.61 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=36.7
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 14 RRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
++.++..+.....- .+.+....-..+.|+|. +|+||||++..|+..+.. + ..+.+|.++-
T Consensus 328 ~~~l~~~L~~~l~v-~~~~~l~~G~vIaLVGP-tGvGKTTtaakLAa~la~--~-~~gkkVaLId 387 (559)
T PRK12727 328 RGLMLGLLSKRLPV-APVDPLERGGVIALVGP-TGAGKTTTIAKLAQRFAA--Q-HAPRDVALVT 387 (559)
T ss_pred HHHHHHHHHHhcCc-CccccccCCCEEEEECC-CCCCHHHHHHHHHHHHHH--h-cCCCceEEEe
Confidence 44555555444321 22222233567888897 699999999999988741 1 1256777664
|
|
| >PRK13230 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.017 Score=62.53 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=32.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|++|.|.| -.||||||+|..|..+|. ++|++|..+=
T Consensus 1 ~~~i~~~g-KGGVGKTT~a~nLA~~La-----~~G~rVLliD 36 (279)
T PRK13230 1 MRKFCFYG-KGGIGKSTTVCNIAAALA-----ESGKKVLVVG 36 (279)
T ss_pred CcEEEEEC-CCCCcHHHHHHHHHHHHH-----hCCCEEEEEe
Confidence 77899998 899999999999999994 8899988764
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.022 Score=65.45 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+++.|. +||||||+++.|+..+.+ . +.|.+|+++.
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~--~-~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYAL--L-YGKKKVALIT 258 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHH--h-cCCCeEEEEE
Confidence 457888898 899999999999988720 1 4578898886
|
|
| >TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0029 Score=62.68 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=32.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccC
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g 83 (818)
+.|+|. +|+|||+++..|++.| + ++|++|+++|+...+
T Consensus 2 i~i~G~-~gsGKTtl~~~l~~~l----~-~~G~~V~viK~~~~~ 39 (155)
T TIGR00176 2 LQIVGP-KNSGKTTLIERLVKAL----K-ARGYRVATIKHDHHD 39 (155)
T ss_pred EEEECC-CCCCHHHHHHHHHHHH----H-hcCCeEEEEeccccc
Confidence 567887 6999999999999999 4 789999999986544
|
This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.041 Score=54.95 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+.++|. +|+|||+++..|+..+. ++|.+|.++-
T Consensus 3 ~~~~G~-~G~GKTt~~~~la~~~~-----~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGL-QGVGKTTTAAKLALYLK-----KKGKKVLLVA 35 (173)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 456665 89999999999999984 6688888776
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK13231 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.02 Score=61.43 Aligned_cols=94 Identities=11% Similarity=0.097 Sum_probs=54.5
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-CCHHHHH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-VNEVPLM 298 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~~~~~l~ 298 (818)
+||+|||-..|++.... ....++...---+|+|+....-++..+-..++.++.-+..+.|+|.|+... ...+.++
T Consensus 113 ~yD~ViIDt~~~~~~~~----~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~ 188 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGG----FSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGIDNEVEIVS 188 (264)
T ss_pred CCCEEEEecCCCceEcc----ccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCccHHHHHH
Confidence 39999999966432110 000010011124677777777777777777777765555678899887632 2233333
Q ss_pred HhhcC-CCCEEe-cCCCCCCC
Q 003466 299 SYLRN-RVPVLV-LPPLPQDS 317 (818)
Q Consensus 299 ~~~~~-~~pvlg-iP~~~~~~ 317 (818)
+..+. +.++++ ||......
T Consensus 189 ~l~~~~~~~vl~~I~~~~~v~ 209 (264)
T PRK13231 189 EFASRIGSRIIGVIPRSNLVQ 209 (264)
T ss_pred HHHHHhCCCeEEeCCCCHHHH
Confidence 33322 788888 88765543
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.26 Score=55.52 Aligned_cols=205 Identities=10% Similarity=0.096 Sum_probs=122.1
Q ss_pred HHHHHHHhcCCCC-CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc--------
Q 003466 602 SYISQNLLQNPGL-KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-------- 672 (818)
Q Consensus 602 ~~Le~~L~~~~~~-~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-------- 672 (818)
+.|++.+...... .+..+....-+=|..|.-.|... +.+--++|.+|+++||+++|-||+. +|=..+..
T Consensus 185 E~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpY-y~Lq~~~y~~~~~~~~ 262 (472)
T KOG0634|consen 185 ESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPY-YFLQMNTYNPSLELES 262 (472)
T ss_pred HHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCcc-ceeeccccCCCccccC
Confidence 5667777654211 12223445555576688888877 7888999999999999999999998 55344421
Q ss_pred --chhccc-----------CCC---CcEEEecccccCCccccceeecchHHHhhccCChH-------------------H
Q 003466 673 --TTADLL-----------GCV---PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-------------------L 717 (818)
Q Consensus 673 --~a~e~~-----------gv~---PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-------------------~ 717 (818)
+..+.+ +.. --+-+|||-++-| +-+|-+.+++..++.....+. .
T Consensus 263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~ 341 (472)
T KOG0634|consen 263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKR 341 (472)
T ss_pred ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCc-ceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHH
Confidence 110011 111 1134899999999 799999999866654322211 1
Q ss_pred HHH-------------------HHHHHHHc-CCC-e--eEEEeeeeEEEEEEecCcccCCCchH-HHHHHHHHHHhCCce
Q 003466 718 WDL-------------------ELIQQISS-HRT-V--QRVVALGTLCAIELQAAGCNAGYGSL-YAASLLKKLREDGVY 773 (818)
Q Consensus 718 ~~~-------------------~l~~~l~~-~~~-v--~~vrg~Gl~~~iel~~~~~~~~~~~~-~a~~~~~~l~e~Gvl 773 (818)
|.+ .++..+.+ .|. + -.+-..|+++=|++.-.......+-. ....+...+.++||+
T Consensus 342 wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~ 421 (472)
T KOG0634|consen 342 WGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVK 421 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeE
Confidence 111 12233322 232 2 22345688888877511111111112 334455667799999
Q ss_pred Eeec-----------CC-EEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 774 MRPL-----------GN-VIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 774 v~p~-----------g~-~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
+.++ +. -+|++-+. ...|++++.+++|..++++.-.
T Consensus 422 ~v~G~~F~v~p~~s~~kiffRls~a~-a~~e~l~~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 422 LVCGSWFMVDPESSWSKIFFRLSIAF-AEPEKLDEGIERFGSVIKEHFI 469 (472)
T ss_pred EecCceeEEcCccCCCcceEEEEeec-CCHHHHHHHHHHHHHHHHHHhh
Confidence 8741 12 45555554 4567999999999999987543
|
|
| >PRK13233 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.025 Score=60.97 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=30.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCC-CCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS-ANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~-~g~~v~~~K 78 (818)
|++.|-|++ -.||||||+|.-|..+|. + +|+||..+=
T Consensus 1 M~~vIav~~-KGGVGKTT~a~nLA~~La-----~~~G~rvLliD 38 (275)
T PRK13233 1 MTRKIAIYG-KGGIGKSTTTQNTAAAMA-----YFHDKKVFIHG 38 (275)
T ss_pred CceEEEEEc-CCCCcHHHHHHHHHHHHH-----HhcCCeEEEec
Confidence 457788884 899999999999999994 4 599988764
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.047 Score=61.42 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=29.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.++|+|. +|+||||+++.|+..+. ++|.+|+++-
T Consensus 206 ~~ii~lvGp-tGvGKTTt~akLA~~l~-----~~g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQ-TGVGKTTTLVKLGWQLL-----KQNRTVGFIT 241 (407)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 456889997 69999999999999884 6788887654
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.054 Score=61.49 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=46.8
Q ss_pred CCEEEEeCCCCCCCcCCCC--CchhhHhhhCCC--CEEEEEcCCCChHHHHHHHHHHHH-hCCCcEEEEEEccCC-CCCH
Q 003466 221 EILCIVETAGGVASPGPSG--SLQCDLYRPFRL--PGILVGDGRLGGISGTISAYESLK-LRGYDVVAVVFEDHG-LVNE 294 (818)
Q Consensus 221 ~d~vivEGagg~~~p~~~~--~~~~dla~~l~~--pvilV~~~~~g~i~~~~~~~~~l~-~~~~~v~gvi~N~~~-~~~~ 294 (818)
+|+|||-++|.. +.+.. .-...+....+. .++||.+...+. +... +.+. ...+.+.|+|+.+.+ ....
T Consensus 255 ~DlVLIDTaGr~--~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~-~~~~---~~~~~~~~~~~~~~I~TKlDet~~~ 328 (388)
T PRK12723 255 FDLVLVDTIGKS--PKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT-SDVK---EIFHQFSPFSYKTVIFTKLDETTCV 328 (388)
T ss_pred CCEEEEcCCCCC--ccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHH---HHHHHhcCCCCCEEEEEeccCCCcc
Confidence 899999999954 32110 011233333433 489999987663 2222 2333 235678999999983 2333
Q ss_pred HHHHHhhcC-CCCEEec
Q 003466 295 VPLMSYLRN-RVPVLVL 310 (818)
Q Consensus 295 ~~l~~~~~~-~~pvlgi 310 (818)
-.+-+.... ++|+.-|
T Consensus 329 G~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 329 GNLISLIYEMRKEVSYV 345 (388)
T ss_pred hHHHHHHHHHCCCEEEE
Confidence 333332221 7887553
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0081 Score=59.77 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=35.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccC
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g 83 (818)
|+.+.|+|. +|+|||+++..|++.| + ++|++|+.+|.-.++
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l----~-~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPAL----S-ARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHH----H-HcCCcEEEEEecCCc
Confidence 678999999 6999999999999999 4 789999999965443
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.068 Score=56.48 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=33.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|+.|.|.+.-.||||||++..|+.+|. ++|++|..+-
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la-----~~G~~VlliD 37 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALA-----SDGKRVALFE 37 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 678999999999999999999999994 8899988776
|
|
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0072 Score=60.09 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=35.7
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
||+-|-|+|. +|+||||+...|++.| + .+|++|+..|=-
T Consensus 1 m~~Il~ivG~-k~SGKTTLie~lv~~L----~-~~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGY-KNSGKTTLIEKLVRKL----K-ARGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEec-CCCChhhHHHHHHHHH----H-hCCcEEEEEEec
Confidence 5888999999 8999999999999999 4 899999999943
|
|
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=64.04 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=32.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
|+.|-|+|. +|+||||++..|++.|. ++| +|++.|=
T Consensus 1 M~~i~i~G~-~gSGKTTLi~~Li~~L~-----~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGY-KATGKTTLVERLVDRLS-----GRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHH-----hCC-CEEEEEE
Confidence 678999999 59999999999999994 889 8999994
|
|
| >PRK13236 nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.031 Score=61.19 Aligned_cols=37 Identities=8% Similarity=0.232 Sum_probs=32.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|+.+-+.| -.|||||++++-|..+|. ++|+||..+=
T Consensus 5 ~~~~~~~~G-KGGVGKTt~a~NLA~~La-----~~G~rVLliD 41 (296)
T PRK13236 5 NIRQIAFYG-KGGIGKSTTSQNTLAAMA-----EMGQRILIVG 41 (296)
T ss_pred CceEEEEEC-CCcCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 467777877 789999999999999994 7899999885
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.16 Score=55.71 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=31.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.++.+.|+|. +|+||||++..|+..+. ++|.+|..+.
T Consensus 33 ~~~~i~i~G~-~G~GKttl~~~l~~~~~-----~~~~~v~~i~ 69 (300)
T TIGR00750 33 NAHRVGITGT-PGAGKSTLLEALGMELR-----RRGLKVAVIA 69 (300)
T ss_pred CceEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 3667889987 99999999999999994 7799998776
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PRK13235 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.059 Score=58.17 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|+.|-|.| -.||||||+|.-|..+|. ++|+||..+=
T Consensus 1 m~~iav~~-KGGVGKTT~~~nLA~~La-----~~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYG-KGGIGKSTTTQNTVAGLA-----EMGKKVMVVG 36 (274)
T ss_pred CCEEEEeC-CCCccHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 56777776 899999999999999994 8899998874
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.043 Score=62.14 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=44.5
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEEE--ecccccCCccccceeecchH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIAC--YGKLLTGGVIPLAATLATNA 706 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt--lgKgLggGy~PlsAvl~~~~ 706 (818)
....|.+-+ +++|.++|++|++.|.+|=+..|+.-.-+..-.-..|+ ..|=++ .-|-++-- ++.|+++.+++
T Consensus 204 tt~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P-~~~~~~l~r~~ 278 (373)
T PF00282_consen 204 TTNTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVP-YGCGVLLVRDK 278 (373)
T ss_dssp -TTTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-S-SS-EEEEESSG
T ss_pred CcccccccC----HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCC-ccceeEEeecc
Confidence 445577666 99999999999999999998877322222222222344 346554 56777766 47788888764
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.12 Score=54.19 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=33.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|+.|-+.++-.|+||||.+.+|+..|. ++|.+|..+-
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la-----~~G~~V~lID 37 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELA-----ARGARVALID 37 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 778889999999999999999999994 8899998886
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.3 Score=48.43 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCceEeec-CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLREDGVYMRPL-GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 759 ~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~ 809 (818)
.+..+.+.|.++||+.-.. .++|||.|+. -.+-+|+=.+++.|+++|++..
T Consensus 352 ~~~~V~qaLi~rGVigD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 352 HGYQVMQALIDRGVIGDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred cHHHHHHHHHHcCccccccCCCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence 3677899999999998654 4899998754 5677999999999999998754
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.054 Score=58.45 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (818)
+.+++.|.+ .+..+|++-=. -++.|+..+ .++...++|++|+++|++|-|-+ + -|.-|.++.|||.
T Consensus 132 e~i~~~lsq-------h~p~~vfv~hg-dsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgVD 197 (385)
T KOG2862|consen 132 EEITEKLSQ-------HKPKAVFVTHG-DSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGVD 197 (385)
T ss_pred HHHHHHHHh-------cCCceEEEEec-Cccccccch---HHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhccc
Confidence 566777763 34445544433 455676553 47888999999999999999985 3 3668999999985
Q ss_pred CcEEEecccccC--CccccceeecchHHHhhcc
Q 003466 682 PDIACYGKLLTG--GVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 682 PDivtlgKgLgg--Gy~PlsAvl~~~~i~~~l~ 712 (818)
-=+.--=|+|++ |. +-+..+++..+.++
T Consensus 198 vaytgSQKaL~aP~GL---siisfS~ka~~~~~ 227 (385)
T KOG2862|consen 198 VAYTGSQKALGAPAGL---SIISFSDKALEAIR 227 (385)
T ss_pred EEEecchhhcCCCCCc---ceeecCHHHHHHHh
Confidence 333445588885 53 33566776665554
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.1 Score=55.98 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=48.3
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc--------CCcEEEeecccCcccCCccchhcccCCCCcEEEec-
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--------KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG- 688 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~--------gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg- 688 (818)
.++..|.+--+ ....|.+.| ++.+.++++.. ++++++|=+|+ +|.. -.+.-.+.+|++++|
T Consensus 191 ~~t~LVa~~~v-sN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~----piDv~~~~~Dfl~~S~ 260 (805)
T PLN02724 191 EAYNLFAFPSE-CNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS----PPDLSRYPADFVVVSF 260 (805)
T ss_pred CCcceEEEEcc-ccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC----CCChhhcCCCEEEEec
Confidence 34456777666 788899886 55555545432 36899998884 3321 112223457988665
Q ss_pred -ccccCCccccceeecchHHHh
Q 003466 689 -KLLTGGVIPLAATLATNAVFD 709 (818)
Q Consensus 689 -KgLggGy~PlsAvl~~~~i~~ 709 (818)
|-+||= .-+|++.++++..+
T Consensus 261 HK~~GgP-~G~G~L~vr~~~~~ 281 (805)
T PLN02724 261 YKIFGYP-TGLGALLVRRDAAK 281 (805)
T ss_pred ceeccCC-CCceEEEEehhhhh
Confidence 655521 11577777877654
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.14 Score=58.65 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=43.6
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeec----ccCcccCCccchhcccCCCCcEEE-ecccc
Q 003466 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETTADLLGCVPDIAC-YGKLL 691 (818)
Q Consensus 617 ~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV----~TGfGRtG~~~a~e~~gv~PDivt-lgKgL 691 (818)
.+++|+|+++-- +.-|.+.. ++++.++++++|+++|+ =+ .+++-+-|.+++ ||++ .+|.+
T Consensus 195 ~~~~a~v~vq~P--n~~G~~ed----~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GA--------DI~vg~~Q~f 259 (429)
T PF02347_consen 195 DDDTAAVMVQNP--NTFGVFED----IKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGA--------DIVVGEHQTF 259 (429)
T ss_dssp STTEEEEEEESS---TTSB--T----HHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT---------SEEEECCTTT
T ss_pred ccCeEEEEeecC--CCCceEee----HHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCc--------cEEeeCCCCC
Confidence 368999999863 44566553 99999999999999997 22 334444454443 6663 34444
Q ss_pred c----CCccccce-eecchHHHhhc
Q 003466 692 T----GGVIPLAA-TLATNAVFDSF 711 (818)
Q Consensus 692 g----gGy~PlsA-vl~~~~i~~~l 711 (818)
| +| =|-++ +.+++++...+
T Consensus 260 g~p~~~G-GP~~G~~a~~~~l~r~l 283 (429)
T PF02347_consen 260 GIPMGFG-GPGAGFFAVREDLVRQL 283 (429)
T ss_dssp T---CCC--S--EEEEE-GGGGGGS
T ss_pred cccCCCC-CCCeeeEEEhhhhhhhC
Confidence 4 44 25555 44566655543
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK13234 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.083 Score=57.84 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|+.|-|. --.||||||++.-|..+|. ++|+||..+=
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la-----~~g~kVLliD 39 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALV-----EMGQKILIVG 39 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 46777776 6789999999999999994 8899998874
|
|
| >PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.08 Score=56.54 Aligned_cols=93 Identities=11% Similarity=0.170 Sum_probs=56.2
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChH---HHHHHHHHHHHhCC-CcEEEEEEccCC-CCCH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKLRG-YDVVAVVFEDHG-LVNE 294 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i---~~~~~~~~~l~~~~-~~v~gvi~N~~~-~~~~ 294 (818)
++|+|+-.-.|-+-++ ...+-+-+..--.|++|+++...++ |..+.++..+..++ .++.|+|.|+-. .+..
T Consensus 116 ~~D~v~yDVLGDVVCG----GFamPir~g~a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~ 191 (273)
T PF00142_consen 116 DYDFVLYDVLGDVVCG----GFAMPIREGYAQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRNVDDEE 191 (273)
T ss_dssp TSSEEEEEEESSSSCT----TTTHHHHTTS-SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHH
T ss_pred CCceEEEEEEeeeEEe----eeehhhhhccCCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCch
Confidence 4789887765533322 2345555555557899999886665 55555666665444 689999999653 3444
Q ss_pred HHHHHhhcC-CCCEEe-cCCCCCC
Q 003466 295 VPLMSYLRN-RVPVLV-LPPLPQD 316 (818)
Q Consensus 295 ~~l~~~~~~-~~pvlg-iP~~~~~ 316 (818)
+.++++.++ +.|+++ ||+.+..
T Consensus 192 ~~v~~fa~~~g~~i~~~iPr~~~v 215 (273)
T PF00142_consen 192 EIVEDFAERIGTPIIAFIPRSEIV 215 (273)
T ss_dssp HHHHHHHHHHTSEEEEEE---HHH
T ss_pred HHHHHHHHHcCCcEEEecCchHHH
Confidence 444444444 999999 9987653
|
Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H .... |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.54 Score=58.79 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
+.++.+++.++||+++.. ++.++++..-..|++||+.+++.|.
T Consensus 383 ~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 383 SSELLKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred HHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 567889999999998864 4789999999999999999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.078 Score=60.30 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=47.5
Q ss_pred CCCchhHHHHHHHHhccCCCCCC---CCCC-CCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 7 HHYPDHHRRILLRLFHHSTFHPQ---PLDL-PLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.-|.+++-+.+...+......+. +... -..++.|.|++.-.||||||+|..|..+|. ++|++|...=
T Consensus 70 r~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La-----~~G~rVLlID 140 (387)
T TIGR03453 70 RSYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTTAAHLAQYLA-----LRGYRVLAID 140 (387)
T ss_pred eeeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHHHHHHHHHHH-----hcCCCEEEEe
Confidence 45888887777666654211110 1111 144678999999999999999999999994 7799987764
|
Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.13 Score=57.10 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=62.1
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCC-EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-----CC
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-----VN 293 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-----~~ 293 (818)
.+|++||.++|=.----.-..-+.++++.++-. ||+|.|...|-- ..+..-.-.+-+.|.+||+.+.+. ..
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa---ae~Qa~aFk~~vdvg~vIlTKlDGhakGGgA 259 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA---AEAQARAFKETVDVGAVILTKLDGHAKGGGA 259 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh---HHHHHHHHHHhhccceEEEEecccCCCCCce
Confidence 499999999883221111113457788888743 899999776632 221111112458899999999721 11
Q ss_pred HHHHHHhhcCCCCEEecC---CCCCCCcchhhhhhhhh--hhhHHHHHHHHHH
Q 003466 294 EVPLMSYLRNRVPVLVLP---PLPQDSSNDLMEWFDES--HNVFDSLKNIMLL 341 (818)
Q Consensus 294 ~~~l~~~~~~~~pvlgiP---~~~~~~~~~~~~~l~~~--~~~l~~l~~~l~~ 341 (818)
... .+.+ +.||+.|- ..+++..=+-..+.... .+.|+++.+.+..
T Consensus 260 lSa-VaaT--ksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~e 309 (483)
T KOG0780|consen 260 LSA-VAAT--KSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQE 309 (483)
T ss_pred eee-hhhh--CCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHH
Confidence 111 2233 77876542 34444322333333222 1446666655544
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.2 Score=56.94 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv 680 (818)
+.+++.+++ .+...||+-+- ..+-+.. +++++++|++.|++|++|=.|+ |+ --|..+. .-+..
T Consensus 159 d~l~~~a~~-------~kPklIi~G~S------~y~~~~d-~~~~reIad~vga~l~~D~sH~~GL-Ia~g~~~-~P~~~ 222 (399)
T PF00464_consen 159 DELEKLAKE-------HKPKLIICGAS------SYPRPID-FKRFREIADEVGAYLMADISHIAGL-IAGGLFP-NPFPY 222 (399)
T ss_dssp HHHHHHHHH-------H--SEEEEE-S------STSS----HHHHHHHHHHTT-EEEEE-TTTHHH-HHTTSS---GCCT
T ss_pred HHHHHHHhh-------cCCCEEEECch------hccCccC-HHHHHHHHHhcCcEEEecccccccc-eehheec-Ccccc
Confidence 556666653 24456676653 1222333 6999999999999999999886 44 2222222 22332
Q ss_pred CCcEE--EecccccCCccccce-eecc--------------hHHHhhccC----C----hH-------------------
Q 003466 681 VPDIA--CYGKLLTGGVIPLAA-TLAT--------------NAVFDSFVG----D----SK------------------- 716 (818)
Q Consensus 681 ~PDiv--tlgKgLggGy~PlsA-vl~~--------------~~i~~~l~~----~----~~------------------- 716 (818)
.|++ +.-|.|.| |-|+ ++++ +++.+.+.. . .+
T Consensus 223 -ADvvt~sThKtl~G---PrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~f 298 (399)
T PF00464_consen 223 -ADVVTGSTHKTLRG---PRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEF 298 (399)
T ss_dssp -SSEEEEESSGGG-S---SS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHH
T ss_pred -ceEEEeeccccccc---cCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHH
Confidence 6888 46689987 3344 5556 455554321 1 11
Q ss_pred -HH-------HHHHHHHHHcCCCeeEEEeee---eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--------
Q 003466 717 -LW-------DLELIQQISSHRTVQRVVALG---TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------- 777 (818)
Q Consensus 717 -~~-------~~~l~~~l~~~~~v~~vrg~G---l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------- 777 (818)
.+ .+.|.+.|.+.+. .|-+.| .++-+++.... ..+....+.|.+.||++...
T Consensus 299 k~Ya~qVv~NAk~La~~L~~~G~--~v~~ggTd~H~vlvd~~~~~-------~~g~~a~~~Le~~gI~vnkn~iP~d~~~ 369 (399)
T PF00464_consen 299 KEYAKQVVKNAKALAEALQERGF--KVVTGGTDNHQVLVDLRSFG-------IDGKEAEKALEEAGIIVNKNTIPGDRSP 369 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEGGGS-SSSEEEEEGGGGT-------S-HHHHHHHHHHTTEE-EEE--TTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCc--EEEECCCCCCeEEEEecccc-------cchHHHHHHHHhcCeeecccccCCCCCC
Confidence 00 0123344554443 111112 24444543321 13556677888999999741
Q ss_pred --CCEEEEECCCC----ChHHHHHHHHHHH
Q 003466 778 --GNVIYLMCGPC----SSPEVCSQLLLKL 801 (818)
Q Consensus 778 --g~~ir~~ppl~----~t~edId~~~~~l 801 (818)
...||+-.+.. +.++|++++.+.|
T Consensus 370 ~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 370 FVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp TT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred CCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 25788877653 4577777776543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.022 Score=62.09 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=32.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+.+.||+..+||-|.++.|.++|+ ++|+++.+.=
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~-----~~G~~a~fva 148 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALR-----ERGINAGFVA 148 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHH-----HcCCCceEEe
Confidence 3578999999999999999999999994 8999987754
|
The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.11 Score=60.24 Aligned_cols=210 Identities=14% Similarity=-0.002 Sum_probs=107.3
Q ss_pred CHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
++...+++...+++- +.....-...+...++...|.++++.+.-..-.|+++|||||..|+.+|+..|..+.+..
T Consensus 75 ~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~---- 150 (460)
T COG0076 75 PPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAE---- 150 (460)
T ss_pred HHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhc----
Confidence 445555555555442 211111123444555556666666543223468999999999999999943332221100
Q ss_pred CCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
....+....|.+....|-+..-++.+-|.....-+ -.|.
T Consensus 151 ----~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~---------------------------~~~~---------- 189 (460)
T COG0076 151 ----SGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVP---------------------------TVPT---------- 189 (460)
T ss_pred ----ccccCCCCeEEecCcchhHHHHHHHHhCCCceeEE---------------------------eccC----------
Confidence 00011122566777788766555555443311110 0010
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE--EEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG--ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iA--AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
+..+ | .+.+++.+.+. ++. .|-+=+ ...-|.+-+ +++|.++|+++|
T Consensus 190 ---~~~i--------d--------~~~l~~~i~~~-------t~~g~vV~~aG--tT~~G~iDd----i~~ia~ia~~~~ 237 (460)
T COG0076 190 ---DYRI--------D--------VDALEEAIDEN-------TIGGVVVGTAG--TTDTGSIDD----IEELADIAEEYG 237 (460)
T ss_pred ---cccc--------C--------HHHHHHHHHhh-------ccCceEEEEec--CCCCCccCC----HHHHHHHHHHcC
Confidence 0000 0 25677777642 222 222223 234455554 999999999999
Q ss_pred CcEEEeecccCcccCCccch--hc-ccCC-CCcEEEec-ccccCCccccceeecchH
Q 003466 655 IPVIFDEVFTGFWRLGVETT--AD-LLGC-VPDIACYG-KLLTGGVIPLAATLATNA 706 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a--~e-~~gv-~PDivtlg-KgLggGy~PlsAvl~~~~ 706 (818)
+.+.+|=+..||=. .+.- .. .+++ ..|-+++. --.|.-.+|.|+++.+++
T Consensus 238 i~lHVDAA~GG~~~--pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~ 292 (460)
T COG0076 238 IWLHVDAAFGGFLL--PFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDE 292 (460)
T ss_pred CcEEEEccccceee--cccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECH
Confidence 99999999987622 1100 01 1233 23444433 122333356666777765
|
|
| >PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.065 Score=61.36 Aligned_cols=66 Identities=14% Similarity=0.052 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHhccCCCCCCC-----CCCC-CCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 8 HYPDHHRRILLRLFHHSTFHPQP-----LDLP-LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
-|-.++-+.+.+++..+.....+ -.-+ ..|+.|-|+..-.||||||+|.-|..+|. ++|++|...=
T Consensus 86 ~yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA-----~~G~rVLlID 157 (405)
T PRK13869 86 FYTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLA-----LQGYRVLAVD 157 (405)
T ss_pred eecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHH-----hcCCceEEEc
Confidence 46667767777777652111111 1111 34788999999999999999999999994 7899987654
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.16 Score=58.10 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=27.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+.++|+|. +|+||||+++-|+..+. . ++|.+|..+-
T Consensus 224 ~vi~lvGp-tGvGKTTtaaKLA~~~~---~-~~G~~V~Lit 259 (432)
T PRK12724 224 KVVFFVGP-TGSGKTTSIAKLAAKYF---L-HMGKSVSLYT 259 (432)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCeEEEec
Confidence 35788885 89999999999997552 1 6688777654
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.075 Score=56.91 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=32.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
||..++|+|. .|+||||++..+..++. ++|.+|..+.
T Consensus 1 ~~~~i~v~G~-~G~GKTt~~~~~~~~l~-----~~g~~v~~i~ 37 (253)
T PRK13768 1 MMYIVFFLGT-AGSGKTTLTKALSDWLE-----EQGYDVAIVN 37 (253)
T ss_pred CcEEEEEECC-CCccHHHHHHHHHHHHH-----hcCCceEEEE
Confidence 5678899999 99999999999999994 7899988876
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.083 Score=56.26 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=36.9
Q ss_pred hHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 12 HHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.++.++++++.. ...|=|||+ .|+||||+.-.|.+.|+ ++|++|+..-
T Consensus 14 ~~~~ll~~l~~~~g~----------a~~iGiTG~-PGaGKSTli~~l~~~~~-----~~g~~VaVlA 64 (266)
T PF03308_consen 14 EARELLKRLYPHTGR----------AHVIGITGP-PGAGKSTLIDALIRELR-----ERGKRVAVLA 64 (266)
T ss_dssp HHHHHHHHHGGGTT-----------SEEEEEEE--TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred HHHHHHHHHHhhcCC----------ceEEEeeCC-CCCcHHHHHHHHHHHHh-----hcCCceEEEE
Confidence 556677777766422 236888998 89999999999999995 7799988765
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.52 Score=52.53 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=30.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+-|+|. .|+||||++..|...|. ++|.+|+.+.
T Consensus 58 ~igi~G~-~GaGKSTl~~~l~~~l~-----~~g~~v~vi~ 91 (332)
T PRK09435 58 RIGITGV-PGVGKSTFIEALGMHLI-----EQGHKVAVLA 91 (332)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 6888888 99999999999999994 6788988877
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.18 Score=51.97 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=48.2
Q ss_pred CCCEEEEeCCCCCCCcCCCC--CchhhHhhhC-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-CCHH
Q 003466 220 MEILCIVETAGGVASPGPSG--SLQCDLYRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-VNEV 295 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~--~~~~dla~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~~~~ 295 (818)
++|+|+|-++| .+|.+.. .-.-.+.+.. ...++||.+...+.- ..-...... +...+.|+|+-+.++ ...-
T Consensus 83 ~~D~vlIDT~G--r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~--~~~~~~~lIlTKlDet~~~G 157 (196)
T PF00448_consen 83 GYDLVLIDTAG--RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFY--EAFGIDGLILTKLDETARLG 157 (196)
T ss_dssp TSSEEEEEE-S--SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHH--HHSSTCEEEEESTTSSSTTH
T ss_pred CCCEEEEecCC--cchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHh--hcccCceEEEEeecCCCCcc
Confidence 48999999998 3343211 1112233333 556999999776542 222222222 224577999999943 2333
Q ss_pred HHHHhhcC-CCCEEecCCCCC
Q 003466 296 PLMSYLRN-RVPVLVLPPLPQ 315 (818)
Q Consensus 296 ~l~~~~~~-~~pvlgiP~~~~ 315 (818)
.+-+.... ++|+--|-.-+.
T Consensus 158 ~~l~~~~~~~~Pi~~it~Gq~ 178 (196)
T PF00448_consen 158 ALLSLAYESGLPISYITTGQR 178 (196)
T ss_dssp HHHHHHHHHTSEEEEEESSSS
T ss_pred cceeHHHHhCCCeEEEECCCC
Confidence 33332222 888866544333
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=2.4 Score=48.02 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 758 ~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
..+..+..+....|+.++.. ...+-++..=++|++||+.+++++...
T Consensus 400 ~~~~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 400 EVAEALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred hHHHHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 34666778888889999874 357778888899999999999988754
|
|
| >cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.079 Score=56.91 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=27.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|-|+| +||+||||++..|.+.| + +.|.++..+.
T Consensus 2 IgItG-~SGSGKTTv~~~l~~~l----~-~~g~~v~vI~ 34 (277)
T cd02029 2 IAVTG-SSGAGTTTVKRAFEHIF----A-REGIHPAVVE 34 (277)
T ss_pred EEEEC-CCCCCHHHHHHHHHHHH----H-hcCCceEEEe
Confidence 56778 69999999999999999 3 6788887766
|
PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.7 Score=49.25 Aligned_cols=136 Identities=10% Similarity=-0.057 Sum_probs=82.3
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccc-cceeecchHHHhhccCChH-----------------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP-LAATLATNAVFDSFVGDSK----------------- 716 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~P-lsAvl~~~~i~~~l~~~~~----------------- 716 (818)
+++|+|=+++-. +.-.-.+.+|+ |+..-=|.+| -| ++.+++++++.+.......
T Consensus 171 ~~lvVDa~Ss~g---~~pidv~~~~v--~~~saqK~lG---P~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~T 242 (365)
T PLN02452 171 VPLVADMSSNFL---SKPVDVSKYGV--IYAGAQKNVG---PSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNT 242 (365)
T ss_pred CeEEEECCcccc---CcccCHHHcCE--EEEecccccC---CCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCC
Confidence 899999888532 22344556676 7777778884 23 7788889888765432110
Q ss_pred --------------HHH----------------HHHHHHHHcCCCe-eE-EE---eeeeEEEEEEecCcccCCCchHHHH
Q 003466 717 --------------LWD----------------LELIQQISSHRTV-QR-VV---ALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 717 --------------~~~----------------~~l~~~l~~~~~v-~~-vr---g~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
.+. +.+.+.+++.+.+ .. +. .....+.+.+... ....
T Consensus 243 P~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~--------~~~~ 314 (365)
T PLN02452 243 PPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS--------ELEA 314 (365)
T ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc--------hhHH
Confidence 011 1122333333322 11 10 1233444444322 3567
Q ss_pred HHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.|.+.+.++|++..++. ..+|+..=-.++.++++.+++.+++.-+
T Consensus 315 ~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 315 EFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred HHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 89999999999997632 2378877667999999999988877643
|
|
| >PRK15453 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.16 Score=54.93 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.++.|-|+|+ ||+||||++.+|...| + +.+.++.+..
T Consensus 4 k~piI~ItG~-SGsGKTTva~~l~~if----~-~~~~~~~vi~ 40 (290)
T PRK15453 4 KHPIIAVTGS-SGAGTTTVKRAFEKIF----R-RENINAAVVE 40 (290)
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHH----h-hcCCCeEEEe
Confidence 3456788886 9999999999999999 3 5565544443
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.4 Score=48.73 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecc
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF 663 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~ 663 (818)
.+.|++.|++ .+.++|+-|+.-=. .+..|-.+.+-.-+++++++|++|||++++|-.-
T Consensus 171 ~~kLe~lide----vG~~nvp~I~~tiT-~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~R 228 (471)
T COG3033 171 LEKLERLIDE----VGADNVPYIVLTIT-NNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAAR 228 (471)
T ss_pred HHHHHHHHHH----hCcccCcEEEEEEe-ccccCCCcchHHhHHHHHHHHHHcCCcEEeehhh
Confidence 3778888886 56677765554433 3344556668899999999999999999999543
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.083 Score=53.28 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=32.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+++.+-|+|. +|+||||+...|++.| + .+|.+|+..|
T Consensus 5 ~~~ii~ivG~-sgsGKTTLi~~li~~l----~-~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAW-SGTGKTTLLKKLIPAL----C-ARGIRPGLIK 41 (173)
T ss_pred CceEEEEECC-CCChHHHHHHHHHHHH----h-hcCCeEEEEE
Confidence 3556778875 9999999999999999 4 7799999999
|
|
| >PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.029 Score=59.44 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=34.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
||.|.|+|+-.||||||+|+.|..+|. +.|++|...-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~-----~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALA-----RLGESVLAID 37 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 889999999999999999999999994 8899988765
|
It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.033 Score=54.23 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=31.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceecc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQT 82 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~ 82 (818)
|.++|+|. +|+||||++..|++.|. ++|.+|+++|=...
T Consensus 1 pvv~VvG~-~~sGKTTl~~~Li~~l~-----~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGP-KNSGKTTLIRKLINELK-----RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEEE-ST
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHh-----HcCCceEEEEEccC
Confidence 47899997 79999999999999994 89999999996544
|
|
| >COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.8 Score=45.43 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=56.3
Q ss_pred CCEEEEeCC-----CCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHH---HHHHHHHHh-CCCcEEEEEEccCCC
Q 003466 221 EILCIVETA-----GGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGT---ISAYESLKL-RGYDVVAVVFEDHGL 291 (818)
Q Consensus 221 ~d~vivEGa-----gg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~---~~~~~~l~~-~~~~v~gvi~N~~~~ 291 (818)
-|+|+-.=- ||.+.|+.++.. -.+.+|+++.-.++-++ .-++.-+.. .++++.|+|.|.-..
T Consensus 118 ~DvviyDVLGDVVCGGFAmPiReg~A---------deiyIVtSge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~ 188 (278)
T COG1348 118 LDVVIYDVLGDVVCGGFAMPIREGYA---------DEIYIVTSGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSV 188 (278)
T ss_pred CCEEEEeccCceeecceeeehhcccC---------cEEEEEecCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCc
Confidence 377765433 677778765543 24678888876665444 334433333 568899999998754
Q ss_pred CC-HHHHHHhhcC-CCCEEe-cCCCCCCC
Q 003466 292 VN-EVPLMSYLRN-RVPVLV-LPPLPQDS 317 (818)
Q Consensus 292 ~~-~~~l~~~~~~-~~pvlg-iP~~~~~~ 317 (818)
+. .+.++++.++ +.|+++ ||+.+..+
T Consensus 189 ~~e~e~v~~fa~~igt~li~~vPr~~ivq 217 (278)
T COG1348 189 DRERELVEAFAERLGTQLIHFVPRDNIVQ 217 (278)
T ss_pred ccHHHHHHHHHHHhCCceEeeccchHHHH
Confidence 43 3344444444 999999 99987654
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=94.70 E-value=1 Score=50.58 Aligned_cols=187 Identities=13% Similarity=0.112 Sum_probs=104.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHH-HHhcCCcEEEeecccCcccCCcc--------
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVE-------- 672 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreL-c~~~gilLI~DEV~TGfGRtG~~-------- 672 (818)
+.+|+++.+ ...|.+|.+=|.+++-.|+.. +.+-.++|..+ +...+.-++-|.+++----++..
T Consensus 161 D~Ve~LV~~------D~svKGiWcVP~ySNPtG~ty-Sde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~ni 233 (425)
T PF12897_consen 161 DMVEELVAE------DPSVKGIWCVPKYSNPTGITY-SDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNI 233 (425)
T ss_dssp HHHHHHTHT------STTEEEEEE-SSS-TTT------HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------H
T ss_pred HHHHHHHhc------CCccceEEeCCCccCCCCccC-CHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHH
Confidence 567777652 568999999999766677655 88999999988 45789999999998521111211
Q ss_pred -chhcccCCCCcEE----EecccccCCccccceeecchHHHhhccCChH-------------------------------
Q 003466 673 -TTADLLGCVPDIA----CYGKLLTGGVIPLAATLATNAVFDSFVGDSK------------------------------- 716 (818)
Q Consensus 673 -~a~e~~gv~PDiv----tlgKgLggGy~PlsAvl~~~~i~~~l~~~~~------------------------------- 716 (818)
-.++..| .||.+ ..||--=.| .=+|++.++++-++++.....
T Consensus 234 l~~~~~AG-npdrv~~F~STSKITf~G-aGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~k 311 (425)
T PF12897_consen 234 LDACAKAG-NPDRVYVFASTSKITFPG-AGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRK 311 (425)
T ss_dssp HHHHHHTT--TTSEEEEEESTTTS-TT-SS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHH
T ss_pred HHHHHHcC-CCCeEEEEecccccccCC-cceeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHH
Confidence 1112222 47754 577844222 237889998877766543211
Q ss_pred ---HHH-------HHHHHHHH-cCCCe-eEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------
Q 003466 717 ---LWD-------LELIQQIS-SHRTV-QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------- 777 (818)
Q Consensus 717 ---~~~-------~~l~~~l~-~~~~v-~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------- 777 (818)
+++ +.+.+.|. ..+.. ...-.-|.++.++..+. .|.++.+.|.|.||.+.+.
T Consensus 312 Ha~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G---------~AkrvV~lakeAGV~LT~AGAtfPyg 382 (425)
T PF12897_consen 312 HAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG---------TAKRVVELAKEAGVALTPAGATFPYG 382 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT----------HHHHHHHHHHTTEE---TTTTSGGG
T ss_pred HHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC---------hHHHHHHHHHHhCceeCCCCCCCCCC
Confidence 000 11222333 22332 22234577888887654 4888999999999999862
Q ss_pred ----CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 778 ----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 778 ----g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
...||+.|++ -+.+|++.+.+.+--+++-
T Consensus 383 ~DP~D~nIRiAPS~-P~leel~~Am~~~~~cv~l 415 (425)
T PF12897_consen 383 KDPRDSNIRIAPSY-PSLEELETAMDVFATCVKL 415 (425)
T ss_dssp --TTS-EEEE--SS-S-HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcEEecCCC-CCHHHHHHHHHHHHHHHHH
Confidence 3689999987 5678999999999777643
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.14 Score=61.51 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=35.4
Q ss_pred CCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
.+|+.|-|+|. +|+||||+...|+..| + ++|++|+..|=
T Consensus 8 ~~~~vi~ivG~-s~sGKTTlie~li~~L----~-~~G~rVavIKh 46 (597)
T PRK14491 8 LSIPLLGFCAY-SGTGKTTLLEQLIPEL----N-QRGLRLAVIKH 46 (597)
T ss_pred CCccEEEEEcC-CCCCHHHHHHHHHHHH----H-hCCceEEEEEc
Confidence 35888999997 9999999999999999 4 88999999994
|
|
| >COG3367 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.17 Score=55.07 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=33.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+++.||+.-+||-|.+.-|-++++ .+|+++.+.-
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~-----e~G~~a~fva 184 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAR-----EEGIKAGFVA 184 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHH-----HhCCccceEe
Confidence 468999999999999999999999994 8899988765
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.64 Score=50.35 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+.+.|. +|+|||++...|+..+. .+|.+|++.-
T Consensus 75 ~~~i~~~G~-~g~GKTtl~~~l~~~l~-----~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 110 (270)
T ss_pred CCEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 357888888 99999999999999983 5677777665
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.7 Score=56.62 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhC----CCCEEEEEcCCCCh--HHHHHHHHHHHHhC-CCcEEEEEEccCCC-
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGRLGG--ISGTISAYESLKLR-GYDVVAVVFEDHGL- 291 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l----~~pvilV~~~~~g~--i~~~~~~~~~l~~~-~~~v~gvi~N~~~~- 291 (818)
.+|+|||.++| .++.+ ...+-++.+.. ...++||.+.-.+. ++.++ +.++.. +.++.|+||.|.++
T Consensus 263 ~~D~VLIDTAG--Rs~~d-~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 263 DKHLVLIDTVG--MSQRD-RNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCCEEEEeCCC--CCccC-HHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccCCCCEEEEeccCCC
Confidence 37999999999 33332 22333333322 23489999866432 33333 333322 34688999999943
Q ss_pred CCHHH---HHHhhcCCCCEEec
Q 003466 292 VNEVP---LMSYLRNRVPVLVL 310 (818)
Q Consensus 292 ~~~~~---l~~~~~~~~pvlgi 310 (818)
...-. +...+ ++|+.-|
T Consensus 337 ~~~G~iL~i~~~~--~lPI~yi 356 (767)
T PRK14723 337 THLGPALDTVIRH--RLPVHYV 356 (767)
T ss_pred CCccHHHHHHHHH--CCCeEEE
Confidence 22222 23333 8887654
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.1 Score=50.62 Aligned_cols=198 Identities=15% Similarity=0.066 Sum_probs=110.3
Q ss_pred CHHHHHHHHHhhhhccccc---CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccccc
Q 003466 418 QIELARDMGYTAARFGHVM---FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~---~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~ 494 (818)
+|+.++|+.+.+..+...- -.+...+-..++++.++..++ .+.++.+|.-+.|+..++-.. .
T Consensus 40 ~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~---aea~~ivnnn~aAVll~~~al-----~------- 104 (395)
T COG1921 40 SPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTG---AEAAAIVNNNAAAVLLTLNAL-----A------- 104 (395)
T ss_pred CHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccc---hhheeeECCcHHHHHHHHhhh-----c-------
Confidence 7999999998877643221 111122223377777777776 368888899898988877654 1
Q ss_pred ccCCCccccccceEEEEEcC---CCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhh
Q 003466 495 FLGKDTTEKCIELKVLALKG---SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~---sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (818)
.++..|+.+=. +||-...+.+.++|....--
T Consensus 105 ---------~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~Ev------------------------------------- 138 (395)
T COG1921 105 ---------EGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEV------------------------------------- 138 (395)
T ss_pred ---------cCCeEEEEccccccCCCCChhHHHHHcCCEEEEe-------------------------------------
Confidence 11223333211 45555555555554331100
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~ 651 (818)
++ .|-. .....+.+|.+ +. ....=+..+- .+.-|++. ++.+.++|+
T Consensus 139 ----G~--tn~t----------------~~~d~~~AIne-----~t-a~llkV~s~~-~~f~~~l~-----~~~l~~ia~ 184 (395)
T COG1921 139 ----GT--TNRT----------------HLKDYELAINE-----NT-ALLLKVHSSN-YGFTGMLS-----EEELVEIAH 184 (395)
T ss_pred ----cc--cCcC----------------CHHHHHHHhcc-----CC-eeEEEEeecc-cccccccc-----HHHHHHHHH
Confidence 00 0100 01345566652 22 2222223331 13334444 788999999
Q ss_pred hcCCcEEEeecccCcccCCccch-hcccCCCCcEEEec--ccccCCccccceeecchHHHhhccCC
Q 003466 652 NRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD 714 (818)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~~ 714 (818)
+||+++|+|..- |. +.-+... .+.+-.-+|+++|| |-|+| ---|-+++++++++.+...
T Consensus 185 ~~~lpvivD~aS-g~-~v~~e~~l~~~la~GaDLV~~SgdKllgG--PqaGii~GkKelI~~lq~~ 246 (395)
T COG1921 185 EKGLPVIVDLAS-GA-LVDKEPDLREALALGADLVSFSGDKLLGG--PQAGIIVGKKELIEKLQSH 246 (395)
T ss_pred HcCCCEEEecCC-cc-ccccccchhHHHhcCCCEEEEecchhcCC--CccceEechHHHHHHHHhh
Confidence 999999999766 43 2212222 22334458999886 67775 1223388999999877654
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.29 Score=47.96 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+.+.|. .|+|||+++..|...+. ++|.++..+.
T Consensus 2 i~~~G~-~GsGKTt~~~~l~~~~~-----~~g~~v~ii~ 34 (148)
T cd03114 2 IGITGV-PGAGKSTLIDALITALR-----ARGKRVAVLA 34 (148)
T ss_pred EEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 456676 79999999999999994 7788888776
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.5 Score=49.80 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+..|.+.|.++|+.+.++ |+.+|+.---.++++||+.+++.|+-+.++
T Consensus 321 ~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~ 373 (374)
T TIGR01365 321 AKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFAL 373 (374)
T ss_pred HHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence 567889999999988752 478999888889999999999999877653
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.39 E-value=4.5 Score=45.40 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCC-ccchhc---
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLG-VETTAD--- 676 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG-~~~a~e--- 676 (818)
+.|++.++++. .+-.--+.||+.|- +-.|-+. ..+-++++...|.++|++|++|||+- -..-.| +|..+.
T Consensus 201 ~el~~~~~eA~--k~i~~r~lvvINPG--NPTGqvl-s~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl 275 (475)
T KOG0258|consen 201 AELERSVDEAR--KGINPRALVVINPG--NPTGQVL-SEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVL 275 (475)
T ss_pred HHHHHHHHHHh--ccCCceEEEEECCC--Cccchhh-cHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHH
Confidence 34555555421 12233578999995 5556655 88999999999999999999999965 344555 344432
Q ss_pred -ccC-CCCcE------EEeccccc
Q 003466 677 -LLG-CVPDI------ACYGKLLT 692 (818)
Q Consensus 677 -~~g-v~PDi------vtlgKgLg 692 (818)
+.| --||- -..|||.-
T Consensus 276 ~emg~~~~~~v~L~SfhSvSKGy~ 299 (475)
T KOG0258|consen 276 HEMGNPYPDNVSLASFHSVSKGYM 299 (475)
T ss_pred HHhcCccCCceEEEeeecccccce
Confidence 123 34542 25678764
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.81 Score=44.72 Aligned_cols=62 Identities=19% Similarity=0.020 Sum_probs=46.0
Q ss_pred CchhhHhhhCCCCEEEEEc-CCCC-hHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhc
Q 003466 240 SLQCDLYRPFRLPGILVGD-GRLG-GISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLR 302 (818)
Q Consensus 240 ~~~~dla~~l~~pvilV~~-~~~g-~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~ 302 (818)
...-.+++.++.|||=|+. .++- .-...-.+.+.|+..|++=. +.++-+..+..+.|.++++
T Consensus 79 ~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 79 VFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred cCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCCCcCHHHHHHHHh
Confidence 3446678889999998777 6665 34555667788888887633 7777777888888888873
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK13886 conjugal transfer protein TraL; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.86 Score=48.46 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=32.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|++.++|.+.-.|||||++++.|..+|. ++|.+|..+-
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~-----~~g~~vl~iD 38 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKA-----SKGQKPLCID 38 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 4677899999999999999999999994 7788887654
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.27 Score=53.57 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=30.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-C-CceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-N-KKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~-g-~~v~~~K 78 (818)
.+.++|.|. ||+||||+++.|+..+. .+ | .+|+++.
T Consensus 194 ~~vi~~vGp-tGvGKTTt~~kLa~~~~-----~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGP-TGVGKTTTLAKLAARFV-----LEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HHcCCCeEEEEE
Confidence 457888897 89999999999999984 33 4 8888887
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.6 Score=48.25 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCC---CCCchhhHhhhCCCC-----EEEEEcCCCC--hH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SGSLQCDLYRPFRLP-----GILVGDGRLG--GI 264 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~---~~~~~~dla~~l~~p-----vilV~~~~~g--~i 264 (818)
..+.+++++...+ .+|+|||.+||=+..-.+ +=.-..++++.. .| ++||.|.-.| ++
T Consensus 208 aVafDAi~~Akar------------~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~-~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 208 AVAFDAIQAAKAR------------GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKD-DPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred HHHHHHHHHHHHc------------CCCEEEEeCcccccCchhHHHHHHHHHHHhccc-cCCCCceEEEEEEcccChhHH
Confidence 3566677766654 499999999996554321 111223444443 33 8888887665 34
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccCCCC----CHHHHHHhhcCCCCEEecC
Q 003466 265 SGTISAYESLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRNRVPVLVLP 311 (818)
Q Consensus 265 ~~~~~~~~~l~~~~~~v~gvi~N~~~~~----~~~~l~~~~~~~~pvlgiP 311 (818)
+|+-. +. .-..|-|+|+.+...+ -.-.|...+ ++||+-|-
T Consensus 275 ~QAk~----F~-eav~l~GiIlTKlDgtAKGG~il~I~~~l--~~PI~fiG 318 (340)
T COG0552 275 SQAKI----FN-EAVGLDGIILTKLDGTAKGGIILSIAYEL--GIPIKFIG 318 (340)
T ss_pred HHHHH----HH-HhcCCceEEEEecccCCCcceeeeHHHHh--CCCEEEEe
Confidence 44433 22 2356899999998321 233455666 89987643
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.055 Score=60.23 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCcEEEeecc------cCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccC
Q 003466 643 QRILVKECQNRKIPVIFDEVF------TGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG 713 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~------TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~ 713 (818)
++++.+++++|++++|.|=.- +.+|-.++.-..+...--+|++||| |.|||= --|.+++++++++.++.
T Consensus 159 ~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP--QaGiI~Gkk~lI~~lk~ 235 (367)
T PF03841_consen 159 LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKK 235 (367)
T ss_dssp --HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS---S-EEEEEEHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC--CeEEEEeCHHHHHHHhh
Confidence 899999999999999999543 1122223333333334457999997 677772 23457789999997764
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.16 Score=57.42 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=34.3
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
+|+.+-|+|. +|+||||+...|++.|. ++|++|++.|=
T Consensus 204 ~~~~~~~~g~-~~~GKtt~~~~l~~~l~-----~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGY-SGTGKTTLLEKLIPELI-----ARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecC-CCCCHHHHHHHHHHHHH-----HcCCEEEEEEE
Confidence 4778999995 99999999999999994 88999999994
|
|
| >COG2403 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.05 Score=60.01 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=36.4
Q ss_pred CCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 34 ~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
....+.|-|+||+|++|||+||..++|.| + .+|++|+...
T Consensus 123 ~~ekPviaV~atrtg~GKsaVS~~v~r~l----~-ergyrv~vVr 162 (449)
T COG2403 123 KLEKPVIAVTATRTGVGKSAVSRYVARLL----R-ERGYRVCVVR 162 (449)
T ss_pred hhcCceEEEEEeccccchhHHHHHHHHHH----H-HcCCceEEEe
Confidence 35578999999999999999999999999 4 8999999887
|
|
| >KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.19 Score=55.38 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=31.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
-|++||.|. +++||||+|.-|+.+.. ++|.++.|.-
T Consensus 103 GPrv~vVGp-~d~GKsTl~r~L~nyav-----k~gr~Plfv~ 138 (415)
T KOG2749|consen 103 GPRVMVVGP-TDVGKSTLCRILLNYAV-----KQGRRPLFVE 138 (415)
T ss_pred CCEEEEECC-CccchHHHHHHHHHHHH-----HcCCcceEEE
Confidence 467999997 89999999999999995 7788887765
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.069 Score=46.71 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=29.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
++++|.. |+|||+++..|++.|. +.|.+|..++
T Consensus 2 ~~~~g~~-G~Gktt~~~~l~~~l~-----~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG-GVGKTTLAANLAAALA-----KRGKRVLLID 34 (99)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHH-----HCCCeEEEEC
Confidence 5788888 9999999999999994 7799999998
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=4.9 Score=45.47 Aligned_cols=48 Identities=15% Similarity=-0.080 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 758 ~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.....|.+.+.++|++.-.+. ..+|.+.=-.++.|+++.+++-+.+.-
T Consensus 310 ~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~ 360 (364)
T PRK12462 310 RLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFA 360 (364)
T ss_pred HHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 567789999999999885421 347777766789999998888776654
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.7 Score=44.86 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=29.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+.|+|. .|+||||+...|++.+ .++.+++.++
T Consensus 22 ~~~i~~~G~-~gsGKTTli~~l~~~~------~~~~~v~v~~ 56 (207)
T TIGR00073 22 LVVLNFMSS-PGSGKTTLIEKLIDNL------KDEVKIAVIE 56 (207)
T ss_pred cEEEEEECC-CCCCHHHHHHHHHHHH------hcCCeEEEEE
Confidence 557888887 8999999999999988 4467888888
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.97 Score=52.81 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=27.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC-CceeEE
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g-~~v~~~ 77 (818)
-..+.+.|. +|+||||++.-|+..+. . ++| ++|+..
T Consensus 256 g~Vi~LvGp-nGvGKTTTiaKLA~~~~---~-~~G~~kV~LI 292 (484)
T PRK06995 256 GGVFALMGP-TGVGKTTTTAKLAARCV---M-RHGASKVALL 292 (484)
T ss_pred CcEEEEECC-CCccHHHHHHHHHHHHH---H-hcCCCeEEEE
Confidence 356889998 89999999999998884 2 445 466533
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.95 Score=48.01 Aligned_cols=180 Identities=18% Similarity=0.203 Sum_probs=100.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (818)
+++.+.++. ...+.++++-.- ....|... ..+-+.++-+.=+ +.++++||+.--| .|......+-.--
T Consensus 149 dai~evl~~------ds~iK~~F~tSP-gNPtg~~i-k~~di~KiLe~p~--nglVVvDEAYidF--sg~~S~~~lV~kY 216 (375)
T KOG0633|consen 149 DAIAEVLEL------DSKIKCIFLTSP-GNPTGSII-KEDDILKILEMPD--NGLVVVDEAYIDF--SGVESRMKLVKKY 216 (375)
T ss_pred HHHHHHHhc------cccceEEEEcCC-CCCCcccc-cHHHHHHHHhCCC--CcEEEEeeeeEee--ccccccchHhHhC
Confidence 455556642 346776666542 45566655 4445555555444 7899999998766 3433333332334
Q ss_pred CcEE---Eeccccc-CCccccceeecchHHHhhccCChH------------------------------HHH--HHHHHH
Q 003466 682 PDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSK------------------------------LWD--LELIQQ 725 (818)
Q Consensus 682 PDiv---tlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~~------------------------------~~~--~~l~~~ 725 (818)
|.++ ||||+.| .| +-+|..+.+.++++.+...-. +.+ .++...
T Consensus 217 pNLivlqTlSKsfGLAG-iRvG~~~~~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~ke 295 (375)
T KOG0633|consen 217 PNLIVLQTLSKSFGLAG-IRVGYGAFPLSIAEILNRAKAPYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKE 295 (375)
T ss_pred CceeehhhhhhhcCcce-eEeecccccHHHHHHHHhccCCccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 6765 7999887 45 677778888888775532100 111 234445
Q ss_pred HHcCCCeeEEEeeee---EEEEEEecCcccCCCchHHHHHHHHH-HHhCCceEeecC------CEEEEECCCCChHHHHH
Q 003466 726 ISSHRTVQRVVALGT---LCAIELQAAGCNAGYGSLYAASLLKK-LREDGVYMRPLG------NVIYLMCGPCSSPEVCS 795 (818)
Q Consensus 726 l~~~~~v~~vrg~Gl---~~~iel~~~~~~~~~~~~~a~~~~~~-l~e~Gvlv~p~g------~~ir~~ppl~~t~edId 795 (818)
+...+.+.+.-| |. ++-++.... +...+..+... +-..||.++-.| .-+|++. =|+||=+
T Consensus 296 Lt~v~~~~~~~g-g~daNFiLi~v~~~------~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitv---Gt~Eent 365 (375)
T KOG0633|consen 296 LTEVPFLNDYPG-GSDANFILIEVTGG------DNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITV---GTPEENT 365 (375)
T ss_pred hhcCccccCCCC-cccccEEEEEEcCC------CcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEc---CCcccch
Confidence 555555544221 22 333333321 12344444444 447899998643 4566654 3466667
Q ss_pred HHHHHHHHH
Q 003466 796 QLLLKLYQR 804 (818)
Q Consensus 796 ~~~~~l~~~ 804 (818)
.+++.|++.
T Consensus 366 vL~k~~K~~ 374 (375)
T KOG0633|consen 366 VLMKCLKQF 374 (375)
T ss_pred HHHHHHHhh
Confidence 777766554
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.5 Score=47.83 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=24.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+-|+|. .|+||||+...|++.|. ...+++.+.
T Consensus 106 ~v~l~G~-pGsGKTTLl~~l~~~l~------~~~~~~VI~ 138 (290)
T PRK10463 106 VLNLVSS-PGSGKTTLLTETLMRLK------DSVPCAVIE 138 (290)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhc------cCCCEEEEC
Confidence 3455555 89999999999999992 234666654
|
|
| >PRK05595 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.63 Score=54.01 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.|.|..+|+|||++++-++..+. . ++|.+|.+|=
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a---~-~~g~~vl~fS 237 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAA---L-REGKSVAIFS 237 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHH---H-HcCCcEEEEe
Confidence 45888899999999999999997542 2 6699999996
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=2.3 Score=48.17 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=27.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC-CceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g-~~v~~~K 78 (818)
...+.+.|. ||+||||+.+.|+..+. . +.| .+|+++-
T Consensus 137 g~ii~lvGp-tGvGKTTtiakLA~~~~---~-~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGP-TGVGKTTTTAKLAARCV---M-RFGASKVALLT 174 (374)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCCeEEEEe
Confidence 456888887 89999999999998763 2 445 4666554
|
|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.1 Score=52.35 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..++|.|..+|+|||++++-++..+. ++|.+|.+|=
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~-----~~g~~V~~fS 227 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKAL-----NQDKGVAFFS 227 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 34999999999999999999998773 6789999995
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.83 Score=52.76 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=30.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.|.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a---~-~~g~~vl~~S 231 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAA---I-KEGKPVAFFS 231 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH---H-hCCCeEEEEe
Confidence 34888888999999999999887652 2 4688899985
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.8 Score=53.66 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=30.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.|.+..+|+|||++++-++.... . +.|.+|.+|=
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a---~-~~g~~V~~fS 265 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAA---I-KSKKGVAVFS 265 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHH---H-hcCCceEEEe
Confidence 35889999999999999999997652 2 5688999995
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.63 E-value=6.1 Score=46.73 Aligned_cols=162 Identities=19% Similarity=0.152 Sum_probs=93.7
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (818)
+.+..|..|..++.++ .++.+|...|+.+---++-+|. ..+.+.|.++...|=+..
T Consensus 69 ~G~i~eAqe~aA~~fg---Ad~tyFvvNGTS~ank~vi~a~---------------------~~~GD~VLvdRN~HKSi~ 124 (557)
T COG1982 69 EGPIKEAQELAARVFG---ADHTYFVVNGTSTANKAVINAV---------------------LTPGDKVLVDRNCHKSIH 124 (557)
T ss_pred CccHHHHHHHHHHHhC---CCceEEEECCccHHHHHHHHhh---------------------cCCCCEEEecCCccHHHH
Confidence 3456677777777787 3677776666554444444441 234578999999999988
Q ss_pred ccccccCCC-CCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 522 GAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 522 ~als~tg~~-~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
.++-++|.. .|-.+ .. +..+. ++ .-+ +
T Consensus 125 ~glilaGa~Pvyl~p---------------~~----np~~g--i~---------------ggI--------~-------- 152 (557)
T COG1982 125 HGLILAGATPVYLEP---------------SR----NPLYG--II---------------GGI--------P-------- 152 (557)
T ss_pred HHHHHcCCceEEecC---------------CC----Ccccc--cc---------------CCC--------C--------
Confidence 888888743 22111 00 00000 00 000 0
Q ss_pred HHHHHHHHhcCCCCCCCCc-EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCc--ccCCccchhcc
Q 003466 601 SSYISQNLLQNPGLKVSGC-IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF--WRLGVETTADL 677 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~-iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGf--GRtG~~~a~e~ 677 (818)
.+.+++.+.+ ++.. -.+||+-|-+ .|+..- ++++++++.++++.+..||+| |+ +..+...- ..
T Consensus 153 ~~~~~~~l~~-----~~~~~k~~vitnpTY---dGv~~n----~~~i~~~~~~~~a~v~~deah-~~~~~~~~~l~~-~~ 218 (557)
T COG1982 153 LETFKEALLA-----HPDAEKLAVITNPTY---DGVCYN----LRKIVELLHHYGAWVLYDEAH-PAHFDFSPMLPE-SA 218 (557)
T ss_pred HHHHHHHHHh-----ChhhheeEEEecCcc---ceEeec----HHHHHHHHhhcCceEEhhhcC-cccccccccCcc-hh
Confidence 1334444442 3444 6799999975 345554 899999999999999999999 54 22222222 12
Q ss_pred cCCCCcEEEec--ccccC
Q 003466 678 LGCVPDIACYG--KLLTG 693 (818)
Q Consensus 678 ~gv~PDivtlg--KgLgg 693 (818)
..-..|++|-| |-|++
T Consensus 219 ~~~~~~~~tqS~HK~l~a 236 (557)
T COG1982 219 LNGGADFVTQSTHKLLAA 236 (557)
T ss_pred hhcCceEEEechhhhhhh
Confidence 22345777766 45554
|
|
| >PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.82 Score=53.88 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=29.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..++|.+..+|+|||++++-+++... . +.|.+|.+|=
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a---~-~~g~~v~~fS 301 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSAS---I-KHNKASVIFS 301 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCeEEEEE
Confidence 34888899999999999999987652 2 5688898884
|
|
| >PHA02542 41 41 helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.1 Score=52.28 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=36.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTK 96 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~ 96 (818)
..+.|.+..+|+|||++++-++.... ++|++|.+|= -+.+..+++.+.
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a-----~~g~~Vl~fS------LEM~~~ql~~Rl 237 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYL-----QQGYNVLYIS------MEMAEEVIAKRI 237 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHH-----hcCCcEEEEe------ccCCHHHHHHHH
Confidence 35889999999999999999998873 6799999995 233444555554
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=92.28 E-value=3.2 Score=42.80 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+-|+|. .|+||||+...|++.+
T Consensus 4 i~i~G~-~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 4 IGVAGP-VGSGKTALIEALTRAL 25 (199)
T ss_pred EEEECC-CCCCHHHHHHHHHHhh
Confidence 566665 8999999999999998
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 818 | ||||
| 4a0g_A | 831 | Structure Of Bifunctional Dapa Aminotransferase-Dtb | 0.0 | ||
| 4a0f_A | 831 | Structure Of Selenomethionine Substituted Bifunctio | 0.0 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 2e-26 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 8e-26 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 4e-25 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 6e-25 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 6e-25 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 1e-24 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 1e-24 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 1e-24 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 1e-23 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 1e-23 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 1e-23 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 8e-21 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 1e-20 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 4e-11 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 5e-11 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 7e-11 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 2e-10 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 2e-10 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 8e-08 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 5e-06 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 5e-06 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 7e-06 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 7e-06 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 1e-05 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 1e-05 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 1e-05 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 1e-05 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 1e-05 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 2e-05 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 2e-05 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 2e-05 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 2e-05 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 2e-05 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 3e-05 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 3e-05 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 4e-05 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 7e-05 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 7e-05 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 2e-04 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 2e-04 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 2e-04 | ||
| 3nui_A | 478 | Crystal Structure Of Omega-Transferase From Vibrio | 8e-04 | ||
| 4e3r_A | 473 | Plp-Bound Aminotransferase Mutant Crystal Structure | 9e-04 |
| >pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478 | Back alignment and structure |
|
| >pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 764 bits (1973), Expect = 0.0
Identities = 534/849 (62%), Positives = 627/849 (73%), Gaps = 67/849 (7%)
Query: 7 HHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP 66
HH+ H ++ R H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL
Sbjct: 4 HHHHHHSSGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQ 63
Query: 67 TSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKS 126
SS+ K +YLKPIQTG+P DSDSRF+F+KL SLSLRR P S + S
Sbjct: 64 PSSSATKLLYLKPIQTGFPSDSDSRFVFSKLDSLSLRRQIPIS-------------ISNS 110
Query: 127 FLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAER 186
L S + N E+ + N + + EL+CKTL+AWE A+SPHLAAER
Sbjct: 111 VLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTGAPELLCKTLYAWEAAISPHLAAER 170
Query: 187 ESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLY 246
E V DS V++ + KCL++ +E +SE+ ++LC+VETAGGVASPGPSG+LQCDLY
Sbjct: 171 E-NATVEDSVVLQMIEKCLKEEMECGVKSEKS--DLLCLVETAGGVASPGPSGTLQCDLY 227
Query: 247 RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVP 306
RPFRLPGILVGDGRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VP
Sbjct: 228 RPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVP 287
Query: 307 VLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFT 366
VLVLPP+P+D S+DL+EWF ES VF +LK M+LA ER++RL M K AGE+FWWPFT
Sbjct: 288 VLVLPPVPKDPSDDLIEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFT 347
Query: 367 QHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMG 426
QHKLV +E VTVIDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MG
Sbjct: 348 QHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMG 407
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
YTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF
Sbjct: 408 YTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFC 467
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
DH +F EK I +KV+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGL
Sbjct: 468 VDH----NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGL 523
Query: 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
FLDPPTVF+ N W +SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S+
Sbjct: 524 FLDPPTVFLSNGSWNISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSK 581
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
+L ++ G++ S +GALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGF
Sbjct: 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGF 641
Query: 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK---------- 716
WRLGVETT +LLGC PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 642 WRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSY 701
Query: 717 -----------------------------------LWDLELIQQISSHRTVQRVVALGTL 741
LWD EL+QQISSH VQRVV +GTL
Sbjct: 702 SAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTL 761
Query: 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKL 801
A+EL+A N+GY SLYA SLL LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KL
Sbjct: 762 FALELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKL 821
Query: 802 YQRLEEFDK 810
Y+RL EF++
Sbjct: 822 YKRLGEFNR 830
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 3e-66
Identities = 117/498 (23%), Positives = 176/498 (35%), Gaps = 138/498 (27%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--G---PDA 415
PFT V + S E + + + D +SWW G P
Sbjct: 13 ILHPFTSMTS--PLPVYPVVS--AEGCELILSDGRRLV----DGMSSWWAAIHGYNHP-- 62
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
+L M HVMF + PA+E L+ + + +D+GS A+E
Sbjct: 63 ----QLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVE 117
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-----S 530
+A+KMA + + G+ + L + YHGDT GAM P S
Sbjct: 118 VAMKMALQYWQA--------KGEARQ------RFLTFRNGYHGDTFGAMSVCDPDNSMHS 163
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
+ G+L + LF P M EW +E
Sbjct: 164 LWKGYLPE------NLFAPAPQSRMD--------GEW---------------------DE 188
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
RD A + +++ + I A+IIEP+V AGGM M P + + + K C
Sbjct: 189 RDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
I +I DE+ TGF R G + PDI C GK LTGG + L+ATL T V ++
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAET 295
Query: 711 FVGDS------------------------KLWD----LELIQQIS-----------SHRT 731
+ + + + I
Sbjct: 296 ISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEM 355
Query: 732 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP--CS 789
V V LG + +E A+L K E GV++RP G +IYLM P
Sbjct: 356 VADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWIRPFGKLIYLM--PPYII 405
Query: 790 SPEVCSQLLLKLYQRLEE 807
P+ +L + + +++
Sbjct: 406 LPQQLQRLTAAVNRAVQD 423
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 2e-64
Identities = 113/497 (22%), Positives = 179/497 (36%), Gaps = 127/497 (25%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--G---PDA 415
W P++ + V + G ++ +D + + DA +SWWT G P
Sbjct: 41 LWHPYSSIGR-EAVSPVVAVAAHGAWLTLIRDGQPIEV---LDAMSSWWTAIHGHGHP-- 94
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
L + + HVMF +EPA A+LL+ G +FSD+GS ++E
Sbjct: 95 ----ALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL-DTVFFSDSGSVSVE 149
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
+A KMA + + G+ K +++ +G YHGDT AM
Sbjct: 150 VAAKMALQYW----------RGRGLPGKR---RLMTWRGGYHGDTFLAMSIC-------- 188
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595
DP +S W L + F + Y+ S+
Sbjct: 189 -------------DPHGGM--HSLWTDVLAAQV-----------FAPQVPRDYDPAYSAA 222
Query: 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655
+ + + + + A+++EPVV AGGM DP + L C+ ++
Sbjct: 223 FEAQLAQHAGE-------------LAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEV 269
Query: 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+IFDE+ TGF R G AD G PDI C GK LTGG + LAATL T V + +
Sbjct: 270 LLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGA 329
Query: 716 ------------------------KLWD----LELIQQIS-----------SHRTVQRVV 736
+L I +++ + V V
Sbjct: 330 AGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVR 389
Query: 737 ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP--CSSPEVC 794
G + IE A + GV++RP N++Y M P +P
Sbjct: 390 VCGAIGVIECDRPV--------DLAVATPAALDRGVWLRPFRNLVYAM--PPYICTPAEI 439
Query: 795 SQLLLKLYQRLEEFDKV 811
+Q+ + + +
Sbjct: 440 TQITSAMVEVARLVGSL 456
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 9e-62
Identities = 115/513 (22%), Positives = 189/513 (36%), Gaps = 119/513 (23%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT- 410
D+ +++ + W PFTQ K +E +I+S G V ++ D +S W
Sbjct: 4 DLIEKSKKHLWLPFTQMK-DYDENPLIIES--GTGIKVKDINGKEYY----DGFSSVWLN 56
Query: 411 -QG---PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF 466
G EL + + H PA + AE L+ K +R ++
Sbjct: 57 VHGHRKK------ELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKK-LTRVFY 109
Query: 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
SD+G+ A+EIALKMAF+ + EK K +A+K YHGDT+GA+
Sbjct: 110 SDSGAEAMEIALKMAFQYW----------KNIGKPEKQ---KFIAMKNGYHGDTIGAVSV 156
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
LF + + + E I + R E
Sbjct: 157 ---------------GSIELF---------HHVYGPLMFE------SYKAPIPYVYRSES 186
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
+ + + ++ I AL IE +V A GM ++ + +
Sbjct: 187 GDPDECRDQCLRELAQLLEEH---------HEEIAALSIESMVQGASGMIVMPEGYLAGV 237
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C + +I DEV TGF R G + PD+ GK +TGG +P+A T AT
Sbjct: 238 RELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATED 297
Query: 707 VFDSFVGDS--------------------------KLWD----LELIQQIS--------- 727
++ +F D L++ +E + + S
Sbjct: 298 IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD 357
Query: 728 --SHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIY 782
+ V + LG +C EL + + K+RE G+ RPLG+VI
Sbjct: 358 LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIA 417
Query: 783 LMCGP--CSSPEVCSQLLLKLYQRLEEFDKVEE 813
+ P S+ E S+++ + Q + E +E+
Sbjct: 418 FL--PPLASTAEELSEMVAIMKQAIHEVTSLED 448
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 4e-34
Identities = 88/526 (16%), Positives = 156/526 (29%), Gaps = 169/526 (32%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-------- 412
W P+T ++ +I + E + D+ K D+ + WT G
Sbjct: 19 HWMPYTANRNF-LRDPRLIVA--AEGSWLVDDKGRKVY----DSLSGLWTCGAGHTRKEI 71
Query: 413 PDATLQIELARDMG----YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSD 468
+A +A+ + ++GH + + AE + + +F+D
Sbjct: 72 QEA-----VAKQLSTLDYSPGFQYGH--------PLSFQLAEKITDLTPGN-LNHVFFTD 117
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA-- 526
+GS A+KM + G+ K K++ YHG +
Sbjct: 118 SGSECALTAVKMVRAYW--------RLKGQ--ATKT---KMIGRARGYHGVNIAGTSLGG 164
Query: 527 --------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
P L + P ++L + L I H
Sbjct: 165 VNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG------GIALADELLKLIELHDAS 218
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
I A+ +EP+ + G+ +V
Sbjct: 219 N----------------------------------------IAAVFVEPLA-GSAGV-LV 236
Query: 639 DPL--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695
P +R +E C I ++FDEV TGF R G AD G PD+ C K +T G
Sbjct: 237 PPEGYLKRN--REICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGA 294
Query: 696 IPLAATLATNAVFDSFVGDSK-----------------------LWDLELIQQ------- 725
IP+ A +A+ ++ +F+ L L L+Q+
Sbjct: 295 IPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSV 354
Query: 726 -------------ISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV 772
I + V + G AI++ G + L + G
Sbjct: 355 AEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAP---RDGDAIVRPFEAGMALWKAGF 411
Query: 773 YMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
Y+R G+ + P ++ D++ + +
Sbjct: 412 YVRFGGDTLQFG--P---TFNSKP---------QDLDRLFDAVGEV 443
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-32
Identities = 83/515 (16%), Positives = 153/515 (29%), Gaps = 142/515 (27%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ----GPD-- 414
+ FT + + V+ GE + +++ DA + W
Sbjct: 29 SLYGFTDMPSLHQRGTVVVTH--GEGPYIVDVNGRRYL----DANSGLWNMVAGFDHKGL 82
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q + + +E L++ + R +++++
Sbjct: 83 IDAAKAQ---YERFPGYHAFFGRMS--------DQTVMLSEKLVEVSPFD-SGRVFYTNS 130
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529
GS A + +KM + GK +K K+L +YHG T +
Sbjct: 131 GSEANDTMVKMLWFLH--------AAEGK--PQK---RKILTRWNAYHGVTAVSASM--- 174
Query: 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589
TG +P+ +F P LP H +
Sbjct: 175 ---TG---KPY---NSVF-GLP------------LPG------FVHLTCPHY------WR 200
Query: 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH-MVDPLFQRILVK 648
+ + + + +++ L + + + I EPV+ AGG+ FQ I
Sbjct: 201 YGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVM-GAGGVIPPAKGYFQAI--L 257
Query: 649 E-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ IPVI DEV GF R G PD K LT G P+ A + +
Sbjct: 258 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPEL 317
Query: 708 FDSFVGDSKLWD------------------LELIQQISSHRTVQRVVALGT--------- 740
+ + L+ I + + + V L
Sbjct: 318 SKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHI 377
Query: 741 --------------LCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYL 783
+ A+E +A+ + + + G+ RPLG + L
Sbjct: 378 AERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVL 437
Query: 784 MCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
P P + ++ + D++ +KL+
Sbjct: 438 C--P---PFILTE---------AQMDEMFDKLEKA 458
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-30
Identities = 89/530 (16%), Positives = 150/530 (28%), Gaps = 173/530 (32%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT----QGPD-- 414
W + TV E V Q +++ D + W G
Sbjct: 20 VWHGMRPFS---PNSTTVGAK--AEGCWVEDIQGKRYL----DGMSGLWCVNSGYGRKEL 70
Query: 415 ---ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA---SRAYFSD 468
A Q + + Y H EPA++ AE L + W +FS+
Sbjct: 71 AEAAYKQ---LQTLSYFPMSQSH--------EPAIKLAEKLNE-----WLGGEYVIFFSN 114
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-----LGA 523
+GS A E A K+A + + G+ + K ++ YHG+T
Sbjct: 115 SGSEANETAFKIARQYY--------AQKGE--PHR---YKFMSRYRGYHGNTMATMAATG 161
Query: 524 MEA-----QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
+ + + P + + + + +
Sbjct: 162 QAQRRYQYEPFASGFLHVTPPDCYRMPGIERENI-------YDVECVKEVDRVMTWEL-- 212
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
E I A I+EP++ G +
Sbjct: 213 ----------SET----------------------------IAAFIMEPIITGGGILMAP 234
Query: 639 DPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697
+ + E CQ +I DEV GF R G PDI K +T +P
Sbjct: 235 QDYMKAV--HETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLP 292
Query: 698 LAATLATNAVFDSFVGDSKLWD-----------------LELIQQISSHRTVQRVVALGT 740
L+AT ++++F G + L+ ++ I + ++R +G+
Sbjct: 293 LSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGS 352
Query: 741 ------------------------LCAIELQA-AGCNAGYGSLYAASLLKKLREDGVYMR 775
L IEL + AS++ +E G+ +
Sbjct: 353 LLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIG 412
Query: 776 PLG-------NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
G N++ L P P V S EE V LK+
Sbjct: 413 RNGMTTAGYNNILTLA--P---PLVISS---------EEIAFVIGTLKTA 448
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 6e-28
Identities = 90/524 (17%), Positives = 154/524 (29%), Gaps = 162/524 (30%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
PFT + + V+ GE ++ + NK I D A W D
Sbjct: 18 HLHPFTDTASLNQAGARVMTR--GEGVYLWDSEGNKII----DGMAGLWCVNVGYGRKDF 71
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q ++ + T + H +E + LL + G R +++++
Sbjct: 72 AEAARRQ---MEELPFYNTFFKTTH--------PAVVELSSLLAEVTPAG-FDRVFYTNS 119
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--- 526
GS +++ ++M R + D GK EK ++ YHG T+G
Sbjct: 120 GSESVDTMIRMVRRYW--------DVQGK--PEKK---TLIGRWNGYHGSTIGGASLGGM 166
Query: 527 -------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579
P P ++QPW+ G + P + + WL KI+E
Sbjct: 167 KYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDE-------FGVVAARWLEEKILEIGADK 219
Query: 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639
+ A + EP+ AGG+ +V
Sbjct: 220 ----------------------------------------VAAFVGEPIQ-GAGGV-IVP 237
Query: 640 PL--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696
P + I + C+ + ++ DEV GF R G G PD+ K L+ G +
Sbjct: 238 PATYWPEI--ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYL 295
Query: 697 PLAATLATNAVFDSFVGDSKL--------------------------------------- 717
P+ A V + +
Sbjct: 296 PIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPY 355
Query: 718 WDLELIQQISSHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYM 774
+ S V V +G + A L +A + + M
Sbjct: 356 MQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIM 415
Query: 775 RPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
R G+ I + P V ++ E D++ + C
Sbjct: 416 RACGDHIVS-----APPLVMTR---------AEVDEMLAVAERC 445
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 4e-27
Identities = 89/522 (17%), Positives = 158/522 (30%), Gaps = 160/522 (30%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
PF+ + + EE VI + + + + DA A W +
Sbjct: 23 HLHPFSANNALGEEGTRVITR--ARGVWLNDSEGEEIL----DAMAGLWCVNIGYGRDEL 76
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q R++ Y T + H PA+ A+ L + + +F+
Sbjct: 77 AEVAARQ---MRELPYYNTFFKTTH--------VPAIALAQKLAELAPGD-LNHVFFAGG 124
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----- 524
GS A + ++M + G+ EK +++ K +YHG T+ +
Sbjct: 125 GSEANDTNIRMVRTYW--------QNKGQ--PEKT---VIISRKNAYHGSTVASSALGGM 171
Query: 525 ----EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
P + QP + G +DP + L+ L I+E +
Sbjct: 172 AGMHAQSGLIPDVHHINQPNWWAEGGDMDPEE-------FGLARARELEEAILELGENR- 223
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
+ A I EPV AGG+ +V P
Sbjct: 224 ---------------------------------------VAAFIAEPVQ-GAGGV-IVAP 242
Query: 641 L--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697
+ I + C I +I DEV GF R G +G P I K L+ G P
Sbjct: 243 DSYWPEI--QRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAP 300
Query: 698 LAATLATNAVFDSFVGDS---------------------------KLWD----------L 720
+ ++ + V D + D
Sbjct: 301 IGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLK 360
Query: 721 ELIQQISSHRTVQRVVALGTLCAIELQAAGCN----AGYGSLYAASLLKKLREDGVYMRP 776
E + ++ H V +G + +I L + A ++ + + MR
Sbjct: 361 EKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRH 420
Query: 777 LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
+G+ + + S P V + E D++ +++
Sbjct: 421 VGDRMII-----SPPLVITP---------AEIDEMFVRIRKS 448
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 96/520 (18%), Positives = 160/520 (30%), Gaps = 146/520 (28%)
Query: 361 FWWPFTQHK--LVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ----GPD 414
F+ P T E ++ GE +V+ + K I DA A + G
Sbjct: 17 FFHPSTHMGTHARGESPTRIMAG--GEGVTVWDNNGRKSI----DAFAGLYCVNVGYGRQ 70
Query: 415 -----ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467
Q A+++ Y G E ++ A++++ KG SR YF
Sbjct: 71 KIADAIATQ---AKNLAYYHAYVGHGT--------EASITLAKMIIDRAPKG-MSRVYFG 118
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
+GS A E +K+ + + LG+ EK K+++ YHG +
Sbjct: 119 LSGSDANETNIKLIWYYN--------NVLGR--PEKK---KIISRWRGYHGSGVMTGSL- 164
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
TG + F D P V H + +
Sbjct: 165 -----TG---LDLF--HNAF-DLP------------RAP------VLHTEAPYY------ 189
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM-VDPLFQRIL 646
+ D S +S + + L + + I A I EP++ GG+ +++I
Sbjct: 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPIL-GTGGIVPPPAGYWEKI- 247
Query: 647 VKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATN 705
+ + + ++ DEV TGF RLG +D G PD+ K LT PL+ + +
Sbjct: 248 -QAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVAD 306
Query: 706 AVFDSFVGDSKLWD------------------LELIQQISSHRTVQRVVALGT------- 740
V+ V S + ++ I V G
Sbjct: 307 RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELA 366
Query: 741 -----------------LCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYMR--PLG 778
L A+E + + L GV R P G
Sbjct: 367 KAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQG 426
Query: 779 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
+++ P P ++ E+ D V K
Sbjct: 427 DILGFA--P---PLCLTR---------EQADIVVSKTADA 452
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 2e-24
Identities = 85/526 (16%), Positives = 156/526 (29%), Gaps = 165/526 (31%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
P + + + A V+ E V+ + + I D A W +
Sbjct: 22 ILLPAQEMAKLGKSAQPVLTH--AEGIYVHTEDGRRLI----DGPAGMWCAQVGYGRREI 75
Query: 415 ---ATLQI-ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
Q L + PA AE + +R +F+ G
Sbjct: 76 VDAMAHQAMVLP---YASPWYMAT--------SPAARLAEKIATLTPGD-LNRIFFTTGG 123
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---- 526
STA++ AL+ + + LG+ +K +++ YHG T
Sbjct: 124 STAVDSALRFSEFYN--------NVLGR--PQKK---RIIVRYDGYHGSTALTAACTGRT 170
Query: 527 ------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
FL P ++ L + +I T
Sbjct: 171 GNWPNFDIAQDRISFLSSPNP-RHAGNRSQEA-------FLDDLVQEFEDRIESLGPDT- 221
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
I A + EP++ A+GG+ ++ P
Sbjct: 222 ---------------------------------------IAAFLAEPIL-ASGGV-IIPP 240
Query: 641 L--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTAD-LLGCVPDIACYGKLLTGGVI 696
R K C+ I I DEV TGF R G ++ + G VPDI + K +T G +
Sbjct: 241 AGYHARF--KAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV 298
Query: 697 PLAATLATNAVFDSFVGDSK---------------------LWDLELIQQ---------- 725
PL + AV G++ L ++EL+++
Sbjct: 299 PLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREM 358
Query: 726 ----------ISSHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLREDGV 772
+ V ++G + ++ + + ++ E G+
Sbjct: 359 ADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGL 418
Query: 773 YMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
+RPLG++ + S P + S+ + D++ ++
Sbjct: 419 IVRPLGDLCVI-----SPPLIISR---------AQIDEMVAIMRQA 450
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-23
Identities = 75/443 (16%), Positives = 123/443 (27%), Gaps = 133/443 (30%)
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
++F + E A L + VG R + GS A E A+K+A R++
Sbjct: 64 VHGSQFSS--------DVLEEYAGRLARFVGLPT-FRFWAVSGGSEATESAVKLA-RQY- 112
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
+ + + KV+ SYHG +LG++ A +G
Sbjct: 113 --------HVERGEPGRF---KVITRVPSYHGASLGSLAA------SG---MGARRELYT 152
Query: 547 FLDPPTVF-----MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601
L P + ++ E L + + T
Sbjct: 153 PLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPET---------------------- 190
Query: 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM-VDPLFQRILVKE-CQNRKIPVIF 659
+ A + EPVV A+ ++R+ ++ C I I
Sbjct: 191 ------------------VAAFMAEPVVGASDAALAPAPGYYERV--RDICDEAGIIFIA 230
Query: 660 DEVFTGFWRLGVETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLW 718
DEV +G R G G PDIA GK L G PLA LA V+++ +G S +
Sbjct: 231 DEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAF 290
Query: 719 D---------------LELIQQISSHRTVQRVVALGT----------------------- 740
L ++ + G
Sbjct: 291 MHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTG 350
Query: 741 -LCAIELQAAGCNAGYGSL-YAASLLKKLREDGVYMRPLGNVIYLMCGP---CSSPEVCS 795
L + L + + A+ + + G+ P G P +
Sbjct: 351 LLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSIT 410
Query: 796 QLLLKLYQRLEEFDKVEEKLKSC 818
E D + L
Sbjct: 411 A---------AEVDGLLALLAGA 424
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 5e-22
Identities = 60/293 (20%), Positives = 101/293 (34%), Gaps = 81/293 (27%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A + H +F E + P ++ A L G RA G+ + E A++MA + +
Sbjct: 72 AGKLDH-LFSEMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMA-KLVT-- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
GK +++ S+HG T A A T G G
Sbjct: 127 --------GKY--------EIVGFAQSWHGMTGAAASA------TY---SAGRKGVGPA- 160
Query: 549 DPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602
F Y ++ ++ + E+ Y +S
Sbjct: 161 -AVGSFAIPAPFTYRPRF--------------ERNGAYDYLAELDYAFDLIDRQSS---- 201
Query: 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV 662
G + A I EP++ ++GG+ + + L ++C+ R + +I DE
Sbjct: 202 ---------------GNLAAFIAEPIL-SSGGIIELPDGYMAALKRKCEARGMLLILDEA 245
Query: 663 FTGFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
TG R G + G PDI K L G +PLAA + + A+ +
Sbjct: 246 QTGVGRTGTMFACQRD----GVTPDILTLSKTLGAG-LPLAAIVTSAAIEERA 293
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Length = 224 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 7e-22
Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 23/171 (13%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R S + V + + E SPH+ + +E G +S V+ + L +
Sbjct: 60 RNSSLQLDY--ATVN--PYTFAEPTSPHIISAQE--GRPIESLVMSAGLRALEQQAD--- 110
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+VE AGG +P D +LP ILV +LG I+ + +
Sbjct: 111 ---------WVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQV 161
Query: 274 LKLRGYDVVAVVF--EDHGLVNEVPLMSYLRNR--VPVL-VLPPLPQDSSN 319
++ G + V M+ L P+L +P L ++ N
Sbjct: 162 IQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPEN 212
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Length = 224 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
+ + +T +GKT+ S L + +A + KP+ +G +
Sbjct: 3 RYFVTGTDTEVGKTVASCALLQAA-----KAAGYRTAGYKPVASGSEKTPE 48
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Length = 228 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 27/184 (14%), Positives = 66/184 (35%), Gaps = 26/184 (14%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
+ ++ + L ++ +AV+PH+ A + IE L + + D +
Sbjct: 61 NAYKHKFTA--AEIN--LISFNQAVAPHIIAAKT-----KVDISIENLKQFIEDKYNQDL 111
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+ + +E AGG+ +P + Q DL + ++P +LV ++G I+ T+
Sbjct: 112 D--------ILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINE 163
Query: 274 LKLRGYDVVAVVF--EDHGLVNEVPLMSYLRNR--VPVL-VLPPLPQDSS----NDLMEW 324
L + + D + ++ + + + ++
Sbjct: 164 LNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSAKISRNADYLDFIDLSKILIS 223
Query: 325 FDES 328
+E+
Sbjct: 224 PEEN 227
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Length = 228 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
F I +T +GKT +S L N K + LKP+ +G S+
Sbjct: 6 KFFIIGTDTEVGKTYISTKLIEVC-----EHQNIKSLCLKPVASGQSQFSE 51
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 2e-21
Identities = 56/291 (19%), Positives = 97/291 (33%), Gaps = 69/291 (23%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
+ H + P LE A+ L+ + + +FS++G+ AIE ++K+ +
Sbjct: 72 MQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV-KN---- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPY-TGFLQQPWYSGRGL 546
T + ++A G +HG T G++ A + + P+
Sbjct: 127 ------------TGRK---YIIAFLGGFHGRTFGSISLTASKAVQRSIV--GPF------ 163
Query: 547 FLDPPTVFM--YNSKWILSLPEWLYSKIVEHKDITFCS-RDEIFYEERDSSDLASIYSSY 603
P V Y + + Y E + D IF ++A
Sbjct: 164 ---MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVA------ 214
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF 663
+ EP + GG + F L K + I ++ DEV
Sbjct: 215 ------------------GIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQ 255
Query: 664 TGFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G R G +E VPD+ K L GG++P+ AT+ +
Sbjct: 256 MGLGRTGKLFAIEN----FNTVPDVITLAKALGGGIMPIGATIFRKDLDFK 302
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 3e-20
Identities = 61/289 (21%), Positives = 97/289 (33%), Gaps = 67/289 (23%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
F H F YE + E L + R+ ++GS A+E A+K+A R +
Sbjct: 90 VGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIA-RSHT-- 146
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
K V+A +YHG T M T + Y G
Sbjct: 147 --------HKP--------AVVAFDHAYHGRTNLTMAL------TA--KVMPYK-DGFGP 181
Query: 549 DPPTVFM--YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
P ++ + + + + E + + ++ + +LA
Sbjct: 182 FAPEIYRAPLSYPFRDAEFGKELATDGE---LAAKRAITVIDKQIGADNLA--------- 229
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
A++IEP+ GG + F L+ C+ + I DEV TGF
Sbjct: 230 ---------------AVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF 273
Query: 667 WRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
R G E G PD+ K + GG+ PL+A + DS
Sbjct: 274 ARTGAMFACEH----EGIDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSP 317
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 4e-20
Identities = 70/291 (24%), Positives = 97/291 (33%), Gaps = 76/291 (26%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A F H F YE ++ AELL R ++G+ A+E A+K+A R +
Sbjct: 93 ATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVA-RLAT-- 149
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPY-TGFLQQPWYSG--R 544
G+ V+A +YHG T M A PY + F P+ R
Sbjct: 150 --------GRP--------AVVAFDNAYHGRTNLTMALTAKSMPYKSQF--GPFAPEVYR 191
Query: 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
P + L+ E I + + LA
Sbjct: 192 MPASYP-----LRDEPGLTGEEAARRAI------------SRIETQIGAQSLA------- 227
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
A+IIEP+ GG + P F L + I DEV T
Sbjct: 228 -----------------AIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT 269
Query: 665 GFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
GF R G E G VPDI K + GG +PL+A + D+
Sbjct: 270 GFARTGAWFASEH----EGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAV 315
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 5e-20
Identities = 71/287 (24%), Positives = 103/287 (35%), Gaps = 71/287 (24%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
+ H F YEP LE E++ Q V +A + GS A+E A+K+A R +
Sbjct: 70 LKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAAT-- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ +A G+YHG T + TG + YS G+ L
Sbjct: 127 --------KRS--------GTIAFSGAYHGRTHYTLAL------TG--KVNPYS-AGMGL 161
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ P L+ + S IF + D+A
Sbjct: 162 MPGHVYR------ALYPCPLHGISEDD---AIASIHRIFKNDAAPEDIA----------- 201
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
A++IEPV GG + P F + L C I +I DEV +G R
Sbjct: 202 -------------AIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 247
Query: 669 LG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G +E +G PD+ + K + GG PLA V D+
Sbjct: 248 TGTLFAMEQ----MGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAV 289
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 8e-20
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 25/178 (14%)
Query: 161 SSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKM 220
+ V++L L + + ++P AAE G+ ++ + + + + D L+
Sbjct: 82 AGVTQLAG--LARYPQPMAPAAAAEHA--GMALPAR--DQIVRLIAD-LDRPGR------ 128
Query: 221 EILCIVETAGGVASP-GPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279
L +VE AGG+ G D+ ++V LG ++ T E+L +
Sbjct: 129 --LTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQV 186
Query: 280 DVVAVVF----EDHGLVNE-----VPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDES 328
+V + GLV + ++ +R +P D + FD +
Sbjct: 187 SCAGLVIGSWPDPPGLVAASNRSALARIAMVRAALPAGAASLDAGDFAAMSAAAFDRN 244
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 27 HPQPLDLPLSH--------PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78
H L + + T +GKT+V A L+S+ A K
Sbjct: 8 HHHSSGLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAA-----RQAGIDVAVCK 62
Query: 79 PIQTGYPHDSD 89
P+QTG D
Sbjct: 63 PVQTGTARGDD 73
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-19
Identities = 60/293 (20%), Positives = 84/293 (28%), Gaps = 79/293 (26%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
AA PA+ AE LL + +F +GS A E A + K +
Sbjct: 72 AANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI-VKAT-- 128
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLF 547
G+ V+A G+YHG T+G+M
Sbjct: 129 --------GRS--------GVIAFAGAYHGCTVGSMAFSGHSVQADAAK----------- 161
Query: 548 LDPPTVF--MYNSKWILSLPEWLYSKIVEHKDITFCSRD-EIFYEERDSSDLASIYSSYI 604
+ Y Y + +
Sbjct: 162 --ADGLILLPYPDP---------YRPYRNDPTGDAILTLLTEKLAAVPAGSIG------- 203
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
A IEP+ + GG+ + F R C+ I V+ DEV
Sbjct: 204 -----------------AAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV 245
Query: 665 GFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713
G R G E G VPDI GK L GG +PL+A +A + D
Sbjct: 246 GLARSGRLHCFEH----EGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA 293
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A Length = 242 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 1e-18
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 18/158 (11%)
Query: 172 FAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGG 231
+ + + +P +A + E D + L + L + + L IVE AGG
Sbjct: 95 YRYHKVSAPLIAQQEEDPNAPID---TDNLTQRLHN-FTKTYD--------LVIVEGAGG 142
Query: 232 VASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVF----E 287
+ P D + +L+ LG I+ + LK D +
Sbjct: 143 LCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNN 202
Query: 288 DHGLVNEVPLMSYLRNR--VPVLVLPPLPQDSSNDLME 323
+P + R P+++ + + ++
Sbjct: 203 TAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK 240
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 2e-18
Identities = 52/293 (17%), Positives = 85/293 (29%), Gaps = 61/293 (20%)
Query: 429 AARFGHVMFP---ENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK 484
A + +VY E + +G +F + G+ A+E ALK A
Sbjct: 83 AELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAA-FD 141
Query: 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544
+ H + + +VL L+G++HG + + T +P + R
Sbjct: 142 WKSRHN------QAHGIDPALGTQVLHLRGAFHGRSGYTLSL------TN--TKPTITAR 187
Query: 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
D P + P DE ++ L
Sbjct: 188 FPKFDWP---------RIDAPYMRP------------GLDEPAMAALEAEALRQA----- 221
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
+ + + + EP + GG P F + + C +IFDEV T
Sbjct: 222 -RAAFETRPHDI----ACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT 275
Query: 665 GFWRLGVETTADL-----LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
G T L PDI +GK + + A V
Sbjct: 276 GCGL-----TGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAV 323
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 8e-16
Identities = 70/413 (16%), Positives = 117/413 (28%), Gaps = 103/413 (24%)
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALE-CAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
++L + + E +E E LL KG S+ GS + E A
Sbjct: 85 VKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENA 143
Query: 478 LKMAF-------RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530
K F R S + ++ + C + +L+ G++HG T+G +
Sbjct: 144 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLAT---- 199
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
T + + D P K+ L ++ E + + D I
Sbjct: 200 --TH--SKAIHKIDIPSFDWPIAPFPRLKYPLEEFVK-ENQQEEARCLEE-VEDLIVKYR 253
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
+ +A +I+EP + + GG + F R L
Sbjct: 254 KKKKTVA------------------------GIIVEP-IQSEGGDNHASDDFFRKLRDIS 288
Query: 651 QNRKIPVIFDEVFTGFWR---------LGVETTADLLGCVPDIACYGK-LLTGGVI---- 696
+ + DEV TG G++ D+ + K ++TGG
Sbjct: 289 RKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD-------PADVMTFSKKMMTGGFFHKEE 341
Query: 697 ----------------PLAATLATNAVFDSF-----------VGDSKLWDLELIQQISSH 729
P L V + G L L +Q
Sbjct: 342 FRPNAPYRIFNTWLGDPSKNLLL-AEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQ 400
Query: 730 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVI 781
+ RV GT C+ + L+ R GV + G I
Sbjct: 401 F-ISRVRGRGTFCSFDTPDES--------IRNKLISIARNKGVMLGGCGDKSI 444
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ A+++EP+ G +V+P F + + VI+DEV T F R DL
Sbjct: 203 VAAILVEPI---VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDL 258
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK++ GG +P+ A
Sbjct: 259 LGVTPDLTALGKVIGGG-LPIGA 280
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ +I+EPV AG M+ + PL F L C +I DEV TGF R+ + D
Sbjct: 201 VACIIVEPV---AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
+PD+ C GK++ GG +P+ A
Sbjct: 257 YHVIPDLTCLGKIIGGG-MPVGA 278
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EP+ G + P F L + ++FDEV TGF R+ +
Sbjct: 200 IAGVILEPI---VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEK 255
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 256 FGVTPDLTTLGKIIGGG-LPVGA 277
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A I EPV + F R + + I DEV +GF R+G L
Sbjct: 202 IAAFIAEPV---GSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQAL 257
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
L PD+ C K GG +P
Sbjct: 258 LDVQPDLTCLAKASAGG-LPGGI 279
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F L + + +IFDEV TGF R+
Sbjct: 201 IACVIVEPV---AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ C GK++ GG +P+ A
Sbjct: 257 YGVTPDLTCLGKVIGGG-LPVGA 278
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I EPV G ++ P F + L E + + +I DEV TGF RL +L
Sbjct: 200 IAAIIFEPV---VGNAGVLVPTEDFLKAL-HEAKAYGVLLIADEVMTGF-RLAFGGATEL 254
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK+L GG +P AA
Sbjct: 255 LGLKPDLVTLGKILGGG-LPAAA 276
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV ++ P F L + + +I DEV TGF RLG+E
Sbjct: 204 IAGVIVEPV---IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGY 259
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
DI GK++ GG P+ A
Sbjct: 260 FNIEGDIIVLGKIIGGG-FPVGA 281
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
A+++EP+ G V F +L E +IFDEV T RL ++
Sbjct: 234 CAAILVEPM---LGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS--RLSGGGAQEM 288
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG D+ GK + GG + A
Sbjct: 289 LGISADLTTLGKYIGGG-MSFGA 310
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A I+EP+ G+++ F + ++ C+ + + DE+ TG R T +
Sbjct: 183 TAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGR-----TGKVFA 236
Query: 680 C-----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
C PD+ GK L GGV P++ A + F
Sbjct: 237 CDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVF 273
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+++EP+ GG+ P F + L C + ++FDEV G R G
Sbjct: 197 VMDDHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG---- 251
Query: 675 ADL-----LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
DL G PDI K L GG P++A L T + +F VG
Sbjct: 252 -DLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGS 295
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
H NV+ EPAL L + +A R F ++G+ A E A K+A R ++
Sbjct: 86 GETLWHT---SNVFTNEPALRLGRKL---IDATFAERVLFMNSGTEANETAFKLA-RHYA 138
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ + K K++A ++HG +L + Y+ GF
Sbjct: 139 CV---------RHSPFKT---KIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680
A I+EP+ G+ + + + + C+ + + DEV TG R T LL
Sbjct: 215 AFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGR-----TGKLLCVH 268
Query: 681 ----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PD+ GK L+GG P++A LA + +
Sbjct: 269 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVI 303
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 5e-08
Identities = 97/575 (16%), Positives = 163/575 (28%), Gaps = 171/575 (29%)
Query: 289 HGLVNEVPLMSY-LRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERI 347
H + E Y ++ + V + FD V D K+I+ + I
Sbjct: 5 HHMDFETGEHQYQYKDILSVF-EDAFVDN--------FDCKD-VQDMPKSILSKEEIDHI 54
Query: 348 QRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKN-KFIGQQFDACA 406
D LFW ++ EE V + F + N KF+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSK----QEEMV--------QKFVEEVLRINYKFLMSPI---- 98
Query: 407 SWWTQGPDA-TLQIELARDMGYTAARFGHVMFPENVY--EPALECAELLLQ--------- 454
+ P T RD Y V NV +P L+ + LL+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 455 ----GVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
G GK W A S ++ KM F+ F + L + + + +
Sbjct: 156 DGVLGSGKTWVALDVCLSY------KVQCKMDFKIFWLN-------LKNCNSPETVLEML 202
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY-NSKWILSLPE-W 567
L Y D + S + R L P Y N +L L
Sbjct: 203 QKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENC--LLVLLNVQ 254
Query: 568 LYSKIVEHKDITFC-----SRD-------------EIFYEERDSS----DLASIYSSYIS 605
+K +++ C +R I + + ++ S+ Y+
Sbjct: 255 -NAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 606 --------QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657
+ L NP ++S I I + + H+ I+ + N P
Sbjct: 313 CRPQDLPREVLTTNP-RRLSI-IAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPA 369
Query: 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV-IPLAATLATNAVFDSFVGDSK 716
+ ++ F RL V P IP L S
Sbjct: 370 EYRKM---FDRLSV---------FPP----------SAHIP-TILL------------SL 394
Query: 717 LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 776
+W ++I+ V VV L+ SL++K ++ P
Sbjct: 395 IWF-DVIKS-----DVMVVVN-------------------KLHKYSLVEKQPKESTISIP 429
Query: 777 LGNVIYL-MCGPCSSPEVCSQLLLKLYQRLEEFDK 810
IYL + + + ++ Y + FD
Sbjct: 430 S---IYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 4e-07
Identities = 80/583 (13%), Positives = 162/583 (27%), Gaps = 165/583 (28%)
Query: 141 NSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIET 200
+ E + ++ ++ +S ED+ V CK + ++ L+ E E ++ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKSILSKE-EIDHIIMSKDAVSG 63
Query: 201 LGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCD---LYRPFRLPGILVG 257
L L S+ E +V+ L+ + L P +
Sbjct: 64 T-LRLFWTLLSKQEE---------MVQKFVE-------EVLRINYKFLMSPIKT------ 100
Query: 258 DGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDS 317
S Y + R Y+ V + + V+ + LR L +
Sbjct: 101 --EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQA--------LLELR 148
Query: 318 SNDL-----MEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVP 372
+ ++ D + ++Q C M ++FW
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLS-------YKVQ--CKMD---FKIFW---------- 186
Query: 373 EEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432
+ + C +V + + + Q D WT D + I+L R
Sbjct: 187 ---LNL--KNCNSPETVLEMLQK--LLYQID---PNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 433 GHVMFPENVYEPALECAELLLQGVGKGWASRA--YF---------------SDNGSTAIE 475
+ YE L L+L V ++A F +D S A
Sbjct: 237 ---LLKSKPYENCL----LVLLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS-YHGDTLGAMEAQAPSPYTG 534
+ + + + + L K + +L L + + + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 535 FLQQPWYSGRGL---------FLDPP---------TVFMYNSKWILSLPE------WLYS 570
+ + L L+P +VF ++ +P W
Sbjct: 347 WKH---VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDV 399
Query: 571 KIVEHKDIT--FCSRDEIFYEERDSSDLA-SIYSSYISQNLLQNPGLKVSGCIGALIIEP 627
+ + + E+ + SI S Y+ ++ E
Sbjct: 400 IKSDVMVVVNKLHKYSLV---EKQPKESTISIPSIYLE-LKVKLEN------------EY 443
Query: 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
+H + +VD I + IP D+ F + +G
Sbjct: 444 ALHRS----IVDHY--NIPKTFDSDDLIPPYLDQYF--YSHIG 478
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 5e-04
Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 59/202 (29%)
Query: 2 LRLRRH--HYPDHHRRIL-----LRLFHHSTFHPQPLDLPL-SHPTFQIWSANTSLGKTL 53
L L+ + HR I+ + F P LD SH +G L
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-----------IGHHL 481
Query: 54 VSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILS 113
+ L V+L D RFL K+ S N S++
Sbjct: 482 KNIEHPERMTLFRM-------VFL-----------DFRFLEQKIRHDSTAWNASGSIL-- 521
Query: 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFA 173
N L K ++ D P + N+ + L EEN I + ++L+
Sbjct: 522 N--TLQQLKFYKPYICDND-PKYERLVNAILDFLPKIEENLICSKY----TDLL------ 568
Query: 174 WEEAVSPHLAAERESGGVVGDS 195
+A E + ++
Sbjct: 569 -------RIALMAEDEAIFEEA 583
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A ++EP+ G+ + DP + + + C ++ I DE+ TG R G D
Sbjct: 224 VAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN 282
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PDI GK L+GG+ P++A L + + +
Sbjct: 283 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 314
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
+IIE + GG++ F L + C+ + + +I DEV TG R G +
Sbjct: 175 GIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-----EFYAYQ 228
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
PD+ K L GGV P+ A LA V SF G
Sbjct: 229 HFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGS 266
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
+ HV N+Y E A L++ + +F+++G+ ++E A+K+A RK+
Sbjct: 57 VEKLLHV---SNLYENPWQEELAHKLVKHFW--TEGKVFFANSGTESVEAAIKLA-RKYW 110
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
D GK+ + ++ + S+HG T G++ A + GF
Sbjct: 111 RDK-------GKNKWK------FISFENSFHGRTYGSLSATGQPKFHKGF 147
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N+Y E A+ L R +F+++G+ +IE A+K A RK++F+ G
Sbjct: 73 NLYYNENIAAAAKNL---AKASALERVFFTNSGTESIEGAMKTA-RKYAFNK-------G 121
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ +A K S+HG TLGA+ A Y F
Sbjct: 122 VKGGQ------FIAFKHSFHGRTLGALSLTANEKYQKPF 154
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 8e-07
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
A+I+E V GG++ + F + L K C + I +I DE+ G R +
Sbjct: 182 AIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR-----SGKFFAYE 235
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+PDI K L G+ + A + V
Sbjct: 236 HAQILPDIMTSAKALGCGL-SVGAFVINQKV 265
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N++ P +E AELL + + +F++ G+ A E A+K+A RK+
Sbjct: 77 NLFWNRPQMELAELL---SKNTFGGKVFFANTGTEANEAAIKIA-RKYGKKK-------S 125
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ +L+ S+HG TLG++ A Y F
Sbjct: 126 EKKYR------ILSAHNSFHGRTLGSLTATGQPKYQKPF 158
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 8e-07
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
A+ +EP+ G+ F K C ++FDEV G R G L
Sbjct: 186 AVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-----KLFAYQ 239
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAV 707
G VPD+ K L GGV P+ A +
Sbjct: 240 KYGVVPDVLTTAKGLGGGV-PIGAVIVNERA 269
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 25/100 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + E L + +R + ++G+ A E ALK A R +
Sbjct: 74 AETLMAM---PQTLPTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKFA-RAHT 128
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
+ + A + G T+G++
Sbjct: 129 GRKKFV------------------AAMRGFSGRTMGSLSV 150
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680
A+I+EPV GG+ P F R + Q + +I DE+ TG R G
Sbjct: 188 AVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-----KRFAFE 241
Query: 681 ----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
VPDI K L GGV PL + V S
Sbjct: 242 HFGIVPDILTLAKALGGGV-PLGVAVMREEVARSM 275
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 818 | |||
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 3qxc_A | 242 | Dethiobiotin synthetase; DTBS, structural genomics | 100.0 | |
| 3of5_A | 228 | Dethiobiotin synthetase; structural genomics, cent | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.96 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.94 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.94 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.94 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.93 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.92 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.9 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.89 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.87 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.87 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.86 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.86 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.86 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.85 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 99.85 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.84 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.84 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.84 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.84 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.83 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.83 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.83 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.83 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.82 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.71 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.82 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.81 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.81 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.81 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.81 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.81 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.81 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.81 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.8 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.8 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.8 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.8 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.8 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.8 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.79 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.79 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.79 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.79 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.79 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.79 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.79 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.78 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.78 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.78 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.77 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.77 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.77 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.77 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.76 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.76 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.76 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.76 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.75 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.75 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.75 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.75 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.74 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.74 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.73 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.73 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.73 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.73 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.73 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.72 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.72 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.72 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.72 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.71 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.71 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.71 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.7 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.7 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.7 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.7 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.7 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.7 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.7 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.7 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.68 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.67 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.67 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.67 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.67 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.66 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 99.66 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.66 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.65 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.65 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.65 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.65 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.65 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.64 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.64 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.64 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.64 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.64 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.63 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.63 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.63 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.63 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.63 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.63 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.63 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.63 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.63 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.62 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.62 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.62 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.61 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.61 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.61 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.61 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.6 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.6 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.59 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.59 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.59 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.58 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.58 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.58 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.57 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.57 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.57 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.55 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.55 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.55 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.55 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.55 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.53 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.53 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.52 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.52 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.52 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.51 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.51 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.51 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.5 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.48 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.48 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.46 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.46 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.44 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.43 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.41 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.41 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.41 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.41 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.4 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.39 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.38 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.36 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.35 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.34 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.34 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.33 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.32 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.3 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.29 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.29 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.21 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.2 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.2 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.2 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 99.18 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.18 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.16 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.15 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.12 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.09 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.07 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.05 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.04 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.0 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.0 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 98.93 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.93 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 98.92 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 98.91 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 98.89 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 98.87 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 98.86 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 98.84 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 98.82 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 98.77 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 98.74 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 98.72 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 98.72 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 98.7 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 98.61 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 98.59 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 98.59 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 98.54 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 98.53 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 98.51 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 98.44 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 98.42 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 98.41 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 98.39 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 98.37 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 98.35 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.28 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 98.27 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 98.24 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 98.22 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 98.18 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 98.17 | |
| 2woo_A | 329 | ATPase GET3; tail-anchored, membrane protein, targ | 98.17 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.11 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 98.08 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 98.05 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 98.02 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 98.0 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 97.99 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.98 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 97.94 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 97.89 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 97.86 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 97.79 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 97.73 | |
| 3igf_A | 374 | ALL4481 protein; two-domained protein consisting o | 97.72 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 97.71 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.66 | |
| 2woj_A | 354 | ATPase GET3; tail-anchored, membrane protein, targ | 97.49 | |
| 3iqw_A | 334 | Tail-anchored protein targeting factor GET3; ATPas | 97.49 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 97.33 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 97.25 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.22 | |
| 3io3_A | 348 | DEHA2D07832P; chaperone, membrane traffic, ATPase; | 97.07 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.02 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 96.99 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 96.84 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.73 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.45 | |
| 3pg5_A | 361 | Uncharacterized protein; structural genomics, PSI- | 96.3 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.27 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.2 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.14 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 96.08 | |
| 3ez9_A | 403 | Para; DNA binding, winged-HTH, partition, biosynth | 95.75 | |
| 3ez2_A | 398 | Plasmid partition protein A; type IA, DNA binding, | 95.43 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 94.19 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 94.06 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 92.56 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.37 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 92.35 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 92.32 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.91 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 91.23 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 90.69 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 88.65 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 88.37 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 87.47 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 85.43 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 84.8 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 84.46 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 84.31 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 84.14 | |
| 3nva_A | 535 | CTP synthase; rossman fold, nucleotide binding, LI | 84.12 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 83.68 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 83.3 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 83.29 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 82.52 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 82.19 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 82.18 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 81.66 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 81.12 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 81.03 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 80.86 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 80.7 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 80.11 |
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-116 Score=1069.08 Aligned_cols=755 Identities=70% Similarity=1.170 Sum_probs=600.9
Q ss_pred CCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-----CCceeEEceeccCCCCCCchHHHHHhccCCc
Q 003466 27 HPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-----NKKFVYLKPIQTGYPHDSDSRFLFTKLPSLS 101 (818)
Q Consensus 27 ~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~-----g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~ 101 (818)
-+.|+.++.++++|||+||+||||||+||+|||++|+ ++ |.+|+|||||++|+..++|..++++.++++.
T Consensus 24 ~~~~~~~~~~~~~l~I~gt~s~vGKT~vt~gL~r~l~-----~~~~~~~G~~V~~fKPv~~g~~~~~~~~~~~~~~~~~~ 98 (831)
T 4a0g_A 24 SVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFL-----LQQPSSSATKLLYLKPIQTGFPSDSDSRFVFSKLDSLS 98 (831)
T ss_dssp ---CCEEECSSCEEEEEESSSSSCHHHHHHHHHHHHH-----SCSSCCTTCEEEEEEEEECSTTTCCHHHHHHHHHHHHH
T ss_pred CCCCccCccccccEEEEECCCCCCHHHHHHHHHHHHH-----hcccccCCceEEEEcccccCCCcCcchHHHHHhhcccc
Confidence 3445567788999999999999999999999999995 77 9999999999999888888888888765543
Q ss_pred cccCCCcccccccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChH
Q 003466 102 LRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPH 181 (818)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 181 (818)
.+|+ ....++|..+......+.....+++..++++ .+++.++++++. ....+.+.++|.|++|+|||
T Consensus 99 ~~n~--da~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~sp~ 165 (831)
T 4a0g_A 99 LRRQ--IPISISNSVLHSSLPAAKSLGLNVEVSESGM------CSLNFRDEKTVT-----GAPELLCKTLYAWEAAISPH 165 (831)
T ss_dssp HHHT--CCCEEEEEEEEEEHHHHHHHTCCCCBCTTSE------EEEEEEEEECCT-----TSCEEEEEEEEECSSSSCHH
T ss_pred ccch--hHHHHHHHHcCCChhhHhhcccCCcccCCce------Eeeccccccccc-----ccccccccceeeecCCcCHH
Confidence 3332 2233444444333333332333444444442 223333333332 33457789999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCC
Q 003466 182 LAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRL 261 (818)
Q Consensus 182 ~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~ 261 (818)
++++.+ +..+..+.|.+.|.+..++. ++.+......+|++|||||||+++|+..+.+++|||+.+++|||||+++++
T Consensus 166 ~aa~~~-~~~~~~~~i~~~~~~~l~~~--a~~~~~~~~~~D~vvVEGaGGl~~p~~~~~~~adla~~l~~PVILV~d~~l 242 (831)
T 4a0g_A 166 LAAERE-NATVEDSVVLQMIEKCLKEE--MECGVKSEKSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRL 242 (831)
T ss_dssp HHHHHT-TCCCCHHHHHHHHHHHHHHH--C---------CEEEEEECCSSTTCBCTTSCBHHHHTGGGCCCEEEECCCST
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHhh--hhccccccccCCEEEEECCCCccCCCCCCccHHHHHHHcCCCEEEEECCCC
Confidence 999999 88899999999999844320 000000001389999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCCEEecCCCCCCCcchhhhhhhhhhhhHHHHHHHHHH
Q 003466 262 GGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLL 341 (818)
Q Consensus 262 g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlgiP~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~ 341 (818)
|++|++++++++++.++++|+|||+|+....+.+.+.+++++++||..||++|.+...+|.+|++.....++.+++.+..
T Consensus 243 G~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~~~~l~~~l~~~~~v~vLg~lP~~~~~~l~~~~~~~~~~~~~~~~~l~~ 322 (831)
T 4a0g_A 243 GGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESDGVFKALKETMVL 322 (831)
T ss_dssp THHHHHHHHHHHHHTTTCCEEEEEEECCSSCTHHHHHHHTTTSSCEEEECCCCCCTTCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEEEeCCchhHHHHHHHHHHhCCCceeeCCCCCCCHHHHHHHHhhcchhHHHHHHHHHH
Confidence 99999999999999999999999999998899999999886545554444444455578999999988889999999999
Q ss_pred HHHHHHHhhccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHH
Q 003466 342 AYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIEL 421 (818)
Q Consensus 342 ~~~~r~~~~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V 421 (818)
.+.+|++++++|.+++++++|||||+++.+....|++|++++|.++|+||.|||.++++|||++|||||+++||+.||+|
T Consensus 323 ~~~~r~~~l~~~~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i 402 (831)
T 4a0g_A 323 ANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAEL 402 (831)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHH
Confidence 99999999999999999999999999987755678999999999999999999866678999999999999999879999
Q ss_pred HHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCcc
Q 003466 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (818)
Q Consensus 422 ~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~ 501 (818)
++|+++|++++.|+++.+++++++.+|||+|++++|.+++++|||+||||||||+|||+|+|+|++++|+.. .+..
T Consensus 403 ~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~----~~~~ 478 (831)
T 4a0g_A 403 AREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCE----ATEE 478 (831)
T ss_dssp HHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC----------
T ss_pred HHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCc----cccc
Confidence 999999999999987777889999999999999998665789999999999999999999777877665400 0000
Q ss_pred ccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccccccc
Q 003466 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFC 581 (818)
Q Consensus 502 ~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~n 581 (818)
..++|.+||+++++|||+|++++++|+...|+..++.+|+.+.++++++|...+.+++++++.|++|+.. ..++.+|+
T Consensus 479 ~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~--~~~~~~~~ 556 (831)
T 4a0g_A 479 EKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEI--APEYGTFT 556 (831)
T ss_dssp ---CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCC--CSSTTEES
T ss_pred cccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcccccc--cccccccc
Confidence 1136889999999999999999999998877764346777777777777776666778889999877532 12233567
Q ss_pred CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEee
Q 003466 582 SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDE 661 (818)
Q Consensus 582 d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DE 661 (818)
|.++.|....+.+.+...|.+.|++.|++.+...+++++||||+|||+||+||++++|++||++|+++|++||++||+||
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DE 636 (831)
T 4a0g_A 557 SRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDE 636 (831)
T ss_dssp CHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEEC
T ss_pred chhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 65555544344455667788889988864211134689999999997699999999999999999999999999999999
Q ss_pred cccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh------H-------------------
Q 003466 662 VFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS------K------------------- 716 (818)
Q Consensus 662 V~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~------~------------------- 716 (818)
|+|||||||++|+++++||.|||+|+||+|||||+|+|++++++++++.|.... +
T Consensus 637 V~tGfGRtG~~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~ 716 (831)
T 4a0g_A 637 VFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQ 716 (831)
T ss_dssp TTTTTTTTSBSSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHH
T ss_pred CccccccCCCchhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999886532 0
Q ss_pred HH--------------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee
Q 003466 717 LW--------------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 776 (818)
Q Consensus 717 ~~--------------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p 776 (818)
++ .+.+.+.+.+++.|.+|||.|+|+++++..+.....++...+..+++.|+++||+++|
T Consensus 717 ~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p 796 (831)
T 4a0g_A 717 WFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRP 796 (831)
T ss_dssp HHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEe
Confidence 11 1134456678899999999999999999865333334445678899999999999999
Q ss_pred cCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 777 LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 777 ~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+++|||+||+++|++|||+++++|+++++++
T Consensus 797 ~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 797 LGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp BTTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988654
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-75 Score=668.34 Aligned_cols=401 Identities=17% Similarity=0.208 Sum_probs=334.8
Q ss_pred hccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhh
Q 003466 350 LCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (818)
Q Consensus 350 ~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~ 429 (818)
.+.+.+++..++|||||+++.+.+..|++|++++|. ||||.||| +|||+++|||++++||+ ||+|++|+++|+
T Consensus 24 ~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~ 96 (473)
T 4e3q_A 24 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGP--YIVDVNGR----RYLDANSGLWNMVAGFD-HKGLIDAAKAQY 96 (473)
T ss_dssp CCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETT--EEEETTCC----EEEETTTTTTTCTTCSC-CHHHHHHHHHHH
T ss_pred cccHHHHHhhhcCCCCCChhhhccCCCEEEEeeecC--EEEeCCCC----EEEEcccCHHHhhccCC-CHHHHHHHHHHH
Confidence 345678888999999999987666789999999997 79999999 99999999999999999 999999999999
Q ss_pred hhccccc-CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceE
Q 003466 430 ARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (818)
Q Consensus 430 ~~~~~~~-~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~ 508 (818)
+++.+.. +.+..+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++|.+
T Consensus 97 ~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGsEA~e~AiKlA-r~~~~~~g~------------~~r~~ 162 (473)
T 4e3q_A 97 ERFPGYHAFFGRMSDQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVKML-WFLHAAEGK------------PQKRK 162 (473)
T ss_dssp HHCCCCCCCTTEEEHHHHHHHHHHHHHSSCS-SCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCE
T ss_pred HhcccccccccccCHHHHHHHHHHHhhCCCC-ccEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCcce
Confidence 9987653 34557899999999999999865 789999999999999999999 777777665 78899
Q ss_pred EEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhh
Q 003466 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (818)
Q Consensus 509 II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~ 588 (818)
||+|+++|||+|.+++++++... +.. +.+|. ++..+++.|++++. ++.
T Consensus 163 ii~~~~~yHG~t~~a~s~tg~~~-~~~------------~~~~~----~~~~~~~~p~~~~~----------~~~----- 210 (473)
T 4e3q_A 163 ILTRWNAYHGVTAVSASMTGKPY-NSV------------FGLPL----PGFVHLTCPHYWRY----------GEE----- 210 (473)
T ss_dssp EEEETTCCCCSSHHHHHHSCCGG-GGG------------GTCSC----TTEEEECCCCHHHH----------SCT-----
T ss_pred EEEeeceECCCcccccccccccc-ccc------------cCCCC----CcccccCCCccccc----------ccc-----
Confidence 99999999999999999998642 221 11111 34567788877753 111
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCccc
Q 003466 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (818)
Q Consensus 589 ~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR 668 (818)
...++.+...+.+.+++.+.+ .+++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||
T Consensus 211 -~~~~~~~~~~~~~~l~~~i~~----~~~~~iAavi~EPi-qg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGR 284 (473)
T 4e3q_A 211 -GETEEQFVARLARELEETIQR----EGADTIAGFFAEPV-MGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGR 284 (473)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSST
T ss_pred -cchhhHHHHHHHHHHHHHHHh----hCCCceEEEEeCCc-cCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCc
Confidence 112234455556777777765 56789999999998 999999999999999999999999999999999999999
Q ss_pred CCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh-------H-------------------------
Q 003466 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-------K------------------------- 716 (818)
Q Consensus 669 tG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~-------~------------------------- 716 (818)
||++|+++++||+|||+|+||+|||||+|+||+++++++++.+.... +
T Consensus 285 tG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~ 364 (473)
T 4e3q_A 285 TGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEG 364 (473)
T ss_dssp TSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSS
T ss_pred ccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999998763210 0
Q ss_pred ----------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC---chHHHHHHHHHHHhCCceEeecCCEEEE
Q 003466 717 ----------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY---GSLYAASLLKKLREDGVYMRPLGNVIYL 783 (818)
Q Consensus 717 ----------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~---~~~~a~~~~~~l~e~Gvlv~p~g~~ir~ 783 (818)
++.++ ++.+.+++.|.+|||.|+|++++++.+.....+ +...+..+.+.|+++||++++.|++++|
T Consensus 365 l~~~~~~~g~~l~~~-L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~i~l 443 (473)
T 4e3q_A 365 LAENVRRLAPRFEER-LKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVL 443 (473)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEETTEEEE
T ss_pred HHHHHHHHHHHHHHH-HHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEecCCEEEE
Confidence 11122 234556788999999999999999877543222 2345778999999999999999999999
Q ss_pred ECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 784 MCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 784 ~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.||+++|++|||+++++|+++|+++.+
T Consensus 444 ~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 444 CPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988653
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-68 Score=612.00 Aligned_cols=365 Identities=23% Similarity=0.237 Sum_probs=296.7
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++|++++.|..+....+++..+|+|+|++
T Consensus 46 ~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~ 118 (456)
T 4atq_A 46 VPVYVEDADGG--IIRDVDGN----SFIDLGSGIAVTSVGAS-DPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNR 118 (456)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCCeEEeeecC--EEEeCCCC----EEEEccccHHHHhcCCC-CHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHH
Confidence 46789999997 79999999 99999999999999999 9999999999999998877666778999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC-CC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~-~~ 533 (818)
++|.+.+++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++... ++
T Consensus 119 ~~p~~~~~~v~f~~sGsEA~e~AlklA-r~~t~r------------------~~ii~~~~~yHG~t~~als~t~~~~~~~ 179 (456)
T 4atq_A 119 LTPGDHAKRTVLFNSGAEAVENAVKVA-RLATGR------------------DAVVAFDHAYHGRTNLTMALTAKAMPYK 179 (456)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCCCCCcEEEEeCChHHHHHHHHHHH-hhhhcC------------------CeEEEEecccCCccccccccccCccccc
Confidence 987655789999999999999999999 788764 5999999999999999999998653 22
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .++ ..+++.+++.|++++.. .++ ....+....+.+.+++.
T Consensus 180 ~~--------~~p--------~~~~~~~~p~~~~~~~~--------~~~--------~~~~~~~~~~~~~~e~~------ 221 (456)
T 4atq_A 180 TN--------FGP--------FAPEVYRMPMSYPFREE--------NPE--------ITGAEAAKRAITMIEKQ------ 221 (456)
T ss_dssp TT--------SCS--------CCSSEEEECCCCGGGCS--------STT--------CCHHHHHHHHHHHHHHH------
T ss_pred cC--------CCC--------ccccceecccccccccC--------CCc--------ccHHHHHHHHHHHHHHh------
Confidence 21 111 11345566666655321 000 01111222222333322
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+||++++|||+|||+|+||++||
T Consensus 222 -~~~~~iAAvivEPi-qg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lgg 299 (456)
T 4atq_A 222 -IGGDQVAAIIIEPI-QGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAG 299 (456)
T ss_dssp -TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGT
T ss_pred -hcCCceEEEEeccc-cCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccC
Confidence 34679999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-------------------H----------------HHHHHHHHHHc-----CCCee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-------------------L----------------WDLELIQQISS-----HRTVQ 733 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-------------------~----------------~~~~l~~~l~~-----~~~v~ 733 (818)
| +|+||+++++++++.+....+ + +.+++.+..++ ++.|+
T Consensus 300 g-~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~ 378 (456)
T 4atq_A 300 G-LPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVG 378 (456)
T ss_dssp T-SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEE
T ss_pred c-CCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceE
Confidence 9 699999999999998864322 1 11222233333 46799
Q ss_pred EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 734 ~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+|||.|+|++|+++.+. ...++...+..+.+.|+++||++.+. +++|||.||+++|++|||+++++|+++|++
T Consensus 379 ~VRG~Gl~~giel~~~~-~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 379 DIRGRGAMLAIELVQPG-SKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp EEEEETTEEEEEEBCTT-SCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeeecceEEEEEEecCC-CCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999998764 33456677888999999999999864 589999999999999999999999999875
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-62 Score=560.53 Aligned_cols=381 Identities=16% Similarity=0.163 Sum_probs=309.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeeccccccc
Q 003466 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (818)
Q Consensus 331 ~l~~l~~~l~~~~~~r~~~~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~ 410 (818)
.+++.+....++|.++.++++++.+++.+++..-.+....+-...|+++++++|. ||||.||| +|||+++|||+
T Consensus 25 ~~~~~~~~~~~~~~~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~ 98 (454)
T 4ao9_A 25 AIDQALADAYRRFTDANPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGA--ALWDADGH----RYADFIAEYTA 98 (454)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETT--EEEETTCC----EEEESSGGGGT
T ss_pred hhhhhHHHHHHHHhhcCcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecC--EEEECCCC----EEEEccccHHh
Confidence 3455566667789999999999999998887543222111112458899999997 79999999 99999999999
Q ss_pred ccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 411 ~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
+++||+ ||+|++|+++|+++..+.. ..++...+|+++|++.++. +++|+|+|||+||||+|||+| |.||+|
T Consensus 99 ~~lGH~-hp~v~~Av~~q~~~~~~~~---~~~~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~AiklA-r~~tgr-- 169 (454)
T 4ao9_A 99 GVYGHS-APEIRDAVIEAMQGGINLT---GHNLLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTAA-LHFTGR-- 169 (454)
T ss_dssp TTTCSC-CHHHHHHHHHHHHTCSCCC---SEESSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHTC--
T ss_pred hcccCC-CHHHHHHHHHHHhcCCCcc---CCcHHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHHH-HhcccC--
Confidence 999999 9999999999999876543 4577889999999999874 799999999999999999999 888765
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
.+||+|+++|||+|.++++.++....... ...
T Consensus 170 ----------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~~-------------------------~~~------- 201 (454)
T 4ao9_A 170 ----------------RKIVVFSGGYHGGVLGFGARPSPTTVPFD-------------------------FLV------- 201 (454)
T ss_dssp ----------------CEEEEETTCBCSTTCBBSSSBCTTSCCSE-------------------------EEE-------
T ss_pred ----------------CeEEEEeCCcCCccccccccccCccCCCC-------------------------ccc-------
Confidence 58999999999999887776643321110 011
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
++|||. +.+++.|++ +++++||||+||| |+++|+++|+++||++||++|
T Consensus 202 -------~p~nd~------------------~~l~~~l~~-----~~~~iAavIvEPv-~g~~G~~~p~~~fL~~lr~lc 250 (454)
T 4ao9_A 202 -------LPYNDA------------------QTARAQIER-----HGPEIAVVLVEPM-QGASGCIPGQPDFLQALRESA 250 (454)
T ss_dssp -------ECTTCH------------------HHHHHHHHH-----TGGGEEEEEECSE-ESTTTCEECCHHHHHHHHHHH
T ss_pred -------CCCchH------------------HHHHHHHhh-----cCCceEEEEeccc-cCCCCccCCchhhHHHHHHHH
Confidence 126663 567777773 4678999999998 999999999999999999999
Q ss_pred HhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH--------------
Q 003466 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-------------- 716 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-------------- 716 (818)
++||++||+||||| ||||++|+++++||+|||+|+||+|||| +|+||+++++++++.+.....
T Consensus 251 ~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla 327 (454)
T 4ao9_A 251 TQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMT 327 (454)
T ss_dssp HHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHH
T ss_pred hhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhhccCCccccCCCCCCHHH
Confidence 99999999999999 5999999999999999999999999999 699999999999998864211
Q ss_pred -------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCccc-----CCCchHHHHHHHHH
Q 003466 717 -------------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKK 766 (818)
Q Consensus 717 -------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~ 766 (818)
++.+++.+..++++.+.+|||.|+|++++|.+.... ...+......++..
T Consensus 328 ~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ 407 (454)
T 4ao9_A 328 MAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFH 407 (454)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHH
Confidence 222334444567888999999999999999765311 11234566778899
Q ss_pred HHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 767 LREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 767 l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
|+++||++.|.++ +.+++.||++|||+++++|+++|.++.+.
T Consensus 408 ll~~Gv~~~p~~~---~~~s~~~T~~dId~~l~al~~~l~~~~a~ 449 (454)
T 4ao9_A 408 LLNEDIYSSPRGF---VVLSLPLTDADIDRYVAAIGSFIGGHGAL 449 (454)
T ss_dssp HHHTTEECCTTCE---EECCTTCCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHCCEEEcCCCC---EEEeCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998774 45777899999999999999999887543
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-59 Score=537.73 Aligned_cols=401 Identities=19% Similarity=0.215 Sum_probs=325.5
Q ss_pred hccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhh
Q 003466 350 LCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (818)
Q Consensus 350 ~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~ 429 (818)
+.++.+++++++||||++++.+....|+++++++|. ++||.||+ +||||+|++|++++||+ ||+|++|+++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~G~----~ylD~~s~~~~~~lGh~-~p~v~~A~~~~l 83 (476)
T 3i5t_A 11 AGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGI--YVHTEDGR----RLIDGPAGMWCAQVGYG-RREIVDAMAHQA 83 (476)
T ss_dssp --CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHH
T ss_pred chHHHhhcccccccCcccccccccCCCeeEEEeecC--EEEECCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHH
Confidence 446777888899999999887765678999999997 69999999 99999999999999999 999999999999
Q ss_pred hhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEE
Q 003466 430 ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509 (818)
Q Consensus 430 ~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~I 509 (818)
+++.+.....+.+++..+|+++|++.++.+ .++|+|++||+|||+.|||++ +.++..+|+ ++|.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Aik~a-~~~~~~~g~------------~~~~~v 149 (476)
T 3i5t_A 84 MVLPYASPWYMATSPAARLAEKIATLTPGD-LNRIFFTTGGSTAVDSALRFS-EFYNNVLGR------------PQKKRI 149 (476)
T ss_dssp HHCCCCCTTTCBCHHHHHHHHHHHTTSSTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEE
T ss_pred HhccCcccCccCCHHHHHHHHHHHhcCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCEE
Confidence 998765433577999999999999998744 689999999999999999999 555445554 667899
Q ss_pred EEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhc
Q 003466 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589 (818)
Q Consensus 510 I~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~ 589 (818)
|+++++|||.+.+++++++.+.++..+ .++ .++..+++.|..+++ +++
T Consensus 150 i~~~~~yHg~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~p~~~~~---------~~~------- 197 (476)
T 3i5t_A 150 IVRYDGYHGSTALTAACTGRTGNWPNF------------DIA----QDRISFLSSPNPRHA---------GNR------- 197 (476)
T ss_dssp EEETTCCCCSSHHHHHTCCCGGGCTTS------------CCC----CTTEEEECCCCGGGC---------TTS-------
T ss_pred EEEcCCcCcCChhhccccCChhhcccc------------CCC----CCCcEEeCCCccccc---------CCC-------
Confidence 999999999999999999877655431 111 134456666765531 111
Q ss_pred ccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccC
Q 003466 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669 (818)
Q Consensus 590 ~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRt 669 (818)
+.+.+...+.+.|++.+++ .+++++++||+||+ ++++|+++++++||++|+++|++||++||+|||||||||+
T Consensus 198 --~~~~~~~~~~~~le~~i~~----~~~~~~aavi~ep~-~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~ 270 (476)
T 3i5t_A 198 --SQEAFLDDLVQEFEDRIES----LGPDTIAAFLAEPI-LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC 270 (476)
T ss_dssp --CHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred --chHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc
Confidence 2234455556888888864 23468999999998 9999999999999999999999999999999999999999
Q ss_pred Cccchhc-ccCCCCcEEEecccccCCccccceeecchHHHhhccCCh----------H----------------HHH---
Q 003466 670 GVETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS----------K----------------LWD--- 719 (818)
Q Consensus 670 G~~~a~e-~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~----------~----------------~~~--- 719 (818)
|++|+++ ++|+.||++|+||+|||||+|+|++++++++++.+.... . .+.
T Consensus 271 G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~ 350 (476)
T 3i5t_A 271 GEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREG 350 (476)
T ss_dssp SSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred cCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHH
Confidence 9999999 999999999999999999899999999999999876420 0 000
Q ss_pred ---------HHHHHHH---HcCCCeeEEEeeeeEEEEEEecCcccCC-Cc--hHHHHHHHHHHHhCCceEeecCCEEEEE
Q 003466 720 ---------LELIQQI---SSHRTVQRVVALGTLCAIELQAAGCNAG-YG--SLYAASLLKKLREDGVYMRPLGNVIYLM 784 (818)
Q Consensus 720 ---------~~l~~~l---~~~~~v~~vrg~Gl~~~iel~~~~~~~~-~~--~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ 784 (818)
+.+.+.+ ..++.+..+++.|+++++++..+..... +. ...+..+++.|+++||++++.|+.+|++
T Consensus 351 ~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~ 430 (476)
T 3i5t_A 351 IVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCVIS 430 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEETTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEecCCEEEEE
Confidence 1122333 3467789999999999999976521111 11 1246778999999999999988999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 785 CGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 785 ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
||+++|+++|++++++|+++++++.+
T Consensus 431 p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 431 PPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988753
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-59 Score=538.98 Aligned_cols=396 Identities=18% Similarity=0.266 Sum_probs=321.4
Q ss_pred hhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc
Q 003466 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~ 433 (818)
.+++.+++||||+++..+....|+++++++|. ++||.||| +||||+||+|++++||+ ||+|++|+++|++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~l~d~~G~----~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~~~~ 88 (472)
T 3hmu_A 16 QALDAAHHLHPFSANNALGEEGTRVITRARGV--WLNDSEGE----EILDAMAGLWCVNIGYG-RDELAEVAARQMRELP 88 (472)
T ss_dssp HHHHHHHEECTTEEHHHHHHHCCEEEEEEEBT--EEEETTCC----EEECTTHHHHTCTTCBC-CHHHHHHHHHHHHHCS
T ss_pred HHHHHhhccCCcccccccccCCCeeEEEeecC--EEEECCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHHHhcc
Confidence 45566789999998765433468899999997 69999999 99999999999999999 9999999999999987
Q ss_pred c-ccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 434 H-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 434 ~-~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
+ .++..+.+++..+|+++|+++.|.+ .++|+|+|||+|||+.|+|++ +.|++.+|. +++.+||++
T Consensus 89 ~~~~~~~~~~~~~~~lae~l~~~~~~~-~~~v~~~~sGseA~~~aik~a-~~~~~~~g~------------~~~~~ii~~ 154 (472)
T 3hmu_A 89 YYNTFFKTTHVPAIALAQKLAELAPGD-LNHVFFAGGGSEANDTNIRMV-RTYWQNKGQ------------PEKTVIISR 154 (472)
T ss_dssp CCCSSSSEECHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred ccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEE
Confidence 3 3344567899999999999998644 579999999999999999999 777766654 667899999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+++|||.+.+++++++.+.++..| . + .++..+++.|.+|+ +|+. .+
T Consensus 155 ~~~yHg~t~~~~~~~~~~~~~~~~------------~-~----~~~~~~v~~p~~~~----------~~~~-------~~ 200 (472)
T 3hmu_A 155 KNAYHGSTVASSALGGMAGMHAQS------------G-L----IPDVHHINQPNWWA----------EGGD-------MD 200 (472)
T ss_dssp TTCCCCSSHHHHHHSCCHHHHHTT------------C-C----CSSEEEECCCCHHH----------HCTT-------CC
T ss_pred cCcCCCccHHhhhccCChhhcccc------------C-C----CCCcEEeCCCcccc----------CCcc-------cC
Confidence 999999999999999876554431 1 0 12445677776654 2220 12
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
.+.+...+.+.|++.|.+ .+++++++||+||+ +++||++++|++||++|+++|++||++||+|||||||||+|++
T Consensus 201 ~~~~~~~~~~~le~~i~~----~~~~~~aavi~epv-~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~ 275 (472)
T 3hmu_A 201 PEEFGLARARELEEAILE----LGENRVAAFIAEPV-QGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNW 275 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCcc
Confidence 234445556888888864 23468999999998 9999999999999999999999999999999999999999999
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC------hH---------------HH---------H---
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD------SK---------------LW---------D--- 719 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~------~~---------------~~---------~--- 719 (818)
|+++++|+.||++||||+|||||+|+|++++++++++.+... .. .+ .
T Consensus 276 ~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~ 355 (472)
T 3hmu_A 276 FGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVA 355 (472)
T ss_dssp CHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTH
T ss_pred chhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999989999999999999887311 00 00 0
Q ss_pred -HHHHHH---HHcCCCeeEEEeeeeEEEEEEecCcccCCC---c-hHHHHHHHHHHHhCCceEeecCCEEEEECCCCChH
Q 003466 720 -LELIQQ---ISSHRTVQRVVALGTLCAIELQAAGCNAGY---G-SLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSP 791 (818)
Q Consensus 720 -~~l~~~---l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~---~-~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~ 791 (818)
+.+.+. +..++.+.++|+.|+++++++..+.....+ . ...+..+++.|+++||++++.|+.+||+||+++|+
T Consensus 356 ~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~p~~~~t~ 435 (472)
T 3hmu_A 356 APYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITP 435 (472)
T ss_dssp HHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEETTEEEECCCTTCCH
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCH
Confidence 112222 334678999999999999999754221111 1 34577889999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003466 792 EVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 792 edId~~~~~l~~~l~~l~ 809 (818)
+||++++++|+++++++.
T Consensus 436 e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 436 AEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998875
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-56 Score=505.51 Aligned_cols=400 Identities=17% Similarity=0.239 Sum_probs=305.5
Q ss_pred cchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhh
Q 003466 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (818)
Q Consensus 352 ~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~ 431 (818)
++.+++.+++||||+++..+....|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+.+|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~ 81 (459)
T 4a6r_A 9 QWRELDAAHHLHPFTDTASLNQAGARVMTRGEGV--YLWDSEGN----KIIDGMAGLWCVNVGYG-RKDFAEAARRQMEE 81 (459)
T ss_dssp -------------------------CCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCccccccccccCCeeEEEeecC--EEEECCCC----EEEECCCchhcccCCCC-CHHHHHHHHHHHHh
Confidence 4667788999999999887655678899999997 69999999 99999999999999999 99999999999998
Q ss_pred cc-cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEE
Q 003466 432 FG-HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (818)
Q Consensus 432 ~~-~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II 510 (818)
+. +.....+.++...+|+++|++.++.+ .++|+|++||+|||+.|+|++ +.+++.+|. +++.+||
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~ggseA~~~al~~~-~~~~~~~g~------------~~~~~vi 147 (459)
T 4a6r_A 82 LPFYNTFFKTTHPAVVELSSLLAEVTPAG-FDRVFYTNSGSESVDTMIRMV-RRYWDVQGK------------PEKKTLI 147 (459)
T ss_dssp CSCCCTTSSSCCHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEE
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCEEE
Confidence 76 33334567899999999999988644 589999999999999999999 666665554 5678999
Q ss_pred EEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcc
Q 003466 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (818)
Q Consensus 511 ~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~ 590 (818)
+++++|||.+.+++++++...++..| .+ ...+..+++.|.+|++ ++.
T Consensus 148 ~~~~~yhg~~~~~~~~~~~~~~~~~~------------~~----~~~~~~~~~~p~~~~~----------~~~------- 194 (459)
T 4a6r_A 148 GRWNGYHGSTIGGASLGGMKYMHEQG------------DL----PIPGMAHIEQPWWYKH----------GKD------- 194 (459)
T ss_dssp EETTCCCCSSHHHHHHSCCTTTC---------------CC----SCSSEEEECCCCHHHH----------CTT-------
T ss_pred EECCCcCCccHHHHhhcCChhhcccc------------CC----CCCCCEEeCCCccccC----------Ccc-------
Confidence 99999999999999999877655431 01 0124456777766642 210
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC
Q 003466 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (818)
Q Consensus 591 ~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG 670 (818)
.+.+.+...+.+.|++.+.+ .+++++++||+||+ ++++|++++|++|+++|+++|++||++||+|||||||||+|
T Consensus 195 ~d~~~~~~~~~~~le~~i~~----~~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G 269 (459)
T 4a6r_A 195 MTPDEFGVVAARWLEEKILE----IGADKVAAFVGEPI-QGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG 269 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cCHHHHHHHHHHHHHHHHHH----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 12234444556788888864 23468999999997 99999999999999999999999999999999999999999
Q ss_pred ccchhcccCCCCcEEEecccccCCccccceeecchHHHhhcc---CChH-------------------H---------HH
Q 003466 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV---GDSK-------------------L---------WD 719 (818)
Q Consensus 671 ~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~---~~~~-------------------~---------~~ 719 (818)
++|+++++++.||++||||+||||++|+|++++++++++.+. .... . ..
T Consensus 270 ~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 349 (459)
T 4a6r_A 270 EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVK 349 (459)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999999999999899999999999998775 2111 0 01
Q ss_pred --------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC---CCchHHHHHHHHHHHhCCceEeecCCEEEEECCCC
Q 003466 720 --------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNA---GYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPC 788 (818)
Q Consensus 720 --------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~---~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~ 788 (818)
+.+.+.+..++.+..+++.|+++++++..+.... .+....+..+++.|+++||++++.|+.+|++||++
T Consensus 350 ~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~~~~~ 429 (459)
T 4a6r_A 350 DDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVSAPPLV 429 (459)
T ss_dssp HTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEETTEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCCCEEEEECCCC
Confidence 1111344567889999999999999997543211 12334577889999999999999889999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 003466 789 SSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 789 ~t~edId~~~~~l~~~l~~l~~ 810 (818)
+|++|+++++++|+++++++.+
T Consensus 430 ~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 430 MTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988753
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-56 Score=506.80 Aligned_cols=400 Identities=19% Similarity=0.260 Sum_probs=321.5
Q ss_pred cchhhhcCccccccCCCCCCCCC--CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhh
Q 003466 352 DMPKRAGELFWWPFTQHKLVPEE--AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (818)
Q Consensus 352 ~l~~~~~~~~~~p~t~~~~~~~~--~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~ 429 (818)
++.+.+.+++||||++++.+... .|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+.+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~G~----~~lD~~~~~~~~~lG~~-~p~v~~A~~~~~ 80 (460)
T 3gju_A 8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGV--TVWDNNGR----KSIDAFAGLYCVNVGYG-RQKIADAIATQA 80 (460)
T ss_dssp CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHH
T ss_pred HHHHhhhcccccCccccccccccCCCceEEEEeecc--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHH
Confidence 45667778999999987543212 34889999997 69999999 99999999999999999 999999999999
Q ss_pred hhccc-ccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceE
Q 003466 430 ARFGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (818)
Q Consensus 430 ~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~ 508 (818)
+++.+ .....+.++...+|+++|+++++.+ .++|+|++||+|||+.|+|++ +.+++.+|+ +++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~gGseA~~~al~~~-~~~~~~~g~------------~~~~~ 146 (460)
T 3gju_A 81 KNLAYYHAYVGHGTEASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLI-WYYNNVLGR------------PEKKK 146 (460)
T ss_dssp HHHSCCCCCTTCCCHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCE
T ss_pred HhccccccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCE
Confidence 98763 3334567889999999999987643 579999999999999999999 667666554 56789
Q ss_pred EEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhh
Q 003466 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (818)
Q Consensus 509 II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~ 588 (818)
||+++++|||.+.+++++++...++..| .+. ..+..+++.|.+|+ +||.
T Consensus 147 vi~~~~~yhg~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~p~~~~----------~~~~----- 195 (460)
T 3gju_A 147 IISRWRGYHGSGVMTGSLTGLDLFHNAF------------DLP----RAPVLHTEAPYYFR----------RTDR----- 195 (460)
T ss_dssp EEEETTCCCCSSHHHHHHCCCGGGTTTT------------TCS----CTTEEEECCCCGGG----------CSCT-----
T ss_pred EEEECCCcCCCCHHHhhccCCccccccc------------CCC----CCCCEEeCCCcccc----------CCcc-----
Confidence 9999999999999999999876655431 111 12445677776664 2321
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCccc
Q 003466 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (818)
Q Consensus 589 ~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR 668 (818)
..+.+.+...+.+.|++.+.+ .+++++++||+||+ ++++|+++++++|+++|+++|++||++||+|||+|||||
T Consensus 196 -g~~~~~~~~~~~~~le~~i~~----~~~~~~aaii~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 269 (460)
T 3gju_A 196 -SMSEEQFSQHCADKLEEMILA----EGPETIAAFIGEPI-LGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269 (460)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred -ccChhHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 011233444556788888864 23468999999998 999999999999999999999999999999999999999
Q ss_pred CCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC----------ChH----------------------
Q 003466 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG----------DSK---------------------- 716 (818)
Q Consensus 669 tG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~----------~~~---------------------- 716 (818)
+|++|+++++|+.||++||||+|||||+|+|++++++++++.+.. ...
T Consensus 270 ~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 349 (460)
T 3gju_A 270 LGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMD 349 (460)
T ss_dssp TSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred ccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998899999999999988731 100
Q ss_pred ----------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC-C--CchHHHHHHHHHHHhCCceEeecC--CEE
Q 003466 717 ----------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-G--YGSLYAASLLKKLREDGVYMRPLG--NVI 781 (818)
Q Consensus 717 ----------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~--~~~~~a~~~~~~l~e~Gvlv~p~g--~~i 781 (818)
.+.+.+.+.+.+++.+..+++.|+++++++..+.... . +....+..+++.|+++||++++.+ +.+
T Consensus 350 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~i 429 (460)
T 3gju_A 350 LVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDIL 429 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEE
Confidence 1112233445667889999999999999997553211 1 122356788999999999999976 999
Q ss_pred EEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 782 YLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 782 r~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
||+||+++|++||++++++|+++++++.
T Consensus 430 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 430 GFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-54 Score=495.48 Aligned_cols=379 Identities=27% Similarity=0.392 Sum_probs=301.5
Q ss_pred hhhhcCccccccCCC-CCCCCCCeEEEEeecCCeeEEEeC-CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhh
Q 003466 354 PKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~-~~~~~~~~~vi~~~~G~~~~v~D~-dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~ 431 (818)
.+++.+++||||+++ +. ...|+++++++|. ++||. ||| ..+||||+||||++++||+ ||+|++|+++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~--~l~d~~dG~--~~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~~ 106 (457)
T 3tfu_A 34 IAVDGAHLWHPYSSIGRE--AVSPVVAVAAHGA--WLTLIRDGQ--PIEVLDAMSSWWTAIHGHG-HPALDQALTTQLRV 106 (457)
T ss_dssp HHHHHHHBCCTTCCSSCC--SSCCEEEEEEEBT--EEEEEETTE--EEEEEETTHHHHTCTTCBT-CHHHHHHHHHHHHH
T ss_pred HHHHHhhcCccccccccc--CCCCceEEeeecC--EEEEccCCC--eeEEEECCCcHhhhccCCC-CHHHHHHHHHHHHh
Confidence 455667899999987 33 3578899999997 69999 985 1279999999999999999 99999999999999
Q ss_pred cccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEE
Q 003466 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (818)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (818)
+.+.++..+.+++..+|+++|++.++.+ .++|+|++||+|||+.|+|++ +.|+..+|. +++.+||+
T Consensus 107 ~~~~~~~~~~~~~~~~L~e~la~~~~~~-~~~v~~~~sGseA~~~Alk~a-~~~~~~~g~------------~g~~~ii~ 172 (457)
T 3tfu_A 107 MNHVMFGGLTHEPAARLAKLLVDITPAG-LDTVFFSDSGSVSVEVAAKMA-LQYWRGRGL------------PGKRRLMT 172 (457)
T ss_dssp CSCCCSSSEECHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEE
T ss_pred ccCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCceEEE
Confidence 8876655567899999999999998643 579999999999999999999 555444443 56779999
Q ss_pred EcCCCCCCccccccccC-CCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcc
Q 003466 512 LKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (818)
Q Consensus 512 ~~~sYHG~t~~als~tg-~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~ 590 (818)
++++|||.+.+++++++ ...++.. +.+ ...+..+++.|... ..++|
T Consensus 173 ~~~~yhg~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~~~~~~p~~~---------~~~~d-------- 219 (457)
T 3tfu_A 173 WRGGYHGDTFLAMSICDPHGGMHSL-----WTD-----------VLAAQVFAPQVPRD---------YDPAY-------- 219 (457)
T ss_dssp ETTCCCCSSHHHHTTSCCC--------------------------CCCCEEECCCCSS---------CCHHH--------
T ss_pred EcCCcCCccHHhhcccCCccccccc-----ccC-----------CCCCceEecCCCcc---------cCHHH--------
Confidence 99999999999999965 3333321 000 01122333443211 00111
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC
Q 003466 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (818)
Q Consensus 591 ~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG 670 (818)
.+.|++.|++ +++++++||+||++|+.+|+++++++|+++|+++|++||++||+|||+|||||+|
T Consensus 220 ----------~~~le~~l~~-----~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G 284 (457)
T 3tfu_A 220 ----------SAAFEAQLAQ-----HAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTG 284 (457)
T ss_dssp ----------HHHHHHHHHH-----HGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred ----------HHHHHHHHHh-----CCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCcccc
Confidence 3677777763 3468999999993399999999999999999999999999999999999999999
Q ss_pred ccchhcccCCCCcEEEecccccCCccccceeecchHHHhhcc---CC-----hH----------------HH--------
Q 003466 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV---GD-----SK----------------LW-------- 718 (818)
Q Consensus 671 ~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~---~~-----~~----------------~~-------- 718 (818)
++|+++++|+.||++||||+|||||+|+|++++++++++.+. .. .. .+
T Consensus 285 ~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~ 364 (457)
T 3tfu_A 285 ALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTR 364 (457)
T ss_dssp SSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred chhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999889999999999998873 11 10 00
Q ss_pred ----HHHHHHHHH---cCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChH
Q 003466 719 ----DLELIQQIS---SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSP 791 (818)
Q Consensus 719 ----~~~l~~~l~---~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~ 791 (818)
.+.+.+.++ .++.+..+|+.|+++++++.... .+..+++.|+++||++++.++.+|++||+++|+
T Consensus 365 ~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~--------~~~~~~~~l~~~Gv~v~~~~~~lRi~p~~~~t~ 436 (457)
T 3tfu_A 365 ITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPV--------DLAVATPAALDRGVWLRPFRNLVYAMPPYICTP 436 (457)
T ss_dssp HHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCC--------CHHHHHHHHHHTTEECCCBTTEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcc--------cHHHHHHHHHHCCeEEEecCCEEEEECCCCCCH
Confidence 112233333 46778899999999999996541 256789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003466 792 EVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 792 edId~~~~~l~~~l~~l~ 809 (818)
+||++++++|+++++++.
T Consensus 437 eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 437 AEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999987653
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-54 Score=490.54 Aligned_cols=395 Identities=27% Similarity=0.369 Sum_probs=295.7
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
+.+.+.+++||||++++.+ ...|+++++++|. ++||.||+ +|||+++++|++++||+ ||+|++|+++|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~--~v~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~ 76 (448)
T 3dod_A 5 LIEKSKKHLWLPFTQMKDY-DENPLIIESGTGI--KVKDINGK----EYYDGFSSVWLNVHGHR-KKELDDAIKKQLGKI 76 (448)
T ss_dssp HHHHHHHHBCCTTCCHHHH-HHSCCEEEEEEBT--EEEETTSC----EEEETTHHHHTCSSCBS-CHHHHHHHHHHHTTC
T ss_pred HHHhhhhcccccccccccc-cCCCceEEEeeeC--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhc
Confidence 4566778999999987654 2457889999997 69999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
.+.....+.++...+|+++|++.++.+ .++|+|++||+|||+.|+|++ +.++...|. +++.+||++
T Consensus 77 ~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~al~~~-~~~~~~~G~------------~~~~~vi~~ 142 (448)
T 3dod_A 77 AHSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMA-FQYWKNIGK------------PEKQKFIAM 142 (448)
T ss_dssp SCCCCSSSEEHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred cCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhhCC------------CCCCEEEEE
Confidence 765444567889999999999988643 589999999999999999999 555322332 446799999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+++|||.+.+++++++...++..+ .| ...+..+++.|++|+++ + .+
T Consensus 143 ~~~yhg~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~----------~--------~~ 188 (448)
T 3dod_A 143 KNGYHGDTIGAVSVGSIELFHHVY-GP---------------LMFESYKAPIPYVYRSE----------S--------GD 188 (448)
T ss_dssp C---------------------------------------------CEEECCCCCTTSS----------S--------CC
T ss_pred CCCCCCccHHHHHhcCCccccccc-cC---------------CCCCceEeCCCccccCC----------c--------cc
Confidence 999999999999999866554431 01 01233456666655421 0 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc-cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH-AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~-g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~ 671 (818)
...+.....+.|++.|+ .+++++++||+||+ + +++|+++++++|+++|+++|++||++||+|||+|||||+|+
T Consensus 189 ~~~~~~~d~~~le~~l~-----~~~~~~a~vi~ep~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~ 262 (448)
T 3dod_A 189 PDECRDQCLRELAQLLE-----EHHEEIAALSIESM-VQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK 262 (448)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHGGGEEEEEEESS-EESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred hhhhhHHHHHHHHHHHH-----hCCCCEEEEEEeCc-ccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc
Confidence 11222333577888886 23568999999998 7 99999999999999999999999999999999999999999
Q ss_pred cchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC-------ChH----------------------------
Q 003466 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG-------DSK---------------------------- 716 (818)
Q Consensus 672 ~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~-------~~~---------------------------- 716 (818)
+|+++++|+.||++||||++++||+|+|++++++++++.+.. ...
T Consensus 263 ~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 342 (448)
T 3dod_A 263 MFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVE 342 (448)
T ss_dssp SSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHH
Confidence 999999999999999999999997899999999999998764 100
Q ss_pred -------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC-CCchH--HHHHHHHHHHhCCceEeecCCEEEEECC
Q 003466 717 -------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GYGSL--YAASLLKKLREDGVYMRPLGNVIYLMCG 786 (818)
Q Consensus 717 -------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~~~~~--~a~~~~~~l~e~Gvlv~p~g~~ir~~pp 786 (818)
.+.+.+.+ +..++.+..+++.|+++++++..+.... ..... .+..+++.|+++||++.|.++.+|++||
T Consensus 343 ~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~iRi~~~ 421 (448)
T 3dod_A 343 QVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPP 421 (448)
T ss_dssp HHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEETTEEEECCC
T ss_pred HHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccCCEEEEECC
Confidence 01111222 4467788999999999999997642111 11111 2567899999999999998999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 003466 787 PCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 787 l~~t~edId~~~~~l~~~l~~l~~ 810 (818)
+.+|+++|++++++|+++++++..
T Consensus 422 ~~~t~e~i~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 422 LASTAEELSEMVAIMKQAIHEVTS 445 (448)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987653
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=474.42 Aligned_cols=389 Identities=23% Similarity=0.307 Sum_probs=307.8
Q ss_pred cchhhhcCcccc---ccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHh
Q 003466 352 DMPKRAGELFWW---PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (818)
Q Consensus 352 ~l~~~~~~~~~~---p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q 428 (818)
++.+++.+++|+ ||++ ..|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~------~~p~~~~~~~G~--~v~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~A~~~~ 77 (452)
T 3n5m_A 11 ELLAKDEQYVWHGMRPFSP------NSTTVGAKAEGC--WVEDIQGK----RYLDGMSGLWCVNSGYG-RKELAEAAYKQ 77 (452)
T ss_dssp HHHHHHHHHBCCTTSCSCG------GGCCEEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHH
T ss_pred HHHHHhhhhcccccccccc------CCCceEEEeeeC--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHH
Confidence 355677788998 4432 467899999997 69999999 99999999999999999 99999999999
Q ss_pred hhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceE
Q 003466 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (818)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~ 508 (818)
++++.+ ....+.++...+|+++|++.++.+ .+ |+|++||+|||+.|+|++ +.|+...|+ +++.+
T Consensus 78 ~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~-~~-v~~~~ggseA~~~al~~~-~~~~~~~g~------------~~~~~ 141 (452)
T 3n5m_A 78 LQTLSY-FPMSQSHEPAIKLAEKLNEWLGGE-YV-IFFSNSGSEANETAFKIA-RQYYAQKGE------------PHRYK 141 (452)
T ss_dssp HTTCCC-CCTTSEEHHHHHHHHHHHHHHTSC-EE-EEEESSHHHHHHHHHHHH-HHHHHTTTC------------TTCCE
T ss_pred HHhcCC-cccccCCHHHHHHHHHHHHhCCCC-ce-EEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCE
Confidence 999877 334567899999999999998754 35 999999999999999999 555333332 35679
Q ss_pred EEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhh
Q 003466 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (818)
Q Consensus 509 II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~ 588 (818)
||+++++|||.+.+++++++...++..+ .|. .++..+++.|++++. +|||..
T Consensus 142 vi~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~--------~~~~~~---- 193 (452)
T 3n5m_A 142 FMSRYRGYHGNTMATMAATGQAQRRYQY-EPF---------------ASGFLHVTPPDCYRM--------PGIERE---- 193 (452)
T ss_dssp EEEETTCCCCSSHHHHHSCCCGGGTTTT-CCC---------------CSCEEEECCCCTTTS--------TTTTTS----
T ss_pred EEEECCCcCCCCHHHHhcCCchhhcccc-CCC---------------CCCCeEeCCCccccC--------ccCCch----
Confidence 9999999999999999999876554431 111 123455666666643 244421
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCccc
Q 003466 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (818)
Q Consensus 589 ~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR 668 (818)
+.+...+.+.|++.+++ .+++++++||+||++++ +|+++++++|+++|+++|++||++||+|||||||||
T Consensus 194 -----~~~~~~~~~~le~~l~~----~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 194 -----NIYDVECVKEVDRVMTW----ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp -----CGGGCHHHHHHHHHHHH----HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred -----hhHHHHHHHHHHHHHHh----cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 12222345778888863 23568999999997578 999999999999999999999999999999999999
Q ss_pred CCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC----C-----h-H----------------------
Q 003466 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG----D-----S-K---------------------- 716 (818)
Q Consensus 669 tG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~----~-----~-~---------------------- 716 (818)
+|++|+++++++.||++||||++++||+|+|++++++++++.+.. . . .
T Consensus 264 ~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 343 (452)
T 3n5m_A 264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENL 343 (452)
T ss_dssp TSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTH
T ss_pred ccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 999999999999999999999999998999999999999998843 1 0 0
Q ss_pred ---------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC-CCchHHHHHHHHHHHhCCceEeecC-------C
Q 003466 717 ---------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GYGSLYAASLLKKLREDGVYMRPLG-------N 779 (818)
Q Consensus 717 ---------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~~~~~~a~~~~~~l~e~Gvlv~p~g-------~ 779 (818)
.+.+.+.+.+..++.+..+++.|+++++++..+.... .++...+..+++.|+++||++.+.+ +
T Consensus 344 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~ 423 (452)
T 3n5m_A 344 IERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNN 423 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCC
Confidence 0111222233567888999999999999996542111 1223456678999999999999864 8
Q ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 780 VIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 780 ~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+||.||+++|++||++++++|++++++
T Consensus 424 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 424 ILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988753
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=471.27 Aligned_cols=369 Identities=21% Similarity=0.229 Sum_probs=293.1
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+++|++++.+.....+.++...+|+++|++
T Consensus 43 ~p~~~~~g~G~--~v~d~~g~----~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 115 (451)
T 3oks_A 43 MPVYAVRAGGG--IVEDVDGN----RLIDLGSGIAVTTVGNS-APKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNR 115 (451)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCceEEEeecC--EEEECCCC----EEEEcCCCccccccCCC-CHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHH
Confidence 46688999997 69999999 99999999999999999 9999999999999987765555778999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~ 533 (818)
.++....++|+|++||+|||+.|+|++ +.+++ +.+||+++++|||.+.+++++++.. .++
T Consensus 116 ~~~~~~~~~v~~~~sGseA~~~Alk~a-~~~~g------------------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 176 (451)
T 3oks_A 116 LTPVRGDKRSALFNSGSEAVENAVKIA-RSHTH------------------KPAVVAFDHAYHGRTNLTMALTAKVMPYK 176 (451)
T ss_dssp HSSCCSSEEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCcCCCCEEEEeCcHHHHHHHHHHHH-HHhcC------------------CCeEEEEcCCcCCccHHHHHhcCCCcccc
Confidence 887433479999999999999999999 66654 3589999999999999999999863 343
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. +. + ..++..++++|++++.+. . ..+.+.+.....+.+++.|++.
T Consensus 177 ~~-----~~---~--------~~~~~~~~~~~~~~~~~~--------~--------g~~~~~~~~~~~~~~~~~l~~~-- 222 (451)
T 3oks_A 177 DG-----FG---P--------FAPEIYRAPLSYPFRDAE--------F--------GKELATDGELAAKRAITVIDKQ-- 222 (451)
T ss_dssp TT-----CC---S--------CCSSEEEECCCCHHHHGG--------G--------CTTTTTCHHHHHHHHHHHHHHH--
T ss_pred cC-----CC---C--------CCCCcEEeCCCccccccc--------c--------ccccchhhHHHHHHHHHHHHhh--
Confidence 32 10 0 113445666676553210 0 0011111222334455555421
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
..++++++||+||+ +++||+++++++|+++|+++|++||++||+||||+||||+|++|+++++|+.||++||||++++
T Consensus 223 -~~~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~ 300 (451)
T 3oks_A 223 -IGADNLAAVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAG 300 (451)
T ss_dssp -TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred -cCCCCEEEEEEcCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhC
Confidence 23568999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~ 738 (818)
| +|+|++++++++++.+..... .+.+.+.+.+..++.+..+++.
T Consensus 301 G-~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 379 (451)
T 3oks_A 301 G-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGR 379 (451)
T ss_dssp T-SSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred C-cceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 9 799999999999987753211 1111223334567889999999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
|+++++++.... ...++...+..+++.|+++||++.+.+ +.+|++||+++|+++|++++++|++++++
T Consensus 380 G~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 380 GAMIAMELVKAG-TTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp TTEEEEEEBSTT-SCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEecCc-cCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999997521 122344567789999999999999854 89999999999999999999999998753
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=469.50 Aligned_cols=366 Identities=24% Similarity=0.264 Sum_probs=291.9
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+.+|++++.+..+..+.++...+|+++|++
T Consensus 46 ~p~~~~~~~G~--~v~d~~G~----~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 118 (453)
T 4ffc_A 46 APVYAVDADGG--VIVDADGN----SFIDLGAGIAVTTVGAS-HPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNA 118 (453)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEeCCCC----EEEEcCCCcccCcCCCC-CHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHH
Confidence 46688999997 69999999 99999999999999999 9999999999999987765555778999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~ 533 (818)
.++....++|+|+|||+|||+.|||++ +.+++ +.+||+++++|||.+.+++++++.. .++
T Consensus 119 ~~~~~~~~~v~~~~sGseA~~~alk~a-~~~~g------------------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 179 (453)
T 4ffc_A 119 LTPGDHDKRTALFNSGAEAVENAIKVA-RLATG------------------RPAVVAFDNAYHGRTNLTMALTAKSMPYK 179 (453)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCCCCCcEEEEeCcHHHHHHHHHHHH-HHhcC------------------CCEEEEEcCccCCcchHHHhhcCCCcccc
Confidence 887432479999999999999999999 66654 3589999999999999999999754 333
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. +.+ ...+..++++|.+++ |. +. .+..+....+.+.|++.+
T Consensus 180 ~~-----~~~-----------~~~~~~~~~~~~~~~------------~~---~g--~~~~~~~~~~~~~l~~~i----- 221 (453)
T 4ffc_A 180 SQ-----FGP-----------FAPEVYRMPASYPLR------------DE---PG--LTGEEAARRAISRIETQI----- 221 (453)
T ss_dssp TT-----SCS-----------CCSSEEEECCCCTTT------------SC---TT--CCHHHHHHHHHHHHHHHT-----
T ss_pred cC-----CCC-----------CCCCcEEeCCCcccc------------Cc---cc--cchHHHHHHHHHHHHHhc-----
Confidence 32 110 012344556664442 21 00 011111222234455444
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.++++++||+||+ +++||+++++++|+++|+++|++||++||+||||+||||+|++|+++++|+.||++||||++++
T Consensus 222 --~~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~ 298 (453)
T 4ffc_A 222 --GAQSLAAIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAG 298 (453)
T ss_dssp --CGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGT
T ss_pred --CCCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcC
Confidence 2468999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~ 738 (818)
| +|+|++++++++++.+..... .+.+.+.+.+..++.+..+++.
T Consensus 299 G-~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 377 (453)
T 4ffc_A 299 G-MPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGR 377 (453)
T ss_dssp T-SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred C-cCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Confidence 9 799999999999987753211 1111223334567889999999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
|+++++++.... ...++...+..+++.|+++||++.+.+ +.+|++||+++|++||++++++|+++++++.
T Consensus 378 g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 378 GAMLAIEIVKPG-TLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp TTEEEEEEBCTT-SCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEecCc-ccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999997521 222344567889999999999999854 8999999999999999999999999997753
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=430.58 Aligned_cols=377 Identities=22% Similarity=0.232 Sum_probs=275.4
Q ss_pred CccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCC
Q 003466 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (818)
Q Consensus 359 ~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~ 438 (818)
+++||||. ..|.++++++|. ++||.+|+ +|||+++++|++++||+ ||+|++|+.+|++++.+....
T Consensus 2 ~~~~~~~~-------~~~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~ 67 (430)
T 3i4j_A 2 SNVFYRSS-------KPYPVAVRGEGV--FLYDDAGR----RYLDGSSGALVANIGHG-RAEVGERMAAQAARLPFVHGS 67 (430)
T ss_dssp -CBCCSSS-------SCCCEEEEEEBT--EEEETTSC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCCCCCTT
T ss_pred CccccCCC-------CCCceEEeeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhccccccc
Confidence 57899982 346788999997 69999999 99999999999999999 999999999999988765544
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|++..+.+ .++|+|++||+||++.|++++ +.+....|+ +++.+||+++.+|||
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~al~~~-~~~~~~~g~------------~~~~~vi~~~~~yhg 133 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLP-TFRFWAVSGGSEATESAVKLA-RQYHVERGE------------PGRFKVITRVPSYHG 133 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCT-TCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEETTC---
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEeCCcCC
Confidence 567889999999999988644 579999999999999999999 444334443 456799999999999
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.+.+++++++...++..+ .+. . + ..+..+++.|+.+++ ..
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~--------~-~----~~~~~~~~~~~~~~~--------------------------~~ 173 (430)
T 3i4j_A 134 ASLGSLAASGMGARRELY-TPL--------M-R----PEAWPKLPKPDPARN--------------------------GA 173 (430)
T ss_dssp --------------------------------C----GGGSCEECCCCTTSC--------------------------HH
T ss_pred CCcccccccCcccccccc-CCc--------C-C----CCCceEcCCCcccch--------------------------hh
Confidence 999999888765443320 000 0 0 002233444433210 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc-CCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g-~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (818)
...+.|++.|++ .+++++++|++||+ ++ ++|+++++++|+++|+++|++||++||+|||++||||+|+++++++
T Consensus 174 ~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~ 248 (430)
T 3i4j_A 174 EDAEGLRALLER----EGPETVAAFMAEPV-VGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSR 248 (430)
T ss_dssp HHHTHHHHHHHH----HCGGGEEEEEECSS-CCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred HHHHHHHHHHHh----cCCCCEEEEEEcCc-ccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhh
Confidence 123567777763 22368999999998 89 9999999999999999999999999999999999999999999999
Q ss_pred c-CCCCcEEEecccccCCccccceeecchHHHhhccCC-------h-H-------------------------------H
Q 003466 678 L-GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------S-K-------------------------------L 717 (818)
Q Consensus 678 ~-gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-------~-~-------------------------------~ 717 (818)
+ ++.||++||||++++||+|+|++++++++++.+... . . .
T Consensus 249 ~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 328 (430)
T 3i4j_A 249 WSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQ 328 (430)
T ss_dssp TTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9 999999999999999989999999999998876521 1 0 0
Q ss_pred HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCc-hHHHHHHHHHHHhCCceEeec--------CCEEEEECCCC
Q 003466 718 WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG-SLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPC 788 (818)
Q Consensus 718 ~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~-~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~ 788 (818)
+.+.+.+.+..++.+..+++.|.++.+++.+.......+ ...+..+++.|+++||++++. ++.+|++|+++
T Consensus 329 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~ 408 (430)
T 3i4j_A 329 LLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLS 408 (430)
T ss_dssp HHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEEEECCCTT
T ss_pred HHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCC
Confidence 111222333467888999999999999996321111100 122567899999999999986 58899999999
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 003466 789 SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 789 ~t~edId~~~~~l~~~l~~l 808 (818)
+|++++++++++|+++++++
T Consensus 409 ~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 409 ITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-46 Score=421.98 Aligned_cols=346 Identities=21% Similarity=0.298 Sum_probs=262.1
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +|||+.+|+++..+||+ ||+|++|+.+|++++.+.+. .+.++...+|+++|++
T Consensus 47 ~~~~~~~~~g~--~~~d~~G~----~ylD~~~g~~~~~lgh~-~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 118 (433)
T 1z7d_A 47 IPVVLKRAKGV--FVYDVNDK----RYYDFLSAYSSVNQGHC-HPNILNAMINQAKNLTICSR-AFFSVPLGICERYLTN 118 (433)
T ss_dssp EEEEEEEEEBT--EEEETTCC----EEEESSHHHHTTTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEEHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEECCCC----EEEEcccchhhcccCCC-CHHHHHHHHHHHHhCCCccC-CcCCHHHHHHHHHHHh
Confidence 47788999887 79999999 99999999999999999 99999999999998765432 3567889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhh-hcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t-~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+++ .++|+|++||+||++.|++++ +.|+ ..+|. .++|.+||+++++|||.+.+++++++.+.++
T Consensus 119 ~~g---~~~v~~~~sGseA~~~al~~a-~~~~~~~~g~-----------~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~ 183 (433)
T 1z7d_A 119 LLG---YDKVLMMNTGAEANETAYKLC-RKWGYEVKKI-----------PENMAKIVVCKNNFSGRTLGCISASTTKKCT 183 (433)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTSCC-----------CTTCCEEEEETTC------------------
T ss_pred hcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccCC-----------CCCCCeEEEEeCCcCCcchhhhcccCCcccc
Confidence 986 479999999999999999998 5442 11111 0345789999999999999988888754333
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
..+ ++.. .+... ++++|+ +.+++.++
T Consensus 184 ~~~--------~p~~--------~~v~~----------------~~~~d~------------------~~le~~l~---- 209 (433)
T 1z7d_A 184 SNF--------GPFA--------PQFSK----------------VPYDDL------------------EALEEELK---- 209 (433)
T ss_dssp ------------------------CEEE----------------ECTTCH------------------HHHHHHHT----
T ss_pred ccC--------CCCC--------CCeEE----------------eCCCCH------------------HHHHHHhC----
Confidence 210 0000 01111 113442 56777774
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|++++++++|+.||++|+||++||
T Consensus 210 ---~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~ 285 (433)
T 1z7d_A 210 ---DPNVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSG 285 (433)
T ss_dssp ---STTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ---CCCEEEEEEECC-CCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccC
Confidence 246899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHH----cCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQIS----SHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~----~~~~v~~vrg~ 738 (818)
||+|+|++++++++++.+..... .+ .+.+.+.++ .++.+..+++.
T Consensus 286 G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~ 365 (433)
T 1z7d_A 286 GHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGK 365 (433)
T ss_dssp TSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEee
Confidence 98899999999999987754211 00 011222332 45777889999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|.++.+++.... ..+..+++.|+++||++.+. ++.+|+.||+.+|++||++++++|+++++++
T Consensus 366 g~~~~i~~~~~~-------~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 366 GLLCAIEFKNEL-------VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp TTEEEEEECTTT-------CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEccCh-------hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999986431 12557889999999999986 5899999999999999999999999998765
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=460.29 Aligned_cols=378 Identities=17% Similarity=0.150 Sum_probs=290.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhcCccccccCCC-CCCCCCCeEEEEeecCCeeEEEeCCcCccccceeeccccccc
Q 003466 332 FDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (818)
Q Consensus 332 l~~l~~~l~~~~~~r~~~~~~l~~~~~~~~~~p~t~~-~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~ 410 (818)
+..+++...++|.++..+++++.++..+++....... ..+ ...|+++++++|. ++||.||| +||||++++|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~~g~~~~~~~~-~~~p~~~~~~~G~--~l~D~dG~----~yiD~~~~~~~ 111 (465)
T 2yky_A 39 KAQAIAAARNTFARDNPVSAGHHERARRSMPGGNTRSILFH-RPFPLVIAQGTGS--RFQDVDGH----AYVNFLGEYTA 111 (465)
Confidence 4444555566777788888888888877764311111 111 1247888898886 79999999 99999999999
Q ss_pred ccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 411 ~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
.++||+ ||+|++|+++|+++... .++.++...+|+++|++++| + .++|+|+|||+|||++|+|+| |.+++
T Consensus 112 ~~lGh~-~p~V~~Av~~q~~~~~~---~~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~a-r~~tg--- 181 (465)
T 2yky_A 112 GLFGHS-HPVIRAAVERALAVGLN---LSTQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATA-TAITG--- 181 (465)
Confidence 999999 99999999999998422 24578899999999999986 3 589999999999999999999 76654
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
|.+||+++++|||++.+++ ++ +. .. + + |. ..+.
T Consensus 182 ---------------r~~ii~~~~~yHG~~~~~~--sg-~~-~~----------g--~--~~-------~~~~------- 214 (465)
T 2yky_A 182 ---------------RKTVLAFDGGYHGGLLNFA--SG-HA-PT----------N--A--PY-------HVVL------- 214 (465)
Confidence 3589999999999998888 43 10 00 0 0 00 0011
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
++|||+ +.|++.+++ .++++++||+||+ ++++|+++++++|+++|+++|
T Consensus 215 -------~~~~d~------------------~~l~~~l~~-----~~~~~aavi~epv-~~~~G~~~~~~~~l~~l~~l~ 263 (465)
T 2yky_A 215 -------GVYNDV------------------EGTADLLKR-----HGHDCAAILVEPM-LGAGGCVPAERAFLDLLRAEA 263 (465)
Confidence 125553 556666652 3468999999998 899999999999999999999
Q ss_pred HhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC---Ch--H---------
Q 003466 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG---DS--K--------- 716 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~---~~--~--------- 716 (818)
++||++||+|||+| | |+|++|+++++|+.||++||||++||| +|+|++++++++++.+.. +. .
T Consensus 264 ~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npl 340 (465)
T 2yky_A 264 SRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNIL 340 (465)
Confidence 99999999999999 6 999999999999999999999999999 799999999999998765 11 1
Q ss_pred ----------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcc-----cCCCchHHHHHHHH
Q 003466 717 ----------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGC-----NAGYGSLYAASLLK 765 (818)
Q Consensus 717 ----------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~-----~~~~~~~~a~~~~~ 765 (818)
.+ .+++.+.+++++.+.++++.|+|+++++.++.. ...++...+..+++
T Consensus 341 a~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~ 420 (465)
T 2yky_A 341 TMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFF 420 (465)
Confidence 11 111222223456667899999999999975210 00112234667899
Q ss_pred HHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 766 KLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 766 ~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.|+++||++.|.+... ||+++|++|||+++++|+++++++.+
T Consensus 421 ~ll~~GV~v~p~~~~~---~s~~~t~edid~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 421 HMLRKGIYLAPRGMYA---LSLEIADAGRDAFAEALADFIGEQRA 462 (465)
Confidence 9999999999865322 88999999999999999999987753
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=425.46 Aligned_cols=394 Identities=19% Similarity=0.269 Sum_probs=300.6
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
..+.+++++|+||++++.+. ..|+++.+++|. ++||.+|+ +|||+.+++|++++||+ ||+|++|+.+|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~ 82 (449)
T 3a8u_X 11 ASQLKLDAHWMPYTANRNFL-RDPRLIVAAEGS--WLVDDKGR----KVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTL 82 (449)
T ss_dssp GGGSCGGGSCCTTSCHHHHH-HSCCCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTC
T ss_pred HHhhhhcccccccccccccc-CCCceEEeeecC--EEEECCCC----EEEECCccHhhccCCCC-CHHHHHHHHHHHHhC
Confidence 44567788999999875432 257788898887 79999999 99999999999999999 999999999999886
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
....+..+.++...+|+++|+++++.+ .++|+|++||+||++.|++++ +.|+..+|+ +++.+||++
T Consensus 83 ~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggsea~~~al~~~-~~~~~~~g~------------~~~~~vi~~ 148 (449)
T 3a8u_X 83 DYSPGFQYGHPLSFQLAEKITDLTPGN-LNHVFFTDSGSECALTAVKMV-RAYWRLKGQ------------ATKTKMIGR 148 (449)
T ss_dssp SCCCSSSCCCHHHHHHHHHHHTTSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEE
Confidence 522222567888999999999998643 579999999999999999998 666654443 456789999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+.+|||.+..++++++.+.++..| ++. ..+..+++.|..+... |+.+ |
T Consensus 149 ~~~yhg~~~~~~~~~g~~~~~~~~--------~~~--------~~~~~~v~~~~~~~~~--------~~~~--------d 196 (449)
T 3a8u_X 149 ARGYHGVNIAGTSLGGVNGNRKLF--------GQP--------MQDVDHLPHTLLASNA--------YSRG--------M 196 (449)
T ss_dssp TTCCCCSSHHHHHHCCCHHHHTTT--------CCC--------SCSEEEECCCCCGGGT--------TCSS--------S
T ss_pred CCCcCCCChhhhhccCChhhcccc--------CCC--------CCCCeEecCCccccCc--------cccC--------C
Confidence 999999999888888754333220 000 0123344555433210 0000 1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
.+.....+.+.|++.|++ .+++++++|++||+ ++.+|+++++++|+++|+++|++||++||+|||||||||+|++
T Consensus 197 ~~~~~~~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 271 (449)
T 3a8u_X 197 PKEGGIALADELLKLIEL----HDASNIAAVFVEPL-AGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM 271 (449)
T ss_dssp CSSSHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc
Confidence 111222335778888863 12257999999998 8889999999999999999999999999999999999999998
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC-----------h-H----------------HH------
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-----------S-K----------------LW------ 718 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-----------~-~----------------~~------ 718 (818)
++++++++.||++++||++++||+|+|++++++++++.+... . . .+
T Consensus 272 ~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~ 351 (449)
T 3a8u_X 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLV 351 (449)
T ss_dssp SHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred hhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHH
Confidence 888999999999999999999988999999999998876431 0 0 00
Q ss_pred ------HHHHHHHHHc---CCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCC
Q 003466 719 ------DLELIQQISS---HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 789 (818)
Q Consensus 719 ------~~~l~~~l~~---~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~ 789 (818)
.+.+.+.+++ ++.+..+++.|.++.+++....... ......+.+.|+++||++++.++.+|+.||+.+
T Consensus 352 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~g~~iRis~~~~~ 428 (449)
T 3a8u_X 352 QSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA---IVRPFEAGMALWKAGFYVRFGGDTLQFGPTFNS 428 (449)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBS---SHHHHHHHHHHHHHTEECEEETTEEEECCCTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccc---cccHHHHHHHHHHCCcEEecCCCEEEEECCCcC
Confidence 0122334443 5667788999999999996531000 002335888899999999998899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 003466 790 SPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 790 t~edId~~~~~l~~~l~~l 808 (818)
|++|+++++++|+++++++
T Consensus 429 t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 429 KPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988653
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=419.26 Aligned_cols=346 Identities=19% Similarity=0.265 Sum_probs=274.6
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +|||+.+|+|+.++||+ ||+|++|+.+|++++.+.+. .+.++...+|+++|++
T Consensus 58 ~~~~~~~~~G~--~~~d~~g~----~ylD~~sg~~~~~lgh~-~p~v~~Ai~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 129 (439)
T 2oat_A 58 LPVALERGKGI--YLWDVEGR----KYFDFLSSYSAVNQGHC-HPKIVNALKSQVDKLTLTSR-AFYNNVLGEYEEYITK 129 (439)
T ss_dssp CSCEEEEEEBT--EEEETTCC----EEEESSGGGGTTTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEESSHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEECCCC----EEEEccCCcccccCCCC-CHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHH
Confidence 35678898887 79999999 99999999999999999 99999999999998765432 3457789999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhh-cccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~-~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+++ .++++|++||+||++.|++++ +.|+. .+|. .++|.+||+++++|||.+.+++++++.+.++
T Consensus 130 ~~g---~~~v~~~~sGseA~~~al~~~-~~~~~~~~g~-----------~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 194 (439)
T 2oat_A 130 LFN---YHKVLPMNTGVEAGETACKLA-RKWGYTVKGI-----------QKYKAKIVFAAGNFWGRTLSAISSSTDPTSY 194 (439)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTTCC-----------CTTCCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred hcC---CCEEEEeCCHHHHHHHHHHHH-HHHhhhccCC-----------CCCCCeEEEEcCCCCCCCHhHhhcCCChhcc
Confidence 886 479999999999999999999 54431 1111 0345689999999999999988887643322
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .++.. .+... ++|+|+ +.+++.|+
T Consensus 195 ~~--------~~p~~--------~~v~~----------------~~~~d~------------------~~le~~l~---- 220 (439)
T 2oat_A 195 DG--------FGPFM--------PGFDI----------------IPYNDL------------------PALERALQ---- 220 (439)
T ss_dssp TT--------SCSCC--------TTEEE----------------ECSSCH------------------HHHHHHTT----
T ss_pred cC--------CCCCC--------CCeEE----------------eCCCCH------------------HHHHHHhC----
Confidence 21 00000 01111 114442 56777774
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+++++|++||+ ++.+|+++++++++++|+++|++||++||+||||+||||+|++++++++|+.||++++||++||
T Consensus 221 ---~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~ 296 (439)
T 2oat_A 221 ---DPNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSG 296 (439)
T ss_dssp ---STTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ---CCCEEEEEEECC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccC
Confidence 247899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHHc--CCCeeEEEeeee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQISS--HRTVQRVVALGT 740 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~~--~~~v~~vrg~Gl 740 (818)
||+|+|++++++++++.+..... .+ .+.+.+.+++ ++.+..+++.|+
T Consensus 297 G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~ 376 (439)
T 2oat_A 297 GLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGL 376 (439)
T ss_dssp TSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCTTTEEEEEEETT
T ss_pred CCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeee
Confidence 98899999999999987754211 01 1123344443 456678999999
Q ss_pred EEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 741 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 741 ~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++.+++.... . ..+..+++.|+++||++.+. ++.+|+.||+.+|++||++++++|++++++
T Consensus 377 ~~~v~l~~~~---~---~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 377 LNAIVIKETK---D---WDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp EEEEEECCCS---S---CCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecCc---c---HHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 9999986431 0 12457889999999999986 489999999999999999999999998754
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=414.76 Aligned_cols=352 Identities=17% Similarity=0.256 Sum_probs=271.5
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. ++||.||+ +|||+++++|++++||+ ||+|++|+++|+++... .++.++...+|+++|+
T Consensus 36 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la 105 (434)
T 3l44_A 36 GAPIAMERGKGA--YFWDVDGN----KYIDYLAAYGPIITGHA-HPHITKAITTAAENGVL---YGTPTALEVKFAKMLK 105 (434)
T ss_dssp SCCCCEEEEEBT--EEEETTCC----EEEECCGGGTTCSSCBT-CHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhCcC---CCCCCHHHHHHHHHHH
Confidence 357789999987 69999999 99999999999999999 99999999999988532 2456889999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+.++. .++++|++||+||++.|+|++ +.+++ +.+||+++++|||.+..++++++.....
T Consensus 106 ~~~~~--~~~v~~~~sGsea~~~ai~~a-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 164 (434)
T 3l44_A 106 EAMPA--LDKVRFVNSGTEAVMTTIRVA-RAYTG------------------RTKIMKFAGCYHGHSDLVLVAAGSGPST 164 (434)
T ss_dssp HHCTT--CSEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEETTCCCCSSGGGGBC-------
T ss_pred HhCCC--CCEEEEeCchHHHHHHHHHHH-HHhhC------------------CCEEEEEcCccCCCcHHHHhhcCCcccc
Confidence 98863 589999999999999999999 55543 3589999999999999999888754322
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .|...+ +|...... ...++|||+ +.|++.+++
T Consensus 165 ~~--~~~~~~--------------------~~~~~~~~---~~~~~~~d~------------------~~le~~l~~--- 198 (434)
T 3l44_A 165 LG--TPDSAG--------------------VPQSIAQE---VITVPFNNV------------------ETLKEALDK--- 198 (434)
T ss_dssp CC--CBSSTT--------------------CCHHHHTT---EEEECTTCH------------------HHHHHHHHH---
T ss_pred cC--CCCcCC--------------------CCCcCCCc---eEecCcccH------------------HHHHHHHHh---
Confidence 11 011000 00000000 001224442 567777763
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++++||+||+ ++.+|+++++++|+++|+++|++||++||+|||++|| |+|++++++++++.||++|+||++|+
T Consensus 199 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 274 (434)
T 3l44_A 199 --WGHEVAAILVEPI-VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGG 274 (434)
T ss_dssp --HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGT
T ss_pred --CCCCEEEEEEcCC-CCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcC
Confidence 3468999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh-------H-------------------------------HHHHHHHHHHHcCCCeeEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS-------K-------------------------------LWDLELIQQISSHRTVQRV 735 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~-------~-------------------------------~~~~~l~~~l~~~~~v~~v 735 (818)
| +|+|++++++++++.+.... . .+.+.+.+.+..++.+..+
T Consensus 275 G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 353 (434)
T 3l44_A 275 G-LPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITL 353 (434)
T ss_dssp T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred C-cCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9 79999999999998775410 0 0111122223346777889
Q ss_pred EeeeeEEEEEEecCcccC-----CCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCNA-----GYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~~-----~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
++.|.++++++....... .++...+..+++.|+++||++++.+ +.+|+ ++++|++|+++++++|+++++++.
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl--~~~~t~e~i~~~l~~l~~~l~~~~ 431 (434)
T 3l44_A 354 NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFL--TTEHTKEDIEYTIEAVGRAFAALA 431 (434)
T ss_dssp EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEEC--CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEE--ecccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999996431000 0233456778999999999999865 56665 688999999999999999998764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=412.89 Aligned_cols=350 Identities=19% Similarity=0.239 Sum_probs=263.6
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+.+|+++..+. ++.++...+|+++|+
T Consensus 34 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~---~~~~~~~~~la~~l~ 103 (429)
T 4e77_A 34 GIPLFIERADGA--YLFDVDGK----AYIDYVGSWGPMILGHN-HPAIRQAVIEAVERGLSF---GAPTEMEVKMAQLVT 103 (429)
T ss_dssp SCCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhCccc---CCCCHHHHHHHHHHH
Confidence 457789999987 69999999 99999999999999999 999999999999986532 356889999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+.++. .++++|++||+||++.|+|++ |.+++ +.+||+++++|||.+..++..++.....
T Consensus 104 ~~~~~--~~~v~~~~sGsea~~~al~~a-~~~~~------------------~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 162 (429)
T 4e77_A 104 DLVPT--MDMVRMVNSGTEATMSAIRLA-RGYTG------------------RDKIIKFEGCYHGHADCLLVKAGSGALT 162 (429)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEETTCCCC---------------
T ss_pred hhCCC--CCEEEEeCcHHHHHHHHHHHH-HHhhC------------------CCEEEEEcCccCCCChhhhhhcCCcccc
Confidence 98863 589999999999999999999 66654 3589999999999998877666533221
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .|...+ .+.. ..+... .++|+|+ +.|++.+++
T Consensus 163 ~~--~~~~~~------~~~~---------~~~~~~--------~~~~~d~------------------~~le~~l~~--- 196 (429)
T 4e77_A 163 LG--QPNSPG------VPTD---------FAKHTL--------TCTYNDL------------------ASVRQAFEQ--- 196 (429)
T ss_dssp -----CCCTT------SCGG---------GGTTEE--------EECTTCH------------------HHHHHHHHH---
T ss_pred cC--CCCcCC------CCCc---------cCCcee--------ecCCCCH------------------HHHHHHHHh---
Confidence 10 011000 0000 000000 0124442 567777763
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.++++++|++||+ ++.+|++.++++|+++|+++|++||++||+||||+|| |+|++++++++++.||++|+||++++
T Consensus 197 --~~~~~~~vi~ep~-~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~ 272 (429)
T 4e77_A 197 --YPQEVACIIVEPV-AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGG 272 (429)
T ss_dssp --STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGT
T ss_pred --cCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccC
Confidence 3568999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh-----H---------------------------------HHHHHHHHHHHcCCCeeEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS-----K---------------------------------LWDLELIQQISSHRTVQRV 735 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~-----~---------------------------------~~~~~l~~~l~~~~~v~~v 735 (818)
| +|+|++++++++++.+.... . .+.+.+.+.+..++.+..+
T Consensus 273 G-~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 351 (429)
T 4e77_A 273 G-MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVV 351 (429)
T ss_dssp T-SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred C-CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 9 69999999999999876421 0 1111222333456778899
Q ss_pred EeeeeEEEEEEecCcccC------CCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCNA------GYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~~------~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++.|+++++++....... .++...+..+++.|+++||++++.+ .++ .+++.+|++|+++++++|++++++
T Consensus 352 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~--~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 352 NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAG--FMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCE--ECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCE--EEeccCCHHHHHHHHHHHHHHHHh
Confidence 999999999997542111 1233456788999999999999875 444 467899999999999999998753
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=413.44 Aligned_cols=351 Identities=20% Similarity=0.281 Sum_probs=273.9
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+++|+++..+. .+.++...+|+++|+
T Consensus 34 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~---~~~~~~~~~l~~~la 103 (429)
T 3k28_A 34 MNPLFMERGKGS--KVYDIDGN----EYIDYVLSWGPLIHGHA-NDRVVEALKAVAERGTSF---GAPTEIENKLAKLVI 103 (429)
T ss_dssp CCCCCEEEEEBT--EEEETTCC----EEEESCGGGTTCTTCBS-CHHHHHHHHHHHHHCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCChhhcccCCC-CHHHHHHHHHHHhhCcCc---CCCCHHHHHHHHHHH
Confidence 457789999997 69999999 99999999999999999 999999999999986542 356889999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+.++. .++++|++||+|||+.|+|++ +.+++ +.+||.++++|||.+.+++.+++.....
T Consensus 104 ~~~~~--~~~v~~~~~Gsea~~~ai~~a-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 162 (429)
T 3k28_A 104 ERVPS--IEIVRMVNSGTEATMSALRLA-RGYTG------------------RNKILKFIGCYHGHGDSLLIKAGSGVAT 162 (429)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHT------------------CCEEEEEETCCCCSCGGGCSSCCTTC--
T ss_pred HhCCC--CCEEEEeCChHHHHHHHHHHH-HHhhC------------------CCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 98863 589999999999999999999 65543 3589999999999999999887754322
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .|...+ +|..... ....++|||+ +.+++.+++
T Consensus 163 ~~--~~~~~~--------------------~~~~~~~---~~~~~~~~d~------------------~~le~~l~~--- 196 (429)
T 3k28_A 163 LG--LPDSPG--------------------VPEGVAK---NTITVAYNDL------------------ESVKYAFEQ--- 196 (429)
T ss_dssp -----CCCTT--------------------CCHHHHT---TEEEEETTCH------------------HHHHHHHHH---
T ss_pred cC--CCCcCC--------------------CCCcccC---ceeecCCCCH------------------HHHHHHHHh---
Confidence 11 010000 0000000 0001224442 567777763
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++++||+||+ ++++|+++++++|+++|+++|++||++||+|||++|| |+|.+++++++++.||++|+||++++
T Consensus 197 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 272 (429)
T 3k28_A 197 --FGDDIACVIVEPV-AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGG 272 (429)
T ss_dssp --HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGT
T ss_pred --CCCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcC
Confidence 3468999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh-------H------------------------------HHHHHHHHHHHcCCCeeEEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS-------K------------------------------LWDLELIQQISSHRTVQRVV 736 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~-------~------------------------------~~~~~l~~~l~~~~~v~~vr 736 (818)
| +|+|++++++++++.+.... . .+.+.+.+.+..++.+..++
T Consensus 273 G-~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 351 (429)
T 3k28_A 273 G-LPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAEKHGIPHHIN 351 (429)
T ss_dssp T-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred C-CCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 9 79999999999998874311 0 01112222234567888999
Q ss_pred eeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 737 ALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 737 g~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.|+++++++...... ..++...+..+++.|+++||++++.+ +.+|+ ++.+|++|+++++++|+++++++
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~--~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 352 RAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFL--STVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCC--CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred eeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEE--ECCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998654210 11334456788999999999999864 55655 68999999999999999988654
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=423.44 Aligned_cols=374 Identities=16% Similarity=0.146 Sum_probs=258.8
Q ss_pred EEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc--cccCCC--CCChhHHHHHHHH
Q 003466 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPE--NVYEPALECAELL 452 (818)
Q Consensus 377 ~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~--~~~~~~--~~~~~~~eLae~L 452 (818)
.++++++|. ++||.||+ +||||++|+|+.++||+ ||+|++|+++|+.+.. +.+..+ ...+.+.+++++|
T Consensus 47 ~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l 119 (472)
T 1ohv_A 47 CNYEESRGN--YLVDVDGN----RMLDLYSQISSIPIGYS-HPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESL 119 (472)
T ss_dssp BCGGGCBBT--EEEBTTSC----EEEESSHHHHTCSSCBT-CHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTG
T ss_pred ceEEEEEcC--EEEeCCCC----EEEECCCCHhhcccCCC-CHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH
Confidence 356677776 79999999 99999999999999999 9999999999986542 222111 1356677777778
Q ss_pred HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhc--cccc--cc-ccC-CCcccccc--ceEEEEEcCCCCCCccccc
Q 003466 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD--HEVL--VD-FLG-KDTTEKCI--ELKVLALKGSYHGDTLGAM 524 (818)
Q Consensus 453 ~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~--~G~~--~~-~~~-~~~~~~~~--r~~II~~~~sYHG~t~~al 524 (818)
+++.+.+ .++|+|++||+|||++|||+| +.|+.. +|.. .+ ++. ......++ |.+||+++++|||++.+++
T Consensus 120 ~~~~~~~-~~~v~f~~sGseA~~~Aik~a-~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~ 197 (472)
T 1ohv_A 120 LSVAPKG-MSQLITMACGSCSNENAFKTI-FMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCL 197 (472)
T ss_dssp GGGCCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHH
T ss_pred HHhCCCC-cCEEEEeCCchhHHHHHHHHH-HHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHH
Confidence 8876543 689999999999999999999 544320 1100 00 000 00000023 5799999999999999999
Q ss_pred cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHH
Q 003466 525 EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604 (818)
Q Consensus 525 s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~L 604 (818)
++++...++.. + ++.+ +..++++|. ++.+. ..+..||+ .+.....+.|
T Consensus 198 ~~~g~~~~~~~---------~--~~~~------~~~~~~~p~-~~~~~--~~~~~~~~------------~~~~~d~~~l 245 (472)
T 1ohv_A 198 ATTHSKAIHKI---------D--IPSF------DWPIAPFPR-LKYPL--EEFVKENQ------------QEEARCLEEV 245 (472)
T ss_dssp HHCCSCHHHHT---------T--SCCC------CCCEECCCC-CCSSG--GGCHHHHH------------HHHHHHHHHH
T ss_pred hcCCCcccccc---------C--CCCC------CCcccCCCc-ccCcc--ccccccch------------hHHHHHHHHH
Confidence 99976533211 0 0000 011222221 00000 00000111 1112234678
Q ss_pred HHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCC--C
Q 003466 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV--P 682 (818)
Q Consensus 605 e~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~--P 682 (818)
++.|.... ....++++||+||+ ++++|+++++++|+++|+++|++||++||+|||||||||+|.+|+++++|+. |
T Consensus 246 ~~~l~~~~--~~~~~~~~vive~v-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~ 322 (472)
T 1ohv_A 246 EDLIVKYR--KKKKTVAGIIVEPI-QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPA 322 (472)
T ss_dssp HHHHHHHH--HTTCCEEEEEECSS-BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCC
T ss_pred HHHHHhcC--CCCCCEEEEEEcCC-cCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCC
Confidence 88776310 00127999999998 9999999999999999999999999999999999999999999999999997 9
Q ss_pred cEEEeccc-ccCCccccceeecchHHHh--hcc-CCh----H-----------H------------HHHHHHHHH----H
Q 003466 683 DIACYGKL-LTGGVIPLAATLATNAVFD--SFV-GDS----K-----------L------------WDLELIQQI----S 727 (818)
Q Consensus 683 DivtlgKg-LggGy~PlsAvl~~~~i~~--~l~-~~~----~-----------~------------~~~~l~~~l----~ 727 (818)
|++||||+ ||||| ++ ++++.. .+. ... . . +.+.+.+.+ .
T Consensus 323 Di~t~sK~~l~GG~-~~-----~~~~~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 396 (472)
T 1ohv_A 323 DVMTFSKKMMTGGF-FH-----KEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQA 396 (472)
T ss_dssp SEEEECGGGSSEEE-EE-----CGGGSCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEccccccCCc-cC-----chhhcccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 89996 32 444421 010 000 0 0 011122223 2
Q ss_pred cCC-CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 728 SHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 728 ~~~-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.++ .+..+++.|+++++++... ..+..+++.|+++||++.+.+ +.||++||+.+|++||++++++|++++
T Consensus 397 ~~~~~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 397 RYPQFISRVRGRGTFCSFDTPDE--------SIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp HCTTTCEEEEEETTEEEEECSSH--------HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCcEEeecCCceEEEEEeCCh--------hHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456 4788999999999987532 346678999999999999975 899999999999999999999999988
Q ss_pred HHH
Q 003466 806 EEF 808 (818)
Q Consensus 806 ~~l 808 (818)
+++
T Consensus 469 ~~~ 471 (472)
T 1ohv_A 469 ADF 471 (472)
T ss_dssp HTC
T ss_pred Hhc
Confidence 653
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=407.59 Aligned_cols=363 Identities=23% Similarity=0.276 Sum_probs=283.4
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. ++||.+|+ +|||++++++++++||+ ||+|++|+.+|++++.+.++..+.++...+|+++|++
T Consensus 25 ~~~~~~~~~G~--~v~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 97 (439)
T 3dxv_A 25 FPLAISGGRGA--RLIEENGR----ELIDLSGAWGAASLGYG-HPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLA 97 (439)
T ss_dssp SCCEEEEEEBT--EEEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHH
T ss_pred CCceEEEeeeC--EEEeCCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 46788999987 69999999 99999999999999999 9999999999999887655455678899999999999
Q ss_pred ccCCCCC-CcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC--
Q 003466 455 GVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-- 531 (818)
Q Consensus 455 ~~~~~~l-~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~-- 531 (818)
..+.+ . ++++|++||+||++.|++++ +.+++ +.+||+++++|||.+.+++++++...
T Consensus 98 ~~~~~-~~~~v~~~~ggsea~~~al~~~-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 157 (439)
T 3dxv_A 98 SFPGE-GTHKIWFGHSGSDANEAAYRAI-VKATG------------------RSGVIAFAGAYHGCTVGSMAFSGHSVQA 157 (439)
T ss_dssp TTTCT-TTEEEEEESSHHHHHHHHHHHH-HHHHS------------------CCEEEEETTCCCCSSHHHHCC-------
T ss_pred hCCCC-CCCEEEEeCCHHHHHHHHHHHH-HHHhC------------------CCEEEEECCCCCCCcHHHHhhcCCCchh
Confidence 88643 4 69999999999999999998 55543 34899999999999999999987654
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
++..+ .|. ..+..+++.|+++. +. . .+ ...+.|++.+++
T Consensus 158 ~~~~~-~~~---------------~~~~~~~~~~~~~~------------~~--------~-~~---~d~~~le~~l~~- 196 (439)
T 3dxv_A 158 DAAKA-DGL---------------ILLPYPDPYRPYRN------------DP--------T-GD---AILTLLTEKLAA- 196 (439)
T ss_dssp -------CE---------------EEECCCCSSSCBTT------------BT--------T-SH---HHHHHHHHHHHT-
T ss_pred hcccc-CCC---------------CCCcEEcCCCcccc------------cc--------c-HH---HHHHHHHHHHHh-
Confidence 33321 000 01112223332210 00 0 00 124678888842
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccc
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgL 691 (818)
.+.+++++|++||+ ++++|.+.++++|+++|+++|++||++||+||||+||||+|++++++++++.||++++||++
T Consensus 197 ---~~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~ 272 (439)
T 3dxv_A 197 ---VPAGSIGAAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGL 272 (439)
T ss_dssp ---SCTTCEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGG
T ss_pred ---cCCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchh
Confidence 44678999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccceeecchHHHhhccCC-------hH---------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 692 TGGVIPLAATLATNAVFDSFVGD-------SK---------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 692 ggGy~PlsAvl~~~~i~~~l~~~-------~~---------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
++|+ |+|++++++++++.+... .. .+.+.+.+....++.+..+++
T Consensus 273 ~~G~-riG~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 351 (439)
T 3dxv_A 273 GGGL-PLSAVIAPAEILDCASAFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRG 351 (439)
T ss_dssp GTTS-CCEEEEEEHHHHTSCSSSSCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cCCc-ceEEEEECHHHHhhhcCCCcCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 9995 999999999998876532 00 011122222345788899999
Q ss_pred eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.|.++.+++..+.....++...+..+++.|+++||++.+.+ +.+|++|++.+|++|+++++++|+++++++..
T Consensus 352 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 352 RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999965422222334557789999999999999865 89999999999999999999999999987753
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=402.94 Aligned_cols=351 Identities=16% Similarity=0.198 Sum_probs=274.7
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. ++||.+|+ +||||++++|++++||+ ||+|++|+.+|++++.+. ++.++...+|+++|+
T Consensus 33 ~~p~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~ 102 (427)
T 3fq8_A 33 GQPIVFDRVKDA--YAWDVDGN----RYIDYVGTWGPAICGHA-HPEVIEALKVAMEKGTSF---GAPCALENVLAEMVN 102 (427)
T ss_dssp SCCCCEEEEEBT--EEEETTSC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeeeC--EEEECCCC----EEEECCCchhhhccCCC-CHHHHHHHHHHHHhCCCc---CCCCHHHHHHHHHHH
Confidence 457789999997 69999999 99999999999999999 999999999999987543 247889999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+..+. .++++|++||+||++.|+|+| +.+++ +.+||+++++|||.+..++.+++.....
T Consensus 103 ~~~~~--~~~v~~~~ggsea~~~al~~a-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (427)
T 3fq8_A 103 DAVPS--IEMVRFVNSGTEACMAVLRIM-RAYTG------------------RDKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEEETCCCCSCGGGCSSCCTHHHH
T ss_pred HhCCC--CCEEEEeCCHHHHHHHHHHHH-HHhhC------------------CCEEEEECCCcCCCCHHHHHhcCCcccc
Confidence 98863 589999999999999999999 66654 3589999999999999888877643221
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .|+..+ +|...... ...++|||+ +.|++.+++
T Consensus 162 ~~--~~~~~~--------------------~~~~~~~~---~~~~~~~d~------------------~~le~~l~~--- 195 (427)
T 3fq8_A 162 LG--LPSSPG--------------------VPKKTTAN---TLTTPYNDL------------------EAVKALFAE--- 195 (427)
T ss_dssp HT--CCSCSS--------------------SCHHHHTT---EEEEETTCH------------------HHHHHHHHH---
T ss_pred cC--CCCCCC--------------------CCCcccCc---eeecCCCCH------------------HHHHHHHHh---
Confidence 10 011000 00000000 001124442 567778863
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++++|++||+ ++.+|++.++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++|+||++++
T Consensus 196 --~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 271 (427)
T 3fq8_A 196 --NPGEIAGVILEPI-VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGG 271 (427)
T ss_dssp --STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGT
T ss_pred --CCCCEEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhC
Confidence 4568999999998 8999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh------H--------------------------------HHHHHHHHHHHcCCCeeEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS------K--------------------------------LWDLELIQQISSHRTVQRV 735 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~------~--------------------------------~~~~~l~~~l~~~~~v~~v 735 (818)
| +|+|++++++++++.+.... . .+.+.+.+.+..++.+..+
T Consensus 272 G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 350 (427)
T 3fq8_A 272 G-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACG 350 (427)
T ss_dssp T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred C-cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9 69999999999998876310 0 0111222223345667789
Q ss_pred EeeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++.|+++++++...... ..++...+..+++.|+++||++++.+. .|+.+++.+|++|+++++++|++++++
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 351 GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC-CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 99999999998653211 122334567889999999999998763 256789999999999999999998865
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=395.83 Aligned_cols=340 Identities=21% Similarity=0.287 Sum_probs=274.9
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. ++||.+|+ +||||+++++++++||+ ||+|++|+.++++++.+.. ..+.++...+++++|++
T Consensus 18 ~~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 89 (395)
T 3nx3_A 18 FDIVLEKGQGV--YLFDDKAK----KYLDFSSGIGVCALGYN-HAKFNAKIKAQVDKLLHTS-NLYYNENIAAAAKNLAK 89 (395)
T ss_dssp CSCBEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBS-CHHHHHHHHHHHTTCSCCC-TTSBCHHHHHHHHHHHH
T ss_pred CCceEEeeeee--EEEECCCC----EEEECCCcHHhccCCCC-CHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHH
Confidence 45688898887 69999999 99999999999999999 9999999999999877654 23568899999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
..+ .++++|++||+||++.|++++ +.++...| +++.+||+++++|||.+..++++++...++.
T Consensus 90 ~~~---~~~v~~~~gg~ea~~~al~~~-~~~~~~~g-------------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 152 (395)
T 3nx3_A 90 ASA---LERVFFTNSGTESIEGAMKTA-RKYAFNKG-------------VKGGQFIAFKHSFHGRTLGALSLTANEKYQK 152 (395)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTT-------------CTTCEEEEETTCCCCSSHHHHTTCCCHHHHG
T ss_pred hcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhccC-------------CCCCEEEEEcCCcCCCCHHHHhhcCCccccc
Confidence 987 379999999999999999998 55533322 2356899999999999999999887544332
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ .+. ..+..++ +++|+ +.|++.+.
T Consensus 153 ~~-~~~---------------~~~~~~~----------------~~~d~------------------~~l~~~l~----- 177 (395)
T 3nx3_A 153 PF-KPL---------------ISGVKFA----------------KYNDI------------------SSVEKLVN----- 177 (395)
T ss_dssp GG-CSC---------------CSCEEEE----------------CTTCH------------------HHHHTTCC-----
T ss_pred cc-CCC---------------CCCcEEe----------------CCCCH------------------HHHHHhcc-----
Confidence 20 000 0011111 13442 55665552
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++|++||+ ++++|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++|+||++++|
T Consensus 178 ---~~~~~v~~~~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G 253 (395)
T 3nx3_A 178 ---EKTCAIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCG 253 (395)
T ss_dssp ---TTEEEEEEESE-ECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTTT
T ss_pred ---CCeEEEEEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccCC
Confidence 57899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHH-HhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEee
Q 003466 695 VIPLAATLATNAV-FDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 695 y~PlsAvl~~~~i-~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~ 738 (818)
+|+|++++++++ ++.+..... .+.+.+.+.+..++.+..+++.
T Consensus 254 -~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 332 (395)
T 3nx3_A 254 -LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGL 332 (395)
T ss_dssp -SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeE
Confidence 699999999999 777653211 0111122223456888899999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
|.++.+++... ..+..+.+.|+++||++++. ++.+|++|++.+|++|+++++++|++++++
T Consensus 333 g~~~~~~~~~~--------~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 333 GFMQGLSLDKS--------VKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TTEEEEEECTT--------SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeCCc--------chHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999753 12567889999999999987 489999999999999999999999998763
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=399.93 Aligned_cols=359 Identities=20% Similarity=0.266 Sum_probs=272.8
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
+.++..+++|++|.. .|+++++++|. ++||.+|+ +|||+.+++|++++||+ ||+|++|+.+|++++
T Consensus 24 ~~~~~~~~~~~~~~~-------~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~ai~~~~~~~ 89 (420)
T 2pb2_A 24 TRATFDEVILPVYAP-------ADFIPVKGKGS--RVWDQQGK----EYIDFAGGIAVTALGHC-HPALVEALKSQGETL 89 (420)
T ss_dssp ----------------------CCSCEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhccccC-------CCceEEeeecC--EEEECCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhc
Confidence 334455666765542 46678898887 79999999 99999999999999999 999999999999987
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
.+.+. .+.++...+|+++|+++.+ .++++|++||+||++.|++++ +.++..+|. +++.+||++
T Consensus 90 ~~~~~-~~~~~~~~~l~~~la~~~g---~~~v~~~~ggteA~~~al~~~-~~~~~~~~~------------~g~~~vi~~ 152 (420)
T 2pb2_A 90 WHTSN-VFTNEPALRLGRKLIDATF---AERVLFMNSGTEANETAFKLA-RHYACVRHS------------PFKTKIIAF 152 (420)
T ss_dssp CCCCT-TSCCHHHHHHHHHHHHHSS---CSEEEEESSHHHHHHHHHHHH-HHHHHHHTC------------TTCCEEEEE
T ss_pred ccccC-ccCCHHHHHHHHHHHhhCC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccC------------CCCCEEEEE
Confidence 66432 3567899999999999986 479999999999999999998 544333222 345689999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+++|||.+..++++++.+.++..| .|. . .+...+ +++|+
T Consensus 153 ~~~yh~~~~~~~~~~g~~~~~~~~-~p~-------~--------~~~~~~----------------~~~d~--------- 191 (420)
T 2pb2_A 153 HNAFHGRSLFTVSVGGQPKYSDGF-GPK-------P--------ADIIHV----------------PFNDL--------- 191 (420)
T ss_dssp TTCCCCSSHHHHHHSSCHHHHTTS-SSC-------C--------SCEEEE----------------CTTCH---------
T ss_pred eCCcCCcCHHHHHhcCCccccccC-CCC-------C--------CCeEEe----------------cCCCH---------
Confidence 999999999888887754332210 000 0 011111 13332
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
+.|++.+. +++++|++||+ ++.||+++++++++++|+++|++||++||+|||++||||+|++
T Consensus 192 ---------~~le~~i~--------~~~~~vi~~p~-~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~ 253 (420)
T 2pb2_A 192 ---------HAVKAVMD--------DHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253 (420)
T ss_dssp ---------HHHHHHCC--------TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred ---------HHHHHHhc--------cCceEEEEeCC-cCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence 56776663 37899999998 9999998899999999999999999999999999999999999
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH----------------HH---------------HHH
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK----------------LW---------------DLE 721 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~----------------~~---------------~~~ 721 (818)
++++.+++.||++||||++++| +|+|++++++++++.+..... .+ .+.
T Consensus 254 ~~~~~~~~~~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~ 332 (420)
T 2pb2_A 254 FAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQ 332 (420)
T ss_dssp SHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEecccccCC-CceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8888999999999999999999 699999999999887754211 00 011
Q ss_pred HHHHHH----cCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHH
Q 003466 722 LIQQIS----SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQ 796 (818)
Q Consensus 722 l~~~l~----~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~ 796 (818)
+.+.++ .++.+..+++.|.++.+++..... ..+..+++.|+++||++.+. ++.+|++||+.+|++|+++
T Consensus 333 l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~------~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~ 406 (420)
T 2pb2_A 333 FVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYK------GRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHE 406 (420)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGT------TCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEecceEEEEEECCCch------HHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHH
Confidence 223332 346778899999999999864310 12557889999999999987 4899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003466 797 LLLKLYQRLEEF 808 (818)
Q Consensus 797 ~~~~l~~~l~~l 808 (818)
++++|+++++++
T Consensus 407 ~~~~l~~~l~~~ 418 (420)
T 2pb2_A 407 GMQRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=399.89 Aligned_cols=357 Identities=18% Similarity=0.212 Sum_probs=270.2
Q ss_pred EeecCCeeEEEe-CCcCccccceeecccccccccCCCCCCHHHH-H-HHHH---hhhhcccccCCCCCChhHHHHHHHHH
Q 003466 380 DSRCGENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELA-R-DMGY---TAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 380 ~~~~G~~~~v~D-~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~-e-Ai~~---q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
.+++|. ++|| .+|+ +|||+++++|++++||+ ||+|+ + |+.+ |++++.+.+ ..+.++...+++++|+
T Consensus 40 ~~~~g~--~~~d~~~g~----~ylD~~~~~~~~~lG~~-~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la 111 (449)
T 2cjg_A 40 TRSGGS--YLVDAITGR----RYLDMFTFVASSALGMN-PPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFA 111 (449)
T ss_dssp TTCBBT--EEEBTTTCC----EEEESSHHHHTCSSCBS-CHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHH
T ss_pred eeeeeC--EEEECCCCc----EEEEccCCccccCCCCC-CHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHH
Confidence 356665 7999 9999 99999999999999999 99999 9 9999 998876544 3467888999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCC-CCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPY 532 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~-~~~ 532 (818)
++++....++|+|++||+|||+.|+|++ +.|++.+|...+ .+.+.+.+||+++++|||.+.+++++++. +.+
T Consensus 112 ~~~~~~~~~~v~~~~~gseA~~~aik~a-~~~~~~~~~~~~------~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~ 184 (449)
T 2cjg_A 112 RVLGDPALPHLFFVEGGALAVENALKAA-FDWKSRHNQAHG------IDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTI 184 (449)
T ss_dssp HHHCCTTCCEEEEESSHHHHHHHHHHHH-HHHHHHHHHHTT------SCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHH
T ss_pred HhcCCCCCCEEEEeCchHHHHHHHHHHH-HHHhcccccccc------cccCCCCEEEEECCCcCCcccchhhhcCCchhh
Confidence 9885212579999999999999999999 666652100000 00023568999999999999999999875 222
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccC--ccc-hhhcccCchhHHHHHHHHHHHHHh
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS--RDE-IFYEERDSSDLASIYSSYISQNLL 609 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd--~~~-~~~~~~~~~~~~~~~~~~Le~~L~ 609 (818)
+..+ .|. .++..+++ |+| .+. .|. .....+.+.|++.|+
T Consensus 185 ~~~~-~~~---------------~~~~~~~~----------------~~d~~~~~~~~~------~~~~~~~~~le~~i~ 226 (449)
T 2cjg_A 185 TARF-PKF---------------DWPRIDAP----------------YMRPGLDEPAMA------ALEAEALRQARAAFE 226 (449)
T ss_dssp HTTS-CCC---------------CCCEECCC----------------CCCTTCCHHHHH------HHHHHHHHHHHHHHH
T ss_pred cccC-CCC---------------CCCcEEEc----------------CCCchhhccccc------hhhHHHHHHHHHHHH
Confidence 2210 000 01112222 232 110 110 111233466888886
Q ss_pred cCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecc
Q 003466 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689 (818)
Q Consensus 610 ~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK 689 (818)
+ +.+++++|++||+ ++.+|+++++++|+++|+++|++||++||+||||+||||+|++|+++++++.||++|+||
T Consensus 227 ~-----~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK 300 (449)
T 2cjg_A 227 T-----RPHDIACFVAEPI-QGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGK 300 (449)
T ss_dssp H-----STTTEEEEEECSE-ETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECG
T ss_pred h-----cCCceEEEEEeCc-CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecC
Confidence 3 2468999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccceeecchHHHhh----c-cCChH----------------HH---------------HHHHHHHHH----cC
Q 003466 690 LLTGGVIPLAATLATNAVFDS----F-VGDSK----------------LW---------------DLELIQQIS----SH 729 (818)
Q Consensus 690 gLggGy~PlsAvl~~~~i~~~----l-~~~~~----------------~~---------------~~~l~~~l~----~~ 729 (818)
++ |+|++++++++++. + ..... .+ .+.+.+.++ .+
T Consensus 301 ~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 375 (449)
T 2cjg_A 301 KT-----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF 375 (449)
T ss_dssp GG-----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cc-----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 98 89999999999885 2 11100 00 011223332 46
Q ss_pred CC-eeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 730 RT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 730 ~~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+. +..+++.|.++++++... ..+..+++.|+++||++.+.| +.+|++|++.+|++||++++++|++++++
T Consensus 376 ~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 376 PAVVLDPRGRGLMCAFSLPTT--------ADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp TTTSEEEEEETTEEEEECSSH--------HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCceeeEeeccEEEEEEECCh--------HHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 76 788999999999988532 235678999999999999975 89999999999999999999999998865
Q ss_pred H
Q 003466 808 F 808 (818)
Q Consensus 808 l 808 (818)
+
T Consensus 448 ~ 448 (449)
T 2cjg_A 448 V 448 (449)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=392.60 Aligned_cols=365 Identities=20% Similarity=0.224 Sum_probs=279.1
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|+++.+++|. ++||.+|+ +|||+.+++|+.++||+ ||+|++|+.++++++.+.. .++.++...+|+++|+++
T Consensus 26 ~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 97 (433)
T 1zod_A 26 PMIIERAKGS--FVYDADGR----AILDFTSGQMSAVLGHC-HPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANI 97 (433)
T ss_dssp SSCCCEEEBT--EEECTTCC----EEEETTHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHH
T ss_pred CceEEEeecC--EEEeCCCC----EEEEcccchhccccCCC-CHHHHHHHHHHHHhCcccc-cccCCHHHHHHHHHHHHh
Confidence 5567788886 79999999 99999999999999999 9999999999998876532 356688899999999999
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCc
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~ 535 (818)
++.+ .++|+|++||+||++.|++++ +.+++ +.+||+++++|||.+.+++++++...+ ..
T Consensus 98 ~~~~-~~~v~~~~gg~ea~~~a~~~~-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~~-~~ 156 (433)
T 1zod_A 98 TPPG-LDRALLLSTGAESNEAAIRMA-KLVTG------------------KYEIVGFAQSWHGMTGAAASATYSAGR-KG 156 (433)
T ss_dssp SCTT-CCEEEEESCHHHHHHHHHHHH-HHHHT------------------CCEEEEETTCCCCSSHHHHHTCCSSCC-SS
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHhhC------------------CCeEEEECCCcCCCChhHHhhcCCccc-cc
Confidence 8743 579999999999999999988 55543 248999999999999999988865421 11
Q ss_pred CCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 003466 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (818)
Q Consensus 536 ~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~ 615 (818)
+. . ...+..+++.|..++. .|+|. .+.......+.+++.+++ .
T Consensus 157 -----~~---~--------~~~~~~~v~~~~~~~~--------~~~~~---------~~~~~~~d~~~le~~l~~----~ 199 (433)
T 1zod_A 157 -----VG---P--------AAVGSFAIPAPFTYRP--------RFERN---------GAYDYLAELDYAFDLIDR----Q 199 (433)
T ss_dssp -----SC---C--------CCTTEEEECCCCTTSC--------CCEET---------TEECHHHHHHHHHHHHHH----H
T ss_pred -----cC---C--------CCCCceEecCCccccc--------ccCCc---------hhhhHHHHHHHHHHHHHh----c
Confidence 00 0 0123344555544321 12320 001111224677777763 1
Q ss_pred CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCc
Q 003466 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (818)
Q Consensus 616 ~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy 695 (818)
+++++++|++||+ ++.+|+++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++++||++++|
T Consensus 200 ~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G- 277 (433)
T 1zod_A 200 SSGNLAAFIAEPI-LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG- 277 (433)
T ss_dssp CCSCEEEEEECSE-ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT-
T ss_pred CCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCC-
Confidence 2357999999998 89999999999999999999999999999999999999999988889999999999999999999
Q ss_pred cccceeecchHHHhhccC------ChH---------------HH------------HHHHHHHHH----cCCCeeEEEee
Q 003466 696 IPLAATLATNAVFDSFVG------DSK---------------LW------------DLELIQQIS----SHRTVQRVVAL 738 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~~------~~~---------------~~------------~~~l~~~l~----~~~~v~~vrg~ 738 (818)
+|+|++++++++++.+.. ... .+ .+.+.+.++ .++.+..+++.
T Consensus 278 ~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 357 (433)
T 1zod_A 278 LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGR 357 (433)
T ss_dssp SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 799999999999876532 110 00 011223332 45778889999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-----CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-----~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|.++.+++........++...+..+++.|+++||++.+.+ +.+|++|++.+|++||++++++|+++++++
T Consensus 358 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 358 GLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp TTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999864310000111346678899999999998853 899999999999999999999999988654
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=385.63 Aligned_cols=376 Identities=27% Similarity=0.422 Sum_probs=283.9
Q ss_pred hhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccc
Q 003466 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (818)
Q Consensus 356 ~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~ 435 (818)
.+++++|+|++.+.. ..++.++.+++|. ++||.+|+ +|||+.++.|++++||+ ||+|++|+.++++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~~~~~~~~g~--~~~d~~g~----~ylD~~~~~~~~~lg~~-~p~v~~a~~~~~~~~~~~ 78 (429)
T 1s0a_A 8 FDQRHILHPFTSMTS--PLPVYPVVSAEGC--ELILSDGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHV 78 (429)
T ss_dssp HHHHHBCCTTCCSSS--CCCCEEEEEEEBT--EEEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHHCSCC
T ss_pred HHHHhhccccccccc--cCCceeEEeeeee--EEEeCCCC----EEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccc
Confidence 344678999987543 1233448888887 69999999 99999999999999999 999999999999886543
Q ss_pred cCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCC
Q 003466 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (818)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~s 515 (818)
.+.++.++...+++++|+++++.+ .++++|++||+||++.|++++ +.+++.+|. + +.+||+++.+
T Consensus 79 ~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggtea~~~ai~~~-~~~~~~~g~------------~-~~~vi~~~~~ 143 (429)
T 1s0a_A 79 MFGGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKGE------------A-RQRFLTFRNG 143 (429)
T ss_dssp CCSSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHTC------------C-CCEEEEETTC
T ss_pred cccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHhcccCC------------C-CCeEEEECCC
Confidence 333456788899999999998633 579999999999999999988 656542221 1 3589999999
Q ss_pred CCCCccccccccCCCC-CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCch
Q 003466 516 YHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (818)
Q Consensus 516 YHG~t~~als~tg~~~-~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~ 594 (818)
|||.+..++++++... ++.. +.+ . ..+...++.|..... ++..++|
T Consensus 144 yh~~~~~~~~~~~~~~~~~~~-----~~~---~--------~~~~~~~~~~~~~~~-----~~~~~~d------------ 190 (429)
T 1s0a_A 144 YHGDTFGAMSVCDPDNSMHSL-----WKG---Y--------LPENLFAPAPQSRMD-----GEWDERD------------ 190 (429)
T ss_dssp CCCSSHHHHTTSCTTTTTGGG-----GTT---T--------SCCCEEECCCCSBC------CCCCGGG------------
T ss_pred CCCCchhhhhhcCCchhhccc-----ccC---C--------CCCceEeCCCccccc-----ccchHHH------------
Confidence 9999998888876432 2211 000 0 011223333321000 0000122
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch
Q 003466 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (818)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a 674 (818)
.+.+++.+.+ +++++++|++||++++.+|.++++++|+++|+++|++||++||+||||+||||+|.+++
T Consensus 191 ------~~~l~~~l~~-----~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~ 259 (429)
T 1s0a_A 191 ------MVGFARLMAA-----HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259 (429)
T ss_dssp ------GHHHHHHHHH-----HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred ------HHHHHHHHHh-----CCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHH
Confidence 1556677752 23578999999965788999999999999999999999999999999999999999888
Q ss_pred hcccCCCCcEEEecccccCCccccceeecchHHHhhccCC---------hH---------------H------------H
Q 003466 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD---------SK---------------L------------W 718 (818)
Q Consensus 675 ~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~---------~~---------------~------------~ 718 (818)
++++++.||++|+||+++|||+|+|++++++++++.+... .. . +
T Consensus 260 ~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~ 339 (429)
T 1s0a_A 260 CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADI 339 (429)
T ss_dssp GGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8889999999999999999988999999999988766431 10 0 0
Q ss_pred HHHHHHHHHc---CCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHH
Q 003466 719 DLELIQQISS---HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCS 795 (818)
Q Consensus 719 ~~~l~~~l~~---~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId 795 (818)
.+.+.+.++. ++.+..+++.|.++.+++... ..+..+.+.|+++||++++.++.+|++|++.+|++|++
T Consensus 340 ~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~Gi~v~~~~~~iRis~~~~~t~e~i~ 411 (429)
T 1s0a_A 340 EVQLREQLAPARDAEMVADVRVLGAIGVVETTHP--------VNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQ 411 (429)
T ss_dssp HHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSC--------BCHHHHHHHHHHTTEECCCBTTEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEEeeEEEEEEECCc--------ccHHHHHHHHHHCCCEEeccCCEEEEECCCCCCHHHHH
Confidence 1123344443 366777899999999988542 11456888899999999998899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003466 796 QLLLKLYQRLEE 807 (818)
Q Consensus 796 ~~~~~l~~~l~~ 807 (818)
+++++|++++++
T Consensus 412 ~~~~~l~~~~~~ 423 (429)
T 1s0a_A 412 RLTAAVNRAVQD 423 (429)
T ss_dssp HHHHHHHHHTSS
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=388.53 Aligned_cols=351 Identities=19% Similarity=0.208 Sum_probs=266.1
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +|||+.+++|++++||+ ||+|++|+.+|+++..+ .++.++...+++++|++
T Consensus 38 ~p~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~ 107 (434)
T 2epj_A 38 YPFYVKRGEGA--YLYTVDGA----RIVDLVLAYGPLILGHK-HPRVLEAVEEALARGWL---YGAPGEAEVLLAEKILG 107 (434)
T ss_dssp SCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEECCCC----EEEEcccchhcccCCCC-CHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHH
Confidence 36788899887 69999999 99999999999999999 99999999999988422 24568889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+++ + .++++|++||+||++.|+++| |.+++ +.+||+++++|||.+..++++++......
T Consensus 108 ~~~-~-~~~v~~~~sgseA~~~al~~a-r~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 166 (434)
T 2epj_A 108 YVK-R-GGMIRFVNSGTEATMTAIRLA-RGYTG------------------RDLILKFDGCYHGSHDAVLVAAGSAAAHY 166 (434)
T ss_dssp HHC-T-TCEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEEETCCCCSSGGGSEECC------
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhC------------------CCeEEEEcCCcCCCCHHHHHhcCCCcccc
Confidence 885 2 589999999999999999998 66654 24899999999999998887775432111
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. .|+.. + .+.. .... .+. ++|+|+ +.+++.|++
T Consensus 167 ~--~p~~~--g----~~~~-~~~~--~~~--------------~~~~d~------------------~~le~~l~~---- 199 (434)
T 2epj_A 167 G--VPTSA--G----VPEA-VARL--TLV--------------TPYNDV------------------EALERVFAE---- 199 (434)
T ss_dssp C--EESST--T----CCHH-HHTT--EEE--------------EETTCH------------------HHHHHHHHH----
T ss_pred C--CCCCC--C----CCCc-ccCc--eEe--------------cCCCCH------------------HHHHHHHHh----
Confidence 0 01100 0 0000 0000 001 113442 567777762
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++++||+||+ ++.+|+++++++|+++|+++|++||++||+||||+|| |+|++++++++|+.||++++||++++|
T Consensus 200 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G 276 (434)
T 2epj_A 200 -YGDRIAGVIVEPV-IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG 276 (434)
T ss_dssp -HGGGEEEEEECSS-BCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTT
T ss_pred -CCCCEEEEEEeCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCC
Confidence 2357999999998 8989999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCC-------hH---------------HH------------HHHHHHHHHc----CCCeeEEE
Q 003466 695 VIPLAATLATNAVFDSFVGD-------SK---------------LW------------DLELIQQISS----HRTVQRVV 736 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~-------~~---------------~~------------~~~l~~~l~~----~~~v~~vr 736 (818)
+|+|++++++++++.+... .. .+ .+.+.+.+++ ++.+..++
T Consensus 277 -~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 355 (434)
T 2epj_A 277 -FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTIN 355 (434)
T ss_dssp -SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred -cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 7999999999999877541 10 01 0112233332 36666789
Q ss_pred eeeeEEEEEEecCcc-----cCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 737 ALGTLCAIELQAAGC-----NAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 737 g~Gl~~~iel~~~~~-----~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.|.++.+++..... ...++...+..+++.|+++||++.+.+. .++.+++.+|++|+++++++|+++++++
T Consensus 356 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 356 RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL-EAVFTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-SCEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred EeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC-CcEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999964210 0001123466789999999999998652 1356789999999999999999998775
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=377.20 Aligned_cols=347 Identities=20% Similarity=0.253 Sum_probs=263.2
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +|||+.+++|++++||+ ||+|++|+.+|+++..+ .++.++...+|+++|++
T Consensus 34 ~p~~~~~~~g~--~~~d~~g~----~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~ 103 (424)
T 2e7u_A 34 TPPFLVRGEGA--YVWDADGN----RYLDYVMSWGPLILGHA-HPKVLARVRETLERGLT---FGAPSPLEVALAKKVKR 103 (424)
T ss_dssp CCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHH
Confidence 46788898887 69999999 99999999999999998 99999999999987422 24568889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+.+ + .++|+|++||+||++.|+++| |.++++ .+||+++++|||.+..++++++......
T Consensus 104 ~~~-~-~~~v~~~~~g~ea~~~al~~a-r~~~~~------------------~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 162 (424)
T 2e7u_A 104 AYP-F-VDLVRFVNSGTEATMSALRLA-RGYTGR------------------PYIVKFRGNYHGHADGLLVEAGSGALTL 162 (424)
T ss_dssp HCT-T-CCEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCCCGGGSEECCSSSCCB
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCCcHHHHHhcCCccccc
Confidence 885 3 589999999999999999998 666543 4899999999999988887765432111
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. .|+.. + .+.. .... .+. ++|+|+ +.|++.+++
T Consensus 163 ~--~p~~~--g----~~~~-~~~~--~~~--------------~~~~d~------------------~~le~~l~~---- 195 (424)
T 2e7u_A 163 G--VPSSA--G----VPEE-YAKL--TLV--------------LEYNDP------------------EGLREVLKR---- 195 (424)
T ss_dssp C--EESST--T----CCHH-HHTT--EEE--------------ECTTCH------------------HHHHHHHHH----
T ss_pred C--CCCCC--C----CCCc-cCCc--eEe--------------CCCCCH------------------HHHHHHHHh----
Confidence 0 01100 0 0000 0000 011 113442 567777752
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++++||+||+ ++.+|+++++++|+++|+++ ++||++||+||||+|| |+|.+++++++|+.||++|+||++++|
T Consensus 196 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G 271 (424)
T 2e7u_A 196 -RGEEIAAIIFEPV-VGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGG 271 (424)
T ss_dssp -HGGGEEEEEECSS-BCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT
T ss_pred -CCCCEEEEEEeCC-CCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCC
Confidence 2357999999998 88899999999999999999 9999999999999999 999989999999999999999999999
Q ss_pred ccccceeecchHHHhhccC-C------hH---------------HHH-------------HHHHHHHH----cCCCeeEE
Q 003466 695 VIPLAATLATNAVFDSFVG-D------SK---------------LWD-------------LELIQQIS----SHRTVQRV 735 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~-~------~~---------------~~~-------------~~l~~~l~----~~~~v~~v 735 (818)
+|+|++++++++++.+.. . .. .+. +.+.+.++ +++.+..+
T Consensus 272 -~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 350 (424)
T 2e7u_A 272 -LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV 350 (424)
T ss_dssp -SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred -cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 799999999999987764 1 10 111 11222332 34666678
Q ss_pred EeeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
++.|.++.+++...... ..++...+..+++.|+++||++.+.+. .++.+++.+|++|+++++++|++++
T Consensus 351 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 351 NRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF-EAAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS-SCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC-CceEeeccCCHHHHHHHHHHHHHhC
Confidence 99999999998642100 001223466789999999999998652 1356789999999999999998763
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=372.54 Aligned_cols=380 Identities=17% Similarity=0.131 Sum_probs=264.5
Q ss_pred HHHHHHHhhccchhhhcCccccccCCC-CCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHH
Q 003466 342 AYSERIQRLCDMPKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIE 420 (818)
Q Consensus 342 ~~~~r~~~~~~l~~~~~~~~~~p~t~~-~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~ 420 (818)
.+.++..++.++.++..+++....+.. ..+ ...|+++++++|. ++||.+|+ +|||+.+++|++++||+ ||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~G~--~~~d~~g~----~~iD~~~~~~~~~lg~~-~~~ 77 (453)
T 2cy8_A 6 DYKRKTEGSVFWAQRARSVMPDGVTADTRAF-DPHGLFISDAQGV--HKTDVDGN----VYLDFFGGHGALVLGHG-HPR 77 (453)
T ss_dssp HHHHHCHHHHHHHHHHHHHSCCC------CC-SSCCCCEEEEEBT--EEEETTCC----EEEESCTTTTSCTTCBT-CHH
T ss_pred HHHhcCchhHHHHHHHHhhcCCCCCcccccc-CCCCceEEEeecC--EEEECCCC----EEEECcccHhhcccCCC-CHH
Confidence 444555556666666666553211110 011 1246788888887 69999999 99999999999999999 999
Q ss_pred HHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCc
Q 003466 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (818)
Q Consensus 421 V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~ 500 (818)
|++|+.+|+++..+ .++.++...+++++|++..+ + .++|+|++||+||++.|+++| |.+++
T Consensus 78 v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~gg~eA~~~al~~a-r~~~~------------- 138 (453)
T 2cy8_A 78 VNAAIAEALSHGVQ---YAASHPLEVRWAERIVAAFP-S-IRKLRFTGSGTETTLLALRVA-RAFTG------------- 138 (453)
T ss_dssp HHHHHHHHHTTTCS---SCSSCHHHHHHHHHHHHHCT-T-CSEEEEESCHHHHHHHHHHHH-HHHHC-------------
T ss_pred HHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhC-------------
Confidence 99999999987432 24578899999999999876 3 589999999999999999998 66653
Q ss_pred cccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc
Q 003466 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (818)
Q Consensus 501 ~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~ 580 (818)
+.+||+++++|||.+..++++++.. +.. |+.. + .|.. ..... +. ++|
T Consensus 139 -----~~~vi~~~~~yhg~~~~~~~~~~~~-~~~----~~~~--g----~~~~-~~~~~--~~--------------~~~ 185 (453)
T 2cy8_A 139 -----RRMILRFEGHYHGWHDFSASGYNSH-FDG----QPAP--G----VLPE-TTANT--LL--------------IRP 185 (453)
T ss_dssp -----CCEEEEECC----------------------------------------CGGGE--EE--------------ECT
T ss_pred -----CCEEEEEcCCcCCCchhhHhhcCCc-cCC----CcCC--C----CCcc-ccCce--ee--------------cCC
Confidence 2489999999999998887766431 100 1100 0 0000 00000 01 113
Q ss_pred cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEe
Q 003466 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (818)
Q Consensus 581 nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~D 660 (818)
+|+ +.+++.+++ .++++++|++||+ ++.+|+++++++|+++|+++|++||++||+|
T Consensus 186 ~d~------------------~~le~~l~~-----~~~~~~~vi~ep~-~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~D 241 (453)
T 2cy8_A 186 DDI------------------EGMREVFAN-----HGSDIAAFIAEPV-GSHFGVTPVSDSFLREGAELARQYGALFILD 241 (453)
T ss_dssp TCH------------------HHHHHHHHH-----HGGGEEEEEECSS-EHHHHTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCH------------------HHHHHHHHh-----cCCCEEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 332 567777752 2357999999998 8888999999999999999999999999999
Q ss_pred ecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC---C----hH-----------------
Q 003466 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG---D----SK----------------- 716 (818)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~---~----~~----------------- 716 (818)
|||+|| |+|++++++++++.||++++||++++| +|+|++++++++++.+.. . ..
T Consensus 242 Ev~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~ 319 (453)
T 2cy8_A 242 EVISGF-RVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAID 319 (453)
T ss_dssp CTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHH
T ss_pred cCcccc-ccCchhhhHHhCCCCcEEEEChhhhCC-cceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHH
Confidence 999999 999988899999999999999999999 699999999999987765 1 00
Q ss_pred H-HHH-----------HHHHHHH----cCCCeeEEEeeeeEEEEEEec-----Cc------ccCCCchHHHHHHHHHHHh
Q 003466 717 L-WDL-----------ELIQQIS----SHRTVQRVVALGTLCAIELQA-----AG------CNAGYGSLYAASLLKKLRE 769 (818)
Q Consensus 717 ~-~~~-----------~l~~~l~----~~~~v~~vrg~Gl~~~iel~~-----~~------~~~~~~~~~a~~~~~~l~e 769 (818)
. +.+ .+.+.++ .++.+..+++.|.++.+++.. .. ....++...+..+++.|++
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 399 (453)
T 2cy8_A 320 TILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL 399 (453)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH
Confidence 2 211 1122232 346666789999999999964 10 0001122346678999999
Q ss_pred CCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 770 DGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 770 ~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
+||++.+.+ ++ .+++.+|++||++++++|+++++++..
T Consensus 400 ~Gv~v~~~~-~~--~l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 400 EGVDIGGRG-SV--FLSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp TTEECBTTT-EE--ECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEeCCC-CE--EeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 999997654 34 467999999999999999999987753
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=366.98 Aligned_cols=363 Identities=19% Similarity=0.236 Sum_probs=271.0
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++.+++|. ++||.+|+ +|||+.++.|++++||+.||+|++|+.+++++..+.....+.++...+|+++|++
T Consensus 24 ~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 97 (419)
T 2eo5_A 24 FPLVIDHGEGV--WIYDVDGN----KYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVT 97 (419)
T ss_dssp CCCCEEEEEBT--EEEETTSC----EEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEECCCC----EEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHH
Confidence 35678888886 69999999 9999999999999999767999999999998875533234667889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~ 533 (818)
+++....++++|++||+||++.|++++ +.++ +.+||+++.+|||.+..++++++.. .++
T Consensus 98 ~~~~~~~~~v~~~~gg~ea~~~ai~~~-~~~~-------------------~~~vi~~~p~yh~~~~~~~~~~~~~~~~~ 157 (419)
T 2eo5_A 98 YSPGNFQKKVFFSNSGTEAIEASIKVV-KNTG-------------------RKYIIAFLGGFHGRTFGSISLTASKAVQR 157 (419)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HTTS-------------------CCEEEEETTCCCCSSHHHHHHCCSCGGGG
T ss_pred hCCCCcCCEEEEeCchHHHHHHHHHHH-HHhh-------------------CCcEEEECCCcCCCCHhhHhhcCCccccc
Confidence 887431258999999999999999988 4433 2489999999999999999888754 332
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHH-HHHhcCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS-QNLLQNP 612 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le-~~L~~~~ 612 (818)
.. +.. . ..+...++.|+.++.+ |... .+ .++.+++. ...+.|+ +.+.+.
T Consensus 158 ~~-----~~~---~--------~~~~~~v~~~~~~~~~--------~g~~--~~--~~~~~~~~-~~~~~l~~~~i~~~- 207 (419)
T 2eo5_A 158 SI-----VGP---F--------MPGVIHVPYPNPYRNP--------WHIN--GY--ENPSELVN-RVIEFIEDYIFVNL- 207 (419)
T ss_dssp CS-----SCC---C--------CTTEEEECCCCSSSCT--------TCCC--TT--TCHHHHHH-HHHHHHHHTHHHHT-
T ss_pred cc-----cCC---C--------CCCCEEECCCcccccc--------cccc--cc--ccchhhHH-HHHHHHHHHHHhhc-
Confidence 21 000 0 0122333333322110 0000 00 00000111 1246777 777531
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg 692 (818)
.+++++++|++||+ ++.+|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++||||+++
T Consensus 208 --~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~ 284 (419)
T 2eo5_A 208 --VPPEEVAGIFFEPI-QGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALG 284 (419)
T ss_dssp --CCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG
T ss_pred --cCCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEeccccc
Confidence 12257899999998 898999999999999999999999999999999999999999888888999999999999999
Q ss_pred CCccccceeecchHHHhhccCChH-------------------HHH----------HHHHHHHHcCCCeeEEEeeeeEEE
Q 003466 693 GGVIPLAATLATNAVFDSFVGDSK-------------------LWD----------LELIQQISSHRTVQRVVALGTLCA 743 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~~-------------------~~~----------~~l~~~l~~~~~v~~vrg~Gl~~~ 743 (818)
+||+|+|+++++++++ .+ .... .+. +.+.+.|++. +..+++.|.++.
T Consensus 285 ~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~g~~~~ 360 (419)
T 2eo5_A 285 GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL--ADDVRGIGLAWG 360 (419)
T ss_dssp TTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSEEEEETTEEE
T ss_pred CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhheEeeeEEEE
Confidence 9988999999999987 65 3111 111 1122334333 567899999999
Q ss_pred EEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 744 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 744 iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+++..+. ..+. +++.|+++||++++.+ +.+|++|++.+|++|+++++++|+++++++
T Consensus 361 i~~~~~~-------~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 361 LEYNEKK-------VRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp EECSCHH-------HHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCc-------cHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9884220 2355 8889999999999975 899999999999999999999999987653
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=357.27 Aligned_cols=340 Identities=21% Similarity=0.264 Sum_probs=272.2
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. ++||.+|+ +|||+.+++++.++||+ ||+|.+|+.++++++.+... .+..+...+++++|++
T Consensus 18 ~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 89 (392)
T 3ruy_A 18 LPIVISKAEGV--WVEDPEGN----RYMDLLSAYSAVNQGHR-HPKIINALIDQANRVTLTSR-AFHSDQLGPWYEKVAK 89 (392)
T ss_dssp CSCEECEEEBT--EEECTTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEETTHHHHHHHHHH
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEEcCCChhhhccCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHH
Confidence 45688888887 69999999 99999999999999999 99999999999998876542 3557889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.++ .++++|++||++|++.|++++++......|. .+++.+||+.+.+|||.+.+++++++...++.
T Consensus 90 ~~g---~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~-----------~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 155 (392)
T 3ruy_A 90 LTN---KEMVLPMNTGAEAVETAIKTARRWAYDVKKV-----------EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKR 155 (392)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC-----------CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTT
T ss_pred hcC---CCEEEEeCcHHHHHHHHHHHHHHhhhhccCC-----------CCCCcEEEEEcCCcCCCCHhhhhccCChhhcc
Confidence 987 4799999999999999999884321222221 12346899999999999999999887654443
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ .|. . + +... ++++|+ +.+++.+.
T Consensus 156 ~~-~~~-------~--~------~~~~----------------~~~~d~------------------~~l~~~l~----- 180 (392)
T 3ruy_A 156 GF-GPM-------L--P------GIIV----------------IPYGDL------------------EALKAAIT----- 180 (392)
T ss_dssp TC-CSC-------C--S------SEEE----------------ECTTCH------------------HHHHHHCC-----
T ss_pred cc-CCC-------C--C------CCee----------------eCcccH------------------HHHHHHhc-----
Confidence 21 010 0 0 0000 113442 56776663
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++|++||+ ++.+|.+.++++|+++|+++|++||++||+||+|+|||++|++++.+.+++.||++|+||+|+||
T Consensus 181 ---~~~~~v~~~~~-~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG 256 (392)
T 3ruy_A 181 ---PNTAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGG 256 (392)
T ss_dssp ---TTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred ---cCeEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEchhhhCC
Confidence 57899999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHHcC--CCeeEEEeeeeE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQISSH--RTVQRVVALGTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~~~--~~v~~vrg~Gl~ 741 (818)
|+|+|++++++++++.+..... .+ .+.+.+.+++. +.+..+++.|.+
T Consensus 257 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 336 (392)
T 3ruy_A 257 VFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLF 336 (392)
T ss_dssp TSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETTE
T ss_pred hhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeeeE
Confidence 8899999999999887753211 00 11233445544 457788999999
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+.+..+ +..+.+.|.++||++.+.+ +.+|+.|++.+|++|+++++++|++++
T Consensus 337 ~~~~~~~~----------~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 337 IGIELNEP----------ARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EEEEESSC----------SHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcch----------HHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99987542 3468889999999999875 899999999999999999999998875
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=349.52 Aligned_cols=346 Identities=25% Similarity=0.295 Sum_probs=273.9
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. ++||.+|+ +|||+.+++|++++||+ ||+|.+|+.++++++.+.. ..+.++...+++++|++
T Consensus 21 ~~~~~~~~~g~--~~~~~~g~----~~lD~~~~~~~~~lg~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 92 (406)
T 4adb_A 21 APFIPVRGEGS--RLWDQQGK----EYIDFAGGIAVNALGHA-HPELREALNEQASKFWHTG-NGYTNEPVLRLAKKLID 92 (406)
T ss_dssp CSSCEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTCSCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCceEEeeccC--EEEeCCCC----EEEECCCchhhcccCCC-CHHHHHHHHHHHHhccccc-CCcCCHHHHHHHHHHHh
Confidence 45578888887 69999999 99999999999999999 9999999999999865543 23567889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+.+ .++++|++||++|++.|++++ +.+....|. +++.+||+.+.+|||.+..++.+++...++.
T Consensus 93 ~~~---~~~v~~~~gg~~a~~~al~~~-~~~~~~~~~------------~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~ 156 (406)
T 4adb_A 93 ATF---ADRVFFCNSGAEANEAALKLA-RKFAHDRYG------------SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQ 156 (406)
T ss_dssp HSS---CSEEEEESSHHHHHHHHHHHH-HHHHHHHTC------------TTCCEEEEETTCCCCSSHHHHHHSSCGGGTG
T ss_pred hCC---CCeEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcCCCcHHHhhccCCccccc
Confidence 987 369999999999999999988 444322222 4456899999999999999888887554332
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ . +.. .+... ++++|+ +.|++.+.
T Consensus 157 ~~-----~-------~~~----~~~~~----------------~~~~d~------------------~~l~~~l~----- 181 (406)
T 4adb_A 157 DF-----A-------PLP----ADIRH----------------AAYNDI------------------NSASALID----- 181 (406)
T ss_dssp GG-----C-------SCC----SSEEE----------------ECTTCH------------------HHHHTTCS-----
T ss_pred cC-----C-------CCC----CCceE----------------eCCCcH------------------HHHHHHhc-----
Confidence 20 0 000 01111 113332 45555442
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++|++||+ ++.||+++++.+++++|.++|++||++||+||+++|||++|..++.+.+++.||++||+|++++|
T Consensus 182 ---~~~~~v~~~p~-np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G 257 (406)
T 4adb_A 182 ---DSTCAVIVEPI-QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG 257 (406)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTT
T ss_pred ---CCeEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEEechhhcCC
Confidence 57899999998 99999999999999999999999999999999999999999999989999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH----------------HH---------------HHHHHHHHH----cCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK----------------LW---------------DLELIQQIS----SHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~----------------~~---------------~~~l~~~l~----~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... .+ .+.+.+.++ .++.+.++++.|
T Consensus 258 -~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g 336 (406)
T 4adb_A 258 -FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLG 336 (406)
T ss_dssp -SCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred -CCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 799999999999987753211 00 011222232 246678899999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.++.+++.... ...+..+++.|+++||++.+.+ +.+|+.|++.+|++|+++++++|+++++++..
T Consensus 337 ~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 337 LLIGCVLNADY------AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp TEEEEEECTTT------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEeCCc------HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999997531 0125678899999999999875 89999999999999999999999999987753
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=345.43 Aligned_cols=378 Identities=24% Similarity=0.312 Sum_probs=280.5
Q ss_pred hhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc
Q 003466 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~ 433 (818)
.+++.+++|++++. ..|.++.+++|. ++||.+|+ +|||+.++.|+.++||. +|+|.+|+.++++++.
T Consensus 8 ~~~~~~~~~~~~~~------~~~~~~~~~~g~--~~~d~~g~----~~id~~~~~~~~~lg~~-~~~v~~a~~~~~~~~~ 74 (426)
T 1sff_A 8 MQRRSQAIPRGVGQ------IHPIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLS 74 (426)
T ss_dssp HHHHHHHSCTTBCC------SEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHTTTCS
T ss_pred HHHHHHhcCccccc------cCCceEEecccC--EEEeCCCC----EEEEcccChhhcccCCC-CHHHHHHHHHHHHhCC
Confidence 34445566766543 247788898887 69999999 99999999999999998 9999999999998866
Q ss_pred cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEc
Q 003466 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (818)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (818)
+.....+.++...+|.++|+++++.+..+.++|+++|++|++.|+++| +.+++ +.+||+.+
T Consensus 75 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a-~~~~~------------------~~~vi~~~ 135 (426)
T 1sff_A 75 HTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAATK------------------RSGTIAFS 135 (426)
T ss_dssp CCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHT------------------CCEEEEET
T ss_pred CccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHH-HHhhC------------------CCeEEEEC
Confidence 533223457788999999999884221268999999999999999987 55543 23799999
Q ss_pred CCCCCCccccccccCCC-CCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 514 GSYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 514 ~sYHG~t~~als~tg~~-~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
.+|||.+..++.+++.. .++.. .++. ..+...+++|.++. +.
T Consensus 136 p~y~~~~~~~~~~~g~~~~~~~~--------~~~~--------~~~v~~v~~~~~~~-----------~~---------- 178 (426)
T 1sff_A 136 GAYHGRTHYTLALTGKVNPYSAG--------MGLM--------PGHVYRALYPCPLH-----------GI---------- 178 (426)
T ss_dssp TCCCCSSHHHHHHSSCCTTTTTT--------SCCC--------CSSEEEECCCBGGG-----------TB----------
T ss_pred CCcCCCchHhhhhcCCccccccc--------cCCC--------CCCcEEeCCCcccc-----------cc----------
Confidence 99999998888877643 12211 0000 01122333332210 00
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
. .....+.|++.+++. .++.++++|++||+ ++++|++.++++++++|+++|++||++||+||+++|||++|.+
T Consensus 179 ~---~~~d~~~l~~~l~~~---~~~~~~~~v~~~p~-~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~ 251 (426)
T 1sff_A 179 S---EDDAIASIHRIFKND---AAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL 251 (426)
T ss_dssp C---HHHHHHHHHHHHHHT---CCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred c---hHHHHHHHHHHHHhc---cCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccch
Confidence 0 001135677777531 12357899999998 7778988999999999999999999999999999999999998
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH-------------------HH------------HHH
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-------------------LW------------DLE 721 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~ 721 (818)
++++.+++.||+++|||++++| +|+|++++++++++.+..... .+ .+.
T Consensus 252 ~~~~~~~~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~ 330 (426)
T 1sff_A 252 FAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQK 330 (426)
T ss_dssp SGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhhhhcCCCCCEEEEcccccCC-CceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888899999999999999999 799999999999887753110 00 011
Q ss_pred HHHHHH----cCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHH
Q 003466 722 LIQQIS----SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVC 794 (818)
Q Consensus 722 l~~~l~----~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edI 794 (818)
+.+.++ .++.+..+++.|.++.+++........+....+..+++.|+++||++.+.+ +.+|+.+++.++++|+
T Consensus 331 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i 410 (426)
T 1sff_A 331 LKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQI 410 (426)
T ss_dssp HHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHH
Confidence 222332 366677788899999999864211111122346678899999999999854 8999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 003466 795 SQLLLKLYQRLEEF 808 (818)
Q Consensus 795 d~~~~~l~~~l~~l 808 (818)
++++++|+++++++
T Consensus 411 ~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 411 RQGLEIISQCFDEA 424 (426)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=326.38 Aligned_cols=340 Identities=20% Similarity=0.282 Sum_probs=261.6
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|.++.+++|. ++||.+|+ +|||+.+++|++++||+ +|+|.+|+.++++++.+... .+..+...+++++|+
T Consensus 21 ~~~~~~~~~~g~--~~~d~~g~----~~ld~~~~~~~~~lg~~-~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~la 92 (397)
T 2ord_A 21 RFPATFVYGKGS--WIYDEKGN----AYLDFTSGIAVNVLGHS-HPRLVEAIKDQAEKLIHCSN-LFWNRPQMELAELLS 92 (397)
T ss_dssp CCSCEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCSCCCT-TSEEHHHHHHHHHHH
T ss_pred CCCceEEeeecC--EEEECCCC----EEEECCccccccccCCC-CHHHHHHHHHHHHhcccCcc-ccCCHHHHHHHHHHH
Confidence 467788898887 69999999 99999999999999998 99999999999988765321 234678899999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
++++ .++++|++||++|++.|++.+ +.+... |. +++.+||+++.+|||.+..++..++...++
T Consensus 93 ~~~g---~~~v~~~~gg~~a~~~al~~~-~~~~~~-~~------------~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~ 155 (397)
T 2ord_A 93 KNTF---GGKVFFANTGTEANEAAIKIA-RKYGKK-KS------------EKKYRILSAHNSFHGRTLGSLTATGQPKYQ 155 (397)
T ss_dssp HTTT---SCEEEEESSHHHHHHHHHHHH-HHHHHH-HC------------TTCCEEEEEBTCCCCSSHHHHHHSBCHHHH
T ss_pred HhcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhc-CC------------CCCceEEEEcCCcCCCchhhhhccCChhhc
Confidence 9987 379999999999999999987 433211 10 223579999999999998777776543222
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
..+ .|. + .+...+ +++|+ +.+++.+.
T Consensus 156 ~~~-~p~-------~--------~~~~~~----------------~~~d~------------------~~l~~~l~---- 181 (397)
T 2ord_A 156 KPF-EPL-------V--------PGFEYF----------------EFNNV------------------EDLRRKMS---- 181 (397)
T ss_dssp GGG-CSC-------C--------TTEEEE----------------CTTCH------------------HHHHHHCC----
T ss_pred ccc-CCC-------C--------CCeeEe----------------cCCCH------------------HHHHHHhh----
Confidence 110 000 0 011111 12332 55666663
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++|++||+ ++.+|.+.++.+++++|.++|++||++||+||+++||+++|+.+..+.+++.||+++++|++++
T Consensus 182 ----~~~~~v~~~~~-~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~ 256 (397)
T 2ord_A 182 ----EDVCAVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGG 256 (397)
T ss_dssp ----TTEEEEEECSE-ECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGT
T ss_pred ----cCeEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeeccccCC
Confidence 37899999996 9999997789999999999999999999999999999999988777888989999999999999
Q ss_pred CccccceeecchHHHhhccCChH----------------H---------------HHHHHHHHHH----cCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK----------------L---------------WDLELIQQIS----SHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~----------------~---------------~~~~l~~~l~----~~~~v~~vrg~ 738 (818)
| +|+|+++++++++ .+..... . ..+.+.+.++ .++.+..+++.
T Consensus 257 G-~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 334 (397)
T 2ord_A 257 G-VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGM 334 (397)
T ss_dssp T-SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred C-cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEE
Confidence 9 5999999998877 6542110 0 0011223332 35666678889
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
|.++.+++... ..+..+++.|+++||++.+. .+.+|++|++.++++|+++++++|++++++
T Consensus 335 g~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 335 GLMIGIQFREE--------VSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp TTEEEEEECTT--------SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCh--------HHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 99999988643 12556888999999999987 489999999999999999999999988753
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=309.00 Aligned_cols=333 Identities=21% Similarity=0.275 Sum_probs=257.1
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++.++.|. ++||.+|+ +|||+.++.|++++||. +|+|.+|+.++++++.+.. ..+..+...+++++|++
T Consensus 27 ~~~~~~~~~g~--~~~d~~g~----~~ld~~~~~~~~~~g~~-~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 98 (395)
T 1vef_A 27 HDLLIVRGQGA--RVWDAEGN----EYIDCVGGYGVANLGHG-NPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTA 98 (395)
T ss_dssp CSSCEEEEEBT--EEEETTSC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCccEEecccC--EEEeCCCC----EEEEccCccccccCCCC-CHHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHHHH
Confidence 45678888886 79999999 99999999999999998 9999999999998865432 12357889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+++.+ .+.++|++||++|++.|++.+ +.++. +.+||+.+.+|||.+..++.++|....+.
T Consensus 99 ~~~~~-~~~v~~~~gg~~a~~~al~~~-~~~~~------------------~~~vi~~~~~y~~~~~~~~~~~g~~~~~~ 158 (395)
T 1vef_A 99 ILPPE-LNRVFPVNSGTEANEAALKFA-RAHTG------------------RKKFVAAMRGFSGRTMGSLSVTWEPKYRE 158 (395)
T ss_dssp TSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHS------------------CCEEEEETTCCCCSSHHHHHTCCCHHHHG
T ss_pred hcCCC-cCEEEEcCcHHHHHHHHHHHH-HHHhC------------------CCeEEEEcCCcCCCchhhhhhcCCccccc
Confidence 98532 478999999999999999987 43332 24799999999999877776665431111
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ .|. . .+... ++++| .+.+++.+.
T Consensus 159 ~~-~p~-------~--------~~~~~----------------~~~~d------------------~~~l~~~i~----- 183 (395)
T 1vef_A 159 PF-LPL-------V--------EPVEF----------------IPYND------------------VEALKRAVD----- 183 (395)
T ss_dssp GG-CSC-------S--------SCEEE----------------ECTTC------------------HHHHHHHCC-----
T ss_pred cc-CCC-------C--------CCeeE----------------eCCCc------------------HHHHHHHhc-----
Confidence 00 000 0 00000 01223 256666663
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++|+++|+ ++..|.+.++++++++|.++|++||++||+||+++|||++|+.+..+.+++.||+++++|.+++|
T Consensus 184 ---~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~g 259 (395)
T 1vef_A 184 ---EETAAVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG 259 (395)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT
T ss_pred ---cCEEEEEEeCc-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEcccccCC
Confidence 36899999998 88889998899999999999999999999999999999999888778889999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHHcCC--CeeEEEeeeeE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQISSHR--TVQRVVALGTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~~~~--~v~~vrg~Gl~ 741 (818)
+++|++++++++++.+..... .+ .+.+.+.+++.+ .+..+++.|.+
T Consensus 260 -~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~ 338 (395)
T 1vef_A 260 -VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLM 338 (395)
T ss_dssp -SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTE
T ss_pred -CceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEE
Confidence 799999999999887754110 00 112334455443 34567788989
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+++..+ +..+++.|. ++||++.+.+ +.+|+.+++.+|++|+++++++|.+++
T Consensus 339 ~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 339 VGLELKEK----------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEESSC----------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCh----------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 98888532 346788898 9999999864 899999999999999999999998875
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=295.36 Aligned_cols=192 Identities=22% Similarity=0.220 Sum_probs=163.4
Q ss_pred CCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCC-CCCchHHHHHhccCCccccCCCcccccc
Q 003466 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP-HDSDSRFLFTKLPSLSLRRNFPSSLILS 113 (818)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (818)
..|+.|||+||+||+|||+||++|+++|. ++|++|+|||||++|+. .+.|..++.+.+ ++
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~-----~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~-g~------------- 84 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAAR-----QAGIDVAVCKPVQTGTARGDDDLAEVGRLA-GV------------- 84 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEEEEEECCGGGTCCHHHHHHHHH-CC-------------
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEeeeecCCCCCCHHHHHHHHHc-CC-------------
Confidence 34789999999999999999999999994 89999999999999873 457777776553 22
Q ss_pred cchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCC-CC
Q 003466 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG-VV 192 (818)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~-~~ 192 (818)
. ...|+|.|+.|++|+++++.+ ++ .+
T Consensus 85 ---------------------------~-------------------------~~~~~~~~~~p~sP~~aa~~~-~~~~~ 111 (251)
T 3fgn_A 85 ---------------------------T-------------------------QLAGLARYPQPMAPAAAAEHA-GMALP 111 (251)
T ss_dssp ---------------------------C-------------------------EEEEEEECSSSSCHHHHHHHT-TCCCC
T ss_pred ---------------------------C-------------------------CCCCCeeECCCCChHHHHHHc-CCCCC
Confidence 0 115689999999999999998 77 78
Q ss_pred ChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCC-CchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003466 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG-SLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (818)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~-~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (818)
..++|.+.|+++.++ +|++||||+||+++|+..+ .+++|+|+.+++|||||++.++|+++++++++
T Consensus 112 ~~~~i~~~~~~l~~~-------------~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~ 178 (251)
T 3fgn_A 112 ARDQIVRLIADLDRP-------------GRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTL 178 (251)
T ss_dssp CHHHHHHHHHTTCCT-------------TCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-------------CCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHH
Confidence 899999998886544 9999999999999997665 89999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEccCCC-C------CHHHHHHhhcCCCCEEe-cCCCCC
Q 003466 272 ESLKLRGYDVVAVVFEDHGL-V------NEVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~~-~------~~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
++++.++++|.|||+|++.. . +.+.|+++ +|||| ||+.+.
T Consensus 179 ~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~----vpvLG~iP~~~~ 226 (251)
T 3fgn_A 179 EALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI----AMVRAALPAGAA 226 (251)
T ss_dssp HHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH----SCEEEEEETTGG
T ss_pred HHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh----CCEEEEeeCCCC
Confidence 99999999999999999832 2 23334433 99999 999764
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=292.81 Aligned_cols=336 Identities=20% Similarity=0.256 Sum_probs=256.1
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|.++.+++|. ++||.+|+ .|||+.++.+++.+||. +|++.+|+.++++++++.. ..+..+...+|.++|+
T Consensus 9 ~~~~~~~~~~g~--~~~~~~g~----~~ld~~~~~~~~~~g~~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la 80 (375)
T 2eh6_A 9 RLPVKFVRGKGV--YLYDEEGK----EYLDFVSGIGVNSLGHA-YPKLTEALKEQVEKLLHVS-NLYENPWQEELAHKLV 80 (375)
T ss_dssp CEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBS-CHHHHHHHHHHHHHCSCCC-TTBCCHHHHHHHHHHH
T ss_pred CCCccEEeeecC--EEEeCCCC----EEEEcCCcccccccCCC-CHHHHHHHHHHHHhccccC-cccCCHHHHHHHHHHH
Confidence 457788898887 69999999 99999999988899999 9999999999998764422 1234567889999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
++++.+ +.++++++|++|++.|++++ +.++.+ |. +++.+||+.+.+||+....++.+++...++
T Consensus 81 ~~~g~~--~~v~~~~g~t~a~~~~~~~~-~~~~~~-~~------------~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~ 144 (375)
T 2eh6_A 81 KHFWTE--GKVFFANSGTESVEAAIKLA-RKYWRD-KG------------KNKWKFISFENSFHGRTYGSLSATGQPKFH 144 (375)
T ss_dssp HTSSSC--EEEEEESSHHHHHHHHHHHH-HHHHHH-TT------------CCCCEEEEEBTCCCCSSHHHHHHCBCGGGT
T ss_pred hhcCCC--CeEEEeCchHHHHHHHHHHH-HHHhcc-CC------------CCCCEEEEECCCcCCCchhhhhhcCCcccc
Confidence 998731 78999999999999999986 544310 11 334589999999999988777766543221
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
..+ .|. . ++...+ +++|+ +.+++.+.
T Consensus 145 ~~~-~~~--------~-------~~~~~~----------------~~~d~------------------~~l~~~l~---- 170 (375)
T 2eh6_A 145 KGF-EPL--------V-------PGFSYA----------------KLNDI------------------DSVYKLLD---- 170 (375)
T ss_dssp TTT-CSC--------C-------SSEEEE----------------CTTCH------------------HHHHTTCC----
T ss_pred CCC-CCC--------C-------CCceeC----------------CCchH------------------HHHHHHhc----
Confidence 110 000 0 000011 12221 45555442
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++|+++|+ ++..|.+.++.+++++|.++|++||+++|+||+++|||++|..+..+.+|+.||++++||.+++
T Consensus 171 ----~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~SK~~~~ 245 (375)
T 2eh6_A 171 ----EETAGIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGG 245 (375)
T ss_dssp ----TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ----CCeEEEEEeCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEcccccC
Confidence 36899999997 9999999889999999999999999999999999999999987777888889999999999999
Q ss_pred CccccceeecchHHHhhccCC--hH-----------------HH----------HHHHHHHHHcCCCeeEEEeeeeEEEE
Q 003466 694 GVIPLAATLATNAVFDSFVGD--SK-----------------LW----------DLELIQQISSHRTVQRVVALGTLCAI 744 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~--~~-----------------~~----------~~~l~~~l~~~~~v~~vrg~Gl~~~i 744 (818)
| +++|++++++++++.+... .. .+ .+.+.+.+++.+. ..+++.|.++.+
T Consensus 246 g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~ 323 (375)
T 2eh6_A 246 G-VPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGNYFKEKLKELGK-GKVKGRGLMLGL 323 (375)
T ss_dssp T-SCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SEEEEETTEEEE
T ss_pred C-CCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEEEEE
Confidence 9 7999999999998877541 10 00 0123344555543 456788999888
Q ss_pred EEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
++..+ +..+++.|+++||++.+. .+.+|+.++..++++|+++++++|+++
T Consensus 324 ~~~~~----------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 324 ELERE----------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp ECSSC----------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEcCc----------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 87532 345788899999999986 489999999999999999999999875
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=291.72 Aligned_cols=201 Identities=21% Similarity=0.265 Sum_probs=162.7
Q ss_pred CCCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCC----CCchHHHHHhccCCccccCCCc
Q 003466 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH----DSDSRFLFTKLPSLSLRRNFPS 108 (818)
Q Consensus 33 ~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~----~~d~~~~~~~~~~~~~~~~~~~ 108 (818)
|..|++.|||+||+||+|||+||++|+++|. ++|++|+|||||++|+.. +.|..++.+....+
T Consensus 17 ~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~-----~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~-------- 83 (242)
T 3qxc_A 17 LYFQGHMLFISATNTNAGKTTCARLLAQYCN-----ACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLL-------- 83 (242)
T ss_dssp --CCCEEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTT--------
T ss_pred HhhcCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHH--------
Confidence 5577899999999999999999999999994 899999999999998863 56666652211000
Q ss_pred ccccccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhc
Q 003466 109 SLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERES 188 (818)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~ 188 (818)
...+++ ..+++|.|++|++|+++++.+
T Consensus 84 ---------------------~~g~~~-------------------------------~~~~p~~~~~p~sp~~aa~~~- 110 (242)
T 3qxc_A 84 ---------------------DRSLTL-------------------------------KDISFYRYHKVSAPLIAQQEE- 110 (242)
T ss_dssp ---------------------CTTCCH-------------------------------HHHCCEECSSSSCHHHHHHHH-
T ss_pred ---------------------hCCCCh-------------------------------HHeeeEEECCCCChHHHHHHc-
Confidence 000111 226799999999999999998
Q ss_pred CC--CCChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHH
Q 003466 189 GG--VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISG 266 (818)
Q Consensus 189 ~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~ 266 (818)
+. .+..++|.+.|+++.++ +|++||||+||+++|+..+.+++|+|+.+++|||||++.++|+++|
T Consensus 111 g~~~~i~~~~I~~~~~~l~~~-------------~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~ 177 (242)
T 3qxc_A 111 DPNAPIDTDNLTQRLHNFTKT-------------YDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLIND 177 (242)
T ss_dssp CTTCCCCHHHHHHHHHHGGGT-------------CSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhc-------------CCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHH
Confidence 77 78999999999987765 9999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEccCCCC------CHHHHHHhhcC-CCCEEe-cCCC
Q 003466 267 TISAYESLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRN-RVPVLV-LPPL 313 (818)
Q Consensus 267 ~~~~~~~l~~~~~~v~gvi~N~~~~~------~~~~l~~~~~~-~~pvlg-iP~~ 313 (818)
+++++++++.+|++ .|||+|++..+ ...+|+++..+ ..|++. .|.+
T Consensus 178 ~~lt~~~l~~~g~~-~GvIlN~v~~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~ 231 (242)
T 3qxc_A 178 CLLNDFLLKSHQLD-YKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSL 231 (242)
T ss_dssp HHHHHHHHHTSSSC-EEEEECCCTTCCHHHHHTHHHHHHHHHHCSSCCEEGGGCH
T ss_pred HHHHHHHHHhCCCC-EEEEEeCCCCccchhhhhHHHHHHhcCcccCCceeccccH
Confidence 99999999999999 99999999443 24445555422 456655 4443
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=291.67 Aligned_cols=206 Identities=19% Similarity=0.244 Sum_probs=167.3
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCcccccccc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (818)
.|++|||+||+||+|||+||++|+++|. ++|++|+|||||++|+....+.. .
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~-----~~G~~V~~~KPv~~g~~~~~~~~-~---------------------- 54 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCE-----HQNIKSLCLKPVASGQSQFSELC-E---------------------- 54 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESBCSSSSSB-H----------------------
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEecceeecCccCCCCC-C----------------------
Confidence 4789999999999999999999999994 89999999999999875432210 0
Q ss_pred hhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChh
Q 003466 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (818)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (818)
.+|+.. .+++.+.++ ...|+|.|+.|++||++++.+ +..+..+
T Consensus 55 ---~~D~~~--~~~~~~~~~-------------------------------~~~~~~~~~~p~sp~~aa~~~-~~~i~~~ 97 (228)
T 3of5_A 55 ---DVESIL--NAYKHKFTA-------------------------------AEINLISFNQAVAPHIIAAKT-KVDISIE 97 (228)
T ss_dssp ---HHHHHH--HHTTTSSCH-------------------------------HHHCSEEESSSSCHHHHHHHT-TCCCCHH
T ss_pred ---hHHHHH--HhcCCCCCh-------------------------------hhEEEEEECCCCCHHHHHHHc-CCCCCHH
Confidence 011111 111111111 226799999999999999998 8888999
Q ss_pred HHHHHHHH-HHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 196 KVIETLGK-CLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 196 ~i~~~~~~-~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+|.+.+++ +.++ +|++||||+||+++|+..+.+++|+|+.+++|||||++.++|++++++.+++.+
T Consensus 98 ~i~~~~~~~l~~~-------------~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l 164 (228)
T 3of5_A 98 NLKQFIEDKYNQD-------------LDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINEL 164 (228)
T ss_dssp HHHHHHHGGGGSS-------------CSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-------------CCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHH
Confidence 99999987 6544 999999999999999988899999999999999999999999999999999999
Q ss_pred HhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCCEEe-cCCCCCCCcchhhhhhh
Q 003466 275 KLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWFD 326 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~~~~~~~~l~ 326 (818)
+.++++|.|||+|++..+ +.+.|++++ ++||+| || ...++..|++
T Consensus 165 ~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~--g~pvLG~iP-----~~~~~~~~~~ 216 (228)
T 3of5_A 165 NRHNIKLAGWIANCNDSNIKYIDEQINTIEELS--GYKCSAKIS-----RNADYLDFID 216 (228)
T ss_dssp HHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHH--SCCCSEEEE-----SSCCHHHHHH
T ss_pred HhCCCcEEEEEEECcCCcchhhHHHHHHHHHhh--CCCEEEECC-----CchHhhhhcC
Confidence 999999999999998332 355666677 999999 99 2345566664
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=267.19 Aligned_cols=313 Identities=11% Similarity=0.057 Sum_probs=229.4
Q ss_pred EEE-eecCCeeEEEeCCcCccccceeecccccccccCC-CCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHH
Q 003466 378 VID-SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (818)
Q Consensus 378 vi~-~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lG-h~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~ 451 (818)
++. +++|. +++| ||+ +||||.++ .++| |. ||+|.+|+.+++++++... ...+.++...+|+++
T Consensus 49 ~~~~~~~g~--~~~~-~g~----~~id~~~~---~~lg~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 117 (427)
T 2w8t_A 49 VMEQVKSPT--EAVI-RGK----DTILLGTY---NYMGMTF-DPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQA 117 (427)
T ss_dssp CCSEEEETT--EEEE-TTE----EEEECSCC---CTTCGGG-CHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHH
T ss_pred eccccCCCc--eEee-CCc----eEEEEECc---ccccCCC-CHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHH
Confidence 345 67776 6999 999 99999996 4689 67 9999999999998865321 122346888999999
Q ss_pred HHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 452 L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
|+++++ .+.+++++||++||+.|++.+ + ++.+.|.++..+|+++..++...|...
T Consensus 118 la~~~g---~~~~i~~~sGs~a~~~al~~l----~------------------~~gd~vl~~~~~h~~~~~~~~~~g~~~ 172 (427)
T 2w8t_A 118 LRDFYG---TTGAIVFSTGYMANLGIISTL----A------------------GKGEYVILDADSHASIYDGCQQGNAEI 172 (427)
T ss_dssp HHHHHT---CSEEEEESCHHHHHHHHHHHH----S------------------CTTCEEEEETTCCHHHHHHHHHSCSEE
T ss_pred HHHHhC---CCceEEecCcHHHHHHHHHHh----c------------------CCCCEEEECCcccHHHHHHHHHcCCee
Confidence 999997 468899999999999998875 1 123566778889998877666554221
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
+.+| ++|+ +.|++.|++.
T Consensus 173 ------------------------------~~~~--------------~~d~------------------~~le~~l~~~ 190 (427)
T 2w8t_A 173 ------------------------------VRFR--------------HNSV------------------EDLDKRLGRL 190 (427)
T ss_dssp ------------------------------EEEC--------------TTCH------------------HHHHHHHHTS
T ss_pred ------------------------------EEeC--------------CCCH------------------HHHHHHHHhc
Confidence 1111 3442 5677777631
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC--cccCCccchhcccCCCCc----EE
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVPD----IA 685 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG--fGRtG~~~a~e~~gv~PD----iv 685 (818)
..+++++|++||+ ++..|.+.+ +++|+++|++||++||+||++++ +|++|.. ..+++++.|| +.
T Consensus 191 ----~~~~~~~v~~~~~-~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~di~~~ 260 (427)
T 2w8t_A 191 ----PKEPAKLVVLEGV-YSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQIDFVVG 260 (427)
T ss_dssp ----CSSSCEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCSEEEE
T ss_pred ----cCCCCeEEEEcCC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCcEEEe
Confidence 1137899999998 899998886 99999999999999999999986 3455554 4566888877 77
Q ss_pred EecccccCCccccceeecchHHHhhccCChH---------------------HH-------------HHHHHHHHHcCCC
Q 003466 686 CYGKLLTGGVIPLAATLATNAVFDSFVGDSK---------------------LW-------------DLELIQQISSHRT 731 (818)
Q Consensus 686 tlgKgLggGy~PlsAvl~~~~i~~~l~~~~~---------------------~~-------------~~~l~~~l~~~~~ 731 (818)
+++|++| +|.|++++++++++.+..... .+ .+.+.+.+++.+.
T Consensus 261 s~sK~~g---~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 337 (427)
T 2w8t_A 261 TFSKSVG---TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGF 337 (427)
T ss_dssp ESSSTTC---SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchhhhc---cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999996 467889999998887654311 00 0122333443332
Q ss_pred eeEEEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC--------CEEEEECCCCChHHHHHHHHHHHH
Q 003466 732 VQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 732 v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--------~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
...... .|.++.+.+... ..+..+++.|+++||++.+.. +.+|+.++..+|++||++++++|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~ 409 (427)
T 2w8t_A 338 RLGTETCDSAIVAVMLEDQ--------EQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQ 409 (427)
T ss_dssp EESCSSCCSSEEEEEESSH--------HHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 110023 677888877532 346788999999999998742 589999999999999999999999
Q ss_pred HHHHHHH
Q 003466 803 QRLEEFD 809 (818)
Q Consensus 803 ~~l~~l~ 809 (818)
++++++.
T Consensus 410 ~~l~~~~ 416 (427)
T 2w8t_A 410 AAGRAVG 416 (427)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9987764
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-27 Score=260.63 Aligned_cols=301 Identities=11% Similarity=0.005 Sum_probs=223.3
Q ss_pred eEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCC
Q 003466 387 FSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWAS 462 (818)
Q Consensus 387 ~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~ 462 (818)
++++|.+|+ +||||+| ++++|+..||+|++|+.+++++++... ...+..+...+++++|+++++. +
T Consensus 51 ~~~~~~~g~----~~ld~~s---~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~---~ 120 (409)
T 3kki_A 51 LVLGKQASP----DDIILQS---NDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF---D 120 (409)
T ss_dssp TTCCCCCCT----TSEECCC---SCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC---S
T ss_pred eeeCCCCCC----ceEEeec---cCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC---C
Confidence 457788999 9999988 567888559999999999999865321 1123456778899999999873 5
Q ss_pred cEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCccc
Q 003466 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (818)
Q Consensus 463 ~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~ 542 (818)
.+++++||++|++.|++.. .++.+.|.++..+|+.+..++...|....
T Consensus 121 ~~i~~~sGt~a~~~~l~~~----------------------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~---------- 168 (409)
T 3kki_A 121 ECLLSQSGWNANVGLLQTI----------------------CQPNTNVYIDFFAHMSLWEGARYANAQAH---------- 168 (409)
T ss_dssp EEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTSCHHHHHHHHHTTCEEE----------
T ss_pred eEEEecchHHHHHHHHHHh----------------------cCCCCEEEECCCcCHHHHHHHHHcCCeEE----------
Confidence 7888899999999999966 12235677788889888777666543210
Q ss_pred CCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 003466 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (818)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA 622 (818)
.+| ++| .+.+++.+.+ .+.++
T Consensus 169 --------------------~~~--------------~~d------------------~~~le~~l~~-------~~~~~ 189 (409)
T 3kki_A 169 --------------------PFM--------------HNN------------------CDHLRMLIQR-------HGPGI 189 (409)
T ss_dssp --------------------EEC--------------TTC------------------HHHHHHHHHH-------HCSCE
T ss_pred --------------------Eec--------------CCC------------------HHHHHHHHHh-------cCCeE
Confidence 001 222 2567777763 12489
Q ss_pred EEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC--cccCCccchhcccCC--CCcE--EEecccccCCcc
Q 003466 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGC--VPDI--ACYGKLLTGGVI 696 (818)
Q Consensus 623 VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG--fGRtG~~~a~e~~gv--~PDi--vtlgKgLggGy~ 696 (818)
|+++++ ++..|.+.+ +++|+++|++||++||+||++++ +|++|..+. +.+++ .+|+ .+++|++++|
T Consensus 190 vi~~~~-~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~sK~~~~~-- 261 (409)
T 3kki_A 190 IVVDSI-YSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKTFAYR-- 261 (409)
T ss_dssp EEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEESSSTTCSS--
T ss_pred EEECCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeecchhhCCC--
Confidence 999998 898998876 99999999999999999999998 899988766 56677 5777 6899999876
Q ss_pred ccceeecchHHHhhccCChH---------------------HH-------------HHHHHHHHHcCCCeeEEEeeeeEE
Q 003466 697 PLAATLATNAVFDSFVGDSK---------------------LW-------------DLELIQQISSHRTVQRVVALGTLC 742 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~~---------------------~~-------------~~~l~~~l~~~~~v~~vrg~Gl~~ 742 (818)
.|++++++++++.+..... .+ .+.+.+.+++.+. .+.+.|.++
T Consensus 262 -gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~~~~~ 338 (409)
T 3kki_A 262 -AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGL--TIRSESQII 338 (409)
T ss_dssp -CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTTC--CCCCSSSEE
T ss_pred -ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC--ccCCCCCEE
Confidence 4788899888776533110 00 0123344454432 233678888
Q ss_pred EEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 743 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 743 ~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+.+... ..+..+++.|+++||++.+. .+.+|+.++..+|++||++++++|+++++.
T Consensus 339 ~~~~~~~--------~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 339 GLETGDE--------RNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp EEEEESH--------HHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCH--------HHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 8888643 34667899999999999652 268999999999999999999999998865
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-27 Score=263.36 Aligned_cols=320 Identities=11% Similarity=0.055 Sum_probs=222.2
Q ss_pred cCCeeEEEeCC--cCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-
Q 003466 383 CGENFSVYQDQ--KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG- 459 (818)
Q Consensus 383 ~G~~~~v~D~d--G~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~- 459 (818)
+|.++++||.+ |+ +|||+..+ .+..+. +|+|++|+.+++++..+. +.....+...++++++.+..+.+
T Consensus 47 ~g~g~~~~d~~~~g~----~~i~~~~~---~~~~~~-~~~v~~a~~~~~~~~~~~-y~~~~~~l~~~l~~~l~~~~g~~~ 117 (421)
T 3l8a_A 47 LNQFTYKWKTSENNP----ELLQMWVA---DMDFLP-VPEIKEAIINYGREHIFG-YNYFNDDLYQAVIDWERKEHDYAV 117 (421)
T ss_dssp TTTTBTTTGGGTTCT----TCEECCSS---CCCSCC-CHHHHHHHHHHHHHCCSS-CBCCCHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCccccccCCCC----CeeecccC---CCCCCC-CHHHHHHHHHHHhcCCcC-CCCCCHHHHHHHHHHHHHHhCCCC
Confidence 34445799999 78 99999664 344457 999999999999863322 11223567778888888766511
Q ss_pred CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCC
Q 003466 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (818)
Q Consensus 460 ~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p 539 (818)
..+.++|+++|+||++.|++.+. ..| .+||+...+||+....+... |...
T Consensus 118 ~~~~v~~~~g~~ea~~~a~~~~~-----~~g----------------d~Vi~~~~~y~~~~~~~~~~-g~~~-------- 167 (421)
T 3l8a_A 118 VKEDILFIDGVVPAISIALQAFS-----EKG----------------DAVLINSPVYYPFARTIRLN-DHRL-------- 167 (421)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHS-----CTE----------------EEEEEEESCCHHHHHHHHHT-TEEE--------
T ss_pred CHHHEEEcCCHHHHHHHHHHHhc-----CCC----------------CEEEECCCCcHHHHHHHHHC-CCEE--------
Confidence 13689999999999999999871 122 47999999999965433322 2110
Q ss_pred cccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 003466 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (818)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~ 619 (818)
..+++. +.. ++. ..| .+.|++.+.+ .+
T Consensus 168 --------------------~~~~~~--~~~-----~~~-~~d------------------~~~le~~i~~-------~~ 194 (421)
T 3l8a_A 168 --------------------VENSLQ--IIN-----GRF-EID------------------FEQLEKDIID-------NN 194 (421)
T ss_dssp --------------------EEEECE--EET-----TEE-ECC------------------HHHHHHHHHH-------TT
T ss_pred --------------------Eecccc--ccC-----CCe-eeC------------------HHHHHHHhhc-------cC
Confidence 001110 000 000 011 2567777752 46
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch----h--cccCCCCcEEEeccccc-
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT----A--DLLGCVPDIACYGKLLT- 692 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a----~--e~~gv~PDivtlgKgLg- 692 (818)
+++|+++++ ++.+| .+++++++++|+++|++||++||+||||++|+++|..+. . +.+++.+++.+++|++|
T Consensus 195 ~~~vil~~p-~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 272 (421)
T 3l8a_A 195 VKIYLLCSP-HNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNI 272 (421)
T ss_dssp EEEEEEESS-BTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTC
T ss_pred CeEEEECCC-CCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccC
Confidence 889999997 99999 455888999999999999999999999999999986321 1 23466678899999998
Q ss_pred CCccccceeecc-hHHHhhccCChH-----------------HH-----------------HHHHHHHHHcCCCeeEEEe
Q 003466 693 GGVIPLAATLAT-NAVFDSFVGDSK-----------------LW-----------------DLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 693 gGy~PlsAvl~~-~~i~~~l~~~~~-----------------~~-----------------~~~l~~~l~~~~~v~~vrg 737 (818)
+| +|+|+++++ +++++.+..... .+ .+.+.+.+++++.+..+++
T Consensus 273 ~G-~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~ 351 (421)
T 3l8a_A 273 AG-TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEP 351 (421)
T ss_dssp GG-GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECC
T ss_pred ch-hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCC
Confidence 78 799999998 888775532110 00 1123344555577777888
Q ss_pred eeeEEE-EEEecCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCA-IELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 738 ~Gl~~~-iel~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.|.++. +++.... ..+..+.+.|++ +||++.++ .+.+|+.++ +++++|++++++|.++++
T Consensus 352 ~~~~~~~v~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 352 EGTYLVWLDFSAYA-------IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp SBSSEEEEECGGGT-------CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEeccccC-------CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 888887 7775421 013457788875 59999872 388999988 589999999999998864
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=249.57 Aligned_cols=314 Identities=14% Similarity=0.130 Sum_probs=227.2
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCC-CCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHH
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lG-h~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (818)
++++++|. +++| +|+ +|||+.++ +++| |. +|++.+|+.++++++++.. +..+..+...++.++|
T Consensus 29 ~~~~~~g~--~v~~-~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 97 (399)
T 3tqx_A 29 IITSPQNA--EIKV-GEK----EVLNFCAN---NYLGLAD-HPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDI 97 (399)
T ss_dssp CBCSCSSS--EEEE-TTE----EEEECSSC---CTTSCTT-CHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHH
T ss_pred cccCCCCc--eEee-CCe----eEEEeecc---CcccccC-CHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHH
Confidence 45567776 6898 999 99999996 6789 68 9999999999998865432 1123467789999999
Q ss_pred HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCC
Q 003466 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (818)
Q Consensus 453 ~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~ 532 (818)
+++++. +..++++||++|++.+++.. .++.+.|.+...+|+.+..++...|...
T Consensus 98 a~~~~~---~~~i~~~sGt~a~~~~l~~~----------------------~~~gd~v~~~~~~~~~~~~~~~~~g~~~- 151 (399)
T 3tqx_A 98 SEFLGT---DDTILYSSCFDANGGLFETL----------------------LGPEDAIISDELNHASIIDGIRLCKAQR- 151 (399)
T ss_dssp HHHHTC---SEEEEESCHHHHHHTTHHHH----------------------CCTTCEEEEETTCCHHHHHHHHSCCSEE-
T ss_pred HHHHCC---CcEEEECchHHHHHHHHHHh----------------------cCCCCEEEECCcccHHHHHHHHHcCCce-
Confidence 999873 57888889999999999865 1123567777888887766665554321
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
+.+| ++|+ +.+++.+++..
T Consensus 152 -----------------------------~~~~--------------~~d~------------------~~l~~~l~~~~ 170 (399)
T 3tqx_A 152 -----------------------------YRYK--------------NNAM------------------GDLEAKLKEAD 170 (399)
T ss_dssp -----------------------------EEEC--------------TTCT------------------THHHHHHHHHH
T ss_pred -----------------------------eEeC--------------CCCH------------------HHHHHHHHhhh
Confidence 0111 2222 23444454210
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecc-cCc-ccCCccchhcccCC--CCcEE--E
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGC--VPDIA--C 686 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~-TGf-GRtG~~~a~e~~gv--~PDiv--t 686 (818)
..+.++++|+++++ ++..|.+.+ +++|.++|++||+++|+||++ .|| ++.|+. ..+.+++ .||++ +
T Consensus 171 --~~~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~di~~~s 242 (399)
T 3tqx_A 171 --EKGARFKLIATDGV-FSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG-TPEYCGVADRVDILTGT 242 (399)
T ss_dssp --TTTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHHTCTTCCSEEEEE
T ss_pred --ccCCCceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHHhhCCCCCCcEEEec
Confidence 11237899999997 899998886 999999999999999999999 464 666654 5567787 88998 8
Q ss_pred ecccccCCccccceeecchHHHhhccCChH---------------------HH-H-------------HHHHHHHHcCCC
Q 003466 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSK---------------------LW-D-------------LELIQQISSHRT 731 (818)
Q Consensus 687 lgKgLggGy~PlsAvl~~~~i~~~l~~~~~---------------------~~-~-------------~~l~~~l~~~~~ 731 (818)
++|.++ | +|.|.+++++++++.+..... .. . +.+.+.+++.+
T Consensus 243 ~sK~~~-g-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 319 (399)
T 3tqx_A 243 LGKALG-G-ASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLG- 319 (399)
T ss_dssp SSSSSC-S-SCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred chHhcc-c-CceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-
Confidence 999999 5 588889999998876543110 11 0 11223333332
Q ss_pred eeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHH
Q 003466 732 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 732 v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+.-+...|.++.+.+... ..+..+++.|.++||++.+. + +.+|+.++..+|++|+++++++|.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 391 (399)
T 3tqx_A 320 FQLVPGNHPIIPVMLGDA--------QLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQ 391 (399)
T ss_dssp CCBCCCSSSEEEEEEECH--------HHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCcCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHH
Confidence 222356788888877543 34678899999999999852 2 5899999999999999999999999
Q ss_pred HHHHH
Q 003466 804 RLEEF 808 (818)
Q Consensus 804 ~l~~l 808 (818)
+++++
T Consensus 392 ~~~~~ 396 (399)
T 3tqx_A 392 VGKKL 396 (399)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98765
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=245.15 Aligned_cols=315 Identities=14% Similarity=0.114 Sum_probs=222.8
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCC-CCCHHHHHHHHHhhhhcccccCC----CCCChhHHHHHHHH
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELL 452 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh-~~hp~V~eAi~~q~~~~~~~~~~----~~~~~~~~eLae~L 452 (818)
++++++|. +++|.+|+ +|||+.++ +++|| . +|++.+|+.+++++++..... .+..+...+|.++|
T Consensus 30 ~~~~~~g~--~~~~~~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 99 (401)
T 1fc4_A 30 IITSAQQA--DITVADGS----HVINFCAN---NYLGLAN-HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKL 99 (401)
T ss_dssp CBCSCSSS--EEEBTTSC----EEEECCCS---CTTSCTT-CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHH
T ss_pred eeccCCCc--eEEeeCCc----cEEEeecc---CcccccC-CHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHH
Confidence 56677776 79999999 99999996 46997 7 999999999999886642110 01256788999999
Q ss_pred HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCC
Q 003466 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (818)
Q Consensus 453 ~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~ 532 (818)
+++++. +..++++||++|++.|++.+. . +.+.|.+...+|+.+..++...|..
T Consensus 100 a~~~g~---~~~i~~~sGs~a~~~~~~~~~-----~-----------------~gd~v~~~~~~~~~~~~~~~~~g~~-- 152 (401)
T 1fc4_A 100 AAFLGM---EDAILYSSCFDANGGLFETLL-----G-----------------AEDAIISDALNHASIIDGVRLCKAK-- 152 (401)
T ss_dssp HHHHTC---SEEEEESCHHHHHHTTHHHHC-----C-----------------TTCEEEEETTCCHHHHHHHHTSCSE--
T ss_pred HHHhCC---CcEEEeCChHHHHHHHHHHHc-----C-----------------CCCEEEEcchhHHHHHHHHHHcCCc--
Confidence 999874 477788999999999988761 1 2346667777888766554443321
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
.+.+| ++|. +.+++.+++..
T Consensus 153 ----------------------------~~~~~--------------~~d~------------------~~l~~~l~~~~ 172 (401)
T 1fc4_A 153 ----------------------------RYRYA--------------NNDM------------------QELEARLKEAR 172 (401)
T ss_dssp ----------------------------EEEEC--------------TTCH------------------HHHHHHHHHHH
T ss_pred ----------------------------eEEEC--------------CCCH------------------HHHHHHHHHhh
Confidence 01111 1221 34555554200
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecc-cCc-ccCCccchhcccCCCC--cEE--E
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGCVP--DIA--C 686 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~-TGf-GRtG~~~a~e~~gv~P--Div--t 686 (818)
....++++|++++. ++..|.+.+ +++|.++|++||+++|+||++ +|| +++|+.+ .+.+++.| |++ +
T Consensus 173 --~~~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~di~~~s 244 (401)
T 1fc4_A 173 --EAGARHVLIATDGV-FSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVMGRVDIITGT 244 (401)
T ss_dssp --HTTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCTTCCSEEEEE
T ss_pred --ccCCCceEEEEeCC-cCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCCcCCcEEEec
Confidence 01116789999997 899998886 999999999999999999999 488 4677754 34566654 887 8
Q ss_pred ecccccCCccccceeecchHHHhhccCCh----------H-----------HH-------------HHHHHHHHHcCCCe
Q 003466 687 YGKLLTGGVIPLAATLATNAVFDSFVGDS----------K-----------LW-------------DLELIQQISSHRTV 732 (818)
Q Consensus 687 lgKgLggGy~PlsAvl~~~~i~~~l~~~~----------~-----------~~-------------~~~l~~~l~~~~~v 732 (818)
++|.++|+. .|++++++++++.+.... . .+ .+.+.+.+++++.
T Consensus 245 ~sK~~~~~~--gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~- 321 (401)
T 1fc4_A 245 LGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGF- 321 (401)
T ss_dssp SSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred chhhccCCC--CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 999998763 588889998887653211 0 01 0123344444432
Q ss_pred eEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC--------CEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 733 QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 733 ~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--------~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.-+.+.|.++.+++... ..+..+.+.|.++||++.+.. +.+|+.++..+|++|+++++++|.++
T Consensus 322 ~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (401)
T 1fc4_A 322 TLAGADHAIIPVMLGDA--------VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp CBCCSSSSEEEEEEECH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEEcCCh--------HHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 11245788888887532 346678899999999998742 47999999999999999999999999
Q ss_pred HHHH
Q 003466 805 LEEF 808 (818)
Q Consensus 805 l~~l 808 (818)
++++
T Consensus 394 ~~~~ 397 (401)
T 1fc4_A 394 GKQL 397 (401)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8765
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=234.64 Aligned_cols=335 Identities=13% Similarity=0.110 Sum_probs=231.3
Q ss_pred HHHHHhhccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCC-CCCHHHH
Q 003466 344 SERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELA 422 (818)
Q Consensus 344 ~~r~~~~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh-~~hp~V~ 422 (818)
-++++.+..+.....+..|. .|.++++++|. +++ .+|+ +|||+.++. ++|| . +|++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~g~--~~~-~~g~----~~idl~~~~---~~~~~~-~~~v~ 63 (398)
T 3a2b_A 6 GEKISQFKIVEELKAKGLYA-----------YFRPIQSKQDT--EVK-IDGR----RVLMFGSNS---YLGLTT-DTRII 63 (398)
T ss_dssp HHHHHTCCHHHHHHHTTCCC-----------SSCCBCSCSSS--EEE-ETTE----EEEECSCSC---TTCGGG-CHHHH
T ss_pred hhHHHHHHHHHHHHhcCccc-----------ceeeecCCCCc--eEE-ECCc----eEEEeeccc---ccCCCC-CHHHH
Confidence 34555555554444444442 13356677887 577 7899 999999863 3798 6 99999
Q ss_pred HHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCC
Q 003466 423 RDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (818)
Q Consensus 423 eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~ 498 (818)
+|+.+++++..+.. ...+..+...+++++|++..+. +.++++++|++|++.+++.+. .
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~---~~v~~~~ggt~a~~~~~~~~~-----~---------- 125 (398)
T 3a2b_A 64 KAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK---EAAILFSTGFQSNLGPLSCLM-----G---------- 125 (398)
T ss_dssp HHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHSS-----C----------
T ss_pred HHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----C----------
Confidence 99999998754211 1234567889999999998873 689999999999999999761 1
Q ss_pred CccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccc
Q 003466 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (818)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~ 578 (818)
+.+.|.+...+|+.+..++...|... +.+|
T Consensus 126 -------~gd~V~~~~p~~~~~~~~~~~~g~~~------------------------------~~v~------------- 155 (398)
T 3a2b_A 126 -------RNDYILLDERDHASIIDGSRLSFSKV------------------------------IKYG------------- 155 (398)
T ss_dssp -------TTCEEEEETTCCHHHHHHHHHSSSEE------------------------------EEEC-------------
T ss_pred -------CCCEEEECCccCHHHHHHHHHcCCce------------------------------EEeC-------------
Confidence 23456677778887766655543220 1111
Q ss_pred cccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEE
Q 003466 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (818)
Q Consensus 579 ~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI 658 (818)
++| .+.+++.+.+. ..+++++|+++++ ++..|.+.+ +++|.++|++||+++|
T Consensus 156 -~~d------------------~~~l~~~l~~~----~~~~~~~v~~~~~-~nptG~~~~----~~~l~~~~~~~~~~li 207 (398)
T 3a2b_A 156 -HNN------------------MEDLRAKLSRL----PEDSAKLICTDGI-FSMEGDIVN----LPELTSIANEFDAAVM 207 (398)
T ss_dssp -TTC------------------HHHHHHHHHTS----CSSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEE
T ss_pred -CCC------------------HHHHHHHHHhh----ccCCceEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEE
Confidence 122 15567777631 1126889999997 888888775 8999999999999999
Q ss_pred Eeeccc-C-cccCCccchhcccCCC--CcEE--EecccccCCccccceeecchHHHhhccCC-h-H--------------
Q 003466 659 FDEVFT-G-FWRLGVETTADLLGCV--PDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD-S-K-------------- 716 (818)
Q Consensus 659 ~DEV~T-G-fGRtG~~~a~e~~gv~--PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~-~-~-------------- 716 (818)
+||+++ | +|++|..+ .+.+++. +|++ +++|.++. +.|.+++++++++.+... . .
T Consensus 208 ~De~~~~~~~~~~~~~~-~~~~~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ 283 (398)
T 3a2b_A 208 VDDAHSLGVIGHKGAGT-ASHFGLNDDVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSVMFSASMTPASVAST 283 (398)
T ss_dssp EECTTTTTTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCS---SCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHH
T ss_pred EECCCcccccCCCCCch-HhhcCCCcCCeEEEecccccccC---CCcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHH
Confidence 999995 4 45655543 4556664 7888 99999982 115588898887765431 0 0
Q ss_pred --HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-
Q 003466 717 --LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL- 777 (818)
Q Consensus 717 --~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~- 777 (818)
.+ .+.+.+.+++.+ +.-+.+.|.++.+.+... ..+..+++.|+++||++.+.
T Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~ 354 (398)
T 3a2b_A 284 LKALEIIQNEPEHIEKLWKNTDYAKAQLLDHG-FDLGATESPILPIFIRSN--------EKTFWVTKMLQDDGVFVNPVV 354 (398)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHHHHHHHTT-CCBCSCCSSEEEEECCCH--------HHHHHHHHHHHHTTEECEEEC
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHhcC-CCcCCCCCCEEEEEcCCH--------HHHHHHHHHHHHCCcEEEeeC
Confidence 00 012233444443 222345577877776421 34667899999999999874
Q ss_pred -------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 778 -------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 778 -------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.+.+|+.++..+|++++++++++|.++++++.
T Consensus 355 ~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 355 SPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp TTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence 26899999998999999999999999987653
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=226.86 Aligned_cols=306 Identities=15% Similarity=0.107 Sum_probs=216.4
Q ss_pred EEEEeecCCeeEEEeCCcCccccceeecccccccccCC-CCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHH
Q 003466 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (818)
Q Consensus 377 ~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lG-h~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~ 451 (818)
.++.+++|. +++ .+|+ +|||+.++ .++| +. +|++.+|+.+++++++... +..+..+...+|.++
T Consensus 24 ~~~~~~~g~--~~~-~~g~----~~id~~~~---~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 92 (384)
T 1bs0_A 24 YPVAQGAGR--WLV-ADDR----QYLNFSSN---DYLGLSH-HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEE 92 (384)
T ss_dssp CCCSBCSSS--EEE-ETTE----EEEECSCC---CTTSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHH
T ss_pred ccccCCCCc--eEE-ECCc----eEEEeecc---CccCCCC-CHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHH
Confidence 356677887 566 6898 99999986 3489 57 9999999999998754311 112345788999999
Q ss_pred HHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 452 L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
|+++++ .+.+++++||++|++.+++.+ .++.+.|.++..+|+.+..++...|...
T Consensus 93 la~~~g---~~~~i~~~sGt~a~~~~~~~~----------------------~~~gd~v~~~~~~~~~~~~~~~~~g~~~ 147 (384)
T 1bs0_A 93 LAEWLG---YSRALLFISGFAANQAVIAAM----------------------MAKEDRIAADRLSHASLLEAASLSPSQL 147 (384)
T ss_dssp HHHHHT---CSEEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTCCHHHHHHHHTSSSEE
T ss_pred HHHHhC---CCcEEEeCCcHHHHHHHHHHh----------------------CCCCcEEEEcccccHHHHHHHHHcCCCE
Confidence 999987 357889999999999999865 1123567788889998776665543220
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
+.+| ++| .+.+++.+.+
T Consensus 148 ------------------------------~~~~--------------~~d------------------~~~l~~~l~~- 164 (384)
T 1bs0_A 148 ------------------------------RRFA--------------HND------------------VTHLARLLAS- 164 (384)
T ss_dssp ------------------------------EEEC--------------TTC------------------HHHHHHHHHS-
T ss_pred ------------------------------EEeC--------------CCC------------------HHHHHHHHHh-
Confidence 1111 122 1456777763
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-Cc-ccCCccchhcccCCCCcEE--Ee
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCVPDIA--CY 687 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv~PDiv--tl 687 (818)
...+.++|+++++ ++..|.+.+ +++|.++|++||+++|+||++. |+ +++|..+. +.++..||++ ++
T Consensus 165 ----~~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~di~~~s~ 234 (384)
T 1bs0_A 165 ----PCPGQQMVVTEGV-FSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTF 234 (384)
T ss_dssp ----CCSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHH-HHTTCCCSEEEEES
T ss_pred ----cCCCCeEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCchH-HhcCCCCcEEEeec
Confidence 2234689999987 899998886 8999999999999999999994 53 55666543 5677789998 99
Q ss_pred cccccCCccccceeecchHHHhhccCCh----------H-----------HHH----HH-----------HHHHHHcCCC
Q 003466 688 GKLLTGGVIPLAATLATNAVFDSFVGDS----------K-----------LWD----LE-----------LIQQISSHRT 731 (818)
Q Consensus 688 gKgLggGy~PlsAvl~~~~i~~~l~~~~----------~-----------~~~----~~-----------l~~~l~~~~~ 731 (818)
+|.++. |.|++++++++++.+.... . .+. ++ +.+.+++++
T Consensus 235 sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 310 (384)
T 1bs0_A 235 GKGFGV---SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP- 310 (384)
T ss_dssp SSTTSS---CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred cchhhc---cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC-
Confidence 999972 4577888988877543210 0 111 11 222333333
Q ss_pred eeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC--------CEEEEECCCCChHHHHHHHHHHHH
Q 003466 732 VQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 732 v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--------~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
+ .+. +.|.++.+.+... ..+..+.+.|.++||++.+.. +.+|+.++..+|++|+++++++|.
T Consensus 311 ~-~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~ 381 (384)
T 1bs0_A 311 F-TLADSCSAIQPLIVGDN--------SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLH 381 (384)
T ss_dssp C-EECSCCSSBCCEEEESH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHH
T ss_pred C-cccCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 2 232 4566666666421 346678999999999998741 689999999899999999999987
Q ss_pred HH
Q 003466 803 QR 804 (818)
Q Consensus 803 ~~ 804 (818)
++
T Consensus 382 ~~ 383 (384)
T 1bs0_A 382 GN 383 (384)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=222.62 Aligned_cols=322 Identities=10% Similarity=0.018 Sum_probs=215.6
Q ss_pred EeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC
Q 003466 380 DSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459 (818)
Q Consensus 380 ~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~ 459 (818)
.++.| +++||.+|+ +|||+..| . +..+. +|+|.+|+.+++++..+.. .....+...++++.+.+..+.+
T Consensus 14 ~~~~g--~~~~d~~g~----~~i~~~~~--~-~~~~~-~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~la~~l~~~~g~~ 82 (391)
T 3dzz_A 14 KRQGN--SIKWGVLKE----KELPMWIA--E-MDFKI-APEIMASMEEKLKVAAFGY-ESVPAEYYKAVADWEEIEHRAR 82 (391)
T ss_dssp CCCTT--BTTTTTCCT----TCEECCSS--C-CSSCC-CHHHHHHHHHHHTTCCCCC-BCCCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCC--ccceeccCC----Cceecccc--C-CCCCC-CHHHHHHHHHHHhcCcCCC-CCCCHHHHHHHHHHHHHHhCCC
Confidence 34555 479999999 99999975 2 33346 9999999999998643211 1124566778888888765411
Q ss_pred -CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCC
Q 003466 460 -WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (818)
Q Consensus 460 -~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~ 538 (818)
..+.++|+++|++|++.+++.+. ..| .+|++...+||+....+. ..|...
T Consensus 83 ~~~~~i~~~~g~~~a~~~~~~~l~-----~~g----------------d~vl~~~~~~~~~~~~~~-~~g~~~------- 133 (391)
T 3dzz_A 83 PKEDWCVFASGVVPAISAMVRQFT-----SPG----------------DQILVQEPVYNMFYSVIE-GNGRRV------- 133 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS-----CTT----------------CEEEECSSCCHHHHHHHH-HTTCEE-------
T ss_pred CCHHHEEECCCHHHHHHHHHHHhC-----CCC----------------CeEEECCCCcHHHHHHHH-HcCCEE-------
Confidence 13689999999999999999761 222 378999999998543322 222110
Q ss_pred CcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003466 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (818)
Q Consensus 539 p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~ 617 (818)
+.+|.... +-.| .| .+.+++.+.+
T Consensus 134 -----------------------~~~~~~~~-------~~~~~~d------------------~~~l~~~l~~------- 158 (391)
T 3dzz_A 134 -----------------------ISSDLIYE-------NSKYSVN------------------WADLEEKLAT------- 158 (391)
T ss_dssp -----------------------EECCCEEE-------TTEEECC------------------HHHHHHHHTS-------
T ss_pred -----------------------EEeeeeec-------CCceeec------------------HHHHHHHHhc-------
Confidence 01110000 0000 11 2567777752
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCC-CCc----EEEecccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGC-VPD----IACYGKLL 691 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv-~PD----ivtlgKgL 691 (818)
.++.+|+++.. ++..|.+. |+..+++|.++|++||+++|+||++++|++.|+ ......++. .|| +.+++|++
T Consensus 159 ~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~ 236 (391)
T 3dzz_A 159 PSVRMMVFCNP-HNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTF 236 (391)
T ss_dssp TTEEEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHH
T ss_pred cCceEEEEECC-CCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhc
Confidence 35777777775 88888766 678899999999999999999999999988885 334444443 388 56799999
Q ss_pred c-CCccccceeecc-hHHHhhccCChH-----------------H-------H----------HHHHHHHHHc-CCCeeE
Q 003466 692 T-GGVIPLAATLAT-NAVFDSFVGDSK-----------------L-------W----------DLELIQQISS-HRTVQR 734 (818)
Q Consensus 692 g-gGy~PlsAvl~~-~~i~~~l~~~~~-----------------~-------~----------~~~l~~~l~~-~~~v~~ 734 (818)
| +| +++|+++++ +++++.+..... . + .+.+.+.+++ ++.+.-
T Consensus 237 g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 315 (391)
T 3dzz_A 237 NLAA-LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKV 315 (391)
T ss_dssp TCTT-TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred cccc-hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 7 77 799999997 888775532110 0 0 1123344555 555544
Q ss_pred EEeeeeEE-EEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 735 VVALGTLC-AIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 735 vrg~Gl~~-~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+...|.++ .+.+.... ..+..+++.|+ ++||++.++ .+.+|+.++ +++++|++++++|.+++
T Consensus 316 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 386 (391)
T 3dzz_A 316 LDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGV 386 (391)
T ss_dssp CCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred eccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 44444443 35554321 12567888896 899999973 278999887 68999999999999988
Q ss_pred HHH
Q 003466 806 EEF 808 (818)
Q Consensus 806 ~~l 808 (818)
+++
T Consensus 387 ~~~ 389 (391)
T 3dzz_A 387 LNL 389 (391)
T ss_dssp HTC
T ss_pred HHh
Confidence 654
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-22 Score=217.44 Aligned_cols=313 Identities=12% Similarity=0.036 Sum_probs=205.7
Q ss_pred eecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC
Q 003466 381 SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG 459 (818)
Q Consensus 381 ~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~ 459 (818)
+++|. ++||.+|+ +||||.+|. ..++ . +|+|.+|+.+++++.. .+.. .+ .+...++++.+.+..+..
T Consensus 11 ~~~g~--~~~d~~g~----~~idl~~~~--~~~~-~-~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~ 78 (377)
T 3fdb_A 11 RARNT--MKWTRYGQ----GVLPLWVAE--SDFS-T-CPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQ 78 (377)
T ss_dssp HHTCC--HHHHSSCT----TSEECCSSC--CCSC-C-CHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCC
T ss_pred cCCCC--ceeeccCC----CeeeecccC--CCCC-C-CHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCC
Confidence 45554 79999999 999998863 3344 6 8999999999998632 2221 22 667777777777543311
Q ss_pred -CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCC
Q 003466 460 -WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (818)
Q Consensus 460 -~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~ 538 (818)
..+.++|+++|++|++.+++.+. ..| .+|++...+||+....+.. .|...
T Consensus 79 ~~~~~i~~t~g~~~a~~~~~~~~~-----~~g----------------d~vl~~~~~~~~~~~~~~~-~g~~~------- 129 (377)
T 3fdb_A 79 ARPEWIFPIPDVVRGLYIAIDHFT-----PAQ----------------SKVIVPTPAYPPFFHLLSA-TQREG------- 129 (377)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS-----CTT----------------CCEEEEESCCTHHHHHHHH-HTCCE-------
T ss_pred CCHHHEEEeCChHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcHhHHHHHHH-cCCEE-------
Confidence 13689999999999999999761 222 3689999999985533222 22110
Q ss_pred CcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 003466 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (818)
Q Consensus 539 p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~ 618 (818)
+.+|... + .| .+.+++.+.+ +
T Consensus 130 -----------------------~~~~~~~--------~---~d------------------~~~l~~~l~~-------~ 150 (377)
T 3fdb_A 130 -----------------------IFIDATG--------G---IN------------------LHDVEKGFQA-------G 150 (377)
T ss_dssp -----------------------EEEECTT--------S---CC------------------HHHHHHHHHT-------T
T ss_pred -----------------------EEccCCC--------C---CC------------------HHHHHHHhcc-------C
Confidence 0011000 0 01 2567777762 2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC-c----cchhcccCCCCcEEEeccccc-
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-V----ETTADLLGCVPDIACYGKLLT- 692 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG-~----~~a~e~~gv~PDivtlgKgLg- 692 (818)
..+.++..| ++..|.+. |.+.+++|.++|++||+++|+||++++|+++| . +.....++..+++.+++|++|
T Consensus 151 ~~~v~i~~p--~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 227 (377)
T 3fdb_A 151 ARSILLCNP--YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNI 227 (377)
T ss_dssp CCEEEEESS--BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTC
T ss_pred CCEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccC
Confidence 234455555 78888766 77889999999999999999999999998888 2 333333455567789999996
Q ss_pred CCccccceeec-chHHHhhccCChH----------------HH-----------------HHHHHHHHHc-CCCeeEEEe
Q 003466 693 GGVIPLAATLA-TNAVFDSFVGDSK----------------LW-----------------DLELIQQISS-HRTVQRVVA 737 (818)
Q Consensus 693 gGy~PlsAvl~-~~~i~~~l~~~~~----------------~~-----------------~~~l~~~l~~-~~~v~~vrg 737 (818)
+| +++|++++ ++++++.+..... .+ .+.+.+.+++ ++.+.-+..
T Consensus 228 ~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 306 (377)
T 3fdb_A 228 AG-LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM 306 (377)
T ss_dssp GG-GCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC
T ss_pred cc-hhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC
Confidence 67 79996655 7888776532211 00 0123344555 555544444
Q ss_pred eeeEE-EEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLC-AIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 738 ~Gl~~-~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.|.++ .+++.... . ...++..|+++ ||++.++ .+.+|+.++. ++++|++++++|.+++++
T Consensus 307 ~~~~~~~~~~~~~~----~----~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~--~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 307 QATYLMWIDFRDTT----I----EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT--SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp SBCSEEEEECTTSC----C----CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHTT
T ss_pred CeeEEEEEECcccC----C----CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 45444 46664321 0 12356777766 9999873 3789999873 899999999999988754
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=213.19 Aligned_cols=300 Identities=12% Similarity=0.061 Sum_probs=196.3
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeC
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSD 468 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~ 468 (818)
||+ +|+|+.+ +.++|++.+|+|.+|+.+++++++... ......+...++.++|+++++. +..++++
T Consensus 44 ~g~----~~i~~~~---~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~i~~~ 113 (401)
T 2bwn_A 44 GKQ----DITVWCG---NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK---EAALVFS 113 (401)
T ss_dssp CEE----EEEECSC---SCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC---SEEEEES
T ss_pred CCC----cEEEeeC---CCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CcEEEEC
Confidence 678 9999988 456777448999999999998865321 1112456788999999999874 4555568
Q ss_pred ChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCccc
Q 003466 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 469 SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~ 548 (818)
||++|++.+++++.+. ..| ..|+ ....+|++...++...|...
T Consensus 114 sG~~a~~~~~~~l~~~---~~g----------------d~Vl-~~~~~~~~~~~~~~~~g~~~----------------- 156 (401)
T 2bwn_A 114 SAYNANDATLSTLRVL---FPG----------------LIIY-SDSLNHASMIEGIKRNAGPK----------------- 156 (401)
T ss_dssp CHHHHHHHHHHHHHHH---STT----------------CEEE-EETTCCHHHHHHHHHSCCCE-----------------
T ss_pred CcHHHHHHHHHHHhcC---CCC----------------CEEE-ECchhhHHHHHHHHHcCCeE-----------------
Confidence 9999999999875221 111 2444 45556665554443332210
Q ss_pred CCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
+.+| ++| .+.+++.++. ...+++++|+++++
T Consensus 157 -------------~~v~--------------~~d------------------~~~le~~l~~----~~~~~~~~v~~~~~ 187 (401)
T 2bwn_A 157 -------------RIFR--------------HND------------------VAHLRELIAA----DDPAAPKLIAFESV 187 (401)
T ss_dssp -------------EEEC--------------TTC------------------HHHHHHHHHH----SCTTSCEEEEEESB
T ss_pred -------------EEEc--------------CCC------------------HHHHHHHHHh----hccCCceEEEEecC
Confidence 0111 122 1456666753 12246789999997
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-C-cccCCccchhcccCC--CCcEE--Eeccccc--CCccccce
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAA 700 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--tlgKgLg--gGy~PlsA 700 (818)
++..|.+.+ +++|.++|++||+++|+||+|+ | ||++|..+. ..+++ .+|++ ++||+++ |||
T Consensus 188 -~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~~GG~----- 256 (401)
T 2bwn_A 188 -YSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFGGY----- 256 (401)
T ss_dssp -CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCSCCEE-----
T ss_pred -cCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccCCCCE-----
Confidence 899998886 8999999999999999999998 3 677887655 55565 34554 8999998 554
Q ss_pred eecchHHHhhccC---------Ch-H-----------HH---------------HHHHHHHHHcCCCeeEEEeeeeEEEE
Q 003466 701 TLATNAVFDSFVG---------DS-K-----------LW---------------DLELIQQISSHRTVQRVVALGTLCAI 744 (818)
Q Consensus 701 vl~~~~i~~~l~~---------~~-~-----------~~---------------~~~l~~~l~~~~~v~~vrg~Gl~~~i 744 (818)
+++++++++.+.. .. . .+ .+.+.+.+++.+. .-+...|.++.+
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~ 335 (401)
T 2bwn_A 257 IAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGM-PIIDHGSHIVPV 335 (401)
T ss_dssp EEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTC-CBCCCSSSCEEE
T ss_pred EecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCC-cccCCCCCeEEE
Confidence 7777776654321 00 0 00 0112233333321 111123446666
Q ss_pred EEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+... ..+..+++.|+ ++||++.+. + +.+|+.++..+|++|+++++++|+++++++
T Consensus 336 ~~~~~--------~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 336 VIGDP--------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp ECCCH--------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred EeCCh--------HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 66421 34567888886 789999863 2 589999999999999999999999887654
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=214.25 Aligned_cols=321 Identities=10% Similarity=0.025 Sum_probs=211.0
Q ss_pred cCCeeEEEeCCcCccc-cceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-C
Q 003466 383 CGENFSVYQDQKNKFI-GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-W 460 (818)
Q Consensus 383 ~G~~~~v~D~dG~~~~-~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~ 460 (818)
+|.++++||.+|+.+. +.+||+.++ .+..+. +|+|.+|+.+++++..+. +.....+...+++++|++..+.+ .
T Consensus 15 ~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~-y~~~~~~~~~~l~~~l~~~~g~~~~ 89 (391)
T 4dq6_A 15 SNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKA-APCIIDSLKNRLEQEIYG-YTTRPDSYNESIVNWLYRRHNWKIK 89 (391)
T ss_dssp TTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCC-CHHHHHHHHHHHTTCCCC-CBCCCHHHHHHHHHHHHHHHCCCCC
T ss_pred ccCCceeeeecccccCCCCceecccc---CCCCCC-CHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 3444579999987111 234898875 334456 899999999999864322 12234677888999998876511 1
Q ss_pred CCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCc
Q 003466 461 ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540 (818)
Q Consensus 461 l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~ 540 (818)
.+.++|+++|++|++.+++.+. ..| .+|++...+||+....+.. .|...
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~-----~~g----------------d~vl~~~~~~~~~~~~~~~-~g~~~--------- 138 (391)
T 4dq6_A 90 SEWLIYSPGVIPAISLLINELT-----KAN----------------DKIMIQEPVYSPFNSVVKN-NNREL--------- 138 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHS-----CTT----------------CEEEECSSCCTHHHHHHHH-TTCEE---------
T ss_pred HHHeEEcCChHHHHHHHHHHhC-----CCC----------------CEEEEcCCCCHHHHHHHHH-cCCeE---------
Confidence 3689999999999999999771 222 3789999999986543322 22110
Q ss_pred ccCCCcccCCCcccccCcceeecCcch-hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 003466 541 YSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (818)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~v~~P~~-~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~ 619 (818)
+.+|.. +. .++ |. -| .+.+++.+. .
T Consensus 139 ---------------------~~~~~~~~~----------~~~----~~--~d--------~~~l~~~l~-------~-- 164 (391)
T 4dq6_A 139 ---------------------IISPLQKLE----------NGN----YI--MD--------YEDIENKIK-------D-- 164 (391)
T ss_dssp ---------------------EECCCEECT----------TSC----EE--CC--------HHHHHHHCT-------T--
T ss_pred ---------------------EeeeeeecC----------CCc----eE--ee--------HHHHHHHhh-------c--
Confidence 011100 00 000 00 00 256666664 2
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hccc-----CCCCcEEEeccccc-
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLL-----GCVPDIACYGKLLT- 692 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~-----gv~PDivtlgKgLg- 692 (818)
+.+|+++.. ++..|.+. |+..+++|.++|++||+++|+||++++|++.|+... ...+ +....+.+++|++|
T Consensus 165 ~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 242 (391)
T 4dq6_A 165 VKLFILCNP-HNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNI 242 (391)
T ss_dssp EEEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTC
T ss_pred CCEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccC
Confidence 667777765 78888866 778899999999999999999999999988876322 2221 22244568999997
Q ss_pred CCccccceeecch-HHHhhccCCh---------H--------H-------H----------HHHHHHHHHc-CCCeeEEE
Q 003466 693 GGVIPLAATLATN-AVFDSFVGDS---------K--------L-------W----------DLELIQQISS-HRTVQRVV 736 (818)
Q Consensus 693 gGy~PlsAvl~~~-~i~~~l~~~~---------~--------~-------~----------~~~l~~~l~~-~~~v~~vr 736 (818)
+| +++|++++++ ++++.+.... . . + .+.+.+.+++ .+.+..+.
T Consensus 243 ~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 321 (391)
T 4dq6_A 243 AG-LQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRK 321 (391)
T ss_dssp GG-GCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred cc-cceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecC
Confidence 67 7999999885 7766543210 0 0 0 1123344555 56665556
Q ss_pred eeeeEEE-EEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 737 ALGTLCA-IELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 737 g~Gl~~~-iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
..|.++. +++.... ..+..+++.|+++ ||+++++ .+.+|+.++ +++++|++++++|.+++
T Consensus 322 ~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 322 PEGTYLLWVDFSALG-------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp CSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEhhhcC-------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 6666655 6665311 1256788999998 9999873 278999988 68999999999998876
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=213.30 Aligned_cols=332 Identities=13% Similarity=0.030 Sum_probs=209.3
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhc
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~ 455 (818)
++....|.. + +.+|++...++|||.+|..+ ++..+|+|++|+.+++++... +....+..+...+++++|++.
T Consensus 21 ~~~~~~~~~--~-~~~~~~~~~~~id~~~g~~~---~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~ 94 (407)
T 3nra_A 21 VRQSAAGLE--A-LIRGAPIEGRPVDFSHGDVD---AHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAF 94 (407)
T ss_dssp ------CCT--T-TCCSCCCCSCCEETTSCCTT---TSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhH--H-HhhcCCCCCceeeecCcCCC---CCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 445555542 3 34555122249999986443 443389999999999986432 112234567888999999987
Q ss_pred cCCCC--CCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 456 VGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 456 ~~~~~--l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
.+.+. .+.++|+++|++|++.+++.+. ..| ..|++...+||+.. .++...|....
T Consensus 95 ~g~~~~~~~~i~~~~g~~~a~~~~~~~l~-----~~g----------------d~vl~~~~~~~~~~-~~~~~~g~~~~- 151 (407)
T 3nra_A 95 TGAPVDARDGLIITPGTQGALFLAVAATV-----ARG----------------DKVAIVQPDYFANR-KLVEFFEGEMV- 151 (407)
T ss_dssp HTSCCCTTTSEEEESHHHHHHHHHHHTTC-----CTT----------------CEEEEEESCCTHHH-HHHHHTTCEEE-
T ss_pred hCCCCCCCCcEEEeCCcHHHHHHHHHHhC-----CCC----------------CEEEEcCCcccchH-HHHHHcCCEEE-
Confidence 76320 1589999999999999998651 112 36888888888744 22333322110
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.+|..+.. ..+. .+ ..| .+.+++.+.+
T Consensus 152 -----------------------------~~~~~~~~---------~~~~--~~--~~d--------~~~l~~~l~~--- 178 (407)
T 3nra_A 152 -----------------------------PVQLDYVS---------ADET--RA--GLD--------LTGLEEAFKA--- 178 (407)
T ss_dssp -----------------------------EEEBCCCS---------SCCS--SC--CBC--------HHHHHHHHHT---
T ss_pred -----------------------------Eeeccccc---------ccCc--CC--CcC--------HHHHHHHHhh---
Confidence 01100000 0000 00 001 2567777752
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcc-----cCCCCcEEEe
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL-----LGCVPDIACY 687 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~-----~gv~PDivtl 687 (818)
++.+|++... ++..|.+. |.+.+++|.++|++||+++|+||++++|++.|+.+. ... ++...++.++
T Consensus 179 -----~~~~v~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~ 251 (407)
T 3nra_A 179 -----GARVFLFSNP-NNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGP 251 (407)
T ss_dssp -----TCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECS
T ss_pred -----CCcEEEEcCC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCc
Confidence 3445555544 78788766 888999999999999999999999999888876433 333 2333456689
Q ss_pred ccccc-CCccccceeecchHHHhhccCChH---------------------------------HHHHHHHHHHHcCCCee
Q 003466 688 GKLLT-GGVIPLAATLATNAVFDSFVGDSK---------------------------------LWDLELIQQISSHRTVQ 733 (818)
Q Consensus 688 gKgLg-gGy~PlsAvl~~~~i~~~l~~~~~---------------------------------~~~~~l~~~l~~~~~v~ 733 (818)
+|.+| .| +++|++++++++++.+..... ...+.+.+.+++++.+.
T Consensus 252 sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 330 (407)
T 3nra_A 252 SKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVF 330 (407)
T ss_dssp SSTTCCGG-GCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCB
T ss_pred ccccCCCe-eeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 99998 77 799999999998776532111 01123445566665554
Q ss_pred EEEeee-eEEEEEEecCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 734 RVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 734 ~vrg~G-l~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.+...| .++.+.+.... ..+..+++.|++ +||++.++ .+.+|++++. ++++|++++++|.++
T Consensus 331 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~ 401 (407)
T 3nra_A 331 ARTPQAGSYLFPRLPKLA-------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAARRIVTL 401 (407)
T ss_dssp CCCCSBSSEECCBCCCBS-------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHHHHHHH
T ss_pred eccCCeeEEEEEeCCCCC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence 444444 55555554311 125567888875 59999873 3789999884 899999999999999
Q ss_pred HHHH
Q 003466 805 LEEF 808 (818)
Q Consensus 805 l~~l 808 (818)
++++
T Consensus 402 ~~~~ 405 (407)
T 3nra_A 402 VERY 405 (407)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=208.31 Aligned_cols=325 Identities=9% Similarity=-0.013 Sum_probs=207.9
Q ss_pred CCeeEEEeCCcCccc---cceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-
Q 003466 384 GENFSVYQDQKNKFI---GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG- 459 (818)
Q Consensus 384 G~~~~v~D~dG~~~~---~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~- 459 (818)
|.++++||.+|+.+. +++||+.++. ..++ . +|+|.+|+.++++.... .+.....+...++++.+.+..+.+
T Consensus 13 ~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~-~y~~~~~~l~~~la~~l~~~~g~~~ 87 (399)
T 1c7n_A 13 NLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-N-PPELIEGLKKYLDETVL-GYTGPTEEYKKTVKKWMKDRHQWDI 87 (399)
T ss_dssp TTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-C-CHHHHHHHHHHHHHCCC-SSBCCCHHHHHHHHHHHHHHHCCCC
T ss_pred CCCccccccchhhccccCCCceeeeecC--CCCC-C-CHHHHHHHHHHHhcCCC-CCCCCcHHHHHHHHHHHHHHhCCCC
Confidence 444579999985332 2789997754 3344 4 89999999999875211 111113345555555555444411
Q ss_pred CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCC
Q 003466 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (818)
Q Consensus 460 ~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p 539 (818)
..+.++++++|++|++.+++.+. ..| .+|++...+||+....+.. .|...
T Consensus 88 ~~~~v~~t~g~~~a~~~~~~~l~-----~~g----------------d~vl~~~p~~~~~~~~~~~-~g~~~-------- 137 (399)
T 1c7n_A 88 QTDWIINTAGVVPAVFNAVREFT-----KPG----------------DGVIIITPVYYPFFMAIKN-QERKI-------- 137 (399)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEECSSCCTHHHHHHHT-TTCEE--------
T ss_pred ChhhEEEcCCHHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcHhHHHHHHH-cCCEE--------
Confidence 13689999999999999999761 122 3799999999996543322 22110
Q ss_pred cccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 003466 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (818)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~ 618 (818)
+.+|.... +-.| .| .+.+++.+.+ .
T Consensus 138 ----------------------~~~~~~~~-------~g~~~~d------------------~~~l~~~l~~-------~ 163 (399)
T 1c7n_A 138 ----------------------IECELLEK-------DGYYTID------------------FQKLEKLSKD-------K 163 (399)
T ss_dssp ----------------------EECCCEEE-------TTEEECC------------------HHHHHHHHTC-------T
T ss_pred ----------------------EecccccC-------CCCEEEc------------------HHHHHHHhcc-------C
Confidence 00110000 0000 11 2567777752 3
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcc-----cCCCCcEEEeccccc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL-----LGCVPDIACYGKLLT 692 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~-----~gv~PDivtlgKgLg 692 (818)
++++|++... ++..|.+. |++++++|.++|++||+++|+||++++|++.|.. ..... .+...++.+++|.+|
T Consensus 164 ~~~~v~~~~~-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 241 (399)
T 1c7n_A 164 NNKALLFCSP-HNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFN 241 (399)
T ss_dssp TEEEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHT
T ss_pred CCcEEEEcCC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhcc
Confidence 5677777654 78788765 7899999999999999999999999999887752 22222 233345668999998
Q ss_pred -CCccccceeecc-hHHHhhccC--------C-hH--------HH-----------------HHHHHHHHHc-CCCeeEE
Q 003466 693 -GGVIPLAATLAT-NAVFDSFVG--------D-SK--------LW-----------------DLELIQQISS-HRTVQRV 735 (818)
Q Consensus 693 -gGy~PlsAvl~~-~~i~~~l~~--------~-~~--------~~-----------------~~~l~~~l~~-~~~v~~v 735 (818)
+| +++|+++++ +++++.+.. . .. .+ .+.+.+.+++ ++.+..+
T Consensus 242 ~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 320 (399)
T 1c7n_A 242 IAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (399)
T ss_dssp CGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred ccc-hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 78 799999997 567765421 1 11 11 0123344555 5555545
Q ss_pred EeeeeEE-EEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLC-AIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 736 rg~Gl~~-~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
++.|.++ .+++.... ..+..+++.|+ ++||++.++ .+.+|+.++.. +++|++++++|.++++
T Consensus 321 ~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~~~l~~l~~~l~ 391 (399)
T 1c7n_A 321 LIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAP--SSVIQESLERLNKALK 391 (399)
T ss_dssp CCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSC--HHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEcccCC-------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccC--HHHHHHHHHHHHHHHH
Confidence 5555554 46664310 01456888897 789999873 36899999864 7899999999999987
Q ss_pred HHH
Q 003466 807 EFD 809 (818)
Q Consensus 807 ~l~ 809 (818)
++.
T Consensus 392 ~~~ 394 (399)
T 1c7n_A 392 DLK 394 (399)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=192.82 Aligned_cols=205 Identities=22% Similarity=0.270 Sum_probs=157.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCC------CchHHHHHhccCCccccCCCcccc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHD------SDSRFLFTKLPSLSLRRNFPSSLI 111 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~------~d~~~~~~~~~~~~~~~~~~~~~~ 111 (818)
+.|+|+++.+|+||||+|+.|+.+|. ++|+||.++||++++.... .|..++.... +
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la-----~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~-~------------ 63 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAK-----AAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNS-S------------ 63 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTC-S------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCCEEEEcceecCCccCCCCcChHHHHHHHHHh-C------------
Confidence 57999999999999999999999994 7899999999988764321 1212111110 0
Q ss_pred cccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCC
Q 003466 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGV 191 (818)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~ 191 (818)
... .....+++.+..|.+|++++..+ +..
T Consensus 64 -------------------~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~ 92 (224)
T 1byi_A 64 -------------------LQL-------------------------------DYATVNPYTFAEPTSPHIISAQE-GRP 92 (224)
T ss_dssp -------------------SCC-------------------------------CHHHHCSEEESSCSCHHHHHHHH-TCC
T ss_pred -------------------CCC-------------------------------ChhhcccEEeCCCCCHHHHHHHc-CCC
Confidence 000 00113456777889999987766 666
Q ss_pred CChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003466 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (818)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (818)
...+.+.+.++++.++ ||+|||||+||+.+|......++++++.++.|||+|+....++++++..++
T Consensus 93 ~~~~~l~~~l~~l~~~-------------yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i 159 (224)
T 1byi_A 93 IESLVMSAGLRALEQQ-------------ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA 159 (224)
T ss_dssp CCHHHHHHHHHHHHTT-------------CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------CCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHH
Confidence 7788888888887655 999999999999999766688999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCCEEe-cCCCC-CCCcchhhhhhh
Q 003466 272 ESLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLP-QDSSNDLMEWFD 326 (818)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-iP~~~-~~~~~~~~~~l~ 326 (818)
+.++..++++.|+|+|++... ..+.+++.+ ++|+++ ||+.+ .....++.++++
T Consensus 160 ~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~--~~~vl~~Ip~~~~~~~~~~~~~~~~ 220 (224)
T 1byi_A 160 QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMI--PAPLLGEIPWLAENPENAATGKYIN 220 (224)
T ss_dssp HHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHS--SSCEEEEECCCTTCTTCCCCGGGCC
T ss_pred HHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHc--CCCEEEECCCCcCCccHHHHHHHhc
Confidence 999988999999999998432 123444545 899999 99988 433335666664
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=204.98 Aligned_cols=314 Identities=15% Similarity=0.094 Sum_probs=202.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc-C--CCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-F--PENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~-~--~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e 475 (818)
++|||.+|... ..||. +|+|.+|+.+++++..... + ..+..+...++++.+.+..+.+ ..+.++|+++|++|++
T Consensus 35 ~~idl~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~ 112 (407)
T 2zc0_A 35 KLISLAAGDPD-PELIP-RAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALD 112 (407)
T ss_dssp CCEECCSCCCC-TTTSC-HHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHH
T ss_pred ceEeCCCCCCC-chhCC-HHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHH
Confidence 89999987754 45888 9999999999998743111 1 1122344455555554433411 1368999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.+. ..| .+|++.+.+||+.... +...|..
T Consensus 113 ~~~~~~~-----~~g----------------d~vl~~~p~~~~~~~~-~~~~g~~------------------------- 145 (407)
T 2zc0_A 113 LLGRVLI-----DPG----------------DVVITENPSYINTLLA-FEQLGAK------------------------- 145 (407)
T ss_dssp HHHHHHC-----CTT----------------CEEEEEESCCHHHHHH-HHTTTCE-------------------------
T ss_pred HHHHHhc-----CCC----------------CEEEEeCCChHHHHHH-HHHcCCE-------------------------
Confidence 9999871 122 3799999999985432 2222211
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+.+|... + ..| .+.+++.+.... ....++++|++.|..++..|.
T Consensus 146 -----~~~v~~~~--------~--~~d------------------~~~l~~~l~~~~--~~~~~~~~v~~~~~~~nptG~ 190 (407)
T 2zc0_A 146 -----IEGVPVDN--------D--GMR------------------VDLLEEKIKELK--AKGQKVKLIYTIPTGQNPMGV 190 (407)
T ss_dssp -----EEEEEEET--------T--EEC------------------HHHHHHHHHHHH--HTTCCEEEEEECCSSCTTTCC
T ss_pred -----EEEcccCC--------C--CCC------------------HHHHHHHHHhhh--cccCCceEEEECCCCCCCCCc
Confidence 00111000 0 011 145666664100 012367787544434788888
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccC---CCCcEEEecccccCCccccceeecchHHHhhc
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLG---CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~g---v~PDivtlgKgLggGy~PlsAvl~~~~i~~~l 711 (818)
+. |.+++++|.++|++||+++|+||++++|.+.|+. .....++ ...++.+++|.++.| +++|++++++++++.+
T Consensus 191 ~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~ 268 (407)
T 2zc0_A 191 TM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTG-FRIGWIIAEGEILKKV 268 (407)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTT-SCCEEEECCHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCC-cceEEEecCHHHHHHH
Confidence 65 7899999999999999999999999998777763 2233333 234567899999988 7999999999887755
Q ss_pred cCC--------hH--------HH-----H-H--------------HHHHHHHc-CCCeeEE-EeeeeEEEEEEecCcccC
Q 003466 712 VGD--------SK--------LW-----D-L--------------ELIQQISS-HRTVQRV-VALGTLCAIELQAAGCNA 753 (818)
Q Consensus 712 ~~~--------~~--------~~-----~-~--------------~l~~~l~~-~~~v~~v-rg~Gl~~~iel~~~~~~~ 753 (818)
... .. .+ . + .+.+.+++ .+.+.-+ ...|.++.+.+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---- 344 (407)
T 2zc0_A 269 LMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEG---- 344 (407)
T ss_dssp HHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTT----
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCC----
Confidence 321 00 11 1 1 12233443 3433222 23566777777432
Q ss_pred CCchHHHHHHHHHHHhC-CceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLRED-GVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e~-Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
..+..+++.|.++ ||++.++ .+.+|+.++.. |++||++++++|.++++++
T Consensus 345 ----~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 345 ----ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp ----CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 1245688899988 9999862 36899999876 8999999999999998765
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=203.41 Aligned_cols=319 Identities=11% Similarity=0.023 Sum_probs=201.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc----cccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA 473 (818)
.+||+.+|.. .+| . +|+|.+|+.+++++.. .+....+..+...++++.+.+..+.+ ..+ .++|+++|++|
T Consensus 38 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-A-PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp CCEECCSSSC--SSC-C-CHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 6899988754 466 5 8999999999997632 11111123455566666665544421 136 89999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
++.+++.+. ..| .+|++.+.+||+....+ ...|....
T Consensus 114 ~~~~~~~~~-----~~g----------------d~Vl~~~p~y~~~~~~~-~~~g~~~~--------------------- 150 (429)
T 1yiz_A 114 LYATIQGHV-----DEG----------------DEVIIIEPFFDCYEPMV-KAAGGIPR--------------------- 150 (429)
T ss_dssp HHHHHHHHC-----CTT----------------CEEEEEESCCTTHHHHH-HHTTCEEE---------------------
T ss_pred HHHHHHHhc-----CCC----------------CEEEEcCCCchhHHHHH-HHcCCEEE---------------------
Confidence 999999871 122 37999999999965332 22222110
Q ss_pred cccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
.++....-. ........| .| .+.+++.+. .++++|++++. ++.
T Consensus 151 -------~~~~~~~~~--~~~~~~~~~~~d------------------~~~l~~~l~--------~~~~~v~~~~p-~np 194 (429)
T 1yiz_A 151 -------FIPLKPNKT--GGTISSADWVLD------------------NNELEALFN--------EKTKMIIINTP-HNP 194 (429)
T ss_dssp -------EEECBCCCS--SSSEEGGGCBCC------------------HHHHHHHCC--------TTEEEEEEESS-CTT
T ss_pred -------EEeCCcccc--cccccccCcccC------------------HHHHHHHhc--------cCceEEEECCC-CCC
Confidence 000000000 000000000 11 255666653 36788998886 888
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc----chhc-ccCCCCcEEEeccccc-CCccccceeecchH
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNA 706 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~----~a~e-~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~ 706 (818)
.|.+. |++++++|.++|++||+++|+||++++|++.|.. .... .++..+++.+++|.+| +| +++|+++++++
T Consensus 195 tG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~ 272 (429)
T 1yiz_A 195 LGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEA 272 (429)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHH
T ss_pred CCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHH
Confidence 88776 7899999999999999999999999999887752 1221 3456667889999998 78 79999999999
Q ss_pred HHhhccCChH----------------HHHH------------------------HHHHHHHcCCCeeEEEeeeeEEEEEE
Q 003466 707 VFDSFVGDSK----------------LWDL------------------------ELIQQISSHRTVQRVVALGTLCAIEL 746 (818)
Q Consensus 707 i~~~l~~~~~----------------~~~~------------------------~l~~~l~~~~~v~~vrg~Gl~~~iel 746 (818)
+++.+..... .+.. .+.+.+++++........|+++.+++
T Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~ 352 (429)
T 1yiz_A 273 LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADW 352 (429)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECSBSSEEEEEC
T ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEEc
Confidence 8875532100 1111 12233444433211222477888887
Q ss_pred ecCcccCC----CchHHHHHHHHHHH-hCCceEeec------------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAG----YGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 747 ~~~~~~~~----~~~~~a~~~~~~l~-e~Gvlv~p~------------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
........ ........+++.|+ ++||++.++ ++.+|+.++ .++++|++++++|.+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 353 SSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWK 426 (429)
T ss_dssp CSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHHHHHhc
Confidence 54210000 00013456788786 799999863 468999998 48999999999998875
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=198.85 Aligned_cols=323 Identities=10% Similarity=0.053 Sum_probs=195.6
Q ss_pred cCCeeEEEeCCcCcc-ccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCCh-hHHHHHHHHHhccC--C
Q 003466 383 CGENFSVYQDQKNKF-IGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-PALECAELLLQGVG--K 458 (818)
Q Consensus 383 ~G~~~~v~D~dG~~~-~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~-~~~eLae~L~~~~~--~ 458 (818)
+|.++++||.+|+.+ .++||||.++. ..+| . +|+|.+|+.++++.... .+.....+ ...++++.+.+..+ .
T Consensus 11 ~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~-~y~~~~~~~lr~~la~~l~~~~g~~~ 85 (390)
T 1d2f_A 11 HGTWCTQWDYVADRFGTADLLPFTISD--MDFA-T-APCIIEALNQRLMHGVF-GYSRWKNDEFLAAIAHWFSTQHYTAI 85 (390)
T ss_dssp -------------------CEECCSSS--CSSC-C-CHHHHHHHHHHHTTCCC-CCCCSCCHHHHHHHHHHHHHHSCCCC
T ss_pred cCCCccchhhhccccCCCCeeEeeecC--CCCC-C-CHHHHHHHHHHHhCCCC-CCCCCChHHHHHHHHHHHHHhcCCCC
Confidence 445568999999622 12689997653 3466 5 89999999999875211 11112445 66677777765443 1
Q ss_pred CCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCC
Q 003466 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (818)
Q Consensus 459 ~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~ 538 (818)
. .+.++++++|++|++.+++.+. ..| .+|++.+.+||+....+.. .|...
T Consensus 86 ~-~~~v~~t~g~~~al~~~~~~l~-----~~g----------------d~vl~~~p~y~~~~~~~~~-~g~~~------- 135 (390)
T 1d2f_A 86 D-SQTVVYGPSVIYMVSELIRQWS-----ETG----------------EGVVIHTPAYDAFYKAIEG-NQRTV------- 135 (390)
T ss_dssp C-GGGEEEESCHHHHHHHHHHHSS-----CTT----------------CEEEEEESCCHHHHHHHHH-TTCEE-------
T ss_pred C-HHHEEEcCCHHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcHHHHHHHHH-CCCEE-------
Confidence 1 3689999999999999999761 122 4799999999986543322 22110
Q ss_pred CcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003466 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (818)
Q Consensus 539 p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~ 617 (818)
..++.... +-.| .| .+.+++.+..
T Consensus 136 ---------------------~~v~~~~~---------~~~~~~d------------------~~~l~~~l~~------- 160 (390)
T 1d2f_A 136 ---------------------MPVALEKQ---------ADGWFCD------------------MGKLEAVLAK------- 160 (390)
T ss_dssp ---------------------EEEECEEC---------SSSEECC------------------HHHHHHHHTS-------
T ss_pred ---------------------EEeecccC---------CCccccC------------------HHHHHHHhcc-------
Confidence 00111000 0000 11 2567777752
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCC---c-EEEeccccc-
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP---D-IACYGKLLT- 692 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P---D-ivtlgKgLg- 692 (818)
.++++|++... ++..|.+. |.+++++|.++|++||+++|+||++++|++.|+.+.. ...+.+ | +.+++|.+|
T Consensus 161 ~~~~~v~l~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~d~~~s~sK~~~~ 237 (390)
T 1d2f_A 161 PECKIMLLCSP-QNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWALLTSGSKSFNI 237 (390)
T ss_dssp TTEEEEEEESS-CTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEEEECSHHHHTC
T ss_pred CCCeEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcC-HHHcchhhHhhccCccHhhcc
Confidence 25677776543 77788775 6789999999999999999999999999887764321 122323 3 889999998
Q ss_pred CCccccceeecc-hHHHhhccC---------C-hH--------HHH-----------------HHHHHHHHc-CCCeeEE
Q 003466 693 GGVIPLAATLAT-NAVFDSFVG---------D-SK--------LWD-----------------LELIQQISS-HRTVQRV 735 (818)
Q Consensus 693 gGy~PlsAvl~~-~~i~~~l~~---------~-~~--------~~~-----------------~~l~~~l~~-~~~v~~v 735 (818)
+| +++|+++++ +++++.+.. . .. .+. +.+.+.+++ ++.+..+
T Consensus 238 ~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 316 (390)
T 1d2f_A 238 PA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ 316 (390)
T ss_dssp GG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred cC-hhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEe
Confidence 78 699999985 676553311 1 11 010 123344555 5555444
Q ss_pred Eeeee-EEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 736 VALGT-LCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 736 rg~Gl-~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
++.|. ++.+++.... ..+..+++.|. ++||++.++ .+.+|+.++. ++++|++++++|.++++
T Consensus 317 ~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 387 (390)
T 1d2f_A 317 IPQSTYLAWLDLRPLN-------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLINAIR 387 (390)
T ss_dssp CCSBCSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEEccccC-------CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 55554 4456664310 01456888898 689999873 3689999986 47899999999999886
Q ss_pred HH
Q 003466 807 EF 808 (818)
Q Consensus 807 ~l 808 (818)
++
T Consensus 388 ~~ 389 (390)
T 1d2f_A 388 AV 389 (390)
T ss_dssp HH
T ss_pred hh
Confidence 53
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-19 Score=195.47 Aligned_cols=294 Identities=12% Similarity=0.099 Sum_probs=198.3
Q ss_pred CCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChh
Q 003466 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGs 471 (818)
.+|+ ++|||.++. +.++ . +|+|.+|+.++++.+... ..+...++.++|+++++.. .+.++|+++|+
T Consensus 23 ~~~~----~~idl~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y-----~~~~~~~l~~~la~~~~~~-~~~i~~~~g~t 88 (361)
T 3ftb_A 23 FKGR----ELLDYSSNI--NPLG-I-PKSFLNNIDEGIKNLGVY-----PDVNYRRLNKSIENYLKLK-DIGIVLGNGAS 88 (361)
T ss_dssp ---------CEETTCCC--CTTC-S-CHHHHTTHHHHHHGGGSC-----CCTTCHHHHHHHHHHHTCC-SCEEEEESSHH
T ss_pred cCCC----CEEEecCCC--CCCC-C-CHHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHHHhCCC-cceEEEcCCHH
Confidence 4888 999999864 3455 4 899999999999875332 2234467888888877632 36899999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCC
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p 551 (818)
+|++.+++.+ .+||+...+||+....+... |...
T Consensus 89 ~al~~~~~~~-------------------------d~vi~~~~~~~~~~~~~~~~-g~~~-------------------- 122 (361)
T 3ftb_A 89 EIIELSISLF-------------------------EKILIIVPSYAEYEINAKKH-GVSV-------------------- 122 (361)
T ss_dssp HHHHHHHTTC-------------------------SEEEEEESCCTHHHHHHHHT-TCEE--------------------
T ss_pred HHHHHHHHHc-------------------------CcEEEecCChHHHHHHHHHc-CCeE--------------------
Confidence 9999998854 27899999999855332222 2110
Q ss_pred cccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 003466 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (818)
Q Consensus 552 ~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g 631 (818)
..++.... +. + . .+.+++.+. . +.+|+++.. ++
T Consensus 123 --------~~~~~~~~-------------~~----~-------~-----~~~l~~~l~-------~--~~~v~i~~p-~n 155 (361)
T 3ftb_A 123 --------VFSYLDEN-------------MC----I-------D-----YEDIISKID-------D--VDSVIIGNP-NN 155 (361)
T ss_dssp --------EEEECCTT-------------SC----C-------C-----HHHHHHHTT-------T--CSEEEEETT-BT
T ss_pred --------EEeecCcc-------------cC----C-------C-----HHHHHHhcc-------C--CCEEEEeCC-CC
Confidence 00111000 00 0 0 145666664 2 345555443 67
Q ss_pred CCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccccceee-cchH
Q 003466 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATL-ATNA 706 (818)
Q Consensus 632 ~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~PlsAvl-~~~~ 706 (818)
..|.+. |.+.+++|.++|++||+++|+||++++|++.+........+..++++ +++|.+| +| +++|+++ ++++
T Consensus 156 ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~g~~~~~~~~ 233 (361)
T 3ftb_A 156 PNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPG-IRFGYGITNNKE 233 (361)
T ss_dssp TTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGG-GCCEEEEESCHH
T ss_pred CCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCC-cceeEEEeCCHH
Confidence 777766 78889999999999999999999999887753233334444444443 7899998 77 7999988 8999
Q ss_pred HHhhccCChH------------------------------HHHHHHHHHHHcCCCee-EEEeeeeEEEEEEecCcccCCC
Q 003466 707 VFDSFVGDSK------------------------------LWDLELIQQISSHRTVQ-RVVALGTLCAIELQAAGCNAGY 755 (818)
Q Consensus 707 i~~~l~~~~~------------------------------~~~~~l~~~l~~~~~v~-~vrg~Gl~~~iel~~~~~~~~~ 755 (818)
+++.+..... ...+.+.+.+++++.+. .+.+.|.++.+.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------ 307 (361)
T 3ftb_A 234 IAAKIKAKQNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANFVLCRLENI------ 307 (361)
T ss_dssp HHHHHHTTSCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSSEEEEEESSS------
T ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCeEEEEEcCCC------
Confidence 8887643211 01123445566777776 6778888888877541
Q ss_pred chHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 756 ~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.+..+++.|.++||++.++ .+.+|+.++ +++++++++++|++..+
T Consensus 308 ---~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 308 ---SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp ---CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 1457889999999999973 378999976 78888898888877654
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-20 Score=203.67 Aligned_cols=308 Identities=16% Similarity=0.147 Sum_probs=203.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCC-ChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~-~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~AL 478 (818)
++|||.+|..+ ..||. +|++.+|+.+++++.+.... .+. .....+|.++|+++++.. .+.++++++|++|++.++
T Consensus 33 ~~i~l~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~~-~y~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 33 GILSFAGGLPA-PELFP-KEEAAEAAARILREKGEVAL-QYSPTEGYAPLRAFVAEWIGVR-PEEVLITTGSQQALDLVG 108 (397)
T ss_dssp TCEEESSCCCC-GGGCC-HHHHHHHHHHHHHHHHHHHT-SCCCTTCCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHH
T ss_pred CceecCCCCCC-chhCC-HHHHHHHHHHHHHhcchhhh-CCCCCCCCHHHHHHHHHHhCCC-hhhEEEeccHHHHHHHHH
Confidence 79999987764 45888 99999999999886431110 111 123456777777766522 368999999999999999
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
+.+. ..| .+|++...+||+....+.. .|..
T Consensus 109 ~~~~-----~~g----------------d~Vl~~~p~y~~~~~~~~~-~g~~---------------------------- 138 (397)
T 2zyj_A 109 KVFL-----DEG----------------SPVLLEAPSYMGAIQAFRL-QGPR---------------------------- 138 (397)
T ss_dssp HHHC-----CTT----------------CEEEEEESCCHHHHHHHHT-TCCE----------------------------
T ss_pred HHhC-----CCC----------------CEEEEeCCCcHHHHHHHHH-cCCE----------------------------
Confidence 9761 222 3789999999986533222 1111
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
.+.+|... + ..| .+.+++.+.+ .++++|++-|-.++..|.+.
T Consensus 139 --~~~~~~~~--------~--~~d------------------~~~l~~~l~~-------~~~~~v~~~~~~~nptG~~~- 180 (397)
T 2zyj_A 139 --FLTVPAGE--------E--GPD------------------LDALEEVLKR-------ERPRFLYLIPSFQNPTGGLT- 180 (397)
T ss_dssp --EEEEEEET--------T--EEC------------------HHHHHHHHHH-------CCCSCEEECCBSCTTTCCBC-
T ss_pred --EEecCcCC--------C--CCC------------------HHHHHHHHhh-------cCCeEEEECCCCcCCCCCcC-
Confidence 00111000 0 011 2566777752 24556643332377778765
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccCC------CCcEEEecccccCCccccceeecchHHHhhc
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGC------VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv------~PDivtlgKgLggGy~PlsAvl~~~~i~~~l 711 (818)
|.+++++|.++|++||+++|+||++++|++.|.. .....++. ...+.+++|.+++| +++|++++++++++.+
T Consensus 181 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l 259 (397)
T 2zyj_A 181 PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG-LRVAFAVAHPEALQKL 259 (397)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc-ceeEEEecCHHHHHHH
Confidence 7899999999999999999999999999887763 22233322 23356899999988 7999999999887755
Q ss_pred cCCh--------H-------------HH---H----------HHHHHHHHc-CC-CeeEEE-eeeeEEEEEEecCcccCC
Q 003466 712 VGDS--------K-------------LW---D----------LELIQQISS-HR-TVQRVV-ALGTLCAIELQAAGCNAG 754 (818)
Q Consensus 712 ~~~~--------~-------------~~---~----------~~l~~~l~~-~~-~v~~vr-g~Gl~~~iel~~~~~~~~ 754 (818)
.... . .+ . +.+.+.+++ .+ .+..+. ..|.++.+++...
T Consensus 260 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~----- 334 (397)
T 2zyj_A 260 VQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKG----- 334 (397)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTT-----
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCC-----
Confidence 3211 0 00 0 112233443 34 243322 4567777777532
Q ss_pred CchHHHHHHHHHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+++.|.++||++.++ .+.+|+.++.. ++++|++++++|.++++++.
T Consensus 335 ---~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 335 ---LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp ---CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 12457889999999999872 37899999874 89999999999999987764
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=204.48 Aligned_cols=328 Identities=11% Similarity=0.029 Sum_probs=202.3
Q ss_pred EEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc--------CCCCC-ChhHHHHHHHHHhccC--
Q 003466 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--------FPENV-YEPALECAELLLQGVG-- 457 (818)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~--------~~~~~-~~~~~eLae~L~~~~~-- 457 (818)
.||.++| .+.++..|...+.++ ++.+.+++.++.....+.. ...+. .....+|.++|+++++
T Consensus 30 ~y~~~~~----p~~~i~lg~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 102 (435)
T 3piu_A 30 PYHEVHN----TNGIIQMGLAENQLC---FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEI 102 (435)
T ss_dssp BCBTTTB----TTSBEECSSCCCCSS---HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcccC----CCCeEEecccccccc---HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHh
Confidence 4778888 776666666565555 7889999988876543210 00011 1112455555555443
Q ss_pred ------CCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 458 ------KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 458 ------~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
-. .+.++|+++|++|++.+++.+. ..| ..|++.+.+||+........+|...
T Consensus 103 ~~~~~~~~-~~~v~~~~gg~~a~~~~~~~l~-----~~g----------------d~vl~~~p~~~~~~~~~~~~~g~~~ 160 (435)
T 3piu_A 103 RGNKVTFD-PNHLVLTAGATSANETFIFCLA-----DPG----------------EAVLIPTPYYPGFDRDLKWRTGVEI 160 (435)
T ss_dssp TTTSSCCC-GGGEEEEEHHHHHHHHHHHHHC-----CTT----------------CEEEEEESCCTTHHHHTTTTTCCEE
T ss_pred hCCCCCCC-HHHEEEcCChHHHHHHHHHHhc-----CCC----------------CeEEECCCccccHHHHHHHhcCCEE
Confidence 11 3689999999999999999871 222 3688888887765432221232211
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
. .++....- + |. -| .+.+++.+++.
T Consensus 161 ~----------------------------~~~~~~~~--------~--~~---------~d--------~~~l~~~l~~~ 185 (435)
T 3piu_A 161 V----------------------------PIHCTSSN--------G--FQ---------IT--------ETALEEAYQEA 185 (435)
T ss_dssp E----------------------------EEECCGGG--------T--SC---------CC--------HHHHHHHHHHH
T ss_pred E----------------------------EeeCCCcc--------C--Cc---------CC--------HHHHHHHHHHH
Confidence 0 01100000 0 00 01 14455555421
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccC----CC-----
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLG----CV----- 681 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~g----v~----- 681 (818)
. ....++++|++++. ++..|.+. +.+.+++|.++|++||++||+||+++++++.|+.+.. ..++ +.
T Consensus 186 ~--~~~~~~~~v~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 261 (435)
T 3piu_A 186 E--KRNLRVKGVLVTNP-SNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEV 261 (435)
T ss_dssp H--HTTCCEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CG
T ss_pred H--hcCCCeEEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCC
Confidence 0 12346888888876 78888755 6788999999999999999999999998788765432 2221 21
Q ss_pred Cc----EEEeccccc-CCccccceeec-chHHHhhccCC------hH--------------HHH--------------HH
Q 003466 682 PD----IACYGKLLT-GGVIPLAATLA-TNAVFDSFVGD------SK--------------LWD--------------LE 721 (818)
Q Consensus 682 PD----ivtlgKgLg-gGy~PlsAvl~-~~~i~~~l~~~------~~--------------~~~--------------~~ 721 (818)
+| +.+++|++| +| +++|++++ ++++.+.+... .. .+. +.
T Consensus 262 ~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T 3piu_A 262 WQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKK 340 (435)
T ss_dssp GGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 55 668999998 78 79999999 56666544211 10 000 11
Q ss_pred HHHHHHcCCCeeEEEeee-eEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHH
Q 003466 722 LIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPE 792 (818)
Q Consensus 722 l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~e 792 (818)
+.+.+++.+ +..+.+.| +++.+++.... .......+..+++.|+++ ||++.+. .+.+|+.++.. |++
T Consensus 341 l~~~L~~~g-~~~~~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e 416 (435)
T 3piu_A 341 LVSGLQKSG-ISCLNGNAGLFCWVDMRHLL--RSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PER 416 (435)
T ss_dssp HHHHHHTTT-CEECCCCSSSEEEEECGGGS--SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHH
T ss_pred HHHHHHhcC-CcccCCCeeEEEEEEccccc--ccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHH
Confidence 233344443 33344444 78888875431 111112456788888877 9999872 37899998765 999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003466 793 VCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 793 dId~~~~~l~~~l~~l~ 809 (818)
+|++++++|.++++++.
T Consensus 417 ~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 417 TLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987754
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=200.35 Aligned_cols=300 Identities=11% Similarity=0.018 Sum_probs=194.8
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCC-hhHHHHHHHHHhcc----CCC-CCC-cEE
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGV----GKG-WAS-RAY 465 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~----~~~-~l~-~v~ 465 (818)
+|+ ++|||.+|.. .+| . +|+|.+|+.+++++.... .+.. ....+|.+.|++++ |.+ ..+ .++
T Consensus 23 ~g~----~~idl~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~---~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~ 91 (376)
T 2dou_A 23 RGV----GLIDLSIGST--DLP-P-PEAPLKALAEALNDPTTY---GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREAL 91 (376)
T ss_dssp TTC----CCEECSSCCC--CCC-C-CHHHHHHHHHHTTCGGGS---SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEE
T ss_pred cCC----CEEeccCCCC--CCC-C-CHHHHHHHHHHHhCCCcC---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEE
Confidence 466 8999988754 566 4 799999999998753111 1222 23456666666654 532 113 899
Q ss_pred EeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCC
Q 003466 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (818)
Q Consensus 466 f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~ 545 (818)
|+++|++|++.+++.+ ...| .+|++.+.+||+....+.. .|...
T Consensus 92 ~~~g~~~a~~~~~~~l-----~~~g----------------d~vl~~~p~y~~~~~~~~~-~g~~~-------------- 135 (376)
T 2dou_A 92 ALIGSQEGLAHLLLAL-----TEPE----------------DLLLLPEVAYPSYFGAARV-ASLRT-------------- 135 (376)
T ss_dssp EESSHHHHHHHHHHHH-----CCTT----------------CEEEEESSCCHHHHHHHHH-TTCEE--------------
T ss_pred EcCCcHHHHHHHHHHh-----cCCC----------------CEEEECCCCcHhHHHHHHH-cCCEE--------------
Confidence 9999999999999876 1122 3799999999996543322 22110
Q ss_pred cccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 003466 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (818)
Q Consensus 546 ~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv 625 (818)
..++.++.+ ..|+ +.+++.+. .++++|++
T Consensus 136 --------------~~~~~~~~~-----------~~d~------------------~~l~~~l~--------~~~~~v~l 164 (376)
T 2dou_A 136 --------------FLIPLREDG-----------LADL------------------KAVPEGVW--------REAKVLLL 164 (376)
T ss_dssp --------------EEECBCTTS-----------SBCG------------------GGSCHHHH--------HHEEEEEE
T ss_pred --------------EEeeCCCCC-----------CCCH------------------HHHHHhhc--------cCceEEEE
Confidence 011111111 0111 22333443 24678887
Q ss_pred ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcc---cCCCCcEEEeccccc-CCccccce
Q 003466 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL---LGCVPDIACYGKLLT-GGVIPLAA 700 (818)
Q Consensus 626 EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~---~gv~PDivtlgKgLg-gGy~PlsA 700 (818)
+.. ++..|.+. |.+++++|.++|++||+++|+||++++|.+.|+.. .... ++...++.+++|.+| +| +++|+
T Consensus 165 ~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~ 241 (376)
T 2dou_A 165 NYP-NNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG-FRLGF 241 (376)
T ss_dssp CSS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG-GCCEE
T ss_pred CCC-CCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh-heeEE
Confidence 754 77778765 78999999999999999999999999987776432 2222 334455668999997 77 79999
Q ss_pred eecchHHHhhccCCh--------H--------HH-----------------HHHHHHHHHcCCCeeEEEe-eeeEEEEEE
Q 003466 701 TLATNAVFDSFVGDS--------K--------LW-----------------DLELIQQISSHRTVQRVVA-LGTLCAIEL 746 (818)
Q Consensus 701 vl~~~~i~~~l~~~~--------~--------~~-----------------~~~l~~~l~~~~~v~~vrg-~Gl~~~iel 746 (818)
+++++++++.+.... . .+ .+.+.+.++++ +..+.. .|+++.+++
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~ 319 (376)
T 2dou_A 242 ALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRL 319 (376)
T ss_dssp EEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEEC
T ss_pred EecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEEC
Confidence 999999887653211 0 00 01123334444 322233 356666776
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
... ..+..+++.|+++||++.++ .+.+|+.++. ++++|++++++|.+++
T Consensus 320 ~~~--------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 320 PEG--------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp CTT--------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred CCC--------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 432 11456888999999999873 3789999874 7899999999998764
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-19 Score=194.69 Aligned_cols=296 Identities=12% Similarity=0.051 Sum_probs=205.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+.++. +.++ . +|+|.+|+.++++..... .+..+...+|.++|+++++....+.++|+++|++|++.+++
T Consensus 31 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~~---~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 31 GLVKLDAME--NPYR-L-PPALRSELAARLGEVALN---RYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TCEECCSSC--CCCC-C-CHHHHHHHHHHHHHHHTT---CSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CeeEccCCC--CCCC-C-CHHHHHHHHHHhhhhhhh---cCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 789998864 3343 5 899999999998853221 12234467888999988864113689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.+ -+.| .+|++.+.+||+....+.. .|...
T Consensus 104 ~~-----~~~g----------------d~Vl~~~~~~~~~~~~~~~-~g~~~---------------------------- 133 (367)
T 3euc_A 104 AA-----ARPG----------------AKVMAPVPGFVMYAMSAQF-AGLEF---------------------------- 133 (367)
T ss_dssp HT-----CCTT----------------CEEEEEESCSCCSCHHHHT-TTCEE----------------------------
T ss_pred HH-----cCCC----------------CEEEEcCCCHHHHHHHHHH-cCCeE----------------------------
Confidence 76 1222 3789999999986533222 11110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..++....+ ..| .+.+++.+.. .++++|+++.. ++..|.+. +
T Consensus 134 ~~v~~~~~~-----------~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~-~ 175 (367)
T 3euc_A 134 VGVPLRADF-----------TLD------------------RGAMLAAMAE-------HQPAIVYLAYP-NNPTGNLF-D 175 (367)
T ss_dssp EEEECCTTS-----------CCC------------------HHHHHHHHHH-------HCCSEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC-----------CCC------------------HHHHHHHhhc-------cCCCEEEEcCC-CCCCCCCC-C
Confidence 011111000 011 2566777752 14567888775 88888876 7
Q ss_pred HHHHHHHHHHHHhc--CCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH-
Q 003466 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK- 716 (818)
Q Consensus 640 ~~fl~~LreLc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~- 716 (818)
.+.+++|.++|++| |+++|+||++++|+..+.......++...++.+++|...+| +++|++++++++++.+.....
T Consensus 176 ~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~~~~~ 254 (367)
T 3euc_A 176 AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAG-IRLGYVAGDPQWLEQLDKVRPP 254 (367)
T ss_dssp HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCS-CCEEEEEECHHHHHHHGGGCCS
T ss_pred HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccc-cCceeeeeCHHHHHHHHHhCCC
Confidence 78899999999999 99999999999987666555555566667788999995567 799999999998876643211
Q ss_pred -----------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHH
Q 003466 717 -----------------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKL 767 (818)
Q Consensus 717 -----------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l 767 (818)
...+.+.+.+++++.+......|.++.+.+. + +..+.+.|
T Consensus 255 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~-~----------~~~l~~~l 323 (367)
T 3euc_A 255 YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLARVP-D----------AAQTFDRL 323 (367)
T ss_dssp SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEECS-C----------HHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEECC-C----------HHHHHHHH
Confidence 0112344556667666555566777777664 2 45678889
Q ss_pred HhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 768 REDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 768 ~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.++||++++. .+.+|+... |++|+++++++|++++
T Consensus 324 ~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 324 LARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp HTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 9999999873 378999965 8999999999998875
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=199.15 Aligned_cols=300 Identities=12% Similarity=0.085 Sum_probs=195.6
Q ss_pred eCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCCh
Q 003466 391 QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470 (818)
Q Consensus 391 D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SG 470 (818)
+.+|+ ++|||.++. ..+| . +|++.+|+.+++++...+. .+...++.++|+++++.+ .+.++|+++|
T Consensus 20 ~~~~~----~~idl~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~-----~~~~~~l~~~la~~~~~~-~~~v~~~~g~ 85 (364)
T 1lc5_A 20 GISPD----QLLDFSANI--NPLG-M-PVSVKRALIDNLDCIERYP-----DADYFHLHQALARHHQVP-ASWILAGNGE 85 (364)
T ss_dssp TSCGG----GSEECSSCC--CTTC-C-CHHHHHHHHHTGGGGGSCC-----CTTCHHHHHHHHHHHTSC-GGGEEEESSH
T ss_pred CCCcc----ceEEecccc--CCCC-C-CHHHHHHHHHHHHHhhcCC-----CCCHHHHHHHHHHHHCcC-HHHEEECCCH
Confidence 45788 999998876 3477 6 8999999999987633221 223467888888877632 3689999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++|++.+++.+ . | .+|++...+||+....+... |...
T Consensus 86 ~~al~~~~~~~----~---g----------------d~vl~~~p~y~~~~~~~~~~-g~~~------------------- 122 (364)
T 1lc5_A 86 TESIFTVASGL----K---P----------------RRAMIVTPGFAEYGRALAQS-GCEI------------------- 122 (364)
T ss_dssp HHHHHHHHHHH----C---C----------------SEEEEEESCCTHHHHHHHHT-TCEE-------------------
T ss_pred HHHHHHHHHHc----C---C----------------CeEEEeCCCcHHHHHHHHHc-CCeE-------------------
Confidence 99999999875 1 1 37999999999965433222 2110
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEcccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVV 629 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAV-IvEPV~ 629 (818)
..++.... ++ +.. .+.+.+.+. .++++| +.+|
T Consensus 123 ---------~~v~~~~~-------------~~----~~~-----------l~~~~~~~~--------~~~~~v~i~~p-- 155 (364)
T 1lc5_A 123 ---------RRWSLREA-------------DG----WQL-----------TDAILEALT--------PDLDCLFLCTP-- 155 (364)
T ss_dssp ---------EEEECCGG-------------GT----TCC-----------CTTHHHHCC--------TTCCEEEEESS--
T ss_pred ---------EEEeCCcc-------------cc----cch-----------hHHHHHhcc--------CCCCEEEEeCC--
Confidence 00111000 00 000 011111221 234444 4566
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch--hcccCCCCcEEEeccccc-CCccccceee-cch
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPDIACYGKLLT-GGVIPLAATL-ATN 705 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a--~e~~gv~PDivtlgKgLg-gGy~PlsAvl-~~~ 705 (818)
++..|.+. |.+++++|.++|++||+++|+||++++|++.|.... .+.++....+.+++|.+| +| +++|+++ +++
T Consensus 156 ~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~ 233 (364)
T 1lc5_A 156 NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPG-LRLGYLVNSDD 233 (364)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTT-TCCEEEECCCH
T ss_pred CCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCc-cceEEEEECCH
Confidence 56677764 889999999999999999999999998866543221 122344444568999998 78 7999999 999
Q ss_pred HHHhhccCC--h----H--------------HH----------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC
Q 003466 706 AVFDSFVGD--S----K--------------LW----------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 755 (818)
Q Consensus 706 ~i~~~l~~~--~----~--------------~~----------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~ 755 (818)
++++.+... . . .+ .+.+.+.+++++.+..+...|.++.+++..+
T Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~------ 307 (364)
T 1lc5_A 234 AAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCERE------ 307 (364)
T ss_dssp HHHHHHHHHSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEEEEESCT------
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCeEEEEECCCc------
Confidence 987755321 0 0 00 1224455666666655566788877776432
Q ss_pred chHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 756 ~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+..+++.|.++||++.+. .+.+|+... +++|+++++++|++.++++.
T Consensus 308 ----~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 308 ----DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp ----TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred ----HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence 224778899999999873 368999853 58899999999998876653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-22 Score=219.31 Aligned_cols=322 Identities=11% Similarity=0.071 Sum_probs=201.0
Q ss_pred cCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CC
Q 003466 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WA 461 (818)
Q Consensus 383 ~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l 461 (818)
+|.++++||.+|+ .+++|||.+|.. .++ . +|+|.+|+.+++++..+.. .....+...++++++.+..+.+ ..
T Consensus 17 ~~~g~~~~d~~g~--~~~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~la~~l~~~~g~~~~~ 89 (392)
T 3b1d_A 17 LSHHTYKWKETET--DPQLLPAWIADM--DFE-V-MPEVKQAIHDYAEQLVYGY-TYASDELLQAVLDWEKSEHQYSFDK 89 (392)
Confidence 3455689999986 448999977542 344 3 7999999999987532211 1113445555555555543310 13
Q ss_pred CcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcc
Q 003466 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY 541 (818)
Q Consensus 462 ~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~ 541 (818)
+.++++++|++|++.+++.+. ..| .+|++...+||+....+... |...
T Consensus 90 ~~v~~~~g~~~a~~~~~~~~~-----~~g----------------d~vl~~~p~~~~~~~~~~~~-g~~~---------- 137 (392)
T 3b1d_A 90 EDIVFVEGVVPAISIAIQAFT-----KEG----------------EAVLINSPVYPPFARSVRLN-NRKL---------- 137 (392)
Confidence 689999999999999999772 111 37899999999866433222 1110
Q ss_pred cCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 003466 542 SGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (818)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iA 621 (818)
+.+| +++.+..|. . ..+.+++.+. ..+++
T Consensus 138 --------------------~~~~--------------~~~~~g~~~-------~---d~~~l~~~l~-------~~~~~ 166 (392)
T 3b1d_A 138 --------------------VSNS--------------LKEENGLFQ-------I---DFEQLENDIV-------ENDVK 166 (392)
Confidence 0011 000000000 0 0144555553 13456
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc----cchhcc--cCCCCcEEEeccccc-CC
Q 003466 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL--LGCVPDIACYGKLLT-GG 694 (818)
Q Consensus 622 AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~----~~a~e~--~gv~PDivtlgKgLg-gG 694 (818)
+|+++.. ++..|.+. +.+++++|.++|++||+++|+||++++|++.|. ++.... ++..+++.+++|++| +|
T Consensus 167 ~v~~~~~-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 244 (392)
T 3b1d_A 167 LYLLCNP-HNPGGRVW-EREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAG 244 (392)
Confidence 7777664 77788764 778999999999999999999999999988774 233322 456677889999998 78
Q ss_pred ccccceeecch-HHHhhccCChH-----------------HHH-----------------HHHHHHHHc-CCCeeEEEee
Q 003466 695 VIPLAATLATN-AVFDSFVGDSK-----------------LWD-----------------LELIQQISS-HRTVQRVVAL 738 (818)
Q Consensus 695 y~PlsAvl~~~-~i~~~l~~~~~-----------------~~~-----------------~~l~~~l~~-~~~v~~vrg~ 738 (818)
+++|++++++ ++++.+..... .+. +.+.+.+++ ++.+..++..
T Consensus 245 -~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 323 (392)
T 3b1d_A 245 -TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQ 323 (392)
Confidence 7999999875 47765532110 111 011222333 3344445555
Q ss_pred eeEEE-EEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 739 GTLCA-IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 739 Gl~~~-iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
|.++. +++.... ..+..+++.|+ ++||++.|+ .+.+|+... .++++|++++++|.++++
T Consensus 324 ~~~~~~i~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 324 GTYLIWLDFSDYG-------LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA--APKSLVEEICKRIVCCLP 391 (392)
Confidence 65554 5553210 12456788887 789999873 256787754 468999999999988764
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-19 Score=191.65 Aligned_cols=303 Identities=9% Similarity=0.024 Sum_probs=205.8
Q ss_pred EEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEe
Q 003466 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467 (818)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~ 467 (818)
++++.+|+ ++||+.++. +.++ . +|+|.+|+.++++.... +..+...+|.++|+++++.. .+.++++
T Consensus 9 ~~~~~~~~----~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~-~~~i~~~ 74 (354)
T 3ly1_A 9 AFTAPSTD----NPIRINFNE--NPLG-M-SPKAQAAARDAVVKANR-----YAKNEILMLGNKLAAHHQVE-APSILLT 74 (354)
T ss_dssp CCCCCCSS----SCEECSSCC--CSSC-C-CHHHHHHHHHTGGGTTS-----CCHHHHHHHHHHHHHHTTSC-GGGEEEE
T ss_pred cccCCCCC----ceEEccCCC--CCCC-C-CHHHHHHHHHHHhhCcC-----CCCCchHHHHHHHHHHhCCC-hHHEEEe
Confidence 46778899 999999864 3444 5 89999999999885322 23456789999999988743 3689999
Q ss_pred CChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcc
Q 003466 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (818)
Q Consensus 468 ~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~ 547 (818)
++|++|++.+++.. .+.| .+|++...+||+....+. ..|...
T Consensus 75 ~g~~~a~~~~~~~l-----~~~g----------------d~vl~~~~~~~~~~~~~~-~~g~~~---------------- 116 (354)
T 3ly1_A 75 AGSSEGIRAAIEAY-----ASLE----------------AQLVIPELTYGDGEHFAK-IAGMKV---------------- 116 (354)
T ss_dssp SHHHHHHHHHHHHH-----CCTT----------------CEEEEESSSCTHHHHHHH-HTTCEE----------------
T ss_pred CChHHHHHHHHHHH-----hCCC----------------CeEEECCCCchHHHHHHH-HcCCEE----------------
Confidence 99999999999976 1222 378888888887543222 222110
Q ss_pred cCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 003466 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (818)
Q Consensus 548 ~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP 627 (818)
..++....+ -.| .+.+++.+.+ ..++.+|+++.
T Consensus 117 ------------~~~~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~l~~ 149 (354)
T 3ly1_A 117 ------------TKVKMLDNW-----------AFD------------------IEGLKAAVAA------YSGPSIVYLVN 149 (354)
T ss_dssp ------------EEECCCTTS-----------CCC------------------HHHHHHHHHT------CSSCEEEEEES
T ss_pred ------------EEecCCCCC-----------CCC------------------HHHHHHHhcc------CCCCCEEEEeC
Confidence 011111000 001 2567777752 13567777776
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch----hccc-CCCCcEEEeccccc-CCcccccee
Q 003466 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT----ADLL-GCVPDIACYGKLLT-GGVIPLAAT 701 (818)
Q Consensus 628 V~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a----~e~~-gv~PDivtlgKgLg-gGy~PlsAv 701 (818)
. ++..|.+. |.+.+++|.++| +||+++|+||++++|+..|.... ...+ +....+.+++|.+| .| +++|++
T Consensus 150 p-~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~ 225 (354)
T 3ly1_A 150 P-NNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG-MRVGYA 225 (354)
T ss_dssp S-CTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG-GCCEEE
T ss_pred C-CCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh-hhheee
Confidence 5 78788777 667788888888 79999999999999887775321 1222 44445568999998 77 799999
Q ss_pred ecchHHHhhccCChH------------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcc
Q 003466 702 LATNAVFDSFVGDSK------------------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 751 (818)
Q Consensus 702 l~~~~i~~~l~~~~~------------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~ 751 (818)
++++++++.+..... ...+.+.+.+++++ +..+.+.|.++.+++..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~-- 302 (354)
T 3ly1_A 226 VAHPTVIALMGRYVAGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDLK-LPYLPSEGNFVFHQLVVP-- 302 (354)
T ss_dssp ECCHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCCSSEEEEECSSC--
T ss_pred ecCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeECCCCceEEEEECCCC--
Confidence 999998887653211 01112334444442 333456777777776532
Q ss_pred cCCCchHHHHHHHHHHHhCCceEe----ecCCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 752 NAGYGSLYAASLLKKLREDGVYMR----PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 752 ~~~~~~~~a~~~~~~l~e~Gvlv~----p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+..+.+.|.++||++. ...+.+|++.. +++|+++++++|++++++
T Consensus 303 --------~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 303 --------LKDYQTHMADAGVLIGRAFPPADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp --------HHHHHHHHHHTTEECCCCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHCCEEEeecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 4568889999999987 12478999864 789999999999988753
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=200.84 Aligned_cols=316 Identities=12% Similarity=0.076 Sum_probs=202.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc----cccCCCCCChhHHHHHHHHHhccC---CCCCCcEEEeCChhH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~~---~~~l~~v~f~~SGse 472 (818)
.+|||.+|..+ ..||. +|+|.+|+.+++++.. .+....+..+...++++.+.+..+ .. .+.++++++|++
T Consensus 44 ~~idl~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-~~~v~~t~G~~~ 120 (425)
T 1vp4_A 44 DAISFGGGVPD-PETFP-RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD-EDNLIFTVGSQQ 120 (425)
T ss_dssp TCEECCCCSCC-GGGSC-HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC-GGGEEEEEHHHH
T ss_pred CceeCCCCCCC-cccCC-HHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC-cccEEEeccHHH
Confidence 79999988764 45888 9999999999987632 111111234555666666654324 22 368999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
|++.+++.. ...| .+|++.+.+||+....+.. .|..
T Consensus 121 al~~~~~~l-----~~~g----------------d~Vl~~~p~y~~~~~~~~~-~g~~---------------------- 156 (425)
T 1vp4_A 121 ALDLIGKLF-----LDDE----------------SYCVLDDPAYLGAINAFRQ-YLAN---------------------- 156 (425)
T ss_dssp HHHHHHHHH-----CCTT----------------CEEEEEESCCHHHHHHHHT-TTCE----------------------
T ss_pred HHHHHHHHh-----CCCC----------------CEEEEeCCCcHHHHHHHHH-cCCE----------------------
Confidence 999999976 1222 3799999999986533222 2211
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
.+.+|... + ..| .+.+++.+.+.....++.++++|++.|..++.
T Consensus 157 --------~~~v~~~~--------~--~~d------------------~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~np 200 (425)
T 1vp4_A 157 --------FVVVPLED--------D--GMD------------------LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200 (425)
T ss_dssp --------EEEEEEET--------T--EEC------------------HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred --------EEEeccCC--------C--CCC------------------HHHHHHHHHhhhhcccCCCceEEEECCCCCCC
Confidence 00111000 0 011 14455555420000012367887544433777
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccCCC---CcEEEecccccCCccccceeecchHHH
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCV---PDIACYGKLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~---PDivtlgKgLggGy~PlsAvl~~~~i~ 708 (818)
.|.+. |.+++++|.++|++||+++|+||++++|.+.|+. .....++.. ..+.+++|.+++| +++|+++++++++
T Consensus 201 tG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~ 278 (425)
T 1vp4_A 201 AGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFI 278 (425)
T ss_dssp TCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHH
T ss_pred CCCcC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccc-cceEEEeeCHHHH
Confidence 78765 7899999999999999999999999998777763 223223222 2355899999988 7999999999988
Q ss_pred hhccCChH----------------HHH-------------------HHHHHHHHcC-C---CeeEE-EeeeeEEEEEEec
Q 003466 709 DSFVGDSK----------------LWD-------------------LELIQQISSH-R---TVQRV-VALGTLCAIELQA 748 (818)
Q Consensus 709 ~~l~~~~~----------------~~~-------------------~~l~~~l~~~-~---~v~~v-rg~Gl~~~iel~~ 748 (818)
+.+..... .+. +.+.+.++++ + .+..+ ...|.++.+++..
T Consensus 279 ~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~ 358 (425)
T 1vp4_A 279 RKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPE 358 (425)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCT
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCC
Confidence 76532110 110 1123334432 3 23322 3457777777753
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.. .+..+++.|+++||++.++ .+.+|+.++.. +++++++++++|.++++++.
T Consensus 359 ~~--------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~ 419 (425)
T 1vp4_A 359 GF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYG 419 (425)
T ss_dssp TC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CC--------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 20 1235788899899999872 36899999874 89999999999999987764
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=198.02 Aligned_cols=314 Identities=11% Similarity=0.095 Sum_probs=205.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc----cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e 475 (818)
.+|||.+|.... -++. ++++.+|+.+++++.+ .+....+..+....+++.+.+..+.+..+.++++++|++|++
T Consensus 77 ~~i~l~~g~p~~-~~~p-~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~ 154 (448)
T 3aow_A 77 DIISLAGGLPNP-KTFP-KEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALD 154 (448)
T ss_dssp SSEECCCCCCCG-GGSC-HHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHH
T ss_pred CcEeCCCCCCCc-hhCC-HHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHH
Confidence 789999887654 3577 8999999999987642 111112233445555555544335311368999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.++++.. ..| ..|++.+.+|||..... ...|..
T Consensus 155 ~~~~~l~-----~~G----------------d~Vlv~~p~y~~~~~~~-~~~g~~------------------------- 187 (448)
T 3aow_A 155 LIGRVFL-----NPG----------------DIVVVEAPTYLAALQAF-NFYEPQ------------------------- 187 (448)
T ss_dssp HHHHHHC-----CTT----------------CEEEEEESCCHHHHHHH-HTTCCE-------------------------
T ss_pred HHHHHHc-----CCC----------------CEEEEeCCChHHHHHHH-HHcCCE-------------------------
Confidence 9999861 222 37999999999855332 222211
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+.+|... + -.| .+.|++.+.... ....++++|++.|..++..|.
T Consensus 188 -----~~~v~~~~--------~--g~d------------------~~~L~~~l~~~~--~~~~~~k~v~~~~~~~NPtG~ 232 (448)
T 3aow_A 188 -----YIQIPLDD--------E--GMK------------------VEILEEKLKELK--SQGKKVKVVYTVPTFQNPAGV 232 (448)
T ss_dssp -----EEEEEEET--------T--EEC------------------HHHHHHHHHHHH--HTTCCEEEEEECCSSCTTTCC
T ss_pred -----EEEeccCC--------C--CCC------------------HHHHHHHHhhhh--ccCCCCeEEEECCCCCCCcCC
Confidence 01111000 0 011 245666664100 012367888777765777787
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc----chhcccCCCCcEEEecccccCCccccceeecchHHHhhc
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~----~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l 711 (818)
+. +.+++++|.++|++||+++|+||++++|...|+. ...+..+...++.+|||.++.| +++|++++++++++.+
T Consensus 233 ~~-~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~l 310 (448)
T 3aow_A 233 TM-NEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPG-FRIGWMVGDPGIIRKM 310 (448)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGG-GCCEEEEECHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcccc-ccEEEEEeCHHHHHHH
Confidence 65 8899999999999999999999999988766652 2333345556788999999988 7999999999988765
Q ss_pred cCChH----------------HHH-------------------HHHHHHHHc-CC-CeeEEEe-eeeEEEEEEecCcccC
Q 003466 712 VGDSK----------------LWD-------------------LELIQQISS-HR-TVQRVVA-LGTLCAIELQAAGCNA 753 (818)
Q Consensus 712 ~~~~~----------------~~~-------------------~~l~~~l~~-~~-~v~~vrg-~Gl~~~iel~~~~~~~ 753 (818)
..... .+. +.+.+.+++ .+ .+..++. .|+++.+.+...
T Consensus 311 ~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~---- 386 (448)
T 3aow_A 311 EIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDG---- 386 (448)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTT----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCC----
Confidence 32110 110 112333443 34 3443333 366677776432
Q ss_pred CCchHHHHHHHHHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
..+..+++.|+++||++.|+ .+.+|++++. .++++|++++++|.++++++
T Consensus 387 ----~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 387 ----IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp ----CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 12457889999999999873 3689999886 48999999999999998765
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=193.05 Aligned_cols=312 Identities=8% Similarity=0.005 Sum_probs=203.2
Q ss_pred EEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC--CCC-cEE
Q 003466 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WAS-RAY 465 (818)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~--~l~-~v~ 465 (818)
++|.+|+ ++||+.+|. ..++ . +|.|.+|+.++++....+....+..+...++++.|.+..+.. ..+ .++
T Consensus 24 ~~~~~g~----~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~ 95 (396)
T 3jtx_A 24 ISAPEGM----EAVPLHIGE--PKHP-T-PKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEIL 95 (396)
T ss_dssp CCCCTTC----CCEECSCCS--CCSC-C-CHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEE
T ss_pred hhhccCC----CeEEeCCcC--CCCC-C-CHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEE
Confidence 5678899 999999876 3344 4 899999999998765443333345677888888887765421 135 899
Q ss_pred EeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCC
Q 003466 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (818)
Q Consensus 466 f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~ 545 (818)
++++|++|++.+++.+. ..|. ..++..|++...+||+....+.. .|...
T Consensus 96 ~t~g~~~al~~~~~~~~-----~~g~-----------~~~~d~vl~~~p~~~~~~~~~~~-~g~~~-------------- 144 (396)
T 3jtx_A 96 PVLGSREALFSFVQTVL-----NPVS-----------DGIKPAIVSPNPFYQIYEGATLL-GGGEI-------------- 144 (396)
T ss_dssp EESSHHHHHHHHHHHHC-----CC--------------CCCCEEEEEESCCHHHHHHHHH-TTCEE--------------
T ss_pred EcCCcHHHHHHHHHHHh-----CCCC-----------ccCCCEEEEcCCCcHhHHHHHHH-cCCEE--------------
Confidence 99999999999999871 1110 00125799999999986543222 22110
Q ss_pred cccCCCcccccCcceeecCc-chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 003466 546 LFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (818)
Q Consensus 546 ~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI 624 (818)
..++.+ +.+ ..|+ +.+++.+. .++.+|+
T Consensus 145 --------------~~v~~~~~g~-----------~~d~------------------~~l~~~~~--------~~~~~v~ 173 (396)
T 3jtx_A 145 --------------HFANCPAPSF-----------NPDW------------------RSISEEVW--------KRTKLVF 173 (396)
T ss_dssp --------------EEEECCTTTC-----------CCCG------------------GGSCHHHH--------HTEEEEE
T ss_pred --------------EEeecCCCCC-----------ccCH------------------HHHHHhhc--------cCcEEEE
Confidence 011110 000 0011 23444453 1466777
Q ss_pred EccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC-ccchhc--------ccCCCCcEEEeccccc-CC
Q 003466 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTAD--------LLGCVPDIACYGKLLT-GG 694 (818)
Q Consensus 625 vEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG-~~~a~e--------~~gv~PDivtlgKgLg-gG 694 (818)
++.. ++..|.+. |.+.+++|.++|++||+++|+||++++|.+.| ...... .++..+++.++||+++ .|
T Consensus 174 l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (396)
T 3jtx_A 174 VCSP-NNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPG 251 (396)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGG
T ss_pred EECC-CCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcc
Confidence 6654 78888866 67779999999999999999999999998888 333322 1456677889999876 56
Q ss_pred ccccceeecchHHHhhccCChH----------------HH----------------HHHHHHHHHcCCCeeEEEeeeeEE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK----------------LW----------------DLELIQQISSHRTVQRVVALGTLC 742 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~----------------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~ 742 (818)
+++|++++++++++.+..... .+ .+.+.+.++.+..+... ..|.++
T Consensus 252 -~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~ 329 (396)
T 3jtx_A 252 -LRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFDVKLP-DASFYI 329 (396)
T ss_dssp -GCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCC-SSSSEE
T ss_pred -cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCC-CeeEEE
Confidence 799999999998876642110 00 01123334333112212 236677
Q ss_pred EEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 743 AIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 743 ~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+++... .+..+++.|+ ++||++.|+ .+.+|+.+.. ++++|++++++|.+++
T Consensus 330 ~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 330 WLKVPDG---------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp EEECTTS---------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred EEECCCC---------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 7776531 1456777886 569999872 2789998765 8999999999998764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=192.13 Aligned_cols=310 Identities=11% Similarity=0.027 Sum_probs=201.2
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCCh
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SG 470 (818)
+|+ ++||+.+|.. .+| . +|++.+|+.+++++.. .+....+..+...++++.+.+..+.+ ..+.++++++|
T Consensus 28 ~g~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 99 (388)
T 1j32_A 28 EGI----DVCSFSAGEP--DFN-T-PKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG 99 (388)
T ss_dssp TTC----CCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred cCC----CEEECCCCCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCH
Confidence 567 8999988754 455 4 8999999999986521 11111223455666666666543311 13689999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++|++.+++.+. ..| .+|++.+.+||+.... +...|...
T Consensus 100 ~~a~~~~~~~~~-----~~g----------------d~vl~~~~~~~~~~~~-~~~~g~~~------------------- 138 (388)
T 1j32_A 100 KQSIFNLMLAMI-----EPG----------------DEVIIPAPFWVSYPEM-VKLAEGTP------------------- 138 (388)
T ss_dssp HHHHHHHHHHHC-----CTT----------------CEEEEESSCCTHHHHH-HHHTTCEE-------------------
T ss_pred HHHHHHHHHHhc-----CCC----------------CEEEEcCCCChhHHHH-HHHcCCEE-------------------
Confidence 999999999761 122 3799999999985432 22222110
Q ss_pred CcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~ 629 (818)
..++..... .| .| .+.+++.+. .++++|++++.
T Consensus 139 ---------~~v~~~~~~----------~~~~d------------------~~~l~~~l~--------~~~~~v~~~~p- 172 (388)
T 1j32_A 139 ---------VILPTTVET----------QFKVS------------------PEQIRQAIT--------PKTKLLVFNTP- 172 (388)
T ss_dssp ---------EEECCCGGG----------TTCCC------------------HHHHHHHCC--------TTEEEEEEESS-
T ss_pred ---------EEecCCccc----------CCCCC------------------HHHHHHhcC--------cCceEEEEeCC-
Confidence 011111000 00 01 255666664 25788888886
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc----chhc--ccCCCCcEEEeccccc-CCccccceee
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTAD--LLGCVPDIACYGKLLT-GGVIPLAATL 702 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~----~a~e--~~gv~PDivtlgKgLg-gGy~PlsAvl 702 (818)
++..|.+. |++.+++|.++|++||+++|+||++++|.+.|.. +... .++..+++.+++|.+| .| +++|+++
T Consensus 173 ~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~ 250 (388)
T 1j32_A 173 SNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG-WRVGFLA 250 (388)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEE
T ss_pred CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcc-cceEEEE
Confidence 78888775 7899999999999999999999999998776642 2222 1456677889999998 67 7999999
Q ss_pred cchHHHhhccCCh--------H--------HH-----------------HHHHHHHHHcCCCeeEEEee-eeEEEEEEec
Q 003466 703 ATNAVFDSFVGDS--------K--------LW-----------------DLELIQQISSHRTVQRVVAL-GTLCAIELQA 748 (818)
Q Consensus 703 ~~~~i~~~l~~~~--------~--------~~-----------------~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~ 748 (818)
+++++++.+.... . .+ .+.+.+.+++++.+.-+... |.++.+.+..
T Consensus 251 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~ 330 (388)
T 1j32_A 251 GPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAK 330 (388)
T ss_dssp CCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGG
T ss_pred eCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCC
Confidence 9998876553210 0 00 11234455555443323333 3333333321
Q ss_pred CcccCCCchHHHHHHHHHHHh-CCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLRE-DGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.. ..+..+++.|++ +||++.++ .+.+|+.++ +++++|++++++|.++++++
T Consensus 331 ~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 331 TG-------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp GT-------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CC-------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 00 124568888886 79999874 378999986 68999999999999988654
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=191.03 Aligned_cols=290 Identities=10% Similarity=0.026 Sum_probs=196.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
++||+.++. +.++ . +|+|.+|+.++++.+... ..+...++.++|+++++.. .+.++|+++|++|++.+++
T Consensus 33 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y-----~~~~~~~lr~~la~~~~~~-~~~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 33 KITKLSSNE--NPLG-T-SKKVAAIQANSSVETEIY-----PDGWASSLRKEVADFYQLE-EEELIFTAGVDELIELLTR 102 (363)
T ss_dssp CCEECSSCS--CTTC-C-CHHHHHHHHTCBSCCCBC---------CHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEccCCC--CCCC-C-CHHHHHHHHHHHHHhhcC-----CCcchHHHHHHHHHHhCCC-hhhEEEeCCHHHHHHHHHH
Confidence 799998853 3455 4 899999999988754332 2334467888888877632 3689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... ..| .+|++.+.+||+....+.. .|...
T Consensus 103 ~~~-----~~g----------------d~vl~~~~~~~~~~~~~~~-~g~~~---------------------------- 132 (363)
T 3ffh_A 103 VLL-----DTT----------------TNTVMATPTFVQYRQNALI-EGAEV---------------------------- 132 (363)
T ss_dssp HHC-----STT----------------CEEEEEESSCHHHHHHHHH-HTCEE----------------------------
T ss_pred HHc-----cCC----------------CEEEEcCCChHHHHHHHHH-cCCEE----------------------------
Confidence 761 122 3789999999874433222 22110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..++.+..+ ..| .+.+++.+. .++++|+++.. ++..|.+. |
T Consensus 133 ~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~-~ 173 (363)
T 3ffh_A 133 REIPLLQDG-----------EHD------------------LEGMLNAID--------EKTTIVWICNP-NNPTGNYI-E 173 (363)
T ss_dssp EEEECCTTS-----------CCC------------------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC-----------CcC------------------HHHHHHhcc--------cCCCEEEEeCC-CCCcCCCc-C
Confidence 011111000 001 255666663 35778888876 88888876 5
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc----EEEeccccc-CCccccceeecchHHHhhccCC
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD----ivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~ 714 (818)
.+.+.++.+.|++ |+++|+||++++|++ |++.........+| +.+++|.+| .| +++|++++++++++.+...
T Consensus 174 ~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~ 250 (363)
T 3ffh_A 174 LADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIV 250 (363)
T ss_dssp HHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCch-hceeeeecCHHHHHHHHHh
Confidence 6666666666666 999999999999887 76554444433455 568999998 77 7999999999998765432
Q ss_pred hH--------------H----------------HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHH
Q 003466 715 SK--------------L----------------WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL 764 (818)
Q Consensus 715 ~~--------------~----------------~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~ 764 (818)
.. . ..+.+.+.+++++.+..+...|.++.+.+..+ +..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~ 320 (363)
T 3ffh_A 251 RPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVLIDLGIE----------AGTIF 320 (363)
T ss_dssp CCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEEEECSSC----------HHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEEEECCCC----------HHHHH
Confidence 11 0 11223445566455555567788877776432 45688
Q ss_pred HHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 765 KKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 765 ~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
+.|.++||+++++ ++.+|+.++ |++|+++++++|+++
T Consensus 321 ~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 321 SYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp HHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 8999999999983 378999976 899999999999875
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-19 Score=197.07 Aligned_cols=315 Identities=10% Similarity=0.033 Sum_probs=194.3
Q ss_pred CCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC--CCCCChhHHHHHHHHHhccCCC-CC-CcEEEe
Q 003466 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-WA-SRAYFS 467 (818)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~--~~~~~~~~~eLae~L~~~~~~~-~l-~~v~f~ 467 (818)
.+|+ ++|||.+|.. .+| . +|.|.+|+.+++++.....+ ..+..+....+++.+.+..+.+ .. +.++++
T Consensus 34 ~~g~----~~idl~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t 105 (412)
T 2x5d_A 34 RRGE----DIIDLSMGNP--DGP-T-PPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVT 105 (412)
T ss_dssp HTTC----CCEECSSCCC--CSC-C-CHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred hcCC----CEEecCCCCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEc
Confidence 3577 8999998763 566 6 89999999999876421111 1123344455555554433521 12 489999
Q ss_pred CChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcc
Q 003466 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (818)
Q Consensus 468 ~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~ 547 (818)
++|++|++.+++.+ ...| .+|++.+.+||+....+.. .|...
T Consensus 106 ~g~~~a~~~~~~~~-----~~~g----------------d~Vl~~~p~~~~~~~~~~~-~g~~~---------------- 147 (412)
T 2x5d_A 106 IGSKEGLAHLMLAT-----LDHG----------------DTILVPNPSYPIHIYGAVI-AGAQV---------------- 147 (412)
T ss_dssp SCHHHHHHHHHHHH-----CCTT----------------CEEEEEESCCHHHHHHHHH-HTCEE----------------
T ss_pred CChHHHHHHHHHHh-----CCCC----------------CEEEEcCCCchhHHHHHHH-cCCEE----------------
Confidence 99999999999976 1222 3799999999986543322 22110
Q ss_pred cCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 003466 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (818)
Q Consensus 548 ~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP 627 (818)
+.+| +++ + .... ...+.+++.+. .++++|++..
T Consensus 148 --------------~~~~--------------~~~---------~-~~~~-~d~~~l~~~i~--------~~~~~v~l~~ 180 (412)
T 2x5d_A 148 --------------RSVP--------------LVP---------G-IDFF-NELERAIRESI--------PKPRMMILGF 180 (412)
T ss_dssp --------------EEEE--------------CST---------T-SCHH-HHHHHHHHTEE--------SCCSEEEEES
T ss_pred --------------EEee--------------cCC---------c-cCCC-CCHHHHHHhcc--------cCceEEEECC
Confidence 0011 000 0 0000 00245665553 2445566643
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcc----cCCCCcEEEeccccc-CCcccccee
Q 003466 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL----LGCVPDIACYGKLLT-GGVIPLAAT 701 (818)
Q Consensus 628 V~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~----~gv~PDivtlgKgLg-gGy~PlsAv 701 (818)
. ++..|.+. |.+++++|.++|++||+++|+||++++|.+.|+. ..... ++....+.+++|.+| +| +++|++
T Consensus 181 p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~ 257 (412)
T 2x5d_A 181 P-SNPTAQCV-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG-WRIGFM 257 (412)
T ss_dssp S-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT-SCCEEE
T ss_pred C-CCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc-cceEEE
Confidence 2 67677765 7899999999999999999999999998777752 12221 344445668999998 78 699999
Q ss_pred ecchHHHhhccCCh--------H--------HH-----------------HHHHHHHHHcCCCeeEEEee-eeEEEEEEe
Q 003466 702 LATNAVFDSFVGDS--------K--------LW-----------------DLELIQQISSHRTVQRVVAL-GTLCAIELQ 747 (818)
Q Consensus 702 l~~~~i~~~l~~~~--------~--------~~-----------------~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~ 747 (818)
++++++++.+.... . .+ .+.+.+.+++++ +.-+... |+++.+++.
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~ 336 (412)
T 2x5d_A 258 VGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAG-WMVENPKASMYVWAKIP 336 (412)
T ss_dssp EECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCCSBSSEEEEECC
T ss_pred EcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCCeeeEEEEEcC
Confidence 99999887653211 0 00 011233344332 2222333 566667764
Q ss_pred cCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.. .....+..+++.|++ +||++.++ .+.+|+.++. ++++|++++++|.++++++..
T Consensus 337 ~~-----~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 337 EP-----YAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp TT-----TGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTC
T ss_pred Cc-----cCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCC
Confidence 22 000024568888875 69999873 3789999986 789999999999999987653
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=194.66 Aligned_cols=301 Identities=9% Similarity=0.015 Sum_probs=195.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~AL 478 (818)
++|||.++. ..++ . +|+|.+|+.+++.....+....+..+...++++.+.+..+.+ ..+.++|+++|++|++.++
T Consensus 24 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~ 99 (376)
T 3ezs_A 24 RGLDLGIGE--PQFE-T-PKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFP 99 (376)
T ss_dssp CCCBCSSCC--CCSC-C-CHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHH
T ss_pred CEEEeCCCC--CCCC-C-CHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHH
Confidence 589998865 3455 5 899999999998554433322334567778888887765521 1378999999999999999
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
+.+. .. .+..+|++...+||+....+.. .|...
T Consensus 100 ~~~~-----~~--------------~~gd~vl~~~p~~~~~~~~~~~-~g~~~--------------------------- 132 (376)
T 3ezs_A 100 SFVL-----FD--------------YQNPTIAYPNPFYQIYEGAAKF-IKAKS--------------------------- 132 (376)
T ss_dssp HHHT-----TT--------------CSSCEEEEEESCCTHHHHHHHH-TTCEE---------------------------
T ss_pred HHHc-----CC--------------CCCCEEEEecCCcHhHHHHHHH-cCCEE---------------------------
Confidence 9871 11 0024799999999985543222 21110
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
..++.... +. ++. .+++.+. .++.+|++... ++..|.+.
T Consensus 133 -~~~~~~~~-------------~~----~~~-------------~l~~~~~--------~~~~~v~~~~p-~nptG~~~- 171 (376)
T 3ezs_A 133 -LLMPLTKE-------------ND----FTP-------------SLNEKEL--------QEVDLVILNSP-NNPTGRTL- 171 (376)
T ss_dssp -EEEECCGG-------------GT----SCC-------------CCCHHHH--------HHCSEEEECSS-CTTTCCCC-
T ss_pred -EEcccCCC-------------CC----cch-------------hHHhhhc--------cCCCEEEEcCC-CCCcCCCC-
Confidence 00111000 00 000 1122232 13446666543 78888766
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhc---------ccCCCCcEEEeccccc-CCccccceeecchHHH
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD---------LLGCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e---------~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~ 708 (818)
|.+.+++|.++|++||+++|+||++++|.+.|...... .++...++.+++|.+| .| +++|+++++++++
T Consensus 172 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~ 250 (376)
T 3ezs_A 172 SLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLL 250 (376)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCcc-ceeEEEeeCHHHH
Confidence 78889999999999999999999999998888544332 3455666779999997 77 7999999999988
Q ss_pred hhccCCh--------H--------HH------H---HH---HHHHH-HcCCCeeEEEeeeeEEEEEEecCcccCCCchHH
Q 003466 709 DSFVGDS--------K--------LW------D---LE---LIQQI-SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLY 759 (818)
Q Consensus 709 ~~l~~~~--------~--------~~------~---~~---l~~~l-~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~ 759 (818)
+.+.... . .+ . +. ..+.+ +....+. ....|.++.+++. +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~-~---------- 318 (376)
T 3ezs_A 251 EKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFKNTL-IYPYSFYVYLPVQ-N---------- 318 (376)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHSTTCC-CCSBSSEEEEECS-C----------
T ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcceEEEEECC-C----------
Confidence 7664210 0 00 0 00 11111 1111222 4456777777664 2
Q ss_pred HHHHHHHHHh-CCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLRE-DGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 760 a~~~~~~l~e-~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+..+++.|++ +||++.|+ .+.+|+.++. |+++|++++++|.+++++
T Consensus 319 ~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 319 GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 4567888887 89999872 3789998873 899999999999988754
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=193.23 Aligned_cols=313 Identities=13% Similarity=0.082 Sum_probs=196.9
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCCh
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SG 470 (818)
+|+ ++||+.++.. .+| . +|++.+|+ +++++.. .+....+..+...++++.+....+.+ ..+.++++++|
T Consensus 41 ~g~----~~i~l~~~~~--~~~-~-~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 111 (409)
T 2gb3_A 41 RGV----RIHHLNIGQP--DLK-T-PEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGG 111 (409)
T ss_dssp TTC----EEEECSSCCC--CSC-C-CTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred cCC----CEEeccCCCC--CCC-C-CHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence 567 8999988654 455 4 78999999 8886532 11111223455566666665533211 13689999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++|++.+++.+. ..| .+|++.+.+||+.... +...|...
T Consensus 112 t~a~~~~~~~~~-----~~g----------------d~Vl~~~~~~~~~~~~-~~~~g~~~------------------- 150 (409)
T 2gb3_A 112 SEAILFSFAVIA-----NPG----------------DEILVLEPFYANYNAF-AKIAGVKL------------------- 150 (409)
T ss_dssp HHHHHHHHHHHC-----CTT----------------CEEEEEESCCTHHHHH-HHHHTCEE-------------------
T ss_pred HHHHHHHHHHhC-----CCC----------------CEEEEcCCCchhHHHH-HHHcCCEE-------------------
Confidence 999999999761 122 4799999999986532 22222210
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
..++.... ++ |.. .+.|++.+. .++++|+++.. +
T Consensus 151 ---------~~v~~~~~-------------~~----~~~-----------~~~l~~~l~--------~~~~~v~~~~p-~ 184 (409)
T 2gb3_A 151 ---------IPVTRRME-------------EG----FAI-----------PQNLESFIN--------ERTKGIVLSNP-C 184 (409)
T ss_dssp ---------EEEECCGG-------------GT----SCC-----------CTTGGGGCC--------TTEEEEEEESS-C
T ss_pred ---------EEeccCCC-------------CC----Ccc-----------HHHHHHhhC--------cCCeEEEECCC-C
Confidence 00110000 00 000 022333332 26788888876 7
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEE--Eeccccc-CCccccceeecch-
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLT-GGVIPLAATLATN- 705 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv--tlgKgLg-gGy~PlsAvl~~~- 705 (818)
+..|.+. |.+++++|.++|++||+++|+||++++|++.|+.... ..++ ..|++ +++|.+| +| +++|++++++
T Consensus 185 nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~ 261 (409)
T 2gb3_A 185 NPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACG-ARVGCLITRNE 261 (409)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCH
T ss_pred CCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCcc-ceEEEEEECcH
Confidence 8788765 7899999999999999999999999998777754433 2233 34765 7899998 67 6999999998
Q ss_pred HHHhhccC------C-hH--------HH-----------------HHHHHHHHHcCCCee-EEEeeeeEEEEEEecCccc
Q 003466 706 AVFDSFVG------D-SK--------LW-----------------DLELIQQISSHRTVQ-RVVALGTLCAIELQAAGCN 752 (818)
Q Consensus 706 ~i~~~l~~------~-~~--------~~-----------------~~~l~~~l~~~~~v~-~vrg~Gl~~~iel~~~~~~ 752 (818)
++++.+.. . .. .+ .+.+.+.+++++... .....|.++.+.+. .
T Consensus 262 ~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~--- 337 (409)
T 2gb3_A 262 ELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELP-V--- 337 (409)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECS-S---
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEEEEEeC-C---
Confidence 88765421 1 11 01 012233444443211 11223555555654 1
Q ss_pred CCCchHHHHHHHHHHHhC------CceEeec----------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 003466 753 AGYGSLYAASLLKKLRED------GVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLK 816 (818)
Q Consensus 753 ~~~~~~~a~~~~~~l~e~------Gvlv~p~----------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~~~~~ 816 (818)
..+..+++.|+++ ||++.+. .+.+|+.++ +++++|++++++|.++++++. ....
T Consensus 338 -----~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~---~~~~ 407 (409)
T 2gb3_A 338 -----EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFC---SSRI 407 (409)
T ss_dssp -----SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHH---C---
T ss_pred -----CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh---hccc
Confidence 1145688889887 9999873 468999988 899999999999999987764 3455
Q ss_pred cC
Q 003466 817 SC 818 (818)
Q Consensus 817 ~~ 818 (818)
+|
T Consensus 408 ~~ 409 (409)
T 2gb3_A 408 SC 409 (409)
T ss_dssp --
T ss_pred CC
Confidence 55
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=183.70 Aligned_cols=291 Identities=9% Similarity=-0.058 Sum_probs=193.2
Q ss_pred CCCCCHHHHHHHHHhhhhccccc-CCC-----CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhh
Q 003466 414 DATLQIELARDMGYTAARFGHVM-FPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487 (818)
Q Consensus 414 Gh~~hp~V~eAi~~q~~~~~~~~-~~~-----~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~ 487 (818)
|+. +|++.+|+.+++++..... ... ...+...++.++|+++++....+.++|+++|++|++.+++.+ +.+.-
T Consensus 33 ~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~-~~~~~ 110 (406)
T 1kmj_A 33 AQK-PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSW-GNSNV 110 (406)
T ss_dssp CCC-CHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHT-HHHHC
T ss_pred CCC-CHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHh-hhhcC
Confidence 577 9999999999998753111 000 124567889999999987411368999999999999999987 32211
Q ss_pred cccccccccCCCccccccceEEEEEcCCCCCCcccccc---ccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC
Q 003466 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME---AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (818)
Q Consensus 488 ~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als---~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~ 564 (818)
.. ..+|++.+.+|||....... ..|... ..++.
T Consensus 111 ~~----------------gd~vl~~~~~~~~~~~~~~~~~~~~g~~~----------------------------~~~~~ 146 (406)
T 1kmj_A 111 RA----------------GDNIIISQMEHHANIVPWQMLCARVGAEL----------------------------RVIPL 146 (406)
T ss_dssp CT----------------TCEEEEETTCCGGGTHHHHHHHHHHTCEE----------------------------EEECB
T ss_pred CC----------------CCEEEEecccchHHHHHHHHHHHhCCCEE----------------------------EEEec
Confidence 12 24799999999986533211 112110 01111
Q ss_pred cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHH
Q 003466 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (818)
Q Consensus 565 P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~ 644 (818)
+..+ ..|+ +.+++.+. .++++|+++++ ++..|.+.+ ++
T Consensus 147 ~~~~-----------~~d~------------------~~l~~~l~--------~~~~~v~~~~~-~nptG~~~~----l~ 184 (406)
T 1kmj_A 147 NPDG-----------TLQL------------------ETLPTLFD--------EKTRLLAITHV-SNVLGTENP----LA 184 (406)
T ss_dssp CTTS-----------CBCG------------------GGHHHHCC--------TTEEEEEEESB-CTTTCCBCC----HH
T ss_pred CCCC-----------CcCH------------------HHHHHHhc--------cCCeEEEEeCC-CccccCcCC----HH
Confidence 1000 0111 34555553 36789999997 888998886 99
Q ss_pred HHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccCC--------
Q 003466 645 ILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD-------- 714 (818)
Q Consensus 645 ~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~-------- 714 (818)
+|.++|++||+++|+||+++ +|... +.... ..+|++ +++|.+|. ..+|++++++++++.+...
T Consensus 185 ~i~~l~~~~~~~li~D~~~~-~g~~~--~~~~~--~~~d~~~~s~~K~~g~--~G~G~~~~~~~~~~~~~~~~~~~~~~~ 257 (406)
T 1kmj_A 185 EMITLAHQHGAKVLVDGAQA-VMHHP--VDVQA--LDCDFYVFSGHKLYGP--TGIGILYVKEALLQEMPPWEGGGSMIA 257 (406)
T ss_dssp HHHHHHHHTTCEEEEECTTT-TTTSC--CCHHH--HTCSEEEEEGGGTTSC--TTCEEEEECHHHHHHCCCSSCSTTSEE
T ss_pred HHHHHHHHcCCEEEEEchhh-cCCCC--Ccccc--cCCCEEEEEchhccCC--CCcEEEEEeHHHHhhcCCcccCCCcee
Confidence 99999999999999999995 44432 12222 348886 59999843 2378899999988765320
Q ss_pred --------------------hH-------------HHH---------------HHHHHHHHcCCCeeEEEe--eeeEEEE
Q 003466 715 --------------------SK-------------LWD---------------LELIQQISSHRTVQRVVA--LGTLCAI 744 (818)
Q Consensus 715 --------------------~~-------------~~~---------------~~l~~~l~~~~~v~~vrg--~Gl~~~i 744 (818)
.. .+. +.+.+.+++.+.+.-+.. .|.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 337 (406)
T 1kmj_A 258 TVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF 337 (406)
T ss_dssp EEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE
T ss_pred ecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE
Confidence 00 011 112334445554443333 6778888
Q ss_pred EEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+... .+..+.+.|.++||+++++ .+.+|+.++..+|++|+++++++|+++++.+
T Consensus 338 ~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 338 NLGKH---------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp EETTC---------CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCC---------CHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 76321 1446778899999999863 2789999999999999999999999988654
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=190.54 Aligned_cols=297 Identities=11% Similarity=0.043 Sum_probs=193.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+.+|.. .++ . +|.+.+|+.+++++...+. ......+|.+.|+++++.. .+.++|+++|++|++.+++
T Consensus 26 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~y~----~~~~~~~l~~~la~~~~~~-~~~v~~~~g~~~a~~~~~~ 96 (381)
T 1v2d_A 26 GAVNLGQGFP--SNP-P-PPFLLEAVRRALGRQDQYA----PPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLLQ 96 (381)
T ss_dssp TCEECCCCSC--SSC-C-CHHHHHHHHHHTTTSCSCC----CTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHH
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHhcCCC-hhhEEEcCChHHHHHHHHH
Confidence 5788887654 455 5 8999999999987621111 1123567888888887643 3589999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.+. .. ..+|++.+.+||+... ++...|...
T Consensus 97 ~~~-----~~----------------gd~Vl~~~~~~~~~~~-~~~~~g~~~---------------------------- 126 (381)
T 1v2d_A 97 SLV-----GP----------------GDEVVVLEPFFDVYLP-DAFLAGAKA---------------------------- 126 (381)
T ss_dssp HHC-----CT----------------TCEEEEEESCCTTHHH-HHHHTTCEE----------------------------
T ss_pred HhC-----CC----------------CCEEEEcCCCchhHHH-HHHHcCCEE----------------------------
Confidence 771 12 2479999999998553 222222110
Q ss_pred eeecCc---chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 560 WILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 560 ~~v~~P---~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
..++.+ +.+ ..| .+.+++.+. .++++|+++.. ++..|.+
T Consensus 127 ~~v~~~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~nptG~~ 168 (381)
T 1v2d_A 127 RLVRLDLTPEGF-----------RLD------------------LSALEKALT--------PRTRALLLNTP-MNPTGLV 168 (381)
T ss_dssp EEEECEEETTEE-----------ECC------------------HHHHHTTCC--------TTEEEEEEESS-CTTTCCC
T ss_pred EEEeCCCCCccC-----------CcC------------------HHHHHHhcC--------cCCEEEEECCC-CCCCCCc
Confidence 011111 000 011 144554442 35788888876 8888876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCccc--CCc-cchhcccCCCCcEEEeccccc-CCccccceeecchHHHhhcc
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGV-ETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR--tG~-~~a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~ 712 (818)
. |.+++++|.++|++||+++|+||++++|.. .+. .... .++..+++.+++|.+| .| +++|++++++++++.+.
T Consensus 169 ~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~ 245 (381)
T 1v2d_A 169 F-GERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLA 245 (381)
T ss_dssp C-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHH
T ss_pred c-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh-cCCCEEEEeechhhcCCcc-cceEEEEeCHHHHHHHH
Confidence 5 789999999999999999999999998743 222 2222 4577778889999998 67 79999999988876553
Q ss_pred CCh--------H--------HHH-------------------HHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCCCc
Q 003466 713 GDS--------K--------LWD-------------------LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYG 756 (818)
Q Consensus 713 ~~~--------~--------~~~-------------------~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~ 756 (818)
... . .+. +.+.+.+++.+ +.-+.. .|.++.+++...
T Consensus 246 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~------- 317 (381)
T 1v2d_A 246 GMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG-LRVYVPEGTYFLMAELPGW------- 317 (381)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCSBSSEEEEECTTC-------
T ss_pred HHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCCcceEEEEecChH-------
Confidence 211 0 010 11223344432 222222 255665655321
Q ss_pred hHHHHHHHHHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 757 SLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 757 ~~~a~~~~~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
. +.+.|.++||++.+. .+.+|+.++. ++++|++++++|.+++++..+.
T Consensus 318 -~----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~~ 374 (381)
T 1v2d_A 318 -D----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPREA 374 (381)
T ss_dssp -C----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC------
T ss_pred -h----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcccc
Confidence 1 556778999999873 3689999886 8999999999999998776543
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-18 Score=187.03 Aligned_cols=292 Identities=12% Similarity=0.027 Sum_probs=189.8
Q ss_pred eecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc------cCCCCCCcEEEeCChhHHHH
Q 003466 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG------VGKGWASRAYFSDNGSTAIE 475 (818)
Q Consensus 402 lD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~------~~~~~l~~v~f~~SGseA~e 475 (818)
||+.++.. .+| . +|++.+|+.+++++.+... ..+......++.+.|+++ .+.. .+.++++++|++|++
T Consensus 33 idl~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 33 IRLNTNEN--PYP-P-SEALVADLVATVDKIATEL-NRYPERDAVELRDELAAYITKQTGVAVT-RDNLWAANGSNEILQ 106 (369)
T ss_dssp EECSSCCC--CSC-C-CHHHHHHHHHHHHHHGGGT-TSCCCTTCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHH
T ss_pred eeccCCCC--CCC-C-CHHHHHHHHHHHHhccccc-ccCCCccHHHHHHHHHHhhhhcccCCCC-hHhEEECCChHHHHH
Confidence 78887654 466 5 8999999999997742111 111122123555555555 3321 368999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.+. ..| .+|++.+.+||+....+. ..|...
T Consensus 107 ~~~~~l~-----~~g----------------d~Vl~~~~~y~~~~~~~~-~~g~~~------------------------ 140 (369)
T 3cq5_A 107 QLLQAFG-----GPG----------------RTALGFQPSYSMHPILAK-GTHTEF------------------------ 140 (369)
T ss_dssp HHHHHHC-----STT----------------CEEEEEESSCTHHHHHHH-HTTCEE------------------------
T ss_pred HHHHHhc-----CCC----------------CEEEEcCCChHHHHHHHH-HcCCEE------------------------
Confidence 9998761 222 379999999998654322 222110
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
..++..+.+ ..| .+.+++.+.+ .++++|++++. ++..|.
T Consensus 141 ----~~v~~~~~~-----------~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~ 179 (369)
T 3cq5_A 141 ----IAVSRGADF-----------RID------------------MDVALEEIRA-------KQPDIVFVTTP-NNPTGD 179 (369)
T ss_dssp ----EEEECCTTS-----------SCC------------------HHHHHHHHHH-------HCCSEEEEESS-CTTTCC
T ss_pred ----EEecCCcCC-----------CCC------------------HHHHHHHhhc-------cCCCEEEEeCC-CCCCCC
Confidence 001100000 001 2456666652 14578888886 888898
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccC-CCCcEEEeccccc-CCccccceeecchHHHhhcc
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLG-CVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~g-v~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~ 712 (818)
+.+ .++++++|+.+++++|+||++++|++....... +.++ ..+++.+++|.+| +| +++|++++++++++.+.
T Consensus 180 ~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~ 254 (369)
T 3cq5_A 180 VTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVM 254 (369)
T ss_dssp CCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHH
T ss_pred CCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcc-cceEEEEeCHHHHHHHH
Confidence 775 577777888888999999999988754333322 3445 4566779999998 77 79999999999887664
Q ss_pred CChH--------------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHH
Q 003466 713 GDSK--------------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 713 ~~~~--------------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
.... .+ .+.+.+.+++.+ +..+...|.++.+++..+ +..
T Consensus 255 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~----------~~~ 323 (369)
T 3cq5_A 255 LVRLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEELG-YAVVPSESNFVFFGDFSD----------QHA 323 (369)
T ss_dssp TTSCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHT-CEEECCSSSEEEEECCSS----------HHH
T ss_pred HcCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCCCCeEEEEECCCC----------HHH
Confidence 3211 00 012233344332 333456677777766411 456
Q ss_pred HHHHHHhCCceEeec--CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPL--GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~--g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+.|.++||++.+. .+.+|+.++ +++|+++++++|++++
T Consensus 324 l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 324 AWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEII 365 (369)
T ss_dssp HHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHH
Confidence 788899999999986 478999987 7899999999998875
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-18 Score=190.40 Aligned_cols=313 Identities=10% Similarity=-0.029 Sum_probs=201.0
Q ss_pred CcCccccceeecccccccc-cCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCC
Q 003466 393 QKNKFIGQQFDACASWWTQ-GPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDN 469 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~-~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~S 469 (818)
+|+ ++||+.++..+. .++ . +|++.+|+.+++++.. .+....+..+...++++.+....+.+ ..+.++++++
T Consensus 36 ~g~----~~i~l~~~~~~~~~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g 109 (406)
T 1xi9_A 36 KGI----KVIRLNIGDPVKFDFQ-P-PEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAA 109 (406)
T ss_dssp TTC----CCEECCCCCGGGTTCC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred cCC----CEEEecCCCCCcCCCC-C-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCC
Confidence 577 899998876532 455 4 7999999999987632 11111123455666666665543211 1368999999
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccC
Q 003466 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 470 GseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
|++|++.+++.+. ..| .+|++.+.+||+....+ ...|...
T Consensus 110 ~~~al~~~~~~l~-----~~g----------------d~Vl~~~~~~~~~~~~~-~~~g~~~------------------ 149 (406)
T 1xi9_A 110 VTEALQLIFGALL-----DPG----------------DEILVPGPSYPPYTGLV-KFYGGKP------------------ 149 (406)
T ss_dssp HHHHHHHHHHHHC-----CTT----------------CEEEEEESCCHHHHHHH-HHTTCEE------------------
T ss_pred hHHHHHHHHHHhC-----CCC----------------CEEEEcCCCCccHHHHH-HHcCCEE------------------
Confidence 9999999999761 122 37999999999854332 2222110
Q ss_pred CCcccccCcceeecCcchhhhhcccccccccc-CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFC-SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~n-d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
..++..... .|+ | .+.|++.+. .++++|+++..
T Consensus 150 ----------~~v~~~~~~----------~~~~d------------------~~~l~~~l~--------~~~~~v~i~~p 183 (406)
T 1xi9_A 150 ----------VEYRTIEEE----------DWQPD------------------IDDIRKKIT--------DRTKAIAVINP 183 (406)
T ss_dssp ----------EEEEEEGGG----------TSEEC------------------HHHHHHHCC--------TTEEEEEEESS
T ss_pred ----------EEeecCCCc----------CCcCC------------------HHHHHHhhC--------cCceEEEEECC
Confidence 011110000 000 1 256666664 25778888876
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCC-cEE--Eeccccc-CCccccceee--
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP-DIA--CYGKLLT-GGVIPLAATL-- 702 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P-Div--tlgKgLg-gGy~PlsAvl-- 702 (818)
++..|.+. |++++++|.++|++||+++|+||++++|++.|.......++-.. |++ +++|.+| .| +++|+++
T Consensus 184 -~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~ 260 (406)
T 1xi9_A 184 -NNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATG-WRLGYMYFV 260 (406)
T ss_dssp -CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGG-GCCEEEEEE
T ss_pred -CCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCc-cEEEEEEEe
Confidence 88888765 78999999999999999999999999987644444444444111 444 6799998 67 7999999
Q ss_pred cch----HHHhhccC-----Ch--H--------HH-----------------HHHHHHHHHcCCCeeEEEee-eeEEEEE
Q 003466 703 ATN----AVFDSFVG-----DS--K--------LW-----------------DLELIQQISSHRTVQRVVAL-GTLCAIE 745 (818)
Q Consensus 703 ~~~----~i~~~l~~-----~~--~--------~~-----------------~~~l~~~l~~~~~v~~vrg~-Gl~~~ie 745 (818)
+++ ++++.+.. .. . .+ .+.+.+.+++++.+.-+... |+++.+.
T Consensus 261 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 340 (406)
T 1xi9_A 261 DPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPK 340 (406)
T ss_dssp CTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCE
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEe
Confidence 888 87765421 00 0 11 01233445556554333333 4444445
Q ss_pred EecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.... . ..+..+++.|+ ++||++.+. .+.+|+.++ +++++|++++++|.++++++
T Consensus 341 ~~~~~---~---~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 341 IEVGP---W---KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp ECSCS---C---SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred cCccC---C---CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 54210 0 12456888887 899999874 478999997 88999999999999998764
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=195.28 Aligned_cols=303 Identities=8% Similarity=0.008 Sum_probs=193.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-C-CCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-W-ASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~-l~~v~f~~SGseA~e 475 (818)
++||+.+|.. .+| . +|.|.+|+.+++++... +....+..+....+++.+.+..+.+ . .+.++++++|++|++
T Consensus 48 ~~idl~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~ 123 (404)
T 2o1b_A 48 PLINMAVGIP--DGP-T-PQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLV 123 (404)
T ss_dssp CCEECCCCSC--SSC-C-CHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHH
T ss_pred CEEecCCcCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHH
Confidence 8999998765 466 5 89999999999865211 1111123344555555555443532 1 158999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.+ ...| .+|++.+.+||+....+. ..|....
T Consensus 124 ~~~~~l-----~~~g----------------d~Vl~~~p~y~~~~~~~~-~~g~~~~----------------------- 158 (404)
T 2o1b_A 124 AVPTCV-----INPG----------------DYVLLPDPGYTDYLAGVL-LADGKPV----------------------- 158 (404)
T ss_dssp HHHHHH-----CCTT----------------CEEEEEESCCSSHHHHHH-HTTCEEE-----------------------
T ss_pred HHHHHh-----cCCC----------------CEEEEcCCCchhHHHHHH-HCCCEEE-----------------------
Confidence 999976 1122 379999999998664332 2222100
Q ss_pred cCcceeecCc-chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 556 YNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 556 ~~~~~~v~~P-~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
.++.. +.+ -.|+ +.+++.+. .++++|+++.. ++..|
T Consensus 159 -----~v~~~~~~~-----------~~d~------------------~~l~~~l~--------~~~~~v~l~~p-~nptG 195 (404)
T 2o1b_A 159 -----PLNLEPPHY-----------LPDW------------------SKVDSQII--------DKTKLIYLTYP-NNPTG 195 (404)
T ss_dssp -----EEECCTTTC-----------CCCG------------------GGSCHHHH--------HHEEEEEECSS-CTTTC
T ss_pred -----EeccCcccC-----------cCCH------------------HHHHHhhc--------cCceEEEEcCC-CCCCC
Confidence 01110 000 0111 22333443 25678888754 77778
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc---chhc-ccCCCCcEEEeccccc-CCccccceeecchHHHh
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~---~a~e-~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
.+. |.+++++|.++|++||+++|+||++++|.+.|+. +... .++....+.+++|.+| .| +++|++++++++++
T Consensus 196 ~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~ 273 (404)
T 2o1b_A 196 STA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQ 273 (404)
T ss_dssp CCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCch-hheEeEecCHHHHH
Confidence 765 8899999999999999999999999998766642 2211 1233455679999998 78 79999999999887
Q ss_pred hccCChH----------------HHH-----------------HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCC
Q 003466 710 SFVGDSK----------------LWD-----------------LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~~----------------~~~-----------------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~ 755 (818)
.+..... .+. +.+.+.+++++ +.-+... |+++.+++...
T Consensus 274 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~------ 346 (404)
T 2o1b_A 274 ALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKAD-LPFVHAKGGIYVWLETPPG------ 346 (404)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCCBSSEEEEECCTT------
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC-CeecCCCcceEEEEeCCCC------
Confidence 6532110 111 11233445453 3333333 55666776422
Q ss_pred chHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 756 ~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
..+..+++.|+ ++||++.++ .+.+|+.++. ++++|++++++|.+++++
T Consensus 347 --~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 347 --YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp --CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred --CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 11456788887 579999873 4789999986 788999999999887654
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-18 Score=190.87 Aligned_cols=312 Identities=12% Similarity=0.041 Sum_probs=195.1
Q ss_pred CCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCC
Q 003466 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDN 469 (818)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~S 469 (818)
.+|+ +||||.+|.. .++. +|+|.+|+.+++++.. .+....+..+...++++.+.+..+.+ ..+.++|+++
T Consensus 28 ~~g~----~~i~l~~g~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g 99 (391)
T 3h14_A 28 EAGR----RIIHMEVGQP--GTGA--PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPG 99 (391)
T ss_dssp HTTC----CCEECCCSSC--SSCS--CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred hcCC----CeEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecC
Confidence 3677 9999998763 3443 7899999999987522 11111223455666666665543311 1368999999
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccC
Q 003466 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 470 GseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
|++|++.+++... ..| .+|++...+||+..... ...|...
T Consensus 100 ~~~al~~~~~~l~-----~~g----------------d~vl~~~p~~~~~~~~~-~~~g~~~------------------ 139 (391)
T 3h14_A 100 SSGGFLLAFTALF-----DSG----------------DRVGIGAPGYPSYRQIL-RALGLVP------------------ 139 (391)
T ss_dssp HHHHHHHHHHHHC-----CTT----------------CEEEEEESCCHHHHHHH-HHTTCEE------------------
T ss_pred hHHHHHHHHHHhc-----CCC----------------CEEEEcCCCCccHHHHH-HHcCCEE------------------
Confidence 9999999999761 222 37899999998755322 2222110
Q ss_pred CCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003466 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~ 629 (818)
..++.... + .|. .| .+. +++ . ++.+|+++..
T Consensus 140 ----------~~v~~~~~-------------~----~~~--~d--------~~~----l~~----~---~~~~v~i~~p- 170 (391)
T 3h14_A 140 ----------VDLPTAPE-------------N----RLQ--PV--------PAD----FAG----L---DLAGLMVASP- 170 (391)
T ss_dssp ----------EEEECCGG-------------G----TTS--CC--------HHH----HTT----S---CCSEEEEESS-
T ss_pred ----------EEeecCcc-------------c----CCC--CC--------HHH----HHh----c---CCeEEEECCC-
Confidence 00111000 0 000 00 122 221 1 5667777775
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccCCCCcEEEeccccc-CCccccceeecchHH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i 707 (818)
++..|.+. |.+.+++|.++|++||+++|+||++++|++.|..... +..+....+.+++|.+| .| +++|++++++++
T Consensus 171 ~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~ 248 (391)
T 3h14_A 171 ANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTG-WRVGWMVVPEDQ 248 (391)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTT-SCCEEEECCGGG
T ss_pred CCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcc-ceeEEEEeCHHH
Confidence 78888866 7788999999999999999999999999888763332 22222233448999998 78 799999999988
Q ss_pred HhhccCChH--------------------------------HHHHHHHHHHHcCCCeeEEEeee-eEEEEEEecCcccCC
Q 003466 708 FDSFVGDSK--------------------------------LWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAG 754 (818)
Q Consensus 708 ~~~l~~~~~--------------------------------~~~~~l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~~~~ 754 (818)
++.+..... ...+.+.+.+++++....++..| +++.+++....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 324 (391)
T 3h14_A 249 VRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLT---- 324 (391)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTC----
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccC----
Confidence 776532110 01122344455555443334444 55556664311
Q ss_pred CchHHHHHHHHHHHhC-CceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 755 YGSLYAASLLKKLRED-GVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~-Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
..+..+++.|+++ ||++.++ .+.+|+.++. ++++|++++++|.+++++....
T Consensus 325 ---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~~~ 385 (391)
T 3h14_A 325 ---DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARGEG 385 (391)
T ss_dssp ---SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC---
T ss_pred ---CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhccc
Confidence 1255688888876 9999872 3589999886 7899999999999998876543
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=188.09 Aligned_cols=319 Identities=13% Similarity=0.014 Sum_probs=202.1
Q ss_pred EeCCcCccccceeecccccccc-cCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC----CCCcE
Q 003466 390 YQDQKNKFIGQQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG----WASRA 464 (818)
Q Consensus 390 ~D~dG~~~~~~ylD~~sg~~~~-~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~----~l~~v 464 (818)
.+.+|+ .+||+..|.... +-..- +|+|.+|+.+++++.....+ .......++.+.|+++++.. ..+++
T Consensus 49 ~~~~~~----~~i~l~~g~~~~~g~~~~-~~~v~~a~~~~~~~~~~~~y--~~~~g~~~lr~~la~~~~~~~~~~~~~~v 121 (427)
T 3dyd_A 49 KPNPNK----TMISLSIGDPTVFGNLPT-DPEVTQAMKDALDSGKYNGY--APSIGFLSSREEIASYYHCPEAPLEAKDV 121 (427)
T ss_dssp CCCTTS----CCEECCCSCTTTTSSSCC-CHHHHHHHHHHHHHCCSSSC--CCTTCCHHHHHHHHHHHCBTTBCCCGGGE
T ss_pred cccCCC----CEEeCCCcCCCccCCCCC-CHHHHHHHHHHHhcCcCCCC--CCCCCcHHHHHHHHHHHhhcCCCCChHHE
Confidence 344577 899999887432 12345 89999999999886422111 01222345556666654410 13689
Q ss_pred EEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCC
Q 003466 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (818)
Q Consensus 465 ~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~ 544 (818)
+++++|++|++.+++.+. +.| .+|++.+.+|++....+... |...
T Consensus 122 ~~t~g~t~al~~~~~~l~-----~~g----------------d~vl~~~p~~~~~~~~~~~~-g~~~------------- 166 (427)
T 3dyd_A 122 ILTSGCSQAIDLCLAVLA-----NPG----------------QNILVPRPGFSLYKTLAESM-GIEV------------- 166 (427)
T ss_dssp EEESSHHHHHHHHHHHHC-----CTT----------------CEEEEEESCCTHHHHHHHHT-TCEE-------------
T ss_pred EEecCcHHHHHHHHHHhc-----CCC----------------CEEEEcCCCchhHHHHHHHc-CCEE-------------
Confidence 999999999999999871 222 37889999998855332222 1110
Q ss_pred CcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 003466 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (818)
Q Consensus 545 ~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI 624 (818)
+.+|.... ++ +. -| .+.+++.+. .+..+|+
T Consensus 167 -----------------~~~~~~~~-----------~~----~~--~d--------~~~l~~~l~--------~~~~~v~ 196 (427)
T 3dyd_A 167 -----------------KLYNLLPE-----------KS----WE--ID--------LKQLEYLID--------EKTACLI 196 (427)
T ss_dssp -----------------EEEEEEGG-----------GT----TE--EC--------HHHHHSSCC--------TTEEEEE
T ss_pred -----------------EEEecccc-----------cC----CC--CC--------HHHHHHHhc--------cCCCEEE
Confidence 00110000 00 00 00 144554443 2355566
Q ss_pred EccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCcEE---Eeccccc-CCccccc
Q 003466 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT-GGVIPLA 699 (818)
Q Consensus 625 vEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---tlgKgLg-gGy~Pls 699 (818)
+... ++..|.+. |++.+++|.++|++||+++|+||++++|++.|..+ ....++..++++ +++|.++ .| +++|
T Consensus 197 i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G-~riG 273 (427)
T 3dyd_A 197 VNNP-SNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG-WRLG 273 (427)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG-GCCE
T ss_pred EECC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC-cceE
Confidence 6654 78888866 88899999999999999999999999999988744 555667677776 8999965 46 7999
Q ss_pred eeecc-------hHHHhhccCCh-------H--------HH------------------HHHHHHHHHcCCCeeEEEee-
Q 003466 700 ATLAT-------NAVFDSFVGDS-------K--------LW------------------DLELIQQISSHRTVQRVVAL- 738 (818)
Q Consensus 700 Avl~~-------~~i~~~l~~~~-------~--------~~------------------~~~l~~~l~~~~~v~~vrg~- 738 (818)
+++++ +++++.+.... . .+ .+.+.+.|++++.+..+...
T Consensus 274 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~ 353 (427)
T 3dyd_A 274 WILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSG 353 (427)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSB
T ss_pred EEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCe
Confidence 99987 45665432110 0 11 11234455666666555444
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|+++.+.+.... .++......+++.|+ ++||++.|+ .+.+|+... +++++|++++++|.++++++
T Consensus 354 g~~~~~~l~~~~---~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 354 AMYLMVGIEMEH---FPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT--VPEVMMLEACSRIQEFCEQH 424 (427)
T ss_dssp TTEEEEEECGGG---CTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC--SCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCHhh---cCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC--CCHHHHHHHHHHHHHHHHHh
Confidence 445555664221 000112456777775 889999984 378999864 78999999999999888654
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=185.15 Aligned_cols=304 Identities=10% Similarity=0.069 Sum_probs=197.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-----cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-----~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA 473 (818)
++|||.+| ...... +|+|.+|+.+++++.. .+....+..+...++++.+.+..+.+ ..+.++|+++|++|
T Consensus 36 ~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 36 NVYDFSIG---NPSIPA-PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp GCEECCSC---CCCSCC-CHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CeEEeecC---CCCCCC-CHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 79999876 222236 8999999999988732 12112233566777777777654421 13689999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
++.+++.+. . +++.+|++.+.+||+....+.. .|...
T Consensus 112 l~~~~~~l~-----~---------------~g~d~vl~~~p~~~~~~~~~~~-~g~~~---------------------- 148 (398)
T 3ele_A 112 LSICFRALT-----S---------------DAYDEFITIAPYFPEYKVFVNA-AGARL---------------------- 148 (398)
T ss_dssp HHHHHHHHC-----C---------------STTCEEEEESSCCTHHHHHHHH-TTCEE----------------------
T ss_pred HHHHHHHHc-----C---------------CCCCEEEEeCCCchhhHHHHHH-cCCEE----------------------
Confidence 999999771 1 2224799999999985433222 22110
Q ss_pred cccCcceeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 554 FMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 554 ~~~~~~~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
..++... .+ .-| .+.+++.+. .++.+|++... ++.
T Consensus 149 ------~~v~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~p-~np 184 (398)
T 3ele_A 149 ------VEVPADTEHF-----------QID------------------FDALEERIN--------AHTRGVIINSP-NNP 184 (398)
T ss_dssp ------EEECCCTTTS-----------SCC------------------HHHHHHTCC--------TTEEEEEECSS-CTT
T ss_pred ------EEEecCCcCC-----------cCC------------------HHHHHHHhC--------cCCCEEEEcCC-CCC
Confidence 0011100 00 001 255666553 35777888664 788
Q ss_pred CCcccCCHHHHHHHHHHHHh------cCCcEEEeecccCcccCCccc--hhcccCCCCcEEEeccccc-CCccccceeec
Q 003466 633 GGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVET--TADLLGCVPDIACYGKLLT-GGVIPLAATLA 703 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~------~gilLI~DEV~TGfGRtG~~~--a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~ 703 (818)
.|.+. |.+.+++|.++|++ ||+++|+||++++|++.|... ..+.++....+.+++|.+| .| +++|++++
T Consensus 185 tG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~ 262 (398)
T 3ele_A 185 SGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPG-ERIGYVLV 262 (398)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTT-TCCEEEEC
T ss_pred CCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCcc-ceeEEEEE
Confidence 88866 77789999999999 999999999999998877532 2244455555668999998 88 79999999
Q ss_pred chHHHh------hcc---------CCh-H-------------------HHHHHHHHHHHcCCCeeEEEee-eeEEEEEEe
Q 003466 704 TNAVFD------SFV---------GDS-K-------------------LWDLELIQQISSHRTVQRVVAL-GTLCAIELQ 747 (818)
Q Consensus 704 ~~~i~~------~l~---------~~~-~-------------------~~~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~ 747 (818)
++++++ .+. ... . ...+.+.+.+++.+. .-+... |.++.+.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~ 341 (398)
T 3ele_A 263 PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGDINAYKENRDLLYEGLTRIGY-HCFKPDGAFYMFVKAL 341 (398)
T ss_dssp CTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCCCHHHHHHHHHHHHHHHHHHTC-CEECCSBSSEEEEECS
T ss_pred cchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC-eecCCCeeEEEEEEcC
Confidence 887432 110 010 0 111233444544432 222223 444555553
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.. .+..+++.|.++||++.++ .+.+|+... +++++|++++++|.++++++
T Consensus 342 ~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 342 ED---------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp SS---------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CC---------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 21 1456788899999999984 378999875 79999999999999998765
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-18 Score=194.28 Aligned_cols=317 Identities=10% Similarity=0.019 Sum_probs=200.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ 476 (818)
++||+.+|.. .++ . +|.|.+|+.+++++.+ ++....+..+...++++.+.+..+.+ ..+.++++++|++|++.
T Consensus 58 ~~i~l~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~ 133 (447)
T 3b46_A 58 ELINLGQGFF--SYS-P-PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILS 133 (447)
T ss_dssp CCEECCCCSC--SSC-C-CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHH
T ss_pred CeEEccCCCC--CCC-C-CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 8999988754 445 5 8999999999998632 22212234566777777776655432 12579999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.+. ..| .+||+.+.+||+.... +...|....
T Consensus 134 ~~~~l~-----~~g----------------d~Vlv~~p~y~~~~~~-~~~~g~~~~------------------------ 167 (447)
T 3b46_A 134 CLMGLL-----NAG----------------DEVIVFEPFFDQYIPN-IELCGGKVV------------------------ 167 (447)
T ss_dssp HHHHHC-----CTT----------------CEEEEEESCCTTHHHH-HHHTTCEEE------------------------
T ss_pred HHHHHc-----CCC----------------CEEEEeCCCchhHHHH-HHHcCCEEE------------------------
Confidence 999761 222 3799999999985533 222222110
Q ss_pred CcceeecC-cch--hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 557 NSKWILSL-PEW--LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 557 ~~~~~v~~-P~~--~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
.++. ++. ..+.. ...+. ..| .+.|++.+. .++++|+++.. ++..
T Consensus 168 ----~v~~~~~~~~~~~~~-~~~~~-~~d------------------~~~l~~~l~--------~~~~~v~l~~p-~npt 214 (447)
T 3b46_A 168 ----YVPINPPKELDQRNT-RGEEW-TID------------------FEQFEKAIT--------SKTKAVIINTP-HNPI 214 (447)
T ss_dssp ----EEEEECCGGGGTSCB-CSTTS-EEC------------------HHHHHTTCC--------TTEEEEEEESS-CTTT
T ss_pred ----EEeCCCccccccccc-cccCc-ccC------------------HHHHHHhhc--------cCCeEEEEeCC-CCCC
Confidence 0110 000 00000 00000 011 244555442 46788888876 8888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc---chh--cccCCCCcEEEeccccc-CCccccceeec-chH
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTA--DLLGCVPDIACYGKLLT-GGVIPLAATLA-TNA 706 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~---~a~--e~~gv~PDivtlgKgLg-gGy~PlsAvl~-~~~ 706 (818)
|.+. +.+++++|.++|++||+++|+||++++|++.|.. ... ..++..+++.+++|.++ .| +++|++++ +++
T Consensus 215 G~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~riG~~~~~~~~ 292 (447)
T 3b46_A 215 GKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG-WRIGWVLSLNAE 292 (447)
T ss_dssp CCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT-SCCEEEECSCHH
T ss_pred Cccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc-hhhEEEEeCCHH
Confidence 8775 6899999999999999999999999998777742 222 23577777889999998 78 69999999 998
Q ss_pred HHhhccCChH----------------HHH-------------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcc
Q 003466 707 VFDSFVGDSK----------------LWD-------------------LELIQQISSHRTVQRVVALGTLCAIELQAAGC 751 (818)
Q Consensus 707 i~~~l~~~~~----------------~~~-------------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~ 751 (818)
+++.+..... .+. +.+.+.+++++........|.++.+++.....
T Consensus 293 l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~ 372 (447)
T 3b46_A 293 LLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKI 372 (447)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECTTCCC
T ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecccccC
Confidence 8876542110 010 11223344433211123446777777743200
Q ss_pred cCCC-------chHHHHHHHHHHH-hCCceEeec------------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 752 NAGY-------GSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 752 ~~~~-------~~~~a~~~~~~l~-e~Gvlv~p~------------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+... ....+..+++.|+ ++||++.|+ .+.+|++++ .++++|++++++|.+
T Consensus 373 p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 373 PEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp CTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred ccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 0000 0123557888887 689999873 478999987 489999999998876
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-18 Score=188.50 Aligned_cols=307 Identities=13% Similarity=0.030 Sum_probs=195.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChhHHHHHHHHHhccCCC-CCCc-EEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASR-AYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~-~l~~-v~f~~SGseA~e~ 476 (818)
.+||+.++.. .+| . +|++.+|+.+++++... +....+..+...++++.+.+..+.. ..+. ++++++|++|++.
T Consensus 27 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 27 DVISLGIGEP--DFD-T-PQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SCEECCCCSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CeEecCCCCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 6888887653 456 5 89999999999876321 1111123455666666665543411 1357 9999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.+. ..| .+|++.+.+||+.... +...|...
T Consensus 103 ~~~~~~-----~~g----------------d~vl~~~~~~~~~~~~-~~~~g~~~------------------------- 135 (389)
T 1gd9_A 103 GLSAFL-----KDG----------------EEVLIPTPAFVSYAPA-VILAGGKP------------------------- 135 (389)
T ss_dssp HHTTTC-----CTT----------------CEEEEEESCCTTHHHH-HHHHTCEE-------------------------
T ss_pred HHHHhC-----CCC----------------CEEEEcCCCchhHHHH-HHHCCCEE-------------------------
Confidence 998761 122 4799999999986532 22222110
Q ss_pred CcceeecCcchhhhhcccccccccc-CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFC-SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~n-d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
..++..... + |. | .+.+++.+. .++++|+++.. ++..|.
T Consensus 136 ---~~v~~~~~~--------~--~~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~nptG~ 175 (389)
T 1gd9_A 136 ---VEVPTYEED--------E--FRLN------------------VDELKKYVT--------DKTRALIINSP-CNPTGA 175 (389)
T ss_dssp ---EEEECCGGG--------T--TCCC------------------HHHHHHHCC--------TTEEEEEEESS-CTTTCC
T ss_pred ---EEeccCCcc--------C--CCCC------------------HHHHHHhcC--------cCceEEEEECC-CCCCCc
Confidence 011111000 0 00 1 255666664 25778888775 787887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhccc-CC-CCc--EEEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GC-VPD--IACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~-gv-~PD--ivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. |.+++++|.++|++||+++|+||++++|.+.|+ ......+ +. ..| +.+++|.+| .| +++|++++++++++
T Consensus 176 ~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~ 253 (389)
T 1gd9_A 176 VL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIE 253 (389)
T ss_dssp CC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcc-cceEEEEECHHHHH
Confidence 65 788999999999999999999999999877776 3333332 22 245 448999998 67 79999999998877
Q ss_pred hccCCh--------H--------------H--HH-----------HHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccC
Q 003466 710 SFVGDS--------K--------------L--WD-----------LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNA 753 (818)
Q Consensus 710 ~l~~~~--------~--------------~--~~-----------~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~ 753 (818)
.+.... . . +. +.+.+.+++++. .-+.. .|+++.+++....
T Consensus 254 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~~~~--- 329 (389)
T 1gd9_A 254 RMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGL-PTVKPKGAFYIFPRIRDTG--- 329 (389)
T ss_dssp HHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCBTTEECCBCGGGT---
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCC-eecCCCeeeEEEEeccCCC---
Confidence 553210 0 0 00 112233444432 11122 2445555553210
Q ss_pred CCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+++.|+ ++||++.++ .+.+|+.++. ++++|++++++|.+++++.+
T Consensus 330 ----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 330 ----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKERK 387 (389)
T ss_dssp ----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred ----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcc
Confidence 12456888898 899999873 4689999874 89999999999999887643
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=191.16 Aligned_cols=266 Identities=17% Similarity=0.101 Sum_probs=180.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc
Q 003466 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524 (818)
Q Consensus 445 ~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al 524 (818)
..+|.+.|++++..-..+.++++++|++|++.+++.+. ..| ..||+...+||+.... +
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-----~~g----------------d~Vl~~~~~~~~~~~~-~ 122 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-----EPG----------------DHVISLYPTYQQLYDI-P 122 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-----CTT----------------CEEEEEESSCTHHHHH-H
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-----CCC----------------CEEEEeCCCchhHHHH-H
Confidence 46788888887632114689999999999999999761 222 3799999999884422 2
Q ss_pred cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHH
Q 003466 525 EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSY 603 (818)
Q Consensus 525 s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~ 603 (818)
...|... ..++.+... .| .| .+.
T Consensus 123 ~~~g~~~----------------------------~~v~~~~~~----------~~~~d------------------~~~ 146 (375)
T 3op7_A 123 KSLGAEV----------------------------DLWQIEEEN----------GWLPD------------------LEK 146 (375)
T ss_dssp HHTTCEE----------------------------EEEEEEGGG----------TTEEC------------------HHH
T ss_pred HHcCCEE----------------------------EEEeccccC----------CCCCC------------------HHH
Confidence 2222110 001110000 00 01 256
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc
Q 003466 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD 683 (818)
Q Consensus 604 Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD 683 (818)
+++.+. .++++|++++. ++..|... |++++++|.++|++||+++|+||++++|++.+.....+.++..++
T Consensus 147 l~~~l~--------~~~~~v~~~~~-~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~ 216 (375)
T 3op7_A 147 LRQLIR--------PTTKMICINNA-NNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIA 216 (375)
T ss_dssp HHHHCC--------TTCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEE
T ss_pred HHHhhc--------cCCeEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEE
Confidence 666664 35778899986 88888766 889999999999999999999999999887755555566777788
Q ss_pred EEEeccccc-CCccccceeecchHHHhhccCChH----------------H-------H----------HHHHHHHHHcC
Q 003466 684 IACYGKLLT-GGVIPLAATLATNAVFDSFVGDSK----------------L-------W----------DLELIQQISSH 729 (818)
Q Consensus 684 ivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~~----------------~-------~----------~~~l~~~l~~~ 729 (818)
+.+++|++| +| +++|++++++++++.+..... . + .+.+.+.++++
T Consensus 217 ~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 295 (375)
T 3op7_A 217 VNSLSKTYSLPG-IRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEE 295 (375)
T ss_dssp EEESSSSSSCGG-GCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeEChhhcCCcc-cceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999998 77 799999999999887654321 0 0 01223345556
Q ss_pred CCeeEEEeeee-EEEEEEecCcccCCCchHHHHHHHHHH-HhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 730 RTVQRVVALGT-LCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 730 ~~v~~vrg~Gl-~~~iel~~~~~~~~~~~~~a~~~~~~l-~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
+.+..++..|. +.-+.+... .....+++.| .++||++.|+ .+.+|+... .++++|++++++|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~--~~~~~i~~~l~~l~ 365 (375)
T 3op7_A 296 PLVSYIRPAVVSTSFVKIAVD--------MPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFA--CEQETLIKGLEKLS 365 (375)
T ss_dssp TTEEECCCSSSSCEEEEECCS--------SCHHHHHHHHHHHHCEECEEGGGGTCTTEEEECCC--SCHHHHHHHHHHHH
T ss_pred CCceEecCCCeEEEeEEcCCC--------CCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEEec--CCHHHHHHHHHHHH
Confidence 66655554443 333444322 1245677777 4889999984 378888754 55689999999999
Q ss_pred HHHHHHH
Q 003466 803 QRLEEFD 809 (818)
Q Consensus 803 ~~l~~l~ 809 (818)
++++++.
T Consensus 366 ~~l~~~~ 372 (375)
T 3op7_A 366 QFLRRFD 372 (375)
T ss_dssp HHHGGGC
T ss_pred HHHHHHh
Confidence 9987653
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=185.21 Aligned_cols=301 Identities=15% Similarity=0.068 Sum_probs=193.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e~ 476 (818)
.+||+.++.. .+| . +|++.+|+.++++.. ..+....+..+...++++.+.+..+.+ ..+ .++++++|++|++.
T Consensus 31 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 31 QAINLSQGFP--DFD-G-PRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 6899988654 456 5 899999999998762 111111123455666666665544421 135 89999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.+ ...| .+|++.+.+||+... ++...|...
T Consensus 107 ~~~~~-----~~~g----------------d~vl~~~p~~~~~~~-~~~~~g~~~------------------------- 139 (386)
T 1u08_A 107 AITAL-----VRNG----------------DEVICFDPSYDSYAP-AIALSGGIV------------------------- 139 (386)
T ss_dssp HHHHH-----CCTT----------------CEEEEEESCCTTHHH-HHHHTTCEE-------------------------
T ss_pred HHHHh-----CCCC----------------CEEEEeCCCchhHHH-HHHHcCCEE-------------------------
Confidence 99976 1122 379999999998543 222222110
Q ss_pred CcceeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 557 NSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
..++... .+ ..| .+.+++.+. .++++|+++.. ++..|.
T Consensus 140 ---~~v~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~l~~p-~nptG~ 178 (386)
T 1u08_A 140 ---KRMALQPPHF-----------RVD------------------WQEFAALLS--------ERTRLVILNTP-HNPSAT 178 (386)
T ss_dssp ---EEEECCTTTC-----------CCC------------------HHHHHHHCC--------TTEEEEEEESS-CTTTCC
T ss_pred ---EEeecCcccC-----------cCC------------------HHHHHHhhc--------ccCEEEEEeCC-CCCCCc
Confidence 0011100 00 011 255666653 35788888875 788887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc----cchhc-ccCCCCcEEEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~----~~a~e-~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. |.+++++|.++|++||+++|+||++++|.+.|. +.... .++....+.+++|.+| .| +++|++++++++++
T Consensus 179 ~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~ 256 (386)
T 1u08_A 179 VW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISA 256 (386)
T ss_dssp CC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHH
T ss_pred cC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc-cceEEEEcCHHHHH
Confidence 65 788999999999999999999999999877664 22222 3566667789999998 68 79999999999877
Q ss_pred hccCCh--------H--------HHH-----------------HHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCC
Q 003466 710 SFVGDS--------K--------LWD-----------------LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~--------~--------~~~-----------------~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~ 755 (818)
.+.... . .+. +.+.+.+++++ +.-+. ..|.++.+++.... .
T Consensus 257 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~---~- 331 (386)
T 1u08_A 257 EIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESR-LEILPCEGTYFLLVDYSAVS---T- 331 (386)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSS-CEECCCCBSSEEEEECTTTC---C-
T ss_pred HHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCceEEEEEecCCCC---C-
Confidence 553211 0 010 11223334443 22122 23567777764320 0
Q ss_pred chHHHHHHHHHHH-hCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLR-EDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 756 ~~~~a~~~~~~l~-e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
..+..+++.|+ ++||++.++ .+.+|+.++ .++++|++++++|.+
T Consensus 332 --~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 332 --LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp --SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 01456777776 689999863 268999987 489999999998853
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-18 Score=185.19 Aligned_cols=290 Identities=13% Similarity=0.033 Sum_probs=186.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
++||+.++.. .+|+ +|++.+|+.++++... .+....+..+...++++.+....+.+ ..+.++++++|++|++.+
T Consensus 30 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~ 105 (370)
T 2z61_A 30 KVIHLEIGEP--DFNT--PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFA 105 (370)
T ss_dssp CCEECCCCSC--SSCC--CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHH
Confidence 8999988654 4664 6999999999987632 11111223455556666665432211 136899999999999999
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.+. ..| .+|++.+.+||+....+ ...|..
T Consensus 106 ~~~~~-----~~g----------------d~vl~~~p~~~~~~~~~-~~~g~~--------------------------- 136 (370)
T 2z61_A 106 LSSII-----DDG----------------DEVLIQNPCYPCYKNFI-RFLGAK--------------------------- 136 (370)
T ss_dssp HHHHC-----CTT----------------CEEEEESSCCTHHHHHH-HHTTCE---------------------------
T ss_pred HHHhc-----CCC----------------CEEEEeCCCchhHHHHH-HHcCCE---------------------------
Confidence 99771 122 47999999999855332 211111
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
.+.+| .| .+.+++.+. .++++|+++.. ++..|.+.
T Consensus 137 ---~~~v~---------------~d------------------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~ 171 (370)
T 2z61_A 137 ---PVFCD---------------FT------------------VESLEEALS--------DKTKAIIINSP-SNPLGEVI 171 (370)
T ss_dssp ---EEEEC---------------SS------------------HHHHHHHCC--------SSEEEEEEESS-CTTTCCCC
T ss_pred ---EEEeC---------------CC------------------HHHHHHhcc--------cCceEEEEcCC-CCCcCccc
Confidence 00111 11 145666664 25778888775 78888887
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc-CC-CCc--EEEeccccc-CCccccceeecchHHHhhcc
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GC-VPD--IACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv-~PD--ivtlgKgLg-gGy~PlsAvl~~~~i~~~l~ 712 (818)
+ .+ |.++|++||+++|+||++++|.+.|+......+ +. ..| +.+++|.+| .| +++|++++++++++.+.
T Consensus 172 ~-~~----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~ 245 (370)
T 2z61_A 172 D-RE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTG-WRIGYVISNDEIIEAIL 245 (370)
T ss_dssp C-HH----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred C-HH----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCcc-ceEEEEEECHHHHHHHH
Confidence 5 33 999999999999999999988777754333333 12 124 458999998 77 69999999999877553
Q ss_pred CChH-------------------H-HH--------------HHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCCCch
Q 003466 713 GDSK-------------------L-WD--------------LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 713 ~~~~-------------------~-~~--------------~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~ 757 (818)
.... . .. +.+.+.+++++ +.-+.. .|.++.+++..
T Consensus 246 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~--------- 315 (370)
T 2z61_A 246 KLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFG-WEVNNPIGAYYVFPNIGE--------- 315 (370)
T ss_dssp HHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCBTTEECCBCSS---------
T ss_pred HHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCcceEEEEecCC---------
Confidence 2110 1 01 11223344442 211122 24444444432
Q ss_pred HHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 758 ~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.+..+.+.|+ ++||++.++ .+.+|+.++ +++++|++++++|.++++
T Consensus 316 -~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 316 -DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp -CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 1456888887 789999873 468999998 689999999999988764
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=190.16 Aligned_cols=311 Identities=11% Similarity=0.022 Sum_probs=195.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e~ 476 (818)
.+||+.+|.. .+| . +|++.+|+.+++++. ..+....+..+...++++.+.+..+.+ ..+ .++++++|++|++.
T Consensus 26 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~ 101 (411)
T 2o0r_A 26 GAVNLGQGFP--DED-G-PPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAA 101 (411)
T ss_dssp TCEESSCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHH
T ss_pred CeeeccCcCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHH
Confidence 5788887653 456 5 899999999999762 111111223455666666665544421 135 89999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.+. ..| .+|++.+.+||+... ++...|...
T Consensus 102 ~~~~~~-----~~g----------------d~Vl~~~~~y~~~~~-~~~~~g~~~------------------------- 134 (411)
T 2o0r_A 102 AVLGLV-----EPG----------------SEVLLIEPFYDSYSP-VVAMAGAHR------------------------- 134 (411)
T ss_dssp HHHHHC-----CTT----------------CEEEEEESCCTTHHH-HHHHTTCEE-------------------------
T ss_pred HHHHhc-----CCC----------------CEEEEeCCCcHhHHH-HHHHcCCEE-------------------------
Confidence 999761 222 379999999998543 222222110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
..++..... ++. ..| .+.+++.+. .++++|+++.. ++..|.+
T Consensus 135 ---~~v~~~~~~-------~~~-~~d------------------~~~l~~~l~--------~~~~~v~l~~~-~nptG~~ 176 (411)
T 2o0r_A 135 ---VTVPLVPDG-------RGF-ALD------------------ADALRRAVT--------PRTRALIINSP-HNPTGAV 176 (411)
T ss_dssp ---EEEECEEET-------TEE-ECC------------------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred ---EEeeccccc-------cCC-CCC------------------HHHHHHhhc--------cCceEEEEeCC-CCCCCCC
Confidence 011111000 000 011 255666663 35788888876 8888876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcc----cCCCCcEEEeccccc-CCccccceeecchHHHhh
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL----LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~----~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~ 710 (818)
. |.+++++|.++|++||+++|+||++++|++.|+. ..... ++....+.+++|.+| .| +++|++++++++++.
T Consensus 177 ~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~ 254 (411)
T 2o0r_A 177 L-SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAG 254 (411)
T ss_dssp C-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHH
Confidence 5 7899999999999999999999999998877752 12211 344455668999998 78 799999999998775
Q ss_pred ccCChH----------------HHH-----------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCch
Q 003466 711 FVGDSK----------------LWD-----------------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 711 l~~~~~----------------~~~-----------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~ 757 (818)
+..... .+. +.+.+.+++.+........|+++.+++.... .
T Consensus 255 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~---~--- 328 (411)
T 2o0r_A 255 VRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPLG---Y--- 328 (411)
T ss_dssp HHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBSSEEEEECGGGT---C---
T ss_pred HHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCeeEEEEEecCCCC---C---
Confidence 532110 110 1122334333321111234667777775310 0
Q ss_pred HHHHHHHHHHH-hCCceEeec------------------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLR-EDGVYMRPL------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 758 ~~a~~~~~~l~-e~Gvlv~p~------------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+++.|+ ++||++.++ .+.+|+.+. .++++|++++++|.+++++.+
T Consensus 329 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 329 DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERPA 397 (411)
T ss_dssp CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC---
T ss_pred CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhccC
Confidence 01456777776 679999862 246899986 489999999999988776543
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=185.43 Aligned_cols=316 Identities=11% Similarity=0.025 Sum_probs=192.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhh------------hcccccCCCCCChhHHHHHHHHHhccC----CCCCCc
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAA------------RFGHVMFPENVYEPALECAELLLQGVG----KGWASR 463 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~------------~~~~~~~~~~~~~~~~eLae~L~~~~~----~~~l~~ 463 (818)
.+||+.++. +.+| +|.+.+++.++.. ....+....+..+....+++.+....+ .. .+.
T Consensus 37 ~~i~l~~~~--~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~~~ 110 (428)
T 1iay_A 37 GVIQMGLAE--NQLC---LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFD-PER 110 (428)
T ss_dssp SBEECSSCC--CCSS---HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCC-TTS
T ss_pred ceeeecccc--chhh---HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC-hhh
Confidence 577777532 3444 6789999886531 111111111233445555555544322 11 368
Q ss_pred EEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccC
Q 003466 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (818)
Q Consensus 464 v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~ 543 (818)
++++++|++|++.+++.+. ..| .+|++.+.+||+.........|...
T Consensus 111 i~~~~G~~~ai~~~~~~~~-----~~g----------------d~Vl~~~p~y~~~~~~~~~~~g~~~------------ 157 (428)
T 1iay_A 111 VVMAGGATGANETIIFCLA-----DPG----------------DAFLVPSPYYPAFNRDLRWRTGVQL------------ 157 (428)
T ss_dssp CEEEEHHHHHHHHHHHHHC-----CTT----------------CEEEEESSCCTTHHHHTTTTTCCEE------------
T ss_pred EEEccChHHHHHHHHHHhC-----CCC----------------CeEEEccCCCcchHHHHHHhcCCEE------------
Confidence 9999999999999999771 222 3799999999985433222222210
Q ss_pred CCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 003466 544 RGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (818)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA 622 (818)
..++..... + | .| .+.+++.+++.. ....++++
T Consensus 158 ----------------~~v~~~~~~--------~--~~~d------------------~~~l~~~l~~~~--~~~~~~~~ 191 (428)
T 1iay_A 158 ----------------IPIHCESSN--------N--FKIT------------------SKAVKEAYENAQ--KSNIKVKG 191 (428)
T ss_dssp ----------------EEECCCTTT--------T--TCCC------------------HHHHHHHHHHHH--HTTCCEEE
T ss_pred ----------------EEeecCCcc--------C--CcCC------------------HHHHHHHHHHHH--hcCCceEE
Confidence 001110000 0 0 01 144555554200 02346777
Q ss_pred EEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhccc-------CCCCc----EEEeccc
Q 003466 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-------GCVPD----IACYGKL 690 (818)
Q Consensus 623 VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~-------gv~PD----ivtlgKg 690 (818)
|++... ++..|.+. |.+++++|.++|++||+++|+||++++|++.|..+ ....+ ++.+| +.+++|+
T Consensus 192 v~l~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~ 269 (428)
T 1iay_A 192 LILTNP-SNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKD 269 (428)
T ss_dssp EEEESS-CTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTT
T ss_pred EEEcCC-CCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhh
Confidence 776654 67778765 88999999999999999999999999976666432 11111 34478 5699999
Q ss_pred cc-CCccccceeec-chHHHhhccC------ChH-------------H-HH--------------HHHHHHHHcCCCeeE
Q 003466 691 LT-GGVIPLAATLA-TNAVFDSFVG------DSK-------------L-WD--------------LELIQQISSHRTVQR 734 (818)
Q Consensus 691 Lg-gGy~PlsAvl~-~~~i~~~l~~------~~~-------------~-~~--------------~~l~~~l~~~~~v~~ 734 (818)
+| .| +++|++++ ++++++.+.. ... . +. +.+.+.+++++ +.-
T Consensus 270 ~g~~G-lr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~ 347 (428)
T 1iay_A 270 MGLPG-FRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVG-IKC 347 (428)
T ss_dssp SSCGG-GCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCB
T ss_pred cCCCC-ceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccc
Confidence 98 78 79999998 6777765421 111 1 10 11233444443 222
Q ss_pred EEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 735 VVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 735 vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+++ .|.++.+++.... ...+...+..+++.|+++ ||++.++ .+.+|+.++ .++++++++++++|++++
T Consensus 348 ~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l 424 (428)
T 1iay_A 348 LKNNAGLFCWMDLRPLL--RESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFV 424 (428)
T ss_dssp CCCSSSSEEEEECGGGC--SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHH
T ss_pred cCCCeeEEEEEechhhc--CCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHH
Confidence 334 5777777775421 011112355788899986 9999974 258999998 689999999999999887
Q ss_pred HH
Q 003466 806 EE 807 (818)
Q Consensus 806 ~~ 807 (818)
++
T Consensus 425 ~~ 426 (428)
T 1iay_A 425 GV 426 (428)
T ss_dssp HT
T ss_pred hc
Confidence 54
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=189.67 Aligned_cols=299 Identities=8% Similarity=-0.028 Sum_probs=188.4
Q ss_pred EEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEe
Q 003466 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467 (818)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~ 467 (818)
.++|.+++ .+.++...+++..++|. .++..+ ...+++++|+++++.. +.++|+
T Consensus 5 ~~~~~~~~----~~~~~~~~~~~~~~~h~-~~~~~~--------------------~~~~~~~~l~~~~~~~--~~v~~~ 57 (379)
T 3ke3_A 5 LRQDIDPN----GLLEYSVVYTDRALNHM-SKAFQE--------------------VMNDLLSNLKTVYNAE--AAVIIP 57 (379)
T ss_dssp ---CCSTT----SCCCCCSSCCTTSCCTT-SHHHHH--------------------HHHHHHHHHHHHHTCS--EEEEEE
T ss_pred hhccCCHH----HHHHHHHhccCCCCCCC-CHHHHH--------------------HHHHHHHHHHHHhCCC--CEEEEc
Confidence 47888998 88888877778788888 665443 3346777788877743 578899
Q ss_pred CChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccccccc-CCCCCCCcCCCCcccCCCc
Q 003466 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGL 546 (818)
Q Consensus 468 ~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~t-g~~~~~~~~~~p~~~~~~~ 546 (818)
+||++|++++++.+ .. ..+||+++.+|||.+...+... |...
T Consensus 58 ~sgt~a~~~~~~~~------~~----------------gd~vi~~~~~~~~~~~~~~~~~~g~~~--------------- 100 (379)
T 3ke3_A 58 GSGTYGMEAVARQL------TI----------------DEDCLIIRNGWFSYRWTQILEKGKFAK--------------- 100 (379)
T ss_dssp SCHHHHHHHHHHHH------CT----------------TCEEEEEECSHHHHHHHHHHHHHCCSS---------------
T ss_pred CChhHHHHHHHHhC------CC----------------CCeEEEEeCCchhHHHHHHHHHhCCCC---------------
Confidence 99999999998654 12 2489999999999764433322 1100
Q ss_pred ccCCCcccccCcceeecCcc----hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 003466 547 FLDPPTVFMYNSKWILSLPE----WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (818)
Q Consensus 547 ~~~~p~~~~~~~~~~v~~P~----~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA 622 (818)
....++.|. .+.. .....| .+.+++.+.. .++.+
T Consensus 101 -----------~~~~~~~~~~g~~~~~~------~~~~~d------------------~~~l~~~i~~-------~~~~~ 138 (379)
T 3ke3_A 101 -----------SSTVLTAERTEDTEAPK------PFAPVD------------------IETAVAKIKE-------DKSAI 138 (379)
T ss_dssp -----------EEEEEECEESSCCSSCC------CEECCC------------------HHHHHHHHHH-------HTCSE
T ss_pred -----------ceEEEeccccccccccC------CCCCCC------------------HHHHHHHHhh-------cCCcE
Confidence 001111111 0000 000111 2556667742 13345
Q ss_pred EEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceee
Q 003466 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702 (818)
Q Consensus 623 VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl 702 (818)
|++..+ .+..|.+. |.+++++|+++|++||+++|+||+++ | +..+..+.+|+...+.+++|+|+|+ ..+|+++
T Consensus 139 v~~~~~-~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~-~g~g~~~ 211 (379)
T 3ke3_A 139 VYAPHV-ETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSST-PCAGLVM 211 (379)
T ss_dssp EEEESE-ETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSC-CCEEEEE
T ss_pred EEEEee-cCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCC-CceEEEE
Confidence 666554 55567665 78899999999999999999999996 4 4566677778765566677999886 4688999
Q ss_pred cchHHHhhccC----------------------C------hH-------------HHH---------------HHHHHHH
Q 003466 703 ATNAVFDSFVG----------------------D------SK-------------LWD---------------LELIQQI 726 (818)
Q Consensus 703 ~~~~i~~~l~~----------------------~------~~-------------~~~---------------~~l~~~l 726 (818)
+++++++.+.. + .. .+. +.+.+.+
T Consensus 212 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l 291 (379)
T 3ke3_A 212 LSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVL 291 (379)
T ss_dssp ECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 99988664421 0 00 011 1123334
Q ss_pred HcCCC--eeE-EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec----------CCEEEEECCCCChHHH
Q 003466 727 SSHRT--VQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYLMCGPCSSPEV 793 (818)
Q Consensus 727 ~~~~~--v~~-vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----------g~~ir~~ppl~~t~ed 793 (818)
++.+. +.. ....+.+..+... + . ...+.+.|.++||++.+. ++.+|+.++..+|++|
T Consensus 292 ~~~g~~~~~~~~~~~~~i~~~~~~-~--------~-~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~d 361 (379)
T 3ke3_A 292 TDKGIESVAAEGFEAPGVVVSYTE-R--------D-DMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTD 361 (379)
T ss_dssp HHTTCCBSBCTTCBCSSEEEEECS-C--------H-HHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTC
T ss_pred HHcCCEecCCccccCceEEEEccC-C--------c-chHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHH
Confidence 44332 111 0012223333221 1 1 112367788999998874 5799999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003466 794 CSQLLLKLYQRLEEFD 809 (818)
Q Consensus 794 Id~~~~~l~~~l~~l~ 809 (818)
|++++++|+++++++.
T Consensus 362 i~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 362 IDGTVERFEKALDEVL 377 (379)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988764
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=181.52 Aligned_cols=301 Identities=13% Similarity=0.053 Sum_probs=191.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
++||+.++.. .+|+ +|.+.+|+.+++++... +....+..+...++++.+.+..+.+ ..+.++++++|++|++.+
T Consensus 42 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~ 117 (389)
T 1o4s_A 42 DVINLTAGEP--DFPT--PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA 117 (389)
T ss_dssp CCEECCCSSC--SSCC--CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHH
Confidence 8999988654 4563 69999999999876321 1111123445555555555433421 136899999999999999
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.+. ..| .+|++.+.+||+.... +...|...
T Consensus 118 ~~~l~-----~~g----------------d~Vl~~~~~~~~~~~~-~~~~g~~~-------------------------- 149 (389)
T 1o4s_A 118 FMALL-----DPG----------------DEVIVFSPVWVSYIPQ-IILAGGTV-------------------------- 149 (389)
T ss_dssp HHHHC-----CTT----------------CEEEEEESCCTTHHHH-HHHTTCEE--------------------------
T ss_pred HHHhC-----CCC----------------CEEEEcCCCchhHHHH-HHHcCCEE--------------------------
Confidence 99761 122 3799999999985533 22222110
Q ss_pred cceeecCcchhhhhcccccccccc-CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFC-SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~n-d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
..++..... .|+ | .+.+++.+. .++++|+++.. ++..|.+
T Consensus 150 --~~v~~~~~~----------~~~~d------------------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~ 190 (389)
T 1o4s_A 150 --NVVETFMSK----------NFQPS------------------LEEVEGLLV--------GKTKAVLINSP-NNPTGVV 190 (389)
T ss_dssp --EEEECCGGG----------TTCCC------------------HHHHHHTCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEecCCcc----------CCCCC------------------HHHHHHhcc--------cCceEEEEcCC-CCCCCCC
Confidence 011110000 000 1 245666553 25778888775 7878876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC--CCc--EEEeccccc-CCccccceeecchHHHhhc
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPD--IACYGKLLT-GGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv--~PD--ivtlgKgLg-gGy~PlsAvl~~~~i~~~l 711 (818)
. |++++++|.++|++||+++|+||++++|...|+......+.- ..| +.+++|.+| .| +++|++++++++++.+
T Consensus 191 ~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l 268 (389)
T 1o4s_A 191 Y-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAV 268 (389)
T ss_dssp C-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHH
Confidence 5 789999999999999999999999998877665333322221 234 458999998 67 7999999999987655
Q ss_pred cCCh--------H----------------------HHHHHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCCCchHHH
Q 003466 712 VGDS--------K----------------------LWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYA 760 (818)
Q Consensus 712 ~~~~--------~----------------------~~~~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a 760 (818)
.... . ...+.+.+.+++++. .-+.. .|.++.+.+. . .+
T Consensus 269 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~-~---------~~ 337 (389)
T 1o4s_A 269 SKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGV-KFVEPEGAFYLFFKVR-G---------DD 337 (389)
T ss_dssp HHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTC-CCCCCSBSSEEEEECS-S---------CH
T ss_pred HHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-eeecCCcceEEEEeCC-C---------CH
Confidence 3211 0 001123344444422 11112 2555555553 1 14
Q ss_pred HHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 761 ~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
..+++.|+ ++||++.+. ++.+|+.++ .++++|++++++|.++++
T Consensus 338 ~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 338 VKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp HHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 56888887 889999874 368999988 389999999999988764
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-18 Score=184.31 Aligned_cols=293 Identities=14% Similarity=0.026 Sum_probs=185.3
Q ss_pred CHHHHHHHHHhhhhccc-ccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhc--cccccc
Q 003466 418 QIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD--HEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~--~G~~~~ 494 (818)
+|++.+|+.+++++... ........+...+++++|+++++.+ .+.++|+++|++|++.|++.++..+..+ .|.
T Consensus 43 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~--- 118 (397)
T 3f9t_A 43 LPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNK-DAYGHIVSGGTEANLMALRCIKNIWREKRRKGL--- 118 (397)
T ss_dssp CTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCT-TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred cHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCC-CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcc---
Confidence 79999999999876422 1110122456678889999988754 3688999999999999999984321110 000
Q ss_pred ccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
......+|++.+.+|++ +..++...|... ..++....+
T Consensus 119 -------~~~~gd~vl~~~~~~~~-~~~~~~~~g~~~----------------------------~~v~~~~~~------ 156 (397)
T 3f9t_A 119 -------SKNEHPKIIVPITAHFS-FEKGREMMDLEY----------------------------IYAPIKEDY------ 156 (397)
T ss_dssp -------CCCSSCEEEEETTCCTH-HHHHHHHHTCEE----------------------------EEECBCTTS------
T ss_pred -------cCCCCeEEEECCcchhH-HHHHHHHcCcee----------------------------EEEeeCCCC------
Confidence 00123467777776666 333333333210 011111000
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
..| .+.+++.+.+ .++++|++++. ++..|.+.+ +++|.++|++||
T Consensus 157 -----~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~ 201 (397)
T 3f9t_A 157 -----TID------------------EKFVKDAVED-------YDVDGIIGIAG-TTELGTIDN----IEELSKIAKENN 201 (397)
T ss_dssp -----SBC------------------HHHHHHHHHH-------SCCCEEEEEBS-CTTTCCBCC----HHHHHHHHHHHT
T ss_pred -----cCC------------------HHHHHHHHhh-------cCCeEEEEECC-CCCCCCCCC----HHHHHHHHHHhC
Confidence 011 2567777763 15667887776 788888765 999999999999
Q ss_pred CcEEEeecccCc--ccCCc---------cchhcccCCCCcEEEecccccCCccccceeecchHH-Hhhc-------cCC-
Q 003466 655 IPVIFDEVFTGF--WRLGV---------ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV-FDSF-------VGD- 714 (818)
Q Consensus 655 ilLI~DEV~TGf--GRtG~---------~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i-~~~l-------~~~- 714 (818)
+++|+||+++++ +.+|+ .+..+. ++.+.+.+++|.+++| .++|+++++++. .+.+ ...
T Consensus 202 ~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 279 (397)
T 3f9t_A 202 IYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCP-IPSGGILFKDIGYKRYLDVDAPYLTETR 279 (397)
T ss_dssp CEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCC-SSCEEEEESSGGGGGGTCEECTTSSSSE
T ss_pred CeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCC-CCceEEEEeCHHHHHhhccCCccccCCC
Confidence 999999999864 34553 333444 6666666788999887 599998886553 3221 110
Q ss_pred ----------hH---------H---------------HHHHHHHHHHcCCC--eeEEEeeeeEEEEEEecCcccCCCchH
Q 003466 715 ----------SK---------L---------------WDLELIQQISSHRT--VQRVVALGTLCAIELQAAGCNAGYGSL 758 (818)
Q Consensus 715 ----------~~---------~---------------~~~~l~~~l~~~~~--v~~vrg~Gl~~~iel~~~~~~~~~~~~ 758 (818)
.. . ..+.+.+.+++++. +.. ..+.++.+.+..
T Consensus 280 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~~~~~---------- 347 (397)
T 3f9t_A 280 QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIE--PILNIVAIEDED---------- 347 (397)
T ss_dssp ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC--CSSSEEEEECTT----------
T ss_pred ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcC--CCccEEEEEeCC----------
Confidence 01 0 01123344444422 221 234444443321
Q ss_pred HHHHHHHHHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 759 ~a~~~~~~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+..+.+.|.++||++.+.. +.+|+.++..+|++|+++++++|+++++
T Consensus 348 -~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 348 -YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp -HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 4568899999999999865 8999999999999999999999998764
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=177.21 Aligned_cols=302 Identities=8% Similarity=-0.014 Sum_probs=198.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc---CCCCC---ChhHHHHHHHHHhccCCCCCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM---FPENV---YEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~---~~~~~---~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA 473 (818)
.++++.++. .++. +|+|.+|+.++++++.... ...+. ++...++.++|+++++....+.++|+++|++|
T Consensus 28 ~~i~l~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a 102 (420)
T 1t3i_A 28 PLVYLDNAA----TSQK-PRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEA 102 (420)
T ss_dssp ECEECBTTT----CCCC-CHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred ceEEecCCc----cCCC-CHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHH
Confidence 677776533 2477 9999999999998753110 00011 34567899999998874113689999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccc--c-ccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG--A-MEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~--a-ls~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++.+++.+ +...-.. ..+|++.+.+||+.... . ....|...
T Consensus 103 ~~~~~~~~-~~~~~~~----------------gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~------------------- 146 (420)
T 1t3i_A 103 INLVAYSW-GMNNLKA----------------GDEIITTVMEHHSNLVPWQMVAAKTGAVL------------------- 146 (420)
T ss_dssp HHHHHHHT-HHHHCCT----------------TCEEEEETTCCGGGTHHHHHHHHHHCCEE-------------------
T ss_pred HHHHHHHh-hhcccCC----------------CCEEEECcchhHHHHHHHHHHHHhcCcEE-------------------
Confidence 99999987 2111111 24799999999985421 1 11111110
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
..++.+..+ ..| .+.+++.+. .++++|+++++ +
T Consensus 147 ---------~~v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~ 179 (420)
T 1t3i_A 147 ---------KFVQLDEQE-----------SFD------------------LEHFKTLLS--------EKTKLVTVVHI-S 179 (420)
T ss_dssp ---------EEECBCTTS-----------SBC------------------HHHHHHHCC--------TTEEEEEEESB-C
T ss_pred ---------EEeccCCCC-----------CcC------------------HHHHHHhhC--------CCceEEEEeCC-c
Confidence 011111000 011 255666663 36789999997 8
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHH
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~ 708 (818)
+..|.+.+ +++|.++|++||+++|+||+++ +|... +....++ +|++++| |.+|+ ..+|+++++++++
T Consensus 180 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~di~~~s~sK~~~~--~g~G~~~~~~~~~ 248 (420)
T 1t3i_A 180 NTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLID--CDWLVASGHKMCAP--TGIGFLYGKEEIL 248 (420)
T ss_dssp TTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHHT--CSEEEEEGGGTTSC--TTCEEEEECHHHH
T ss_pred ccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--CchhhcC--CCEEEEehhhhcCC--CceEEEEEchHHH
Confidence 88898886 8999999999999999999995 54432 1223334 7998777 95543 2488899999987
Q ss_pred hhccCC---------------------------hH-------------HHH---------------HHHHHHHHcCCCee
Q 003466 709 DSFVGD---------------------------SK-------------LWD---------------LELIQQISSHRTVQ 733 (818)
Q Consensus 709 ~~l~~~---------------------------~~-------------~~~---------------~~l~~~l~~~~~v~ 733 (818)
+.+... .. .+. +.+.+.+++.+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 328 (420)
T 1t3i_A 249 EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLR 328 (420)
T ss_dssp HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 755321 00 011 11234455555443
Q ss_pred EEE------eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHH
Q 003466 734 RVV------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVC 794 (818)
Q Consensus 734 ~vr------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edI 794 (818)
-+. +.|.++.+.+... .+..+.+.|.++||++.+. .+.+|+.++..+|++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i 399 (420)
T 1t3i_A 329 LYGPNPKHGDRAALASFNVAGL---------HASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEI 399 (420)
T ss_dssp EESCCGGGSCBCSEEEEEETTB---------CHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHH
T ss_pred EeCCCccccccCCEEEEEECCC---------CHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHH
Confidence 222 2477888876421 1446788899999999875 46899999998999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003466 795 SQLLLKLYQRLEEFD 809 (818)
Q Consensus 795 d~~~~~l~~~l~~l~ 809 (818)
++++++|+++++++.
T Consensus 400 ~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 400 DLFLQSLQATIRFFS 414 (420)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987764
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=182.99 Aligned_cols=286 Identities=13% Similarity=0.095 Sum_probs=193.8
Q ss_pred cCCCCCCHHHHHHHHHhhhhcccccCC---CCC--ChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhh
Q 003466 412 GPDATLQIELARDMGYTAARFGHVMFP---ENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (818)
Q Consensus 412 ~lGh~~hp~V~eAi~~q~~~~~~~~~~---~~~--~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t 486 (818)
..|+. +|+|.+|+.++++...+.... .+. .+...++.++|+++++.+ .+.++|+++|++|++.+++.+ + .
T Consensus 24 ~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~~-~-~- 98 (390)
T 1elu_A 24 GQGIL-PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGCDIVLWGL-D-W- 98 (390)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHHHHHHHHS-C-C-
T ss_pred ccCCC-CHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCC-HHHEEEeCChHHHHHHHHhCC-C-C-
Confidence 36888 899999999999875321100 011 256788999999988743 358999999999999999976 2 1
Q ss_pred hcccccccccCCCccccccceEEEEEcCCCCCCccccc---cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeec
Q 003466 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM---EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (818)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al---s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~ 563 (818)
.. ..+|++.+.+||+...... ...|... ..++
T Consensus 99 -~~----------------gd~vl~~~~~~~~~~~~~~~~~~~~g~~~----------------------------~~v~ 133 (390)
T 1elu_A 99 -HQ----------------GDEILLTDCEHPGIIAIVQAIAARFGITY----------------------------RFFP 133 (390)
T ss_dssp -CT----------------TCEEEEETTCCHHHHHHHHHHHHHHCCEE----------------------------EEEC
T ss_pred -CC----------------CCEEEEecCcccHHHHHHHHHHHHhCcEE----------------------------EEEc
Confidence 11 2479999999998653211 1112110 0111
Q ss_pred Cc--chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHH
Q 003466 564 LP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL 641 (818)
Q Consensus 564 ~P--~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~ 641 (818)
.+ ..+ ..| .+.+++.+. .++++|+++++ ++..|.+.+
T Consensus 134 ~~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~--- 172 (390)
T 1elu_A 134 VAATLNQ-----------GDA------------------AAVLANHLG--------PKTRLVILSHL-LWNTGQVLP--- 172 (390)
T ss_dssp CGGGSSS-----------SCH------------------HHHHHTTCC--------TTEEEEEEESB-CTTTCCBCC---
T ss_pred CCCCCCc-----------cch------------------HHHHHHhcC--------CCceEEEEecc-ccCCceecC---
Confidence 11 000 001 244554442 36889999997 888898886
Q ss_pred HHHHHHHHHH----hcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHHhhccCC-
Q 003466 642 FQRILVKECQ----NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGD- 714 (818)
Q Consensus 642 fl~~LreLc~----~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~~~- 714 (818)
+++|.++|+ +||+++|+||+++ +|.... ......+|+++ ++|.+.|| ..+|++++++++++.+...
T Consensus 173 -~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~~----~~~~~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~ 245 (390)
T 1elu_A 173 -LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLPL----DFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTY 245 (390)
T ss_dssp -HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBCC----CTTTSCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCS
T ss_pred -HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcCC----ChhhcCCCEEEccccccccCC-CceEEEEECHHhHhhcCCcc
Confidence 999999999 9999999999995 665431 11234579887 99988887 5789999999887765421
Q ss_pred ----------------------h----H--------------HH----------------HHHHHHHHHcCCCeeEE---
Q 003466 715 ----------------------S----K--------------LW----------------DLELIQQISSHRTVQRV--- 735 (818)
Q Consensus 715 ----------------------~----~--------------~~----------------~~~l~~~l~~~~~v~~v--- 735 (818)
. . .+ .+.+.+.+++++.+.-+
T Consensus 246 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 325 (390)
T 1elu_A 246 VGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS 325 (390)
T ss_dssp CCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS
T ss_pred ccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc
Confidence 0 0 00 01223445555544333
Q ss_pred EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
++.|.++.+++... ..+..+.+.|.++||++.+.. +.+|+.++..+|++|+++++++|++
T Consensus 326 ~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 326 APQAGLVSFTVDSP--------LGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp CCSSSEEEEEECSS--------SCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred cccccEEEEEcCCC--------CCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 45688888877422 124568888999999999864 8999999999999999999998864
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=181.67 Aligned_cols=294 Identities=11% Similarity=0.014 Sum_probs=190.4
Q ss_pred CCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChh
Q 003466 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGs 471 (818)
.+|+ .+|||.++.. .++ . +|+|.+|+.+++++.+... ..+..+...+|.++|+++++.. .+.++|+++|+
T Consensus 23 ~~~~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~lr~~la~~~g~~-~~~i~~t~g~~ 92 (360)
T 3hdo_A 23 PDIA----SWIKLNTNEN--PYP-P-SPEVVKAILEELGPDGAAL-RIYPSASSQKLREVAGELYGFD-PSWIIMANGSD 92 (360)
T ss_dssp SCCT----TSEECSSCCC--SSC-C-CHHHHHHHHHHHTTTCGGG-GSCCCSSCHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred cccc----ceeeccCCCC--CCC-C-CHHHHHHHHHHHhcccchh-hcCCCCchHHHHHHHHHHhCcC-cceEEEcCCHH
Confidence 3567 8999998543 343 4 8999999999998742111 0122223367888888877632 36899999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCC
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p 551 (818)
+|++.+++.. .+.| .+|++.+.+||+....+.. .|...
T Consensus 93 ~al~~~~~~l-----~~~g----------------d~Vl~~~p~~~~~~~~~~~-~g~~~-------------------- 130 (360)
T 3hdo_A 93 EVLNNLIRAF-----AAEG----------------EEIGYVHPSYSYYGTLAEV-QGARV-------------------- 130 (360)
T ss_dssp HHHHHHHHHH-----CCTT----------------CEEEEESSSCTHHHHHHHH-HTCEE--------------------
T ss_pred HHHHHHHHHH-----hCCC----------------CEEEEcCCChHHHHHHHHH-CCCEE--------------------
Confidence 9999999976 1222 3789999999985533222 22110
Q ss_pred cccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 003466 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (818)
Q Consensus 552 ~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g 631 (818)
..++..+. +. ++++++ ....+ +++++.. ++
T Consensus 131 --------~~v~~~~~-------------------~~---------------~~~l~~-----~~~~~--~v~i~~p-~n 160 (360)
T 3hdo_A 131 --------RTFGLTGD-------------------FR---------------IAGFPE-----RYEGK--VFFLTTP-NA 160 (360)
T ss_dssp --------EEECBCTT-------------------SS---------------BTTCCS-----SBCSS--EEEEESS-CT
T ss_pred --------EEeeCCCC-------------------CC---------------HHHHHh-----hcCCC--EEEEeCC-CC
Confidence 00110000 00 011111 11122 5555554 78
Q ss_pred CCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc-CCccccceeecchHHHhh
Q 003466 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (818)
Q Consensus 632 ~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~ 710 (818)
..|.+.+ .++++++|+++|+++|+||++++|+..+.....+.++....+.+++|.+| +| +++|++++++++++.
T Consensus 161 ptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~ 235 (360)
T 3hdo_A 161 PLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAG-MRIGLAIARPEVIAA 235 (360)
T ss_dssp TTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTT-SCCEEEECCHHHHHH
T ss_pred CCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCc-cceeeEeeCHHHHHH
Confidence 8888886 67899999999999999999998854443333344555556678999997 67 799999999998876
Q ss_pred ccCCh------H--------H----------------HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHH
Q 003466 711 FVGDS------K--------L----------------WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYA 760 (818)
Q Consensus 711 l~~~~------~--------~----------------~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a 760 (818)
+.... . . ..+.+.+.++++ .+..+...|.++.+.+... .+
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~---------~~ 305 (360)
T 3hdo_A 236 LDKIRDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYDVIPSQGNYLFATPPDR---------DG 305 (360)
T ss_dssp HHHHSCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSSEEEEECTTC---------CH
T ss_pred HHHhCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCCccEEEEECCCC---------CH
Confidence 53210 0 0 011234445555 3334456677776655321 25
Q ss_pred HHHHHHHHhCCceEeecC-----CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~p~g-----~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
..+.+.|.++||++++.+ +.+|++.. +++|+|+++++|++..
T Consensus 306 ~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~ 352 (360)
T 3hdo_A 306 KRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIG 352 (360)
T ss_dssp HHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 568889999999998743 78999875 8999999999887664
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-18 Score=182.50 Aligned_cols=301 Identities=12% Similarity=0.034 Sum_probs=187.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+++|.+ +..|+. +|+|.+|+.++++.+... .+..+...+++++|+++++.+ .+.++|+++|++|++.+++
T Consensus 14 ~~i~l~~----~~~~~~-~~~v~~a~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~g~~-~~~v~~~~g~t~a~~~~~~ 84 (359)
T 1svv_A 14 KPYSFVN----DYSVGM-HPKILDLMARDNMTQHAG---YGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACS 84 (359)
T ss_dssp -CEECSC----SCSSCC-CHHHHHHHHHHTTCCCCS---TTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHH
T ss_pred eeEEecC----CCcCCC-CHHHHHHHHHHHhhcccc---ccccHHHHHHHHHHHHHhCCC-CccEEEeCCchHHHHHHHH
Confidence 4566654 346688 999999999999865432 345788899999999988743 3689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
.++ ..| .+|++.+.+||+.... .+...|..
T Consensus 85 ~~~-----~~g----------------d~vl~~~~~~~~~~~~~~~~~~g~~---------------------------- 115 (359)
T 1svv_A 85 LAL-----RPW----------------EAVIATQLGHISTHETGAIEATGHK---------------------------- 115 (359)
T ss_dssp HHC-----CTT----------------EEEEEETTSHHHHSSTTHHHHTTCC----------------------------
T ss_pred HHh-----CCC----------------CEEEEcccchHHHHHHHHHhcCCCe----------------------------
Confidence 871 122 3789999999875432 11111111
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
...++.+ .+ ..| .+.+++.+.+.. ..++.++++|++++. . ..|.+.
T Consensus 116 ~~~v~~~-~~-----------~~d------------------~~~l~~~l~~~~-~~~~~~~~~v~~~~~-~-ptG~~~- 161 (359)
T 1svv_A 116 VVTAPCP-DG-----------KLR------------------VADIESALHENR-SEHMVIPKLVYISNT-T-EVGTQY- 161 (359)
T ss_dssp EEEECCT-TS-----------CCC------------------HHHHHHHHHHSC-STTSCEEEEEEEESS-C-TTSCCC-
T ss_pred eEEEeCC-CC-----------eec------------------HHHHHHHHHHHH-hccCCCceEEEEEcC-C-CCceec-
Confidence 0011111 00 001 255666665310 012346889999985 4 567766
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCc--ccCCccchhcccCCCCcEEEe--cccccCCccccceeecchHHHhhccC-
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVG- 713 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGf--GRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~~~i~~~l~~- 713 (818)
|.+++++|+++|++||+++|+||++++| |+++........+..+|++++ .|. ||....|++++++++++.+..
T Consensus 162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~--g~~~~~g~l~~~~~~~~~~~~~ 239 (359)
T 1svv_A 162 TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA--GGMFGEALIILNDALKPNARHL 239 (359)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT--TCSSCEEEEECSGGGCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC--CCCCceEEEEEcccHHHHHHHH
Confidence 5799999999999999999999999776 666542111111124788765 664 443456778888877553321
Q ss_pred ----C-----hH-------------H----------HHHHHHHHHHcCCCeeEEEeeee-EEEEEEecCcccCCCchHHH
Q 003466 714 ----D-----SK-------------L----------WDLELIQQISSHRTVQRVVALGT-LCAIELQAAGCNAGYGSLYA 760 (818)
Q Consensus 714 ----~-----~~-------------~----------~~~~l~~~l~~~~~v~~vrg~Gl-~~~iel~~~~~~~~~~~~~a 760 (818)
. .. . ..+.+.+.++ .+.+.-+...|. ++.+.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~------------- 305 (359)
T 1svv_A 240 IKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLE-ACGIRLAWPSASNQLFPILE------------- 305 (359)
T ss_dssp HHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHH-HTTCCBSSCCSSSEECBEEE-------------
T ss_pred HhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc-cCCeEEccCCccceEEEEcC-------------
Confidence 0 10 0 0112233342 222211111222 2222221
Q ss_pred HHHHHHHHhC-CceEee----cCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLRED-GVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 761 ~~~~~~l~e~-Gvlv~p----~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
..+++.|+++ ||++.+ ..+.+|+.+++.++++|+++++++|+++++++
T Consensus 306 ~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 2578889999 999864 23689999999999999999999999887654
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-17 Score=182.49 Aligned_cols=313 Identities=10% Similarity=-0.021 Sum_probs=198.2
Q ss_pred EEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhccCCC-CCCcEE
Q 003466 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAY 465 (818)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~ 465 (818)
+++.+|+ ++|||.++.. .++ . +|+|.+|+.++++... .+....+..+...++++.+....+.. ..+.++
T Consensus 38 ~~~~~g~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~ 109 (437)
T 3g0t_A 38 LEKATGT----KFCRMEMGVP--GLP-A-PQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACV 109 (437)
T ss_dssp HHHHHTC----CCEECCCCSC--CSC-C-CHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred HHHhcCC----CEEeccCcCC--CCC-C-CHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEE
Confidence 5566788 9999998764 344 5 8999999999987522 11111122345555555555432211 136899
Q ss_pred EeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccc-eEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCC
Q 003466 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE-LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (818)
Q Consensus 466 f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r-~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~ 544 (818)
|+++|++|++.+++.+ ..+ . ++. .+|++...+||+....+.. .|...
T Consensus 110 ~t~g~t~al~~~~~~l-~~~--~---------------~gd~~~Vl~~~p~~~~~~~~~~~-~g~~~------------- 157 (437)
T 3g0t_A 110 PTVGSMQGCFVSFLVA-NRT--H---------------KNREYGTLFIDPGFNLNKLQCRI-LGQKF------------- 157 (437)
T ss_dssp EESHHHHHHHHHHHHH-TTS--C---------------TTCSCCEEEEESCCHHHHHHHHH-HTCCC-------------
T ss_pred EeCCHHHHHHHHHHHH-hcC--C---------------CCCccEEEEeCCCcHhHHHHHHH-cCCEE-------------
Confidence 9999999999999977 100 1 111 1689999999985433322 22110
Q ss_pred CcccCCCcccccCcceeecC-cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 003466 545 GLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (818)
Q Consensus 545 ~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAV 623 (818)
..++. ++.+ ... .+.+++.++. .++.+|
T Consensus 158 ---------------~~v~~~~~~~--------------------------~~d---~~~l~~~l~~-------~~~~~v 186 (437)
T 3g0t_A 158 ---------------ESFDLFEYRG--------------------------EKL---REKLESYLQT-------GQFCSI 186 (437)
T ss_dssp ---------------EEEEGGGGCT--------------------------THH---HHHHHHHHTT-------TCCCEE
T ss_pred ---------------EEEeecCCCC--------------------------ccC---HHHHHHHHhc-------CCceEE
Confidence 00110 0000 000 2667777742 234555
Q ss_pred EE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc---------chhcc-cCCCCcEEEeccccc
Q 003466 624 II-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---------TTADL-LGCVPDIACYGKLLT 692 (818)
Q Consensus 624 Iv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~---------~a~e~-~gv~PDivtlgKgLg 692 (818)
++ .| ++..|.+. |.+.+++|.++|++||+++|+||++++|...|.. ..... .+....+.+++|.+|
T Consensus 187 ~l~~p--~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 263 (437)
T 3g0t_A 187 IYSNP--NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFS 263 (437)
T ss_dssp EEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTS
T ss_pred EEeCC--CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCC
Confidence 44 66 67778766 7788999999999999999999999876544332 12211 333334558999998
Q ss_pred -CCccccceeecchHHHh-h-----------------ccCChH----------------H----------HH--------
Q 003466 693 -GGVIPLAATLATNAVFD-S-----------------FVGDSK----------------L----------WD-------- 719 (818)
Q Consensus 693 -gGy~PlsAvl~~~~i~~-~-----------------l~~~~~----------------~----------~~-------- 719 (818)
.| +++|++++++++++ . +..... . +.
T Consensus 264 ~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 342 (437)
T 3g0t_A 264 YAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGR 342 (437)
T ss_dssp CGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred Ccc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 78 79999999999988 6 433211 0 11
Q ss_pred --HHHHHHHHcCCCeeEE-------E-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-------CEEE
Q 003466 720 --LELIQQISSHRTVQRV-------V-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-------NVIY 782 (818)
Q Consensus 720 --~~l~~~l~~~~~v~~v-------r-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-------~~ir 782 (818)
+.+.+.++++ .+.-+ . ..|.++.+.+... .+..+++.|.++||++.+.. +.+|
T Consensus 343 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iR 412 (437)
T 3g0t_A 343 KARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM---------DSSKLIEKFVRYGMCAITLKTTGSKRNEAMR 412 (437)
T ss_dssp HHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC---------CHHHHHHHHHHTTEECEESTTTTCCCTTCEE
T ss_pred HHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC---------CHHHHHHHHHHcCeEEeeccccCCCCCCEEE
Confidence 1123344444 23222 3 4566676766511 25578899999999999853 6799
Q ss_pred EECCCCChHHHHHHHHHHHHHHHHH
Q 003466 783 LMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 783 ~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++++.. +++||++++++|.+++++
T Consensus 413 is~~~~-~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 413 ICTSLL-PESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp EECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred EEEecC-CHHHHHHHHHHHHHHHhc
Confidence 999854 999999999999887653
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-17 Score=181.12 Aligned_cols=324 Identities=12% Similarity=0.063 Sum_probs=197.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc---cccCCCCCChhHHHHHHHHHhccCCCC-C-CcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~---~~~~~~~~~~~~~eLae~L~~~~~~~~-l-~~v~f~~SGseA~ 474 (818)
.+||+.+|. ..++ . +|+|.+|+.+++++.. .+....+..+...++++.+.+..+... . +.++|+++|++|+
T Consensus 29 ~~i~l~~g~--~~~~-~-~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 29 DVVNLGQGF--PDFP-P-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp CCEECCCSS--CSSC-C-CHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CceEeCCCC--CCCC-C-CHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 678887764 2333 4 8999999999987632 121112334667777777776554221 1 4799999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
+.+++.+. ..| .+|++...+||+....+. ..|.....-+ . +...
T Consensus 105 ~~~~~~~~-----~~g----------------d~vl~~~p~~~~~~~~~~-~~g~~~~~~~----~--------~~~~-- 148 (422)
T 3fvs_A 105 FTAFQALV-----DEG----------------DEVIIIEPFFDCYEPMTM-MAGGRPVFVS----L--------KPGP-- 148 (422)
T ss_dssp HHHHHHHC-----CTT----------------CEEEEEESCCTTHHHHHH-HTTCEEEEEE----C--------BCCC--
T ss_pred HHHHHHHc-----CCC----------------CEEEEcCCCchhhHHHHH-HcCCEEEEEe----c--------cccc--
Confidence 99999761 122 369999999998543322 2222110000 0 0000
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
...+. .+....+ ..| .+.+++.+. .++++|+++.. ++..|
T Consensus 149 ~~~G~--~~~~~~~-----------~~d------------------~~~l~~~~~--------~~~~~v~~~~p-~nptG 188 (422)
T 3fvs_A 149 IQNGE--LGSSSNW-----------QLD------------------PMELAGKFT--------SRTKALVLNTP-NNPLG 188 (422)
T ss_dssp CCSSS--CCBGGGS-----------BCC------------------HHHHHTTCC--------TTEEEEEEESS-CTTTC
T ss_pred ccccc--cccccCC-----------CCC------------------HHHHHhhcC--------CCceEEEECCC-CCCCC
Confidence 00000 0000000 001 144554442 36788888886 88888
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhccc----CCCCcEEEeccccc-CCccccceeecchHHH
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL----GCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~----gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~ 708 (818)
.+. |++.+++|.++|++||+++|+||++++|++.|+.. ....+ +...++.+++|.+| .| +++|+++++++++
T Consensus 189 ~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~ 266 (422)
T 3fvs_A 189 KVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIM 266 (422)
T ss_dssp CCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHH
T ss_pred cCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHHHH
Confidence 877 88999999999999999999999999998888632 22222 33345668999998 78 7999999999887
Q ss_pred hhccCChH----------------HHH------------------------HHHHHHHHcCCCeeEEEeeeeEEEEEEec
Q 003466 709 DSFVGDSK----------------LWD------------------------LELIQQISSHRTVQRVVALGTLCAIELQA 748 (818)
Q Consensus 709 ~~l~~~~~----------------~~~------------------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~ 748 (818)
+.+..... .+. +.+.+.+++++........|.++.+++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 346 (422)
T 3fvs_A 267 KHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISD 346 (422)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECHH
T ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEEechh
Confidence 75532100 111 11233445553322233456666666643
Q ss_pred CcccCC-----CchHHHHHHHHHHH-hCCceEeec------------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAG-----YGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 749 ~~~~~~-----~~~~~a~~~~~~l~-e~Gvlv~p~------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
...... .+.....+++..|+ ++||++.|+ .+.+|+... .++++|++++++|++++++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 347 FKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV--KDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC--CCHHHHHHHHHHHHHHHHC
T ss_pred hcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence 110000 00011446677665 579999872 368898865 4999999999999988754
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=188.88 Aligned_cols=311 Identities=11% Similarity=0.045 Sum_probs=191.3
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc-CCCC-CChhHHHHHHHHHhcc----CCCCCCcEEE
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPEN-VYEPALECAELLLQGV----GKGWASRAYF 466 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~-~~~~-~~~~~~eLae~L~~~~----~~~~l~~v~f 466 (818)
+|+ ++||+.+|. .++..+|+|++|+.+++++++... ...+ ..+...+|.++|++++ +.. .+.++|
T Consensus 67 ~~~----~~i~l~~g~----~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~-~~~i~~ 137 (449)
T 3qgu_A 67 PDA----KIISLGIGD----TTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRA-ADEIFI 137 (449)
T ss_dssp TTC----CCEECSSCC----CCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCC-GGGEEE
T ss_pred CCC----CEEEeeCCC----CCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCC-HHHEEE
Confidence 567 899998862 333238999999999998754211 1112 1223467777777765 221 368999
Q ss_pred eCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCc
Q 003466 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546 (818)
Q Consensus 467 ~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~ 546 (818)
+++|++|+..+..++ +.| ..|++.+.+||+........+....++.. .++
T Consensus 138 t~G~~~al~~~~~l~------~~g----------------d~Vl~~~p~~~~~~~~~~~~g~~g~~~~~---~~~----- 187 (449)
T 3qgu_A 138 SDGSKCDIARIQMMF------GSK----------------PTVAVQDPSYPVYVDTSVMMGMTGDHNGT---GFD----- 187 (449)
T ss_dssp ESCHHHHHHHHHHHH------CSS----------------SCEEEEESCCTHHHHHHHHHTCSCCBCSS---SBT-----
T ss_pred ccCHHHHHHHHHHHh------CCC----------------CEEEEcCCCChhHHHHHHHcCCccccccc---ccc-----
Confidence 999999999883222 122 37899999999876444333221101100 000
Q ss_pred ccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc
Q 003466 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626 (818)
Q Consensus 547 ~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE 626 (818)
....++. ++. ..+. ..+++ ..++.+|+++
T Consensus 188 -----------~~~~~~~----------------~~~-~~~~-----------------~~~~~------~~~~~~v~l~ 216 (449)
T 3qgu_A 188 -----------GIEYMVC----------------NPD-NHFF-----------------PDLSK------AKRTDIIFFC 216 (449)
T ss_dssp -----------TEEEEEC----------------CGG-GTTC-----------------CCGGG------CCCCSEEEEE
T ss_pred -----------eeEEEec----------------ccc-cCCc-----------------CChhH------cCCCCEEEEe
Confidence 0011111 100 0000 00111 1345677777
Q ss_pred cccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcc----cCCCCcEEEeccccc-CCccccce
Q 003466 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL----LGCVPDIACYGKLLT-GGVIPLAA 700 (818)
Q Consensus 627 PV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~----~gv~PDivtlgKgLg-gGy~PlsA 700 (818)
.. ++..|.+. +.+.+++|.++|++||+++|+||++++|++.|.. ..... .++..++.++||.+| .| +++|+
T Consensus 217 ~p-~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~ 293 (449)
T 3qgu_A 217 SP-NNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG-VRLGW 293 (449)
T ss_dssp SS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTT-CCCEE
T ss_pred CC-CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcc-ceeEE
Confidence 65 78888766 7889999999999999999999999999887642 22222 234455779999998 78 79999
Q ss_pred eecchHHHhh--------cc--------CChH-----------H---------------HHHHHHHHHHcCCCeeEEEe-
Q 003466 701 TLATNAVFDS--------FV--------GDSK-----------L---------------WDLELIQQISSHRTVQRVVA- 737 (818)
Q Consensus 701 vl~~~~i~~~--------l~--------~~~~-----------~---------------~~~~l~~~l~~~~~v~~vrg- 737 (818)
+++++++++. +. .... . ..+.+.+.+++.+ +.-+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~ 372 (449)
T 3qgu_A 294 TVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG-FSVYGGD 372 (449)
T ss_dssp EECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEESS
T ss_pred EecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCC
Confidence 9999887652 11 0100 0 0012334445553 222333
Q ss_pred eeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.|.++.+.+. . ..+..+++.|+++ ||++.|+ .+.+|++ +..++++|++++++|.+++++-
T Consensus 373 ~~~~~~~~~~-~--------~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 373 DAPYIWVGFP-G--------KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp SSSEEEEECT-T--------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC--
T ss_pred CeeEEEEECC-C--------CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHhc
Confidence 3666666664 2 1245678888876 9999873 3789998 4569999999999999887653
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=187.90 Aligned_cols=321 Identities=11% Similarity=0.004 Sum_probs=184.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|||+.+++++ ++|.+|+.+++..... .+ ...+...+|.++|+++++ .++++|++||++|++.|++
T Consensus 44 ~ylD~~~~~~~--------~~v~~a~~~~~~~~~~-~y--~~~~~~~~l~~~la~~~~---~~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 44 VYIDLLTDSGT--------NAMSDHQWAAMITGDE-AY--AGSRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFP 109 (467)
T ss_dssp CSEECSCSSSC--------CCEEHHHHHHHHTCCC-CS--SSCHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHH
T ss_pred eeeecccCcCC--------HHHHHHHHHHHhhccc-cc--ccCccHHHHHHHHHHHcC---CCcEEEcCCcHHHHHHHHH
Confidence 89999886654 6788888877654221 11 234667899999999987 3799999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCC-CCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYH-G~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
++ +.+....|+ . +..||+. .+| +.+..++..+|....... .+.. . +
T Consensus 110 ~~-~~~~~~~Gd------------~-~~~viv~--~~~~~~~~~~~~~~g~~~~~~~--------------~~~~-~-~- 156 (467)
T 1ax4_A 110 VL-LKYKQKEGK------------A-KNPVFIS--NFHFDTTAAHVELNGCKAINIV--------------TEKA-F-D- 156 (467)
T ss_dssp HH-HHHHHHTTC------------C-SSCEEEE--SSCCHHHHHHHHHTTCEEEECB--------------CGGG-G-C-
T ss_pred HH-HHhhccCCC------------c-cceEEEe--ccccchhhHHHhccCCceeccc--------------cccc-c-c-
Confidence 98 433222222 0 0114544 555 555555655543311100 0000 0 0
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
...+.++.. ..| .+.|++.|.. ...+++++|++||+ ++.+|..++
T Consensus 157 ---~~~~~~~~~---------~~d------------------~~~le~~i~~----~~~~~~~~vi~~~~-~np~gG~~~ 201 (467)
T 1ax4_A 157 ---SETYDDWKG---------DFD------------------IKKLKENIAQ----HGADNIVAIVSTVT-CNSAGGQPV 201 (467)
T ss_dssp ---TTSCCTTTT---------CBC------------------HHHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCC
T ss_pred ---ccccCCccc---------ccC------------------HHHHHHHHHh----cCCCCeeEEEEecc-ccCCCccCC
Confidence 000000000 011 2567777763 11247999999997 888755677
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccC---c-------ccCCccchhcccC----CCCcEE--EecccccCCccccceee
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTG---F-------WRLGVETTADLLG----CVPDIA--CYGKLLTGGVIPLAATL 702 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TG---f-------GRtG~~~a~e~~g----v~PDiv--tlgKgLggGy~PlsAvl 702 (818)
+.+++++|+++|++||++||+||++.. + +..|.-.. .++ -.+|++ +++|++ | +|+|+++
T Consensus 202 ~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~~--g-~~~Gg~~ 276 (467)
T 1ax4_A 202 SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK--EVIFDMYKYADALTMSAKKDP--L-LNIGGLV 276 (467)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHH--HHHHHHGGGCSEEEEETTSTT--C-CSSCEEE
T ss_pred ChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchh--hhhhhhccccceEEEeccccC--C-CCcceEE
Confidence 899999999999999999999999742 0 22221100 000 125776 456654 4 4776655
Q ss_pred c-c-h-HHHhhcc------CC----hH-----------HHH---------------HHHHHHHHcC--CCeeEEEeeeeE
Q 003466 703 A-T-N-AVFDSFV------GD----SK-----------LWD---------------LELIQQISSH--RTVQRVVALGTL 741 (818)
Q Consensus 703 ~-~-~-~i~~~l~------~~----~~-----------~~~---------------~~l~~~l~~~--~~v~~vrg~Gl~ 741 (818)
+ + + ++++.+. .. .. .+. +.+.+.|++. +.+...++. .
T Consensus 277 ~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~ 354 (467)
T 1ax4_A 277 AIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGH--A 354 (467)
T ss_dssp EESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSS--E
T ss_pred EeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhCCCCcccCCCce--E
Confidence 4 5 4 6654321 00 00 010 1123334332 222223333 3
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHH-HhCCceEeec-----------C-------CEEEEECC-CCChHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL-----------G-------NVIYLMCG-PCSSPEVCSQLLLKL 801 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l-~e~Gvlv~p~-----------g-------~~ir~~pp-l~~t~edId~~~~~l 801 (818)
+-+.+..-..........+..+++.| .++||.+.+. | +.+||++| .++|++||++++++|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l 434 (467)
T 1ax4_A 355 VFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADAL 434 (467)
T ss_dssp EEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHH
T ss_pred EEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHH
Confidence 33331100000000011356788888 8999999872 2 68999999 569999999999999
Q ss_pred HHHHHHHH
Q 003466 802 YQRLEEFD 809 (818)
Q Consensus 802 ~~~l~~l~ 809 (818)
.+++++++
T Consensus 435 ~~~~~~~~ 442 (467)
T 1ax4_A 435 IGLKEKFA 442 (467)
T ss_dssp HTTHHHHT
T ss_pred HHHHHhhh
Confidence 99987754
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=183.96 Aligned_cols=298 Identities=12% Similarity=0.052 Sum_probs=191.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhh--h-cccccC-----CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChh
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAA--R-FGHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~--~-~~~~~~-----~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGs 471 (818)
-|||+.++ |+. +|+|++|+.+++. + ++.... .....+...++.++|+++++.+ .+.++|+++|+
T Consensus 24 iyld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggt 95 (423)
T 3lvm_A 24 IYLDYSAT------TPV-DPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGAT 95 (423)
T ss_dssp EECBTTTC------CCC-CHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred EeecCCCc------CCC-CHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCChH
Confidence 68887652 577 9999999999988 3 221110 0011345678999999988743 35899999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc--cCCCCCCCcCCCCcccCCCcccC
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~--tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
+|++.|++.+.+++. ..| ..|++.+.+||+.......+ .|...
T Consensus 96 ~a~~~a~~~l~~~~~-~~g----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~~------------------ 140 (423)
T 3lvm_A 96 ESDNLAIKGAANFYQ-KKG----------------KHIITSKTEHKAVLDTCRQLEREGFEV------------------ 140 (423)
T ss_dssp HHHHHHHHHHHHHHT-TTC----------------CEEEEETTSCHHHHHHHHHHHHTTCEE------------------
T ss_pred HHHHHHHHHHHHhhc-cCC----------------CEEEECCccchHHHHHHHHHHHcCCEE------------------
Confidence 999999998744332 222 47888888888754332222 11110
Q ss_pred CCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003466 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~ 629 (818)
..++....+ ..| .+.|++.+. .++++|+++++
T Consensus 141 ----------~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~- 172 (423)
T 3lvm_A 141 ----------TYLAPQRNG-----------IID------------------LKELEAAMR--------DDTILVSIMHV- 172 (423)
T ss_dssp ----------EEECCCTTS-----------CCC------------------HHHHHHHCC--------TTEEEEECCSB-
T ss_pred ----------EEeccCCCC-----------ccC------------------HHHHHHhcC--------CCcEEEEEeCC-
Confidence 011111000 001 255666664 36789999997
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i 707 (818)
++..|.+.+ +++|+++|++||+++|+||+++ +|... .......+|+++++ |.+| + .++|++++++++
T Consensus 173 ~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~----~~~~~~~~di~~~s~sK~~g-~-~g~G~~~~~~~~ 241 (423)
T 3lvm_A 173 NNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKLP----IDLSQLKVDLMSFSGHKIYG-P-KGIGALYVRRKP 241 (423)
T ss_dssp CTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTSCCSEEEEESTTTTS-C-SSCEEEEECBTT
T ss_pred CCCCccccC----HHHHHHHHHHcCCEEEEEhhhh-cCCCC----cChhhcCCCEEEechHHhcC-C-CCeEEEEEeccc
Confidence 888998886 9999999999999999999995 33321 22233458999877 9544 3 468999998877
Q ss_pred HhhccCC-------------hH-------------HHH--------------HHHHHHHHcCCCeeEEEe----eeeEEE
Q 003466 708 FDSFVGD-------------SK-------------LWD--------------LELIQQISSHRTVQRVVA----LGTLCA 743 (818)
Q Consensus 708 ~~~l~~~-------------~~-------------~~~--------------~~l~~~l~~~~~v~~vrg----~Gl~~~ 743 (818)
.+.+... .. .+. +.+.+.+++++.+.-+.. .+.++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 321 (423)
T 3lvm_A 242 RVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILN 321 (423)
T ss_dssp BCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEE
T ss_pred cCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEE
Confidence 6554321 00 010 123344455554432221 235666
Q ss_pred EEEecCcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHH
Q 003466 744 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 744 iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~ 799 (818)
+.+... .+..+.+.|.+ +.+.++ ++.+|+.++..+|++||+++++
T Consensus 322 ~~~~~~---------~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~ 390 (423)
T 3lvm_A 322 VSFNYV---------EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIE 390 (423)
T ss_dssp EEETTS---------CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHH
T ss_pred EEeCCC---------CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHH
Confidence 666321 14456666665 666542 3789999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003466 800 KLYQRLEEFDK 810 (818)
Q Consensus 800 ~l~~~l~~l~~ 810 (818)
+|+++++++.+
T Consensus 391 ~l~~~~~~~~~ 401 (423)
T 3lvm_A 391 LVRKSIGRLRD 401 (423)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhc
Confidence 99999988864
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=188.45 Aligned_cols=321 Identities=12% Similarity=0.008 Sum_probs=184.6
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|||+.+++++ |+|.+|+.+++..... . ....+...+|+++|+++++ .++++|++||++|++.|++
T Consensus 42 ~ylD~~~~~~~--------~~v~~a~~~~l~~~~~-~--y~~~~~~~~l~~~la~~~~---~~~v~~t~~gt~A~~~al~ 107 (467)
T 2oqx_A 42 VFIDLLTDSGT--------GAVTQSMQAAMMRGDE-A--YSGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp CSEECSCCSSC--------SCCCHHHHHHTTSCCC-C--SSSCHHHHHHHHHHHHHHC---CSEEEEEC--CCSHHHHHH
T ss_pred eeEecccCCCc--------HHHHHHHHHHhccCcc-e--eccCchhHHHHHHHHHHhC---cCcEEEcCCcHHHHHHHHH
Confidence 89999876554 7889999888764221 1 1234567899999999987 3799999999999999999
Q ss_pred HHHHHhh-hcccccccccCCCccccccceEEEEEcCCCCCCcccccccc-CCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 480 MAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 480 lA~r~~t-~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~t-g~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++ +..+ ...|. +++..||.. .||+.+..+.... +....... .. ..+ +.
T Consensus 108 ~~-~~~~~~~~G~------------~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~------~~--~~~--~~----- 157 (467)
T 2oqx_A 108 VL-IKKREQEKGL------------DRSKMVAFS--NYFFDTTQGHSQINGCTVRNVY------IK--EAF--DT----- 157 (467)
T ss_dssp HH-HHHHHHHHCC------------CTTTCEEEE--SSCCHHHHHHHHHTTCEEEECB------CT--TTT--CT-----
T ss_pred HH-hccccccCCC------------CccceEEec--ccccccchhhhhccCcceeecc------cc--ccc--cC-----
Confidence 98 3321 11120 110246654 6998764443322 11100000 00 000 00
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
. ...|..+ ..| .+.|++.|.+ .+.+++++|++|++ ++.+|..+
T Consensus 158 ~---~~~~~~~-----------~~d------------------~~~Le~~i~~----~~~~~~~~vi~~~~-~n~~gG~~ 200 (467)
T 2oqx_A 158 G---VRYDFKG-----------NFD------------------LEGLERGIEE----VGPNNVPYIVATIT-SNSAGGQP 200 (467)
T ss_dssp T---SCCTTTT-----------CBC------------------HHHHHHHHHH----HCGGGCCCEEEESS-BCGGGCBC
T ss_pred C---CCCCccC-----------CcC------------------HHHHHHHHHh----cCCCceeEEEEecc-ccCCCCcc
Confidence 0 0000000 011 2567777763 11247899999997 77764566
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccC----------cccCCc---cchhcccCCCCcE--EEecccccCCcccccee-
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGV---ETTADLLGCVPDI--ACYGKLLTGGVIPLAAT- 701 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TG----------fGRtG~---~~a~e~~gv~PDi--vtlgKgLggGy~PlsAv- 701 (818)
++.+++++|+++|++||++||+|++|.. .+..|. .++.+.+ -.+|+ .+++|++| +|+|++
T Consensus 201 ~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~s~sK~~g---~~~Gg~~ 276 (467)
T 2oqx_A 201 VSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLAMSAKKDAM---VPMGGLL 276 (467)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEEESSSTTC---CSSCEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEEEecccccC---CCCceEE
Confidence 6899999999999999999999976632 133343 2221100 11444 57889884 365554
Q ss_pred ecchH----HHhhcc------C----ChH-----------HHH---------------HHHHHHHHcCCCeeEEEeeeeE
Q 003466 702 LATNA----VFDSFV------G----DSK-----------LWD---------------LELIQQISSHRTVQRVVALGTL 741 (818)
Q Consensus 702 l~~~~----i~~~l~------~----~~~-----------~~~---------------~~l~~~l~~~~~v~~vrg~Gl~ 741 (818)
+++++ .+..+. . .+. .+. +.+.+.|++.+. .-+...|.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~ 355 (467)
T 2oqx_A 277 CMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGV-VCQQAGGHA 355 (467)
T ss_dssp EECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred EecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHCCC-eeecCCceE
Confidence 45544 222111 0 000 000 112333444322 111223445
Q ss_pred EEEEEec--CcccCCCchHH-HHHHHHHH-HhCCceEeecC------------------CEEEEECCCC-ChHHHHHHHH
Q 003466 742 CAIELQA--AGCNAGYGSLY-AASLLKKL-REDGVYMRPLG------------------NVIYLMCGPC-SSPEVCSQLL 798 (818)
Q Consensus 742 ~~iel~~--~~~~~~~~~~~-a~~~~~~l-~e~Gvlv~p~g------------------~~ir~~ppl~-~t~edId~~~ 798 (818)
+.+.+.. .. . ..... +..+++.| .++||++.+.+ +.+|+.++.. +|++||++++
T Consensus 356 ~~~~~~~~~~~--~-~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~ 432 (467)
T 2oqx_A 356 AFVDAGKLLPH--I-PADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFII 432 (467)
T ss_dssp EEEEHHHHSTT--S-CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHH
T ss_pred EEEechhhccc--C-CcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHH
Confidence 5555532 10 0 01122 55678888 89999998732 6899999999 9999999999
Q ss_pred HHHHHHHHHHH
Q 003466 799 LKLYQRLEEFD 809 (818)
Q Consensus 799 ~~l~~~l~~l~ 809 (818)
++|+++++++.
T Consensus 433 ~~l~~~l~~~~ 443 (467)
T 2oqx_A 433 EAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHHSGG
T ss_pred HHHHHHHhhhh
Confidence 99999987654
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=178.56 Aligned_cols=281 Identities=12% Similarity=0.088 Sum_probs=186.7
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCC--CcEEEeCChhHHHHHHHHHHHHHhhhcccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA--SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l--~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~ 495 (818)
+|+|.+|+.+++..... ....+...++.++|+++++.+ . +.++|+++|++|++ +++.+ . ..
T Consensus 14 ~~~v~~a~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~-~~~~~v~~~~g~t~al~-~~~~~---~--~~------ 76 (384)
T 3zrp_A 14 KEDVLVAGLENNVGFTS----KEFVEALAYSLKGLRYVMGAS-KNYQPLIIPGGGTSAME-SVTSL---L--KP------ 76 (384)
T ss_dssp CHHHHHHTTCCSCCTTS----HHHHHHHHHHHHHHHHHHTCC-TTSEEEEEESCHHHHHH-HGGGG---C--CT------
T ss_pred CHHHHHHhhcccccccc----HHHHHHHHHHHHHHHHHhCCC-CCCcEEEEcCCcHHHHH-HHHhh---c--CC------
Confidence 79999999887653211 112456778899999988743 2 56999999999999 88754 1 11
Q ss_pred cCCCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 496 LGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
..+||+.+.+|||.....+ ...|.. ...++.+..+
T Consensus 77 ----------gd~vi~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------ 112 (384)
T 3zrp_A 77 ----------NDKILVVSNGVFGDRWEQIFKRYPVN----------------------------VKVLRPSPGD------ 112 (384)
T ss_dssp ----------TCEEEEECSSHHHHHHHHHHTTSSCE----------------------------EEEECCSTTC------
T ss_pred ----------CCEEEEecCCcchHHHHHHHHHcCCc----------------------------EEEecCCCCC------
Confidence 2479999999998543322 111111 0111111100
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
..| .+.+++.+.+ .++++|+++++ ++..|.+.+ +++|.++|++||
T Consensus 113 -----~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~ 157 (384)
T 3zrp_A 113 -----YVK------------------PGEVEEEVRK-------SEYKLVALTHV-ETSTGVREP----VKDVINKIRKYV 157 (384)
T ss_dssp -----CCC------------------HHHHHHHHHH-------SCEEEEEEESE-ETTTTEECC----HHHHHHHHGGGE
T ss_pred -----CCC------------------HHHHHHHHHh-------CCCcEEEEeCC-CCCCceECc----HHHHHHHHHhcC
Confidence 011 2567777762 35889999997 899998886 999999999999
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhc-c-------------------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF-V------------------- 712 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l-~------------------- 712 (818)
+++|+||+++ +|... ..... ..+|+++++ |+++|+ .++|++++++++++.+ .
T Consensus 158 ~~li~D~a~~-~~~~~--~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (384)
T 3zrp_A 158 ELIVVDGVSS-VGAEE--VKAEE--WNVDVYLTASQKALGSA-AGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMR 231 (384)
T ss_dssp EEEEEECTTT-TTTSC--CCTTT--TTCSEEEEETTSTTCCC-SSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHH
T ss_pred CEEEEECccc-ccCcc--ccccc--cCCCEEEecCcccccCC-CceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 9999999995 33221 11122 247888665 999887 5789999999887655 0
Q ss_pred -----------CChH-----------HH---------------HHHHHHHHHcCCC-e-eE--EEeeeeEEEEEEecCcc
Q 003466 713 -----------GDSK-----------LW---------------DLELIQQISSHRT-V-QR--VVALGTLCAIELQAAGC 751 (818)
Q Consensus 713 -----------~~~~-----------~~---------------~~~l~~~l~~~~~-v-~~--vrg~Gl~~~iel~~~~~ 751 (818)
.... .+ .+.+.+.+++++. + .. ....+.++.+.+...
T Consensus 232 ~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 309 (384)
T 3zrp_A 232 GAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKVA-- 309 (384)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSSS--
T ss_pred hhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCCC--
Confidence 1000 00 0122334444421 1 10 112356666666432
Q ss_pred cCCCchHHHHHHHHHHHhCCceEeecC----CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 752 NAGYGSLYAASLLKKLREDGVYMRPLG----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 752 ~~~~~~~~a~~~~~~l~e~Gvlv~p~g----~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.+..+.+.|.++||+++++. +.+|+.++..+|++|+++++++|+++++++.
T Consensus 310 -------~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 310 -------DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp -------CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 25578899999999999876 7899999999999999999999999998764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-17 Score=176.40 Aligned_cols=295 Identities=13% Similarity=0.057 Sum_probs=193.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|+|..+ .++. +|++.+|+.+++.. +.. ....+...+++++|++++|.+..+.+++++||++|++.+++
T Consensus 21 ~~l~~~~------~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~ 89 (386)
T 2dr1_A 21 YKLFTAG------PVAC-FPEVLEIMKVQMFS--HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIR 89 (386)
T ss_dssp SEECCSS------SCCC-CHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHH
T ss_pred ceeecCC------CcCC-cHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHH
Confidence 5666543 4566 89999999887753 111 01256788999999998874212468999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
.+. +.| .+|++.+.+|||.+.. .+...|...
T Consensus 90 ~l~-----~~g----------------d~vl~~~~~~~~~~~~~~~~~~g~~~--------------------------- 121 (386)
T 2dr1_A 90 NGV-----SKG----------------GKVLVTIIGAFGKRYKEVVESNGRKA--------------------------- 121 (386)
T ss_dssp HHS-----CTT----------------CEEEEEESSHHHHHHHHHHHHTTCEE---------------------------
T ss_pred Hhh-----cCC----------------CeEEEEcCCchhHHHHHHHHHhCCce---------------------------
Confidence 761 122 4799999999984221 111112110
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
..++.+..+ ..| .+.|++.+++ ..++++|++++. ++..|.+.+
T Consensus 122 -~~v~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~ 164 (386)
T 2dr1_A 122 -VVLEYEPGK-----------AVK------------------PEDLDDALRK------NPDVEAVTITYN-ETSTGVLNP 164 (386)
T ss_dssp -EEEECCTTC-----------CCC------------------HHHHHHHHHH------CTTCCEEEEESE-ETTTTEECC
T ss_pred -EEEecCCCC-----------CCC------------------HHHHHHHHhc------CCCCcEEEEEee-cCCcchhCC
Confidence 011111000 012 2567777752 235788999987 888898875
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccC---
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG--- 713 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~--- 713 (818)
+++|.++|++||+++|+||+++ +|... +.... ..+|+++.| |.++++ .++|++++++++++.+..
T Consensus 165 ----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~--~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~ 234 (386)
T 2dr1_A 165 ----LPELAKVAKEHDKLVFVDAVSA-MGGAD--IKFDK--WGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPE 234 (386)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTT-BTTBC--CCTTT--TTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTT
T ss_pred ----HHHHHHHHHHcCCeEEEEcccc-ccCcc--ccccc--cCCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCC
Confidence 8999999999999999999995 44332 22222 246998777 999976 368999999988765421
Q ss_pred ---------------------ChH-------------HHH----------------HHHHHHHHcCCCeeEEEe----ee
Q 003466 714 ---------------------DSK-------------LWD----------------LELIQQISSHRTVQRVVA----LG 739 (818)
Q Consensus 714 ---------------------~~~-------------~~~----------------~~l~~~l~~~~~v~~vrg----~G 739 (818)
... .+. +.+.+.+++++. .-+.. .|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~ 313 (386)
T 2dr1_A 235 RGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGL-DILAEPGHESP 313 (386)
T ss_dssp CCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTC-CBSSCTTCBCS
T ss_pred CceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eeCcCccccCC
Confidence 000 110 012233343321 11111 46
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.++.+.+... ..+..+++.|.++||++.+. ++.+|+.++..+|++|+++++++|+++++++.
T Consensus 314 ~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 314 TITAVLTPPG--------IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp SEEEEECCTT--------CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCC--------CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6777776422 12557889999999999873 37999999998999999999999999988764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.7e-17 Score=174.82 Aligned_cols=296 Identities=11% Similarity=0.044 Sum_probs=182.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+|||.++ +.++. +|+|++|+.+++.. +.. .....+...+++++|+++++. -..++|+++|++|++.|++
T Consensus 8 ~~id~~~~----~~~~~-~~~v~~a~~~~~~~--~~~-~~~~~~~~~~l~~~la~~~g~--~~~v~~~~~gt~a~~~al~ 77 (356)
T 1v72_A 8 PALGFSSD----NIAGA-SPEVAQALVKHSSG--QAG-PYGTDELTAQVKRKFCEIFER--DVEVFLVPTGTAANALCLS 77 (356)
T ss_dssp CCCBCSCG----GGCCC-CHHHHHHHHHTTSS--CCC-STTCSHHHHHHHHHHHHHHTS--CCEEEEESCHHHHHHHHHH
T ss_pred ceEeeccC----CccCC-CHHHHHHHHhhccC--ccc-ccccchHHHHHHHHHHHHhCC--CCcEEEeCCccHHHHHHHH
Confidence 68999874 44778 99999999998743 211 112357788999999999873 2358999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccc--cccc--CCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a--ls~t--g~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+ + .. .+.|.....+|+.+..+ +... |...
T Consensus 78 ~~-~----~~-----------------gd~vi~~~~~~~~~~~~~~~~~~~~g~~~------------------------ 111 (356)
T 1v72_A 78 AM-T----PP-----------------WGNIYCHPASHINNDECGAPEFFSNGAKL------------------------ 111 (356)
T ss_dssp TS-C----CT-----------------TEEEEECTTSHHHHSSTTHHHHHTTSCEE------------------------
T ss_pred Hh-c----CC-----------------CCEEEEcCccchhhhhchHHHHHhCCcEE------------------------
Confidence 76 1 11 23444556677765544 3332 2210
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHH-HHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ-NLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~-~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
+.+|.... ..| .+.+++ .+.+.. ..+..++++|++++. +. .|
T Consensus 112 ------~~v~~~~~----------~~d------------------~~~l~~~~i~~~~-~~~~~~~~~v~~~~~-~~-tG 154 (356)
T 1v72_A 112 ------MTVDGPAA----------KLD------------------IVRLRERTREKVG-DVHTTQPACVSITQA-TE-VG 154 (356)
T ss_dssp ------EECCCGGG----------CCC------------------HHHHHHHTTSSTT-CTTSCEEEEEEEESS-CT-TS
T ss_pred ------EEecCCCC----------eEc------------------HHHHHHHhhhcch-hhccCCceEEEEEcC-CC-CC
Confidence 11110000 011 255666 664200 012237899999995 64 77
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCccc--CCccchhcccC--CCCcEEE--ecccccCCccccc--eeecchH
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGVETTADLLG--CVPDIAC--YGKLLTGGVIPLA--ATLATNA 706 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR--tG~~~a~e~~g--v~PDivt--lgKgLggGy~Pls--Avl~~~~ 706 (818)
.+ +|.+++++|.++|++||+++|+||++..++- .|.. ...++ ...|+++ ++|+ | .|+| +++++++
T Consensus 155 ~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g-~~~G~g~~~~~~~ 227 (356)
T 1v72_A 155 SI-YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G-VLAAEAIVLFNTS 227 (356)
T ss_dssp CC-CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T-CSSCEEEEESSGG
T ss_pred cc-CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C-CcCccEEEEECHH
Confidence 65 5899999999999999999999999964311 1211 11112 1356654 6787 3 3888 5666887
Q ss_pred HHhhccC-----C-----hH-------------HHH----------HHHHHHHHcCCCeeEEE-eeeeEEEEEEecCccc
Q 003466 707 VFDSFVG-----D-----SK-------------LWD----------LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCN 752 (818)
Q Consensus 707 i~~~l~~-----~-----~~-------------~~~----------~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~ 752 (818)
+++.+.. + .. .+. +.+.+.+++.+.+.-+. ..+.++.+.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~----- 302 (356)
T 1v72_A 228 LATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----- 302 (356)
T ss_dssp GHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-----
T ss_pred HHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC-----
Confidence 7654311 0 10 000 11233344444332221 12333333331
Q ss_pred CCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 753 AGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 753 ~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
..+++.|.++||++.++ ++.+|+.+++.+|++|+++++++|++++++.
T Consensus 303 --------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 303 --------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp --------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred --------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 15788899999999863 4789999999999999999999999887654
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-16 Score=174.98 Aligned_cols=297 Identities=14% Similarity=0.069 Sum_probs=192.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccC----CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~----~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
.|||+.+ .|+. +|+|.+|+.++++.. +.... .....+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 30 ~yld~~~------~~~~-~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 101 (416)
T 1qz9_A 30 IYLDGNS------LGAR-PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINL 101 (416)
T ss_dssp EECCTTT------SCCC-BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHH
T ss_pred EeecCCC------cCCC-cHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCC-cccEEEeCChhHHH
Confidence 7888754 4678 999999999999753 21110 0012366789999999998753 35899999999999
Q ss_pred HHHHHHHHHHhh-hcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 475 EIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 475 e~ALklA~r~~t-~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
+.|++.+++... +..| .++|.....+|+++..++...... ... |
T Consensus 102 ~~al~~~~~~~~~~~~g----------------d~vii~~~~~~~~~~~~~~~~~~~-~~~----------g-------- 146 (416)
T 1qz9_A 102 FKVLSAALRVQATRSPE----------------RRVIVTETSNFPTDLYIAEGLADM-LQQ----------G-------- 146 (416)
T ss_dssp HHHHHHHHHHHHHHSTT----------------CCEEEEETTSCHHHHHHHHHHHHH-HCS----------S--------
T ss_pred HHHHHhhcccccccCCC----------------CcEEEEcCCCCCchHHHHHHHHHH-hcC----------C--------
Confidence 999998732110 0111 246777888998765543211000 000 0
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
...+.+| + .+.+++.+. .++++|+++++ ++..
T Consensus 147 -----~~~~~v~--------------~--------------------~~~l~~~i~--------~~~~~v~~~~~-~npt 178 (416)
T 1qz9_A 147 -----YTLRLVD--------------S--------------------PEELPQAID--------QDTAVVMLTHV-NYKT 178 (416)
T ss_dssp -----CEEEEES--------------S--------------------GGGHHHHCS--------TTEEEEEEESB-CTTT
T ss_pred -----ceEEEeC--------------c--------------------HHHHHHHhC--------CCceEEEEecc-ccCc
Confidence 0000011 0 033555553 36789999997 8888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCcccc-ceeecchHHHhh
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPL-AATLATNAVFDS 710 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~Pl-sAvl~~~~i~~~ 710 (818)
|.+.+ +++|.++|++||+++|+||+++ +|.... ....+ .+|+++++ |.+++| .++ |++++++++++.
T Consensus 179 G~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~~--~~~~~--~~d~~~~s~~K~l~~g-~~~~g~l~~~~~~~~~ 248 (416)
T 1qz9_A 179 GYMHD----MQALTALSHECGALAIWDLAHS-AGAVPV--DLHQA--GADYAIGCTYKYLNGG-PGSQAFVWVSPQLCDL 248 (416)
T ss_dssp CBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSCC--CHHHH--TCSEEEECSSSTTCCC-TTCCCEEEECTTTTTT
T ss_pred ccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcCC--Chhhc--CCCEEEecCcccCCCC-CCCeEEEEECHHHHhc
Confidence 98876 8999999999999999999995 655432 22233 37998775 999887 476 999999887654
Q ss_pred ccCC-----------------------------hH-------------HH---------------HHHHHHHHHcC-C--
Q 003466 711 FVGD-----------------------------SK-------------LW---------------DLELIQQISSH-R-- 730 (818)
Q Consensus 711 l~~~-----------------------------~~-------------~~---------------~~~l~~~l~~~-~-- 730 (818)
+... .. .+ .+.+.+.|++. +
T Consensus 249 l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 328 (416)
T 1qz9_A 249 VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAH 328 (416)
T ss_dssp SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4320 00 00 01223344432 2
Q ss_pred CeeEEE-----eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECC-CCChHHHHHHHHHHHHH
Q 003466 731 TVQRVV-----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCG-PCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 731 ~v~~vr-----g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~pp-l~~t~edId~~~~~l~~ 803 (818)
.+.-+. ..+.++.+.+.. +..+.+.|.++||++... .+.+|+.++ +.+|++|+++++++|.+
T Consensus 329 g~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~l~~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~ 397 (416)
T 1qz9_A 329 ELTLVTPREHAKRGSHVSFEHPE-----------GYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGE 397 (416)
T ss_dssp CCEECSCSSGGGBCSEEEEECTT-----------HHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CeEEeCCCCHHHcCCEEEEecCC-----------HHHHHHHHHhCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHHH
Confidence 221111 135566665531 456888999999998764 589999997 68999999999999999
Q ss_pred HHHHH
Q 003466 804 RLEEF 808 (818)
Q Consensus 804 ~l~~l 808 (818)
++++.
T Consensus 398 ~~~~~ 402 (416)
T 1qz9_A 398 ILDRK 402 (416)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 98764
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=174.92 Aligned_cols=292 Identities=12% Similarity=0.093 Sum_probs=190.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+.++. +.++ . +|+|++|+.++++...... .+...+|.++|+++++-. .+.++++++|++|++.+++
T Consensus 31 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~-----~~~~~~lr~~la~~~~~~-~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 31 EVIKLASNE--NPFG-T-PPKAIECLRQNANKAHLYP-----DDSMIELKSTLAQKYKVQ-NENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CCEECSSCC--CTTC-S-CHHHHHHHHHHGGGTTSCC-----CTTCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEecCCC--CCCC-C-CHHHHHHHHHHHHhhccCC-----CCChHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 799998854 3466 5 8999999999987543221 222257888888877632 3689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... ..| .+|++...+|++....+ ...|..
T Consensus 101 ~l~-----~~g----------------d~vl~~~~~~~~~~~~~-~~~g~~----------------------------- 129 (365)
T 3get_A 101 SKL-----NSK----------------NAFLQAGVTFAMYEIYA-KQCGAK----------------------------- 129 (365)
T ss_dssp HHC-----CTT----------------CEEEECSSCCTHHHHHH-HHHTCE-----------------------------
T ss_pred HHh-----CCC----------------CEEEEeCCChHHHHHHH-HHcCCE-----------------------------
Confidence 761 222 37888888887644322 222211
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
.+.+| ..+ .+ .. ..+.+++.+. .++.+|+++.. ++..|.+. |
T Consensus 130 -~~~v~--------------~~~--------~~--~~---d~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~-~ 171 (365)
T 3get_A 130 -CYKTQ--------------SIT--------HN--LD---EFKKLYETHK--------DEIKLIFLCLP-NNPLGECL-D 171 (365)
T ss_dssp -EEECS--------------SSS--------CC--HH---HHHHHHHHTT--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred -EEEEe--------------cCC--------CC--CC---CHHHHHHHhC--------CCCCEEEEcCC-CCCCCCCc-C
Confidence 00111 000 00 00 1256666663 45778887654 67778776 6
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcc---cCCcc-chh---cccCCCCcEEEeccccc-CCccccceeecchHHHhhc
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFW---RLGVE-TTA---DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfG---RtG~~-~a~---e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l 711 (818)
.+.++++.++| ++|+++|+||++++|. ..+.. ... ..++....+.+++|.+| .| +++|++++++++++.+
T Consensus 172 ~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 249 (365)
T 3get_A 172 ASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAF 249 (365)
T ss_dssp HHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHH
Confidence 66777777777 6799999999998775 32221 122 22343344558999997 67 7999999999988765
Q ss_pred cCCh------H------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHH
Q 003466 712 VGDS------K------------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 712 ~~~~------~------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
.... . ...+.+.+.++++ .+..+...|.++.+.+... .+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~---------~~~ 319 (365)
T 3get_A 250 YKLRAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSYTNFITYFFDEK---------NST 319 (365)
T ss_dssp HHHSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSSEEEEECSSS---------CHH
T ss_pred HHhcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCeEEEEECCCC---------CHH
Confidence 3210 0 0112234445555 3334456677776666431 155
Q ss_pred HHHHHHHhCCceEeec----CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~----g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+.+.|.++||++.++ .+.+|+... +++|+++++++|++++
T Consensus 320 ~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 320 DLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp HHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 7889999999999985 388999976 8999999999998875
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-16 Score=174.45 Aligned_cols=319 Identities=10% Similarity=0.028 Sum_probs=192.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-CC-CcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~l-~~v~f~~SGseA~e 475 (818)
.+||+..|. ..++ . +|+|.+|+.+++++... +....+..+...++++.+.+..+.. .. +.++++++|++|++
T Consensus 24 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 24 SVVNLGQGF--PDIS-P-PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TSEECSSCC--CCSC-C-CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CeEEecCCC--CCCC-C-CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 677877654 2233 3 89999999999875421 1111123455666666666543321 02 58999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.+. ..| .+|++...+||+.... +...|....
T Consensus 100 ~~~~~~~-----~~g----------------d~vl~~~p~~~~~~~~-~~~~g~~~~----------------------- 134 (410)
T 3e2y_A 100 NSIQGLV-----DPG----------------DEVIIMVPFYDCYEPM-VRMAGAVPV----------------------- 134 (410)
T ss_dssp HHHHHHC-----CTT----------------CEEEEEESCCTTHHHH-HHHTTCEEE-----------------------
T ss_pred HHHHHhc-----CCC----------------CEEEEeCCCchhhHHH-HHHcCCEEE-----------------------
Confidence 9999761 122 3788899999875432 222222110
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+++...... + ....+..+. -+ .+.+++.+. .++++|+++.. ++..|.
T Consensus 135 -----~~~~~~~~~~--g------~~~~~~~~~--~d--------~~~l~~~~~--------~~~~~v~~~~p-~nptG~ 182 (410)
T 3e2y_A 135 -----FIPLRSKPTD--G------MKWTSSDWT--FD--------PRELESKFS--------SKTKAIILNTP-HNPLGK 182 (410)
T ss_dssp -----EEECEECCCC--S------SCCBGGGEE--CC--------HHHHHTTCC--------TTEEEEEEESS-CTTTCC
T ss_pred -----EEeccccccc--c------ccccccCCc--CC--------HHHHHhhcC--------CCceEEEEeCC-CCCCCc
Confidence 0000000000 0 000000000 00 144554442 36888999986 888888
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhccc----CCCCcEEEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL----GCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~----gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. +++.+++|.++|++||+++|+||++++|++.|+.+ ....+ +...++.++||.+| +| +++|++++++++++
T Consensus 183 ~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~ 260 (410)
T 3e2y_A 183 VY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIK 260 (410)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHH
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHH
Confidence 76 78889999999999999999999999998888633 22222 22344568899998 78 79999999998877
Q ss_pred hccCChH----------------HHH------------------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecC
Q 003466 710 SFVGDSK----------------LWD------------------------LELIQQISSHRTVQRVVALGTLCAIELQAA 749 (818)
Q Consensus 710 ~l~~~~~----------------~~~------------------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~ 749 (818)
.+..... .+. +.+.+.+++++........|.++.+++...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 340 (410)
T 3e2y_A 261 HLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSL 340 (410)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECGGG
T ss_pred HHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCccEEEEEEchhh
Confidence 5532100 111 112344555543323345567777776542
Q ss_pred cccCC---CchHHHHHHHHHHH-hCCceEeec------------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 750 GCNAG---YGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 750 ~~~~~---~~~~~a~~~~~~l~-e~Gvlv~p~------------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
..... .+......++..++ ++||++.|+ .+.+|++. .+++++|++++++|.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~--~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 341 GADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCF--IKKDSTLDAAEEIFRA 408 (410)
T ss_dssp CCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEEC--CCCHHHHHHHHHHHHT
T ss_pred hcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEE--cCCHHHHHHHHHHHHh
Confidence 11000 00112345666554 679999872 26788885 4599999999998864
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=182.28 Aligned_cols=305 Identities=12% Similarity=0.065 Sum_probs=181.0
Q ss_pred CCcCccccceeecccccccccCC--CCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCC-C----CCCcE
Q 003466 392 DQKNKFIGQQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK-G----WASRA 464 (818)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lG--h~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~-~----~l~~v 464 (818)
..|+ .+||+.+|.+.+..| +. +|+|.+|+.+++++.....+ .......+|.+.|++++.. + ..+.+
T Consensus 23 ~~~~----~~i~l~~g~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y--~~~~g~~~lr~~la~~~~~~~~~~~~~~~v 95 (396)
T 2q7w_A 23 DERP----GKINLGIGVYKDETGKTPV-LTSVKKAEQYLLENETTKNY--LGIDGIPEFGRCTQELLFGKGSALINDKRA 95 (396)
T ss_dssp ---------CEESSCCSCCCTTSCCCC-CHHHHHHHHHHHHHCCCCCC--CCTTCCHHHHHHHHHHHHCTTCHHHHTTCE
T ss_pred cCCC----CceecccccccCCCCCccC-cHHHHHHHHhhcCcccccCC--CCCCCCHHHHHHHHHHHhcCCCCccccccE
Confidence 3466 899999998777766 56 79999999998765311111 1122234555555554411 0 02578
Q ss_pred EE--eCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCccc
Q 003466 465 YF--SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (818)
Q Consensus 465 ~f--~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~ 542 (818)
+| +++|++|++.+++++ +.+. .| .+|++.+.+||+....+... |...
T Consensus 96 ~~~~~~g~~~a~~~~~~~~-~~~~--~g----------------d~Vl~~~p~y~~~~~~~~~~-g~~~----------- 144 (396)
T 2q7w_A 96 RTAQTPGGTGALRVAADFL-AKNT--SV----------------KRVWVSNPSWPNHKSVFNSA-GLEV----------- 144 (396)
T ss_dssp EEEEESHHHHHHHHHHHHH-HHHS--CC----------------CEEEEEESCCTHHHHHHHHT-TCEE-----------
T ss_pred EEEecccchhhHHHHHHHH-HHhC--CC----------------CEEEEcCCCchhHHHHHHHc-CCce-----------
Confidence 88 999999999999987 3332 22 37999999999865433222 2110
Q ss_pred CCCcccCCCcccccCcceeecCc--chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE
Q 003466 543 GRGLFLDPPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI 620 (818)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~v~~P--~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~i 620 (818)
..++.. +.+ -.| .+.+++.+.+ ...+.
T Consensus 145 -----------------~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~ 173 (396)
T 2q7w_A 145 -----------------REYAYYDAENH-----------TLD------------------FDALINSLNE-----AQAGD 173 (396)
T ss_dssp -----------------EEEECEETTTT-----------EEC------------------HHHHHHHHTT-----CCTTC
T ss_pred -----------------EEEecccCCCC-----------CcC------------------HHHHHHHHHh-----CCCCC
Confidence 001110 000 001 2567777752 22234
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC--ccchhcccCCCCc----EEEeccccc-C
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLLGCVPD----IACYGKLLT-G 693 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG--~~~a~e~~gv~PD----ivtlgKgLg-g 693 (818)
.++++... ++..|.+ .+.+++++|.++|++||+++|+||++++|++.| .++....++..+| +.+++|++| .
T Consensus 174 ~~v~~~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 251 (396)
T 2q7w_A 174 VVLFHGCC-HNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLY 251 (396)
T ss_dssp EEEEECSS-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG
T ss_pred EEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccc
Confidence 55555443 6777775 488999999999999999999999999997765 3334443332334 448999999 7
Q ss_pred Cccccceeec---ch----HHHhhccC-------C-hH--------HH---------H--------------HHHHHHHH
Q 003466 694 GVIPLAATLA---TN----AVFDSFVG-------D-SK--------LW---------D--------------LELIQQIS 727 (818)
Q Consensus 694 Gy~PlsAvl~---~~----~i~~~l~~-------~-~~--------~~---------~--------------~~l~~~l~ 727 (818)
| +++|++++ ++ ++++.+.. . .. .+ . +.+.+.++
T Consensus 252 G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (396)
T 2q7w_A 252 N-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQ 330 (396)
T ss_dssp G-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred c-cccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 69999986 45 45443211 0 10 11 0 11223344
Q ss_pred cCC---CeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 728 SHR---TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 728 ~~~---~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+++ .+.-+. ..|+++.+.+. ...+.+.|.++||++.++ +|+.++. +|++++++++++|++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~~---~Ris~~~-~~~e~i~~~~~~l~~ 394 (396)
T 2q7w_A 331 EKGANRDFSFIIKQNGMFSFSGLT------------KEQVLRLREEFGVYAVAS---GRVNVAG-MTPDNMAPLCEAIVA 394 (396)
T ss_dssp HTTCCSCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTT---CEEEGGG-CCTTTHHHHHHHHHH
T ss_pred hcCCCCCcceecCCCceEEEecCC------------HHHHHHHHHhcCeeecCC---ceEEEee-cCHHHHHHHHHHHHh
Confidence 443 121111 23444333221 124556677899999874 5888875 489999999999987
Q ss_pred H
Q 003466 804 R 804 (818)
Q Consensus 804 ~ 804 (818)
+
T Consensus 395 ~ 395 (396)
T 2q7w_A 395 V 395 (396)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-17 Score=181.23 Aligned_cols=311 Identities=9% Similarity=-0.002 Sum_probs=183.6
Q ss_pred ceeecccccccccCCCC-CCHHHHHHHHHhhhhcccccCCCC-CChhHHHHHHHHHhccCCC-----CCCcEEE--eCCh
Q 003466 400 QQFDACASWWTQGPDAT-LQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKG-----WASRAYF--SDNG 470 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~-~hp~V~eAi~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~~~~-----~l~~v~f--~~SG 470 (818)
.+||+.+|...+..|+. ..|.|.+|+.+++....... .+ ......+|.+.|+++++.. ..+.++| +++|
T Consensus 31 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg 108 (412)
T 1ajs_A 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNH--EYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGG 108 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CceeeccceecCCCCCccccHHHHHHHHHhhhChhhcc--CCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCc
Confidence 89999988765555553 14899999999873211110 11 1222345555555554210 1268999 9999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCCCcCCCCcccCCCcccC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~~~~~~p~~~~~~~~~~ 549 (818)
++|++.+++++ +.+. .|. ...+.+|++...+||+....+... |.. ..
T Consensus 109 ~~a~~~~~~~~-~~~~--~g~-----------~~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~----------------- 156 (412)
T 1ajs_A 109 TGALRIGAEFL-ARWY--NGT-----------NNKDTPVYVSSPTWENHNGVFTTA-GFKDIR----------------- 156 (412)
T ss_dssp HHHHHHHHHHH-HHHS--SSS-----------SCCCSCEEEEESCCTHHHHHHHHT-TCSCEE-----------------
T ss_pred HHHHHHHHHHH-HHhC--cCc-----------CCCCCeEEEcCCCcHHHHHHHHHc-CCceeE-----------------
Confidence 99999999876 3332 120 000137999999999865333222 111 00
Q ss_pred CCcccccCcceeecC--cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 003466 550 PPTVFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~--P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP 627 (818)
.++. ++.+ -.| .+.+++.+.+ ...+..++++..
T Consensus 157 -----------~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~v~~~~ 191 (412)
T 1ajs_A 157 -----------SYRYWDTEKR-----------GLD------------------LQGFLSDLEN-----APEFSIFVLHAC 191 (412)
T ss_dssp -----------EEECEETTTT-----------EEC------------------HHHHHHHHHH-----SCTTCEEEEESS
T ss_pred -----------EEeeecCCCC-----------ccC------------------HHHHHHHHHh-----CCCCcEEEEECC
Confidence 0111 0000 001 2556666753 123445554444
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC---ccchhcccCCCCc----EEEecccccC-Cccccc
Q 003466 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLLGCVPD----IACYGKLLTG-GVIPLA 699 (818)
Q Consensus 628 V~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG---~~~a~e~~gv~PD----ivtlgKgLgg-Gy~Pls 699 (818)
. ++..|.+ ++.+++++|.++|++||+++|+||++++|++.| .++....+...+| +.+++|++|. | +++|
T Consensus 192 p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG 268 (412)
T 1ajs_A 192 A-HNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVG 268 (412)
T ss_dssp S-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEE
T ss_pred C-CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCC-cceE
Confidence 3 5666764 589999999999999999999999999999887 4444443332455 5589999997 8 7999
Q ss_pred eeec---chH----HHhhccC------C--hH--------HH---------H---H-----------HHHHHHHcCC---
Q 003466 700 ATLA---TNA----VFDSFVG------D--SK--------LW---------D---L-----------ELIQQISSHR--- 730 (818)
Q Consensus 700 Avl~---~~~----i~~~l~~------~--~~--------~~---------~---~-----------~l~~~l~~~~--- 730 (818)
++++ +++ +++.+.. . .. .+ . + .+.+.+++.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 348 (412)
T 1ajs_A 269 NLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPG 348 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 9998 776 3332211 0 00 11 1 1 1223344443
Q ss_pred CeeEEEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 731 TVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 731 ~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+.-+.. .|++.-+.+. ...+...+.++||++.+. +|+.... +|++++++++++|+++++++
T Consensus 349 ~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~~---~Ris~~~-~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 349 TWNHITDQIGMFSFTGLN------------PKQVEYLINQKHIYLLPS---GRINMCG-LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CCHHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTT---SEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred CeeEEcCCCceEEEeCCC------------HHHHHHHHHhCCEEecCC---cEEEeee-CCHHHHHHHHHHHHHHHHhc
Confidence 1211122 2333322111 223445566899999875 4777663 58999999999999988653
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=181.10 Aligned_cols=284 Identities=12% Similarity=0.054 Sum_probs=184.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|+|.+|+.+++.. +.. ....+...++.++|+++++.+..+.++|+++|++|++.|++.+. ..
T Consensus 35 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-----~~-------- 97 (393)
T 3kgw_A 35 APRVLAAGSLRMIG--HMQ--KEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-----EP-------- 97 (393)
T ss_dssp CHHHHHHTTCCCCC--TTS--HHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHhcccccC--ccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-----CC--------
Confidence 79999999876532 111 01235667889999998875422358999999999999999761 12
Q ss_pred CCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
..+||+...+|||.... .....|... ..++.+...
T Consensus 98 --------gd~vl~~~~~~~~~~~~~~~~~~g~~~----------------------------~~~~~~~~~-------- 133 (393)
T 3kgw_A 98 --------GDSFLTGTNGIWGMRAAEIADRIGARV----------------------------HQMIKKPGE-------- 133 (393)
T ss_dssp --------TCEEEEEESSHHHHHHHHHHHHTTCEE----------------------------EEEECCTTC--------
T ss_pred --------CCEEEEEeCCchhHHHHHHHHHcCCce----------------------------EEEeCCCCC--------
Confidence 23788888888764321 112222110 011111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+.+ .++++|++++. ++..|.+.+ +++|+++|++||++
T Consensus 134 ---~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 180 (393)
T 3kgw_A 134 ---HYT------------------LQEVEEGLAQ-------HKPVLLFLVHG-ESSTGVVQP----LDGFGELCHRYQCL 180 (393)
T ss_dssp ---CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTCE
T ss_pred ---CCC------------------HHHHHHHHhh-------CCCcEEEEecc-CCcchhhcc----HHHHHHHHHHcCCE
Confidence 011 2567777752 25679999997 899998876 88999999999999
Q ss_pred EEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccCC--------------------
Q 003466 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD-------------------- 714 (818)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~~-------------------- 714 (818)
+|+||+++ +| +..+..+.++ +|+++++ |+++|+ .++|++++++++++.+...
T Consensus 181 li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
T 3kgw_A 181 LLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAP-PGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGC 254 (393)
T ss_dssp EEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTC
T ss_pred EEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCC-CceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhh
Confidence 99999995 33 2233333333 5777666 999887 5799999999987765320
Q ss_pred -----------hH-----------HH---------------HHHHHHHHHcCCC-ee--E-EEeeeeEEEEEEecCcccC
Q 003466 715 -----------SK-----------LW---------------DLELIQQISSHRT-VQ--R-VVALGTLCAIELQAAGCNA 753 (818)
Q Consensus 715 -----------~~-----------~~---------------~~~l~~~l~~~~~-v~--~-vrg~Gl~~~iel~~~~~~~ 753 (818)
.. .+ .+.+.+.+++.+. +. . ....+.+..+.+...
T Consensus 255 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---- 330 (393)
T 3kgw_A 255 EGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAG---- 330 (393)
T ss_dssp SSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTT----
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCC----
Confidence 00 00 0122334444432 10 0 112345666666432
Q ss_pred CCchHHHHHHHHHHHhC-CceEeec-----CCEEEEEC-CCCChHHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~p-pl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+.+.|+++ ||+++++ ++.+|+.+ +..+|++|+++++++|+++++++.
T Consensus 331 ----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 331 ----YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp ----BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred ----CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 1255788899988 9999863 47999998 777899999999999999987653
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=183.21 Aligned_cols=301 Identities=12% Similarity=0.040 Sum_probs=181.5
Q ss_pred ceeecccccccccCC--CCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhcc-CCC-CCCcEEE--eCChhHH
Q 003466 400 QQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV-GKG-WASRAYF--SDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lG--h~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~-~~~-~l~~v~f--~~SGseA 473 (818)
.+||+.+|.+.+..| +. +|+|.+|+.+++++.....+. ......+|.+.|++++ +.+ ..++++| +++|++|
T Consensus 27 ~~i~l~~g~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~--~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a 103 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTPI-MRAVHAAEQRMLETETTKTYA--GLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA 103 (394)
T ss_dssp TCEECCCCSCCCTTSCCCC-CHHHHHHHHHHHHHCCCCCCC--CSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred cccccccceeeCCCCCccC-cHHHHHHHHHhcCCcccCCCC--CCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence 799999988766666 66 899999999987652111110 1112234445554443 210 1368999 9999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
++.+++++ +.+. .| .+|++...+||+....+... |...
T Consensus 104 ~~~~~~~~-~~~~--~g----------------d~vl~~~p~~~~~~~~~~~~-g~~~---------------------- 141 (394)
T 2ay1_A 104 LRQALELA-RMAN--PD----------------LRVFVSDPTWPNHVSIMNFM-GLPV---------------------- 141 (394)
T ss_dssp HHHHHHHH-HHHC--TT----------------CCEEEEESCCHHHHHHHHHH-TCCE----------------------
T ss_pred HHHHHHHH-HhcC--CC----------------CEEEEcCCCChhHHHHHHHc-CCce----------------------
Confidence 99999987 4332 22 36999999999865433322 2110
Q ss_pred cccCcceeecCc--chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 003466 554 FMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (818)
Q Consensus 554 ~~~~~~~~v~~P--~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g 631 (818)
..++.. +.+ -.| .+.+++.+.+ .+.+.+++++... ++
T Consensus 142 ------~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~~~~~~~-~n 180 (394)
T 2ay1_A 142 ------QTYRYFDAETR-----------GVD------------------FEGMKADLAA-----AKKGDMVLLHGCC-HN 180 (394)
T ss_dssp ------EEEECEETTTT-----------EEC------------------HHHHHHHHHT-----CCTTCEEEEESSS-CT
T ss_pred ------EEEecccccCC-----------ccC------------------HHHHHHHHHh-----CCCCCEEEEeCCC-CC
Confidence 001110 000 001 2567777763 2234566776775 78
Q ss_pred CCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC--ccchhccc-CCCCcE---EEeccccc-CCccccceeec-
Q 003466 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLL-GCVPDI---ACYGKLLT-GGVIPLAATLA- 703 (818)
Q Consensus 632 ~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG--~~~a~e~~-gv~PDi---vtlgKgLg-gGy~PlsAvl~- 703 (818)
..|.+. |.+++++|.++|++||+++|+||++++|++.| .......+ ...+|+ .+++|.+| +| +++|++++
T Consensus 181 ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~ 258 (394)
T 2ay1_A 181 PTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLAL 258 (394)
T ss_dssp TTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEEE
T ss_pred CCCCCC-CHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC-CccceEEEE
Confidence 888754 88999999999999999999999999997765 23233322 123453 37899998 78 69999987
Q ss_pred --chHHHh----hcc-------CC-hH--------HHH---------H--------------HHHHHHHcCC---CeeEE
Q 003466 704 --TNAVFD----SFV-------GD-SK--------LWD---------L--------------ELIQQISSHR---TVQRV 735 (818)
Q Consensus 704 --~~~i~~----~l~-------~~-~~--------~~~---------~--------------~l~~~l~~~~---~v~~v 735 (818)
++++++ .+. .. .. .+. + .+.+.+++++ .+.-+
T Consensus 259 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 338 (394)
T 2ay1_A 259 CADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFV 338 (394)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHH
T ss_pred eCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEE
Confidence 565432 221 00 00 110 0 1122232222 12111
Q ss_pred E-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 736 V-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 736 r-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
. ..|+++.+++. ...+.+.|.++||++.++ +|+.++ .++++|+++++++|+++
T Consensus 339 ~~~~g~~~~~~~~------------~~~~~~~l~~~gi~v~~~---~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 339 AEHRGMFSRLGAT------------PEQVKRIKEEFGIYMVGD---SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHCCSSEEECCCC------------HHHHHHHHHHHCEECCTT---CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred cCCceEEEeeCCC------------HHHHHHHHHhCCEEecCC---CeEEee-cCCHhhHHHHHHHHHHc
Confidence 2 22555433321 124566777899999874 578877 57899999999998765
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-16 Score=172.04 Aligned_cols=313 Identities=12% Similarity=0.043 Sum_probs=187.8
Q ss_pred ceeeccccccccc-CCCCCCHHHHHHHHHhhhhcccccC--CCCCChhHHHHHHHHHhc------cC--CCCCCcEEEeC
Q 003466 400 QQFDACASWWTQG-PDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQG------VG--KGWASRAYFSD 468 (818)
Q Consensus 400 ~ylD~~sg~~~~~-lGh~~hp~V~eAi~~q~~~~~~~~~--~~~~~~~~~eLae~L~~~------~~--~~~l~~v~f~~ 468 (818)
.+||+.+|..... -... +|+|.+|+.+++++.....+ ..+..+....+++.+.+. .+ -. .+.+++++
T Consensus 34 ~~i~l~~g~p~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-~~~v~~~~ 111 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLT-SAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-KDNVVLCS 111 (416)
T ss_dssp CCEECCCCCTTTTSCSCC-CHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-GGGEEEES
T ss_pred CeEEecCcCCCcccCCCC-CHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-cceEEEeC
Confidence 6888887765432 2245 89999999999876321111 112334445555555421 00 11 36899999
Q ss_pred ChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCccc
Q 003466 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 469 SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~ 548 (818)
+|++|++.+++.+. ..| .+|++.+.+||+.... +...|...
T Consensus 112 g~~~al~~~~~~l~-----~~g----------------d~vl~~~p~y~~~~~~-~~~~g~~~----------------- 152 (416)
T 1bw0_A 112 GGSHGILMAITAIC-----DAG----------------DYALVPQPGFPHYETV-CKAYGIGM----------------- 152 (416)
T ss_dssp HHHHHHHHHHHHHC-----CTT----------------CEEEEEESCCTHHHHH-HHHTTCEE-----------------
T ss_pred ChHHHHHHHHHHhC-----CCC----------------CEEEEcCCCcHhHHHH-HHHcCcEE-----------------
Confidence 99999999999761 222 3799999999985532 22222110
Q ss_pred CCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 003466 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP 627 (818)
..++..... .| .| .+.+++.+. ....+.++++|
T Consensus 153 -----------~~v~~~~~~----------~~~~d------------------~~~l~~~l~-------~~~~~v~i~~p 186 (416)
T 1bw0_A 153 -----------HFYNCRPEN----------DWEAD------------------LDEIRRLKD-------DKTKLLIVTNP 186 (416)
T ss_dssp -----------EEEEEEGGG----------TTEEC------------------HHHHHHHCC-------TTEEEEEEESS
T ss_pred -----------EEeecCccc----------CCCCC------------------HHHHHHHhc-------cCCeEEEEeCC
Confidence 001100000 00 01 255666664 22334556666
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-----cchhcccCCCCc---EEEeccccc-CCcccc
Q 003466 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-----ETTADLLGCVPD---IACYGKLLT-GGVIPL 698 (818)
Q Consensus 628 V~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-----~~a~e~~gv~PD---ivtlgKgLg-gGy~Pl 698 (818)
++..|.+. |++++++|.++|++||+++|+||++++|.+.|. +.....++..++ +.+++|+++ .| +++
T Consensus 187 --~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr~ 262 (416)
T 1bw0_A 187 --SNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG-WRL 262 (416)
T ss_dssp --CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCC
T ss_pred --CCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCC-ceE
Confidence 57778765 889999999999999999999999999877665 222222222222 347899975 57 799
Q ss_pred ceeecchH--HHhhcc-----------CChH--------HHH------------------HHHHHHHHcCCCeeEEEe-e
Q 003466 699 AATLATNA--VFDSFV-----------GDSK--------LWD------------------LELIQQISSHRTVQRVVA-L 738 (818)
Q Consensus 699 sAvl~~~~--i~~~l~-----------~~~~--------~~~------------------~~l~~~l~~~~~v~~vrg-~ 738 (818)
|+++++++ +++.+. .... .+. +.+.+.+++++.+..+.. .
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 342 (416)
T 1bw0_A 263 GWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRG 342 (416)
T ss_dssp EEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCB
T ss_pred EEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCe
Confidence 99998763 222111 0100 110 122344555555544433 3
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|.++.+.+...... ....+..+++.|+ ++||++.++ .+.+|+.+. +++++|++++++|.+++++.
T Consensus 343 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 343 AMYLMSRIDLEKYR---DIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYREAVERIKAFCQRH 413 (416)
T ss_dssp TTEEEEEECGGGBS---SCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHcC---CCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 66666666432000 0012456777775 889999984 368999984 68999999999999988764
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-16 Score=169.23 Aligned_cols=297 Identities=11% Similarity=0.043 Sum_probs=186.5
Q ss_pred eecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCC
Q 003466 381 SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW 460 (818)
Q Consensus 381 ~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~ 460 (818)
+++|. +++|.+|+ ++|||.++. ..++ . +|++.+|+.+++....... .+...+|.++|+++++..
T Consensus 3 ~~~g~--~~~~~~g~----~~id~~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~-----~~~~~~lr~~la~~~~~~- 66 (350)
T 3fkd_A 3 FGHGD--EGITPLSS----EIVNFSTTV--WTDG-D-KDHLEKHLVENLNCIRHYP-----EPDAGTLRQMLAKRNSVD- 66 (350)
T ss_dssp -------------------CCEECSCCS--CCCS-C-CHHHHHHHHHTGGGGGSCC-----CTTCHHHHHHHHHHTTCC-
T ss_pred ccccc--hHhhhccc----cEEEccCCC--CCCC-C-CHHHHHHHHHhHhHHhcCC-----CCcHHHHHHHHHHHhCcC-
Confidence 45555 58899999 999999864 3455 5 8999999999885443221 222257888888887632
Q ss_pred CCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCc
Q 003466 461 ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540 (818)
Q Consensus 461 l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~ 540 (818)
.+.++|+++|++|++.+++.. . | .+||+...+|++.... +...|..
T Consensus 67 ~~~i~~t~g~~~al~~~~~~l-~------g----------------d~Vi~~~p~~~~~~~~-~~~~g~~---------- 112 (350)
T 3fkd_A 67 NNAILVTNGPTAAFYQIAQAF-R------G----------------SRSLIAIPSFAEYEDA-CRMYEHE---------- 112 (350)
T ss_dssp GGGEEEESHHHHHHHHHHHHT-T------T----------------CEEEEEESCCHHHHHH-HHHTTCE----------
T ss_pred HHHEEEcCCHHHHHHHHHHHH-C------C----------------CEEEEeCCCcHHHHHH-HHHcCCe----------
Confidence 368999999999999999976 1 2 2789999989875422 2222211
Q ss_pred ccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 003466 541 YSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (818)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~ 619 (818)
.+.+| . ++. + .+. ..+
T Consensus 113 --------------------~~~v~--------------~~~~~------------------~----~~~-------~~~ 129 (350)
T 3fkd_A 113 --------------------VCFYP--------------SNEDI------------------G----EAD-------FSN 129 (350)
T ss_dssp --------------------EEEEE--------------TTSCG------------------G----GSC-------CTT
T ss_pred --------------------EEEEe--------------cCCcc------------------c----cCc-------cCC
Confidence 00111 0 000 0 010 124
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch--hcccCCCCcEEEeccccc-CCcc
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPDIACYGKLLT-GGVI 696 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a--~e~~gv~PDivtlgKgLg-gGy~ 696 (818)
+.+|+++.. ++..|.+.+ .+.+++|.++|+++ ++|+||++++|+..|.... ...++....+.+++|.++ .| +
T Consensus 130 ~~~v~i~~p-~nptG~~~~-~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~ 204 (350)
T 3fkd_A 130 MDFCWLCNP-NNPDGRLLQ-RTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPG-L 204 (350)
T ss_dssp CSEEEEESS-CTTTCCCCC-HHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGG-G
T ss_pred CCEEEEeCC-CCCcCCCCC-HHHHHHHHHhCCCC--EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcc-h
Confidence 456666654 788888774 44455555555544 9999999999987776432 222233334458999998 77 7
Q ss_pred ccceeecchHHHhhccCChH------------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEE
Q 003466 697 PLAATLATNAVFDSFVGDSK------------------------------LWDLELIQQISSHRTVQRVVALGTLCAIEL 746 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~~------------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel 746 (818)
++|++++++++++.+..... ...+.+.+.+++++.+.-....|.++.+.+
T Consensus 205 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 284 (350)
T 3fkd_A 205 RIGYIVANKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTFFLLRL 284 (350)
T ss_dssp CCEEEECCHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECCCSSSEEEEEE
T ss_pred heEeEEeCHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECCCCCcEEEEEC
Confidence 99999999999886643211 011234455666766655566677776776
Q ss_pred ecCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
... .+..+++.|.+ +||+++++ .+.+|++.. +++++++++++|++.+++
T Consensus 285 ~~~---------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 285 KKG---------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp SSS---------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred CCC---------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 532 15578889998 99999973 468999865 788999999988877654
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-16 Score=177.61 Aligned_cols=299 Identities=11% Similarity=0.015 Sum_probs=186.9
Q ss_pred CCCCHHHHHHHHHhhhhcccccCCC-CC----ChhHHHHHHHHHhccCCCCC--CcE--EEeCChhHHHHHHHHHHHHHh
Q 003466 415 ATLQIELARDMGYTAARFGHVMFPE-NV----YEPALECAELLLQGVGKGWA--SRA--YFSDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~~~~~~~~~~-~~----~~~~~eLae~L~~~~~~~~l--~~v--~f~~SGseA~e~ALklA~r~~ 485 (818)
|+ ++.+.+++.+++.......... .. .+...+++++|+++++.+ . +.+ +|+++|++|++.|++.+ +..
T Consensus 107 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~-~~~~~v~~~~t~ggt~a~~~al~a~-~~~ 183 (514)
T 3mad_A 107 HG-DEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVTSGGTESLLLAMKTY-RDW 183 (514)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGG-GGTSCCEEEEESSHHHHHHHHHHHH-HHH
T ss_pred CC-CCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCC-CccCCcceEEcCcHHHHHHHHHHHH-HHH
Confidence 35 7888888888776543221111 11 234456667778877632 1 366 99999999999999998 443
Q ss_pred hhc-ccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC
Q 003466 486 SFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (818)
Q Consensus 486 t~~-~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~ 564 (818)
.++ .| ..+..||+...+|++ ...++...|... ..++.
T Consensus 184 g~~~~g-------------~~~d~Vi~~~~~~~~-~~~~~~~~G~~v----------------------------~~v~~ 221 (514)
T 3mad_A 184 ARATKG-------------ITAPEAVVPVSAHAA-FDKAAQYFGIKL----------------------------VRTPL 221 (514)
T ss_dssp HHHHHC-------------CSSCEEEEETTSCTH-HHHHHHHHTCEE----------------------------EEECB
T ss_pred hhhhcC-------------CCCCeEEEeCccchH-HHHHHHHcCCee----------------------------EEeee
Confidence 321 11 123577877777766 333333332210 11111
Q ss_pred cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHH
Q 003466 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (818)
Q Consensus 565 P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~ 644 (818)
...+ ..| .+.|++.|. .++++|++++. ++..|.+.+ ++
T Consensus 222 ~~~~-----------~~d------------------~~~Le~~i~--------~~~~~v~~~~~-~nptG~~~~----l~ 259 (514)
T 3mad_A 222 DADY-----------RAD------------------VAAMREAIT--------PNTVVVAGSAP-GYPHGVVDP----IP 259 (514)
T ss_dssp CTTS-----------CBC------------------HHHHHHHCC--------TTEEEEEEETT-CTTTCCCCC----HH
T ss_pred CCCC-----------CCC------------------HHHHHHHhc--------cCCEEEEEeCC-CCCCccccC----HH
Confidence 1000 011 256777664 36789999997 888898876 89
Q ss_pred HHHHHHHhcCCcEEEeecccCc-----ccCCc---cchhcccCCCCcEEEecccccCCccccceeecchHHHhhcc----
Q 003466 645 ILVKECQNRKIPVIFDEVFTGF-----WRLGV---ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV---- 712 (818)
Q Consensus 645 ~LreLc~~~gilLI~DEV~TGf-----GRtG~---~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~---- 712 (818)
+|+++|++||++||+||+++|| +++|. .+.....|+......++|.+.+| .++|+++++++......
T Consensus 260 ~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~~ 338 (514)
T 3mad_A 260 EIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGA-KGTSVILYRRPDLLHYQYFIA 338 (514)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCC-SSCEEEEESSHHHHTTTCEEE
T ss_pred HHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCC-CCeEEEEEeCHHHhccccccc
Confidence 9999999999999999999876 55665 45555667633334556998887 58999988876553211
Q ss_pred -------------CChH-------------HH---------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcc
Q 003466 713 -------------GDSK-------------LW---------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGC 751 (818)
Q Consensus 713 -------------~~~~-------------~~---------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~ 751 (818)
.+.. .+ .+.+.+.+++.+.+.-+.....++.+.....
T Consensus 339 ~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-- 416 (514)
T 3mad_A 339 ADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVIAVASDEL-- 416 (514)
T ss_dssp SSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSSEEEEECSSS--
T ss_pred cccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeEEEEEeCCCC--
Confidence 0000 00 1123445555554332222233454543211
Q ss_pred cCCCchHHHHHHHHHHHhCCceEeec--CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHHH
Q 003466 752 NAGYGSLYAASLLKKLREDGVYMRPL--GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 752 ~~~~~~~~a~~~~~~l~e~Gvlv~p~--g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.+..+.+.|.++||++... ++.+|++++. ..++++|++++++|+++++++.+
T Consensus 417 -------~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 417 -------NIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp -------CHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2557889999999988542 4789999884 45669999999999999988753
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=167.08 Aligned_cols=299 Identities=12% Similarity=0.056 Sum_probs=189.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCC----CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPE----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~----~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
.|||+.+ .|+. +|+|.+|+.++++.. +...... ...+...++.++|+++++.+ .+.++++++|++|+
T Consensus 3 ~yld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 74 (384)
T 1eg5_A 3 VYFDNNA------TTRV-DDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATESI 74 (384)
T ss_dssp EECBTTT------CCCC-CHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHHHH
T ss_pred EEEecCc------cCCC-CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHH
Confidence 5788765 3578 999999999999762 2111000 01244678999999988743 35899999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc--cccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM--EAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al--s~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
+.+++.+ ..+....| .+|++.+.+||+...... ...|...
T Consensus 75 ~~~~~~~-~~~~~~~g----------------d~vl~~~~~~~~~~~~~~~~~~~g~~~--------------------- 116 (384)
T 1eg5_A 75 NWILKTV-AETFEKRK----------------RTIITTPIEHKAVLETMKYLSMKGFKV--------------------- 116 (384)
T ss_dssp HHHHHHH-HHHTTTTC----------------CEEEECTTSCHHHHHHHHHHHHTTCEE---------------------
T ss_pred HHHHHhh-hhhccCCC----------------CEEEECCCCchHHHHHHHHHHhcCCEE---------------------
Confidence 9999988 32111222 378888888887543221 2222110
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
..++....+ ..| .+.+++.+. .++++|++++. ++.
T Consensus 117 -------~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~np 151 (384)
T 1eg5_A 117 -------KYVPVDSRG-----------VVK------------------LEELEKLVD--------EDTFLVSIMAA-NNE 151 (384)
T ss_dssp -------EECCBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEEEESB-CTT
T ss_pred -------EEEccCCCC-----------ccC------------------HHHHHHHhC--------CCCeEEEEECC-CCC
Confidence 001110000 011 255666663 26788999986 888
Q ss_pred CCcccCCHHHHHHHHHHHHhcC--CcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHH-
Q 003466 633 GGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV- 707 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i- 707 (818)
.|.+.+ +++|.++|++|| +++|+||+++ ||... +.... ..+|++++| |.+|- ..+|++++++++
T Consensus 152 tG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~sK~~g~--~G~G~~~~~~~~~ 220 (384)
T 1eg5_A 152 VGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLEK--LEVDYASFSAHKFHGP--KGVGITYIRKGVP 220 (384)
T ss_dssp TCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCTT--TCCSEEEEEGGGGTSC--TTCEEEEECTTSC
T ss_pred cccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCchh--cCCCEEEecHHHhcCC--CceEEEEEcCCCc
Confidence 898886 899999999999 9999999995 76532 11222 358999877 97542 116888888876
Q ss_pred -HhhccCC---------hH-------------HHH--------------HHHHHHHHcCCCeeEEE----eeeeEEEEEE
Q 003466 708 -FDSFVGD---------SK-------------LWD--------------LELIQQISSHRTVQRVV----ALGTLCAIEL 746 (818)
Q Consensus 708 -~~~l~~~---------~~-------------~~~--------------~~l~~~l~~~~~v~~vr----g~Gl~~~iel 746 (818)
...+... .. .+. +.+.+.+++ +.+.-+. +.+.++.+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~ 299 (384)
T 1eg5_A 221 IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSF 299 (384)
T ss_dssp CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEEC
T ss_pred cccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEe
Confidence 4333211 00 000 112334444 2221111 1345556655
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
... .+..+.+.|.++||++.+. .+.+|+.+...+|++|+++++++|+
T Consensus 300 ~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 370 (384)
T 1eg5_A 300 PNI---------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIE 370 (384)
T ss_dssp TTC---------CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCC---------CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 321 1456788899999999872 2579999988899999999999999
Q ss_pred HHHHHHHH
Q 003466 803 QRLEEFDK 810 (818)
Q Consensus 803 ~~l~~l~~ 810 (818)
++++++.+
T Consensus 371 ~~~~~~~~ 378 (384)
T 1eg5_A 371 EILSFLDL 378 (384)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 99988754
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=175.22 Aligned_cols=290 Identities=16% Similarity=0.089 Sum_probs=189.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCC-cEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~-~v~f~~SGseA~e~AL 478 (818)
.|+|..+ -++. +|++.+|+.+++.. +.. ....+...+++++|++++|.+ .+ .++|+++|++|++.++
T Consensus 35 ~~l~~~~------~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 35 RLLLGPG------PSNA-HPSVLQAMNVSPVG--HLD--PAFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CEECSSS------CCCC-CHHHHHHHSSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHH
T ss_pred ceeccCC------CCCC-CHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCchHHHHHHHH
Confidence 6777543 4577 99999999988764 111 113467789999999988753 35 7999999999999999
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccc-ccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a-ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
+.+. .. ..+|++.+.+||+.++.. +...|..
T Consensus 103 ~~~~-----~~----------------gd~Vl~~~~~~~~~~~~~~~~~~g~~--------------------------- 134 (393)
T 1vjo_A 103 ANAV-----EP----------------GDVVLIGVAGYFGNRLVDMAGRYGAD--------------------------- 134 (393)
T ss_dssp HHHC-----CT----------------TCEEEEEESSHHHHHHHHHHHHTTCE---------------------------
T ss_pred Hhcc-----CC----------------CCEEEEEcCChhHHHHHHHHHHcCCc---------------------------
Confidence 9871 12 237999999999842211 1111111
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
...++.+..+ ..| .+.|++.+.+ .++++|++++. ++..|.+.
T Consensus 135 -~~~v~~~~~~-----------~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~ 176 (393)
T 1vjo_A 135 -VRTISKPWGE-----------VFS------------------LEELRTALET-------HRPAILALVHA-ETSTGARQ 176 (393)
T ss_dssp -EEEEECCTTC-----------CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEEC
T ss_pred -eEEEecCCCC-----------CCC------------------HHHHHHHHhh-------CCceEEEEecc-CCCcceec
Confidence 0111111100 112 2566777752 14568899987 88889887
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccC--
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG-- 713 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~-- 713 (818)
+ +++|.++|++||+++|+||+++ ||.... ......+|+++.| |.++++. ++|++++++++++.+..
T Consensus 177 ~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~----~~~~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~ 246 (393)
T 1vjo_A 177 P----LEGVGELCREFGTLLLVDTVTS-LGGVPI----FLDAWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRR 246 (393)
T ss_dssp C----CTTHHHHHHHHTCEEEEECTTT-TTTSCC----CTTTTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCS
T ss_pred c----HHHHHHHHHHcCCEEEEECCcc-ccCcCC----cccccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccC
Confidence 5 8999999999999999999996 765431 2223468999776 9999885 89999999998765410
Q ss_pred -------------------------C-hH-----------HH-H--------------HHHHHHHHcCCC-eeEEEe--e
Q 003466 714 -------------------------D-SK-----------LW-D--------------LELIQQISSHRT-VQRVVA--L 738 (818)
Q Consensus 714 -------------------------~-~~-----------~~-~--------------~~l~~~l~~~~~-v~~vrg--~ 738 (818)
. .. .+ . +.+.+.+++.+. +....+ .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 326 (393)
T 1vjo_A 247 TKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRL 326 (393)
T ss_dssp SCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBC
T ss_pred CCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccC
Confidence 1 00 10 0 112333444321 111111 2
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEEC-CCCChHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~p-pl~~t~edId~~~~~l~~~l 805 (818)
+.++.+.+... ..+..+++.|.++ ||++.++ .+.+|+.+ +...+++++++++++|.+++
T Consensus 327 ~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 327 PTLTTVCIPDG--------VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp SSEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCC--------CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 34555555321 1245688899988 9999873 47899995 56678889999999998875
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=174.67 Aligned_cols=281 Identities=10% Similarity=0.062 Sum_probs=176.9
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCC-CcEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l-~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
+|+|.+|+.+++.. +.. ....+...+++++|+++++.+.- +.+++++||++|++.+++.+. ..|
T Consensus 31 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-----~~g------ 95 (376)
T 3f0h_A 31 SEEVRAIGAEQVPY--FRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-----TKK------ 95 (376)
T ss_dssp CHHHHHHHTSCCCC--CSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-----CTT------
T ss_pred cHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-----CCC------
Confidence 78999999887642 211 11235667888889888764311 245568899999999999761 222
Q ss_pred CCCccccccceEEEEEcCCCCCCcccccc-ccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~als-~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
.+||+.+.+||+....... ..|... ..++.+..+
T Consensus 96 ----------d~vi~~~~~~~~~~~~~~~~~~g~~~----------------------------~~v~~~~~~------- 130 (376)
T 3f0h_A 96 ----------DKVLVIDGGSFGHRFVQLCEIHEIPY----------------------------VALKLEHGK------- 130 (376)
T ss_dssp ----------CCEEEEESSHHHHHHHHHHHHTTCCE----------------------------EEEECCTTC-------
T ss_pred ----------CeEEEEeCChhhHHHHHHHHHcCCce----------------------------EEEeCCCCC-------
Confidence 3688888888885422111 111110 011111100
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+ ..++++|+++++ ++..|.+.+ +++|+++|++||+
T Consensus 131 ----~~d------------------~~~l~~~~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 175 (376)
T 3f0h_A 131 ----KLT------------------KEKLYEYD--------NQNFTGLLVNVD-ETSTAVLYD----TMMIGEFCKKNNM 175 (376)
T ss_dssp ----CCC------------------HHHHHTTT--------TSCCCEEEEESE-ETTTTEECC----HHHHHHHHHHTTC
T ss_pred ----CCC------------------HHHHHHhh--------ccCceEEEEecc-cCCcceecC----HHHHHHHHHHcCC
Confidence 011 14455433 246788999986 899999886 9999999999999
Q ss_pred cEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC---------------------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD--------------------- 714 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~--------------------- 714 (818)
++|+||+++++++. +..+.+|+...+.+++|+++|+ .+++++++++++++.+...
T Consensus 176 ~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
T 3f0h_A 176 FFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACP-PGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQT 251 (376)
T ss_dssp EEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCC-SSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCC
T ss_pred EEEEEcCccccCcc---ccccccCccEEEecCcccccCC-CceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCC
Confidence 99999999876553 3445566654555677999876 5789999999987755320
Q ss_pred --h------H-------HHHH----------------HHHHHHHcCCC-eeEEEeeeeEEEEEEecCcccCCCchHHHHH
Q 003466 715 --S------K-------LWDL----------------ELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 715 --~------~-------~~~~----------------~l~~~l~~~~~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
. . .+.+ .+.+.+++.+. +..-...+.++.+... . ..+..
T Consensus 252 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~ 322 (376)
T 3f0h_A 252 PFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPT-T--------ANAYD 322 (376)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEES-S--------SCHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCC-C--------CCHHH
Confidence 0 0 0111 11122223321 0000112233333221 1 12567
Q ss_pred HHHHHHhC-CceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 763 LLKKLRED-GVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 763 ~~~~l~e~-Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+.+.|.++ ||+++++ ++.+|+.++..+|++|+++++++|+++++
T Consensus 323 l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 323 IFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp HHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 88899998 9999873 37899999999999999999999998875
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-16 Score=172.12 Aligned_cols=312 Identities=10% Similarity=0.055 Sum_probs=188.4
Q ss_pred ceeecccccccccC-CCCCCHHHHHHHHHhhhh-cccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGP-DATLQIELARDMGYTAAR-FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~l-Gh~~hp~V~eAi~~q~~~-~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~A 477 (818)
.+||+..|.....- .+...+.|.+|+.+..+. ...+....+..+...++++.+....+....+.++++++|++|+..+
T Consensus 39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~ 118 (418)
T 3rq1_A 39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHL 118 (418)
T ss_dssp GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHH
T ss_pred CeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHH
Confidence 56666655331111 122267888888765542 1111112234456667777776654321112899999999999999
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.. -..| ..|++.+.+|++....+. ..|...
T Consensus 119 ~~~l-----~~~g----------------d~Vl~~~p~~~~~~~~~~-~~g~~~-------------------------- 150 (418)
T 3rq1_A 119 IHNY-----TEPG----------------DEVLTADWYWGAYRVICS-DTGRTL-------------------------- 150 (418)
T ss_dssp HHHH-----SCTT----------------CEEEEESSCCTHHHHHHH-HTTCEE--------------------------
T ss_pred HHHh-----cCCC----------------CEEEECCCCchhHHHHHH-HcCCEE--------------------------
Confidence 9865 1222 378888888887553322 222110
Q ss_pred cceeecC-cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCc
Q 003466 558 SKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGM 635 (818)
Q Consensus 558 ~~~~v~~-P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG~ 635 (818)
..+++ +..+ ..| .+.+++.+.+. ..+...++++++ |. ++..|.
T Consensus 151 --~~v~~~~~~~-----------~~d------------------~~~l~~~l~~~---~~~~~~~~vi~~~p~-~NPtG~ 195 (418)
T 3rq1_A 151 --VTYSLFDEHN-----------NFN------------------HEAFQNRVNEL---AAKQTNVVVIFNTPG-NNPTGY 195 (418)
T ss_dssp --EEECSBCTTS-----------SBC------------------HHHHHHHHHHH---HHHCSEEEEEEECSS-CTTTCC
T ss_pred --EEEeeeCCCC-----------CcC------------------HHHHHHHHHHh---hccCCCEEEEEeCCC-CCCCCC
Confidence 00111 0000 011 14555555420 001234466666 64 677887
Q ss_pred ccCCHHHHHHHHHHHH------hcCCcEEEeecccCcccCCc---cchhcccCCCCcE---E--Eeccccc-CCccccce
Q 003466 636 HMVDPLFQRILVKECQ------NRKIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI---A--CYGKLLT-GGVIPLAA 700 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~------~~gilLI~DEV~TGfGRtG~---~~a~e~~gv~PDi---v--tlgKgLg-gGy~PlsA 700 (818)
+. |.+.+++|.++|+ +||+++|+||++++|++.|. .+.....++.+|+ + ++||.+| .| +++|+
T Consensus 196 ~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~ 273 (418)
T 3rq1_A 196 SI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYG-QRVGA 273 (418)
T ss_dssp CC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCS-SCCEE
T ss_pred CC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcC-CcceE
Confidence 66 7777999999999 89999999999999988875 2334445667773 2 7999998 56 79999
Q ss_pred eec---chHHHhhccCC------------hH--------H---------HHH---H-----------HHHHHHcCCCeeE
Q 003466 701 TLA---TNAVFDSFVGD------------SK--------L---------WDL---E-----------LIQQISSHRTVQR 734 (818)
Q Consensus 701 vl~---~~~i~~~l~~~------------~~--------~---------~~~---~-----------l~~~l~~~~~v~~ 734 (818)
+++ ++++++.+... .. . +.+ + +.+.+++++ +.-
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~ 352 (418)
T 3rq1_A 274 MIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG-LPM 352 (418)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 998 88888765321 00 0 111 0 112233322 111
Q ss_pred EEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 735 VVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 735 vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+... |+++-+.+. .+..+++.|.++||++.|+++.+|++.. .+++++|++++++|.++++++.
T Consensus 353 ~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 353 LPYRGGFFITIPTD-----------SANAICEELKKEHIYVIALANGIRIAAC-GIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp CCCCSSSEEEEECT-----------THHHHHHHHHHTTEECEECSSEEEEEGG-GSCHHHHTTHHHHHHHHHHHTT
T ss_pred CCCCceEEEEcCCC-----------CHHHHHHHHHhCCEEEecCCCCeEEEEe-cCCHHHHHHHHHHHHHHHHHHh
Confidence 2222 333323331 1456788899999999998889999855 4799999999999999987653
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=178.59 Aligned_cols=308 Identities=10% Similarity=0.060 Sum_probs=191.2
Q ss_pred ceeecccccccccCCCCCCHHH--HHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhcc-CCCCCCc---EEEeCChh
Q 003466 400 QQFDACASWWTQGPDATLQIEL--ARDMGYTAARFG--HVMFPENVYEPALECAELLLQGV-GKGWASR---AYFSDNGS 471 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V--~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~-~~~~l~~---v~f~~SGs 471 (818)
.+|||.+|..+ .+|+ +|.+ .+++.+++++.. .+....+..+....+++.+.+.. +.. .+. ++++++|+
T Consensus 48 ~~i~l~~g~~~-~~~~--~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~-~~~~~~i~~t~g~~ 123 (430)
T 2x5f_A 48 TTYNATIGMAT-NKDG--KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELS-IDNMSRPIVTNALT 123 (430)
T ss_dssp CSEECCCSSCE-ETTE--ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCC-GGGBCCCEEESHHH
T ss_pred CcEEeeeeecc-CCCC--chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccC-CCccceEEEcCCch
Confidence 78999887654 5774 5667 888888775411 11111122334444444443221 321 256 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCC
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p 551 (818)
+|++.+++... ..| .+|++.+.+||+....+....|...
T Consensus 124 ~al~~~~~~l~-----~~g----------------d~Vl~~~p~y~~~~~~~~~~~g~~~-------------------- 162 (430)
T 2x5f_A 124 HGLSLVGDLFV-----NQD----------------DTILLPEHNWGNYKLVFNTRNGANL-------------------- 162 (430)
T ss_dssp HHHHHHHHHHC-----CTT----------------CEEEEESSCCTHHHHHHTTTTCCEE--------------------
T ss_pred HHHHHHHHHHh-----CCC----------------CEEEEcCCcCccHHHHHHHhcCCeE--------------------
Confidence 99999999761 222 3799999999986533222011110
Q ss_pred cccccCcceeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEcccc
Q 003466 552 TVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVV 629 (818)
Q Consensus 552 ~~~~~~~~~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~ 629 (818)
..++... .+ ..|+ +.+++.+.. .+.++.+ ++.+|
T Consensus 163 --------~~~~~~~~~~-----------~~d~------------------~~l~~~l~~-----~~~~~~~v~i~~p-- 198 (430)
T 2x5f_A 163 --------QTYPIFDKDG-----------HYTT------------------DSLVEALQS-----YNKDKVIMILNYP-- 198 (430)
T ss_dssp --------EEECCBCTTS-----------CBCS------------------HHHHHHHHH-----CCSSEEEEEECSS--
T ss_pred --------EEEeccCccC-----------CcCH------------------HHHHHHHHh-----cCCCCEEEEEcCC--
Confidence 0011100 00 0111 456667753 1234555 55556
Q ss_pred ccCCCcccCCHHHHHHHHHHHHh-----cCCcEEEeecccCcccCCccc-h-h-cccCCCCc------EEEeccccc-CC
Q 003466 630 HAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVET-T-A-DLLGCVPD------IACYGKLLT-GG 694 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~-----~gilLI~DEV~TGfGRtG~~~-a-~-e~~gv~PD------ivtlgKgLg-gG 694 (818)
++..|.+. |.+++++|.++|++ ||+++|+||++++|.+.|..+ . . ...+..++ +.+++|.+| .|
T Consensus 199 ~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 277 (430)
T 2x5f_A 199 NNPTGYTP-THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWG 277 (430)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGG
T ss_pred CCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCC
Confidence 67778754 88999999999999 999999999999997777532 2 1 22244455 458999998 77
Q ss_pred ccccceeec---chHHHhhccC--------C----hH--------HHH------HH--------------HHHHHHcC--
Q 003466 695 VIPLAATLA---TNAVFDSFVG--------D----SK--------LWD------LE--------------LIQQISSH-- 729 (818)
Q Consensus 695 y~PlsAvl~---~~~i~~~l~~--------~----~~--------~~~------~~--------------l~~~l~~~-- 729 (818)
+++|++++ ++++++.+.. . .. .+. ++ +.+.++++
T Consensus 278 -~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 356 (430)
T 2x5f_A 278 -FRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQY 356 (430)
T ss_dssp -GCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred -CCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 79999999 9888765431 0 00 121 11 11223311
Q ss_pred C-CeeEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHh-CCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 730 R-TVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 730 ~-~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+ .+..+... |+++.+.+. . ..+..+++.|.+ +||++.|+ .+.+|+.++. .++++|++++++|.+++
T Consensus 357 ~~g~~~~~~~~g~~~~~~~~-~--------~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~~l 426 (430)
T 2x5f_A 357 HSHWQAYDFNSGYFMAIKVH-D--------VDPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAKAI 426 (430)
T ss_dssp TTTEEECCCCBSSEEEEEES-S--------SCHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHHHH
T ss_pred CCCceeeCCCceEEEEeCCC-C--------CCHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 1 23333333 455667775 2 124568888997 99999996 4789999986 48999999999999998
Q ss_pred HHH
Q 003466 806 EEF 808 (818)
Q Consensus 806 ~~l 808 (818)
+++
T Consensus 427 ~~~ 429 (430)
T 2x5f_A 427 DDL 429 (430)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=176.77 Aligned_cols=294 Identities=11% Similarity=0.021 Sum_probs=181.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhh-cccc-cCCCC--CChhHHHHH----HHHHhccCCCCCCcEEEeCChh
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAAR-FGHV-MFPEN--VYEPALECA----ELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~-~~~~-~~~~~--~~~~~~eLa----e~L~~~~~~~~l~~v~f~~SGs 471 (818)
+|||+.++... - +|+|.+|+.+++++ +.+. ..... ..+....++ ++|+++++.. ...++++||+
T Consensus 24 ~~i~~~~~~~~-----~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~--~~~i~~~sGt 95 (407)
T 2dkj_A 24 EGLELIASENF-----V-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA--WANVQPHSGS 95 (407)
T ss_dssp TSEECCTTCCC-----C-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHH
T ss_pred cceeeccCCCC-----C-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC--cceEEecchH
Confidence 78998876532 2 79999999999975 3221 10001 123222333 4788888742 2336778999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc--cccccccCCCCCCCcCCCCcccCCCcccC
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT--LGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t--~~als~tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
+|++.|++.+. ..| .+|++.+.+||+.. ..++...|...
T Consensus 96 ~a~~~~~~~~~-----~~g----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~~------------------ 136 (407)
T 2dkj_A 96 QANMAVYMALM-----EPG----------------DTLMGMDLAAGGHLTHGSRVNFSGKLY------------------ 136 (407)
T ss_dssp HHHHHHHHHHC-----CTT----------------CEEEEECGGGTCCGGGTCTTSHHHHHS------------------
T ss_pred HHHHHHHHHhc-----CCC----------------CEEEEecccccCccchHHHHHhcCceE------------------
Confidence 99999999871 122 37888888887753 22222222110
Q ss_pred CCcccccCcceeecCc---chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-
Q 003466 550 PPTVFMYNSKWILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII- 625 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P---~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv- 625 (818)
..++++ +.+ ..| .+.+++.+.. .++++|++
T Consensus 137 ----------~~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-------~~~~~v~~~ 170 (407)
T 2dkj_A 137 ----------KVVSYGVRPDTE-----------LID------------------LEEVRRLALE-------HRPKVIVAG 170 (407)
T ss_dssp ----------EEEEECCCTTTS-----------SCC------------------HHHHHHHHHH-------HCCSEEEEC
T ss_pred ----------EEEecCCCcccC-----------ccC------------------HHHHHHHHhh-------cCCeEEEEe
Confidence 000000 000 112 2566677752 13567777
Q ss_pred ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC-cccCCccchhcccCCCCcEE--EecccccCCccccceee
Q 003466 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATL 702 (818)
Q Consensus 626 EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG-fGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl 702 (818)
+|. ++ ... + +++|.++|++||+++|+||+|++ +...|.... .++ .+|++ +++|+|+|+ .+|+++
T Consensus 171 ~p~-~~---~~~-~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~g~--~~G~~~ 237 (407)
T 2dkj_A 171 ASA-YP---RFW-D---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLRGP--RGGLIL 237 (407)
T ss_dssp CSS-CC---SCC-C---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGCCC--SCEEEE
T ss_pred ccc-cC---CCC-C---HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCCCC--CceEEE
Confidence 786 43 333 2 89999999999999999999975 544554321 112 27888 899999975 479999
Q ss_pred cc-hHHHhhccCC-------h--H-----------HH---------------HHHHHHHHHcCCCeeEE--EeeeeEEEE
Q 003466 703 AT-NAVFDSFVGD-------S--K-----------LW---------------DLELIQQISSHRTVQRV--VALGTLCAI 744 (818)
Q Consensus 703 ~~-~~i~~~l~~~-------~--~-----------~~---------------~~~l~~~l~~~~~v~~v--rg~Gl~~~i 744 (818)
++ +++++.+... . . .+ .+.+.+.|++.+. .-+ ++.|.++.+
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~ 316 (407)
T 2dkj_A 238 SNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGY-RIVTGGTDNHLFLV 316 (407)
T ss_dssp ESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC-EEGGGSCSSSEEEE
T ss_pred ECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCc-eeecCCCCceEEEE
Confidence 99 7887654211 0 0 00 0122334444432 111 346778888
Q ss_pred EEecCcccCCCchHHHHHHHHHHHhCCceEeec-----------CCEEEEECCC----CChHHHHHHHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGP----CSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----------g~~ir~~ppl----~~t~edId~~~~~l~~~l~~ 807 (818)
++.... ..+..+.+.|.++||++.+. .+.+|+.++. .+|++|+++++++|++++++
T Consensus 317 ~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 317 DLRPKG-------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp ECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ECcccC-------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 775321 11456788899999999873 3579999876 38899999999999999877
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-15 Score=168.77 Aligned_cols=253 Identities=12% Similarity=0.098 Sum_probs=166.8
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+|+++|+++++. +..++++||++|++.|++.+. +. ..+|++.+.+||+.
T Consensus 49 ~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~~~~~~~-----~~----------------g~~vl~~~~~~~~~ 104 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL-----KP----------------GDLLVAPHDCYGGS 104 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEecCCcHhH
Confidence 4567788999999999874 356666899999999999761 11 24789999999873
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. ..+...... .+ ...+.+| .+|
T Consensus 105 ~-~~~~~~~~~-------------~g-------------~~~~~~~--------------~~d----------------- 126 (386)
T 1cs1_A 105 Y-RLFDSLAKR-------------GC-------------YRVLFVD--------------QGD----------------- 126 (386)
T ss_dssp H-HHHHHHHTT-------------TS-------------CEEEEEC--------------TTC-----------------
T ss_pred H-HHHHHHHHh-------------cC-------------CEEEEeC--------------CCC-----------------
Confidence 2 221100000 00 0000011 112
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. +++++|+++++ ++..|.+.+ +++|+++|++||+++|+||+++++... ... .++
T Consensus 127 -~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~-~~~---~~~ 188 (386)
T 1cs1_A 127 -EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ-NPL---ALG 188 (386)
T ss_dssp -HHHHHHHHH--------TCCSEEEEECS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC-CGG---GGT
T ss_pred -HHHHHHhhc--------cCCcEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc---ccC
Confidence 256677775 25689999997 899998875 999999999999999999999877443 211 234
Q ss_pred CCCcEE--EecccccCCcccc-ceeecch-HHHhhccCC--------hH-----------HH---H-------HHHHHHH
Q 003466 680 CVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSFVGD--------SK-----------LW---D-------LELIQQI 726 (818)
Q Consensus 680 v~PDiv--tlgKgLggGy~Pl-sAvl~~~-~i~~~l~~~--------~~-----------~~---~-------~~l~~~l 726 (818)
+|++ +++|.++++..++ |++++++ ++++.+... .. .+ . +.+.+.+
T Consensus 189 --~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l 266 (386)
T 1cs1_A 189 --ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYL 266 (386)
T ss_dssp --CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred --ceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 5655 7999998765566 8888876 776654311 00 00 0 1122334
Q ss_pred HcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee---c--------
Q 003466 727 SSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP---L-------- 777 (818)
Q Consensus 727 ~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p---~-------- 777 (818)
++++.+..+ ++.|.++.+++... ...+.+.|.++||++++ +
T Consensus 267 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~ 336 (386)
T 1cs1_A 267 QTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRRFLGGLSLFTLAESLGGVESLISH 336 (386)
T ss_dssp TTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHHHHHTCSSSEEBSCCCSSSCEEEE
T ss_pred hcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHHHHHhCCcceEcccCCCcceeeec
Confidence 445444333 45688999987532 33566778889999873 1
Q ss_pred --------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 778 --------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 778 --------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.+.+|+++++..++++|+.+.++|+++
T Consensus 337 ~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 337 AATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp GGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 278999999988888888888777654
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=173.45 Aligned_cols=314 Identities=13% Similarity=-0.011 Sum_probs=187.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|||+.++.++.. - .+++.+|+... ...+ ...+...+|.++|+++++. +.++|++||++|++.|++
T Consensus 43 ~ylD~~~~~~~~~---~-~~~~~~a~~~~-----~~~y--~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~al~ 108 (456)
T 2ez2_A 43 IYIDLLTDSGTNA---M-SDKQWAGMMMG-----DEAY--AGSENFYHLERTVQELFGF---KHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp CSEECSCSSSCCC---C-CHHHHHHHTTC-----CCCS--SSCHHHHHHHHHHHHHHCC---SEEEEESSHHHHHHHHHH
T ss_pred ceeeeccccCCcc---C-CHHHHHHhhcc-----hhhc--ccChhHHHHHHHHHHHhCC---CcEEEeCCcHHHHHHHHH
Confidence 7999987554432 2 46777776521 1111 1356678999999999873 689999999999999998
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.+. . ++ + |+...+||+.+..++...|.....-+ ....
T Consensus 109 ~l~-----~---------------~g--d-i~~~~~~~~~~~~~~~~~G~~~~~v~--------------~~~~------ 145 (456)
T 2ez2_A 109 LAI-----K---------------PG--Q-YVAGNMYFTTTRYHQEKNGAVFVDIV--------------RDEA------ 145 (456)
T ss_dssp HHC-----C---------------TT--C-EEEESSCCHHHHHHHHHTTCEEEECB--------------CGGG------
T ss_pred HhC-----C---------------CC--C-EeccccccchhHHHHHHcCCEEEEec--------------cccc------
Confidence 761 1 22 3 77888998987776666553311100 0000
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..|+.. .+|+ + .-| .+.|++.+.+ .....+++|++++..++.+|. +.+
T Consensus 146 ---~~~~~~---------~~~~-----~--~~d--------~~~l~~~i~~----~t~~~~~~v~l~~p~n~ptG~-~~~ 193 (456)
T 2ez2_A 146 ---HDAGLN---------IAFK-----G--DID--------LKKLQKLIDE----KGAENIAYICLAVTVNLAGGQ-PVS 193 (456)
T ss_dssp ---GCTTCC---------CSCT-----T--CBC--------HHHHHHHHHH----HCGGGEEEEEEESSBTTTTSB-CCC
T ss_pred ---cccccc---------cccc-----C--CCC--------HHHHHHHHHh----ccccceeEEEEeccCCCCCCc-cCC
Confidence 000000 0000 0 001 2566777753 112457899999432547785 558
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccC----------cccCCccch--hcccCCCCcEEEec-ccccCCccc-cceeec-c
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGVETT--ADLLGCVPDIACYG-KLLTGGVIP-LAATLA-T 704 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TG----------fGRtG~~~a--~e~~gv~PDivtlg-KgLggGy~P-lsAvl~-~ 704 (818)
.+++++|.++|++||+++|+||+|+. +++.|..+. .+..+..+|++++| |.+++ .| .|++++ +
T Consensus 194 ~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~--~~~gG~~~~~~ 271 (456)
T 2ez2_A 194 MANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL--VNIGGFLCMND 271 (456)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC--CSSCEEEEESC
T ss_pred HHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC--CCceeEEEECC
Confidence 99999999999999999999999974 456665332 11234558998884 66654 35 555666 5
Q ss_pred hHHHhhccC------------C-h--H-------H---H-H----------HHHHHHHHcCC--CeeEEEeeeeEEEEEE
Q 003466 705 NAVFDSFVG------------D-S--K-------L---W-D----------LELIQQISSHR--TVQRVVALGTLCAIEL 746 (818)
Q Consensus 705 ~~i~~~l~~------------~-~--~-------~---~-~----------~~l~~~l~~~~--~v~~vrg~Gl~~~iel 746 (818)
+++++.+.. . . . . + . +.+.+.+++.+ .+.. ..|.++.+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p--~~~~~~~~~~ 349 (456)
T 2ez2_A 272 DEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIVEP--VGGHAVFLDA 349 (456)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCBCSS--CCSSEEEEEH
T ss_pred HHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCccccC--CCceEEEEEh
Confidence 676553210 0 0 0 0 0 0 11222333322 1111 2255555555
Q ss_pred ec--CcccCCCchHH-HHHHHHHH-HhCCceEeec------------------CCEEEEECCCC-ChHHHHHHHHHHHHH
Q 003466 747 QA--AGCNAGYGSLY-AASLLKKL-REDGVYMRPL------------------GNVIYLMCGPC-SSPEVCSQLLLKLYQ 803 (818)
Q Consensus 747 ~~--~~~~~~~~~~~-a~~~~~~l-~e~Gvlv~p~------------------g~~ir~~ppl~-~t~edId~~~~~l~~ 803 (818)
.. .. . ..... +..+++.| .++||.+.+. .+.+|++++.. +|++||++++++|++
T Consensus 350 ~~~~~~--~-~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~ 426 (456)
T 2ez2_A 350 RRFCEH--L-TQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426 (456)
T ss_dssp HHHTTT--S-CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred HHhcCC--C-ChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 31 10 0 01122 45567777 5889986431 26899999987 899999999999999
Q ss_pred HHHHHH
Q 003466 804 RLEEFD 809 (818)
Q Consensus 804 ~l~~l~ 809 (818)
++++..
T Consensus 427 ~l~~~~ 432 (456)
T 2ez2_A 427 LYQHKE 432 (456)
T ss_dssp HHHTGG
T ss_pred HHhhhh
Confidence 987654
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=168.87 Aligned_cols=275 Identities=11% Similarity=0.048 Sum_probs=175.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
++++.+++..+........+..+.++...+++++|+++.+. +.+++++||++|++.|++.+. +.|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~-----~~g------- 103 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG---EAGLATASGISAITTTLLTLC-----QQG------- 103 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT-------
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CCC-------
Confidence 56666666633333222222334578899999999999874 578888999999999999761 122
Q ss_pred CCccccccceEEEEEcCCCCCCccccc---cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAM---EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~al---s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
.+||+.+.+||+...... ...|.. .+.+|
T Consensus 104 ---------d~vi~~~~~~~~~~~~~~~~~~~~g~~------------------------------~~~v~--------- 135 (398)
T 2rfv_A 104 ---------DHIVSASAIYGCTHAFLSHSMPKFGIN------------------------------VRFVD--------- 135 (398)
T ss_dssp ---------CEEEEESSSCHHHHHHHHTHHHHTTCE------------------------------EEEEC---------
T ss_pred ---------CEEEEcCCCcccHHHHHHHHHHHcCCE------------------------------EEEeC---------
Confidence 378888888887442221 111110 00111
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
.+| .+.+++.+. .++++|++|++ ++..|.+.+ +++|.++|++||
T Consensus 136 -----~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~ 179 (398)
T 2rfv_A 136 -----AAK------------------PEEIRAAMR--------PETKVVYIETP-ANPTLSLVD----IETVAGIAHQQG 179 (398)
T ss_dssp -----TTS------------------HHHHHHHCC--------TTEEEEEEESS-BTTTTBCCC----HHHHHHHHHHTT
T ss_pred -----CCC------------------HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcC
Confidence 112 255666663 36789999997 888898885 999999999999
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcE--EEecccccCCcccc-ceeecchHHHh-hcc-------CChH-------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPL-AATLATNAVFD-SFV-------GDSK------- 716 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDi--vtlgKgLggGy~Pl-sAvl~~~~i~~-~l~-------~~~~------- 716 (818)
+++|+||+++ .|..+... .++ +|+ .+++|.+++...|+ |++++++++++ .+. ....
T Consensus 180 ~~li~De~~~-~~~~~~~~---~~~--~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (398)
T 2rfv_A 180 ALLVVDNTFM-SPYCQQPL---QLG--ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWL 253 (398)
T ss_dssp CEEEEECTTT-CTTTCCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHH
T ss_pred CEEEEECCCc-ccccCCch---hhC--CcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 9999999996 33333322 234 565 58999998744788 88899988765 332 1110
Q ss_pred ---------H-HH------HHHHHHHHcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHH
Q 003466 717 ---------L-WD------LELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 717 ---------~-~~------~~l~~~l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
. ++ +.+.+.+++++.+.++ ++.|.++.+++.... ..+..
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~ 326 (398)
T 2rfv_A 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL-------EAGRR 326 (398)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-------HHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH-------HHHHH
Confidence 0 00 1123445555443333 346888888885321 23444
Q ss_pred HHHHHHhCCceEeec----------------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPL----------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~----------------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
+.+.+...|+.+.++ .+.+|++++...++++|++++++|+++
T Consensus 327 l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 555555556654322 379999999999999999999888653
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=169.10 Aligned_cols=297 Identities=12% Similarity=0.030 Sum_probs=186.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~AL 478 (818)
+++|+..| .++ . +|+|.+|+.+++. +.. ....++...++.++|+++++.+ ..+.++|+++|++|++.++
T Consensus 4 ~~~~~~~g----p~~-~-~~~v~~a~~~~~~---~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~ 73 (366)
T 1m32_A 4 NYLLLTPG----PLT-T-SRTVKEAMLFDSC---TWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVL 73 (366)
T ss_dssp -CEECSSS----SCC-C-CHHHHHTTCCCCC---TTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHH
T ss_pred ccccccCC----CcC-C-CHHHHHHHhhhhc---CCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHH
Confidence 46777765 233 5 8999999988642 211 0111256778889999888731 1137999999999999999
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
+.+. ..| .+||+.+..||+.+...+ ...|...
T Consensus 74 ~~~~-----~~g----------------d~vi~~~~~~~~~~~~~~~~~~g~~~-------------------------- 106 (366)
T 1m32_A 74 GSAL-----GPQ----------------DKVLIVSNGAYGARMVEMAGLMGIAH-------------------------- 106 (366)
T ss_dssp HHSC-----CTT----------------CCEEEEESSHHHHHHHHHHHHHTCCE--------------------------
T ss_pred HHhc-----CCC----------------CeEEEEeCCCccHHHHHHHHHhCCce--------------------------
Confidence 9771 122 357888888998643211 1112110
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
..++.+..+ +.| .+.+++.+.+ ..++.+|++... ++..|.+.
T Consensus 107 --~~v~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~ 148 (366)
T 1m32_A 107 --HAYDCGEVA-----------RPD------------------VQAIDAILNA------DPTISHIAMVHS-ETTTGMLN 148 (366)
T ss_dssp --EEEECCTTS-----------CCC------------------HHHHHHHHHH------CTTCCEEEEESE-ETTTTEEC
T ss_pred --EEEeCCCCC-----------CCC------------------HHHHHHHHhc------CCCeEEEEEecc-cCCcceec
Confidence 011111000 122 2567777763 123455655554 56678877
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHHhhccCC-
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGD- 714 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~~~- 714 (818)
+ +++|.++|++||+++|+||+++ +|.... .... ..+|+++ ++|+++|+ .++|++++++++++.+...
T Consensus 149 ~----l~~i~~l~~~~~~~li~Dea~~-~~~~~~--~~~~--~~~di~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~ 218 (366)
T 1m32_A 149 P----IDEVGALAHRYGKTYIVDAMSS-FGGIPM--DIAA--LHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKGHS 218 (366)
T ss_dssp C----HHHHHHHHHHHTCEEEEECTTT-TTTSCC--CTTT--TTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTTCC
T ss_pred C----HHHHHHHHHHcCCEEEEECCcc-ccCcCc--cccc--cCccEEEecCcccccCC-CceEEEEECHHHHHhhcCCC
Confidence 6 8999999999999999999995 555431 1222 2478874 68999876 4679999999987654321
Q ss_pred -----------------------hH-------------HH------H----------HHHHHHHHcCCC--eeEE-Eeee
Q 003466 715 -----------------------SK-------------LW------D----------LELIQQISSHRT--VQRV-VALG 739 (818)
Q Consensus 715 -----------------------~~-------------~~------~----------~~l~~~l~~~~~--v~~v-rg~G 739 (818)
.. .+ . +.+.+.+++++. +... ...|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 298 (366)
T 1m32_A 219 RSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSP 298 (366)
T ss_dssp SCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCS
T ss_pred CCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCc
Confidence 00 11 1 012233444321 1110 1246
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec----CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.++.+.+.... ...+..+.+.|.++||++.+. .+.+|+.++..+|++|+++++++|++++++
T Consensus 299 ~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 299 IITAFYSPEDP------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp SEEEEECCCCT------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred eEEEEEcCccC------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 67777775310 012557888999999999874 478999999999999999999999887654
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=173.44 Aligned_cols=284 Identities=14% Similarity=0.048 Sum_probs=183.1
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|+|.+|+.+++. .+.. ....+...++.++|+++++.+.-+.++|++||++|++.+++.+. ..
T Consensus 25 ~~~v~~a~~~~~~--~~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~-----~~-------- 87 (411)
T 3nnk_A 25 DPRVLRAMSSQLI--GQYD--PAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI-----RP-------- 87 (411)
T ss_dssp CHHHHHHHTSCCC--CTTC--HHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHhhcccc--cccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc-----CC--------
Confidence 7999999987752 1211 01235567888999998875422247899999999999999771 12
Q ss_pred CCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
..+||+.+.+|||.... .+...|.. ...++.+..+
T Consensus 88 --------gd~Vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 123 (411)
T 3nnk_A 88 --------GDKVLVPVFGRFGHLLCEIARRCRAE----------------------------VHTIEVPWGE-------- 123 (411)
T ss_dssp --------TCEEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred --------CCEEEEecCCchHHHHHHHHHHcCCe----------------------------EEEEecCCCC--------
Confidence 24799999999985322 11111111 0111111100
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+.+ .++++|+++++ ++..|.+.+ +++|.++|++||++
T Consensus 124 ---~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 170 (411)
T 3nnk_A 124 ---VFT------------------PDQVEDAVKR-------IRPRLLLTVQG-DTSTTMLQP----LAELGEICRRYDAL 170 (411)
T ss_dssp ---CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHHTCE
T ss_pred ---CCC------------------HHHHHHHHhh-------CCCeEEEEeCC-CCCcceecc----HHHHHHHHHHcCCE
Confidence 001 2567777752 25779999997 899998876 88999999999999
Q ss_pred EEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHHhhccCCh-------------------
Q 003466 657 VIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGDS------------------- 715 (818)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~~~~------------------- 715 (818)
+|+||+++ +|.. .+....++ +|+++ ++|+|+|+ .++|++++++++++.+....
T Consensus 171 li~Dea~~-~~~~--~~~~~~~~--~d~~~~s~~K~l~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~ 244 (411)
T 3nnk_A 171 FYTDATAS-LGGN--PLETDVWG--LDAVSAGMQKCLGGP-SGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMI 244 (411)
T ss_dssp EEEECTTT-BTTB--CCCTTTTT--CSEEECCSTTTTCCC-SSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCC
T ss_pred EEEECCcc-cCCc--ccchhccC--CcEEEecCccccCCC-CceEEEEECHHHHHHHhhcccccccccccccccccCCCC
Confidence 99999985 4322 22233334 56665 55998887 58899999999876543210
Q ss_pred ------------------------H------------HHH---------------HHHHHHHHcCCC-e-e-EEEeeeeE
Q 003466 716 ------------------------K------------LWD---------------LELIQQISSHRT-V-Q-RVVALGTL 741 (818)
Q Consensus 716 ------------------------~------------~~~---------------~~l~~~l~~~~~-v-~-~vrg~Gl~ 741 (818)
. .+. +.+.+.+++.+. + . .....+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 324 (411)
T 3nnk_A 245 YSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNV 324 (411)
T ss_dssp SCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSE
T ss_pred cccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccE
Confidence 0 000 112333444322 1 1 00124566
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEEC-CCCChHHHHHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~p-pl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+.+.+... ..+..+.+.|+++ ||+++++ ++.+|+.+ +..+|++||++++++|+++++++.
T Consensus 325 ~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 325 LGVVIPQG--------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp EEEECCTT--------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCC--------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 66666322 1255788888887 9999873 47999998 878899999999999999998753
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=166.48 Aligned_cols=283 Identities=15% Similarity=0.113 Sum_probs=181.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
++||+.++. +.+|+. |.+ | ++.... +..+...+|.++|+++++.+ .+.++++++|++|++.+++
T Consensus 30 ~~i~l~~~~--~~~~~~--~~v--a----~~~~~~-----Y~~~~~~~lr~~la~~~~~~-~~~v~~~~G~~~ai~~~~~ 93 (356)
T 1fg7_A 30 GDVWLNANE--YPTAVE--FQL--T----QQTLNR-----YPECQPKAVIENYAQYAGVK-PEQVLVSRGADEGIELLIR 93 (356)
T ss_dssp CSEECSSCC--CSSCCC--CCC--C----CCCTTS-----CCCSSCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred ceEEeeCCC--CCCCCC--HhH--h----hhhhcc-----CCCccHHHHHHHHHHHhCCC-hHHEEEcCCHHHHHHHHHH
Confidence 789998864 567875 455 2 221111 11222467888888877643 3689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... . +++.+|++.+.+||+....+.. .|....
T Consensus 94 ~~~-----~---------------~g~d~Vl~~~p~~~~~~~~~~~-~g~~~~--------------------------- 125 (356)
T 1fg7_A 94 AFC-----E---------------PGKDAILYCPPTYGMYSVSAET-IGVECR--------------------------- 125 (356)
T ss_dssp HHC-----C---------------TTTCEEEECSSSCTHHHHHHHH-HTCEEE---------------------------
T ss_pred HHh-----C---------------CCCCEEEEeCCChHHHHHHHHH-cCCEEE---------------------------
Confidence 761 1 2224799999999986543322 221100
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
.++..+.+ -.| .+.+++.+ . ++.+|++... ++..|.+. |
T Consensus 126 -~v~~~~~~-----------~~d------------------~~~l~~~i--------~-~~~~v~l~~p-~nptG~~~-~ 164 (356)
T 1fg7_A 126 -TVPTLDNW-----------QLD------------------LQGISDKL--------D-GVKVVYVCSP-NNPTGQLI-N 164 (356)
T ss_dssp -ECCCCTTS-----------CCC------------------HHHHHTSC--------T-TEEEEEEESS-CTTTCCCC-C
T ss_pred -EeeCCCCC-----------CCC------------------HHHHHHHh--------c-CCCEEEEeCC-CCCCCCCC-C
Confidence 01100000 001 13333322 1 5677777765 78888765 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccCCCCcEEEeccccc-CCccccceeecchHHHhhccCC---
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGD--- 714 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~--- 714 (818)
.+.+++|.++|+ ||+++|+||++++|++....... +.++....+.+++|.+| .| +++|++++++++++.+...
T Consensus 165 ~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~ 242 (356)
T 1fg7_A 165 PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAG-LRCGFTLANEEVINLLMKVIAP 242 (356)
T ss_dssp HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCch-hhhEEEEeCHHHHHHHHHhcCC
Confidence 899999999999 99999999999988743333322 33333344669999998 78 7999999999988765321
Q ss_pred ---hH--------------H--HH----------HHHHHHHHcCCCe-eEEEeeeeEEEEEEecCcccCCCchHHHHHHH
Q 003466 715 ---SK--------------L--WD----------LELIQQISSHRTV-QRVVALGTLCAIELQAAGCNAGYGSLYAASLL 764 (818)
Q Consensus 715 ---~~--------------~--~~----------~~l~~~l~~~~~v-~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~ 764 (818)
.. . +. +.+.+.+++++.+ ......|.++.+++. + +..++
T Consensus 243 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~----------~~~l~ 311 (356)
T 1fg7_A 243 YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-A----------SSAVF 311 (356)
T ss_dssp SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-T----------HHHHH
T ss_pred CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-C----------HHHHH
Confidence 00 1 11 1233445556643 223456777766664 2 45688
Q ss_pred HHHHhCCceEee-c-----CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 765 KKLREDGVYMRP-L-----GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 765 ~~l~e~Gvlv~p-~-----g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+.|.++||++++ + .+.+|++++ +++|+++++++|++
T Consensus 312 ~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 312 KSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp HHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred HHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 889999999998 3 258999986 58999999988865
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-15 Score=166.69 Aligned_cols=275 Identities=13% Similarity=0.066 Sum_probs=179.2
Q ss_pred ccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 411 ~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
..++|. +|+.++++.. ...++. +....++...+++++|+++++. +.++|++||++|+..|++.+. ..
T Consensus 28 ~~~~~~-~~~~~~~~~~--~~~~~~-y~~~~~~~~~~l~~~la~~~g~---~~~~~~~~gt~a~~~al~~l~-----~~- 94 (412)
T 2cb1_A 28 AAYGFK-TLEEGQERFA--TGEGYV-YARQKDPTAKALEERLKALEGA---LEAVVLASGQAATFAALLALL-----RP- 94 (412)
T ss_dssp SBCCCS-SHHHHHHHHH--HCCSCS-BTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTC-----CT-
T ss_pred ceeecC-ChHHHHHHhc--cccCcC-cCCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CC-
Confidence 367888 8776665554 222221 2223467899999999999873 589999999999999999761 11
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
...||+.+..||+........... .| ...+.+|
T Consensus 95 ---------------gd~vi~~~~~~~~~~~~~~~~~~~--------------~g-------------~~~~~~~----- 127 (412)
T 2cb1_A 95 ---------------GDEVVAAKGLFGQTIGLFGQVLSL--------------MG-------------VTVRYVD----- 127 (412)
T ss_dssp ---------------TCEEEEETTCCHHHHHHHHHTTTT--------------TT-------------CEEEEEC-----
T ss_pred ---------------CCEEEEeCCCchhHHHHHHHHHHH--------------cC-------------CEEEEEC-----
Confidence 237888888887632111100000 00 0000001
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
. + .+.+++.+. .++++|++|++ ++..|.+.+ +++|.++|
T Consensus 128 ------------~--------~--------~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~l~ 166 (412)
T 2cb1_A 128 ------------P--------E--------PEAVREALS--------AKTRAVFVETV-ANPALLVPD----LEALATLA 166 (412)
T ss_dssp ------------S--------S--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHH
T ss_pred ------------C--------C--------HHHHHHHhc--------cCCeEEEEeCC-CCCCccccc----HHHHHHHH
Confidence 0 0 155666664 36789999997 888898875 99999999
Q ss_pred HhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecch-----------------------
Q 003466 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATN----------------------- 705 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~----------------------- 705 (818)
++||+++|+||+|++++... ...+..+|+++ ++|.++|+..++|++++.+
T Consensus 167 ~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 241 (412)
T 2cb1_A 167 EEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWE 241 (412)
T ss_dssp HHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HH
T ss_pred HHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhh
Confidence 99999999999998663222 22234589886 9999987546888877644
Q ss_pred -----HHHhhccC------Ch---H-----------HH----------HHHHHHHHHcCCCeeEE---------------
Q 003466 706 -----AVFDSFVG------DS---K-----------LW----------DLELIQQISSHRTVQRV--------------- 735 (818)
Q Consensus 706 -----~i~~~l~~------~~---~-----------~~----------~~~l~~~l~~~~~v~~v--------------- 735 (818)
++.+.++. +. . .+ .+.+.+.|.+++.+..+
T Consensus 242 ~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~ 321 (412)
T 2cb1_A 242 ALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNAR 321 (412)
T ss_dssp HHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHH
Confidence 23222211 00 0 01 12344556677776655
Q ss_pred ---EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------------------------CCEE
Q 003466 736 ---VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------------------------GNVI 781 (818)
Q Consensus 736 ---rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------------------------g~~i 781 (818)
++.|.++.+.+ .+ ...+.+.|.+.||++ .. ...|
T Consensus 322 ~~~~~~~~iv~~~~-~~----------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~i 389 (412)
T 2cb1_A 322 KYLASGGPILTLDL-GD----------LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLV 389 (412)
T ss_dssp HHCSSSCSEEEEEC-SS----------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEE
T ss_pred HhCCCCceEEEEEe-CC----------HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeE
Confidence 35778999998 43 223455666778886 32 3689
Q ss_pred EEECCCCChHHHHHHHHHHHHH
Q 003466 782 YLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 782 r~~ppl~~t~edId~~~~~l~~ 803 (818)
|++.....++++|+.++++|++
T Consensus 390 R~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 390 RVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp EEECCSSCHHHHHHHHHHHHHC
T ss_pred EEEeccCCHHHHHHHHHHHHhh
Confidence 9999999999999999988864
|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=173.23 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCC-EEEEEcCCCChH-----------HHHHHHHHHHHh-----CCCcEE
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGI-----------SGTISAYESLKL-----RGYDVV 282 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i-----------~~~~~~~~~l~~-----~~~~v~ 282 (818)
.+|+++|||+||++.|. .+.+ ++|++.++.| +|||.+.++|++ ++++.+++.+.. .+++|+
T Consensus 225 ~~d~vlVEGqGgl~~P~-~~~t-~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~ 302 (349)
T 2obn_A 225 NYDILHIEGQGSLLHPG-STAT-LPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVV 302 (349)
T ss_dssp TCSEEEECCCCCTTSTT-CCTH-HHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEE
T ss_pred CCCEEEEeCCCcccCcC-hHhH-HHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEE
Confidence 39999999999999999 5555 8999999988 889999999999 999999999976 789999
Q ss_pred EEEEccCC------CCCHHHHHHhhcCCCCEEe-cC
Q 003466 283 AVVFEDHG------LVNEVPLMSYLRNRVPVLV-LP 311 (818)
Q Consensus 283 gvi~N~~~------~~~~~~l~~~~~~~~pvlg-iP 311 (818)
||++|.+. .++.+++++.+ ++||++ +-
T Consensus 303 Gi~lN~~~~~~~~~~~~~~~ie~~~--glPv~d~~r 336 (349)
T 2obn_A 303 GIALNTAHLDEYAAKEAIAHTIAET--GLPCTDVVR 336 (349)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHH--CSCEECHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEec
Confidence 99999973 24667777777 999998 53
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-15 Score=164.91 Aligned_cols=307 Identities=10% Similarity=0.082 Sum_probs=179.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc-CCCCC-ChhHHHHHHHHHhcc----CCCCCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~-~~~~~-~~~~~eLae~L~~~~----~~~~l~~v~f~~SGseA 473 (818)
++||+.+| .+.-.. +|.|++|+.+++++++... ..++. .....+|.+.|++++ +.. .+.++|++++++|
T Consensus 57 ~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~-~~~i~~t~G~~~a 131 (432)
T 3ei9_A 57 QVISLGIG---DTTEPI-PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG-DDDVFVSDGAKCD 131 (432)
T ss_dssp CCEECSSC---CCCSCC-CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHH
T ss_pred CeEEccCC---CCCCCC-CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC-cceEEECCChHHH
Confidence 88999885 333345 8999999999998754321 11111 223355666666653 322 3689999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
+..+..++ +.| ..|++.+.+||+....+........+... +. . .
T Consensus 132 l~~l~~l~------~~g----------------d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~-~----~------ 175 (432)
T 3ei9_A 132 ISRLQVMF------GSN----------------VTIAVQDPSYPAYVDSSVIMGQTGQFNTD---VQ-K----Y------ 175 (432)
T ss_dssp HHHHHHHH------CTT----------------CCEEEEESCCTHHHHHHHHHTCSCCEETT---TT-E----E------
T ss_pred HHHHHHHc------CCC----------------CEEEEeCCCCHHHHHHHHHcCCccccccc---cc-c----c------
Confidence 88643322 122 37899999999865443322211110000 00 0 0
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
.....++.... ++ +. . .+++ ..++.+|++... ++..
T Consensus 176 ---~~~~~~~~~~~-------------~~----~~-------------~----~l~~------~~~~~~v~l~~p-~NPt 211 (432)
T 3ei9_A 176 ---GNIEYMRCTPE-------------NG----FF-------------P----DLST------VGRTDIIFFCSP-NNPT 211 (432)
T ss_dssp ---TTCEEEECCGG-------------GT----TS-------------C----CGGG------CCCCSEEEEESS-CTTT
T ss_pred ---CceEEeccCcc-------------cC----Cc-------------C----Chhh------CCCCCEEEEeCC-CCCC
Confidence 00011111100 00 00 0 0111 124456666654 7888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc----CCCCcEEEeccccc-CCccccceeecchHH-
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL----GCVPDIACYGKLLT-GGVIPLAATLATNAV- 707 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~----gv~PDivtlgKgLg-gGy~PlsAvl~~~~i- 707 (818)
|.+. +.+.+++|.++|++||+++|+||++++|...+.......+ +....+.++||.+| .| +++|++++++++
T Consensus 212 G~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~ 289 (432)
T 3ei9_A 212 GAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLL 289 (432)
T ss_dssp CCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCB
T ss_pred CCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc-cceEEEEEChHHh
Confidence 8766 7888999999999999999999999988655543332222 22334568999998 78 799999998876
Q ss_pred -------HhhccC--------ChH--------HH------------------HHHHHHHHHcCCCeeEEEe-eeeEEEEE
Q 003466 708 -------FDSFVG--------DSK--------LW------------------DLELIQQISSHRTVQRVVA-LGTLCAIE 745 (818)
Q Consensus 708 -------~~~l~~--------~~~--------~~------------------~~~l~~~l~~~~~v~~vrg-~Gl~~~ie 745 (818)
.+.+.. ... .+ .+.+.+.+++++ +.-+.+ .|.++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~ 368 (432)
T 3ei9_A 290 YSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG-YDVYGGKNAPYVWVH 368 (432)
T ss_dssp CTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEECSSSSEEEEE
T ss_pred hcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC-ceecCCCcceEEEEE
Confidence 343321 000 00 011233444443 322332 45566566
Q ss_pred EecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+... .+..++..|+++ ||++.|+ .+.+|++. ..++++|++++++|++.-
T Consensus 369 ~~~~---------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 369 FPNQ---------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSA--FGHRENILEACRRFKQLY 425 (432)
T ss_dssp CTTS---------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHH
T ss_pred CCCC---------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHh
Confidence 5421 244567777754 9999873 37899984 568999999999987653
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-16 Score=174.73 Aligned_cols=319 Identities=10% Similarity=-0.023 Sum_probs=191.2
Q ss_pred ceeecccccccccCCCCCCHH---------HHHHHH--HhhhhcccccCCCC--CChhHHHHHHHHHhccCCCCCCcEEE
Q 003466 400 QQFDACASWWTQGPDATLQIE---------LARDMG--YTAARFGHVMFPEN--VYEPALECAELLLQGVGKGWASRAYF 466 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~---------V~eAi~--~q~~~~~~~~~~~~--~~~~~~eLae~L~~~~~~~~l~~v~f 466 (818)
+|.|+.+.....+||++ +|. |.+|+. +.++ .+.. ...+ ...-..+|.+.|+++++-. .+.+++
T Consensus 17 ~~~~~~~~~~~i~l~~g-~p~~~~~~~~~~v~~a~~~~~~~~-~~~~-~~~Yp~~~~g~~~lr~~ia~~~~~~-~~~i~~ 92 (423)
T 3ez1_A 17 AYEAFKARGLNLNMQRG-QPADADFDLSNGLLTVLGAEDVRM-DGLD-LRNYPGGVAGLPSARALFAGYLDVK-AENVLV 92 (423)
T ss_dssp HHHHHHHHTCCEESCCC-CCCHHHHHTTGGGGGSCCGGGCEE-TTEE-TTSSCSCTTCCHHHHHHHHHHTTSC-GGGEEE
T ss_pred HHHHhhcCCceEecCCC-CCChHhCCCcHHHHHHHhhhHHhh-cchh-hhCCCCCCCChHHHHHHHHHHhCCC-hhhEEE
Confidence 56666666556666665 554 555553 2222 1111 1112 1222467778888877532 368999
Q ss_pred eCChhHHHH--HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCC
Q 003466 467 SDNGSTAIE--IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (818)
Q Consensus 467 ~~SGseA~e--~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~ 544 (818)
+++|++|+. .+++...+ +..|. .++ -......|++.+.+||+...... ..|..
T Consensus 93 t~G~~~al~~~~~~~~l~~---~~~g~-----~~~--~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~-------------- 147 (423)
T 3ez1_A 93 WNNSSLELQGLVLTFALLH---GVRGS-----TGP--WLSQTPKMIVTVPGYDRHFLLLQ-TLGFE-------------- 147 (423)
T ss_dssp CSSCHHHHHHHHHHHHHHT---CCTTC-----SSC--GGGGCCEEEEEESCCHHHHHHHH-HHTCE--------------
T ss_pred eCCcHHHHHHHHHHHHHhc---cCCCc-----ccc--ccCCCCEEEEcCCCcHHHHHHHH-HcCCE--------------
Confidence 999999997 77776521 00110 000 00002479999999988543322 22211
Q ss_pred CcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 003466 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (818)
Q Consensus 545 ~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI 624 (818)
.+.+|... + -.| .+.|++.+++ ..++++|+
T Consensus 148 ----------------~~~v~~~~--------~--g~d------------------~~~l~~~l~~------~~~~~~v~ 177 (423)
T 3ez1_A 148 ----------------LLTVDMQS--------D--GPD------------------VDAVERLAGT------DPSVKGIL 177 (423)
T ss_dssp ----------------EEEEEEET--------T--EEC------------------HHHHHHHHHS------CTTEEEEE
T ss_pred ----------------EEeccCCC--------C--CCC------------------HHHHHHHHhh------CCCceEEE
Confidence 01111000 0 001 2567777752 34688998
Q ss_pred EccccccCCCcccCCHHHHHHHHHHH-HhcCCcEEEeecccCcccCC-------ccchh----cccCCCCcEEEeccccc
Q 003466 625 IEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGFWRLG-------VETTA----DLLGCVPDIACYGKLLT 692 (818)
Q Consensus 625 vEPV~~g~gG~~~~p~~fl~~LreLc-~~~gilLI~DEV~TGfGRtG-------~~~a~----e~~gv~PDivtlgKgLg 692 (818)
+.|..++..|.+. +.+.+++|.++| ++||+++|+||+++.+...+ ..+.. +..+....+.++||.+.
T Consensus 178 ~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 256 (423)
T 3ez1_A 178 FVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITF 256 (423)
T ss_dssp ECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSC
T ss_pred ECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhcc
Confidence 8986678788776 677799999999 99999999999998432222 22222 12233344779999877
Q ss_pred CCccccceeecchHHHhhccCChH----------------HHHH-------H--------------HHHHHHc----CC-
Q 003466 693 GGVIPLAATLATNAVFDSFVGDSK----------------LWDL-------E--------------LIQQISS----HR- 730 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~~----------------~~~~-------~--------------l~~~l~~----~~- 730 (818)
+| +++|++++++++++.+..... .+.. . +.+.+.+ .+
T Consensus 257 ~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 335 (423)
T 3ez1_A 257 AG-AGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGE 335 (423)
T ss_dssp SS-SSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred CC-cceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 78 799999999998776532110 1111 0 1111211 22
Q ss_pred CeeE-EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----------CCEEEEECCCCChHHHHHHHH
Q 003466 731 TVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGPCSSPEVCSQLL 798 (818)
Q Consensus 731 ~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----------g~~ir~~ppl~~t~edId~~~ 798 (818)
.+.- ....|.++.+++... .+..+.+.|.++||++.+. .+.+|+.++.. ++++|++++
T Consensus 336 ~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~ 405 (423)
T 3ez1_A 336 YATWTLPKGGYFISLDTAEP---------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAM 405 (423)
T ss_dssp SEEECCCSBSSCEEEEESSS---------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHH
T ss_pred ceEEeCCCccEEEEEECCCC---------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHH
Confidence 1211 123577777777532 1456778899999999881 27899999765 999999999
Q ss_pred HHHHHHHHHHH
Q 003466 799 LKLYQRLEEFD 809 (818)
Q Consensus 799 ~~l~~~l~~l~ 809 (818)
++|.++++++.
T Consensus 406 ~~l~~~l~~~~ 416 (423)
T 3ez1_A 406 QVVAACIRLAT 416 (423)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.4e-16 Score=168.20 Aligned_cols=297 Identities=10% Similarity=0.077 Sum_probs=188.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc---cc---cCCCCCChhHHHHHHH-HHhccCCCCCCcEEEeCChhH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HV---MFPENVYEPALECAEL-LLQGVGKGWASRAYFSDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~---~~---~~~~~~~~~~~eLae~-L~~~~~~~~l~~v~f~~SGse 472 (818)
.|||+.+ +.|+. +|++.+|+.++++... +. .......+...++.++ |+++++. +.++|+++|++
T Consensus 10 i~ld~~~-----~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~---~~v~~~~g~t~ 80 (371)
T 2e7j_A 10 INIDPLQ-----TGGKL-TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC---DVARVTNGARE 80 (371)
T ss_dssp EECCHHH-----HTCCC-CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS---SEEEEESSHHH
T ss_pred EEecccc-----cCCCC-CHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC---CEEEEeCChHH
Confidence 4666632 45677 9999999999987652 10 1112345678899999 9999874 38999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
|++.+++.++ .. ..+|++.+.+||+.... +...|...
T Consensus 81 a~~~~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~-~~~~g~~~--------------------- 117 (371)
T 2e7j_A 81 AKFAVMHSLA-----KK----------------DAWVVMDENCHYSSYVA-AERAGLNI--------------------- 117 (371)
T ss_dssp HHHHHHHHHC-----CT----------------TCEEEEETTCCHHHHHH-HHHTTCEE---------------------
T ss_pred HHHHHHHHHh-----CC----------------CCEEEEccCcchHHHHH-HHHcCCeE---------------------
Confidence 9999999871 12 24789999999986544 33222210
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
..++.|... +. --| .+.+++.+.+. ...+++++|++++. ++.
T Consensus 118 -------~~v~~~~~~--------~~-~~d------------------~~~l~~~l~~~---~~~~~~~~v~~~~~-~np 159 (371)
T 2e7j_A 118 -------ALVPKTDYP--------DY-AIT------------------PENFAQTIEET---KKRGEVVLALITYP-DGN 159 (371)
T ss_dssp -------EEECCCCTT--------TC-CCC------------------HHHHHHHHHHH---TTTSCEEEEEEESS-CTT
T ss_pred -------EEeecccCC--------CC-CcC------------------HHHHHHHHHhh---cccCCeEEEEEECC-CCC
Confidence 011100000 00 001 24566666531 01146889999997 898
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhh
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDS 710 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~ 710 (818)
.|.+.+ +++|.++|++||+++|+||+++. |..+ .....++ +|++ +++|.+++|. ++|++++++++++.
T Consensus 160 tG~~~~----~~~i~~~~~~~~~~li~D~a~~~-~~~~--~~~~~~~--~di~~~s~sK~~~~~~-~~G~~~~~~~~~~~ 229 (371)
T 2e7j_A 160 YGNLPD----VKKIAKVCSEYDVPLLVNGAYAI-GRMP--VSLKEIG--ADFIVGSGHKSMAASG-PIGVMGMKEEWAEI 229 (371)
T ss_dssp TCCCCC----HHHHHHHHHTTTCCEEEECTTTB-TTBC--CCHHHHT--CSEEEEEHHHHSSCCS-SCEEEEECTTTTTT
T ss_pred CcccCC----HHHHHHHHHHcCCeEEEECcccc-CCCC--CChhhcC--CCEEEecCCcCCCCCC-CcEEEEEechhhhh
Confidence 898886 69999999999999999999964 4443 2223344 6776 4699999984 99999999988665
Q ss_pred -ccC--C---------hH---------------HHH---------H----HHHHHHHcCCCeeEEEe---eeeEEEEEEe
Q 003466 711 -FVG--D---------SK---------------LWD---------L----ELIQQISSHRTVQRVVA---LGTLCAIELQ 747 (818)
Q Consensus 711 -l~~--~---------~~---------------~~~---------~----~l~~~l~~~~~v~~vrg---~Gl~~~iel~ 747 (818)
+.. . .. .+. . .+.+.+++.+ +.-+.. .|.++.+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~ 308 (371)
T 2e7j_A 230 VLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLG-IKQLGDNPHNHDLMFFHAE 308 (371)
T ss_dssp TTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTT-CEEESSSSCCSSEEEEECH
T ss_pred hccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cEEecCCCccCceEEEECC
Confidence 321 0 11 111 0 1122333332 221111 3566666653
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEee--------c--CCEEE-EECCCC-ChHHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRP--------L--GNVIY-LMCGPC-SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p--------~--g~~ir-~~ppl~-~t~edId~~~~~l~~~l~~l 808 (818)
+ +..+.+.|.++||++.+ . .+.+| +.++.. +|++|+++++++|+++++++
T Consensus 309 -~----------~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 309 -V----------LYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp -H----------HHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -C----------HHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 1 45678888899999876 1 36688 888887 89999999999999987653
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-15 Score=164.14 Aligned_cols=300 Identities=13% Similarity=0.028 Sum_probs=181.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc-CCCCC-ChhHHHHHHHHHhcc--C-CCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV--G-KGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~-~~~~~-~~~~~eLae~L~~~~--~-~~~l~~v~f~~SGseA~ 474 (818)
++||+.++.. .++ . +|.|.+|+.++++++.... ...+. .....+|.+.|++++ + .. .+.+++++++++|+
T Consensus 34 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~-~~~v~~~~G~~~al 108 (400)
T 3asa_A 34 TVINLSIGDT--TQP-L-NASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVD-AKEIFISDGAKVDL 108 (400)
T ss_dssp CCEECSSCCC--CCC-C-CHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSC-GGGEEEESCHHHHH
T ss_pred ceEeccCCCC--CCC-C-CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCC-HHHEEEccChHHHH
Confidence 7888877542 233 4 8999999999988753211 11121 233567888888873 3 11 36899999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
+.++++. ..| .+|++.+.+||+.... +...|...
T Consensus 109 ~~~~~~~------~~g----------------d~Vl~~~p~y~~~~~~-~~~~g~~~----------------------- 142 (400)
T 3asa_A 109 FRLLSFF------GPN----------------QTVAIQDPSYPAYLDI-ARLTGAKE----------------------- 142 (400)
T ss_dssp HHHHHHH------CSS----------------CEEEEEESCCHHHHHH-HHHTTCSE-----------------------
T ss_pred HHHHHHc------CCC----------------CEEEECCCCcHHHHHH-HHHcCCcc-----------------------
Confidence 9876543 122 3799999999985432 22222110
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
...++.... + .+. . .++ . ..++++|+++.. ++..|
T Consensus 143 ----~~~~~~~~~-------------~----~~~-------------~----~l~-----~-~~~~~~v~l~~p-~nptG 177 (400)
T 3asa_A 143 ----IIALPCLQE-------------N----AFF-------------P----EFP-----E-DTHIDILCLCSP-NNPTG 177 (400)
T ss_dssp ----EEEEECCGG-------------G----TTC-------------C----CCC-----T-TCCCSEEEEESS-CTTTC
T ss_pred ----eEecccchh-------------c----Ccc-------------c----Chh-----h-ccCccEEEEeCC-CCCCC
Confidence 000111000 0 000 0 011 0 134667777765 78888
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccCCCCc----EEEeccccc-CCccccceeecchHH-
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAV- 707 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD----ivtlgKgLg-gGy~PlsAvl~~~~i- 707 (818)
.+. |.+.+++|.++|++||+++|+||++++|+..|.. .....++-.+| +.+++|.+| .| +++|++++++++
T Consensus 178 ~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-lriG~~~~~~~~~ 255 (400)
T 3asa_A 178 TVL-NKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG-IRLGWTVIPQELT 255 (400)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTT-CCCEEEECCTTCB
T ss_pred CcC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcc-hheeEEeeChhhc
Confidence 765 7999999999999999999999999989776652 22222222234 568999998 78 799999998877
Q ss_pred ------Hhhcc---------CChH--------HH---------------HHHHHHHHHcCCCeeEEEe-eeeEEEEE-Ee
Q 003466 708 ------FDSFV---------GDSK--------LW---------------DLELIQQISSHRTVQRVVA-LGTLCAIE-LQ 747 (818)
Q Consensus 708 ------~~~l~---------~~~~--------~~---------------~~~l~~~l~~~~~v~~vrg-~Gl~~~ie-l~ 747 (818)
++.+. .... .+ .+.+.+.+++.+ +.-+.+ .|.++.++ +.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~ 334 (400)
T 3asa_A 256 YADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLATG-FEVFGGEHAPYLWVKPTQ 334 (400)
T ss_dssp CTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTT-CEEEECSSSSEEEEECCC
T ss_pred cchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCCCceEEEEeccC
Confidence 43221 1111 11 112334455553 332333 35666666 43
Q ss_pred cCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
... .+..++..|++ +||++.++ .+.+|++ +..++++|++++++|.+++++.
T Consensus 335 ~~~--------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 335 ANI--------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp TTC--------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC-----
T ss_pred CCC--------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHHhh
Confidence 210 12246677775 59999873 3679998 4678999999999999887654
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=166.45 Aligned_cols=253 Identities=12% Similarity=0.050 Sum_probs=166.7
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.+++++||++|++.|++.+. +. ..+||+.+..|||.
T Consensus 63 ~~~~~~~~l~~~la~~~g~---~~~~~~~sGt~A~~~al~~~~-----~~----------------gd~Vi~~~~~y~~~ 118 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVEDA---AFGRAFSSGMAAADCALRAML-----RP----------------GDHVVIPDDAYGGT 118 (392)
T ss_dssp TCCHHHHHHHHHHHHHTTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CC----------------CCEEEEeCCCcchH
Confidence 4578889999999999874 589999999999999999761 12 23799999999874
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
......... ..+ .....+| .+|
T Consensus 119 ~~~~~~~~~--------------~~g-------------~~~~~v~--------------~~d----------------- 140 (392)
T 3qhx_A 119 FRLIDKVFT--------------GWN-------------VEYTPVA--------------LAD----------------- 140 (392)
T ss_dssp HHHHHHTGG--------------GGT-------------CEEEEEC--------------TTC-----------------
T ss_pred HHHHHHHHH--------------hcC-------------cEEEEeC--------------CCC-----------------
Confidence 321101000 000 0000011 122
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. +++++|++|++ ++..|.+.+ +++|+++|++||+++|+||+++.+ +.....+
T Consensus 141 -~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~------~~~~~~~ 200 (392)
T 3qhx_A 141 -LDAVRAAIR--------PTTRLIWVETP-TNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP------ALQQPLS 200 (392)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT------TTCCGGG
T ss_pred -HHHHHHhhC--------CCCeEEEEECC-CCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc------ccCChHH
Confidence 255666664 37899999997 888898876 999999999999999999999622 2223345
Q ss_pred CCCcEEE--ecccccCCc-cccceeecc-hHHHhhccCChH-----------------------HH------HHHHHHHH
Q 003466 680 CVPDIAC--YGKLLTGGV-IPLAATLAT-NAVFDSFVGDSK-----------------------LW------DLELIQQI 726 (818)
Q Consensus 680 v~PDivt--lgKgLggGy-~PlsAvl~~-~~i~~~l~~~~~-----------------------~~------~~~l~~~l 726 (818)
..+|+++ ++|.+|++. +.+|+++++ +++++.+..... .+ .+.+.+.+
T Consensus 201 ~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L 280 (392)
T 3qhx_A 201 LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFL 280 (392)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5689987 999999743 577888887 577665432111 00 01234556
Q ss_pred HcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----------
Q 003466 727 SSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------- 777 (818)
Q Consensus 727 ~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----------- 777 (818)
+.++.+..| +|.|.++++++..+. ..+..+...|...|+.+..+
T Consensus 281 ~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-------~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~ 353 (392)
T 3qhx_A 281 AEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-------TAAEQLCAKTNIFILAESLGSVESLIEHPSA 353 (392)
T ss_dssp HTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-------HHHHHHHHHCSSSEECSCCCCSSCEEECGGG
T ss_pred hcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-------HHHHHHHHhCCCceECCCCCCCCceeeCccc
Confidence 778877666 667999999997531 34667777777666554321
Q ss_pred --------------CCEEEEECCCCChHHHHHHHHHHH
Q 003466 778 --------------GNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 778 --------------g~~ir~~ppl~~t~edId~~~~~l 801 (818)
.+.||++.....++++|+.+.++|
T Consensus 354 ~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 354 MTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp TSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred ccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 245777776655555555555544
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-15 Score=164.99 Aligned_cols=294 Identities=13% Similarity=0.056 Sum_probs=189.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|+|..+ .++. +|++.+|+.++++. +.. ....+...++.++|+++++.+ .+.++|+++|++|++.+++
T Consensus 10 ~yl~~~~------~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a~~~~~~ 77 (392)
T 2z9v_A 10 VITLTAG------PVNA-YPEVLRGLGRTVLY--DYD--PAFQLLYEKVVDKAQKAMRLS-NKPVILHGEPVLGLEAAAA 77 (392)
T ss_dssp SEECSSS------CCCC-CHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHTTCS-SCCEEESSCTHHHHHHHHH
T ss_pred ceeecCC------CcCC-CHHHHHHHhccccc--ccc--HHHHHHHHHHHHHHHHHhCCC-CCEEEEeCCchHHHHHHHH
Confidence 5777643 4567 99999999988764 110 012345678889999988753 3689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
.+. ..| .+|++.+.+||+.....+ ...|...
T Consensus 78 ~~~-----~~g----------------d~Vl~~~~~~~~~~~~~~~~~~g~~~--------------------------- 109 (392)
T 2z9v_A 78 SLI-----SPD----------------DVVLNLASGVYGKGFGYWAKRYSPHL--------------------------- 109 (392)
T ss_dssp HHC-----CTT----------------CCEEEEESSHHHHHHHHHHHHHCSCE---------------------------
T ss_pred Hhc-----CCC----------------CEEEEecCCcccHHHHHHHHHcCCce---------------------------
Confidence 761 122 368999999998531111 1111110
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
..++.+... ..| .+.+++.+++ ..++++|++++. ++..|.+.+
T Consensus 110 -~~v~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~ 152 (392)
T 2z9v_A 110 -LEIEVPYNE-----------AID------------------PQAVADMLKA------HPEITVVSVCHH-DTPSGTINP 152 (392)
T ss_dssp -EEEECCTTS-----------CCC------------------HHHHHHHHHH------CTTCCEEEEESE-EGGGTEECC
T ss_pred -EEeeCCCCC-----------CCC------------------HHHHHHHHhc------CCCCcEEEEecc-CCCCceecc
Confidence 011111000 011 2566777752 135678999987 888888876
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCCccccceeecchHHHhhccC---
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVG--- 713 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~~~i~~~l~~--- 713 (818)
+++|.++|++||+++|+||+++ +|... +....+ .+|++++ +|.++|+ .++|++++++++++.+..
T Consensus 153 ----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~sK~~~~~-~g~G~l~~~~~~~~~l~~~~~ 222 (392)
T 2z9v_A 153 ----IDAIGALVSAHGAYLIVDAVSS-FGGMK--THPEDC--KADIYVTGPNKCLGAP-PGLTMMGVSERAWAKMKANPL 222 (392)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTT-BTTBS--CCGGGG--TCSEEEECSSSTTCCC-SCCEEEEECHHHHHHHHTCTT
T ss_pred ----HHHHHHHHHHcCCeEEEEcccc-cCCcc--cccccc--cceEEEecCcccccCC-CceeEEEECHHHHHHhhhccC
Confidence 8999999999999999999995 54332 122223 4788765 6999876 467899999988764421
Q ss_pred -----------------Ch-H------------------HHH---------------HHHHHHHHcCCCeeEEE-----e
Q 003466 714 -----------------DS-K------------------LWD---------------LELIQQISSHRTVQRVV-----A 737 (818)
Q Consensus 714 -----------------~~-~------------------~~~---------------~~l~~~l~~~~~v~~vr-----g 737 (818)
.. . .+. +.+.+.+++.+ +.-+. .
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 301 (392)
T 2z9v_A 223 APRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMG-LSVWAASDSIA 301 (392)
T ss_dssp SCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGGB
T ss_pred CCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC-CeeccCCcccc
Confidence 00 0 000 11223344332 11111 1
Q ss_pred eeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~ 809 (818)
.+.++.+.+... ..+..+.+.|.++ ||++.+. .+.+|+.+.. .+|++|+++++++|+++++++.
T Consensus 302 ~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 302 SPTTTAVRTPDG--------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp CTTEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEECCCC--------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 356666666321 1245688899988 9999874 4789999644 7899999999999999988764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-16 Score=173.02 Aligned_cols=179 Identities=10% Similarity=0.021 Sum_probs=112.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLG 679 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~g 679 (818)
+.+++.+.+ .++++|++ +|. . |...+ +++|+++|++||+++|+||+|+ |+.+.|.+.....
T Consensus 159 ~~l~~~i~~-------~~~~~v~~~~~~-~---~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-- 221 (420)
T 3gbx_A 159 DEMAKLAKE-------HKPKMIIGGFSA-Y---SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-- 221 (420)
T ss_dssp HHHHHHHHH-------HCCSEEEECCTT-C---CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--
T ss_pred HHHHHHHHh-------cCCeEEEEecCc-c---CCccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcccc--
Confidence 567777752 23567788 554 3 23332 8999999999999999999974 6666665433221
Q ss_pred CCCcEEE--ecccccCCccccceeecch---HHHhhccC--------Ch-H----------------HH----------H
Q 003466 680 CVPDIAC--YGKLLTGGVIPLAATLATN---AVFDSFVG--------DS-K----------------LW----------D 719 (818)
Q Consensus 680 v~PDivt--lgKgLggGy~PlsAvl~~~---~i~~~l~~--------~~-~----------------~~----------~ 719 (818)
.+|+++ ++|+++|. ..|++++++ ++.+.+.. .. . .+ .
T Consensus 222 -~~di~~~s~sK~~~g~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 298 (420)
T 3gbx_A 222 -HAHVVTTTTHKTLAGP--RGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNA 298 (420)
T ss_dssp -TSSEEEEESSGGGCSC--SCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred -cCCEEEeecccCCCCC--CceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 289987 66999742 346677776 66554321 10 0 00 0
Q ss_pred HHHHHHHHcCCCeeEEE--eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-------c----CCEEEEECC
Q 003466 720 LELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------L----GNVIYLMCG 786 (818)
Q Consensus 720 ~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-------~----g~~ir~~pp 786 (818)
+.+.+.+.+.+ +.-+. ..+.++.+.+.... ..+..+.+.|.++||++.+ . .+.+|+.++
T Consensus 299 ~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~ 370 (420)
T 3gbx_A 299 KAMVEVFLNRG-YKVVSGGTENHLFLLDLVDKN-------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSP 370 (420)
T ss_dssp HHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECH
T ss_pred HHHHHHHHhcC-CeeccCCCCCeEEEEEcCCCC-------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecc
Confidence 12233344432 21111 24556666654321 1245567788899999987 1 256999998
Q ss_pred CC----ChHHHHHHHHHHHHHHHHHH
Q 003466 787 PC----SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 787 l~----~t~edId~~~~~l~~~l~~l 808 (818)
.. +++++|++++++|++++++.
T Consensus 371 ~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 371 AVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred hhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 76 45899999999999998664
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-15 Score=171.16 Aligned_cols=296 Identities=12% Similarity=0.026 Sum_probs=186.5
Q ss_pred CCCCHHHHHHHHHhhhhcccccCCCC-----CChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhc
Q 003466 415 ATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFD 488 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~ 488 (818)
++ ++.+.+++.++++.+........ ..+...++++++++++|.+ ..+.++|+++|++|+..|++.+ +.++.+
T Consensus 75 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~-~~~~~~ 152 (497)
T 3mc6_A 75 HG-GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSA-KMYALH 152 (497)
T ss_dssp CC-CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHH-HHHHHH
T ss_pred CC-chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHH-HHHHHh
Confidence 45 68999999999987544321111 1244557778888887643 1257999999999999999998 444322
Q ss_pred -ccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc-
Q 003466 489 -HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE- 566 (818)
Q Consensus 489 -~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~- 566 (818)
.|. .+..|++ ....|.+...++...|... ..++...
T Consensus 153 ~~g~-------------~~~~Vi~-~~~~h~~~~~~~~~~G~~~----------------------------~~v~~~~~ 190 (497)
T 3mc6_A 153 HRGI-------------TEPEIIA-PVTAHAGFDKAAYYFGMKL----------------------------RHVELDPT 190 (497)
T ss_dssp HSCC-------------SSCEEEE-ETTSCHHHHHHHHHSCCEE----------------------------EEECBCTT
T ss_pred cCCC-------------CCceEEE-eCCccHHHHHHHHHcCCeE----------------------------EEEecCcc
Confidence 221 1234444 5556665555555444321 0111110
Q ss_pred hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHH
Q 003466 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (818)
Q Consensus 567 ~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~L 646 (818)
.+ ..|+ +.|++.+. .++++|+++.. ++..|.+.+ +++|
T Consensus 191 ~~-----------~~d~------------------~~l~~~i~--------~~~~~v~~~~p-~nptG~~~~----l~~i 228 (497)
T 3mc6_A 191 TY-----------QVDL------------------GKVKKFIN--------KNTVLLVGSAP-NFPHGIADD----IEGL 228 (497)
T ss_dssp TC-----------SBCT------------------TTTGGGCC--------SSEEEEEEETT-CTTTCCCCS----CTTT
T ss_pred cC-----------cCCH------------------HHHHHHHh--------hCCEEEEEECC-CCCCCcCCC----HHHH
Confidence 00 0111 23444443 35789999986 778888876 8899
Q ss_pred HHHHHhcCCcEEEeecccCcccC-------Ccc--chhcccCCCCcEEE--ecccccCCccccceeecchHHHhhcc---
Q 003466 647 VKECQNRKIPVIFDEVFTGFWRL-------GVE--TTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFV--- 712 (818)
Q Consensus 647 reLc~~~gilLI~DEV~TGfGRt-------G~~--~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~--- 712 (818)
+++|++||++||+||+++|+.+. |.. +.....|+ |+++ +.|.+.+| .++|+++++++.+....
T Consensus 229 ~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~ 305 (497)
T 3mc6_A 229 GKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAP-KGSSVIMYRNSDLRMHQYYV 305 (497)
T ss_dssp TTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCC-SSCEEEECSSHHHHTTTSCC
T ss_pred HHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCC-CCceeEEecCHHHHhhhhcc
Confidence 99999999999999999876543 222 33444555 6665 45988777 68899998876654321
Q ss_pred -----CC---------------h--H-----H---------------HHHHHHHHHHc-CCCeeEE-EeeeeEEEEEEec
Q 003466 713 -----GD---------------S--K-----L---------------WDLELIQQISS-HRTVQRV-VALGTLCAIELQA 748 (818)
Q Consensus 713 -----~~---------------~--~-----~---------------~~~~l~~~l~~-~~~v~~v-rg~Gl~~~iel~~ 748 (818)
.. . . . ..+.+.+.+++ .+.+.-+ ...+.++.+....
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~ 385 (497)
T 3mc6_A 306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKT 385 (497)
T ss_dssp BTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTT
T ss_pred cccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCC
Confidence 00 0 0 0 01123445555 3543322 2344555554321
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+.+.|.++||+++... +.+|+.++ .+|++|+++++++|+++++++.
T Consensus 386 ---------~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 386 ---------LNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp ---------TTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHT
T ss_pred ---------CCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHH
Confidence 125678999999999988643 56888888 7899999999999999998875
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=173.17 Aligned_cols=306 Identities=14% Similarity=0.065 Sum_probs=197.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CC--CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FP--ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~--~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA 473 (818)
.|+|.. .+|+. ++.+.+++.++++.+.... .. ....+...++.++|+++++.. .+.++|++++++|
T Consensus 69 iyld~~------~~g~~-p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a 140 (465)
T 3e9k_A 69 IYFLGN------SLGLQ-PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGAN-EKEIALMNALTVN 140 (465)
T ss_dssp EECBTT------TSCCE-ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCC-GGGEEECSCHHHH
T ss_pred EEecCC------ccCCC-hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCC-cCCEEEECCHHHH
Confidence 677754 57888 8899999998887654221 10 122345567888888888753 3689999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc---cCCCCCCCcCCCCcccCCCcccCC
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~---tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
+..+++... +.| ..+.+||+.+.+||+......+. .|......
T Consensus 141 l~~~~~~~~-----~~~-------------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~---------------- 186 (465)
T 3e9k_A 141 LHLLMLSFF-----KPT-------------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEES---------------- 186 (465)
T ss_dssp HHHHHHHHC-----CCC-------------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHH----------------
T ss_pred HHHHHHHhc-----ccc-------------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceee----------------
Confidence 999998761 111 23567999999999865432222 12110000
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
....++.+..+ ..| .+.+++.|++ +.+++++|+++.+ +
T Consensus 187 -------~v~~~~~~~~~-----------~~d------------------~~~l~~~i~~-----~~~~~~lv~~~~~-~ 224 (465)
T 3e9k_A 187 -------MRMIKPREGEE-----------TLR------------------IEDILEVIEK-----EGDSIAVILFSGV-H 224 (465)
T ss_dssp -------EEEECCCTTCS-----------SCC------------------HHHHHHHHHH-----HGGGEEEEEEESB-C
T ss_pred -------eEEEecCCCCC-----------ccC------------------HHHHHHHHHh-----cCCCeEEEEEeCc-c
Confidence 00000000000 001 2566777752 2357899999997 9
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHH
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~ 708 (818)
+..|.+.+ +++|.++|++||+++|+|++|+ +|... .....++ .|+++ +.|.+.||...+|++.+++++.
T Consensus 225 n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~--~~~~~~~--~D~~~~s~~K~l~~gp~~~g~l~~~~~~~ 295 (465)
T 3e9k_A 225 FYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE--LYLHDWG--VDFACWCSYKYLNAGAGGIAGAFIHEKHA 295 (465)
T ss_dssp TTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHHT--CCEEEECSSSTTCCCTTCCCEEEECGGGT
T ss_pred cCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--CchhhcC--CCEEEECcccccccCCCceEEEEEcHHHH
Confidence 99999886 8999999999999999999995 43322 1222233 57764 5699976645678888988886
Q ss_pred hhccCC-------------------------------hH-------------HH---------------HHHHHHHHHcC
Q 003466 709 DSFVGD-------------------------------SK-------------LW---------------DLELIQQISSH 729 (818)
Q Consensus 709 ~~l~~~-------------------------------~~-------------~~---------------~~~l~~~l~~~ 729 (818)
+.+... .. .+ .+.+.+.++++
T Consensus 296 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 375 (465)
T 3e9k_A 296 HTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHN 375 (465)
T ss_dssp TTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 544210 00 00 01122333332
Q ss_pred ----------CCeeE-----EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEEC-CCCChHH
Q 003466 730 ----------RTVQR-----VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMC-GPCSSPE 792 (818)
Q Consensus 730 ----------~~v~~-----vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~p-pl~~t~e 792 (818)
+.+.- .+..|.++.+.+..+ +..+.+.|.++||++... .+.+|+.| |+.+|++
T Consensus 376 ~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~e 445 (465)
T 3e9k_A 376 YGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFH 445 (465)
T ss_dssp CC---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHH
T ss_pred ccccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHH
Confidence 33221 223477888877522 234788899999999875 48999999 8999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003466 793 VCSQLLLKLYQRLEEF 808 (818)
Q Consensus 793 dId~~~~~l~~~l~~l 808 (818)
||++++++|++++++.
T Consensus 446 di~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 446 DVYKFTNLLTSILDSA 461 (465)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988653
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=166.48 Aligned_cols=300 Identities=13% Similarity=0.036 Sum_probs=183.0
Q ss_pred cceeecccccccccCCCCCCHHHHHHHHHhhhhccc-cc-CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHH
Q 003466 399 GQQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476 (818)
Q Consensus 399 ~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~-~~-~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ 476 (818)
++|+|..+ .|.++|++.||.+.+++++++++++. .. ......+...+|+++|+++++. +..++++||++|++.
T Consensus 3 ~~~~~~~~--~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~---~~~i~~~~G~~a~~~ 77 (357)
T 3lws_A 3 NRLRTSFQ--QTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM---DDAVFFPSGTMAQQV 77 (357)
T ss_dssp CHHHHHHH--TCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC---SEEEEESCHHHHHHH
T ss_pred chhhhHHH--hhcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC---CcEEEecCcHHHHHH
Confidence 37888332 37889998899999999998887541 11 0011246778999999999874 566777999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc---cccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM---EAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al---s~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
|++.+.. ++..++|..+..||....... ...|.
T Consensus 78 al~~~~~--------------------~gd~~~vi~~~~~~~~~~~~~~~~~~~g~------------------------ 113 (357)
T 3lws_A 78 ALRIWSD--------------------ETDNRTVAYHPLCHLEIHEQDGLKELHPI------------------------ 113 (357)
T ss_dssp HHHHHHH--------------------HHTCCEEEECTTCHHHHSSTTHHHHHSSC------------------------
T ss_pred HHHHHhh--------------------cCCCcEEEecccceeeeeccchhhhccCc------------------------
Confidence 9997721 111226667777776443211 11111
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
..+.+|.... ..| .+.+++. . ++++|++++. ++..
T Consensus 114 ------~~~~v~~~~~----------~~d------------------~~~l~~~---------~-~~~~v~~~~p-~np~ 148 (357)
T 3lws_A 114 ------ETILVGAADR----------LMT------------------LDEIKAL---------P-DIACLLLELP-QREI 148 (357)
T ss_dssp ------EEEECSCTTS----------CCC------------------HHHHHTC---------C-SCSEEEEESS-BGGG
T ss_pred ------EEEEecCCCC----------CcC------------------HHHHhcC---------c-CcceEEEEcc-cccC
Confidence 1111121000 011 1333321 2 2678999986 6654
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeeccc-----CcccCCccchhcccCCCCcE--EEecccccCCccccceeecchH
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFT-----GFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPLAATLATNA 706 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~T-----GfGRtG~~~a~e~~gv~PDi--vtlgKgLggGy~PlsAvl~~~~ 706 (818)
|..+++.+.+++|.++|++||+++|+||++. ++|++...+. + ..|+ .+++|+++|. ..|.++++++
T Consensus 149 ~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~----~~d~~~~s~sK~~~~~--~gg~~~~~~~ 221 (357)
T 3lws_A 149 GGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-G----LFDSIYISFYKGLGGI--AGAILAGPAA 221 (357)
T ss_dssp TSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-T----TSSEEEEESSSTTCCS--SCEEEEECHH
T ss_pred CceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-h----cCCEEEEeccccCCCC--ceEEEEcCHH
Confidence 3345589999999999999999999999874 3344333222 1 2344 4999999653 2266788888
Q ss_pred HHhhccC-------C----hH-------H-------------HHHHHHHHHHcCCCeeEE--EeeeeEEEEEEecCcccC
Q 003466 707 VFDSFVG-------D----SK-------L-------------WDLELIQQISSHRTVQRV--VALGTLCAIELQAAGCNA 753 (818)
Q Consensus 707 i~~~l~~-------~----~~-------~-------------~~~~l~~~l~~~~~v~~v--rg~Gl~~~iel~~~~~~~ 753 (818)
+++.+.. . .. . ..+.+.+.+++++.+.-. ...+.++-+.+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~--- 298 (357)
T 3lws_A 222 FCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQA--- 298 (357)
T ss_dssp HHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCH---
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCCh---
Confidence 8766531 0 10 0 012234555666555321 234555656664321
Q ss_pred CCchHHHHHHHHHHHhCCceEeec----C--CEEEEECCC---CChHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLREDGVYMRPL----G--NVIYLMCGP---CSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e~Gvlv~p~----g--~~ir~~ppl---~~t~edId~~~~~l~~~l 805 (818)
...+..+.+.|.++||++++. . ..+|+.... ..++++|++++++|.+++
T Consensus 299 ---~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 299 ---ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp ---HHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 122567788899999999864 1 367776543 367889999999887764
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-14 Score=161.74 Aligned_cols=255 Identities=13% Similarity=0.035 Sum_probs=166.8
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+++++|+++.+. +.+++++||++|+..|++.+. ..| .+||+.+.+||+.
T Consensus 62 ~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~-----~~g----------------d~vl~~~~~~~~~ 117 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEGG---EAGLALASGMGAITSTLWTLL-----RPG----------------DEVLLGNTLYGCT 117 (398)
T ss_dssp -CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESSCCSHH
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----cCC----------------CEEEEeCCCchhH
Confidence 4578899999999999874 588889999999999999761 122 3788999988875
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
......+... . + .....+| .+|
T Consensus 118 ~~~~~~~~~~----~----------g-------------~~~~~~~--------------~~d----------------- 139 (398)
T 1gc0_A 118 FAFLHHGIGE----F----------G-------------VKLRHVD--------------MAD----------------- 139 (398)
T ss_dssp HHHHHHTGGG----G----------T-------------CEEEEEC--------------TTC-----------------
T ss_pred HHHHHHHHHH----c----------C-------------CEEEEEC--------------CCC-----------------
Confidence 4322111100 0 0 0000001 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. +++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+++.+ ..+.. ..++
T Consensus 140 -~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~-~~~~~---~~~~ 201 (398)
T 1gc0_A 140 -LQALEAAMT--------PATRVIYFESP-ANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP-YLQRP---LELG 201 (398)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-HHCCG---GGGT
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-ccCCc---hhhC
Confidence 145666663 36889999997 888888875 999999999999999999999643 33322 2345
Q ss_pred CCCcEEEecccccCCcccc-ceeecchHHHh-hcc-------CC--hH-----------HH----------HHHHHHHHH
Q 003466 680 CVPDIACYGKLLTGGVIPL-AATLATNAVFD-SFV-------GD--SK-----------LW----------DLELIQQIS 727 (818)
Q Consensus 680 v~PDivtlgKgLggGy~Pl-sAvl~~~~i~~-~l~-------~~--~~-----------~~----------~~~l~~~l~ 727 (818)
+...+.+++|.++|+..++ |++++++++++ .+. .. .. .+ .+.+.+.++
T Consensus 202 ~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~ 281 (398)
T 1gc0_A 202 ADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLA 281 (398)
T ss_dssp CSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 5444558999999765787 77888877554 221 11 00 00 012344556
Q ss_pred cCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee---c---------
Q 003466 728 SHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP---L--------- 777 (818)
Q Consensus 728 ~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p---~--------- 777 (818)
+++.+..+ ++.|.++.+++... .....+.+.+.|++.+. +
T Consensus 282 ~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~ 351 (398)
T 1gc0_A 282 RQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG----------IGAGRRFMNALQLFSRAVSLGDAESLAQHP 351 (398)
T ss_dssp TCTTEEEEEEC----------------CCTTEEEEEETTH----------HHHHHHHHHHCSSSEECSCCSCSSCEEECG
T ss_pred cCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC----------HHHHHHHHHhCCCceeccCCCCcceeeecc
Confidence 66655443 24678888877532 12344556667777653 1
Q ss_pred -------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 778 -------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 778 -------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.+.||+++++..++++|+.+.++|+++
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 352 ASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp GGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 278999999999999999999888754
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=165.00 Aligned_cols=279 Identities=16% Similarity=0.089 Sum_probs=181.1
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
+|+|.+|+.+++.. +. .....+...++.++|+++++.+ ..+.++|+++|++|+..+++.+.
T Consensus 12 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-------------- 73 (353)
T 2yrr_A 12 PERVQKALLRPMRG--HL--DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-------------- 73 (353)
T ss_dssp CHHHHGGGGSCCCC--TT--CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS--------------
T ss_pred CHHHHHHHhccccc--cc--CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc--------------
Confidence 79999999888764 11 0012345788999999988742 12579999999999999998761
Q ss_pred CCCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
+ .+|++.+.+||+.... .....|.. ...++.+..+
T Consensus 74 --------~-d~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------- 109 (353)
T 2yrr_A 74 --------R-GPVLVLVNGAFSQRVAEMAALHGLD----------------------------PEVLDFPPGE------- 109 (353)
T ss_dssp --------C-CCEEEEECSHHHHHHHHHHHHTTCC----------------------------EEEEECCTTS-------
T ss_pred --------C-CcEEEEcCCCchHHHHHHHHHcCCc----------------------------eEEEeCCCCC-------
Confidence 1 3688888899975111 11111111 0011111000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+.+ .++++|+++.. ++..|.+.+ +++|.++|++||+
T Consensus 110 ----~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~ 155 (353)
T 2yrr_A 110 ----PVD------------------PEAVARALKR-------RRYRMVALVHG-ETSTGVLNP----AEAIGALAKEAGA 155 (353)
T ss_dssp ----CCC------------------HHHHHHHHHH-------SCCSEEEEESE-ETTTTEECC----HHHHHHHHHHHTC
T ss_pred ----CCC------------------HHHHHHHHHh-------CCCCEEEEEcc-CCCcceecC----HHHHHHHHHHcCC
Confidence 011 2566777752 15668888887 888898876 8899999999999
Q ss_pred cEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCCccccceeecchHHHhhccC--------------------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVG-------------------- 713 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~~~i~~~l~~-------------------- 713 (818)
++|+||++ ++|+.. .....+ .+|++++ +|.++|+ .++|++++++++++.+..
T Consensus 156 ~li~D~a~-~~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (353)
T 2yrr_A 156 LFFLDAVT-TLGMLP--FSMRAM--GVDYAFTGSQKCLSAP-PGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGY 229 (353)
T ss_dssp EEEEECTT-TTTTSC--CCHHHH--TCSEEECCTTSTTCCC-SSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCC
T ss_pred eEEEEcCc-cccccc--cccccc--CceEEEecCcccccCC-CceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCC
Confidence 99999999 677653 222333 3688875 6998876 357999999998865530
Q ss_pred -ChH-------------HHH---------------HHHHHHHHcCCCeeEEE---eeeeEEEEEEecCcccCCCchHHHH
Q 003466 714 -DSK-------------LWD---------------LELIQQISSHRTVQRVV---ALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 714 -~~~-------------~~~---------------~~l~~~l~~~~~v~~vr---g~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
... .+. +.+.+.+++.+ +.-+. ..+.++.+.+... ..+.
T Consensus 230 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~--------~~~~ 300 (353)
T 2yrr_A 230 HHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARG-FRPYPKASPLPTVLVVRPPEG--------VDAD 300 (353)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CEESCSSSBCTTEEEEECCTT--------CCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC-CccccCccCCCeEEEEECCCC--------CCHH
Confidence 000 010 11233344442 21111 1355556665321 1255
Q ss_pred HHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHH-HHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCS-QLLLKLYQRLEE 807 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId-~~~~~l~~~l~~ 807 (818)
.+.+.|.++||++.++ ++.+|+.++...+++|++ +++++|++++++
T Consensus 301 ~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 301 RLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp HHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 7889999999999873 378999998888999999 999999988753
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=166.55 Aligned_cols=286 Identities=12% Similarity=0.045 Sum_probs=181.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|||+.++.... .|++.+|+.+++++..+ ...+...++.++|+++++. +.+++++||++|++.+++
T Consensus 31 ~~id~~~~~~~~------~~~v~~a~~~~~~~~~y-----~~~~~~~~l~~~la~~~~~---~~~v~~~~Gt~a~~~~l~ 96 (399)
T 2oga_A 31 PFLDLKAAYEEL------RAETDAAIARVLDSGRY-----LLGPELEGFEAEFAAYCET---DHAVGVNSGMDALQLALR 96 (399)
T ss_dssp CSCCHHHHHHHT------HHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHTTS---SEEEEESCHHHHHHHHHH
T ss_pred cccccCcCCCCC------CHHHHHHHHHHHhcCCC-----CCchhHHHHHHHHHHHHCC---CeEEEecCHHHHHHHHHH
Confidence 799998866542 28999999999876322 1246788999999999874 578899999999999998
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.+ + -+. ..+|++...+||+. ..++...|....
T Consensus 97 ~~-~---~~~----------------gd~vl~~~~~~~~~-~~~~~~~g~~~~--------------------------- 128 (399)
T 2oga_A 97 GL-G---IGP----------------GDEVIVPSHTYIAS-WLAVSATGATPV--------------------------- 128 (399)
T ss_dssp HT-T---CCT----------------TCEEEEESSSCTHH-HHHHHHTTCEEE---------------------------
T ss_pred Hh-C---CCC----------------cCEEEECCCccHHH-HHHHHHCCCEEE---------------------------
Confidence 76 1 111 23789999999883 333433332110
Q ss_pred eeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 560 ~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
.++... .+ ..| .+.+++.+. .++++|++++. .|.+.+
T Consensus 129 -~~~~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~n~----tG~~~~ 166 (399)
T 2oga_A 129 -PVEPHEDHP-----------TLD------------------PLLVEKAIT--------PRTRALLPVHL----YGHPAD 166 (399)
T ss_dssp -EECBCSSSS-----------SBC------------------HHHHHHHCC--------TTEEEECCBCG----GGCCCC
T ss_pred -EEecCCCCC-----------CcC------------------HHHHHHhcC--------CCCeEEEEeCC----cCCccC
Confidence 011000 00 111 255666664 25777876553 455554
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec----ccccC-Cccccceeecc-hHHHhhcc
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDSFV 712 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLgg-Gy~PlsAvl~~-~~i~~~l~ 712 (818)
+++|.++|++||+++|+||+++ +|.... ...++..+|++++| |.+|+ | +.|+++++ +++++.+.
T Consensus 167 ----l~~i~~l~~~~~~~li~Dea~~-~g~~~~---~~~~~~~~di~~~S~~~sK~~~~~G--~~g~~~~~~~~~~~~l~ 236 (399)
T 2oga_A 167 ----MDALRELADRHGLHIVEDAAQA-HGARYR---GRRIGAGSSVAAFSFYPGKNLGCFG--DGGAVVTGDPELAERLR 236 (399)
T ss_dssp ----HHHHHHHHHHHTCEECEECTTC-TTCEET---TEETTCTTCEEEEECCTTSSSCCSS--CCEEEEESCHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCEEEEECccc-ccCccC---CeecccccCEEEEeCCCCccCCcCC--ceEEEEeCCHHHHHHHH
Confidence 8999999999999999999995 432211 12234447999885 99988 6 68888886 77755331
Q ss_pred ---CC-----------------hH-----------H----------HHHHHHHHHHcCCCeeE--E--EeeeeEEEEEEe
Q 003466 713 ---GD-----------------SK-----------L----------WDLELIQQISSHRTVQR--V--VALGTLCAIELQ 747 (818)
Q Consensus 713 ---~~-----------------~~-----------~----------~~~~l~~~l~~~~~v~~--v--rg~Gl~~~iel~ 747 (818)
.. .. . +.+.+.+.+++.+.+.- . .+.+.++.+.+.
T Consensus 237 ~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (399)
T 2oga_A 237 MLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVR 316 (399)
T ss_dssp HHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEE
T ss_pred HHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEE
Confidence 10 01 0 01112333444432211 0 122332223332
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEeecC----------------------------CEEEEECCCCChHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRPLG----------------------------NVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g----------------------------~~ir~~ppl~~t~edId~~~~ 799 (818)
.. .+..+.+.|.++||++++.. +.+|+.++..+|++|++++++
T Consensus 317 ~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~ 387 (399)
T 2oga_A 317 TE---------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVID 387 (399)
T ss_dssp CS---------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHH
T ss_pred CC---------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHH
Confidence 11 14568889999999998621 469999999999999999999
Q ss_pred HHHHHHHHH
Q 003466 800 KLYQRLEEF 808 (818)
Q Consensus 800 ~l~~~l~~l 808 (818)
+|+++++++
T Consensus 388 ~l~~~~~~l 396 (399)
T 2oga_A 388 AVREWAERV 396 (399)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHh
Confidence 999887654
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-14 Score=161.46 Aligned_cols=277 Identities=12% Similarity=0.083 Sum_probs=176.6
Q ss_pred CCChhHHHHHHHHHhccCCCC--------CCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEE
Q 003466 440 NVYEPALECAELLLQGVGKGW--------ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~--------l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (818)
+..+...++++.+.+..+... .+.++++++|++|+..+++... ..| ..|++
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~g----------------d~Vlv 137 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-----NPG----------------DNVLL 137 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-----CCC----------------CEEEE
Confidence 344566777777766554321 1489999999999999999761 222 37999
Q ss_pred EcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhccc
Q 003466 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (818)
Q Consensus 512 ~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~ 591 (818)
.+.+||+.... +...|.. .+.+|... + ..|
T Consensus 138 ~~p~y~~~~~~-~~~~g~~------------------------------~~~v~~~~--------~--~~d--------- 167 (425)
T 2r2n_A 138 DEPAYSGTLQS-LHPLGCN------------------------------IINVASDE--------S--GIV--------- 167 (425)
T ss_dssp ESSCCHHHHHH-HGGGTCE------------------------------EEEECEET--------T--EEC---------
T ss_pred eCCCcHHHHHH-HHHcCCE------------------------------EEEeCcCC--------C--CCC---------
Confidence 99999985432 2222211 01111000 0 011
Q ss_pred CchhHHHHHHHHHHHHHhcCCCC----CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcc
Q 003466 592 DSSDLASIYSSYISQNLLQNPGL----KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (818)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~----~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfG 667 (818)
.+.|++.+.+.... ....++++|++.|..++..|.+. +.+.+++|.++|++||+++|.||++++|.
T Consensus 168 ---------~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~li~De~~~~~~ 237 (425)
T 2r2n_A 168 ---------PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSL-TSERKKEIYELARKYDFLIIEDDPYYFLQ 237 (425)
T ss_dssp ---------HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred ---------HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 25677777521000 01135678888775578788765 88999999999999999999999999886
Q ss_pred cCCcc----chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh--------H--------HHHH-------
Q 003466 668 RLGVE----TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS--------K--------LWDL------- 720 (818)
Q Consensus 668 RtG~~----~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~--------~--------~~~~------- 720 (818)
..|.. ......+....+.++||.++.| +++|++++++++++.+.... . .+..
T Consensus 238 ~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~ 316 (425)
T 2r2n_A 238 FNKFRVPTFLSMDVDGRVIRADSFSKIISSG-LRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFM 316 (425)
T ss_dssp SSSSCCCCTGGGCTTSCEEEEEESTTTTCST-TCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccCCCCCEEEEccchhhccCc-cceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHH
Confidence 66642 2222233344566999999988 79999999999887653210 0 1110
Q ss_pred ---------------HHHHHHHc-CCCeeEE--EeeeeEEEEEEecCcccCCCchHHHHH-HHHHHHhCCceEeec----
Q 003466 721 ---------------ELIQQISS-HRTVQRV--VALGTLCAIELQAAGCNAGYGSLYAAS-LLKKLREDGVYMRPL---- 777 (818)
Q Consensus 721 ---------------~l~~~l~~-~~~v~~v--rg~Gl~~~iel~~~~~~~~~~~~~a~~-~~~~l~e~Gvlv~p~---- 777 (818)
.+.+.+++ .+.+..+ ...|.++.+++.... .+.. +.+.|.++||++.|+
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~--------~~~~~~~~~l~~~gv~v~pg~~f~ 388 (425)
T 2r2n_A 317 AHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN--------DVKELIEEKAVKMGVLMLPGNAFY 388 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS--------CCHHHHHTHHHHTTEECEEGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC--------CHHHHHHHHHHHCCcEEechhhhc
Confidence 11223333 3433222 345777777775321 0223 467788999999872
Q ss_pred ------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 778 ------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 778 ------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+.+|+.++. .++++|++++++|.+++++
T Consensus 389 ~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 389 VDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp SSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 2689999874 5999999999999998865
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-14 Score=155.71 Aligned_cols=299 Identities=12% Similarity=0.040 Sum_probs=184.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCC-----CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~-----~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
-|||+.+ .+.. +|++.+|+.+++.+........ ...+...++.++|+++++.+ .+.++++++|++|+
T Consensus 2 iyld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~~~a~ 73 (382)
T 4hvk_A 2 AYFDYTS------AKPV-DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTT------CCCC-CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSHHHHH
T ss_pred EeecCCC------cCCC-CHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEECCchHHH
Confidence 3788765 3456 9999999999997642211111 11345668889999988743 35799999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc--cCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~--tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
+.+++.+.. .....| ..||+.+..|++.......+ .|..
T Consensus 74 ~~~~~~~~~-~~~~~g----------------d~vi~~~~~~~~~~~~~~~~~~~g~~---------------------- 114 (382)
T 4hvk_A 74 NLAIIGYAM-RNARKG----------------KHILVSAVEHMSVINPAKFLQKQGFE---------------------- 114 (382)
T ss_dssp HHHHHHHHH-HHGGGC----------------CEEEEETTCCHHHHHHHHHHHHTTCE----------------------
T ss_pred HHHHHHhhh-hhcCCC----------------CEEEECCCCcHHHHHHHHHHHhcCCE----------------------
Confidence 999997732 222222 36777777777643222111 1111
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
...++....+ ..| .+.+++.+. .++++|++++. ++.
T Consensus 115 ------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~np 150 (382)
T 4hvk_A 115 ------VEYIPVGKYG-----------EVD------------------VSFIDQKLR--------DDTILVSVQHA-NNE 150 (382)
T ss_dssp ------EEEECBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEECCSB-CTT
T ss_pred ------EEEeccCCCC-----------CcC------------------HHHHHHHhc--------cCceEEEEECC-CCC
Confidence 0011110000 011 255666664 35789999997 888
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHH--H
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAV--F 708 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i--~ 708 (818)
.|.+.+ +++|.++|++||+ +|+||+++ +|.. .+....++ +|+++ ++|.+| + ..+|+++++++. .
T Consensus 151 tG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~g-~-~g~g~~~~~~~~~~~ 218 (382)
T 4hvk_A 151 IGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKIG--ADMLTISSNDIYG-P-KGVGALWIRKEAKLQ 218 (382)
T ss_dssp TCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHHT--CSEEEEESGGGTS-C-TTCEEEEEETTCCCC
T ss_pred ceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhcC--CCEEEEeHHHhcC-C-CceEEEEEcCccCcC
Confidence 998876 8999999999999 99999994 4322 12222333 57775 559543 2 347788877653 1
Q ss_pred hhcc---------CCh---H----------HH--------------HHHHHHHHHcCCCeeEEE----eeeeEEEEEEec
Q 003466 709 DSFV---------GDS---K----------LW--------------DLELIQQISSHRTVQRVV----ALGTLCAIELQA 748 (818)
Q Consensus 709 ~~l~---------~~~---~----------~~--------------~~~l~~~l~~~~~v~~vr----g~Gl~~~iel~~ 748 (818)
..+. ... . .+ .+.+.+.++..+.+.-.. ..+.++.+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T 4hvk_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY 298 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT
T ss_pred cccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECC
Confidence 1110 000 0 00 112333444455432211 112355555532
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
. .+..+.+.|.++||+++++ .+.+|+.+...+|++|+++++++|+++
T Consensus 299 ~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~ 369 (382)
T 4hvk_A 299 I---------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp C---------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1 1456788999999999863 478999999999999999999999999
Q ss_pred HHHHHH
Q 003466 805 LEEFDK 810 (818)
Q Consensus 805 l~~l~~ 810 (818)
++++.+
T Consensus 370 ~~~~~~ 375 (382)
T 4hvk_A 370 IERLRS 375 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-15 Score=165.76 Aligned_cols=179 Identities=13% Similarity=0.078 Sum_probs=118.8
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-h--cccCCCCcEEEecccccCC
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-A--DLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~--e~~gv~PDivtlgKgLggG 694 (818)
.++.+|++... ++..|.+. |.+.+++|.++|++||+++|+||++..+ ..+..+. . ...+....+.++||.++.|
T Consensus 179 ~~~~~v~~~~p-~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G 255 (417)
T 3g7q_A 179 EETGMICVSRP-TNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPG 255 (417)
T ss_dssp TTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTT
T ss_pred cCceEEEECCC-CCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhccCCC
Confidence 35677777664 78888766 7778999999999999999999999532 2221111 0 0112222367899976677
Q ss_pred ccccceeecchHHHhhccCChH----------------HH-------------H-------HHHHHHHHc-CCC--eeE-
Q 003466 695 VIPLAATLATNAVFDSFVGDSK----------------LW-------------D-------LELIQQISS-HRT--VQR- 734 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~----------------~~-------------~-------~~l~~~l~~-~~~--v~~- 734 (818)
+++|++++++++++.+..... .+ . +.+.+.+.+ .+. +.-
T Consensus 256 -~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 334 (417)
T 3g7q_A 256 -SRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIH 334 (417)
T ss_dssp -SCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEE
T ss_pred -cceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceee
Confidence 799999999998876542111 00 0 011223332 332 221
Q ss_pred EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--------------CCEEEEECCCCChHHHHHHHHHH
Q 003466 735 VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------GNVIYLMCGPCSSPEVCSQLLLK 800 (818)
Q Consensus 735 vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------------g~~ir~~ppl~~t~edId~~~~~ 800 (818)
....|+++.+++.... ..+..+++.|.++||++.++ .+.+|+.++. ++++|++++++
T Consensus 335 ~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~ 405 (417)
T 3g7q_A 335 KPEGAIFLWLWFKDLP-------ITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKI 405 (417)
T ss_dssp CCCBSSEEEEECTTCS-------SCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHH
T ss_pred CCCcceEEEEEcCCCC-------CCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHH
Confidence 2345777777775411 12456888899999999872 2589999985 89999999999
Q ss_pred HHHHHHHHH
Q 003466 801 LYQRLEEFD 809 (818)
Q Consensus 801 l~~~l~~l~ 809 (818)
|.++++++.
T Consensus 406 l~~~l~~~~ 414 (417)
T 3g7q_A 406 LAEEIERAW 414 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=167.11 Aligned_cols=302 Identities=12% Similarity=0.067 Sum_probs=184.3
Q ss_pred ceeecccccccccCCCCCC--HHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccC---CCCCC--cEEEeCCh
Q 003466 400 QQFDACASWWTQGPDATLQ--IELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVG---KGWAS--RAYFSDNG 470 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~h--p~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~---~~~l~--~v~f~~SG 470 (818)
.+||+..|++...-|+. + |.|.+|+.++++.... +....+..+...++++.+....+ . .+ .++++++|
T Consensus 50 ~~i~l~~G~y~d~~~~~-~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~--~~~~~i~~t~G~ 126 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGKI-PLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIA--AGRVVTAQALGG 126 (420)
T ss_dssp SCEECCCCSCCCTTSCC-CCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--TTCEEEEEEEHH
T ss_pred CcEEeeeeeeECCCCCc-cCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccc--cCceEEEECCcc
Confidence 78999999887888877 6 8999999999886221 11122334556666666654322 1 24 78999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++|++.++++. ... ..| .+|++.+.+|++....... .|...
T Consensus 127 t~al~~~~~~~-~~~--~~g----------------d~Vlv~~p~~~~~~~~~~~-~g~~~------------------- 167 (420)
T 4f4e_A 127 TGALKIGADFL-RTL--NPK----------------AKVAISDPSWENHRALFDM-AGFEV------------------- 167 (420)
T ss_dssp HHHHHHHHHHH-HHH--CTT----------------CCEEEEESCCHHHHHHHHH-TTCCE-------------------
T ss_pred HHHHHHHHHHH-HHh--CCC----------------CEEEEeCCCcHhHHHHHHH-cCCeE-------------------
Confidence 99999998865 222 122 3688999999875433222 22110
Q ss_pred CcccccCcceeecC--cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 551 PTVFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 551 p~~~~~~~~~~v~~--P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
..++. ++.+ -.| .+.+++.+.+ .+.+..++++...
T Consensus 168 ---------~~v~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~v~i~~p 204 (420)
T 4f4e_A 168 ---------VAYPYYDAKTN-----------GVN------------------FDGMLAALNG-----YEPGTIVVLHACC 204 (420)
T ss_dssp ---------EEEECEETTTT-----------EEC------------------HHHHHHHHTT-----CCTTCEEEEECSS
T ss_pred ---------EEeeeeccccC-----------ccC------------------HHHHHHHHHh-----CCCCCEEEEeCCC
Confidence 01111 0000 001 2567777763 3456778888875
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc--cchhcc-cCCCCc---EEEeccccc-CCcccccee
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADL-LGCVPD---IACYGKLLT-GGVIPLAAT 701 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~--~~a~e~-~gv~PD---ivtlgKgLg-gGy~PlsAv 701 (818)
++..|.+. +.+.+++|.++|++||+++|+||++++|+..|. ...... .+..++ +.++||.+| .| +++|++
T Consensus 205 -~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~ 281 (420)
T 4f4e_A 205 -HNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYG-ERVGAL 281 (420)
T ss_dssp -CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCEEEE
T ss_pred -CCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcC-CCcEEE
Confidence 88888766 788899999999999999999999999976542 222221 122333 337999999 57 799987
Q ss_pred ec---chHHHhh----cc--------C-ChH------------H----HHH--------------HHHHHHHcC---CCe
Q 003466 702 LA---TNAVFDS----FV--------G-DSK------------L----WDL--------------ELIQQISSH---RTV 732 (818)
Q Consensus 702 l~---~~~i~~~----l~--------~-~~~------------~----~~~--------------~l~~~l~~~---~~v 732 (818)
++ ++++++. +. . ... . +.+ .+.+.|+++ +.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 361 (420)
T 4f4e_A 282 SIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDF 361 (420)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 53 4554332 11 0 000 0 111 122333443 122
Q ss_pred eEE-EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 733 QRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 733 ~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.-. ...|++.-+.+. ...+.+.|.++||++.+.+ |+.+. .+++++|++++++|.+++
T Consensus 362 ~~~~~~~g~~~~~~~~------------~~~~~~~l~~~gI~v~~~~---Ris~~-~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 362 SFINAQRGMFSYSGLT------------SAQVDRLREEFGIYAVSTG---RICVA-ALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp THHHHSCSSEEECCCC------------HHHHHHHHHHHCEECCTTS---EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred eeECCCccEEEEeCCC------------HHHHHHHHHhCCEEecCCC---eEEEe-cCCHHHHHHHHHHHHHHh
Confidence 111 223443332221 2245666778999999865 66664 457888999999998875
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=168.57 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=143.9
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|+++.+. +.+++++||++|++++++++ +.| ..||+.+..|||
T Consensus 63 r~~~p~~~~l~~~la~l~g~---~~~~~~~sG~~Ai~~~~~l~------~~g----------------d~Vi~~~~~y~~ 117 (400)
T 3nmy_A 63 RTHNPTRFAYERCVAALEGG---TRAFAFASGMAATSTVMELL------DAG----------------SHVVAMDDLYGG 117 (400)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTS------CTT----------------CEEEEESSCCHH
T ss_pred cCCCHHHHHHHHHHHHHhCC---CCEEEecCHHHHHHHHHHHc------CCC----------------CEEEEeCCCchH
Confidence 35678899999999999873 58999999999999865433 122 378888888887
Q ss_pred Cccccccc----cCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCch
Q 003466 519 DTLGAMEA----QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (818)
Q Consensus 519 ~t~~als~----tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~ 594 (818)
.......+ .|.. .+.+| ++|
T Consensus 118 ~~~~~~~~~~~~~g~~------------------------------~~~v~--------------~~d------------ 141 (400)
T 3nmy_A 118 TFRLFERVRRRTAGLD------------------------------FSFVD--------------LTD------------ 141 (400)
T ss_dssp HHHHHHHTHHHHHCCE------------------------------EEEEC--------------TTS------------
T ss_pred HHHHHHHhhHhhcCeE------------------------------EEEEC--------------CCC------------
Confidence 44222111 0100 00001 222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch
Q 003466 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (818)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a 674 (818)
.+.+++.+. .++++|++|++ ++..|.+.+ +++|+++|++||++||+||+++. |.++.
T Consensus 142 ------~~~l~~~i~--------~~~~~v~~e~~-~np~G~~~~----l~~i~~la~~~g~~livDe~~~~----~~~~~ 198 (400)
T 3nmy_A 142 ------PAAFKAAIR--------ADTKMVWIETP-TNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS----PMLQR 198 (400)
T ss_dssp ------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH----HHHCC
T ss_pred ------HHHHHHHhc--------cCCCEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc----cccCC
Confidence 255666664 36899999997 899998885 99999999999999999999952 22222
Q ss_pred hcccCCCCcEEEecccccCCccccce--ee-cchHHHhhccCChH-----------------------HHH------HHH
Q 003466 675 ADLLGCVPDIACYGKLLTGGVIPLAA--TL-ATNAVFDSFVGDSK-----------------------LWD------LEL 722 (818)
Q Consensus 675 ~e~~gv~PDivtlgKgLggGy~PlsA--vl-~~~~i~~~l~~~~~-----------------------~~~------~~l 722 (818)
...+|+.+.+.+++|.++|+..++++ ++ .++++++.+..... .++ ..+
T Consensus 199 ~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l 278 (400)
T 3nmy_A 199 PLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRAHCENALAL 278 (400)
T ss_dssp GGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 22345444455699999986566655 44 36677665432111 000 123
Q ss_pred HHHHHcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHH
Q 003466 723 IQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR 768 (818)
Q Consensus 723 ~~~l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~ 768 (818)
.+.++++|.+..| +|.|.|++|++..+. +.+..|.+.|.
T Consensus 279 ~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-------~~~~~~~~~l~ 335 (400)
T 3nmy_A 279 AQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-------DAAKRFCEKTE 335 (400)
T ss_dssp HHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-------HHHHHHHHHCS
T ss_pred HHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-------HHHHHHHHcCC
Confidence 4456778888888 889999999996431 33555666554
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=165.07 Aligned_cols=283 Identities=12% Similarity=0.046 Sum_probs=179.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCC-cEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~-~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
+|++.+|+.+++... .. ....+...++.++|+++++.+ .+ .++++++|++|++.+++.+. +.|
T Consensus 31 ~~~v~~a~~~~~~~~--~~--~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~-----~~g------ 94 (393)
T 2huf_A 31 PQRVLDAMSRPILGH--LH--PETLKIMDDIKEGVRYLFQTN-NIATFCLSASGHGGMEATLCNLL-----EDG------ 94 (393)
T ss_dssp CHHHHHHTTSCCCCT--TS--HHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHHHHHC-----CTT------
T ss_pred CHHHHHHHHhhhccC--CC--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHHh-----CCC------
Confidence 899999998877541 10 112356788999999988753 23 68999999999999999761 122
Q ss_pred CCCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
.+|++.+.+||+.....+ ...|.. ...++.+..+
T Consensus 95 ----------d~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------- 129 (393)
T 2huf_A 95 ----------DVILIGHTGHWGDRSADMATRYGAD----------------------------VRVVKSKVGQ------- 129 (393)
T ss_dssp ----------CEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC-------
T ss_pred ----------CEEEEECCCcchHHHHHHHHHcCCe----------------------------eEEEeCCCCC-------
Confidence 379999999998421111 101111 0011111000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+.+ .++++|+++.. ++..|.+.+ +++|.++|++||+
T Consensus 130 ----~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~ 175 (393)
T 2huf_A 130 ----SLS------------------LDEIRDALLI-------HKPSVLFLTQG-DSSTGVLQG----LEGVGALCHQHNC 175 (393)
T ss_dssp ----CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTC
T ss_pred ----CCC------------------HHHHHHHHhc-------cCCcEEEEEcc-CCCccccCC----HHHHHHHHHHcCC
Confidence 111 2556666652 14568888886 888898876 8999999999999
Q ss_pred cEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccCC-------------------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD------------------- 714 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~~------------------- 714 (818)
++|+||++ ++|... .....+ .+|+++++ |.++|+ .++|++++++++++.+...
T Consensus 176 ~li~D~a~-~~~~~~--~~~~~~--~~d~~~~s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (393)
T 2huf_A 176 LLIVDTVA-SLGGAP--MFMDRW--EIDAMYTGSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWG 249 (393)
T ss_dssp EEEEECTT-TBTTBC--CCTTTT--TCSEEECCSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTT
T ss_pred EEEEEccc-ccCCCC--cchhhc--CccEEEECCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhc
Confidence 99999998 455432 112222 47888654 998875 3568899998887653210
Q ss_pred ----------hH-------------HH---------------HHHHHHHHHcCCC--eeEEE-eeeeEEEEEEecCcccC
Q 003466 715 ----------SK-------------LW---------------DLELIQQISSHRT--VQRVV-ALGTLCAIELQAAGCNA 753 (818)
Q Consensus 715 ----------~~-------------~~---------------~~~l~~~l~~~~~--v~~vr-g~Gl~~~iel~~~~~~~ 753 (818)
.. .+ .+.+.+.+++.+. +.... ..+.++.+.+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---- 325 (393)
T 2huf_A 250 CFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQG---- 325 (393)
T ss_dssp CSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTT----
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCC----
Confidence 00 00 0112333444321 11100 1244666666321
Q ss_pred CCchHHHHHHHHHHHhC-CceEeec-----CCEEEEEC-CCCChHHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~p-pl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+.+.|+++ ||++++. ++.+|+.+ +...+++++++++++|+++++++.
T Consensus 326 ----~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 326 ----VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp ----CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 1245688888865 9999873 47899999 667789999999999999988764
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=156.88 Aligned_cols=299 Identities=13% Similarity=0.072 Sum_probs=178.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
++||+.++.. .. - .|++.+|+.+....... .+..+...+|.++|+++++. +.+++++||++|+..+++
T Consensus 4 ~~i~~~~~~~---~~-p-~~~~~~a~~~~~~~~~~----y~~~~~~~~l~~~la~~~g~---~~~~~~~~gt~a~~~~~~ 71 (347)
T 1jg8_A 4 MMIDLRSDTV---TK-P-TEEMRKAMAQAEVGDDV----YGEDPTINELERLAAETFGK---EAALFVPSGTMGNQVSIM 71 (347)
T ss_dssp -CEECSCGGG---CC-C-CHHHHHHHHTCCCCCGG----GTCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHH
T ss_pred eEEEeccccC---CC-C-CHHHHHHHhcCCCCCcc----cCCChHHHHHHHHHHHHhCC---ceEEEecCcHHHHHHHHH
Confidence 6789887433 33 5 78999999765421111 12355677999999999873 688999999999999987
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccc---ccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a---ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
.. .+.| .+|++.+. +|+.++.. ....|...
T Consensus 72 ~~-----~~~g----------------d~Vl~~~~-~~~~~~~~~~~~~~~g~~~------------------------- 104 (347)
T 1jg8_A 72 AH-----TQRG----------------DEVILEAD-SHIFWYEVGAMAVLSGVMP------------------------- 104 (347)
T ss_dssp HH-----CCTT----------------CEEEEETT-CHHHHSSTTHHHHHTCCEE-------------------------
T ss_pred Hh-----cCCC----------------CEEEEcCc-chhhhccccchhhccCeEE-------------------------
Confidence 65 1222 25666555 45443321 11111110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC-Cc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG-GM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g-G~ 635 (818)
..+ .+..+ ..| .+.+++.+.... ....++++|++++. ++.. |.
T Consensus 105 ---~~v-~~~~~-----------~~d------------------~~~l~~~i~~~~--~~~~~~~~v~~~~~-~npt~G~ 148 (347)
T 1jg8_A 105 ---HPV-PGKNG-----------AMD------------------PDDVRKAIRPRN--IHFPRTSLIAIENT-HNRSGGR 148 (347)
T ss_dssp ---EEE-CEETT-----------EEC------------------HHHHHHHSCCSC--TTSCCEEEEEEESS-BTTTTSB
T ss_pred ---EEe-cCCCC-----------ccC------------------HHHHHHHhcccc--ccccCceEEEEecc-ccccCCc
Confidence 001 00000 011 256666664200 01136889999987 7776 65
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCccc---CCccchhcccCCCCc--EEEecccccCCccccce-eecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR---LGVETTADLLGCVPD--IACYGKLLTGGVIPLAA-TLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR---tG~~~a~e~~gv~PD--ivtlgKgLggGy~PlsA-vl~~~~i~~ 709 (818)
+. |.+.+++|.++|++||+++|+||++. +|- .|.. ...+....| +++++|++++ |+|+ +++++++++
T Consensus 149 ~~-~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~ 221 (347)
T 1jg8_A 149 VV-PLENIKEICTIAKEHGINVHIDGARI-FNASIASGVP--VKEYAGYADSVMFCLSKGLCA---PVGSVVVGDRDFIE 221 (347)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCC--HHHHHHTCSEEEEESSSTTCC---SSCEEEEECHHHHH
T ss_pred cC-cHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCC--hHHhcccccEEEEecccccCC---CceEEEEcCHHHHH
Confidence 44 88899999999999999999999873 321 1211 111111234 3469999975 4674 556776665
Q ss_pred hcc------C-C---h-H--------------H------HHHHHHHHHHcCCC-eeEEEeeeeEEEEEEecCcccCCCch
Q 003466 710 SFV------G-D---S-K--------------L------WDLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 710 ~l~------~-~---~-~--------------~------~~~~l~~~l~~~~~-v~~vrg~Gl~~~iel~~~~~~~~~~~ 757 (818)
.+. . . . . . ..+.+.+.|++++. +......|.++.+.+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------- 294 (347)
T 1jg8_A 222 RARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK------- 294 (347)
T ss_dssp HHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS-------
T ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCCCcceEEEEEccccc-------
Confidence 331 1 0 0 0 0 01123334443322 1001123555556653210
Q ss_pred HHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 758 ~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
..+..+++.|.++||.+++.+ +.+|+.++..+|++|+++++++|.+++++
T Consensus 295 ~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 295 VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 125578889999999999864 78999998899999999999999988764
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=169.89 Aligned_cols=235 Identities=15% Similarity=0.061 Sum_probs=153.2
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|+++.+. +.+++++||++|++.|++.+ -+.| ..||+.+.+|||
T Consensus 77 r~~~p~~~~l~~~la~~~g~---~~~~~~~sG~~Ai~~al~~l-----~~~G----------------d~Vi~~~~~y~~ 132 (414)
T 3ndn_A 77 RYGNPTVSVFEERLRLIEGA---PAAFATASGMAAVFTSLGAL-----LGAG----------------DRLVAARSLFGS 132 (414)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTT-----CCTT----------------CEEEEESCCCHH
T ss_pred CCCChHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHH-----hCCC----------------CEEEEcCCccch
Confidence 45678899999999999873 68999999999999999865 1222 378999999998
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.... +... ....| ...+.+| .+|
T Consensus 133 ~~~~-~~~~-------------~~~~g-------------~~~~~v~--------------~~d---------------- 155 (414)
T 3ndn_A 133 CFVV-CSEI-------------LPRWG-------------VQTVFVD--------------GDD---------------- 155 (414)
T ss_dssp HHHH-HHTH-------------HHHTT-------------CEEEEEC--------------TTC----------------
T ss_pred HHHH-HHHH-------------HHHcC-------------cEEEEeC--------------CCC----------------
Confidence 3211 1100 00000 0001111 122
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.+. .++++|++|+. ++..|.+.+ +++|+++|++||+++|+||+++ +|.++....+
T Consensus 156 --~~~l~~ai~--------~~t~~v~le~p-~NptG~~~~----l~~i~~la~~~g~~livDe~~~----~~~~~~~~~~ 216 (414)
T 3ndn_A 156 --LSQWERALS--------VPTQAVFFETP-SNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA----TPLLQQGFPL 216 (414)
T ss_dssp --HHHHHHHTS--------SCCSEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT----HHHHCCCGGG
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCcccc----HHHHHHHHHHcCCEEEEECCCc----ccccCCchhc
Confidence 255666664 25679999997 899998875 9999999999999999999995 3333333356
Q ss_pred CCCCcEEEecccccC-CccccceeecchHHHh-hccCCh--------H-----------HH----------HHHHHHHHH
Q 003466 679 GCVPDIACYGKLLTG-GVIPLAATLATNAVFD-SFVGDS--------K-----------LW----------DLELIQQIS 727 (818)
Q Consensus 679 gv~PDivtlgKgLgg-Gy~PlsAvl~~~~i~~-~l~~~~--------~-----------~~----------~~~l~~~l~ 727 (818)
|+...+.+++|.+++ |.+++|+++++++.+. .+.... . .+ .+.+.+.|+
T Consensus 217 g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~ 296 (414)
T 3ndn_A 217 GVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLN 296 (414)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665555568999987 6578899999887665 332100 0 00 012344567
Q ss_pred cCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee
Q 003466 728 SHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 776 (818)
Q Consensus 728 ~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p 776 (818)
++|.+..| +|.|.+++|++..... ...+.+..|.+.|...++.+..
T Consensus 297 ~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~---~~~~~~~~~~~~l~~~~~~~s~ 360 (414)
T 3ndn_A 297 GHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED---VAKQRAFEVLDKMRLIDISNNL 360 (414)
T ss_dssp TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG---GHHHHHHHHHHHCSSSEECSCC
T ss_pred cCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc---ccHHHHHHHHHhCccceEcCCC
Confidence 77777655 5679999999964200 0014566778777766655543
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=164.68 Aligned_cols=301 Identities=12% Similarity=0.064 Sum_probs=179.8
Q ss_pred ceeecccccccccCCCCCC--HHHHHHHHH-hhhhccccc--CCCCCChhHHHHHHHHHhccC---CCCCC--cEEEeCC
Q 003466 400 QQFDACASWWTQGPDATLQ--IELARDMGY-TAARFGHVM--FPENVYEPALECAELLLQGVG---KGWAS--RAYFSDN 469 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~h--p~V~eAi~~-q~~~~~~~~--~~~~~~~~~~eLae~L~~~~~---~~~l~--~v~f~~S 469 (818)
.+||+..|++.++.|+. + |+|.+|+.+ +++...... ...+..+...++++.+....+ . .+ .++++++
T Consensus 27 ~~i~l~~g~y~d~~~~~-~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~--~~~~~i~~t~g 103 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGII-PQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK--QQRVATIQTLG 103 (397)
T ss_dssp CCEECSSCCCCCTTSCC-CCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--TTCEEEEEESH
T ss_pred CeEEEeeeEEECCCCCc-cCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc--ccceEEEEcCC
Confidence 68999998877777776 5 899999999 887532211 112334555666666654322 1 25 7899999
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccC
Q 003466 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 470 GseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
|++|++.++++. .... .| .+|++...+|++...... ..|...
T Consensus 104 ~~~a~~~~~~~~-~~~~--~g----------------d~vl~~~p~~~~~~~~~~-~~g~~~------------------ 145 (397)
T 3fsl_A 104 GSGALKVGADFL-KRYF--PE----------------SGVWVSDPTWENHVAIFA-GAGFEV------------------ 145 (397)
T ss_dssp HHHHHHHHHHHH-HHHC--TT----------------CCEEEESSCCHHHHHHHH-HTTCCE------------------
T ss_pred cHHHHHHHHHHH-HhcC--CC----------------CeEEEeCCCchhHHHHHH-HcCCce------------------
Confidence 999999998865 3221 12 368899999987543222 222110
Q ss_pred CCcccccCcceeecC--cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 003466 550 PPTVFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~--P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP 627 (818)
..++. ++.+ --| .+.+++.+.+ ...+..++++..
T Consensus 146 ----------~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~v~~~~ 181 (397)
T 3fsl_A 146 ----------STYPWYDEATN-----------GVR------------------FNDLLATLKT-----LQAGSIVLLHPC 181 (397)
T ss_dssp ----------EEECCEETTTT-----------EEC------------------HHHHHHHHTT-----CCTTCEEEECSS
T ss_pred ----------EEEeeeeccCC-----------cCc------------------HHHHHHHHHh-----CCCCCEEEEeCC
Confidence 01111 0000 001 2567777763 234566777766
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC--ccchhcc----cCCCCcEEEeccccc-CCccccce
Q 003466 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADL----LGCVPDIACYGKLLT-GGVIPLAA 700 (818)
Q Consensus 628 V~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG--~~~a~e~----~gv~PDivtlgKgLg-gGy~PlsA 700 (818)
. ++..|.+. +.+.+++|.++|++||+++|+||++++|...+ ....... .+....+.++||.+| .| +++|+
T Consensus 182 p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~riG~ 258 (397)
T 3fsl_A 182 C-HNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG-ERVGG 258 (397)
T ss_dssp S-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCCEE
T ss_pred C-CCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcC-CCeeE
Confidence 4 78888766 78889999999999999999999999886543 2222211 222223447999998 68 79999
Q ss_pred eec---chHHHhhcc------------CCh-H-------H---------HHH--------------HHHHHHHcCC---C
Q 003466 701 TLA---TNAVFDSFV------------GDS-K-------L---------WDL--------------ELIQQISSHR---T 731 (818)
Q Consensus 701 vl~---~~~i~~~l~------------~~~-~-------~---------~~~--------------~l~~~l~~~~---~ 731 (818)
+++ ++++++.+. ... . . +.+ .+.+.+++++ .
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 338 (397)
T 3fsl_A 259 LSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERN 338 (397)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 864 444443211 000 0 0 011 1222333332 1
Q ss_pred eeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 732 VQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 732 v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
+.-.. ..|.+.-+.+. ...+.+.|.++||++.+++ |+... .+++++|++++++|+++
T Consensus 339 ~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~---Ris~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 339 FDYLLNQRGMFSYTGLS------------AAQVDRLREEFGVYLIASG---RMCVA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp CTHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTTC---EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred ceeecCCceEEEecCCC------------HHHHHHHHHhCCEEECCCC---eEEEE-ecCHhhHHHHHHHHHhh
Confidence 21111 22333332221 2235667778999999876 66664 45778899999999875
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-15 Score=165.29 Aligned_cols=287 Identities=13% Similarity=0.054 Sum_probs=163.8
Q ss_pred CCCCHHHHHHHHHhhh-hcccccC------CCCCChhHHHHH-HHHHhccCCCCCCcE-EEeCChhHHHHHHHHHHHHHh
Q 003466 415 ATLQIELARDMGYTAA-RFGHVMF------PENVYEPALECA-ELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~-~~~~~~~------~~~~~~~~~eLa-e~L~~~~~~~~l~~v-~f~~SGseA~e~ALklA~r~~ 485 (818)
+. ||+|++|+.+++. .+++... .....+...+++ +++++.++. +.+ ++++||++|++.|++.+
T Consensus 43 ~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~v~~~~Gs~a~~~al~~~---- 114 (425)
T 3ecd_A 43 IV-SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA---GHANVQPHSGAQANGAVMLAL---- 114 (425)
T ss_dssp CC-CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHH----
T ss_pred CC-CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC---CCceeecCchHHHHHHHHHHc----
Confidence 45 8999999999984 4432210 011123556776 677777763 455 45999999999999976
Q ss_pred hhcccccccccCCCccccccceEEEEEcCCCCCCc-ccccc-ccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeec
Q 003466 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (818)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t-~~als-~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~ 563 (818)
-..| ..|++.+.+||+.. .++.. ..+.. + ..++
T Consensus 115 -~~~g----------------d~Vi~~~~~~~~~~~~~~~~~~~g~~-~---------------------------~~~~ 149 (425)
T 3ecd_A 115 -AKPG----------------DTVLGMSLDAGGHLTHGAKPALSGKW-F---------------------------NALQ 149 (425)
T ss_dssp -CCTT----------------CEEEEECC-------------------C---------------------------EEEE
T ss_pred -cCCC----------------CEEEEcccccccceecchhhhhcccc-e---------------------------eeee
Confidence 1222 37899999888722 22211 11110 0 0001
Q ss_pred CcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCcccCCHHH
Q 003466 564 LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLF 642 (818)
Q Consensus 564 ~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG~~~~p~~f 642 (818)
+|..- +....| .+.+++.+.+ .++++|+++ |. + | ....
T Consensus 150 ~~~~~--------~~~~~d------------------~~~l~~~i~~-------~~~~~v~~~~~~-~---~----~~~~ 188 (425)
T 3ecd_A 150 YGVSR--------DTMLID------------------YDQVEALAQQ-------HKPSLIIAGFSA-Y---P----RKLD 188 (425)
T ss_dssp ECCCT--------TTSSCC------------------HHHHHHHHHH-------HCCSEEEEECSC-C---C----SCCC
T ss_pred cCCCc--------ccCccC------------------HHHHHHHHhh-------cCCcEEEEcccc-C---C----CcCC
Confidence 11000 000111 2566777752 235688888 54 3 2 2344
Q ss_pred HHHHHHHHHhcCCcEEEeecc-cCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecc-hHHHhhccC---C-
Q 003466 643 QRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLAT-NAVFDSFVG---D- 714 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~-~~i~~~l~~---~- 714 (818)
+++|+++|++||+++|+||+| +|+...|.++.... .+|+++ ++|+++|+ .+|+++++ +++.+.+.. .
T Consensus 189 l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~---~~di~~~s~sK~l~g~--~~g~~~~~~~~~~~~~~~~~~~~ 263 (425)
T 3ecd_A 189 FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE---HAHVVTSTTHKTLRGP--RGGFVLTNDEEIAKKINSAVFPG 263 (425)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSGGGCCC--SCEEEEESCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh---cCcEEEecCCcccCCC--CcEEEEeCCHHHHHHHHhhhCcc
Confidence 799999999999999999996 46656665433221 168874 56999653 47778887 455554321 0
Q ss_pred ---h---H--------H-----------------HHHHHHHHHHcCCCeeEEE--eeeeEEEEEEecCcccCCCchHHHH
Q 003466 715 ---S---K--------L-----------------WDLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 715 ---~---~--------~-----------------~~~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
. . . ..+.+.+.+.+.+. .-+. +.+.++.+.+.... ..+.
T Consensus 264 ~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~~~~~-------~~~~ 335 (425)
T 3ecd_A 264 LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGV-DLVTGGTDNHLLLVDLRPKG-------LKGA 335 (425)
T ss_dssp ---CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTC-EEGGGSCSSSEEEEECGGGT-------CCHH
T ss_pred ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCC-eeccCCCCceEEEEEeCCCC-------CCHH
Confidence 0 0 0 00122334444332 1111 34566666664321 1245
Q ss_pred HHHHHHHhCCceEe----ec-------CCEEEEECCCCCh----HHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMR----PL-------GNVIYLMCGPCSS----PEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~----p~-------g~~ir~~ppl~~t----~edId~~~~~l~~~l~~l 808 (818)
.+.+.|.++||++. |. .+.+|+.++...+ +++|++++++|.+++++.
T Consensus 336 ~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 336 QVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 67778889999998 32 1589999766554 999999999999999876
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-14 Score=153.70 Aligned_cols=299 Identities=12% Similarity=0.040 Sum_probs=186.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
-|||+.++ |+. +|+|++|+.++++.........+ ..+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 2 ~yld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 73 (382)
T 4eb5_A 2 AYFDYTSA------KPV-DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTTC------CCC-CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEESSHHHHH
T ss_pred eeeccCCC------CCC-CHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEcCchHHHH
Confidence 48887763 577 99999999999876321110001 1246788999999988743 25899999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc--cCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~--tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
+.+++.+.+++ ...| ..|++.+.+||+.......+ .|..
T Consensus 74 ~~~~~~l~~~~-~~~g----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~---------------------- 114 (382)
T 4eb5_A 74 NLAIIGYAMRN-ARKG----------------KHILVSAVEHMSVINPAKFLQKQGFE---------------------- 114 (382)
T ss_dssp HHHHHHHHHHH-GGGC----------------CEEEEETTCCHHHHHHHHHHTTTTCE----------------------
T ss_pred HHHHHHHHhhc-cCCC----------------CEEEECCCcchHHHHHHHHHHhCCcE----------------------
Confidence 99999873222 1222 36888888887643222211 1110
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
...++....+ ..| .+.+++.+. .++.+|+++.. ++.
T Consensus 115 ------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~np 150 (382)
T 4eb5_A 115 ------VEYIPVGKYG-----------EVD------------------VSFIDQKLR--------DDTILVSVQHA-NNE 150 (382)
T ss_dssp ------EEEECBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEECCSB-CTT
T ss_pred ------EEEeccCCCC-----------ccC------------------HHHHHHHhc--------CCCeEEEEecc-CCC
Confidence 0011110000 011 255666664 25778999987 888
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCCccccceeecchHH-Hh
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAV-FD 709 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~~~i-~~ 709 (818)
.|.+.+ +++|.++|++||++ |+||+++ +|... .....+ .+|+++. +|.+|- ..+|+++++++. +.
T Consensus 151 tG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~~--~~di~~~s~sK~~g~--~g~G~~~~~~~~~l~ 218 (382)
T 4eb5_A 151 IGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEKI--GADMLTISSNDIYGP--KGVGALWIRKEAKLQ 218 (382)
T ss_dssp TCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHHH--TCSEEEEETGGGTCC--SSCEEEEEETTCCCC
T ss_pred ccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCcccc--CCCEEEeehHHhcCC--CceEEEEEccccccC
Confidence 898876 89999999999999 9999995 65432 112222 4688754 696431 126778887763 22
Q ss_pred -hccC---------ChH-------------HHH--------------HHHHHHHHcCCCeeEEEe----eeeEEEEEEec
Q 003466 710 -SFVG---------DSK-------------LWD--------------LELIQQISSHRTVQRVVA----LGTLCAIELQA 748 (818)
Q Consensus 710 -~l~~---------~~~-------------~~~--------------~~l~~~l~~~~~v~~vrg----~Gl~~~iel~~ 748 (818)
.+.. ... .+. +.+.+.+++++.+.-+.. .+.++.+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T 4eb5_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY 298 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT
T ss_pred ceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC
Confidence 1110 000 111 112334444544322111 24466666642
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
. .+..+.+.|.++||++.+. .+.+|+.+...+|++|+++++++|.++
T Consensus 299 ~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 299 I---------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp S---------CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred c---------CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1 1456888899999999863 368999999889999999999999999
Q ss_pred HHHHHH
Q 003466 805 LEEFDK 810 (818)
Q Consensus 805 l~~l~~ 810 (818)
++++..
T Consensus 370 ~~~~~~ 375 (382)
T 4eb5_A 370 IERLRS 375 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=168.79 Aligned_cols=161 Identities=12% Similarity=-0.031 Sum_probs=117.9
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+++++|+++.+. +.+++++||++|++.|++.+. +. ...||+.+.+||+.
T Consensus 55 ~~~~~~~~l~~~la~~~g~---~~~v~~~sGt~A~~~~l~~~~-----~~----------------gd~vi~~~~~~~~~ 110 (421)
T 2ctz_A 55 IMNPTVDVLEKRLAALEGG---KAALATASGHAAQFLALTTLA-----QA----------------GDNIVSTPNLYGGT 110 (421)
T ss_dssp TBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEECSCCCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CceEEecCHHHHHHHHHHHHh-----CC----------------CCEEEEeCCCchHH
Confidence 4567889999999999974 467888999999999999761 11 24799999999985
Q ss_pred cccccc---ccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC-cchhhhhccccccccccCccchhhcccCchh
Q 003466 520 TLGAME---AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (818)
Q Consensus 520 t~~als---~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~ 595 (818)
...... ..|.. .+.+ | .+|
T Consensus 111 ~~~~~~~~~~~g~~------------------------------~~~~~~--------------~~d------------- 133 (421)
T 2ctz_A 111 FNQFKVTLKRLGIE------------------------------VRFTSR--------------EER------------- 133 (421)
T ss_dssp HHHHHTHHHHTTCE------------------------------EEECCT--------------TCC-------------
T ss_pred HHHHHHHHHHcCCE------------------------------EEEECC--------------CCC-------------
Confidence 533311 11110 0011 1 112
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh
Q 003466 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (818)
Q Consensus 596 ~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~ 675 (818)
.+.+++.|. .++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+|+++|..+..+
T Consensus 134 -----~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~g~~~~~~-- 193 (421)
T 2ctz_A 134 -----PEEFLALTD--------EKTRAWWVESI-GNPALNIPD----LEALAQAAREKGVALIVDNTFGMGGYLLRPL-- 193 (421)
T ss_dssp -----HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGGGTSCCGG--
T ss_pred -----HHHHHHhhc--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccccCCcc--
Confidence 155666664 36899999997 898998876 9999999999999999999998888766544
Q ss_pred cccCCCCcEE--EecccccCCccccceeecc
Q 003466 676 DLLGCVPDIA--CYGKLLTGGVIPLAATLAT 704 (818)
Q Consensus 676 e~~gv~PDiv--tlgKgLggGy~PlsAvl~~ 704 (818)
+..+|++ +++|.++|...++|+++++
T Consensus 194 ---~~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 194 ---AWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp ---GGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred ---ccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 2358988 7999999743688877774
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-15 Score=163.13 Aligned_cols=270 Identities=13% Similarity=0.121 Sum_probs=163.9
Q ss_pred HHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCc
Q 003466 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (818)
Q Consensus 421 V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~ 500 (818)
+.+++.+.+.... .+..+...+|.++|+++++. +.++|++||++|++.+++.+ + -..
T Consensus 21 ~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~~~~~-~---~~~----------- 77 (374)
T 3uwc_A 21 YLNDLREFIKTAD-----FTLGAELEKFEKRFAALHNA---PHAIGVGTGTDALAMSFKML-N---IGA----------- 77 (374)
T ss_dssp HHHHHHHHHHHTC-----CSSCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T---CCT-----------
T ss_pred HHHHHHHHHHcCC-----cccChhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C---CCC-----------
Confidence 5555555554432 12467789999999999974 58999999999999999876 1 011
Q ss_pred cccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc
Q 003466 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (818)
Q Consensus 501 ~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~ 580 (818)
..+|++...+||+... ++...|... ..++..+.+ -
T Consensus 78 -----gd~v~~~~~~~~~~~~-~~~~~g~~~----------------------------~~~~~~~~~-----------~ 112 (374)
T 3uwc_A 78 -----GDEVITCANTFIASVG-AIVQAGATP----------------------------VLVDSENGY-----------V 112 (374)
T ss_dssp -----TCEEEEESSSCHHHHH-HHHHTTCEE----------------------------EEECBCTTS-----------S
T ss_pred -----CCEEEECCCccHHHHH-HHHHcCCEE----------------------------EEEecCCCC-----------C
Confidence 2478888888887543 222222110 001110000 0
Q ss_pred cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEe
Q 003466 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (818)
Q Consensus 581 nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~D 660 (818)
-|+ +.+++.+. .++++|+ |. ...|...+ +++|.++|++||+++|+|
T Consensus 113 ~d~------------------~~l~~~~~--------~~~~~v~--~~--n~~G~~~~----~~~i~~~~~~~~~~li~D 158 (374)
T 3uwc_A 113 IDP------------------EKIEAAIT--------DKTKAIM--PV--HYTGNIAD----MPALAKIAKKHNLHIVED 158 (374)
T ss_dssp BCG------------------GGTGGGCC--------TTEEEEC--CB--CGGGCCCC----HHHHHHHHHHTTCEEEEE
T ss_pred cCH------------------HHHHHhCC--------CCceEEE--Ee--CCcCCcCC----HHHHHHHHHHcCCEEEEe
Confidence 011 23333332 2566666 53 44566554 999999999999999999
Q ss_pred ecccCcccCCccchhcccCCCCcEEEec----ccccC-Cccccceeecch-HHHhhcc---CC-----------------
Q 003466 661 EVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLATN-AVFDSFV---GD----------------- 714 (818)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLgg-Gy~PlsAvl~~~-~i~~~l~---~~----------------- 714 (818)
|+++.+ ..+..+.++..+|++++| |.+++ |. .|++++++ ++++.+. ..
T Consensus 159 ~~~~~g----~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (374)
T 3uwc_A 159 ACQTIL----GRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRM 232 (374)
T ss_dssp CTTCTT----CEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBC
T ss_pred CCCccC----ceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCC
Confidence 999632 224445566668999988 99988 73 67777654 4533221 10
Q ss_pred hH---------------------HHHHHHHHHHHcCCC-eeEE---E-eeeeEEEEEEecCcccCCCchHHHHHHHHHHH
Q 003466 715 SK---------------------LWDLELIQQISSHRT-VQRV---V-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR 768 (818)
Q Consensus 715 ~~---------------------~~~~~l~~~l~~~~~-v~~v---r-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~ 768 (818)
.. .+.+.+.+.+...+. +.-. . +...+..+.+... ....+.+.|.
T Consensus 233 ~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~ 303 (374)
T 3uwc_A 233 DTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK---------YRDQLFQYLK 303 (374)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET---------THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC---------CHHHHHHHHH
Confidence 00 000122333444432 2111 0 1111111111111 2456888999
Q ss_pred hCCceEeecC----------------------------CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 769 EDGVYMRPLG----------------------------NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 769 e~Gvlv~p~g----------------------------~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++||.+++.. +.+|+.+...+|++||++++++|.+++++
T Consensus 304 ~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 304 DNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp HTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999988643 68999999999999999999999998864
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-13 Score=159.40 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=121.4
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEEEe--cccccCCcc
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVI 696 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gKgLggGy~ 696 (818)
+.+|++... ++..|.+.+ +++|.++|++||+++++||+++|+...+. +.....|+ .+|++++ +|.++++ +
T Consensus 259 ~~~vv~~~~-~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~ 331 (497)
T 2qma_A 259 PFAIVGTAG-TTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQT-I 331 (497)
T ss_dssp EEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCC-S
T ss_pred ceEEEEcCC-CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCC-c
Confidence 456666654 566787665 99999999999999999999998876666 44445577 7899877 9999988 5
Q ss_pred ccceeecchH-HHhhccC-------C-------------------hH----------------------HHHHHHHHHHH
Q 003466 697 PLAATLATNA-VFDSFVG-------D-------------------SK----------------------LWDLELIQQIS 727 (818)
Q Consensus 697 PlsAvl~~~~-i~~~l~~-------~-------------------~~----------------------~~~~~l~~~l~ 727 (818)
++|+++++++ .++.+.. . .. .+.+.+.+.++
T Consensus 332 ~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~ 411 (497)
T 2qma_A 332 SCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIR 411 (497)
T ss_dssp SCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999888644 2333211 0 00 01112344555
Q ss_pred cCCCeeEE-EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee----cC-CEEEEEC-CCCChHHHHHHHHHH
Q 003466 728 SHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----LG-NVIYLMC-GPCSSPEVCSQLLLK 800 (818)
Q Consensus 728 ~~~~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~g-~~ir~~p-pl~~t~edId~~~~~ 800 (818)
+.+.+.-+ ...+.++.+.+.... . ........+.+.|.++|+++.+ .+ ..+|+++ +..+|++||++++++
T Consensus 412 ~~~~~~~~~~~~~~~v~f~~~~~~--~-~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~ 488 (497)
T 2qma_A 412 TNDQFELLAEPSLSTVLFRATHET--A-DLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSK 488 (497)
T ss_dssp TCTTEEECSCCSSSEEEEEECCSS--S-CHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred hCCCeEEEcCCCceEEEEEEcCCc--c-CHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHH
Confidence 55543221 223457777775431 0 1112355678889999998864 23 5799987 788999999999999
Q ss_pred HHHHHHHH
Q 003466 801 LYQRLEEF 808 (818)
Q Consensus 801 l~~~l~~l 808 (818)
|+++++++
T Consensus 489 l~~~~~~~ 496 (497)
T 2qma_A 489 INMLAVEL 496 (497)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99887654
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-15 Score=165.81 Aligned_cols=189 Identities=11% Similarity=0.050 Sum_probs=130.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH-HhcCCcEEEeecccC--cccCCc----cch
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTG--FWRLGV----ETT 674 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc-~~~gilLI~DEV~TG--fGRtG~----~~a 674 (818)
+.+++.+. ..++.+|++.|..++..|.+. |.+.+++|.++| ++||+++|+||++++ |+..+. .+.
T Consensus 170 ~~l~~~l~-------~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 241 (427)
T 3ppl_A 170 DAVEELVK-------NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVG 241 (427)
T ss_dssp HHHHHHTT-------STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHH
T ss_pred HHHHHHHh-------cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhh
Confidence 55666663 246789999987678888877 677799999999 999999999999987 444442 122
Q ss_pred h----cccCCCCcEEEecccccCCccccceeecchHHHhhccCChH----------------H------HH---------
Q 003466 675 A----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK----------------L------WD--------- 719 (818)
Q Consensus 675 ~----e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~----------------~------~~--------- 719 (818)
. ...+...++.++||.++.| +.+|.+++++++++.+..... . +.
T Consensus 242 ~~~~~~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 320 (427)
T 3ppl_A 242 LGEAAGNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAAS 320 (427)
T ss_dssp HHHHTTCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred hhhccCCCCcEEEEechhhccCcC-ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 1 1345556677999997778 799999999988776532110 0 00
Q ss_pred -----HHHHHHHHc----CCCeeE-EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-----------cC
Q 003466 720 -----LELIQQISS----HRTVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-----------LG 778 (818)
Q Consensus 720 -----~~l~~~l~~----~~~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-----------~g 778 (818)
+.+.+.+.+ .+.+.- ....|+++.+++... .+..+.+.|.++||++.| ..
T Consensus 321 ~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~ 391 (427)
T 3ppl_A 321 LAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG---------TASRVAELAKEAGIALTGAGSSYPLRQDPEN 391 (427)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTS
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc---------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCC
Confidence 011222221 112211 112467777776432 145678889999999987 23
Q ss_pred CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 779 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 779 ~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+.+|+.++.. ++++|++++++|.++++++.
T Consensus 392 ~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 392 KNLRLAPSLP-PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp CEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 7899998655 89999999999999998764
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=164.21 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=120.4
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh---cccCCCCcEEEecccccCC
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~---e~~gv~PDivtlgKgLggG 694 (818)
.++.+|++... ++..|.+. |.+.+++|.++|++||+++|+||++..+ ..+..+.. ...+...++.+++|.+..|
T Consensus 205 ~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G 281 (444)
T 3if2_A 205 GRIGAICCSRP-TNPTGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG 281 (444)
T ss_dssp TCEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG
T ss_pred CCceEEEeCCC-CCCCCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC
Confidence 35667777643 67788766 7888999999999999999999999532 22211110 1234445577999987778
Q ss_pred ccccceeecchHHHhhccCChH---------------------HH----HH-----------HHHHHHHc-CCCe-eEE-
Q 003466 695 VIPLAATLATNAVFDSFVGDSK---------------------LW----DL-----------ELIQQISS-HRTV-QRV- 735 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~---------------------~~----~~-----------~l~~~l~~-~~~v-~~v- 735 (818)
+++|++++++++++.+..... .+ .+ .+.+.+.+ .+.+ ..+
T Consensus 282 -~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 360 (444)
T 3if2_A 282 -MRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIH 360 (444)
T ss_dssp -GCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEE
T ss_pred -CceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEe
Confidence 799999999998876543211 00 00 11222322 3432 122
Q ss_pred -EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----C----------CEEEEECCCCChHHHHHHHHH
Q 003466 736 -VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----G----------NVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 736 -rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g----------~~ir~~ppl~~t~edId~~~~ 799 (818)
...|+++.+.+.... ..+..+++.|.++||++.++ + +.+|+.++. ++++|+++++
T Consensus 361 ~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~ 431 (444)
T 3if2_A 361 KPEGAIFLWLWFKDLP-------ISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIK 431 (444)
T ss_dssp CCCBSSEEEEEETTCS-------SCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHH
T ss_pred cCCccEEEEEEcCCCC-------CCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHH
Confidence 245777777775421 12556888899999999873 1 479999987 8999999999
Q ss_pred HHHHHHHHHH
Q 003466 800 KLYQRLEEFD 809 (818)
Q Consensus 800 ~l~~~l~~l~ 809 (818)
+|.++++++.
T Consensus 432 ~l~~~~~~~~ 441 (444)
T 3if2_A 432 VIGEVVRELY 441 (444)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=153.71 Aligned_cols=291 Identities=11% Similarity=0.010 Sum_probs=183.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
.|||..++ +.. +|+|.+|+.++++.........+ ..+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 28 ~~ld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 99 (406)
T 3cai_A 28 VHFDAPAG------MLI-PDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNAD-PGGVVLGADRAVLL 99 (406)
T ss_dssp EECBGGGC------CCC-CHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEEeCCCc------CCC-CHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCChHHHH
Confidence 67887652 256 89999999999986431110011 1355778999999988743 35899999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc---cCCCCCCCcCCCCcccCCCcccCCC
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPP 551 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~---tg~~~~~~~~~~p~~~~~~~~~~~p 551 (818)
+.+++...+.. .. ...||+...+||+.......+ .|...
T Consensus 100 ~~~~~~l~~~~--~~----------------gd~vi~~~~~~~~~~~~~~~~~~~~g~~v-------------------- 141 (406)
T 3cai_A 100 SLLAEASSSRA--GL----------------GYEVIVSRLDDEANIAPWLRAAHRYGAKV-------------------- 141 (406)
T ss_dssp HHHHHHTGGGG--BT----------------TCEEEEETTSCGGGTHHHHHHHHHHBCEE--------------------
T ss_pred HHHHHHHhhcc--CC----------------CCEEEEcCCccHHHHHHHHHHHHhcCCeE--------------------
Confidence 99888541111 11 237888888888743222221 12110
Q ss_pred cccccCcceeecCc-chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 552 TVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 552 ~~~~~~~~~~v~~P-~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
..++.. +.. ..|+ +.|++.+. .++++|+++++ +
T Consensus 142 --------~~v~~~~~~~-----------~~d~------------------~~l~~~l~--------~~~~~v~~~~~-~ 175 (406)
T 3cai_A 142 --------KWAEVDIETG-----------ELPT------------------WQWESLIS--------KSTRLVAVNSA-S 175 (406)
T ss_dssp --------EEECCCTTTC-----------CCCG------------------GGHHHHCC--------TTEEEEEEESB-C
T ss_pred --------EEEecCcccC-----------CcCH------------------HHHHHHhC--------CCceEEEEeCC-c
Confidence 011110 000 0111 34555553 36789999997 8
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccc-eeecchHH
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLA-ATLATNAV 707 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~Pls-Avl~~~~i 707 (818)
+..|.+.+ +++|.++|++||+++|+||+++ +|... +....++ +|+++ ++|.+|++ +| ++++++++
T Consensus 176 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~g~~---~G~~~~~~~~~ 243 (406)
T 3cai_A 176 GTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--ADVVTVNAHAWGGPP---IGAMVFRDPSV 243 (406)
T ss_dssp TTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CSEEEEEGGGGTSCS---CEEEEESCHHH
T ss_pred CCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CCEEEeehhhhcCCC---cCeEEEEehHH
Confidence 88898886 8999999999999999999995 43321 2233344 68775 57976532 88 88899988
Q ss_pred HhhccCC--------------h-H-------------HH------------------HHH-----------HHHHHHcCC
Q 003466 708 FDSFVGD--------------S-K-------------LW------------------DLE-----------LIQQISSHR 730 (818)
Q Consensus 708 ~~~l~~~--------------~-~-------------~~------------------~~~-----------l~~~l~~~~ 730 (818)
++.+... . . .+ .++ +.+.+++.+
T Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (406)
T 3cai_A 244 MNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLP 323 (406)
T ss_dssp HHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7655321 0 0 11 111 223344554
Q ss_pred CeeEEE---eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC--------------CEEEEECCCCChHHH
Q 003466 731 TVQRVV---ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------------NVIYLMCGPCSSPEV 793 (818)
Q Consensus 731 ~v~~vr---g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--------------~~ir~~ppl~~t~ed 793 (818)
.+.-+. ..+.++.+.+... .+..+.+.|.++||++++.. +.+|+.++..+|++|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~ 394 (406)
T 3cai_A 324 LVMLIGRPEAQIPVVSFAVHKV---------PADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAE 394 (406)
T ss_dssp TEEECCCCSSBCSEEEEEETTB---------CHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHH
T ss_pred CeEEcCCccccCCEEEEEECCc---------CHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHH
Confidence 432111 1244666666421 14568888999999998642 689999999999999
Q ss_pred HHHHHHHHHH
Q 003466 794 CSQLLLKLYQ 803 (818)
Q Consensus 794 Id~~~~~l~~ 803 (818)
+++++++|++
T Consensus 395 i~~~~~~l~~ 404 (406)
T 3cai_A 395 VDQLVRALAS 404 (406)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-14 Score=157.27 Aligned_cols=192 Identities=12% Similarity=0.029 Sum_probs=129.1
Q ss_pred cCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccc
Q 003466 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 412 ~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
.+.+. +++..+++..+. ..++. +..+.++...+|+++|+++.+. +.+++++||++|++.+++.+. +.|
T Consensus 31 ~~~~~-~~~~~~~~~~~~-~~~~~-y~~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~~~~-----~~g- 98 (389)
T 3acz_A 31 TFCFD-STQQGADLFMGK-GEGHI-YSRLGNPTVEQFEEMVCSIEGA---AGSAAFGSGMGAISSSTLAFL-----QKG- 98 (389)
T ss_dssp BBCCS-SHHHHHHHHTTC-SSCCC-BTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTTC-----CTT-
T ss_pred ceecC-ChHHHHHhhcCC-CCCcc-cCCCCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHh-----CCC-
Confidence 55666 665544443331 11221 2234578899999999999874 578889999999999998651 122
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCcccc---ccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a---ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~ 568 (818)
.+||+.+..||+..... +...|.. .+.+|
T Consensus 99 ---------------d~vl~~~~~y~~~~~~~~~~~~~~g~~------------------------------~~~v~--- 130 (389)
T 3acz_A 99 ---------------DHLIAGDTLYGCTVSLFTHWLPRFGIE------------------------------VDLID--- 130 (389)
T ss_dssp ---------------CEEEEESSCCHHHHHHHHHHHHHTTCE------------------------------EEEEC---
T ss_pred ---------------CEEEEeCCCchHHHHHHHHHHHHcCCE------------------------------EEEEC---
Confidence 37899999898743221 1111110 00011
Q ss_pred hhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHH
Q 003466 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (818)
Q Consensus 569 ~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~Lre 648 (818)
.+| .+.+++.+. .++++|++|++ ++..|.+.+ +++|.+
T Consensus 131 -----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~ 168 (389)
T 3acz_A 131 -----------TSD------------------VEKVKAAWK--------PNTKMVYLESP-ANPTCKVSD----IKGIAV 168 (389)
T ss_dssp -----------TTC------------------HHHHHHTCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHH
T ss_pred -----------CCC------------------HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHH
Confidence 112 145665553 36789999997 888898885 899999
Q ss_pred HHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCcccc-ceeecch-HHHhhc
Q 003466 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSF 711 (818)
Q Consensus 649 Lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~Pl-sAvl~~~-~i~~~l 711 (818)
+|++||+++|+||+++++ ..+.. .+..+|++ +++|.++|+..++ |++++++ ++++.+
T Consensus 169 ~~~~~~~~livD~~~~~~-~~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l 229 (389)
T 3acz_A 169 VCHERGARLVVDATFTSP-CFLKP-----LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATI 229 (389)
T ss_dssp HHHHHTCEEEEECTTTCT-TTCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHH
T ss_pred HHHHcCCEEEEECCCccc-cccCc-----cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHH
Confidence 999999999999999754 22222 23468988 6999999865787 8888988 887654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=9.7e-15 Score=161.89 Aligned_cols=295 Identities=11% Similarity=-0.004 Sum_probs=175.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhh-hcccccCC-C--CCChhHHHHH----HHHHhccCCCCCCcEEEeCChh
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAA-RFGHVMFP-E--NVYEPALECA----ELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~-~~~~~~~~-~--~~~~~~~eLa----e~L~~~~~~~~l~~v~f~~SGs 471 (818)
.++|+.+. ++- +|+|++|+.+++. .+.+.... . ...+...+++ ++|+++++.+ ...++++||+
T Consensus 25 ~~~~~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~--~~~i~~~sGt 95 (405)
T 2vi8_A 25 KIELIASE------NFV-SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE--HANVQPHSGA 95 (405)
T ss_dssp SEECCTTC------CCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHH
T ss_pred ceeeccCc------ccC-CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC--ceEEEecCcH
Confidence 56676542 233 8999999999986 44321100 0 1123444554 5888888742 2345578999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccc-c--ccccCCCCCCCcCCCCcccCCCccc
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG-A--MEAQAPSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~-a--ls~tg~~~~~~~~~~p~~~~~~~~~ 548 (818)
+|++.|++.+. ..| ..|++...+ |+.+.. . +...|.. .
T Consensus 96 ~a~~~a~~~~~-----~~g----------------d~Vl~~~~~-~~~~~~~~~~~~~~g~~-~---------------- 136 (405)
T 2vi8_A 96 QANMAVYFTVL-----EHG----------------DTVLGMNLS-HGGHLTHGSPVNFSGVQ-Y---------------- 136 (405)
T ss_dssp HHHHHHHHHHC-----CTT----------------CEEEEECGG-GTCCTTTTCTTSHHHHH-S----------------
T ss_pred HHHHHHHHHhc-----CCC----------------CEEEEeccc-ccchhcccchhhhccce-e----------------
Confidence 99999999871 112 367777654 554422 1 1121110 0
Q ss_pred CCCcccccCcceeecCc---chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 003466 549 DPPTVFMYNSKWILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P---~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv 625 (818)
..+.+| ..+ ..| .+.+++.+.+ .++++|++
T Consensus 137 -----------~~~~~~~~~~~~-----------~~d------------------~~~l~~~i~~-------~~~~~v~~ 169 (405)
T 2vi8_A 137 -----------NFVAYGVDPETH-----------VID------------------YDDVREKARL-------HRPKLIVA 169 (405)
T ss_dssp -----------EEEEECBCTTTC-----------SBC------------------HHHHHHHHHH-------HCCSEEEE
T ss_pred -----------EEEecccccccC-----------CcC------------------HHHHHHHHHh-------cCCeEEEE
Confidence 000111 000 112 2556666652 13467777
Q ss_pred ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEE--EecccccCCccccceee
Q 003466 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLTGGVIPLAATL 702 (818)
Q Consensus 626 EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv--tlgKgLggGy~PlsAvl 702 (818)
.|... |... .+++|+++|++||+++|+||+++ +|+++... ...++ .+|++ +++|+++|+. .|+++
T Consensus 170 ~~~~~---~~~~----~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~~~~~~di~~~s~sK~~~g~~--gG~~~ 237 (405)
T 2vi8_A 170 AAAAY---PRII----DFAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPNPVPYAHFVTTTTHKTLRGPR--GGMIL 237 (405)
T ss_dssp CCSSC---CSCC----CHHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCCSTTTCSEEEEESSSTTCCCS--CEEEE
T ss_pred eCCCC---CccC----CHHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCCccccCCEEEEeccccCCCCC--CeEEE
Confidence 55312 3222 38999999999999999999996 66654321 11222 58887 7999998652 38888
Q ss_pred cchHHHhhccC-------Ch--H-----------HH---------------HHHHHHHHHcCCCeeEE--EeeeeEEEEE
Q 003466 703 ATNAVFDSFVG-------DS--K-----------LW---------------DLELIQQISSHRTVQRV--VALGTLCAIE 745 (818)
Q Consensus 703 ~~~~i~~~l~~-------~~--~-----------~~---------------~~~l~~~l~~~~~v~~v--rg~Gl~~~ie 745 (818)
+++++++.+.. .. . .+ .+.+.+.|++.+ +.-+ .+.+.++.+.
T Consensus 238 ~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~ 316 (405)
T 2vi8_A 238 CQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEG-FTLVSGGTDNHLLLVD 316 (405)
T ss_dssp ECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEE
T ss_pred EcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-CeEecCCCCceEEEEE
Confidence 88888764421 11 0 00 011233444443 2111 2356777777
Q ss_pred EecCcccCCCchHHHHHHHHHHHhCCceEeec-----------CCEEEEECCC----CChHHHHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGP----CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----------g~~ir~~ppl----~~t~edId~~~~~l~~~l~~l~ 809 (818)
+.... .....+.+.|.++||+++++ ++.+|++++. .++++|+++++++|+++++++.
T Consensus 317 ~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 317 LRPQQ-------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp CGGGT-------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred ccCCC-------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 75321 11456778889999999873 3579999987 6889999999999999987764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=163.39 Aligned_cols=291 Identities=15% Similarity=0.049 Sum_probs=179.4
Q ss_pred cCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcE-EEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 412 ~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v-~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
++|.+ .+.+.+++.+++.+...........+...++.++|+++++.+ .+.+ ++++||++|++.+++.+ . ..
T Consensus 14 ~~~p~-p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~~~~~~s~t~al~~~~~~l---~--~~- 85 (416)
T 3isl_A 14 IMTPG-PVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTK-NRWAYPIDGTSRAGIEAVLASV---I--EP- 85 (416)
T ss_dssp ECSSS-SCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCC-CSEEEEEESCHHHHHHHHHHHH---C--CT-
T ss_pred eecCC-CcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCC-CCcEEEecCcHHHHHHHHHHHh---c--CC-
Confidence 35555 555555565555543211111112455788999999988754 2444 48899999999999866 1 12
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~ 569 (818)
..+||+.+.+||+.... .+...|... ..++.+...
T Consensus 86 ---------------gd~Vl~~~~~~~~~~~~~~~~~~g~~~----------------------------~~v~~~~~~- 121 (416)
T 3isl_A 86 ---------------EDDVLIPIYGRFGYLLTEIAERYGANV----------------------------HMLECEWGT- 121 (416)
T ss_dssp ---------------TCEEEEEESSHHHHHHHHHHHHTTCEE----------------------------EEEECCTTC-
T ss_pred ---------------CCEEEEecCCcccHHHHHHHHhcCCee----------------------------EEEecCCCC-
Confidence 24799999999984322 122222110 011111000
Q ss_pred hhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHH
Q 003466 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (818)
Q Consensus 570 ~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreL 649 (818)
..| .+.+++.+.+ +++++|+++.+ ++..|.+.+ +++|.++
T Consensus 122 ----------~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l 161 (416)
T 3isl_A 122 ----------VFD------------------PEDIIREIKK-------VKPKIVAMVHG-ETSTGRIHP----LKAIGEA 161 (416)
T ss_dssp ----------CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CHHHHHH
T ss_pred ----------CCC------------------HHHHHHHHhh-------CCCcEEEEEcc-CCCCceecC----HHHHHHH
Confidence 001 2566777752 24578999987 898998876 8999999
Q ss_pred HHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccCC-------------
Q 003466 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD------------- 714 (818)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~~------------- 714 (818)
|++||+++|+||+++ +|... +....+ .+|+++++ |.++|+ .++|++++++++++.+...
T Consensus 162 ~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~l~g~-~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~ 235 (416)
T 3isl_A 162 CRTEDALFIVDAVAT-IGGCE--VKVDEW--KIDAAIGGTQKCLSVP-SGMAPITYNERVADVIAARKKVERGIATQADR 235 (416)
T ss_dssp HHHTTCEEEEECTTT-TTTSC--CCTTTT--TCSEEECCSSSTTCCC-SSEEEEEECHHHHHHHHTC-------------
T ss_pred HHHcCCEEEEECCcc-ccCCC--cchhhc--CCCEEEecCccccCCC-CCeEEEEECHHHHHHhhccccccccccccccc
Confidence 999999999999995 43221 112222 36887655 998887 5789999999887554310
Q ss_pred -------------------------------hH-------------HHH---------------HHHHHHHHcCCC-e-e
Q 003466 715 -------------------------------SK-------------LWD---------------LELIQQISSHRT-V-Q 733 (818)
Q Consensus 715 -------------------------------~~-------------~~~---------------~~l~~~l~~~~~-v-~ 733 (818)
.. .+. +.+.+.+++.+. + .
T Consensus 236 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 315 (416)
T 3isl_A 236 AALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFG 315 (416)
T ss_dssp -----CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCS
T ss_pred hhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEecc
Confidence 00 000 112333443321 1 1
Q ss_pred E-EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEECCCCChHHH-HHHHHHHHHHHH
Q 003466 734 R-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGPCSSPEV-CSQLLLKLYQRL 805 (818)
Q Consensus 734 ~-vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~ppl~~t~ed-Id~~~~~l~~~l 805 (818)
. -...+.++.+.+... ..+..+.+.|.++ ||+++++ ++.+|+.++...+++| +++++++|++++
T Consensus 316 ~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 316 DDSCKMPVVTCVEIPGG--------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp CGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CccccCCcEEEEeCCCC--------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 0 011356676766422 1255788899887 9999862 4789999977666666 999999999998
Q ss_pred HHH
Q 003466 806 EEF 808 (818)
Q Consensus 806 ~~l 808 (818)
+++
T Consensus 388 ~~~ 390 (416)
T 3isl_A 388 LRH 390 (416)
T ss_dssp HHT
T ss_pred HHc
Confidence 876
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-14 Score=163.23 Aligned_cols=296 Identities=11% Similarity=0.006 Sum_probs=180.5
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccC---CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcc
Q 003466 413 PDATLQIELARDMGYTAARFGHVMF---PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (818)
Q Consensus 413 lGh~~hp~V~eAi~~q~~~~~~~~~---~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~ 489 (818)
.+|. +|++++++.++...+..... ..+..+...+++++|++++|.+ ..++++++|++|+..|++++ |.+...+
T Consensus 75 ~~~~-~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~~~~~~ggt~a~~~al~~~-~~~~~~~ 150 (474)
T 1wyu_B 75 TMKY-NPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMD--AITLEPAAGAHGELTGILII-RAYHEDR 150 (474)
T ss_dssp CCCC-CCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHH-HHHHHHT
T ss_pred cccC-CHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCC--ceeecChHHHHHHHHHHHHH-HHHHHhc
Confidence 4577 89999999887322211110 0111356788999999988742 23567899999999999998 5442222
Q ss_pred cccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhh
Q 003466 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (818)
Q Consensus 490 G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~ 569 (818)
|+ .++|.+||+.+ .+|+++..++...|... ..++....+
T Consensus 151 Gd-----------~~~r~~Vlv~~-~~h~~~~~~~~~~G~~v----------------------------v~v~~~~~~- 189 (474)
T 1wyu_B 151 GE-----------GRTRRVVLVPD-SAHGSNPATASMAGYQV----------------------------REIPSGPEG- 189 (474)
T ss_dssp TC-----------TTTCCEEEEET-TSCTHHHHHHHHTTCEE----------------------------EEECBCTTS-
T ss_pred CC-----------ccCCCEEEEeC-CcChhhHHHHHHCCCEE----------------------------EEecCCCCC-
Confidence 21 01244666655 78888877665544321 011110000
Q ss_pred hhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHH
Q 003466 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (818)
Q Consensus 570 ~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreL 649 (818)
.-| .+.|++.+. +++++|+++.. . ..|.+. ..+++|.++
T Consensus 190 ----------~~d------------------~~~L~~~i~--------~~t~~v~~~~p-n-~~G~~~---~~l~~i~~l 228 (474)
T 1wyu_B 190 ----------EVD------------------LEALKRELG--------PHVAALMLTNP-N-TLGLFE---RRILEISRL 228 (474)
T ss_dssp ----------SBC------------------HHHHHHHCS--------TTEEEEEECSS-C-TTSCCC---TTHHHHHHH
T ss_pred ----------CcC------------------HHHHHHhhC--------CCceEEEEECC-C-CCcccC---CCHHHHHHH
Confidence 001 256676664 35789999974 4 467652 249999999
Q ss_pred HHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCC----ccccceeecchHHHhhccC----------
Q 003466 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG----VIPLAATLATNAVFDSFVG---------- 713 (818)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggG----y~PlsAvl~~~~i~~~l~~---------- 713 (818)
|++||+++|+||++. .+.+|.. ....+| +|++++ +|.+++. -.++|++++++++++.+..
T Consensus 229 ~~~~g~~li~Dea~~-~~~~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~ 304 (474)
T 1wyu_B 229 CKEAGVQLYYDGANL-NAIMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGF 304 (474)
T ss_dssp HHHHTCEEEEEGGGG-GGTTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCE
T ss_pred HHHcCCEEEEeCchh-hhhccCC-CcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCee
Confidence 999999999999994 3334422 112234 899987 8988632 2589999999988776541
Q ss_pred -------------C----hH--------HHH------------------HHHHHHHHcCCCeeEEEeeeeE--EEEEEec
Q 003466 714 -------------D----SK--------LWD------------------LELIQQISSHRTVQRVVALGTL--CAIELQA 748 (818)
Q Consensus 714 -------------~----~~--------~~~------------------~~l~~~l~~~~~v~~vrg~Gl~--~~iel~~ 748 (818)
. .. .+. +.+.+.|++.+ +.-+.+.+.+ +.+.+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~ 383 (474)
T 1wyu_B 305 YLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKG-YRVPYDGPSMHEFVAQPPE 383 (474)
T ss_dssp EEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCSSCSSCCSCEEEBCST
T ss_pred EecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cEecCCCCcceEEEEEcCC
Confidence 0 00 110 11223344432 1111111111 2222310
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEee------cCCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRP------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p------~g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
. ..+..+++.|.++||++.. .++.+|+.++..+|++|+++++++|++++++
T Consensus 384 ~--------~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 384 G--------FRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp T--------CCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred C--------CCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 1 1256788999999998642 1478999999999999999999999988765
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-15 Score=164.06 Aligned_cols=301 Identities=11% Similarity=0.009 Sum_probs=160.8
Q ss_pred EEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC-----CCCCChhHHHHHHHHHhccCCCCCCc
Q 003466 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-----PENVYEPALECAELLLQGVGKGWASR 463 (818)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~-----~~~~~~~~~eLae~L~~~~~~~~l~~ 463 (818)
.++.++. -|||+.+. +.. +|++.+|+.+++++...... .....+...++.++|+++++.. .+.
T Consensus 15 ~~~~~~~----iyld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~ 82 (400)
T 3vax_A 15 VPRGSHM----TYLDAAAT------TRV-DQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE-PDE 82 (400)
T ss_dssp -----------CCCCCCCC------SSS-CHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC-GGG
T ss_pred CcccCCc----EEecCCCC------CCC-CHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC-CCc
Confidence 4445666 79998762 356 89999999999875421100 0012345678999999988743 358
Q ss_pred EEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccccccc---CCCCCCCcCCCCc
Q 003466 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ---APSPYTGFLQQPW 540 (818)
Q Consensus 464 v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~t---g~~~~~~~~~~p~ 540 (818)
++|+++|++|++.+++.+. .++...| ...||+.+..|++.. .++... |..
T Consensus 83 v~~~~g~t~al~~~~~~l~-~~~~~~g---------------d~~Vl~~~~~~~~~~-~~~~~~~~~g~~---------- 135 (400)
T 3vax_A 83 LIFTSGATESNNIALLGLA-PYGERTG---------------RRHIITSAIEHKAVL-EPLEHLAGRGFE---------- 135 (400)
T ss_dssp EEEESCHHHHHHHHHHTTH-HHHHHHT---------------CCEEEEETTSCHHHH-HHHHHHHTTTCE----------
T ss_pred EEEeCCHHHHHHHHHHHHH-HhhccCC---------------CCEEEECccccHhHH-HHHHHHHhcCCe----------
Confidence 9999999999999999873 2222211 115666666665432 222211 110
Q ss_pred ccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE
Q 003466 541 YSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI 620 (818)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~i 620 (818)
...++....+ ..| .+.+++.+. .++
T Consensus 136 ------------------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~ 160 (400)
T 3vax_A 136 ------------------VDFLTPGPSG-----------RIS------------------VEGVMERLR--------PDT 160 (400)
T ss_dssp ------------------EEEECCCTTC-----------CCC------------------HHHHHTTCC--------TTE
T ss_pred ------------------EEEEccCCCC-----------CcC------------------HHHHHHhcC--------CCc
Confidence 0011111000 011 145555553 367
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCcccc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPL 698 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~Pl 698 (818)
++|+++++ ++..|.+.+ +++|.++|++||+++|+||+++ +|... ....+. +|+++++ | +.|+ .++
T Consensus 161 ~~v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~K-~~g~-~g~ 227 (400)
T 3vax_A 161 LLVSLMHV-NNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGHK-IGAP-KGV 227 (400)
T ss_dssp EEEECCSB-CTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETGG-GTSC-SSC
T ss_pred eEEEEECC-CCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHHH-hCCC-Cce
Confidence 89999997 898998876 8999999999999999999995 43322 122234 8998766 9 4443 357
Q ss_pred ceee-cch--------HHHhhccC---------ChH-------------HHH--------------HHHHHHHHcCCCee
Q 003466 699 AATL-ATN--------AVFDSFVG---------DSK-------------LWD--------------LELIQQISSHRTVQ 733 (818)
Q Consensus 699 sAvl-~~~--------~i~~~l~~---------~~~-------------~~~--------------~~l~~~l~~~~~v~ 733 (818)
|+++ +++ .+...+.. ... .+. +.+.+.++ .+.+.
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~ 306 (400)
T 3vax_A 228 GALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSFQ 306 (400)
T ss_dssp EEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTCE
T ss_pred EEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCEE
Confidence 8887 766 11111110 000 000 11223333 33332
Q ss_pred EEE----eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEEC
Q 003466 734 RVV----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMC 785 (818)
Q Consensus 734 ~vr----g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~p 785 (818)
-+. ..+.++.+.+... .+..+.+.|. +||.++++ .+.+|+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~ 376 (400)
T 3vax_A 307 VNGDQDHVVPHILNLSFEDV---------DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSW 376 (400)
T ss_dssp ECSCTTSBCTTEEEEECTTC---------CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEE
T ss_pred EeCCcccCCCCEEEEEeCCC---------CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEc
Confidence 111 1234555555321 1456788888 89987652 38899999
Q ss_pred -CCCChHHHHHHHHHHHHHHHHH
Q 003466 786 -GPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 786 -pl~~t~edId~~~~~l~~~l~~ 807 (818)
+..+|++|+++++++|++++++
T Consensus 377 ~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 377 TPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEC--------------------
T ss_pred cCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988753
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-14 Score=152.59 Aligned_cols=277 Identities=14% Similarity=0.032 Sum_probs=177.1
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|++++|+.+++.. +. .....+...++.++|+++++.+ .+.++++++|++|++.+++.+. ..|
T Consensus 13 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~~~-----~~g------- 75 (352)
T 1iug_A 13 HPKALEALARPQLH--HR--TEAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNLF-----APG------- 75 (352)
T ss_dssp CHHHHHHHHSCCCC--TT--SHHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHHC-----CTT-------
T ss_pred CHHHHHHhccCCCC--cc--CHHHHHHHHHHHHHHHHHhCCC-CceEEEcCchHHHHHHHHHhcc-----CCC-------
Confidence 89999999988753 11 0012345678999999988743 2589999999999999999761 122
Q ss_pred CCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
.+|++.+.+||+.....+ ...|.. ...++.+..+
T Consensus 76 ---------d~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 110 (352)
T 1iug_A 76 ---------ERVLVPVYGKFSERFYEIALEAGLV----------------------------VERLDYPYGD-------- 110 (352)
T ss_dssp ---------CEEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred ---------CeEEEEeCCchhHHHHHHHHHcCCc----------------------------eEEEeCCCCC--------
Confidence 378999999998541111 111111 0011111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc--C
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--K 654 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~--g 654 (818)
..|+ + .|+ . .++++|+++.. ++..|.+.+ +++|.++|++| |
T Consensus 111 ---~~d~------------------~----~l~-----~--~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 153 (352)
T 1iug_A 111 ---TPRP------------------E----DVA-----K--EGYAGLLLVHS-ETSTGALAD----LPALARAFKEKNPE 153 (352)
T ss_dssp ---CCCT------------------T----TSC-----C--SSCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCTT
T ss_pred ---CCCH------------------H----HHh-----c--cCCcEEEEEEe-cCCcceecC----HHHHHHHHHhhCCC
Confidence 0111 1 111 1 34568888886 888898876 89999999999 9
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHHhhcc--------------------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFV-------------------- 712 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~-------------------- 712 (818)
+++|+||+++ +|... +....+ .+|+++ ++|.++|+ ..+|++++++++++.+.
T Consensus 154 ~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
T 1iug_A 154 GLVGADMVTS-LLVGE--VALEAM--GVDAAASGSQKGLMCP-PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGES 227 (352)
T ss_dssp CEEEEECTTT-BTTBC--CCSGGG--TCSEEEEESSSTTCCC-SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCC
T ss_pred CEEEEECCcc-ccCcc--eecccc--CeeEEEecCcccccCC-CceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCC
Confidence 9999999994 55432 222223 378775 46988875 35788999988764310
Q ss_pred CChH-------------HH--------------HHHHHHHHHcCCCeeEEE--eeeeEEEEEEecCcccCCCchHHHHHH
Q 003466 713 GDSK-------------LW--------------DLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASL 763 (818)
Q Consensus 713 ~~~~-------------~~--------------~~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a~~~ 763 (818)
.... .+ .+.+.+.+++.+ +.-+. ..+.++.+.+... ..+..+
T Consensus 228 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 298 (352)
T 1iug_A 228 AWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGG-LRPVPKRFSPAVAAFYLPEG--------VPYARV 298 (352)
T ss_dssp SSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTT-CEESCSSBCTTCEEEECCTT--------CCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CcccccccCCeEEEEEcCCC--------CCHHHH
Confidence 0100 00 011233444442 21111 1466777766421 124568
Q ss_pred HHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 764 LKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 764 ~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+.|.++||++.+. .+.+|+.++..+|++|+++++++|+++++++
T Consensus 299 ~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 299 KEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp HHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 88999999999874 3789999999889999999999999988765
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=160.23 Aligned_cols=277 Identities=12% Similarity=0.037 Sum_probs=164.1
Q ss_pred cCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccc
Q 003466 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 412 ~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
.+|++ +|.+.+++.+++.+...... ....+...++.++|+++++. +.++|++||++|++.|++.+ + -..
T Consensus 7 ~l~~~-~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~---~~~i~~~sgt~al~~~l~~l-~---~~~-- 75 (373)
T 3frk_A 7 SFKPM-HDEIEYEIKFKFEEIYKRNW-FILGDEDKKFEQEFADYCNV---NYCIGCGNGLDALHLILKGY-D---IGF-- 75 (373)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHTS---SEEEEESCHHHHHHHHHHHT-T---CCT--
T ss_pred CCCcc-cCCCCHHHHHHHHHHHHCCC-ccCCchHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-C---CCC--
Confidence 35556 66665555555443211111 13467889999999999973 68999999999999999976 1 011
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYS 570 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~ 570 (818)
..+||+...+||+.. .++...|.... .++.. +.+
T Consensus 76 --------------gd~Vi~~~~~~~~~~-~~~~~~g~~~~----------------------------~~~~~~~~~-- 110 (373)
T 3frk_A 76 --------------GDEVIVPSNTFIATA-LAVSYTGAKPI----------------------------FVEPDIRTY-- 110 (373)
T ss_dssp --------------TCEEEEETTSCTHHH-HHHHHHSCEEE----------------------------EECEETTTT--
T ss_pred --------------cCEEEECCCCcHHHH-HHHHHcCCEEE----------------------------EEecccccc--
Confidence 237888888888743 33333332210 00000 000
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
--|+ +.+++.+. .++++|++. ...|...+ +++|.++|
T Consensus 111 ---------~~d~------------------~~l~~~l~--------~~~~~v~~~----n~~G~~~~----l~~i~~l~ 147 (373)
T 3frk_A 111 ---------NIDP------------------SLIESAIT--------EKTKAIIAV----HLYGQPAD----MDEIKRIA 147 (373)
T ss_dssp ---------EECG------------------GGTGGGCC--------TTEEEEEEE----CCTTCCCC----HHHHHHHH
T ss_pred ---------CcCH------------------HHHHHhcC--------CCCeEEEEE----CCCcCccc----HHHHHHHH
Confidence 0011 23344442 367777733 34555544 89999999
Q ss_pred HhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec----ccccC-Cccccceeecc-hHHHhhcc---CC-------
Q 003466 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDSFV---GD------- 714 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLgg-Gy~PlsAvl~~-~~i~~~l~---~~------- 714 (818)
++||+++|+||+|+ +| ..+....++..+|++++| |++++ |. .|+++++ +++++.+. ..
T Consensus 148 ~~~~~~li~D~a~~-~g---~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~ 221 (373)
T 3frk_A 148 KKYNLKLIEDAAQA-HG---SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYH 221 (373)
T ss_dssp HHHTCEEEEECTTC-TT---CEETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTB
T ss_pred HHcCCEEEEECCcc-cC---CEECCEeccccccEEEEeCcCCCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCc
Confidence 99999999999995 32 223334566668999988 99988 73 6667765 44543221 10
Q ss_pred ----------hH------H-----H----------HHHHHHHHHcCCCeeEEE-----eee--eEEEEEEecCcccCCCc
Q 003466 715 ----------SK------L-----W----------DLELIQQISSHRTVQRVV-----ALG--TLCAIELQAAGCNAGYG 756 (818)
Q Consensus 715 ----------~~------~-----~----------~~~l~~~l~~~~~v~~vr-----g~G--l~~~iel~~~~~~~~~~ 756 (818)
.. . + .+.+.+.++..+ +. +. ... ..+.+...
T Consensus 222 ~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~--------- 290 (373)
T 3frk_A 222 HIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VI-IPVEADYAKHVWYTFVIRSE--------- 290 (373)
T ss_dssp CCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EE-CCCCCTTEECCCSSEEEEES---------
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eE-eccCCCCCceeeEEEEEEeC---------
Confidence 00 0 0 011222223332 11 10 011 11222211
Q ss_pred hHHHHHHHHHHHhCCceEeecC----------------------------CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 757 SLYAASLLKKLREDGVYMRPLG----------------------------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 757 ~~~a~~~~~~l~e~Gvlv~p~g----------------------------~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.+..+.+.|.++||.+++.- ..+|+.....+|++|||+++++|++...
T Consensus 291 --~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 291 --KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp --SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred --CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 25578899999999998421 5799988899999999999999987654
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=159.90 Aligned_cols=283 Identities=12% Similarity=0.066 Sum_probs=178.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCC-cEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~-~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
+|++.+|+.+++.. +. .........++.++|+++++.. .+ .++++++|++|++.+++.+. ..|
T Consensus 30 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~al~~~~~~~~-----~~g------ 93 (396)
T 2ch1_A 30 SKRVLTAMTNTVLS--NF--HAELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLL-----EEG------ 93 (396)
T ss_dssp CHHHHHHTTSCCCC--TT--CHHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHC-----CTT------
T ss_pred CHHHHHHhcccccc--CC--ChhHHHHHHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHhc-----CCC------
Confidence 78899888876542 11 0011234778999999988753 24 69999999999999999761 122
Q ss_pred CCCccccccceEEEEEcCCCCCCcc-ccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~-~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
.+|++.+.+||+... ......|.. ...++.+..+
T Consensus 94 ----------d~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------- 128 (396)
T 2ch1_A 94 ----------DRVLIAVNGIWAERAVEMSERYGAD----------------------------VRTIEGPPDR------- 128 (396)
T ss_dssp ----------CEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTS-------
T ss_pred ----------CeEEEEcCCcccHHHHHHHHHcCCc----------------------------eEEecCCCCC-------
Confidence 379999999998421 111222211 0111111100
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+.+ .++++|+++.. ++..|.+.+ +++|.++|++||+
T Consensus 129 ----~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~ 174 (396)
T 2ch1_A 129 ----PFS------------------LETLARAIEL-------HQPKCLFLTHG-DSSSGLLQP----LEGVGQICHQHDC 174 (396)
T ss_dssp ----CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTC
T ss_pred ----CCC------------------HHHHHHHHHh-------CCCCEEEEECC-CCCCceecC----HHHHHHHHHHcCC
Confidence 111 2556666652 14568888886 788888876 8999999999999
Q ss_pred cEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccC--------------------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG-------------------- 713 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~-------------------- 713 (818)
++|+||+++ +|... ...+. ..+|+++.+ |.++++ ..+|++++++++++.+..
T Consensus 175 ~li~Dea~~-~g~~~--~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (396)
T 2ch1_A 175 LLIVDAVAS-LCGVP--FYMDK--WEIDAVYTGAQKVLGAP-PGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWG 248 (396)
T ss_dssp EEEEECTTT-BTTBC--CCTTT--TTCCEEECCCC-CCCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTT
T ss_pred EEEEEcccc-ccCCc--cchhh--cCcCEEEEcCCccccCC-CCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhh
Confidence 999999995 65432 12222 247988866 999886 467888888887654311
Q ss_pred ---------C--hH-----------HH---------------HHHHHHHHHcCCC--eeEE--EeeeeEEEEEEecCccc
Q 003466 714 ---------D--SK-----------LW---------------DLELIQQISSHRT--VQRV--VALGTLCAIELQAAGCN 752 (818)
Q Consensus 714 ---------~--~~-----------~~---------------~~~l~~~l~~~~~--v~~v--rg~Gl~~~iel~~~~~~ 752 (818)
. .. .+ .+.+.+.+++++. +... ...+.++.+.+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--- 325 (396)
T 2ch1_A 249 CYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKG--- 325 (396)
T ss_dssp CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTT---
T ss_pred hhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCC---
Confidence 0 00 00 0112233333321 1110 01234566665321
Q ss_pred CCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEEC-CCCChHHHHHHHHHHHHHHHHHHH
Q 003466 753 AGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 753 ~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~p-pl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+.+.|+++ ||+++++ ++.+|+.+ +..++++|+++++++|+++++++.
T Consensus 326 -----~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 326 -----VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp -----CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred -----CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 1255788889875 9999873 47899999 677899999999999999988764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=151.54 Aligned_cols=275 Identities=14% Similarity=0.090 Sum_probs=178.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
.+++++|+.+++++..+ ...+...++.++|+++++. +.+++++||++|++.+++.+ + . ..
T Consensus 19 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~al~~~~~~~-~-~--~~-------- 78 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI-----TTGPKNQELEAAFCRLTGN---QYAVAVSSATAGMHIALMAL-G-I--GE-------- 78 (393)
T ss_dssp CHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T-C--CT--------
T ss_pred CHHHHHHHHHHHhcCCc-----CCChHHHHHHHHHHHHhCC---CcEEEecChHHHHHHHHHHc-C-C--CC--------
Confidence 68999999999876422 1356788999999999873 58999999999999999976 1 1 11
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~ 576 (818)
..+|++...+||+.. .++...|.... .++.. +.+
T Consensus 79 --------gd~Vl~~~~~~~~~~-~~~~~~g~~~~----------------------------~v~~~~~~~-------- 113 (393)
T 1mdo_A 79 --------GDEVITPSMTWVSTL-NMIVLLGANPV----------------------------MVDVDRDTL-------- 113 (393)
T ss_dssp --------TCEEEEESSSCHHHH-HHHHHTTCEEE----------------------------EECBCTTTC--------
T ss_pred --------CCEEEeCCCccHhHH-HHHHHCCCEEE----------------------------EEeccCCcC--------
Confidence 237888888888743 33333332100 01100 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+. .++++|++.+. . |...+ +++|.++|++||++
T Consensus 114 ---~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~---G~~~~----~~~i~~l~~~~~~~ 156 (393)
T 1mdo_A 114 ---MVT------------------PEHIEAAIT--------PQTKAIIPVHY-A---GAPAD----LDAIYALGERYGIP 156 (393)
T ss_dssp ---CBC------------------HHHHHHHCC--------TTEEEECCBCG-G---GCCCC----HHHHHHHHHHHTCC
T ss_pred ---CCC------------------HHHHHHhcC--------CCceEEEEeCC-C---CCcCC----HHHHHHHHHHcCCe
Confidence 111 255666664 25788888774 3 44433 89999999999999
Q ss_pred EEEeeccc-CcccCCccchhcccCCCCcEEEec----ccccCCccccceeecc-hHHHhhcc---C-C------------
Q 003466 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFV---G-D------------ 714 (818)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~-~~i~~~l~---~-~------------ 714 (818)
+|+||+++ |+...|+. ++. +|++++| |+++|| .+|+++++ +++++.+. . .
T Consensus 157 li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 228 (393)
T 1mdo_A 157 VIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGG 228 (393)
T ss_dssp BCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC--------
T ss_pred EEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHHHHHHhcCCcccchhhhccc
Confidence 99999997 44344432 233 8999888 999887 47778876 67655321 0 0
Q ss_pred ----------------hH---------------------HHHHHHHHHHHcCCCee-------EEEeeeeEEEEEEecCc
Q 003466 715 ----------------SK---------------------LWDLELIQQISSHRTVQ-------RVVALGTLCAIELQAAG 750 (818)
Q Consensus 715 ----------------~~---------------------~~~~~l~~~l~~~~~v~-------~vrg~Gl~~~iel~~~~ 750 (818)
.. .+.+.+.+.+.+.+ +. ..++.+.++.+.+....
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~ 307 (393)
T 1mdo_A 229 RAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEAR 307 (393)
T ss_dssp ---CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHH
T ss_pred ccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEecccc
Confidence 00 00112344555555 21 13345566777775310
Q ss_pred ccCCCchHHHHHHHHHHHhCCceEeec--------------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 751 CNAGYGSLYAASLLKKLREDGVYMRPL--------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 751 ~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
. ...+..+.+.|.++||.+++. ...+|+.+...+|++|+++++++|+++
T Consensus 308 ~-----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 382 (393)
T 1mdo_A 308 C-----GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQI 382 (393)
T ss_dssp H-----SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred c-----ccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 0 012557888999999988762 126999888889999999999999988
Q ss_pred HHHH
Q 003466 805 LEEF 808 (818)
Q Consensus 805 l~~l 808 (818)
++..
T Consensus 383 ~~~~ 386 (393)
T 1mdo_A 383 AGQG 386 (393)
T ss_dssp HC--
T ss_pred HhcC
Confidence 7553
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=158.62 Aligned_cols=274 Identities=14% Similarity=0.052 Sum_probs=166.2
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCC
Q 003466 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (818)
Q Consensus 419 p~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~ 498 (818)
+++.+++.+++....+ ....+...+|.+.|+++++. +.++|++||++|++.|++.+ + . ..
T Consensus 36 ~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~~---~~~i~~~~gt~al~~~l~~~-~-~--~~--------- 95 (391)
T 3dr4_A 36 GNERDYVLECMDTTWI----SSVGRFIVEFEKAFADYCGV---KHAIACNNGTTALHLALVAM-G-I--GP--------- 95 (391)
T ss_dssp SSHHHHHHHHHHHTCC----SSCSHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-T-C--CT---------
T ss_pred HHHHHHHHHHHHcCCc----cCCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C-C--CC---------
Confidence 4567777766654221 12467889999999999974 58999999999999999977 1 1 11
Q ss_pred CccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhhcccccc
Q 003466 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (818)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~~ 577 (818)
..+|++...+||+....+ ...|.... .++.. +.+
T Consensus 96 -------gd~vl~~~~~~~~~~~~~-~~~g~~~~----------------------------~~~~~~~~~--------- 130 (391)
T 3dr4_A 96 -------GDEVIVPSLTYIASANSV-TYCGATPV----------------------------LVDNDPRTF--------- 130 (391)
T ss_dssp -------TCEEEEESSSCTHHHHHH-HHTTCEEE----------------------------EECBCTTTC---------
T ss_pred -------cCEEEECCCchHHHHHHH-HHCCCEEE----------------------------EEecCcccc---------
Confidence 247899999998864332 22221100 01100 000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
..|+ +.+++.+. .++++|++.. ..|...+ +++|.++|++||+++
T Consensus 131 --~~d~------------------~~l~~~~~--------~~~~~v~~~n----~tG~~~~----~~~i~~l~~~~~~~l 174 (391)
T 3dr4_A 131 --NLDA------------------AKLEALIT--------PRTKAIMPVH----LYGQICD----MDPILEVARRHNLLV 174 (391)
T ss_dssp --SBCG------------------GGSGGGCC--------TTEEEECCBC----GGGCCCC----HHHHHHHHHHTTCEE
T ss_pred --CcCH------------------HHHHHhcC--------CCceEEEEEC----CCCChhh----HHHHHHHHHHcCCEE
Confidence 0011 22333332 3567777443 2355443 999999999999999
Q ss_pred EEeecccCcccCCccchhcccCCCCcEEEec----ccccCCccccceeecc-hHHHhhccC-------------------
Q 003466 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG------------------- 713 (818)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~-~~i~~~l~~------------------- 713 (818)
|+||+++ + |..+.....+..+|++++| |+|+||. .|+++++ +++++.+..
T Consensus 175 i~D~a~~-~---g~~~~~~~~~~~~di~~~S~s~~K~l~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 248 (391)
T 3dr4_A 175 IEDAAEA-V---GATYRGKKSGSLGDCATFSFFGNAIITTGE--GGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGF 248 (391)
T ss_dssp EEECTTC-T---TCEETTEETTSSSSEEEEECBTTSSSCCBS--CEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCC
T ss_pred EEECccc-c---cceECCeeecccCCEEEEECCCCCcCCcCC--eEEEEECCHHHHHHHHHHHhcCCCCCCccccccccc
Confidence 9999995 2 2222223445557999888 9998863 6777665 445433210
Q ss_pred -Ch--H---------------------HHHHHHHHHHHcCCC-eeEE------EeeeeEEEEEEecCcccCCCchHHHHH
Q 003466 714 -DS--K---------------------LWDLELIQQISSHRT-VQRV------VALGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 714 -~~--~---------------------~~~~~l~~~l~~~~~-v~~v------rg~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
.. . .+.+.+.+.+++.+. +... +..+.++.+.+.... ......
T Consensus 249 ~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~ 322 (391)
T 3dr4_A 249 NYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGL------STTRDQ 322 (391)
T ss_dssp BCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSC------SSCHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCcc------chhHHH
Confidence 00 0 001123334444321 1111 233445566664310 012557
Q ss_pred HHHHHHhCCceEeec-------------------------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPL-------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~-------------------------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+.|.++||.+++. ...+|+.+...+|++||++++++|++++
T Consensus 323 l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 323 VIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 889999999999864 2578998888999999999999997653
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=162.05 Aligned_cols=288 Identities=11% Similarity=0.007 Sum_probs=163.4
Q ss_pred CCCCHHHHHHHHHhhh-hcccccC----CCCC--ChhHHHHH-HHHHhccCCCCCCcEEE-eCChhHHHHHHHHHHHHHh
Q 003466 415 ATLQIELARDMGYTAA-RFGHVMF----PENV--YEPALECA-ELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~-~~~~~~~----~~~~--~~~~~eLa-e~L~~~~~~~~l~~v~f-~~SGseA~e~ALklA~r~~ 485 (818)
+. +|+|++|+.+++. .+.+... ..+. .+...+++ ++++++++. +.+.+ ++||++|++.|++.++
T Consensus 56 ~~-~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~---~~~~v~~~sGs~a~~~a~~~~~--- 128 (447)
T 3h7f_A 56 FV-PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA---EFANVQPHSGAQANAAVLHALM--- 128 (447)
T ss_dssp CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHC---
T ss_pred CC-CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC---CceEEEeCCHHHHHHHHHHHhc---
Confidence 45 8999999999985 4543211 0111 12335677 899998874 56666 9999999999999771
Q ss_pred hhcccccccccCCCccccccceEEEEEcCCCCCCcccc--ccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeec
Q 003466 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (818)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a--ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~ 563 (818)
+.| ..|++.+.+|++....+ +..++.. + ..++
T Consensus 129 --~~G----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~-~---------------------------~~~~ 162 (447)
T 3h7f_A 129 --SPG----------------ERLLGLDLANGGHLTHGMRLNFSGKL-Y---------------------------ENGF 162 (447)
T ss_dssp --CTT----------------CEEEEECGGGTCCGGGTCTTSHHHHS-S---------------------------EEEE
T ss_pred --CCC----------------CEEEecCcccccccchhhhhhhcCCe-e---------------------------EEEE
Confidence 222 37888888887632111 1121110 0 0001
Q ss_pred CcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHH
Q 003466 564 LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLF 642 (818)
Q Consensus 564 ~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~~p~~f 642 (818)
+|..- .+ .+.| .+.+++.+.. .+..+|++ .|. .+.++ +
T Consensus 163 ~~~~~-------~~-~~~d------------------~~~l~~~i~~-------~~~~~i~~~~~~-~~~~~-------~ 201 (447)
T 3h7f_A 163 YGVDP-------AT-HLID------------------MDAVRATALE-------FRPKVIIAGWSA-YPRVL-------D 201 (447)
T ss_dssp ECCCT-------TT-CSCC------------------HHHHHHHHHH-------HCCSEEEEECSS-CCSCC-------C
T ss_pred cCcCc-------cc-CCcC------------------HHHHHHHHHh-------cCCeEEEEcCCC-CCCcc-------C
Confidence 11000 00 0122 2556666642 12235666 565 43332 6
Q ss_pred HHHHHHHHHhcCCcEEEeecc-cCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccCC-----
Q 003466 643 QRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD----- 714 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~----- 714 (818)
+++|+++|++||++||+||+| +|+...|...... . ..|++ +++|+++| .+.|.+++++++++.+...
T Consensus 202 l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~-~~di~~~s~sK~l~G--~~gG~i~~~~~~~~~l~~~~~~~~ 276 (447)
T 3h7f_A 202 FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--P-HADVVSTTVHKTLGG--GRSGLIVGKQQYAKAINSAVFPGQ 276 (447)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--T-TCSEEEEESSGGGCC--CSCEEEEECGGGHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--C-CCcEEEecCCcCCCC--CCeEEEEECHHHHHHHhhhcCCcc
Confidence 999999999999999999997 4665555432211 1 24766 67999974 4667788888776644211
Q ss_pred --h-----H------H------H----H-------HHHHHHHHcC----CCeeEEE--eeeeEEEEEEecCcccCCCchH
Q 003466 715 --S-----K------L------W----D-------LELIQQISSH----RTVQRVV--ALGTLCAIELQAAGCNAGYGSL 758 (818)
Q Consensus 715 --~-----~------~------~----~-------~~l~~~l~~~----~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~ 758 (818)
. . . . . +.+.+.|.+. +.+..+. ..+.++.+++.... .
T Consensus 277 ~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~ 349 (447)
T 3h7f_A 277 QGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSP-------L 349 (447)
T ss_dssp CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSS-------C
T ss_pred cCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCC-------C
Confidence 0 0 0 0 0 1122233322 1111111 12334445553221 1
Q ss_pred HHHHHHHHHHhCCceEe----ec-------CCEEEEECCCC----ChHHHHHHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLREDGVYMR----PL-------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 759 ~a~~~~~~l~e~Gvlv~----p~-------g~~ir~~ppl~----~t~edId~~~~~l~~~l~~l 808 (818)
....+.+.|.++||++. |. .+.+|+.+|.. ++++|+++++++|++++++.
T Consensus 350 ~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 350 DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 13345566667799987 32 25688887775 67999999999999998764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-14 Score=158.65 Aligned_cols=189 Identities=8% Similarity=0.075 Sum_probs=129.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH-hcCCcEEEeeccc--CcccCCccc-hh--
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ-NRKIPVIFDEVFT--GFWRLGVET-TA-- 675 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~-~~gilLI~DEV~T--GfGRtG~~~-a~-- 675 (818)
+.+++.+. ..++++|++.|..++..|.+. +.+++++|.++|+ +||+++|+||++. +|+..|+.+ ..
T Consensus 168 ~~l~~~l~-------~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 239 (422)
T 3d6k_A 168 GVVRELVK-------DPQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIE 239 (422)
T ss_dssp HHHHHHHT-------STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHH
T ss_pred HHHHHHHh-------cCCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhh
Confidence 56677774 235778887776577788755 8999999999999 9999999999996 576655321 11
Q ss_pred -----cccCCCCcEEEecccccCCccccceeecchHHHhhccCChH----------------HH------HH--------
Q 003466 676 -----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK----------------LW------DL-------- 720 (818)
Q Consensus 676 -----e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~----------------~~------~~-------- 720 (818)
+..+...++.+|||.++.| +++|++++++++++.+..... .+ .+
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 318 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAAS 318 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred HhhccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 2345556677999987778 799999999998775532110 01 00
Q ss_pred ------HHHHHHHc----CCCeeEEEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----------C
Q 003466 721 ------ELIQQISS----HRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------G 778 (818)
Q Consensus 721 ------~l~~~l~~----~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----------g 778 (818)
.+.+.+.+ .+.+.-+.. .|.++.+++... ....+.+.|.++||++.|. .
T Consensus 319 ~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~ 389 (422)
T 3d6k_A 319 LAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG---------TASRVVELAKEAGIALTGAGSSFPLHNDPNN 389 (422)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTS
T ss_pred HHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC---------CHHHHHHHHHHCCeEEEcCccccCCCCCCCC
Confidence 11122221 222322222 466677777432 1345677889999999872 2
Q ss_pred CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 779 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 779 ~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+.+|++++. .+++++++++++|.++++++.
T Consensus 390 ~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 390 ENIRLAPSL-PPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp CEEEECCSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 679999887 899999999999999987663
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=159.03 Aligned_cols=308 Identities=9% Similarity=0.004 Sum_probs=175.7
Q ss_pred ceeecccccccccCCCC-CCHHHHHHHHH-hhhhcc--cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEE--eCChhH
Q 003466 400 QQFDACASWWTQGPDAT-LQIELARDMGY-TAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAYF--SDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~-~hp~V~eAi~~-q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f--~~SGse 472 (818)
.+||+.+|...+.-|+. ..|.|.+|+.+ +++... .+....+..+....+++.+....+.. ..+++++ +++|++
T Consensus 30 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~ 109 (412)
T 1yaa_A 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTG 109 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHh
Confidence 78999987764444532 16899999999 876311 11111223334445555543321100 0258999 999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
|++.+++++ +.+. .| .+|++...+||+....+. ..|...
T Consensus 110 a~~~~~~~~-~~~~--~g----------------d~Vl~~~p~~~~~~~~~~-~~g~~~--------------------- 148 (412)
T 1yaa_A 110 ALHISAKFF-SKFF--PD----------------KLVYLSKPTWANHMAIFE-NQGLKT--------------------- 148 (412)
T ss_dssp HHHHHHHHH-HHHC--TT----------------CCEEEEESCCTTHHHHHH-TTTCCE---------------------
T ss_pred HHHHHHHHH-HHhC--CC----------------CEEEEeCCCCccHHHHHH-HcCceE---------------------
Confidence 999998876 4332 22 368999999998543222 122110
Q ss_pred ccccCcceeecC--cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 553 VFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 553 ~~~~~~~~~v~~--P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
..++. +..+ -.| .+.+++.+.+ .+...+.+++... +
T Consensus 149 -------~~v~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~~~~~~p-~ 186 (412)
T 1yaa_A 149 -------ATYPYWANETK-----------SLD------------------LNGFLNAIQK-----APEGSIFVLHSCA-H 186 (412)
T ss_dssp -------EEEECEETTTT-----------EEC------------------HHHHHHHHHH-----SCTTCEEEEECSS-C
T ss_pred -------EEEeeecCCCC-----------ccC------------------HHHHHHHHHh-----CCCCCEEEEeCCC-C
Confidence 01111 0000 011 2556667753 1222344443443 6
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC---ccchh-cccCCCC----c--EEEecccccC-Cccccc
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTA-DLLGCVP----D--IACYGKLLTG-GVIPLA 699 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG---~~~a~-e~~gv~P----D--ivtlgKgLgg-Gy~Pls 699 (818)
+..|.+. +.+.+++|.++|++||+++|+||++++|+..| ..... ...+..+ + +.+++|.+|. | +++|
T Consensus 187 nPtG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lriG 264 (412)
T 1yaa_A 187 NPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ERVG 264 (412)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GCEE
T ss_pred CCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcC-Ccce
Confidence 7777655 78999999999999999999999999997655 22222 2111223 2 3488999997 8 7999
Q ss_pred eee--c-----chH----HHhhccC-------C-hH--------HH---------HH--------------HHHHHHHcC
Q 003466 700 ATL--A-----TNA----VFDSFVG-------D-SK--------LW---------DL--------------ELIQQISSH 729 (818)
Q Consensus 700 Avl--~-----~~~----i~~~l~~-------~-~~--------~~---------~~--------------~l~~~l~~~ 729 (818)
+++ + +++ +++.+.. . .. .+ .+ .+.+.++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (412)
T 1yaa_A 265 CFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL 344 (412)
T ss_dssp EEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988 7 565 6554322 0 01 11 11 122233333
Q ss_pred C---CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 730 R---TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 730 ~---~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+ .+.-+...|.++.+ +.-+ ...+...+.++||++.+ .+|+.++. ++++++++++++|+++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~l~~~gi~v~~---~~Ris~~~-~~~~~i~~~~~~l~~~~~ 409 (412)
T 1yaa_A 345 GTPGNWDHIVNQCGMFSF-TGLT----------PQMVKRLEETHAVYLVA---SGRASIAG-LNQGNVEYVAKAIDEVVR 409 (412)
T ss_dssp TCSSCCTHHHHCCSSEEE-CCCC----------HHHHHHHHHHHCEECCT---TSEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred CCCCCeeeeccCceEEEe-eCCC----------HHHHHHHHHhCCEEecc---CcEEEEcc-CCHhHHHHHHHHHHHHHH
Confidence 3 12111122222222 1101 22354445578999987 36888774 589999999999998876
Q ss_pred H
Q 003466 807 E 807 (818)
Q Consensus 807 ~ 807 (818)
.
T Consensus 410 ~ 410 (412)
T 1yaa_A 410 F 410 (412)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=154.19 Aligned_cols=285 Identities=11% Similarity=-0.034 Sum_probs=156.5
Q ss_pred CCCCHHHHHHHHHhh-hhcccccC---CCCCChhHHHH----HHHHHhccCCCCCCcE-EEeCChhHHHHHHHHHHHHHh
Q 003466 415 ATLQIELARDMGYTA-ARFGHVMF---PENVYEPALEC----AELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 415 h~~hp~V~eAi~~q~-~~~~~~~~---~~~~~~~~~eL----ae~L~~~~~~~~l~~v-~f~~SGseA~e~ALklA~r~~ 485 (818)
+. +|+|++|+.+++ +.+..... .....+...++ .+++++.++. +.. ++++||++|++.|++.+.
T Consensus 36 ~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~---~~~~i~~~sGt~a~~~~~~~~~--- 108 (417)
T 3n0l_A 36 FT-LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC---KFANVQPNSGSQANQGVYAALI--- 108 (417)
T ss_dssp CC-CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHS---
T ss_pred CC-CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC---CCcceEeccHHHHHHHHHHHhc---
Confidence 45 899999999998 44422110 00112333333 4477777764 333 566899999999999771
Q ss_pred hhcccccccccCCCccccccceEEEEEcCCCCCCccc--cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeec
Q 003466 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG--AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (818)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~--als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~ 563 (818)
..| .+|++.+.+||+.... .+...+.. ...++
T Consensus 109 --~~g----------------d~vl~~~~~~~~~~~~~~~~~~~g~~----------------------------~~~~~ 142 (417)
T 3n0l_A 109 --NPG----------------DKILGMDLSHGGHLTHGAKVSSSGKM----------------------------YESCF 142 (417)
T ss_dssp --CTT----------------CEEEEECC----------------CC----------------------------SEEEE
T ss_pred --CCC----------------CEEEecccccccccchhhhhhhhcce----------------------------eeeEe
Confidence 222 3788888888764321 11111100 00011
Q ss_pred CcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHH
Q 003466 564 LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQ 643 (818)
Q Consensus 564 ~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl 643 (818)
+|... + ...| .+.|++.+.+ .++++|++.+ ...|...+ +
T Consensus 143 ~~~~~--------~-~~~d------------------~~~l~~~i~~-------~~~~~v~~~~---~~~G~~~~----l 181 (417)
T 3n0l_A 143 YGVEL--------D-GRID------------------YEKVREIAKK-------EKPKLIVCGA---SAYARVID----F 181 (417)
T ss_dssp ECCCT--------T-SSCC------------------HHHHHHHHHH-------HCCSEEEECC---SSCCSCCC----H
T ss_pred ccCCC--------C-CCcC------------------HHHHHHHHHh-------cCCeEEEECC---cccCccCC----H
Confidence 11000 0 0012 2567777752 2345666544 22466664 9
Q ss_pred HHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCC--CCcEEEec--ccccCCccccceeecc-hHHHhhccC----
Q 003466 644 RILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGC--VPDIACYG--KLLTGGVIPLAATLAT-NAVFDSFVG---- 713 (818)
Q Consensus 644 ~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv--~PDivtlg--KgLggGy~PlsAvl~~-~~i~~~l~~---- 713 (818)
++|+++|++||+++|+||+|+ |+...|. ..+. ..|++++| |+++|+ ..|+++++ +++++.+..
T Consensus 182 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~~~di~~~s~sK~l~g~--~~G~~~~~~~~~~~~~~~~~~~ 254 (417)
T 3n0l_A 182 AKFREIADEIGAYLFADIAHIAGLVVAGE-----HPSPFPYAHVVSSTTHKTLRGP--RGGIIMTNDEELAKKINSAIFP 254 (417)
T ss_dssp HHHHHHHHHHTCEEEEECTTTHHHHHTTS-----SCCCTTTCSEEEEESSTTTCSC--SCEEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEECccchhhhhccc-----CCCccccceEEEeeCccccCCC--CeeEEEECCHHHHHHHhhhhCC
Confidence 999999999999999999974 3322222 1111 35888777 999664 47888887 677664421
Q ss_pred C---h--H-----------H-H--------------HHHHHHHHHcCCCeeEEE--eeeeEEEEEEecCcccCCCchHHH
Q 003466 714 D---S--K-----------L-W--------------DLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYA 760 (818)
Q Consensus 714 ~---~--~-----------~-~--------------~~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a 760 (818)
. . . . + .+.+.+.+.+.+ +.-+. ..+.++.+.+.... ...
T Consensus 255 ~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~-------~~~ 326 (417)
T 3n0l_A 255 GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRK-FKLVSDGTDNHLVLMSFLDRE-------FSG 326 (417)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECTTSS-------SCH
T ss_pred cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-ceeccCCCCceEEEEEcccCC-------CCH
Confidence 1 0 0 0 0 011223344422 21111 12334445543221 124
Q ss_pred HHHHHHHHhCCceEeec-----------CCEEEEECCCC----ChHHHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMRPL-----------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~p~-----------g~~ir~~ppl~----~t~edId~~~~~l~~~l~~l 808 (818)
..+.+.|.++||++++. .+.+|+.++.. ++++||++++++|.+++++.
T Consensus 327 ~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 327 KDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp HHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 56777888999999842 25688887643 67899999999999998764
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=150.02 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=169.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccC---CCCCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~---~~~l~~v~f~~SGseA~e~ 476 (818)
++||+.++.. .++ . +|++.+|+.+++.+.+...+ ......++.+.|+++++ .. .+.++++++|++|++.
T Consensus 20 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~y---~~~~~~~lr~~la~~~~~~~~~-~~~v~~~~G~~~al~~ 91 (335)
T 1uu1_A 20 DKTYLALNEN--PFP-F-PEDLVDEVFRRLNSDALRIY---YDSPDEELIEKILSYLDTDFLS-KNNVSVGNGADEIIYV 91 (335)
T ss_dssp CSEEESSCCC--SSC-C-CHHHHHHHHHTCCGGGGGSC---CCSSCHHHHHHHHHHHTCSSCC-GGGEEEESSHHHHHHH
T ss_pred cceECCCCCC--CCC-C-CHHHHHHHHHHhhhhhhhcC---CCCchHHHHHHHHHHcCCCCCC-HHHEEEcCChHHHHHH
Confidence 6889887643 344 5 89999999998843222111 11224667777777765 22 3689999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.+ |+ +|++. .+||+....+ ...|....
T Consensus 92 ~~~~~--------gd----------------~Vl~~-p~y~~~~~~~-~~~g~~~~------------------------ 121 (335)
T 1uu1_A 92 MMLMF--------DR----------------SVFFP-PTYSCYRIFA-KAVGAKFL------------------------ 121 (335)
T ss_dssp HHHHS--------SE----------------EEECS-SSCHHHHHHH-HHHTCEEE------------------------
T ss_pred HHHHh--------CC----------------cEEEC-CCcHHHHHHH-HHcCCeEE------------------------
Confidence 98854 22 67888 8999865322 22222100
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI-vEPV~~g~gG~ 635 (818)
.++....+ ..|+ +. . .++++|+ ..| ++..|.
T Consensus 122 ----~v~~~~~~-----------~~d~------------------~~-----------l--~~~~~v~l~~p--~nptG~ 153 (335)
T 1uu1_A 122 ----EVPLTKDL-----------RIPE------------------VN-----------V--GEGDVVFIPNP--NNPTGH 153 (335)
T ss_dssp ----ECCCCTTS-----------CCCC------------------CC-----------C--CTTEEEEEESS--CTTTCC
T ss_pred ----EeccCCCC-----------CCCH------------------HH-----------c--CCCCEEEEeCC--CCCCCC
Confidence 00000000 0011 00 1 1345555 666 677787
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcccCCCCcEEEeccccc-CCccccceeecchHHHhhccC
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~ 713 (818)
+. |.+.+++|.++| | ++|+||++++|+. +.... .+.++....+.+++|.+| .| +++|++++++++++.+..
T Consensus 154 ~~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~ 226 (335)
T 1uu1_A 154 VF-EREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAA-QRVGYVVASEKFIDAYNR 226 (335)
T ss_dssp CC-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHH
T ss_pred CC-CHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcc-cCeEEEEeCHHHHHHHHH
Confidence 66 555555555555 8 8999999998753 22121 222333345669999998 78 799999999998776532
Q ss_pred C------hH--------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHH
Q 003466 714 D------SK--------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASL 763 (818)
Q Consensus 714 ~------~~--------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~ 763 (818)
. .. .+ .+.+.+.+++++. .-....|.++.+.+.. ..+..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~---------~~~~~~ 296 (335)
T 1uu1_A 227 VRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGY-RITDSRGNFVFVFMEK---------EEKERL 296 (335)
T ss_dssp HSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTC-CBCCCCSSEEEEECCT---------HHHHHH
T ss_pred hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCc-EEcCCCCeEEEEECCC---------CCHHHH
Confidence 1 00 00 0122333443332 1123446666565532 235568
Q ss_pred HHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 764 LKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 764 ~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
++.|.++||++.+..+.+|+++. +++|+++++++|+++
T Consensus 297 ~~~l~~~gi~v~~~~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 297 LEHLRTKNVAVRSFREGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHTEEEEEETTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred HHHHHHCCEEEEECCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 88999999999997789999974 367899999888653
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=150.22 Aligned_cols=222 Identities=11% Similarity=0.002 Sum_probs=124.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
.|||..++ ++. +|++++|+.++++.........+ ..+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 20 ~~Ld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 91 (432)
T 3a9z_A 20 VYMDYNAT------TPL-EPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGK-PQDIIFTSGGTESN 91 (432)
T ss_dssp EECBTTTC------CCC-CHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEeeCCcc------CCC-CHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEeCChHHHH
Confidence 78887653 267 99999999999876321111111 1234578899999988743 35899999999999
Q ss_pred HHHHHHHHHHhhh---cccccccccCCCccccccceEEEEEcCCCCCCc-cccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 475 EIALKMAFRKFSF---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 475 e~ALklA~r~~t~---~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t-~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
+.+++.+.+.+.. ..| .+|++...+||+.. ......+.... .. +|.. .
T Consensus 92 ~~~~~~~~~~~~~~~~~~g----------------d~vl~~~p~y~~~~~i~~~~~~h~s~-~~----~~~~----~--- 143 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTLQG----------------RTVDQISPEEGTRPHFITCTVEHDSI-RL----PLEH----L--- 143 (432)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------------CCCEEEEETTCCHHH-HH----HHHH----H---
T ss_pred HHHHHHHHhhhhhccccCC----------------ccccccccccccCCeEEEecCcchhH-HH----HHHH----H---
Confidence 9999987433321 122 37889999998752 11111111000 00 0000 0
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
....+...+.+|.... +. ..| .+.|++.+. .++++|+++++ +
T Consensus 144 ---~~~~g~~v~~v~~~~~-------~~-~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~ 185 (432)
T 3a9z_A 144 ---VEDQVAEVTFVPVSKV-------NG-QVE------------------VEDILAAVR--------PTTCLVTIMLA-N 185 (432)
T ss_dssp ---HHTTSCEEEEECCCTT-------TS-SCC------------------HHHHHHTCC--------TTEEEEECCSB-C
T ss_pred ---HHhcCcEEEEEecCcc-------cC-CcC------------------HHHHHHhcc--------CCceEEEEECc-c
Confidence 0000001111110000 00 011 245555553 35789999997 8
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcC----------CcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCCcccc
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRK----------IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPL 698 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~g----------ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~Pl 698 (818)
+..|.+.+ +++|.++|++|| +++|+||++ ++|+... ... ...+|++++ +|.+ | ..+
T Consensus 186 nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~~--~~~--~~~~d~~~~s~~K~~--g-~~~ 253 (432)
T 3a9z_A 186 NETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRRV--DVE--DLGVDFLTIVGHKFY--G-PRI 253 (432)
T ss_dssp TTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSCC--CHH--HHCCSEEEEEGGGTT--C-CSC
T ss_pred cCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchh-hhCCccc--Chh--hcCCCEEEEehhHhc--C-Ccc
Confidence 88898886 789999999999 999999999 6665421 111 234788765 9976 3 348
Q ss_pred ceeecchHH
Q 003466 699 AATLATNAV 707 (818)
Q Consensus 699 sAvl~~~~i 707 (818)
|++++++++
T Consensus 254 G~~~~~~~~ 262 (432)
T 3a9z_A 254 GALYVRGVG 262 (432)
T ss_dssp EEEEETTBT
T ss_pred eEEEEcccc
Confidence 889888765
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=147.60 Aligned_cols=244 Identities=14% Similarity=0.072 Sum_probs=156.7
Q ss_pred HHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc
Q 003466 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (818)
Q Consensus 447 eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~ 526 (818)
+|+++|+++++. +.+++++||++|++.+++.+. +.| .+|++.+.+||+.......+
T Consensus 2 ~l~~~la~~~g~---~~~i~~~sG~~a~~~~~~~~~-----~~g----------------~~v~~~~~~~~~~~~~~~~~ 57 (331)
T 1pff_A 2 ALEGKIAKLEHA---EACAATASGMGAIAASVWTFL-----KAG----------------DHLISDDCLYGCTHALFEHQ 57 (331)
T ss_dssp HHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESCCCHHHHHHHHTH
T ss_pred hHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcchHHHHHHHH
Confidence 577888888874 478888999999999999651 122 36889999888743222111
Q ss_pred ---cCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHH
Q 003466 527 ---QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSY 603 (818)
Q Consensus 527 ---tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~ 603 (818)
.|.. .+.+| ..|. +.
T Consensus 58 ~~~~g~~------------------------------~~~~~--------------~~d~------------------~~ 75 (331)
T 1pff_A 58 LRKFGVE------------------------------VDFID--------------MAVP------------------GN 75 (331)
T ss_dssp HHHTTCE------------------------------EEEEC--------------TTST------------------TH
T ss_pred HHhcCCE------------------------------EEEeC--------------CCCH------------------HH
Confidence 1110 00001 1121 34
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh-cCCcEEEeecccCcccCCccchhcccCCCC
Q 003466 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTADLLGCVP 682 (818)
Q Consensus 604 Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~-~gilLI~DEV~TGfGRtG~~~a~e~~gv~P 682 (818)
+++.+. +++++|+++++ ++..|.+.+ +++|.++|++ ||+++|+||+|+ .|..... ..++...
T Consensus 76 l~~~i~--------~~~~~v~~~~~-~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~-~~~~~~~---~~~~~d~ 138 (331)
T 1pff_A 76 IEKHLK--------PNTRIVYFETP-ANPTLKVID----IEDAVKQARKQKDILVIVDNTFA-SPILTNP---LDLGVDI 138 (331)
T ss_dssp HHHTCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTT-HHHHCCG---GGGTCSE
T ss_pred HHHhhc--------CCCeEEEEECC-CCCcCcccC----HHHHHHHHhhhcCCEEEEECCCc-ccccCCh---hhcCCcE
Confidence 555443 36789999997 888898885 9999999999 999999999996 2222211 1344333
Q ss_pred cEEEecccccCCccc-cceeecch-HHHhhccC---C--hH--------H-------HH----------HHHHHHHHcCC
Q 003466 683 DIACYGKLLTGGVIP-LAATLATN-AVFDSFVG---D--SK--------L-------WD----------LELIQQISSHR 730 (818)
Q Consensus 683 DivtlgKgLggGy~P-lsAvl~~~-~i~~~l~~---~--~~--------~-------~~----------~~l~~~l~~~~ 730 (818)
.+.+++|.++++..+ .|++++++ ++++.+.. . .. . +. +.+.+.+++++
T Consensus 139 ~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (331)
T 1pff_A 139 VVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHK 218 (331)
T ss_dssp EEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334699999874467 67888988 87665421 1 11 0 00 01112233222
Q ss_pred CeeE------------------EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---------------
Q 003466 731 TVQR------------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------- 777 (818)
Q Consensus 731 ~v~~------------------vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------------- 777 (818)
.+.. .++.|.++.+.+. + ...+.+.|.++||++++.
T Consensus 219 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~ 287 (331)
T 1pff_A 219 AVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G----------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASM 287 (331)
T ss_dssp TCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S----------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHH
T ss_pred CeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C----------HHHHHHHHHhCCCceeccCCCCcceeeecchhh
Confidence 1111 1356788888875 2 234667788999977532
Q ss_pred ----------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 778 ----------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 778 ----------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.+.+|++++..+|+++|+.++++|+++
T Consensus 288 ~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 288 THAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp TSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred cccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 378999999999999999999988754
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-13 Score=147.57 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=170.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|++.+|+.++++.... ...+...++.++|+++++. +.++|++||++|++.+++.+ +.+. ..
T Consensus 12 ~~~v~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~~-~~~~-~~-------- 73 (375)
T 2fnu_A 12 DKEDKKAVLEVLNSKQL-----TQGKRSLLFEEALCEFLGV---KHALVFNSATSALLTLYRNF-SEFS-AD-------- 73 (375)
T ss_dssp CHHHHHHHHHHHTSSCC-----SSSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHS-SCCC-TT--------
T ss_pred CHHHHHHHHHHHHcCcc-----cCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHh-cccC-CC--------
Confidence 89999999999876321 1256778999999999973 58999999999999999976 2101 11
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (818)
..+|++.+.+||+.... +...|.... .++.....
T Consensus 74 --------gd~Vl~~~~~~~~~~~~-~~~~g~~~~----------------------------~~~~~~~~--------- 107 (375)
T 2fnu_A 74 --------RNEIITTPISFVATANM-LLESGYTPV----------------------------FAGIKNDG--------- 107 (375)
T ss_dssp --------SCEEEECSSSCTHHHHH-HHHTTCEEE----------------------------ECCBCTTS---------
T ss_pred --------CCEEEECCCccHhHHHH-HHHCCCEEE----------------------------EeccCCCC---------
Confidence 13788888888875433 222221100 00000000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
..|+ +.+++.+. .++++|++... .|.+.+ +++|.++|++||+++
T Consensus 108 --~~d~------------------~~l~~~i~--------~~~~~v~~~~~----tG~~~~----l~~i~~l~~~~~~~l 151 (375)
T 2fnu_A 108 --NIDE------------------LALEKLIN--------ERTKAIVSVDY----AGKSVE----VESVQKLCKKHSLSF 151 (375)
T ss_dssp --SBCG------------------GGSGGGCC--------TTEEEEEEECG----GGCCCC----HHHHHHHHHHHTCEE
T ss_pred --CCCH------------------HHHHhhcC--------cCceEEEEeCC----cCCccC----HHHHHHHHHHcCCEE
Confidence 0111 23333332 25666665543 466654 899999999999999
Q ss_pred EEeecccCcccCCccchhcccCCCCcEE--Eec--ccccCCccccceeecc--hHHHhhccC----C-------------
Q 003466 658 IFDEVFTGFWRLGVETTADLLGCVPDIA--CYG--KLLTGGVIPLAATLAT--NAVFDSFVG----D------------- 714 (818)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlg--KgLggGy~PlsAvl~~--~~i~~~l~~----~------------- 714 (818)
|+||+|+ +|... ....++..+|++ +++ |.++.| +|+++++ +++++.+.. .
T Consensus 152 i~D~a~~-~~~~~---~~~~~~~~~~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2fnu_A 152 LSDSSHA-LGSEY---QNKKVGGFALASVFSFHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKS 224 (375)
T ss_dssp EEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESS
T ss_pred EEECccc-cCCeE---CCeeccccCCeEEEeCCCCCCcccc---CceEEEeCCHHHHHHHHHHHhcCCcccccccccccc
Confidence 9999995 43322 112334334655 677 999665 5777763 666543210 0
Q ss_pred -------hH---------------------HHHHHHHHHHHcCCCeeEE------EeeeeEEEEEEecCcccCCCchH-H
Q 003466 715 -------SK---------------------LWDLELIQQISSHRTVQRV------VALGTLCAIELQAAGCNAGYGSL-Y 759 (818)
Q Consensus 715 -------~~---------------------~~~~~l~~~l~~~~~v~~v------rg~Gl~~~iel~~~~~~~~~~~~-~ 759 (818)
.. ...+.+.+.+++++.+.-. ++.+.++.+.+.... . .
T Consensus 225 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 297 (375)
T 2fnu_A 225 IGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF-------FTC 297 (375)
T ss_dssp CCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG-------GGG
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc-------cch
Confidence 00 0011234445555433211 122344455554210 1 2
Q ss_pred HHHHHHHHHhCCceEee----c----------------------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRP----L----------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p----~----------------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+..+.+.|.++||.++. . .+.+|+.++..+|++|+++++++|+++++++
T Consensus 298 ~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 298 KKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 56788899999999882 1 1579999998899999999999999988765
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=146.83 Aligned_cols=283 Identities=13% Similarity=0.088 Sum_probs=175.9
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
.+++.+|+.++++...+ . ...+...+|.++|+++++. +.++++++|++|++.+++.+ . .|
T Consensus 31 p~~~~~a~~~~~~~~~y-~---~~~~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~l~~l-~-----~g------- 90 (424)
T 2po3_A 31 RARLYERLDRALDSQWL-S---NGGPLVREFEERVAGLAGV---RHAVATCNATAGLQLLAHAA-G-----LT------- 90 (424)
T ss_dssp HHHHHHHHHHHHHHTCC-S---SSCHHHHHHHHHHHHHHTS---SEEEEESCHHHHHHHHHHHH-T-----CC-------
T ss_pred hHHHHHHHHHHHhcCCc-c---cCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-C-----CC-------
Confidence 46899999988865211 1 1246788999999999873 68999999999999999976 2 12
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~ 576 (818)
.+|++.+.+||+... ++...|.... .++.. +.+
T Consensus 91 ---------d~Vlv~~~~~~~~~~-~~~~~G~~~~----------------------------~v~~~~~~~-------- 124 (424)
T 2po3_A 91 ---------GEVIMPSMTFAATPH-ALRWIGLTPV----------------------------FADIDPDTG-------- 124 (424)
T ss_dssp ---------SEEEEESSSCTHHHH-HHHHTTCEEE----------------------------EECBCTTTS--------
T ss_pred ---------CEEEECCCccHHHHH-HHHHcCCEEE----------------------------EEecCCCcC--------
Confidence 379999999988553 3333322100 00000 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+. .++++|++.+. .|.. ..+++|.++|++||++
T Consensus 125 ---~~d------------------~~~l~~~i~--------~~~~~v~~~~~----tG~~----~~l~~i~~la~~~~~~ 167 (424)
T 2po3_A 125 ---NLD------------------PDQVAAAVT--------PRTSAVVGVHL----WGRP----CAADQLRKVADEHGLR 167 (424)
T ss_dssp ---SBC------------------HHHHGGGCC--------TTEEEEEEECG----GGCC----CCHHHHHHHHHHTTCE
T ss_pred ---CcC------------------HHHHHHhhC--------cCCcEEEEECC----CCCc----CCHHHHHHHHHHcCCE
Confidence 001 144554443 25667775432 2433 3499999999999999
Q ss_pred EEEeeccc-CcccCCccchhcccCCCCcEEEec----ccccCCccccceeecc-hHHHhhcc---CC-------------
Q 003466 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFV---GD------------- 714 (818)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~-~~i~~~l~---~~------------- 714 (818)
+|+||+++ |+...|.. .+..+|++++| |+|+|| .+|+++++ +++++.+. ..
T Consensus 168 li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~~--~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~ 240 (424)
T 2po3_A 168 LYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNAF--EGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGT 240 (424)
T ss_dssp EEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCC
T ss_pred EEEECccccCCeECCee-----cccccCEEEEeCCCCCCccCC--CCeEEEeCCHHHHHHHHHHHhcCccccccccccCc
Confidence 99999998 78665542 22236888777 999884 78888888 77765432 10
Q ss_pred ----hH------H-----HH----------HHHHHHHHcCCCeeEEE---e-e--eeEEEEEEecCcccCCCchHHHHHH
Q 003466 715 ----SK------L-----WD----------LELIQQISSHRTVQRVV---A-L--GTLCAIELQAAGCNAGYGSLYAASL 763 (818)
Q Consensus 715 ----~~------~-----~~----------~~l~~~l~~~~~v~~vr---g-~--Gl~~~iel~~~~~~~~~~~~~a~~~ 763 (818)
.. + +. +.+.+.+.+.+.+.-+. + . ..++.+.+..... . .....+
T Consensus 241 ~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~--~---~~~~~l 315 (424)
T 2po3_A 241 NAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATT--G---IHRDLV 315 (424)
T ss_dssp BCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHH--S---SCHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccc--h---hhHHHH
Confidence 00 0 00 11223333343332221 1 1 1455566542000 0 114567
Q ss_pred HHHHHhCCceEeec-C-C------------------------EEEEECCCCChHHHHHHHHHHHHHHHHHHHHhHHHh
Q 003466 764 LKKLREDGVYMRPL-G-N------------------------VIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKL 815 (818)
Q Consensus 764 ~~~l~e~Gvlv~p~-g-~------------------------~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~~~~ 815 (818)
.+.|.++||++++. + . .+++.....+|++|+++++++|.+++++..+..+.+
T Consensus 316 ~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~~~~~~ 393 (424)
T 2po3_A 316 MEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGRELTARH 393 (424)
T ss_dssp HHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHHHhhhh
Confidence 88899999999762 1 1 166655688999999999999999998876654443
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=140.59 Aligned_cols=282 Identities=11% Similarity=0.100 Sum_probs=179.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
++||+.++. +.+| - +|.+.+|+.++++.+.. +..+...+|.++|+++++.. .+.++|++++++|+..+++
T Consensus 17 ~~i~l~~n~--~~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 17 QAVCLAFNE--NPEA-V-EPRVQAAIAAAAARINR-----YPFDAEPRVMRKLAEHFSCP-EDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCEECSSCC--CCSC-C-CHHHHHHHHHHGGGTTS-----CCTTHHHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred CceEeeCCC--CCCC-C-CHHHHHHHHHhhhhhcc-----CCCCchHHHHHHHHHHhCcC-HHHEEEeCCHHHHHHHHHH
Confidence 789998753 4666 4 79999999998876432 23456788889999988643 3589999999999998888
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.. .| ..|++.+.+|++.... +...|...
T Consensus 87 ~~-------~g----------------d~vl~~~p~~~~~~~~-~~~~g~~~---------------------------- 114 (337)
T 3p1t_A 87 EF-------SS----------------MRFVTAWPGFDGYRAR-IAVSGLRH---------------------------- 114 (337)
T ss_dssp HS-------TT----------------SEEEEESSSCSHHHHH-HTTSCCEE----------------------------
T ss_pred hc-------CC----------------CeEEEeCCCcHHHHHH-HHHcCCEE----------------------------
Confidence 54 22 2688888888874322 22222110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..++..+.+ ..| .+.+++. .+..++++... ++..|.+.+
T Consensus 115 ~~v~~~~~~-----------~~d------------------~~~l~~~----------~~~~~v~i~~p-~nptG~~~~- 153 (337)
T 3p1t_A 115 FEIGLTDDL-----------LLD------------------PNDLAQV----------SRDDCVVLANP-SNPTGQALS- 153 (337)
T ss_dssp EEECBCTTS-----------SBC------------------HHHHTTC----------CTTEEEEEESS-CTTTCCCCC-
T ss_pred EEecCCCCC-----------CCC------------------HHHHHhh----------cCCCEEEEeCC-CCCCCCCCC-
Confidence 011111000 011 1223211 23356666654 788888886
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc-CCccccceeecchHHHhhccCChH--
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSK-- 716 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~~-- 716 (818)
.+++.++|+++++ +|+||++.+|+..+.... ...+..-.+.+++|.+| .| +.+|.+++++++++.+.....
T Consensus 154 ---~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~-~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~ 227 (337)
T 3p1t_A 154 ---AGELDQLRQRAGK-LLIDETYVDYSSFRARGL-AYGENELVFRSFSKSYGLAG-LRLGALFGPSELIAAMKRKQWFC 227 (337)
T ss_dssp ---HHHHHHHHHHCSE-EEEECTTGGGSSCSSSCC-CCBTTEEEEEESSSTTCCTT-TCCEEEECCHHHHHHHHTTSCTT
T ss_pred ---HHHHHHHHHhCCc-EEEECCChhhcccccccc-ccCCCEEEEeeCchhccCcc-hheEEEEeCHHHHHHHHhhcCCC
Confidence 6788999999997 666999998865553211 11121122448999998 77 689999999998876643211
Q ss_pred ------------------HH----------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHH
Q 003466 717 ------------------LW----------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR 768 (818)
Q Consensus 717 ------------------~~----------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~ 768 (818)
.+ .+.+.+.+++++ +.-....|.++.+...+ ...+.+.|.
T Consensus 228 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~-----------~~~~~~~l~ 295 (337)
T 3p1t_A 228 NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLG-YRVASSEANFVLVENAA-----------GERTLRFLR 295 (337)
T ss_dssp CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCSSSEEEEECTT-----------THHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCc-CEECCCCCeEEEEEcCC-----------HHHHHHHHH
Confidence 01 112334455543 22233456666554432 134667888
Q ss_pred hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 769 EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 769 e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
++||++.++ .+.+|++.. +++|+++++++|++.+
T Consensus 296 ~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 296 ERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp HTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 999999984 378999875 6899999999988764
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.1e-14 Score=161.67 Aligned_cols=225 Identities=12% Similarity=0.016 Sum_probs=138.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCC--C--CCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK--G--WASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~--~--~l~~v~f~~SGseA~e 475 (818)
+|++.+-.++....++. +|++++++.+++....+.....+..+...++++.+.+..+. . ..+.++++++|++|+.
T Consensus 100 ~~~~~~i~l~~g~~~~~-~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~ 178 (533)
T 3f6t_A 100 KFLIDAVNYCHTELGLN-RDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIV 178 (533)
T ss_dssp HHHHHHHHHHHHTTCCC-HHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHH
T ss_pred cccHhheeccCCCCCcC-CcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHH
Confidence 44444444445677888 99999999998876544322334566777888888554221 0 0158999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.......-..| ..|++.+.+|++.... +...|...
T Consensus 179 ~~~~~l~~~~l~~~g----------------d~Viv~~p~~~~~~~~-~~~~g~~~------------------------ 217 (533)
T 3f6t_A 179 YAFHSLAENHLLKKG----------------DKIAINEPIFTPYLRI-PELKDYEL------------------------ 217 (533)
T ss_dssp HHHHHHHHTTSSCTT----------------CEEEEESSCCHHHHTS-GGGGGSEE------------------------
T ss_pred HHHHHhhhhhccCCc----------------CEEEEcCCCcHHHHHH-HHHcCCeE------------------------
Confidence 999963111111112 3788888888764322 22221110
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
..++++.... ++ +. -+ .+.|++.+. .++.+|++... ++..|.
T Consensus 218 ----~~v~~~~~~~-----------~~----~~--~d--------~~~l~~~l~--------~~~k~v~l~~p-~NPtG~ 259 (533)
T 3f6t_A 218 ----VEVDLHSYEK-----------ND----WE--IE--------PNEIEKLKD--------PSIKALIVVNP-TNPTSK 259 (533)
T ss_dssp ----EEECCCEETT-----------TT----SE--EC--------HHHHHHHSC--------TTEEEEEEESS-CTTTCB
T ss_pred ----EEEEecCCcc-----------cC----CC--CC--------HHHHHHHhC--------CCCeEEEEeCC-CCCCcc
Confidence 0111110000 00 00 00 245666553 35667766543 677777
Q ss_pred ccCCHHHHHHHHHHHH-hcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc-CCccccceeecchH
Q 003466 636 HMVDPLFQRILVKECQ-NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA 706 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~-~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~ 706 (818)
+. +.+.+++|.++|+ +||+++|+||++.+|...+........+....+.+|||.+| .| +++|+++++++
T Consensus 260 ~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~ 330 (533)
T 3f6t_A 260 EF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTG-WRLGVIALNEK 330 (533)
T ss_dssp CC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGG-GCEEEEEEESS
T ss_pred cc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcc-cceEEEEECcH
Confidence 66 7888999999999 69999999999998865443332222234455779999998 67 79999999876
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=150.76 Aligned_cols=281 Identities=15% Similarity=0.049 Sum_probs=164.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
||+|.+|+.+++....+ +..+...+|.++|+++++. +..+|++||++|++.|++.+. .
T Consensus 28 ~p~v~~ai~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~i~~~~g~~a~~~a~~~~~-~------------- 85 (359)
T 3pj0_A 28 LTEALQNIDDNLESDIY-----GNGAVIEDFETKIAKILGK---QSAVFFPSGTMAQQIALRIWA-D------------- 85 (359)
T ss_dssp HHHHTTTSCTTCBCCBT-----TBSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHH-H-------------
T ss_pred CHHHHHHHHhhcccCcc-----cCCHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHH-h-------------
Confidence 46677777664432211 2356788999999999874 566777999999999999872 1
Q ss_pred CCccccccceEEEEEcCCCCCCcccc--c-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGA--M-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~a--l-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
++...+|..+..+|...... + ...|.. .+.+|...
T Consensus 86 ------~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~------------------------------~~~v~~~~------ 123 (359)
T 3pj0_A 86 ------RKENRRVAYHPLSHLEIHEQDGLKELQQIT------------------------------PLLLGTAN------ 123 (359)
T ss_dssp ------HHTCCEEEECTTCHHHHSSTTHHHHHHCCE------------------------------EEECSCTT------
T ss_pred ------cCCCcEEEEeccceeeehhcchHHHhcCce------------------------------EEecCCcC------
Confidence 11233666666666533221 1 111111 01111000
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
. ..| .+.+++. .+++++|++++. ++..|..++|.+++++|.++|++||
T Consensus 124 ---~-~~d------------------~~~l~~~---------~~~~~~v~~~~p-~n~~~G~~~~~~~l~~l~~~~~~~~ 171 (359)
T 3pj0_A 124 ---Q-LLT------------------IDDIKSL---------REPVSSVLIELP-QREIGGQLPAFEELEKISEYCHEQG 171 (359)
T ss_dssp ---S-CCC------------------HHHHHTC---------SSCCSEEEEESS-BGGGTSBCCCHHHHHHHHHHHHHHT
T ss_pred ---C-CcC------------------HHHHHhc---------cCCceEEEEEec-ccCCCcccCCHHHHHHHHHHHHHcC
Confidence 0 001 1333322 346789999986 6555434558999999999999999
Q ss_pred CcEEEeecccCcc--cCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccC-------C----hH---
Q 003466 655 IPVIFDEVFTGFW--RLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG-------D----SK--- 716 (818)
Q Consensus 655 ilLI~DEV~TGfG--RtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~-------~----~~--- 716 (818)
++||+||++..+. ..|... ..+.-..|++ +++|+++++. . +.+++++++++.+.. . ..
T Consensus 172 ~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~sK~~~~~~-g-g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (359)
T 3pj0_A 172 ISLHLDGARLWEITPFYQKSA--EEICALFDSVYVSFYKGIGGIA-G-AILAGNDDFVQEAKIWKRRYGGDLISLYPYIL 247 (359)
T ss_dssp CEEEEEETTCGGGHHHHTCCH--HHHHTTCSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHH
T ss_pred CEEEEECcchhcchhhhCCCH--HHhhccCCEEEEeccccCCCcc-e-EEEECCHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 9999999974221 111111 1111234666 8999988752 2 567788888876532 0 00
Q ss_pred ----H-------------HHHHHHHHHHcCCCeeEE--EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec
Q 003466 717 ----L-------------WDLELIQQISSHRTVQRV--VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL 777 (818)
Q Consensus 717 ----~-------------~~~~l~~~l~~~~~v~~v--rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~ 777 (818)
. ..+.+.+.+++++.+.-. ...+.++-+.+... ....+..+.+.|.++||++++.
T Consensus 248 a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~GV~v~~g 321 (359)
T 3pj0_A 248 SADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENS------ADEIGAILTKIQDETGVGISGY 321 (359)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSC------HHHHHHHHHHHHHHHCEECCSC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCc------cchhHHHHHHHHHhcCcEecCC
Confidence 0 012244556666554322 12334444445322 1123567888999999999874
Q ss_pred C-------CEEEEECC---CCChHHHHHHHHHHHHHH
Q 003466 778 G-------NVIYLMCG---PCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 778 g-------~~ir~~pp---l~~t~edId~~~~~l~~~ 804 (818)
. ..+|+... ...+.+++++++++|.++
T Consensus 322 ~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 322 LQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp CEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 1 35666543 346788888888888765
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-12 Score=142.48 Aligned_cols=302 Identities=13% Similarity=0.072 Sum_probs=175.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
.+||+.++.. .++ . +|.+.+|+.++++.. ..+....+..+...++++.+....+.. ..+.++++++|++|+..+
T Consensus 32 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~ 107 (385)
T 1b5p_A 32 DLVALTAGEP--DFD-T-PEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL 107 (385)
T ss_dssp CCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHH
Confidence 5667665422 233 2 689999999888652 111111234556667777776544321 125899999999999999
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++... ..| ..|++...+|++... .+...|...
T Consensus 108 ~~~l~-----~~g----------------d~Vlv~~p~y~~~~~-~~~~~g~~~-------------------------- 139 (385)
T 1b5p_A 108 FQAIL-----DPG----------------DEVIVLSPYWVSYPE-MVRFAGGVV-------------------------- 139 (385)
T ss_dssp HHHHC-----CTT----------------CEEEEEESCCTHHHH-HHHHTTCEE--------------------------
T ss_pred HHHhc-----CCC----------------CEEEEcCCCchhHHH-HHHHcCCEE--------------------------
Confidence 98761 122 368888888876432 222222110
Q ss_pred cceeecCc--chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCC
Q 003466 558 SKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGG 634 (818)
Q Consensus 558 ~~~~v~~P--~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG 634 (818)
..++.. +.+ -.| .+.+++.+. .++.+|++ .| ++..|
T Consensus 140 --~~v~~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~p--~NPtG 178 (385)
T 1b5p_A 140 --VEVETLPEEGF-----------VPD------------------PERVRRAIT--------PRTKALVVNSP--NNPTG 178 (385)
T ss_dssp --EEEECCGGGTT-----------CCC------------------HHHHHTTCC--------TTEEEEEEESS--CTTTC
T ss_pred --EEeecCcccCC-----------CCC------------------HHHHHHhcC--------CCCEEEEEeCC--CCCCC
Confidence 011110 000 001 144555443 23555554 55 56667
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcE--EEeccccc-CCccccceeecchHHHhhc
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLT-GGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi--vtlgKgLg-gGy~PlsAvl~~~~i~~~l 711 (818)
.+. +.+.+++|.++|++||+++|+||++..|...|.......+.-..++ .++||.+| .| +.+|++++++++++.+
T Consensus 179 ~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l 256 (385)
T 1b5p_A 179 AVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAM 256 (385)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred CCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcc-cceEEEEeCHHHHHHH
Confidence 655 7899999999999999999999999877444422222222111233 37999998 57 7999999998887654
Q ss_pred cCC--------hH--------HHH------H--------------HHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCC
Q 003466 712 VGD--------SK--------LWD------L--------------ELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAG 754 (818)
Q Consensus 712 ~~~--------~~--------~~~------~--------------~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~ 754 (818)
... .. .+. + .+.+.+++++ +.-.... |.++-+.+...+
T Consensus 257 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~---- 331 (385)
T 1b5p_A 257 ASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG-LKAVRPSGAFYVLMDTSPIA---- 331 (385)
T ss_dssp HHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCSBTTEEEEECTTTC----
T ss_pred HHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEEecCCCC----
Confidence 310 00 111 0 1122233322 1111122 333333332110
Q ss_pred CchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
..+..+++.|.++||++.++ .+.+|+... .++++|++++++|.++++
T Consensus 332 ---~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 332 ---PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp ---SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred ---CCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 12456888888999999874 268999865 788899999998877654
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-13 Score=150.79 Aligned_cols=256 Identities=14% Similarity=0.112 Sum_probs=165.5
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+++++|+++.+. +..++++||++|+..+++... +.| ..||+.+..||+
T Consensus 111 ~~~~~~~~l~~~lA~l~g~---~~~v~~~sG~~Ai~~al~~l~-----~~G----------------d~Vi~~~~~y~~- 165 (445)
T 1qgn_A 111 YGNPTTVVLEEKISALEGA---ESTLLMASGMCASTVMLLALV-----PAG----------------GHIVTTTDCYRK- 165 (445)
T ss_dssp GCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHS-----CSS----------------CEEEEETTSCHH-
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEcCCCchh-
Confidence 3477888999999999874 477888999999999999551 122 378888887776
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
+...+... .. + .|. ....+| .+|
T Consensus 166 ~~~~~~~~-~~--~----------~G~-------------~v~~v~--------------~~d----------------- 188 (445)
T 1qgn_A 166 TRIFIETI-LP--K----------MGI-------------TATVID--------------PAD----------------- 188 (445)
T ss_dssp HHHHHHHT-GG--G----------GTC-------------EEEEEC--------------SSC-----------------
T ss_pred HHHHHHHH-HH--H----------cCC-------------EEEEeC--------------CCC-----------------
Confidence 33321100 00 0 000 000011 122
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.|.. +.+++|++|++ ++..|.+.+ +++|.++|++||+++|+||+++.+ .. ...+.
T Consensus 189 -~~~l~~ai~~-------~tv~lV~le~p-~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~-~~-----~~~~~ 249 (445)
T 1qgn_A 189 -VGALELALNQ-------KKVNLFFTESP-TNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP-LN-----QKALA 249 (445)
T ss_dssp -HHHHHHHHHH-------SCEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT-TT-----CCTTT
T ss_pred -HHHHHHHhcc-------CCCCEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc-cc-----CCccc
Confidence 2566777752 33589999997 888898875 899999999999999999999622 11 12234
Q ss_pred CCCcEEE--ecccccCCc-cccceeecchHHHhhccCChH-------------------H----HH------HHHHHHHH
Q 003466 680 CVPDIAC--YGKLLTGGV-IPLAATLATNAVFDSFVGDSK-------------------L----WD------LELIQQIS 727 (818)
Q Consensus 680 v~PDivt--lgKgLggGy-~PlsAvl~~~~i~~~l~~~~~-------------------~----~~------~~l~~~l~ 727 (818)
..+|+++ ++|.+||+. +++|++++++++++.+..... . ++ ..+.+.|+
T Consensus 250 ~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~ 329 (445)
T 1qgn_A 250 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILE 329 (445)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689986 899998742 478999999988775532100 0 00 12345567
Q ss_pred cCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-------------
Q 003466 728 SHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------------- 776 (818)
Q Consensus 728 ~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p------------- 776 (818)
++|.+..| +|.|.++.|++.... ..+..+...|...|+.++.
T Consensus 330 ~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-------~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~ 402 (445)
T 1qgn_A 330 AHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-------LTTAKFVDALKIPYIAPSFGGCESIVDQPAIM 402 (445)
T ss_dssp TCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-------HHHHHHHHHCSSSEECSCCCSSSCEEECHHHH
T ss_pred cCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-------HHHHHHHHhCCCceEeccCCCCceeeeccccc
Confidence 77766444 357889999986431 2355566665422332110
Q ss_pred ------------c---CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 777 ------------L---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 777 ------------~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
. .+.||++.- .||+|.+++.|+++++.
T Consensus 403 ~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 403 SYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp HSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 1 268888865 46899999999998864
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=147.99 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=115.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc--CCcEEEeecccCcccCCccchhcccC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~--gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
+.|++.+.+ .++++|+++++ ++..|.+.+ +++|.++|++| |+++|+||+++ +|.. .+....+
T Consensus 127 ~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~- 190 (385)
T 2bkw_A 127 ELITEKLSQ-------NSYGAVTVTHV-DTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW- 190 (385)
T ss_dssp HHHHHHHHH-------SCCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT-
T ss_pred HHHHHHHhc-------CCCCEEEEEcc-CCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc-
Confidence 566777752 25678899997 888898876 89999999999 99999999995 4432 1222223
Q ss_pred CCCcEEEe--cccccCCccccceeecchHHHh-hc-------------------------cC------ChH---------
Q 003466 680 CVPDIACY--GKLLTGGVIPLAATLATNAVFD-SF-------------------------VG------DSK--------- 716 (818)
Q Consensus 680 v~PDivtl--gKgLggGy~PlsAvl~~~~i~~-~l-------------------------~~------~~~--------- 716 (818)
.+|++++ +|.++|+ ..+|++++++++++ .+ .. ...
T Consensus 191 -~~d~~~~s~~K~~~~~-~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 268 (385)
T 2bkw_A 191 -GVDFALTASQKAIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLD 268 (385)
T ss_dssp -TCSEEEEESSSTTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHH
T ss_pred -CceEEEecCccccccC-CcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHH
Confidence 4687754 6999875 35688999887765 32 10 000
Q ss_pred ----HHH---------------HHHHHHH-HcCCCeeEEE------eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhC
Q 003466 717 ----LWD---------------LELIQQI-SSHRTVQRVV------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED 770 (818)
Q Consensus 717 ----~~~---------------~~l~~~l-~~~~~v~~vr------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~ 770 (818)
.+. +.+.+.+ ++.+ +.-+. ..+.++.+.+.. +..+.+.|.++
T Consensus 269 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~ 336 (385)
T 2bkw_A 269 VALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQ-LTSVSRYPSNMSAHGLTAVYVAD-----------PPDVIAFLKSH 336 (385)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTC-CEESSCSSSTTBCSSCEEEECSC-----------HHHHHHHHHHT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcC-ceecccCcccccCCceEEEecCC-----------HHHHHHHHHHC
Confidence 000 1122334 3332 21111 135555555421 45688889999
Q ss_pred CceEeec------CCEEEEE-CC---CCChHHHHHHHHHHHHHHHHH
Q 003466 771 GVYMRPL------GNVIYLM-CG---PCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 771 Gvlv~p~------g~~ir~~-pp---l~~t~edId~~~~~l~~~l~~ 807 (818)
||.+.+. .+.+|+. .+ ..+|++|+++++++|++++++
T Consensus 337 gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 337 GVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp TEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred CeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 9999873 3689988 43 257999999999999988654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-12 Score=140.51 Aligned_cols=277 Identities=12% Similarity=0.093 Sum_probs=172.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
.|++++|+.+++++.... ....+...+|.++|+++++. +..++++||++|++.|++.+ + -..
T Consensus 16 ~~~~~~a~~~~l~~~~~~---~~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~al~~~l~~l-~---~~~-------- 77 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWW---RMGGDEVNSFEREFAAHHGA---AHALAVTNGTHALELALQVM-G---VGP-------- 77 (388)
T ss_dssp CHHHHHHHHHHHHTSCCB---TTTCSHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T---CCT--------
T ss_pred CHHHHHHHHHHHHcCCee---ecCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-C---CCC--------
Confidence 489999999999763211 12356788999999999974 46777889999999999976 1 111
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~ 576 (818)
..+||+...+||+.... +...|... ..++.. +.+
T Consensus 78 --------gd~Vi~~~~~~~~~~~~-~~~~g~~~----------------------------~~v~~~~~~~-------- 112 (388)
T 1b9h_A 78 --------GTEVIVPAFTFISSSQA-AQRLGAVT----------------------------VPVDVDAATY-------- 112 (388)
T ss_dssp --------TCEEEEESSSCTHHHHH-HHHTTCEE----------------------------EEECBCTTTC--------
T ss_pred --------cCEEEECCCccHHHHHH-HHHcCCEE----------------------------EEEecCCCcC--------
Confidence 13789999999886432 22222110 001100 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+. .++++|+ |. +. .|.+.+ +++|.++|++||++
T Consensus 113 ---~~d------------------~~~l~~~i~--------~~~~~v~--~~-n~-tG~~~~----l~~i~~la~~~~~~ 155 (388)
T 1b9h_A 113 ---NLD------------------PEAVAAAVT--------PRTKVIM--PV-HM-AGLMAD----MDALAKISADTGVP 155 (388)
T ss_dssp ---CBC------------------HHHHHHHCC--------TTEEEEC--CB-CG-GGCCCC----HHHHHHHHHHHTCC
T ss_pred ---CCC------------------HHHHHHhcC--------cCceEEE--Ee-CC-ccCcCC----HHHHHHHHHHcCCE
Confidence 011 255666663 2566666 65 44 465554 89999999999999
Q ss_pred EEEeeccc-CcccCCccchhcccCCCCcEEEec----ccccCCccccceeecchH-H--Hhhc---cC------------
Q 003466 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNA-V--FDSF---VG------------ 713 (818)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~~~-i--~~~l---~~------------ 713 (818)
+|+||+|+ |+...|... ..++ |+.++| |+++|| .+|+++++++ + ++.+ ..
T Consensus 156 li~D~a~~~g~~~~~~~~--~~~~---~i~~~S~s~~K~l~g~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (388)
T 1b9h_A 156 LLQDAAHAHGARWQGKRV--GELD---SIATFSFQNGKLMTAG--EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFH 228 (388)
T ss_dssp BCEECTTCTTCEETTEEG--GGSS---SCEEEECCTTSSSCSS--SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCC
T ss_pred EEEecchhcCCccCCeec--cccc---ceEEEEccCCCcccCC--CeEEEEECCHHHHHHHHHHHHHhCCCCccCcccee
Confidence 99999996 443333321 2233 666555 999886 4788888765 5 4432 10
Q ss_pred ----C----hH-----------H----------HHHHHHHHHHcCCCeeEE-------EeeeeEEEEEEecCcccCCCch
Q 003466 714 ----D----SK-----------L----------WDLELIQQISSHRTVQRV-------VALGTLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 714 ----~----~~-----------~----------~~~~l~~~l~~~~~v~~v-------rg~Gl~~~iel~~~~~~~~~~~ 757 (818)
. .. . ..+.+.+.|++++.+.-+ +..+.++.+.+... ..
T Consensus 229 ~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 302 (388)
T 1b9h_A 229 KIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL------TE 302 (388)
T ss_dssp CSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC------CH
T ss_pred ecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCc------Cc
Confidence 0 00 0 012234455666543222 12356677766421 01
Q ss_pred HHHHHHHHHHHhCCceEeecC----------------------------------CEEEEECCCCC-hHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLREDGVYMRPLG----------------------------------NVIYLMCGPCS-SPEVCSQLLLKLY 802 (818)
Q Consensus 758 ~~a~~~~~~l~e~Gvlv~p~g----------------------------------~~ir~~ppl~~-t~edId~~~~~l~ 802 (818)
..+..+.+.|.++||.+++.- ..||+.....+ |++||++++++|.
T Consensus 303 ~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~ 382 (388)
T 1b9h_A 303 ERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIA 382 (388)
T ss_dssp HHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHH
Confidence 235678899999999997521 14777777778 9999999999999
Q ss_pred HHHHH
Q 003466 803 QRLEE 807 (818)
Q Consensus 803 ~~l~~ 807 (818)
+++++
T Consensus 383 ~~~~~ 387 (388)
T 1b9h_A 383 DAVAR 387 (388)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88754
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=148.78 Aligned_cols=274 Identities=14% Similarity=0.065 Sum_probs=160.8
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccc
Q 003466 413 PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (818)
Q Consensus 413 lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~ 492 (818)
+|++ +|.+.+++.+++.+...... ....+...++.++|+++++. ++++|++||++|++.|++.+ + -..
T Consensus 7 ~~~~-~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~---~~~~~~~sGt~al~~al~~~-~---~~~--- 74 (367)
T 3nyt_A 7 LKNQ-QARIKDKIDAGIQRVLRHGQ-YILGPEVTELEDRLADFVGA---KYCISCANGTDALQIVQMAL-G---VGP--- 74 (367)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHCC-CSSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-T---CCT---
T ss_pred cccc-ccccCHHHHHHHHHHHhcCC-ccCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHh-C---CCC---
Confidence 4556 65555555554443211111 12467788999999999974 58999999999999999977 2 111
Q ss_pred ccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhh
Q 003466 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSK 571 (818)
Q Consensus 493 ~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~ 571 (818)
..+||+...+|++... ++...|.... .++.. +.+
T Consensus 75 -------------gd~Vi~~~~~~~~~~~-~~~~~G~~~~----------------------------~~~~~~~~~--- 109 (367)
T 3nyt_A 75 -------------GDEVITPGFTYVATAE-TVALLGAKPV----------------------------YVDIDPRTY--- 109 (367)
T ss_dssp -------------TCEEEEESSSCTHHHH-HHHHTTCEEE----------------------------EECBCTTTC---
T ss_pred -------------cCEEEECCCccHHHHH-HHHHcCCEEE----------------------------EEecCCccC---
Confidence 2368888888877443 3332222100 00000 000
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~ 651 (818)
..|+ +.+++.+. +++++|++++. . |... .+++|+++|+
T Consensus 110 --------~~d~------------------~~l~~~i~--------~~~~~v~~~~~-~---G~~~----~~~~i~~la~ 147 (367)
T 3nyt_A 110 --------NLDP------------------QLLEAAIT--------PRTKAIIPVSL-Y---GQCA----DFDAINAIAS 147 (367)
T ss_dssp --------SBCG------------------GGTGGGCC--------TTEEEECCBCG-G---GCCC----CHHHHHHHHH
T ss_pred --------CcCH------------------HHHHHhcC--------cCCcEEEeeCC-c---cChh----hHHHHHHHHH
Confidence 0111 23333332 46788885554 2 4333 3999999999
Q ss_pred hcCCcEEEeeccc-CcccCCccchhcccCCCCcEEEec----ccccC-Cccccceeec-chHHHhhccC---C-------
Q 003466 652 NRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLA-TNAVFDSFVG---D------- 714 (818)
Q Consensus 652 ~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg----KgLgg-Gy~PlsAvl~-~~~i~~~l~~---~------- 714 (818)
+||+++|+||+|+ |+...|+ ..+..+|++++| |.+|+ |. .|++++ ++++++.+.. .
T Consensus 148 ~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~ 220 (367)
T 3nyt_A 148 KYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYH 220 (367)
T ss_dssp HTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTE
T ss_pred HcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCce
Confidence 9999999999995 4433333 233334999987 99998 73 677777 4666553311 0
Q ss_pred -------hH------------------------HHHHHHHHHHHcCCCe--e---EEEeeeeEEEEEEecCcccCCCchH
Q 003466 715 -------SK------------------------LWDLELIQQISSHRTV--Q---RVVALGTLCAIELQAAGCNAGYGSL 758 (818)
Q Consensus 715 -------~~------------------------~~~~~l~~~l~~~~~v--~---~vrg~Gl~~~iel~~~~~~~~~~~~ 758 (818)
.. .+.+.+.+.+++.+.. . .......++.+.+. +
T Consensus 221 ~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------- 290 (367)
T 3nyt_A 221 HIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD-N--------- 290 (367)
T ss_dssp ECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS-S---------
T ss_pred eeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC-C---------
Confidence 00 0011233444444321 0 01111222333322 1
Q ss_pred HHHHHHHHHHhCCceEeec-------------------------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLREDGVYMRPL-------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 759 ~a~~~~~~l~e~Gvlv~p~-------------------------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
...+.+.|.++||.+++. ...+++......|++||+++++++.+
T Consensus 291 -~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 291 -RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp -HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 456888999999988641 13577776778899999999998854
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-12 Score=142.35 Aligned_cols=191 Identities=13% Similarity=0.068 Sum_probs=123.6
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
.|++.+|+.++++.. +.. ...+...+|.++|+++++. +.++|++||++|++.+++.+ + ...
T Consensus 11 ~~~v~~a~~~~~~~~-~~~---~~g~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~l-~---~~~-------- 71 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIA---PLGEFVNRFEQSVKDYSKS---ENALALNSATAALHLALRVA-G---VKQ-------- 71 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTS---CTTHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T---CCT--------
T ss_pred CHHHHHHHHHHHHcC-Ccc---CCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C---CCC--------
Confidence 467888888887652 211 1235678999999999873 78999999999999999976 1 111
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (818)
..+|++...+||+..... ...|... ..++....+
T Consensus 72 --------gd~Vl~~~~~~~~~~~~~-~~~g~~~----------------------------~~v~~~~~~--------- 105 (394)
T 1o69_A 72 --------DDIVLASSFTFIASVAPI-CYLKAKP----------------------------VFIDCDETY--------- 105 (394)
T ss_dssp --------TCEEEEESSSCGGGTHHH-HHTTCEE----------------------------EEECBCTTS---------
T ss_pred --------CCEEEECCCccHHHHHHH-HHcCCEE----------------------------EEEEeCCCC---------
Confidence 237899999988865332 2222110 001110000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
..| .+.+++.+.+ .++++++|++++. .| . ...+++|.++|++||+++
T Consensus 106 --~~d------------------~~~l~~~i~~-----~~~~~~~v~~~~~-~G---~----~~~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 106 --NID------------------VDLLKLAIKE-----CEKKPKALILTHL-YG---N----AAKMDEIVEICKENDIVL 152 (394)
T ss_dssp --SBC------------------HHHHHHHHHH-----CSSCCCEEEEECG-GG---C----CCCHHHHHHHHHHTTCEE
T ss_pred --CcC------------------HHHHHHHHhc-----ccCCceEEEEECC-CC---C----hhhHHHHHHHHHHcCCEE
Confidence 011 2556677753 1235778888885 33 2 345999999999999999
Q ss_pred EEeeccc-CcccCCccchhcccCCCCcEEEe--cccccCCccccceeecc-hHHHhhc
Q 003466 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSF 711 (818)
Q Consensus 658 I~DEV~T-GfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~-~~i~~~l 711 (818)
|+||+++ |+...|.... . ++ ..|+.++ +|+++|+ -+|+++++ +++++.+
T Consensus 153 i~Dea~~~g~~~~~~~~~-~-~~-~~~~~s~s~~K~l~~~--~~G~~~~~~~~l~~~l 205 (394)
T 1o69_A 153 IEDAAEALGSFYKNKALG-T-FG-EFGVYSYNGNKIITTS--GGGMLIGKNKEKIEKA 205 (394)
T ss_dssp EEECTTCTTCEETTEETT-S-SS-SEEEEECCTTSSSCCS--SCEEEEESCHHHHHHH
T ss_pred EEECcCcccceeCCcccc-c-cc-CcEEEEEeCCccCCCC--CceEEEECCHHHHHHH
Confidence 9999998 7655554221 1 11 3688888 6889865 48888885 7776543
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-12 Score=138.81 Aligned_cols=274 Identities=10% Similarity=-0.041 Sum_probs=167.3
Q ss_pred CHHHHHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccc
Q 003466 418 QIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~ 495 (818)
+|++.+++.+++..-. .........+...++.++++++++...-+.++++++|++|+..+++..
T Consensus 16 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l-------------- 81 (362)
T 3ffr_A 16 YPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNC-------------- 81 (362)
T ss_dssp CTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhc--------------
Confidence 7899988888776522 111000112456778888888876422357999999999999999976
Q ss_pred cCCCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 496 LGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
.++ +++.....+++.... .....|.. ...++.+..+
T Consensus 82 --------~~~-~~i~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------ 118 (362)
T 3ffr_A 82 --------VEK-KSFHCVNGSFSKRFYEFAGELGRE----------------------------AYKEEAAFGK------ 118 (362)
T ss_dssp --------CSS-EEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC------
T ss_pred --------cCC-cEEEEcCcHHHHHHHHHHHHhCCC----------------------------eEEEecCCCC------
Confidence 112 666666666652211 11111111 0011111000
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc-
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR- 653 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~- 653 (818)
..|+ +.++ + ..++.+|+++.. ++..|.+.+ +++|.++|++|
T Consensus 119 -----~~d~------------------~~l~--~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~p 160 (362)
T 3ffr_A 119 -----GFYP------------------ADIT--V--------PADAEIICLTHN-ETSSGVSMP----VEDINTFRDKNK 160 (362)
T ss_dssp -----CCCG------------------GGCC--C--------CTTCCEEEEESE-ETTTTEECC----HHHHTTSGGGST
T ss_pred -----CCCH------------------HHHh--c--------cCCccEEEEEcC-CCCcceeCC----HHHHHHHHHhCC
Confidence 0111 1222 1 245778888886 888898886 99999999999
Q ss_pred CCcEEEeecccCcccCCccchhcccCC-CCcEEE--ecccccCCccccceeecchHHHhhccC-----------------
Q 003466 654 KIPVIFDEVFTGFWRLGVETTADLLGC-VPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVG----------------- 713 (818)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~~----------------- 713 (818)
|+++|+||+++ +|-.. .++ ..|+++ ++|.++|+ .-++.+++++++++.+..
T Consensus 161 ~~~li~D~a~~-~~~~~-------~~~~~~d~~~~s~~K~~~~~-~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~ 231 (362)
T 3ffr_A 161 DALIFVDAVSS-LPYPK-------FDWTKIDSVFFSVQKCFGLP-AGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSM 231 (362)
T ss_dssp TSEEEEECTTT-TTSSC-------CCTTSCSEEEEETTSTTCCC-SCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHH
T ss_pred CCEEEEecccc-cCCcc-------cChhHCcEEEEecccccCCC-CceEEEEECHHHHHHhhhccccCCCCcccccHHHH
Confidence 99999999985 32211 111 178875 55999853 235778888887654321
Q ss_pred ----------ChH----------HH------------------HHHHHHHHHcCCCeeEEE-----eeeeEEEEEEecCc
Q 003466 714 ----------DSK----------LW------------------DLELIQQISSHRTVQRVV-----ALGTLCAIELQAAG 750 (818)
Q Consensus 714 ----------~~~----------~~------------------~~~l~~~l~~~~~v~~vr-----g~Gl~~~iel~~~~ 750 (818)
... .+ .+.+.+.+++++.+.-+. ..+.++.+.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 309 (362)
T 3ffr_A 232 LEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM-- 309 (362)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--
T ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--
Confidence 000 00 012234455555442221 124455555543
Q ss_pred ccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 751 CNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 751 ~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+..+.+.|.++||.+.++ ++.+|+.+....+++|+++++++|++.+
T Consensus 310 --------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 310 --------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp --------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 1567889999999999862 4789999999899999999999998753
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=138.34 Aligned_cols=249 Identities=12% Similarity=0.078 Sum_probs=161.3
Q ss_pred CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.++...+|.++|+++.+. +.+++++||++|+..+++... +.| ..||+.+..|++..
T Consensus 60 ~~~~~~~l~~~ia~~~g~---~~~i~~~~g~~ai~~~~~~l~-----~~g----------------d~Vl~~~~~y~~~~ 115 (404)
T 1e5e_A 60 GNPTVSNLEGKIAFLEKT---EACVATSSGMGAIAATVLTIL-----KAG----------------DHLISDECLYGCTH 115 (404)
T ss_dssp CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESCCCHHHH
T ss_pred cChHHHHHHHHHHHHhCC---CcEEEeCChHHHHHHHHHHHh-----CCC----------------CEEEEeCCCchhHH
Confidence 467778999999999874 588899999999999998651 222 36888888777632
Q ss_pred cc---cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHH
Q 003466 521 LG---AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (818)
Q Consensus 521 ~~---als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~ 597 (818)
.. .+...|.. .+.+| .+|.
T Consensus 116 ~~~~~~~~~~g~~------------------------------~~~v~--------------~~d~-------------- 137 (404)
T 1e5e_A 116 ALFEHALTKFGIQ------------------------------VDFIN--------------TAIP-------------- 137 (404)
T ss_dssp HHHHTHHHHTTCE------------------------------EEEEC--------------TTST--------------
T ss_pred HHHHHHHHHcCCE------------------------------EEEEC--------------CCCH--------------
Confidence 10 11111110 01111 1121
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh-cCCcEEEeecccCcccCCccchhc
Q 003466 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 598 ~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~-~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
+.+++.+. .++++|+++.. ++..|.+.+ +++|.++|++ ||+++|+||+++.+.. ....
T Consensus 138 ----~~l~~~i~--------~~t~~v~l~~p-~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~-~~~~--- 196 (404)
T 1e5e_A 138 ----GEVKKHMK--------PNTKIVYFETP-ANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI-TNPV--- 196 (404)
T ss_dssp ----THHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT-CCGG---
T ss_pred ----HHHHHhcC--------CCCcEEEEECC-CCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh-CCcc---
Confidence 34555553 36789999987 888898875 9999999999 9999999999986632 2221
Q ss_pred ccCCCCcEE--EecccccCCcccc-ceeecchHHHh-hccC---C---hH-----------H---H---H-------HHH
Q 003466 677 LLGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFD-SFVG---D---SK-----------L---W---D-------LEL 722 (818)
Q Consensus 677 ~~gv~PDiv--tlgKgLggGy~Pl-sAvl~~~~i~~-~l~~---~---~~-----------~---~---~-------~~l 722 (818)
.+| .|++ +++|.+++.-.++ |++++++++++ .+.. . .. . + . +.+
T Consensus 197 ~~~--~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 274 (404)
T 1e5e_A 197 DFG--VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKV 274 (404)
T ss_dssp GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccC--CEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 234 5665 7999998644687 89999988776 4321 1 10 0 0 0 112
Q ss_pred HHHHHcCCCeeE------------------EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------
Q 003466 723 IQQISSHRTVQR------------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------- 777 (818)
Q Consensus 723 ~~~l~~~~~v~~------------------vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------- 777 (818)
.+.+++++.+.. .++.|.++.+++... ...+.+.+.+.||++...
T Consensus 275 ~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~~i~~~~~s~G~~~s 344 (404)
T 1e5e_A 275 AEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG----------FEGAKKLLDNLKLITLAVSLGGCES 344 (404)
T ss_dssp HHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH----------HHHHHHHHHTCSSSEESSCCCSSSC
T ss_pred HHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC----------HHHHHHHHHhCCCceeccCCCCcce
Confidence 233445543322 234588888877421 123445566778865431
Q ss_pred ------------------------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 778 ------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 778 ------------------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+.+|+++.. |+++++++.|+++++.+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 345 LIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDAL 395 (404)
T ss_dssp EEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred eeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 2689999887 88999999999888654
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=138.24 Aligned_cols=283 Identities=15% Similarity=0.069 Sum_probs=172.9
Q ss_pred CHHHHHHHHHhhhhcccc--cCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccc
Q 003466 418 QIELARDMGYTAARFGHV--MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~--~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~ 495 (818)
+|++++|+.+++++.... ....+..+...+++++|+++++. +.++|++||++|++.|++.+ + -..|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~---~~~i~~~~gt~al~~~~~~~-~---~~~g----- 82 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV---PYCVPTTSGSTALMLALEAL-G---IGEG----- 82 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-T---CCTT-----
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C---CCCc-----
Confidence 689999999999764221 11123355688999999999874 57888999999999999976 1 0111
Q ss_pred cCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc-hhhhhccc
Q 003466 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVE 574 (818)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~-~~~~~~~~ 574 (818)
.+||+...+||+.... +...|... ..++... .+
T Consensus 83 -----------d~Vl~~~~~~~~~~~~-~~~~g~~~----------------------------~~~~~~~~~~------ 116 (418)
T 2c81_A 83 -----------DEVIVPSLTWIATATA-VLNVNALP----------------------------VFVDVEADTY------ 116 (418)
T ss_dssp -----------CEEEEESSSCTHHHHH-HHHTTCEE----------------------------EEECBCTTTC------
T ss_pred -----------CEEEECCCccHhHHHH-HHHcCCEE----------------------------EEEecCCCCC------
Confidence 3789999998876533 22222110 0011000 00
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
..| .+.+++.+. .++++|++... .|... .+++|.++|++||
T Consensus 117 -----~~d------------------~~~l~~~i~--------~~~~~v~~~~~----~G~~~----~~~~i~~~~~~~~ 157 (418)
T 2c81_A 117 -----CID------------------PQLIKSAIT--------DKTKAIIPVHL----FGSMA----NMDEINEIAQEHN 157 (418)
T ss_dssp -----SBC------------------HHHHGGGCC--------TTEEEECCBCC----TTCCC----CHHHHHHHHHHTT
T ss_pred -----CcC------------------HHHHHHhhC--------CCCeEEEEeCC----cCCcc----cHHHHHHHHHHCC
Confidence 001 144554443 35778887653 34433 3999999999999
Q ss_pred CcEEEeecccCccc-CCccchhcccCCCCcEEE--e--cccccCCccccceeecc-hHHHhhcc----------------
Q 003466 655 IPVIFDEVFTGFWR-LGVETTADLLGCVPDIAC--Y--GKLLTGGVIPLAATLAT-NAVFDSFV---------------- 712 (818)
Q Consensus 655 ilLI~DEV~TGfGR-tG~~~a~e~~gv~PDivt--l--gKgLggGy~PlsAvl~~-~~i~~~l~---------------- 712 (818)
+++|+||+++.+.+ .|. ..+..+|+++ | +|.+++| .+|+++++ +++++.+.
T Consensus 158 ~~li~D~a~~~~~~~~~~-----~~~~~~~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T 2c81_A 158 LFVIEDCAQSHGSVWNNQ-----RAGTIGDIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSEL 230 (418)
T ss_dssp CEEEEECTTCTTCEETTE-----ETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGC
T ss_pred CEEEEECcccccCccCCE-----ecccccceEEEeccCCcccCCC--CeEEEEECCHHHHHHHHHHHHhCcccccccccc
Confidence 99999999976542 232 2233346654 4 9999886 68888884 66544221
Q ss_pred ----C--C----------------hHH-------H----------HHHHHHHHHcCCCeeEE-Eeee------eEEEEEE
Q 003466 713 ----G--D----------------SKL-------W----------DLELIQQISSHRTVQRV-VALG------TLCAIEL 746 (818)
Q Consensus 713 ----~--~----------------~~~-------~----------~~~l~~~l~~~~~v~~v-rg~G------l~~~iel 746 (818)
. . ..+ + .+.+.+.+.+.+.+.-. ...| .++.+.+
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (418)
T 2c81_A 231 MHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRF 310 (418)
T ss_dssp CTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEE
T ss_pred ccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEE
Confidence 0 0 000 0 01223444555443221 1111 2444666
Q ss_pred ecCcccCCCchHHHHHHHHHHHhC-Cce---Eeec-------------------------------C----------CEE
Q 003466 747 QAAGCNAGYGSLYAASLLKKLRED-GVY---MRPL-------------------------------G----------NVI 781 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~-Gvl---v~p~-------------------------------g----------~~i 781 (818)
.... .. ......+.+.|.++ ||. +++. + ..+
T Consensus 311 ~~~~-~~---~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 386 (418)
T 2c81_A 311 DPVK-FG---GLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSI 386 (418)
T ss_dssp CGGG-TT---TCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEE
T ss_pred cccc-cc---ccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEE
Confidence 4210 00 01245788999999 999 7642 1 479
Q ss_pred EEECCCCC-hHHHHHHHHHHHHHHHHHH
Q 003466 782 YLMCGPCS-SPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 782 r~~ppl~~-t~edId~~~~~l~~~l~~l 808 (818)
|+.++..+ |++||++++++|+++++++
T Consensus 387 rl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 387 VIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp EEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred EecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999887653
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-12 Score=141.79 Aligned_cols=254 Identities=10% Similarity=0.083 Sum_probs=162.1
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|.++|+++.+. +.+++++||++|+..|++ .. +.| ..||+....|||.
T Consensus 52 ~~~~~~~~lr~~la~~~g~---~~~i~~~sGt~a~~~al~-~~-----~~g----------------d~Vi~~~~~y~~~ 106 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENA---QYGLAFSSGSATTATILQ-SL-----PQG----------------SHAVSIGDVYGGT 106 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHH-TS-----CSS----------------CEEEEESSCCHHH
T ss_pred CCChhHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHH-Hc-----CCC----------------CEEEEeCCCchHH
Confidence 3467788999999999874 478888999999999999 41 122 3788888888873
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. ..+... .. ..|.. .+.+| . .
T Consensus 107 ~-~~~~~~-~~------------~~G~~-------------v~~v~-----------------~-----------~---- 127 (393)
T 1n8p_A 107 H-RYFTKV-AN------------AHGVE-------------TSFTN-----------------D-----------L---- 127 (393)
T ss_dssp H-HHHHHT-ST------------TTCSC-------------CEEES-----------------S-----------H----
T ss_pred H-HHHHHH-HH------------HcCcE-------------EEEeC-----------------C-----------C----
Confidence 2 211100 00 00000 00001 0 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc----CCcEEEeecccCcccCCccchh
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR----KIPVIFDEVFTGFWRLGVETTA 675 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~----gilLI~DEV~TGfGRtG~~~a~ 675 (818)
. +.+++.+. .++++|++|.+ ++..|.+.+ +++|.++|++| |+++|+||+|+++.+ +...
T Consensus 128 d-~~l~~~i~--------~~t~lv~~~~~-~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~~~-~~~~-- 190 (393)
T 1n8p_A 128 L-NDLPQLIK--------ENTKLVWIETP-TNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSPYI-SNPL-- 190 (393)
T ss_dssp H-HHHHHHSC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CCGG--
T ss_pred h-HHHHHhcc--------cCceEEEEECC-CCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccccc-CCHH--
Confidence 1 34555553 36789999997 899998885 99999999999 999999999986644 2322
Q ss_pred cccCCCCcEE--EecccccCCcccc-ceeecc-hHHHhhccCC-----h---H---------------HHH------HHH
Q 003466 676 DLLGCVPDIA--CYGKLLTGGVIPL-AATLAT-NAVFDSFVGD-----S---K---------------LWD------LEL 722 (818)
Q Consensus 676 e~~gv~PDiv--tlgKgLggGy~Pl-sAvl~~-~~i~~~l~~~-----~---~---------------~~~------~~l 722 (818)
.+| +|++ +++|.+|+..+++ |+++++ +++++.+... . . .++ ..+
T Consensus 191 -~~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 267 (393)
T 1n8p_A 191 -NFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKI 267 (393)
T ss_dssp -GGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred -HcC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 223 7877 7999999643678 777775 7777655321 0 0 000 123
Q ss_pred HHHHHcCCC-eeEE------------------Ee-e-eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe------
Q 003466 723 IQQISSHRT-VQRV------------------VA-L-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR------ 775 (818)
Q Consensus 723 ~~~l~~~~~-v~~v------------------rg-~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~------ 775 (818)
.+.+++++. +..+ ++ . |.++.|++.... ..+..+...|...|+.+.
T Consensus 268 ~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-------~~~~~~l~~l~~~~~~~s~G~~~s 340 (393)
T 1n8p_A 268 AEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-------EAASKFASSTRLFTLAESLGGIES 340 (393)
T ss_dssp HHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-------HHHHHHHHHCSSSEECSCCCCSSC
T ss_pred HHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH-------HHHHHHHhhCCcceECCCCCCCcc
Confidence 344555665 5443 23 5 889999986321 335556665543332211
Q ss_pred ----e---------------c---CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 776 ----P---------------L---GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 776 ----p---------------~---g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
| . .+.||++.....++++|+.+.++|+++
T Consensus 341 ~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 341 LLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp EEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 1 1 268999999999999999988888654
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=146.94 Aligned_cols=251 Identities=12% Similarity=0.085 Sum_probs=158.8
Q ss_pred CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.++...+++++|+++.+. +.++++++|++|+..+++++ +.| ..||+.+..||+..
T Consensus 131 g~~~~~~l~~~la~~~g~---~~~i~~~sGt~al~~~l~~~------~~G----------------d~Vi~~~~~y~~~~ 185 (464)
T 1ibj_A 131 GNPTRDALESLLAKLDKA---DRAFCFTSGMAALSAVTHLI------KNG----------------EEIVAGDDVYGGSD 185 (464)
T ss_dssp CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTS------CTT----------------CEEEEESSCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHh------CCC----------------CEEEEECCCchhHH
Confidence 456788999999998873 58888999999998777632 122 37888888888742
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
..+... .. . .| ...+.+| .+|
T Consensus 186 -~~~~~~-~~---~---------~G-------------~~v~~v~--------------~~d------------------ 206 (464)
T 1ibj_A 186 -RLLSQV-VP---R---------SG-------------VVVKRVN--------------TTK------------------ 206 (464)
T ss_dssp -HHHHHT-SG---G---------GT-------------CEEEEEC--------------TTS------------------
T ss_pred -HHHHHH-HH---H---------cC-------------CEEEEeC--------------CCC------------------
Confidence 111000 00 0 00 0001111 112
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
.+.+++.+. .++++|++|.. ++..|.+.+ +++|.++|++||+++|+||+++. |..+....+
T Consensus 207 ~~~l~~~i~--------~~tk~v~l~~p-~NptG~v~~----l~~i~~la~~~gi~livDea~~~----g~~~~~~~~-- 267 (464)
T 1ibj_A 207 LDEVAAAIG--------PQTKLVWLESP-TNPRQQISD----IRKISEMAHAQGALVLVDNSIMS----PVLSRPLEL-- 267 (464)
T ss_dssp HHHHHHHCC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC----TTTCCGGGT--
T ss_pred HHHHHHHhc--------cCceEEEEeCC-CCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc----cccCChhhc--
Confidence 255666663 36889999997 888888885 99999999999999999999952 222111113
Q ss_pred CCcEE--EecccccC--Cccccceeecch-HHHhhccC------Ch--H--------H-------HH------HHHHHHH
Q 003466 681 VPDIA--CYGKLLTG--GVIPLAATLATN-AVFDSFVG------DS--K--------L-------WD------LELIQQI 726 (818)
Q Consensus 681 ~PDiv--tlgKgLgg--Gy~PlsAvl~~~-~i~~~l~~------~~--~--------~-------~~------~~l~~~l 726 (818)
.+|++ +++|.++| | +++|++++++ ++++.+.. .. . . ++ ..+.+.+
T Consensus 268 ~~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l 346 (464)
T 1ibj_A 268 GADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYL 346 (464)
T ss_dssp TCSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCcccccCCCC-CcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH
Confidence 46877 59999987 6 6889999984 77654421 10 0 0 11 1122233
Q ss_pred HcCCCee------------------EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----------
Q 003466 727 SSHRTVQ------------------RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------- 777 (818)
Q Consensus 727 ~~~~~v~------------------~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----------- 777 (818)
++++.+. +.++.|.++.+++... ..+..+.+.|...|+.++.+
T Consensus 347 ~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~--------~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~ 418 (464)
T 1ibj_A 347 SSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV--------ALSKHLVETTKYFSIAVSFGSVKSLISMPCF 418 (464)
T ss_dssp HTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH--------HHHHHHHHHCSSSEECSCCCSSSCEEECTTT
T ss_pred HhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH--------HHHHHHHHhcCcceEeecCCCCceeeecccc
Confidence 3332111 1235677888887321 23445777777667665432
Q ss_pred -----------------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 778 -----------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 778 -----------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+.+|+.+++ ||++++++.|++++++
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 419 MSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp TTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred cccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 2579999887 8999999999998764
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-11 Score=140.80 Aligned_cols=290 Identities=13% Similarity=0.066 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhh----hcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS----FDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 443 ~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t----~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
+...++.++|++++|.+ .+.++|+++|+|||..|++.+ |.++ +..|. . ...+..|++. ...|.
T Consensus 148 ~le~~~~~~la~l~g~~-~~~~~~t~ggtea~~~al~~a-r~~~~~~~~~~G~-~---------~~~~~~vl~s-~~~h~ 214 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWS-SGDGIFCPGGSISNMYAVNLA-RYQRYPDCKQRGL-R---------TLPPLALFTS-KECHY 214 (515)
T ss_dssp HHHHHHHHHHHHHHTCS-SCEEEEESSHHHHHHHHHHHH-HHHHCTTHHHHCG-G---------GSCCEEEEEE-TTSCT
T ss_pred HHHHHHHHHHHHHhCCC-CCCeEEcCCcHHHHHHHHHHH-HHHHhhHHhhcCc-c---------ccCCeEEEEC-CCccH
Confidence 34456677788888743 358999999999999999998 5432 11121 0 0012244444 44577
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
+...++...|... .....++....+ ..|
T Consensus 215 s~~~~~~~~g~g~-------------------------~~v~~v~~~~~~-----------~~d---------------- 242 (515)
T 2jis_A 215 SIQKGAAFLGLGT-------------------------DSVRVVKADERG-----------KMV---------------- 242 (515)
T ss_dssp HHHHHHHHTTSCG-------------------------GGEEEECBCTTS-----------CBC----------------
T ss_pred HHHHHHHHcCCCC-------------------------CcEEEEecCCCC-----------cCC----------------
Confidence 6655554443210 000111111000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.|++.|.+.. ..+.++++|++... .+..|.+.+ +++|.++|++||++||+|++++|+......+.+...
T Consensus 243 --~~~L~~~i~~~~--~~g~~~~~Vv~~~~-~n~tG~i~~----l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~ 313 (515)
T 2jis_A 243 --PEDLERQIGMAE--AEGAVPFLVSATSG-TTVLGAFDP----LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLD 313 (515)
T ss_dssp --HHHHHHHHHHHH--HTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGT
T ss_pred --HHHHHHHHHHHH--hCCCCcEEEEEeCC-CCCCCCccC----HHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcC
Confidence 145555554200 11336788888876 777888776 999999999999999999999888766655554455
Q ss_pred CC-CCcEEEe--cccccCCccccceeecchH--HHhh--------ccCC----------------------hH-------
Q 003466 679 GC-VPDIACY--GKLLTGGVIPLAATLATNA--VFDS--------FVGD----------------------SK------- 716 (818)
Q Consensus 679 gv-~PDivtl--gKgLggGy~PlsAvl~~~~--i~~~--------l~~~----------------------~~------- 716 (818)
|+ .+|++++ .|.++++ +++|+++++++ +++. +... ..
T Consensus 314 g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~ 392 (515)
T 2jis_A 314 GIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWK 392 (515)
T ss_dssp TGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHH
T ss_pred CCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHH
Confidence 66 7899988 9999877 47899998866 5432 1000 00
Q ss_pred ---------------HHHHHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCC-CchH-------HHHHHHHHHHhCCc
Q 003466 717 ---------------LWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAG-YGSL-------YAASLLKKLREDGV 772 (818)
Q Consensus 717 ---------------~~~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~-~~~~-------~a~~~~~~l~e~Gv 772 (818)
.+.+.+.+.+++.+.+.-+. .....+.+.+.+..-... .... .+..+.+.|.++|+
T Consensus 393 ~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~ 472 (515)
T 2jis_A 393 AQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGS 472 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTS
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 00112344555555432211 112334444432100000 0011 12347788899997
Q ss_pred eEee----cC--CEEEEEC-CCCChHHHHHHHHHHHHHHHHH
Q 003466 773 YMRP----LG--NVIYLMC-GPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 773 lv~p----~g--~~ir~~p-pl~~t~edId~~~~~l~~~l~~ 807 (818)
+... .+ +.+|+++ +..+|++||++++++|++++++
T Consensus 473 ~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 473 MMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp CEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 6532 22 5899999 8899999999999999887643
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-12 Score=143.04 Aligned_cols=217 Identities=13% Similarity=0.045 Sum_probs=127.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhcc-CCCC----CCcEE--EeCChhH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV-GKGW----ASRAY--FSDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~-~~~~----l~~v~--f~~SGse 472 (818)
.+||+.+|. +++...+|.+.++++++.....+. + ....-..+|.+.+++++ +... -+++. .+++|++
T Consensus 42 ~~i~l~~g~---~~d~~~~~~v~~a~~~a~~~~~~~-y--~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g 115 (409)
T 4eu1_A 42 RKVNLSIGV---YRDDADQPFVLECVKQATLGTNMD-Y--APVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG 115 (409)
T ss_dssp SCEECCCSS---CCCTTSCCCCCHHHHTCCCCSCCC-C--CCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred CceeeeeeE---EECCCCCEeecHHHHhcCcccccc-C--CCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence 577877633 333322788999998884322111 0 01111234555555543 2110 14564 4899999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
|++.+..++ +.+.+ .| .+|++.+.+|++.. ..+...|....
T Consensus 116 a~~~~~~~~-~~~~~-~g----------------d~Vlv~~p~y~~~~-~~~~~~g~~~~-------------------- 156 (409)
T 4eu1_A 116 ALRIGGDLL-NRFVA-NC----------------NRIYGPDVGYPNHE-SIFAKAGMELT-------------------- 156 (409)
T ss_dssp HHHHHHHHG-GGTSS-SC----------------CEEEEESSCCTHHH-HHHHHTTCEEE--------------------
T ss_pred HHHHHHHHH-HHhcC-CC----------------CEEEEeCCCcHhHH-HHHHHcCCeEE--------------------
Confidence 999988876 43322 12 37888888887643 22222222100
Q ss_pred ccccCcceeecC--cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 553 VFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 553 ~~~~~~~~~v~~--P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
.+++ ++.+ ..| .+.+++.+++ .+.+.+.+++... +
T Consensus 157 --------~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~i~~~~p-~ 193 (409)
T 4eu1_A 157 --------PYSYYDPATK-----------GLN------------------LAGMLECLDK-----APEGSVILVHACA-H 193 (409)
T ss_dssp --------EECCEETTTT-----------EEC------------------HHHHHHHHHH-----SCTTCEEEEESSS-C
T ss_pred --------EEEeecCcCC-----------cCc------------------HHHHHHHHHh-----CCCCcEEEEECCC-C
Confidence 0111 0000 011 2567777753 2334455554432 6
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchh-cccCCCCcEE---Eeccccc-CCcccccee-
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTA-DLLGCVPDIA---CYGKLLT-GGVIPLAAT- 701 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~-e~~gv~PDiv---tlgKgLg-gGy~PlsAv- 701 (818)
+..|.+. +.+.+++|.++|++||+++|+||++.+|+..+. .... ...+..++++ ++||.+| .| +++|++
T Consensus 194 NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~riG~~~ 271 (409)
T 4eu1_A 194 NPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYG-HRCGALH 271 (409)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGG-GCCEEEE
T ss_pred CCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCcc-CCceEEE
Confidence 7777666 788999999999999999999999999876662 2222 2235566654 8999998 67 699984
Q ss_pred --ecchH
Q 003466 702 --LATNA 706 (818)
Q Consensus 702 --l~~~~ 706 (818)
+++++
T Consensus 272 ~v~~~~~ 278 (409)
T 4eu1_A 272 ISTASAE 278 (409)
T ss_dssp EECSSHH
T ss_pred EEeCCHH
Confidence 66676
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-11 Score=135.09 Aligned_cols=253 Identities=11% Similarity=0.045 Sum_probs=157.9
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+|.++|+++.+. +..++++||++|+..+++ .. +.| ..||+.+..||+.
T Consensus 64 ~~~p~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~-l~-----~~g----------------d~Vl~~~~~y~~~ 118 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGA---KYCLAFASGLAATVTITH-LL-----KAG----------------DQIICMDDVYGGT 118 (403)
T ss_dssp --CHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHT-TS-----CTT----------------CEEEEESSCCHHH
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHH-Hh-----CCC----------------CEEEEeCCCcchH
Confidence 3467788999999999874 467778899999999888 41 122 3789999988874
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
......+. . + .| ...+.+| .+|
T Consensus 119 ~~~~~~~~--~--~----------~G-------------~~v~~v~--------------~~d----------------- 140 (403)
T 3cog_A 119 NRYFRQVA--S--E----------FG-------------LKISFVD--------------CSK----------------- 140 (403)
T ss_dssp HHHHHHTG--G--G----------GT-------------CEEEEEC--------------TTS-----------------
T ss_pred HHHHHHHH--H--H----------cC-------------CEEEEEC--------------CCC-----------------
Confidence 31110000 0 0 00 0000011 112
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC-CcEEEeecccCcccCCccchhccc
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g-ilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.+. .++.+|++|.. ++..|.+.+ +++|.++|++|| +++|+||+++++ ..+.. +
T Consensus 141 -~~~l~~~i~--------~~t~~v~~~~p-~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~-~~~~~-----~ 200 (403)
T 3cog_A 141 -IKLLEAAIT--------PETKLVWIETP-TNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSP-YFQRP-----L 200 (403)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCT-TTCCT-----T
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccc-ccCCc-----c
Confidence 145666663 36789999997 888898885 999999999999 999999999764 22221 2
Q ss_pred CCCCcEE--EecccccC-Cccccceeecc-hHHHhhccCC--------hH---------------HHH------HHHHHH
Q 003466 679 GCVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSFVGD--------SK---------------LWD------LELIQQ 725 (818)
Q Consensus 679 gv~PDiv--tlgKgLgg-Gy~PlsAvl~~-~~i~~~l~~~--------~~---------------~~~------~~l~~~ 725 (818)
+..+|++ +++|.++| |-..+|+++++ +++++.+... .. .++ ..+.+.
T Consensus 201 ~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~ 280 (403)
T 3cog_A 201 ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQF 280 (403)
T ss_dssp TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3457887 79999986 32467888885 6776654321 00 000 012233
Q ss_pred HHcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-----------
Q 003466 726 ISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----------- 776 (818)
Q Consensus 726 l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----------- 776 (818)
+++++.+.++ ++.|.++.+++... .....+.|.+.|++.+.
T Consensus 281 l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~----------~~~~~~~l~~~~i~~~~~s~G~~~sl~~ 350 (403)
T 3cog_A 281 LESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT----------LQHAEIFLKNLKLFTLAESLGGFESLAE 350 (403)
T ss_dssp HHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC----------HHHHHHHHHHCSSSEECSCCSSSSCEEE
T ss_pred HhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC----------HHHHHHHHHhCCcceEccCCCCcceeee
Confidence 3444433332 34588888887432 12234455567876542
Q ss_pred ------------------c--CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 777 ------------------L--GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 777 ------------------~--g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+ .+.+|+++.+..++++|+.+.++|++++
T Consensus 351 ~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 351 LPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp CTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred cccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 0 3689999999888888887777776543
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-11 Score=138.97 Aligned_cols=263 Identities=8% Similarity=-0.023 Sum_probs=160.5
Q ss_pred CHHHHHHHHHhhhhccc---ccCCCCCChhHHHHHHHHHhccCCCCCCcEEE---eCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAARFGH---VMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~---~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f---~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
+++|.+|+.++.....+ .....+......+++++++++++. +...+ ++||++|++.+++.. -+.|
T Consensus 37 ~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~---~~~~~~i~~~sGt~Ai~~al~al-----~~~G- 107 (431)
T 3ht4_A 37 QFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGA---EAGLVRPQIISGTHAISTALFGI-----LRPG- 107 (431)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTC---SEECCBTTSCSHHHHHHHHHHTT-----CCTT-
T ss_pred HHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCC---CcccccceeeCHHHHHHHHHHHh-----CCCC-
Confidence 78999999986433222 122233456788999999999874 34433 569999999999754 1222
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (818)
..||+.++..|+.+...+.+++. ++.. ....| ...+.+|...
T Consensus 108 ---------------d~Vl~~~~~~y~~~~~~~~l~g~--~~~~-----~~~~G-------------~~~~~v~~~~--- 149 (431)
T 3ht4_A 108 ---------------DELLYITGKPYDTLEEIVGVRGK--GVGS-----FKEYN-------------IGYNAVPLTE--- 149 (431)
T ss_dssp ---------------CEEEECSSSCCTTHHHHTTSSSC--SSSC-----SGGGT-------------CEEEECCBCT---
T ss_pred ---------------CEEEEeCCCCchhHHHHHhhccc--ccch-----HHHcC-------------CEEEEeCCCC---
Confidence 36888887888888877777654 1111 01001 1111111100
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~ 651 (818)
+. ..| .+.+++.+. .++.+|++|+..++..|.. .+...+++|.++|+
T Consensus 150 -----~~-~~d------------------~e~l~~~l~--------~~tk~V~i~~sp~np~~~~-~~~~~l~~i~~la~ 196 (431)
T 3ht4_A 150 -----GG-LVD------------------FEAVAAAIH--------SNTKMIGIQRSKGYATRPS-FTISQIKEMIAFVK 196 (431)
T ss_dssp -----TS-SBC------------------HHHHHHHCC--------TTEEEEEEECSCTTSSSCC-CCHHHHHHHHHHHH
T ss_pred -----CC-CcC------------------HHHHHhhcC--------CCCeEEEEECCCCCCCCCc-CCHHHHHHHHHHHH
Confidence 00 011 256666664 3688999995224444443 37888999999999
Q ss_pred h--cCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCc-cccceeecchHHHhhccC------C-----h--
Q 003466 652 N--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV-IPLAATLATNAVFDSFVG------D-----S-- 715 (818)
Q Consensus 652 ~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy-~PlsAvl~~~~i~~~l~~------~-----~-- 715 (818)
+ ||+++|+||+++.+...+... .+|+...+.+++|.||||+ .+.|++++++++++.+.. . .
T Consensus 197 ~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~ 273 (431)
T 3ht4_A 197 EIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASL 273 (431)
T ss_dssp HHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCC
T ss_pred hhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccH
Confidence 9 999999999998775444422 2344333447999999865 456778888888776532 0 0
Q ss_pred ---H-----------HHH------HHHHHHHHcCCC-e---eEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCC
Q 003466 716 ---K-----------LWD------LELIQQISSHRT-V---QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG 771 (818)
Q Consensus 716 ---~-----------~~~------~~l~~~l~~~~~-v---~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~G 771 (818)
. ... ..+.+.+++++. + ...++.++++++.+.+. +.+..+++.|.+..
T Consensus 274 ~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~--------~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 274 YSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDK--------DRMIAFCQAIQYAS 345 (431)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCH--------HHHHHHHHHHHHTS
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCH--------HHHHHHHHHHHhcC
Confidence 0 000 112333444432 1 22356677888888643 56788999998863
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-11 Score=129.84 Aligned_cols=190 Identities=9% Similarity=0.015 Sum_probs=120.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|++.+|+.++++...+ ...+...++.++|+++++. +.++|++||++|++.|++.+ +++. ..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~al~~~-~~~~-~~~~------ 77 (390)
T 3b8x_A 14 DDLEYKAIQSVLDSKMF-----TMGEYVKQYETQFAKTFGS---KYAVMVSSGSTANLLMIAAL-FFTK-KPRL------ 77 (390)
T ss_dssp CHHHHHHHHHHHHHTCC-----SSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TSSS-SCSC------
T ss_pred CHHHHHHHHHHHHcCCC-----CCChHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHH-Hhhh-hcCC------
Confidence 68999999999876432 2367788999999999974 57899999999999999976 3211 0010
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (818)
....+||+...+||+.... +...|... ..++....
T Consensus 78 ------~~g~~Vi~~~~~~~~~~~~-~~~~g~~~----------------------------~~~~~~~~---------- 112 (390)
T 3b8x_A 78 ------KKGDEIIVPAVSWSTTYYP-LQQYGLRV----------------------------KFVDIDIN---------- 112 (390)
T ss_dssp ------CTTCEEEEESSSCHHHHHH-HHHTTCEE----------------------------EEECBCTT----------
T ss_pred ------CCcCEEEECCCCcHHHHHH-HHHcCCEE----------------------------EEEecCcc----------
Confidence 1124789999999886543 22222110 00000000
Q ss_pred cccc-CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 578 ITFC-SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 578 ~~~n-d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
+++ | .+.+++.+. .++++|++... . |.. ..+++|.++|++||++
T Consensus 113 -~~~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~---g~~----~~~~~i~~l~~~~~~~ 157 (390)
T 3b8x_A 113 -TLNID------------------IESLKEAVT--------DSTKAILTVNL-L---GNP----NNFDEINKIIGGRDII 157 (390)
T ss_dssp -TCSBC------------------HHHHHHHCC--------TTEEEEEEECG-G---GCC----CCHHHHHHHHTTSCCE
T ss_pred -ccCcC------------------HHHHHHHhC--------cCCeEEEEECC-c---cCh----hhHHHHHHHHHHcCCE
Confidence 000 1 255666664 25667776432 2 222 3499999999999999
Q ss_pred EEEeeccc-CcccCCccchhcccCCCCcEEEecccccCCcc--ccceeecch-HHH
Q 003466 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYGKLLTGGVI--PLAATLATN-AVF 708 (818)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlgKgLggGy~--PlsAvl~~~-~i~ 708 (818)
+|+||+|+ |.. +....+|+.+|+.+++|..+.++. ..|++++++ ++.
T Consensus 158 li~D~a~~~g~~-----~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~ 208 (390)
T 3b8x_A 158 LLEDNCESMGAT-----FNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIY 208 (390)
T ss_dssp EEEECTTCTTCE-----ETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHH
T ss_pred EEEECcCcccCE-----ECCcccccccceEEEEccCCCCCccCCceEEEeCCHHHH
Confidence 99999996 332 223567888999998876554321 245666665 553
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.5e-12 Score=143.43 Aligned_cols=312 Identities=12% Similarity=0.039 Sum_probs=177.0
Q ss_pred CHHHHHHHHHhhhhccc---c--cCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAARFGH---V--MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~---~--~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
.+++++++.+++..... . ....+..+...++++.+.+..+.+ ..+.++++++|++|+..+++... ...|
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~~g- 182 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI----RNEK- 182 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC----CSTT-
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc----CCCC-
Confidence 77888888888877521 1 112233456667777776543311 13689999999999999999761 0122
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (818)
..|++.+.+|++.. .++...|.... .+++...-
T Consensus 183 ---------------d~Vlv~~p~y~~~~-~~~~~~g~~~~----------------------------~~~~~~~~--- 215 (500)
T 3tcm_A 183 ---------------DGILVPIPQYPLYS-ASIALHGGALV----------------------------PYYLNEST--- 215 (500)
T ss_dssp ---------------EEEEEEESCCTHHH-HHHHHTTCEEE----------------------------EEECBTTT---
T ss_pred ---------------CEEEEeCCCcHhHH-HHHHHcCCEEE----------------------------EEeccccc---
Confidence 36888888887644 33333332110 01100000
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~ 651 (818)
+ -..| .+.|++.|.... ....++.+|++... ++..|.+. +.+.+++|.++|+
T Consensus 216 -----~-~~~d------------------~~~l~~~l~~~~--~~~~~~k~ivl~~p-~NPtG~~~-s~~~l~~i~~la~ 267 (500)
T 3tcm_A 216 -----G-WGLE------------------TSDVKKQLEDAR--SRGINVRALVVINP-GNPTGQVL-AEENQYDIVKFCK 267 (500)
T ss_dssp -----T-SBCC------------------HHHHHHHHHHHH--HTTCEEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHH
T ss_pred -----C-CCCC------------------HHHHHHHHHHHH--hcCCCceEEEEECC-CCCCcccC-CHHHHHHHHHHHH
Confidence 0 0111 145555554210 11235666666543 67777766 7888999999999
Q ss_pred hcCCcEEEeecccCcccCC--ccchh----cccCC-CC--c-EE--Eecccc-c-CCccccceeec---chHHHhhccCC
Q 003466 652 NRKIPVIFDEVFTGFWRLG--VETTA----DLLGC-VP--D-IA--CYGKLL-T-GGVIPLAATLA---TNAVFDSFVGD 714 (818)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG--~~~a~----e~~gv-~P--D-iv--tlgKgL-g-gGy~PlsAvl~---~~~i~~~l~~~ 714 (818)
+||+++|+||++.++...+ .+..+ ..++. .. + ++ ++||++ | .| +.+|++++ ++++++.+...
T Consensus 268 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~ 346 (500)
T 3tcm_A 268 NEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIYKI 346 (500)
T ss_dssp HHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHHH
T ss_pred HcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHHH
Confidence 9999999999998753322 12111 12332 22 2 33 789999 4 36 68888887 78776654211
Q ss_pred hH---------------H-------------HHH--------------HHHHHHHcCCCeeEEEeeeeEEEE-EEecCcc
Q 003466 715 SK---------------L-------------WDL--------------ELIQQISSHRTVQRVVALGTLCAI-ELQAAGC 751 (818)
Q Consensus 715 ~~---------------~-------------~~~--------------~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~~~ 751 (818)
.. . +.+ .+.+.+++++.+.-+...|.++.+ .+..+..
T Consensus 347 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~ 426 (500)
T 3tcm_A 347 ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQK 426 (500)
T ss_dssp HHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHH
T ss_pred HhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchh
Confidence 00 1 111 123345555555444444444433 2221100
Q ss_pred cC----CCchHHHHHH-HHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhH
Q 003466 752 NA----GYGSLYAASL-LKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 812 (818)
Q Consensus 752 ~~----~~~~~~a~~~-~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~ 812 (818)
.. .........+ .+.|.++||++.|+ .+.+|++.. +++++|++++++|.++++++.+.+
T Consensus 427 ~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~~~ 498 (500)
T 3tcm_A 427 AIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHEAFMSEY 498 (500)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0000001223 34556789999973 146898887 889999999999999998876543
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.7e-12 Score=141.90 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchhccc
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~e~~ 678 (818)
+.+++.+.. .+.+...+++... ++..|.+. +.+.+++|.++|++||+++|+||++.+|+..+. .+....+
T Consensus 190 e~l~~~l~~-----~~~~~~~v~~~~p-~NPtG~~~-~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 262 (448)
T 3meb_A 190 SNTKKDIQS-----APEKSIFLFHACA-HNPSGIDF-TEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMF 262 (448)
T ss_dssp HHHHHHHHH-----SCTTCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHH
T ss_pred HHHHHHHHh-----CCCCcEEEEeCCC-CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHH
Confidence 556667763 2334455555443 77778765 788999999999999999999999999976652 2222222
Q ss_pred -CCCCc---EEEeccccc-CCcccccee--ec
Q 003466 679 -GCVPD---IACYGKLLT-GGVIPLAAT--LA 703 (818)
Q Consensus 679 -gv~PD---ivtlgKgLg-gGy~PlsAv--l~ 703 (818)
+..++ +.++||.+| .| +++|++ ++
T Consensus 263 ~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~v~ 293 (448)
T 3meb_A 263 VDAGVEVLVAQSFSKNFGLYG-ERIGCLHVVH 293 (448)
T ss_dssp HHTTCCEEEEEECTTTSCCGG-GCCEEEEEEC
T ss_pred hhcCCcEEEEecccccCCCcc-ccceeeeeee
Confidence 33455 457999998 57 688887 55
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-12 Score=139.65 Aligned_cols=275 Identities=9% Similarity=-0.009 Sum_probs=158.8
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
++++++|+. .++ .......++++.++++++...-+.+++++||++|++.+++.+ .|
T Consensus 43 ~~~v~~a~~----~~~------~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~-------~g------- 98 (374)
T 2aeu_A 43 DEKDKALLN----TYI------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-------KP------- 98 (374)
T ss_dssp CHHHHHHHT----STT------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-------CC-------
T ss_pred CHHHHHHHH----Hhc------CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-------CC-------
Confidence 577777775 221 112344677777777776310157899999999999999843 23
Q ss_pred CCccccccceEEEEEcCCCCCCccc--cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLG--AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~--als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
.+||+.+.+|||.... .+...|.. .+.
T Consensus 99 ---------d~Vl~~~~~y~~~~~~~~~~~~~g~~------------------------------~~~------------ 127 (374)
T 2aeu_A 99 ---------KKVIHYLPELPGHPSIERSCKIVNAK------------------------------YFE------------ 127 (374)
T ss_dssp ---------SEEEEECSSSSCCTHHHHHHHHTTCE------------------------------EEE------------
T ss_pred ---------CEEEEecCCCCccHHHHHHHHHcCcE------------------------------EEE------------
Confidence 2799999999984311 11111100 000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
.+| .+.+++. ..++++ |+++.. ++.+|. +...+++|.++|++||
T Consensus 128 ----v~d------------------~~~l~~~---------~~~~~~~v~~~~p-~nptG~---~~~~l~~i~~l~~~~~ 172 (374)
T 2aeu_A 128 ----SDK------------------VGEILNK---------IDKDTLVIITGST-MDLKVI---ELENFKKVINTAKNKE 172 (374)
T ss_dssp ----ESC------------------HHHHHTT---------CCTTEEEEEECBC-TTSCBC---CHHHHHHHHHHHHHHT
T ss_pred ----eCC------------------HHHHHhc---------CCCccEEEEEccC-CCCCCC---CcccHHHHHHHHHHcC
Confidence 011 1334332 235678 999986 788775 5677999999999999
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccCC--------hH--------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD--------SK-------- 716 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~--------~~-------- 716 (818)
+++|+||++.-+ ..|...........+|++ +++|.|+| ..+|.+++++++++.+... ..
T Consensus 173 ~~li~De~~~~~-~~~~~~~~~~~~~~~di~~~S~sK~l~g--~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 249 (374)
T 2aeu_A 173 AIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG--PRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYR 249 (374)
T ss_dssp CCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS--CSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHH
T ss_pred CEEEEECCcccc-cccccccCCccccCCcEEEecCcccccC--cceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHH
Confidence 999999988432 211111000112346887 49999886 4788899999888754320 00
Q ss_pred HH-------HHH-------H----HHHHHc-CCC------ee-EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHH-Hh
Q 003466 717 LW-------DLE-------L----IQQISS-HRT------VQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKL-RE 769 (818)
Q Consensus 717 ~~-------~~~-------l----~~~l~~-~~~------v~-~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l-~e 769 (818)
.+ .++ + .+.+.+ ++. +. .....|.++...-.... ........++..+ .+
T Consensus 250 al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~ll~~ 325 (374)
T 2aeu_A 250 ALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDT----INIKKLIEIGFNLLKN 325 (374)
T ss_dssp HHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccccc----ccccchHHHHHHHHHh
Confidence 00 001 1 122211 121 11 23455666544211110 0000122355444 46
Q ss_pred CCceEeec------CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHH
Q 003466 770 DGVYMRPL------GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 770 ~Gvlv~p~------g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~ 809 (818)
+||++.|+ .+.+|+.++. ..+++++++++++|+++++++.
T Consensus 326 ~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 326 YGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp HCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 89999863 2479999864 3344468999999999887764
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.8e-11 Score=134.83 Aligned_cols=198 Identities=11% Similarity=0.066 Sum_probs=121.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (818)
+.|++.|.+.. ..+.++++|++.-. ....|.+.+ +++|.++|++||+++++|+++.|+......+.....|+
T Consensus 230 ~~L~~~i~~~~--~~g~~~~~V~~~~~-~~~tG~i~~----l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~ 302 (504)
T 2okj_A 230 ADFEAKILEAK--QKGYVPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 302 (504)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEECBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG
T ss_pred HHHHHHHHHHH--HCCCCceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcc
Confidence 45555554200 11235778887664 666787765 99999999999999999999987754333332333455
Q ss_pred CCcEEEec--ccccCCccccceeecch-HHHhh--------ccC-C---------------------hH-------H---
Q 003466 681 VPDIACYG--KLLTGGVIPLAATLATN-AVFDS--------FVG-D---------------------SK-------L--- 717 (818)
Q Consensus 681 ~PDivtlg--KgLggGy~PlsAvl~~~-~i~~~--------l~~-~---------------------~~-------~--- 717 (818)
.+|+++++ |.++++ +++|++++++ ++++. +.. . .. .
T Consensus 303 ~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~ 381 (504)
T 2okj_A 303 RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT 381 (504)
T ss_dssp GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHH
T ss_pred cCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhH
Confidence 68999886 998877 5899999876 35431 110 0 00 0
Q ss_pred ------------HHHHHHHHHHcCCCeeEEE---eeeeEEEEEEecCcccC-CCc-------hHHHHHHHHHHHhCCce-
Q 003466 718 ------------WDLELIQQISSHRTVQRVV---ALGTLCAIELQAAGCNA-GYG-------SLYAASLLKKLREDGVY- 773 (818)
Q Consensus 718 ------------~~~~l~~~l~~~~~v~~vr---g~Gl~~~iel~~~~~~~-~~~-------~~~a~~~~~~l~e~Gvl- 773 (818)
+.+.+.+.+++.+.+.-+. ..+.++.+.+.+..... ... ...+..+.+.|.++|++
T Consensus 382 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~ 461 (504)
T 2okj_A 382 VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTM 461 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEE
Confidence 0112334455555443221 23445555543221000 000 01245688899999964
Q ss_pred Eee---cC--CEEEEECC-CCChHHHHHHHHHHHHHHHHH
Q 003466 774 MRP---LG--NVIYLMCG-PCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 774 v~p---~g--~~ir~~pp-l~~t~edId~~~~~l~~~l~~ 807 (818)
+.+ .+ +.+|+++. ..+|++||++++++|++++++
T Consensus 462 ~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 462 VGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 432 23 47999985 788999999999999887654
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=139.46 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=106.8
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+|+++|+++.+. +.+++++||++|+..|++.+. +.| ..||+.+..|++.
T Consensus 79 ~~~p~~~~le~~lA~l~g~---~~~v~~~sG~~Ai~~al~al~-----~~G----------------d~Vi~~~~~y~~~ 134 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLTGA---LGVLALGSGMAAISTAILTLA-----RAG----------------DSVVTTDRLFGHT 134 (430)
T ss_dssp -CCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHC-----CTT----------------CEEEEETTCCHHH
T ss_pred CCCHHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHHh-----CCC----------------CEEEEcCCCchhH
Confidence 4578889999999999874 568888999999999998661 222 3688888888764
Q ss_pred cccc---ccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhH
Q 003466 520 TLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (818)
Q Consensus 520 t~~a---ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~ 596 (818)
.... +...|.. .+.+| .+|
T Consensus 135 ~~~~~~~~~~~G~~------------------------------~~~v~--------------~~d-------------- 156 (430)
T 3ri6_A 135 LSLFQKTLPSFGIE------------------------------VRFVD--------------VMD-------------- 156 (430)
T ss_dssp HHHHHTHHHHTTCE------------------------------EEEEC--------------TTC--------------
T ss_pred HHHHHHHHHHcCCE------------------------------EEEeC--------------CCC--------------
Confidence 3211 1111100 00011 112
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhc
Q 003466 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 597 ~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
.+.+++.+. .++++|++|.. ++..|.+.+ +++|.++|++||+++|+||+++ +|..+...
T Consensus 157 ----~~~l~~ai~--------~~t~~v~~e~p-~NptG~~~d----l~~i~~la~~~g~~livD~a~~----~~~~~~~~ 215 (430)
T 3ri6_A 157 ----SLAVEHACD--------ETTKLLFLETI-SNPQLQVAD----LEALSKVVHAKGIPLVVDTTMT----PPYLLEAK 215 (430)
T ss_dssp ----HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTTTCCEEEECTTS----CTTTCCGG
T ss_pred ----HHHHHHhhC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc----ccccCChH
Confidence 255666664 36889999987 888888875 8999999999999999999995 23333334
Q ss_pred ccCCCCcEEEecccccCCccccceeec
Q 003466 677 LLGCVPDIACYGKLLTGGVIPLAATLA 703 (818)
Q Consensus 677 ~~gv~PDivtlgKgLggGy~PlsAvl~ 703 (818)
.+|....+.+++|.++|.-..+|.+++
T Consensus 216 ~~g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 216 RLGVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp GGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred HcCCEEEEECCcccccCCCCceEEEEE
Confidence 456544445788999873133444444
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-10 Score=130.19 Aligned_cols=310 Identities=11% Similarity=-0.007 Sum_probs=174.9
Q ss_pred CHHHHHHHHHhhhhccc-----ccCCCCCChhHHHHHHHHHhccC-CC-CCCcEEEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 418 QIELARDMGYTAARFGH-----VMFPENVYEPALECAELLLQGVG-KG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~-----~~~~~~~~~~~~eLae~L~~~~~-~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
..++.+++.+++++.+. +....+..+...++++.+.+..+ -+ ..+.+++++++++|+..++++. ...|
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l-----~~~g 177 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL-----VSGG 177 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH-----CCCC
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH-----cCCC
Confidence 56677888887776431 11223344677788888876543 11 1368999999999999999976 1111
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
. ..+..|++..-+|.... .++...|... +.+|.
T Consensus 178 d------------~~~d~Vlv~~p~y~~~~-~~~~~~g~~~------------------------------v~~~~---- 210 (498)
T 3ihj_A 178 G------------KSRTGVMIPIPQYPLYS-AVISELDAIQ------------------------------VNYYL---- 210 (498)
T ss_dssp G------------GGSEEEEEEESCCTHHH-HHHHHTTCEE------------------------------EEEEC----
T ss_pred C------------CCCCEEEEeCCCchhHH-HHHHHcCCEE------------------------------EEeec----
Confidence 1 11246777777776543 3333333211 00110
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
+. +..|. -| .+.|++.+... ....++.+|++... ++..|.+. +.+-+++|.++|
T Consensus 211 ----------~~-~~~~~--~d--------~~~le~~l~~~---~~~~~~k~i~l~np-~NPTG~v~-s~~~l~~i~~la 264 (498)
T 3ihj_A 211 ----------DE-ENCWA--LN--------VNELRRAVQEA---KDHCDPKVLCIINP-GNPTGQVQ-SRKCIEDVIHFA 264 (498)
T ss_dssp ----------BG-GGTTB--CC--------HHHHHHHHHHH---TTTSEEEEEEEESS-CTTTCCCC-CHHHHHHHHHHH
T ss_pred ----------cc-cccCC--CC--------HHHHHHHHHhh---hccCCCeEEEEECC-CCCCCCcC-CHHHHHHHHHHH
Confidence 00 00000 01 25667777631 11125666666653 77788766 788899999999
Q ss_pred HhcCCcEEEeecccCcccCC--ccchhccc--CCC------Cc---EEEeccccc--CCccccceee---cchHHHhhcc
Q 003466 651 QNRKIPVIFDEVFTGFWRLG--VETTADLL--GCV------PD---IACYGKLLT--GGVIPLAATL---ATNAVFDSFV 712 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG--~~~a~e~~--gv~------PD---ivtlgKgLg--gGy~PlsAvl---~~~~i~~~l~ 712 (818)
++||+++|+||++..+...+ ........ +.. .. +.++||++. .| +.+|.++ .++++++.+.
T Consensus 265 ~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~ 343 (498)
T 3ihj_A 265 WEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG-YRGGYMEVINLHPEIKGQLV 343 (498)
T ss_dssp HHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS-SCCEEEEEESCCHHHHHHHH
T ss_pred HHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc-cceEEEEEecCCHHHHHHHH
Confidence 99999999999997653222 12111111 111 11 237899994 57 6888887 5787776542
Q ss_pred CChH---------------H-------------HH--------------HHHHHHHHcCCCeeEEEeeeeEEEE-EEecC
Q 003466 713 GDSK---------------L-------------WD--------------LELIQQISSHRTVQRVVALGTLCAI-ELQAA 749 (818)
Q Consensus 713 ~~~~---------------~-------------~~--------------~~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~ 749 (818)
.... . +. +.+.+.+++++.+.-+...|.++.+ .+..+
T Consensus 344 ~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p 423 (498)
T 3ihj_A 344 KLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIP 423 (498)
T ss_dssp HHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCC
T ss_pred HHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCc
Confidence 1100 0 00 1123345556555444444444433 34211
Q ss_pred ccc------CCCchHHHHH-HHHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 750 GCN------AGYGSLYAAS-LLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 750 ~~~------~~~~~~~a~~-~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
... ...+ .... +.+.|.++||++.|+ .+.+|++. .++++++++++++|.++++++.+
T Consensus 424 ~~~~~~~~~~g~~--~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 424 AKAVEAAQAHQMA--PDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp HHHHHHHHHTTSC--HHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhcCCC--cHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 1112 244556789999872 14788887 37899999999999999988764
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=123.23 Aligned_cols=302 Identities=10% Similarity=-0.057 Sum_probs=172.9
Q ss_pred CHHHHHHHHHhhhhccccc-CCCCCChhHHHHHHHHHhccCCCCCC----cEEEeCChhHHHHHHHHHHHHHhhh---cc
Q 003466 418 QIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKGWAS----RAYFSDNGSTAIEIALKMAFRKFSF---DH 489 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~-~~~~~~~~~~eLae~L~~~~~~~~l~----~v~f~~SGseA~e~ALklA~r~~t~---~~ 489 (818)
+|.+.+++.+.++...... ......+...++.++|+++++.+.-. .++++++|+||+..|+..++..+.. ..
T Consensus 55 ~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~ 134 (452)
T 2dgk_A 55 DENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAA 134 (452)
T ss_dssp CHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999998886532211 00112344566777778888743111 3899999999999999987322211 01
Q ss_pred cccccccCCCccccc-cceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc-h
Q 003466 490 EVLVDFLGKDTTEKC-IELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-W 567 (818)
Q Consensus 490 G~~~~~~~~~~~~~~-~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~-~ 567 (818)
|. + .+..||+.+ +|.+...++...|.... .++... .
T Consensus 135 G~------------~~~~~~vi~~~--~h~~~~~~~~~~G~~v~----------------------------~v~~~~~~ 172 (452)
T 2dgk_A 135 GK------------PTDKPNLVCGP--VQICWHKFARYWDVELR----------------------------EIPMRPGQ 172 (452)
T ss_dssp TC------------CCSCCEEEESS--CCHHHHHHHHHTTCEEE----------------------------ECCCBTTB
T ss_pred CC------------CCCCcEEEECC--CcHHHHHHHHHcCceEE----------------------------EEecCCCC
Confidence 21 1 123566554 77665544444332210 011000 0
Q ss_pred hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHH
Q 003466 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (818)
Q Consensus 568 ~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~Lr 647 (818)
+ ..| .+.|++.|. +++.+|++.-. ....|.+.+ +++|.
T Consensus 173 ~-----------~~d------------------~~~l~~~i~--------~~t~~v~~~~~-~n~tG~~~~----l~~I~ 210 (452)
T 2dgk_A 173 L-----------FMD------------------PKRMIEACD--------ENTIGVVPTFG-VTYTGNYEF----PQPLH 210 (452)
T ss_dssp C-----------SCC------------------HHHHHHHCC--------TTEEEEECBBS-CTTTCBBCC----HHHHH
T ss_pred C-----------eEC------------------HHHHHHHHh--------hCCEEEEEEcC-CcCCcccCC----HHHHH
Confidence 0 011 256777764 23455554432 456777765 99999
Q ss_pred HHHHhc------CCcEEEeecccCccc---CCcc-chhcccCCCCcEEEec--ccccCCccccceeecchH-HH-hhc--
Q 003466 648 KECQNR------KIPVIFDEVFTGFWR---LGVE-TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA-VF-DSF-- 711 (818)
Q Consensus 648 eLc~~~------gilLI~DEV~TGfGR---tG~~-~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~-i~-~~l-- 711 (818)
++|++| |+++++|+++.|+.. .++. +..+. -..|.++++ |.+.+| ..+|+++++++ +. +.+
T Consensus 211 ~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~~~~-~~~G~~~~~~~~~~~~~~~~ 287 (452)
T 2dgk_A 211 DALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFGLAP-LGCGWVIWRDEEALPQELVF 287 (452)
T ss_dssp HHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCE
T ss_pred HHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECcccccCCC-CCeEEEEEcCHHHHHHHhcc
Confidence 999996 999999999977522 1110 11111 135766654 866555 46788888643 32 221
Q ss_pred -----c--------CCh----H---------H---------------HHHHHHHHHHcCCCeeEEE-----eeeeEEEEE
Q 003466 712 -----V--------GDS----K---------L---------------WDLELIQQISSHRTVQRVV-----ALGTLCAIE 745 (818)
Q Consensus 712 -----~--------~~~----~---------~---------------~~~~l~~~l~~~~~v~~vr-----g~Gl~~~ie 745 (818)
. ... . . ..+.+.+.+++.+.+.-+. ....++.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~ 367 (452)
T 2dgk_A 288 NVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFK 367 (452)
T ss_dssp EECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEE
T ss_pred CccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEE
Confidence 0 000 1 0 0112344556666543332 234566666
Q ss_pred EecCcccCCCchHHHHHHHHHHHhCCceEee----c----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
+.... ... .....+.+.|.++|++++. . ...+|++....+|++|+|++++.|+++++++.+
T Consensus 368 ~~~~~-~~~---~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 368 LKDGE-DPG---YTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp ECTTC-CCS---CCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcc-ccc---CCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 64321 000 1135688899999997542 1 248999998888999999999999999887754
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-10 Score=125.47 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=126.2
Q ss_pred ceeecccccccccCCCC-CCHHHHHHHHHhhhhcccccC--CCCCChhHHHHHHHHHhccCCC-CCCcEEE--eCChhHH
Q 003466 400 QQFDACASWWTQGPDAT-LQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-WASRAYF--SDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~-~hp~V~eAi~~q~~~~~~~~~--~~~~~~~~~eLae~L~~~~~~~-~l~~v~f--~~SGseA 473 (818)
..||+..|......++- ..+++.+|+.+.++..+...+ ..+..+....+++.+....+.. ..+++++ +++|++|
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~a 108 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS 108 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHH
Confidence 35777665543333322 034677777766543221111 1122344555566555432200 0257777 9999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
+..+++.+ +.+. ..| ..|++.+.+|++.. ..+...|...
T Consensus 109 l~~~~~~l-~~~~-~~g----------------d~Vlv~~p~~~~~~-~~~~~~g~~~---------------------- 147 (401)
T 7aat_A 109 LRVGANFL-QRFF-KFS----------------RDVYLPKPSWGNHT-PIFRDAGLQL---------------------- 147 (401)
T ss_dssp HHHHHHHH-HHHC-TTC----------------CEEEEEESCCTTHH-HHHHHTTCEE----------------------
T ss_pred HHHHHHHH-HHhc-cCC----------------CEEEEcCCCchhHH-HHHHHcCCee----------------------
Confidence 99999877 3332 222 36888888887643 2222222110
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
+.+|. ++. ..+. -| .+.+++.+++ ...+..++++... ++..
T Consensus 148 --------~~~~~--------------~~~-~~~~--~d--------~~~l~~~l~~-----~~~~~~~v~i~~p-~NPt 188 (401)
T 7aat_A 148 --------QAYRY--------------YDP-KTCS--LD--------FTGAMEDISK-----IPEKSIILLHACA-HNPT 188 (401)
T ss_dssp --------EEEEC--------------EET-TTTE--EC--------HHHHHHHHTT-----SCTTCEEEEESSS-CTTT
T ss_pred --------Eeeee--------------ecc-ccCc--cC--------HHHHHHHHHh-----CCCCcEEEEeCCC-CCCC
Confidence 11110 000 0000 00 1345555652 1345677787775 8888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchhccc-CCCCcE---EEeccccc-CCccccceeec
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDI---ACYGKLLT-GGVIPLAATLA 703 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PDi---vtlgKgLg-gGy~PlsAvl~ 703 (818)
|.+. +.+.+++|.++|++||+++|.||++.+|+..+. .+....+ +..+++ .++||.+| .| +.+|++++
T Consensus 189 G~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~RiG~l~~ 264 (401)
T 7aat_A 189 GVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYG-ERAGAFTV 264 (401)
T ss_dssp CCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGG-GCEEEEEE
T ss_pred CCCC-CHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccccccc-CceEEEEE
Confidence 8765 889999999999999999999999988866543 2222221 233443 58999998 56 68888665
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-11 Score=137.62 Aligned_cols=170 Identities=10% Similarity=0.040 Sum_probs=105.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCCCCcEEEec--ccccCCc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYG--KLLTGGV 695 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlg--KgLggGy 695 (818)
++++|++.+- .. .|.+.+ +++|.++|++||+++|+||++++..+.+. .+....+| +|+++.| |.++|+
T Consensus 146 ~~~~v~~~~~-n~-~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g--~Di~~~S~~K~l~~~- 216 (446)
T 2x3l_A 146 GHKLVVLTYP-NY-YGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQ--ADYVVQSFHKTLPAL- 216 (446)
T ss_dssp -CCEEEEESS-CT-TSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGT--CSEEEECHHHHSSSC-
T ss_pred CceEEEEECC-CC-CeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcC--CCEEEECCccccccc-
Confidence 4566777662 33 677765 89999999999999999999976222222 22222233 7999877 988876
Q ss_pred cccceeecchHHHh--hcc-------CChH-------------HH--------HHH---HHHHHHcCCCeeEEEe-eeeE
Q 003466 696 IPLAATLATNAVFD--SFV-------GDSK-------------LW--------DLE---LIQQISSHRTVQRVVA-LGTL 741 (818)
Q Consensus 696 ~PlsAvl~~~~i~~--~l~-------~~~~-------------~~--------~~~---l~~~l~~~~~v~~vrg-~Gl~ 741 (818)
.++|++++++++++ .+. .... .+ .++ +.+.+.+.+ +.-+.. .+..
T Consensus 217 ~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~g-~~~~~~~~~~~ 295 (446)
T 2x3l_A 217 TMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENKG-FEMLQVDDPLK 295 (446)
T ss_dssp TTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT-CEEEECSSTTE
T ss_pred cccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHcC-CEECcCCCCeE
Confidence 57888988877643 111 1110 01 111 111222111 111110 1222
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEe-ecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~-p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.+.+.. ..+..+.+.|.++||.+. +..+.+|+.++..+|++|+ +++++|.++++++
T Consensus 296 l~i~~~~---------~~~~~l~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 296 LLIKYEG---------FTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp EEEECTT---------SCHHHHHHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred EEEEeCC---------cCHHHHHHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 3333321 124568889999999998 5557899999998999999 9999999887654
|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.2e-11 Score=131.07 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=112.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCcccccccch
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (818)
.+.+||+||++++|||++++.|.++|+ ++|++++++++.|+|.--..+
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~-----~~G~~v~~v~tgqtg~li~~~--------------------------- 216 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERAL-----EKGIKAGFLATGQTGILIGAD--------------------------- 216 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHH-----HTTCCEEEEECSHHHHHTTCS---------------------------
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHH-----hcCCeEEEEccCceeeeeccC---------------------------
Confidence 467999999999999999999999994 899999999987764210000
Q ss_pred hhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChhH
Q 003466 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (818)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (818)
..+......+++.+.+.+ +
T Consensus 217 -----------------------------------------------------~gv~~D~~~~~~~ag~~e-~------- 235 (350)
T 2g0t_A 217 -----------------------------------------------------AGYVIDAVPADFVSGVVE-K------- 235 (350)
T ss_dssp -----------------------------------------------------EECCGGGSBGGGHHHHHH-H-------
T ss_pred -----------------------------------------------------CCCCCCceecchhhHHHH-h-------
Confidence 011222455677777766 2
Q ss_pred HHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEc-CC-----------C-Ch
Q 003466 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD-GR-----------L-GG 263 (818)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~-~~-----------~-g~ 263 (818)
+...+. . +.+|++||||+||+..|... ...+.+.+-.+.+.+++.. .. + +.
T Consensus 236 ~i~~~~--~-------------~~~D~ivVEGqGgl~~P~~~-~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~ 299 (350)
T 2g0t_A 236 AVLKLE--K-------------TGKEIVFVEGQGALRHPAYG-QVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPD 299 (350)
T ss_dssp HHHHHH--H-------------TTCSEEEEECCSCTTCTTTH-HHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCC
T ss_pred hHHHhh--h-------------cCCCEEEEccCeeccccCch-HHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcC
Confidence 222222 2 24899999999999999752 2378899999999988865 21 5 89
Q ss_pred HHHHHHHHHHHHhCCCcEEEEE-EccCCCCCHHHHHHhhcCCCCEEe
Q 003466 264 ISGTISAYESLKLRGYDVVAVV-FEDHGLVNEVPLMSYLRNRVPVLV 309 (818)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi-~N~~~~~~~~~l~~~~~~~~pvlg 309 (818)
+++.+.+++.+. +.+|+||+ +|. ++.+ ++|+.-
T Consensus 300 i~~~i~~ie~l~--~~~V~gi~~lN~---------~~~~--glP~~d 333 (350)
T 2g0t_A 300 FEEERRLIETLS--NAKVIGGVSLNG---------GFET--DLPVYD 333 (350)
T ss_dssp HHHHHHHHHHSS--SCEEEEEECSSC---------CCCC--SSCEEC
T ss_pred HHHHHHHHHHhc--CCcEEEEEEcCc---------hHHH--CCCeee
Confidence 999999999987 89999999 996 3344 788765
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-10 Score=129.06 Aligned_cols=258 Identities=13% Similarity=0.087 Sum_probs=157.2
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|+++.+. +.+++++||++|+..|++... +.| ..||+.+..|||
T Consensus 78 r~~~p~~~~le~~lA~l~g~---~~~i~~ssGt~Ai~~al~~l~-----~~G----------------d~Vi~~~~~y~~ 133 (415)
T 2fq6_A 78 RRGTLTHFSLQQAMCELEGG---AGCVLFPCGAAAVANSILAFI-----EQG----------------DHVLMTNTAYEP 133 (415)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTC-----CTT----------------CEEEEETTSCHH
T ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEeCCCchH
Confidence 34578889999999999874 567778999999999988541 122 378888888876
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.. ..+.-. .. + .|. ....+| .+|+
T Consensus 134 ~~-~~~~~~-l~--~----------~G~-------------~v~~v~--------------~~d~--------------- 157 (415)
T 2fq6_A 134 SQ-DFCSKI-LS--K----------LGV-------------TTSWFD--------------PLIG--------------- 157 (415)
T ss_dssp HH-HHHHHT-GG--G----------GTC-------------EEEEEC--------------TTCG---------------
T ss_pred HH-HHHHHH-HH--H----------cCc-------------EEEEEC--------------CCCH---------------
Confidence 32 211100 00 0 000 000000 1221
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh--cCCcEEEeecccCcccCCccchhc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~--~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
+.+++.|. .++.+|++|.+ ++..|.+.+ +++|.++|++ ||+++|+||+|. .+..+...
T Consensus 158 ---~~le~ai~--------~~tklV~~e~~-~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a-~~~~~~p~--- 217 (415)
T 2fq6_A 158 ---ADIVKHLQ--------PNTKIVFLESP-GSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWA-AGVLFKAL--- 217 (415)
T ss_dssp ---GGGGGGCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSSCGG---
T ss_pred ---HHHHHhhc--------cCCcEEEEECC-CCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCc-ccccCCcc---
Confidence 33444443 35789999987 888888886 8999999999 999999999995 22222211
Q ss_pred ccCCCCcEE--EecccccCCc-cccceeecchHHHhhccC-----Ch---H---------------HHH------HHHHH
Q 003466 677 LLGCVPDIA--CYGKLLTGGV-IPLAATLATNAVFDSFVG-----DS---K---------------LWD------LELIQ 724 (818)
Q Consensus 677 ~~gv~PDiv--tlgKgLggGy-~PlsAvl~~~~i~~~l~~-----~~---~---------------~~~------~~l~~ 724 (818)
..-.|++ +++|.++++- ...|++++++++++.+.. +. . .++ ..+.+
T Consensus 218 --~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~ 295 (415)
T 2fq6_A 218 --DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAE 295 (415)
T ss_dssp --GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 2236887 6899998632 346788888776664431 10 0 000 12334
Q ss_pred HHHcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCce----------Ee-
Q 003466 725 QISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY----------MR- 775 (818)
Q Consensus 725 ~l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvl----------v~- 775 (818)
.+++++.+..+ ++.|.++.|++.... +...+..+...|...++. ..
T Consensus 296 ~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~-----~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~ 370 (415)
T 2fq6_A 296 WLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELANYLDNFSLFSMAYSWGGYESLILAN 370 (415)
T ss_dssp HHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHHHHTTCSSCEECSCCCSSSCEEEEE
T ss_pred HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC-----CHHHHHHHHHhCCcCeEeccCCCCceeEEec
Confidence 45666665544 246888999986410 012344444443211211 11
Q ss_pred -e--------------cCCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 776 -P--------------LGNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 776 -p--------------~g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
| .++.||++.-+..++++|+.+.++|++
T Consensus 371 ~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 371 QPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp CHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 1 137899999999999999998888764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-09 Score=123.56 Aligned_cols=303 Identities=12% Similarity=-0.044 Sum_probs=170.3
Q ss_pred CCCCHHHHHHHHHhhhhcccccC-CCCCChhHHHHHHHHHhccCCC--C--CCcEEEeCChhHHHHHHHHHHHHHhhhc-
Q 003466 415 ATLQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKG--W--ASRAYFSDNGSTAIEIALKMAFRKFSFD- 488 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~~~~~~~~-~~~~~~~~~eLae~L~~~~~~~--~--l~~v~f~~SGseA~e~ALklA~r~~t~~- 488 (818)
+- +|.+.+++.+.++....... .....+...++.++|+++++.+ . .....++++|+||+..|+..+++.+..+
T Consensus 67 ~~-~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~ 145 (502)
T 3hbx_A 67 WM-EPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (502)
T ss_dssp CC-CHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHH
Confidence 44 89999999998876432110 0012334446667778877642 0 1134578999999999998874333211
Q ss_pred --ccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc
Q 003466 489 --HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (818)
Q Consensus 489 --~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~ 566 (818)
.|. ...+..||+- ...|.+...++...|... ..++...
T Consensus 146 ~~~G~-----------~~~~~~vi~~-~~~h~s~~~~~~~~G~~~----------------------------~~v~~~~ 185 (502)
T 3hbx_A 146 KAEGK-----------PVDKPNIVTG-ANVQVCWEKFARYFEVEL----------------------------KEVKLSE 185 (502)
T ss_dssp HHTTC-----------CCSCCEEEEE-TTCCHHHHHHHHHTTCEE----------------------------EEECCBT
T ss_pred HhcCC-----------CCCCcEEEEc-CCchHHHHHHHHHcCcee----------------------------EEEecCC
Confidence 121 0122345554 445655444444433221 0111110
Q ss_pred h-hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003466 567 W-LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (818)
Q Consensus 567 ~-~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~ 645 (818)
. + .-| .+.+++.+. ++..+|++.-. ....|.+.+ +++
T Consensus 186 ~~~-----------~~d------------------~~~l~~~i~--------~~t~~v~~~~~-~n~tG~~~~----l~~ 223 (502)
T 3hbx_A 186 GYY-----------VMD------------------PQQAVDMVD--------ENTICVAAILG-STLNGEFED----VKL 223 (502)
T ss_dssp TBC-----------SCC------------------HHHHHHHCC--------TTEEEEEEEBS-CTTTCCBCC----HHH
T ss_pred CcC-----------cCC------------------HHHHHHHHh--------hCCEEEEEecC-CCCCCcccC----HHH
Confidence 0 0 001 255666664 23455554433 455677766 999
Q ss_pred HHHHHHhc------CCcEEEeecccCccc---CCcc-chhcccCCCCcEE--EecccccCCccccceeecc-hHHH----
Q 003466 646 LVKECQNR------KIPVIFDEVFTGFWR---LGVE-TTADLLGCVPDIA--CYGKLLTGGVIPLAATLAT-NAVF---- 708 (818)
Q Consensus 646 LreLc~~~------gilLI~DEV~TGfGR---tG~~-~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~-~~i~---- 708 (818)
|.++|++| |+++++|+++.|+.. .+.. +.+.. -..|.+ ...|.+.++ .-+|+++++ ++.+
T Consensus 224 I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~l~~p-~g~G~~~~~~~~~l~~~~ 300 (502)
T 3hbx_A 224 LNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEEL 300 (502)
T ss_dssp HHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGG
T ss_pred HHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccccCCC-CCeEEEEEeCHHHhhHHh
Confidence 99999999 999999999976521 1111 11111 134655 345666554 356666654 3333
Q ss_pred ----hhccCC-----------h-H------------------------HHHHHHHHHHHcCCCeeEEEe--eeeEEEEEE
Q 003466 709 ----DSFVGD-----------S-K------------------------LWDLELIQQISSHRTVQRVVA--LGTLCAIEL 746 (818)
Q Consensus 709 ----~~l~~~-----------~-~------------------------~~~~~l~~~l~~~~~v~~vrg--~Gl~~~iel 746 (818)
.++... . . ...+.+.+.|++++.+.-+.. ...++.+.+
T Consensus 301 ~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (502)
T 3hbx_A 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSL 380 (502)
T ss_dssp CEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEE
T ss_pred ccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEe
Confidence 111111 0 1 001123455666664433322 344666666
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEee----c----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRP----L----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.... . .....+.+.|.++|+++.. . ...+|++....+|++|++.+++.|+++++++.
T Consensus 381 ~~~~---~---~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~ 445 (502)
T 3hbx_A 381 KDSS---C---HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELD 445 (502)
T ss_dssp SSCS---S---CCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC---c---CCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4321 0 1234688999999998753 1 15799999999999999999999999998875
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-10 Score=131.80 Aligned_cols=223 Identities=10% Similarity=-0.014 Sum_probs=131.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc-cCCC----CCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG-VGKG----WASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~-~~~~----~l~~v~f~~SGseA~ 474 (818)
..||+..| ..++. +|.+++++.+++....+. ...+..+...++++.+.+. .+.+ ..+.+++++++++|+
T Consensus 105 ~~i~l~~g----~~~~~-~~~~~~al~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal 178 (546)
T 2zy4_A 105 KSLSYVRD----QLGLD-PAAFLHEMVDGILGCNYP-VPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAM 178 (546)
T ss_dssp HHHHHHHH----TSCCC-HHHHHHHHHHHHHTCSCC-SSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHH
T ss_pred hhhecccC----CCCCC-ChHHHHHHHHhhhcCCCC-CCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHH
Confidence 35666543 45788 899999999887532222 1223456677777666432 1110 125899999999999
Q ss_pred HHHHHHHH-HHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 475 EIALKMAF-RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 475 e~ALklA~-r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
..+++... +.+. ..| ..|++.+.+|++....+. +.+..
T Consensus 179 ~~~~~~l~~~~l~-~~G----------------d~Vlv~~P~y~~~~~~~~-~~~~g----------------------- 217 (546)
T 2zy4_A 179 AYIFESLKLNGLL-KAG----------------DKVAIGMPVFTPYIEIPE-LAQYA----------------------- 217 (546)
T ss_dssp HHHHHHHHHTTSS-CTT----------------CEEEEEESCCHHHHHHHH-STTSC-----------------------
T ss_pred HHHHHHhhhhhcC-CCC----------------CEEEEeCCCCccHHHHHH-HcCCC-----------------------
Confidence 99998731 1111 112 378899999998553321 11100
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
...+.+|... -+ .|. .| .+.+++.+. .++.+|++... ++..
T Consensus 218 -----~~~~~v~~~~-----------~~----~~~--~d--------~~~l~~~~~--------~~~k~v~l~~p-~NPt 258 (546)
T 2zy4_A 218 -----LEEVAINADP-----------SL----NWQ--YP--------DSELDKLKD--------PAIKIFFCVNP-SNPP 258 (546)
T ss_dssp -----CEEEEEECBG-----------GG----TTB--CC--------HHHHGGGGS--------TTEEEEEEESS-CSSS
T ss_pred -----cEEEEEecCc-----------cc----CCC--CC--------HHHHHHhhC--------CCCeEEEEECC-CCCC
Confidence 0001111000 00 000 00 134444332 35667666654 7888
Q ss_pred CcccCCHHHHHHHHHHH--HhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc-CCccccceeecchH-HHh
Q 003466 634 GMHMVDPLFQRILVKEC--QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA-VFD 709 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc--~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~-i~~ 709 (818)
|.+. +.+.+++|.++| ++||+++|.||+++.|...+........+....+.+|||.+| .| +.+|.++++++ +++
T Consensus 259 G~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~ 336 (546)
T 2zy4_A 259 SVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG-WRLGVVAAHQQNVFD 336 (546)
T ss_dssp CBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG-GCEEEEEEESSCHHH
T ss_pred CccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC-cceEEEEECCHHHHH
Confidence 8766 788899999999 899999999999998864322221111122222558999997 67 68999998775 544
Q ss_pred h
Q 003466 710 S 710 (818)
Q Consensus 710 ~ 710 (818)
.
T Consensus 337 ~ 337 (546)
T 2zy4_A 337 L 337 (546)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-09 Score=121.14 Aligned_cols=193 Identities=9% Similarity=0.029 Sum_probs=111.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (818)
+.|++.|++.. ..+....+|++.-. ....|.+.+ +++|.++|++||+++++|+++.|+...+..+.....|+
T Consensus 226 ~~Le~~i~~~~--~~g~~~~~vv~~~~-~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~ 298 (481)
T 4e1o_A 226 EALQKAIEEDK--QRGLVPVFVCATLG-TTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE 298 (481)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGG
T ss_pred HHHHHHHHHHH--hCCCCcEEEEEecC-CCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcc
Confidence 55666665310 11122344444432 456677765 99999999999999999999976433333333223354
Q ss_pred CCcEEEe--cccccCCccccceeecchH-HH-hh-------ccCC---------------h---H---------------
Q 003466 681 VPDIACY--GKLLTGGVIPLAATLATNA-VF-DS-------FVGD---------------S---K--------------- 716 (818)
Q Consensus 681 ~PDivtl--gKgLggGy~PlsAvl~~~~-i~-~~-------l~~~---------------~---~--------------- 716 (818)
..|.+++ .|.+++- ...|+++++++ .. +. +... + .
T Consensus 299 ~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g 377 (481)
T 4e1o_A 299 YADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKN 377 (481)
T ss_dssp GCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHH
Confidence 4587765 6888764 35566666543 22 11 1100 0 0
Q ss_pred ---------HHHHHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCc-eEee---cC-CEE
Q 003466 717 ---------LWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV-YMRP---LG-NVI 781 (818)
Q Consensus 717 ---------~~~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv-lv~p---~g-~~i 781 (818)
.+.+.+.+.+++.+.+.-+. ....++.+.+... ......+.++|.++|+ ++.+ .| ..+
T Consensus 378 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~l 450 (481)
T 4e1o_A 378 LQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGP-------NSLTENVLKEIAKAGRLFLIPATIQDKLII 450 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSC-------HHHHHHHHHHHHHHCSSBCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCc-------hHHHHHHHHHHHhCCeEEEEeeEECCEEEE
Confidence 01112344555665442221 1233455555322 1346778899999984 4444 23 578
Q ss_pred EEECCC-CChHHHHHHHHHHHHHHHHHHH
Q 003466 782 YLMCGP-CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 782 r~~ppl-~~t~edId~~~~~l~~~l~~l~ 809 (818)
|++... ..|++||++++++|+++++++.
T Consensus 451 R~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 451 RFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 998664 4589999999999999887653
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-09 Score=119.29 Aligned_cols=163 Identities=12% Similarity=-0.000 Sum_probs=106.4
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGV 695 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy 695 (818)
.++.+|++... ++..|.+.+ +|+++||+++|+||+++.+.+.- ....+ |+++ ++|.+|.+
T Consensus 140 ~~~k~v~~~~~-~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~~---~~~~~----di~~~s~sK~~~~~- 201 (360)
T 1w23_A 140 ENDAYLHITSN-NTIYGTQYQ---------NFPEINHAPLIADMSSDILSRPL---KVNQF----GMIYAGAQKNLGPS- 201 (360)
T ss_dssp TTEEEEEEESE-ETTTTEECS---------SCCCCCSSCEEEECTTTTTSSCC---CGGGC----SEEEEETTTTTSCT-
T ss_pred CCCCEEEEeCC-CCCcceecc---------cccccCCceEEEechhhcCCCCc---CcccC----CEEEEEcccccCCC-
Confidence 35788888886 888888764 34448999999999996543321 11222 7775 55998732
Q ss_pred cccceeecchHHHhhccCC--------------------hH-----------HHH----------------HHHHHHHHc
Q 003466 696 IPLAATLATNAVFDSFVGD--------------------SK-----------LWD----------------LELIQQISS 728 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~~~--------------------~~-----------~~~----------------~~l~~~l~~ 728 (818)
.+|.+++++++++.+... .. .+. +.+.+.+++
T Consensus 202 -G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 280 (360)
T 1w23_A 202 -GVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE 280 (360)
T ss_dssp -TCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999887655321 00 100 112334455
Q ss_pred CCCe-eEE--E--eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHH
Q 003466 729 HRTV-QRV--V--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLK 800 (818)
Q Consensus 729 ~~~v-~~v--r--g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~ 800 (818)
++.+ ... . ..+.++.+.+... ..+..+.+.|.++||.+.+. .+.+|+.+....|++++++++++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~ 352 (360)
T 1w23_A 281 SNGFYVGHAEKGSRSLMNVTFNLRNE--------ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALREL 352 (360)
T ss_dssp TTTSSEESSCGGGBCSSEEEEECSSH--------HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred ccCcccccCCchhccCcEEEEEcCCC--------ccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 5532 211 1 1244666665321 23567888899999999874 26799999988899999999999
Q ss_pred HHHHHHH
Q 003466 801 LYQRLEE 807 (818)
Q Consensus 801 l~~~l~~ 807 (818)
|++++++
T Consensus 353 l~~~~~~ 359 (360)
T 1w23_A 353 MIQFKEN 359 (360)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9887654
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=8.5e-09 Score=119.14 Aligned_cols=291 Identities=12% Similarity=0.031 Sum_probs=161.0
Q ss_pred hHHHHHHHHHhccCCCC-CCcEEEeCChhHHHHHHHHHHHHHhh---hcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 444 PALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFS---FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 444 ~~~eLae~L~~~~~~~~-l~~v~f~~SGseA~e~ALklA~r~~t---~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
...++++++++++|.+. ...++|+++|++||..|+..++..+. ...|. ......+|......|.+
T Consensus 136 le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~-----------~~~~~~~v~~s~~~H~s 204 (511)
T 3vp6_A 136 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM-----------AAVPKLVLFTSEQSHYS 204 (511)
T ss_dssp HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCG-----------GGSCCEEEEEETTSCTH
T ss_pred HHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCc-----------ccCCCeEEEECCCchHH
Confidence 34455566677666431 14789999999999999999843220 11121 00123456666667776
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
...++...|....+ ...++....+ ..|
T Consensus 205 ~~~~~~~~g~g~~~-------------------------~~~v~~d~~~-----------~~d----------------- 231 (511)
T 3vp6_A 205 IKKAGAALGFGTDN-------------------------VILIKCNERG-----------KII----------------- 231 (511)
T ss_dssp HHHHHHHTTSCGGG-------------------------EEEECBCTTS-----------CBC-----------------
T ss_pred HHHHHHHcCCCCCc-------------------------EEEeecCCCC-----------ccC-----------------
Confidence 66665555421000 0011111000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.|++.|++.. ..+..+.+|++.-. ....|.+.+ +++|.++|++||+++++|+++.|.--...-+.....|
T Consensus 232 -~~~Le~~i~~~~--~~g~~~~~vv~~~~-~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g 303 (511)
T 3vp6_A 232 -PADFEAKILEAK--QKGYVPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNG 303 (511)
T ss_dssp -HHHHHHHHHHHH--HTTCEEEEEEEEBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTT
T ss_pred -HHHHHHHHHHHH--hcCCCcEEEEEecC-CCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccC
Confidence 145666665310 11234677887765 677788765 9999999999999999999996542222222222224
Q ss_pred C-CCcEEE--ecccccCCccccceeecch-HHHhh--------ccCC-----------------h---H---------H-
Q 003466 680 C-VPDIAC--YGKLLTGGVIPLAATLATN-AVFDS--------FVGD-----------------S---K---------L- 717 (818)
Q Consensus 680 v-~PDivt--lgKgLggGy~PlsAvl~~~-~i~~~--------l~~~-----------------~---~---------~- 717 (818)
+ ..|.++ ..|.+++. +-.|++++++ ++.+. +... + . .
T Consensus 304 ~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~ 382 (511)
T 3vp6_A 304 IERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK 382 (511)
T ss_dssp GGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH
T ss_pred CccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH
Confidence 4 468764 56888765 3566677654 33322 1100 0 0 0
Q ss_pred --------------HHHHHHHHHHcCCCeeEEE---eeeeEEEEEEecCcccC-CCc-------hHHHHHHHHHHHhCCc
Q 003466 718 --------------WDLELIQQISSHRTVQRVV---ALGTLCAIELQAAGCNA-GYG-------SLYAASLLKKLREDGV 772 (818)
Q Consensus 718 --------------~~~~l~~~l~~~~~v~~vr---g~Gl~~~iel~~~~~~~-~~~-------~~~a~~~~~~l~e~Gv 772 (818)
+.+.+.+.+++.+.+.-+. ....++.+.+.+..-.. ..+ ...+..+.+.|+++|+
T Consensus 383 g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~ 462 (511)
T 3vp6_A 383 GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGT 462 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 0112344556666543222 23445555554321100 000 1124568899999997
Q ss_pred eEee----cC--CEEEEEC-CCCChHHHHHHHHHHHHHHHHH
Q 003466 773 YMRP----LG--NVIYLMC-GPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 773 lv~p----~g--~~ir~~p-pl~~t~edId~~~~~l~~~l~~ 807 (818)
++.. .+ +.+|+.. ...+|++||+++++.|++.-+.
T Consensus 463 ~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 463 TMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp CEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 5542 22 3699988 6778999999999999876544
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=125.87 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCCCCcEE--EecccccCCccccceeecchH-------------
Q 003466 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA------------- 706 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~------------- 706 (818)
+++|+++|++||++|++|++|. |+--.|... ..+. ..|++ +++|+|+|. ..|+++++++
T Consensus 220 l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~--~~~~-~aDiv~~S~hK~l~Gp--~GG~i~~~~~~~~~~~~~~~~~~ 294 (490)
T 2a7v_A 220 YARMREVCDEVKAHLLADMAHISGLVAAKVIP--SPFK-HADIVTTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIP 294 (490)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC--CGGG-TCSEEEEESSGGGCSC--SCEEEEEECSEEEEETTTEEEEE
T ss_pred HHHHHHHHHHcCCEEEEccccccccccCCcCC--CCCC-CCCEEEECCcccCccc--cchheeeccchhcccccccchhh
Confidence 8999999999999999999984 321122211 1111 24766 789999752 4566777653
Q ss_pred --HHhhcc----CC---hH--------------HH--------------HHHHHHHHHcCCCeeEEE-ee-eeEEEEEEe
Q 003466 707 --VFDSFV----GD---SK--------------LW--------------DLELIQQISSHRTVQRVV-AL-GTLCAIELQ 747 (818)
Q Consensus 707 --i~~~l~----~~---~~--------------~~--------------~~~l~~~l~~~~~v~~vr-g~-Gl~~~iel~ 747 (818)
+.+.+. .. +. .+ .+.+.+.|.+.+. .-+. +. ..++-+++.
T Consensus 295 ~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~-~v~~~~t~t~lv~vdl~ 373 (490)
T 2a7v_A 295 YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY-SLVSGGTDNHLVLVDLR 373 (490)
T ss_dssp CCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC-EEGGGSCSSSEEEEECT
T ss_pred HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCc-EEecCCCCCeEEEEEeC
Confidence 122111 11 00 00 0112333444332 1111 11 134444443
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEee----------cCCEEEEECCC----CChHHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRP----------LGNVIYLMCGP----CSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----------~g~~ir~~ppl----~~t~edId~~~~~l~~~l~~l 808 (818)
... ..+..+.+.|.+.||.+.. ....||+..|+ .++++|++++++.|.+++...
T Consensus 374 ~~g-------~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 374 PKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp TTT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCC-------CCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 221 1245577888899999973 13689996654 478999999999999998754
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.7e-09 Score=118.88 Aligned_cols=206 Identities=12% Similarity=-0.024 Sum_probs=121.1
Q ss_pred CHHHHHHHHHhhhh---cccccCCCCCChhHHHHHHHHHhccCCCCCCcEEE---eCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~---~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f---~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
+++|.+|+.++.-. ++......+...-..+|+++++++++. +.+++ ++||++|+..+++... +.|
T Consensus 31 ~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~---e~alv~p~~~sGt~Ai~~al~all-----~~G- 101 (409)
T 3jzl_A 31 QAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT---EAALVRPQIISGTHAISTVLFGIL-----RPD- 101 (409)
T ss_dssp HHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTSCSHHHHHHHHHHHHC-----CTT-
T ss_pred HHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC---CcEEEECCCccHHHHHHHHHHHhc-----CCC-
Confidence 67888998886422 222222223345678899999999984 45555 8999999999988651 222
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (818)
..||+.++..|+.+...+..+|.. .. .....|. ...+++....+
T Consensus 102 ---------------D~Vl~~~~~~y~~~~~~~~~~g~~--~~-----~l~~~G~-----------~~~~v~~~~~g--- 145 (409)
T 3jzl_A 102 ---------------DELLYITGQPYDTLEEIVGIRKQG--QG-----SLKDFHI-----------GYSSVPLLENG--- 145 (409)
T ss_dssp ---------------CEEEECSSSCCTTHHHHHTSSSSS--SS-----CTGGGTC-----------EEEECCCCTTS---
T ss_pred ---------------CEEEEeCCCCcHhHHHHHhcccch--hh-----HHHHcCC-----------EEEEeCCCCCC---
Confidence 267777634444443222222210 00 0000000 00111110000
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCcccCCHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRILV 647 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP----V~~g~gG~~~~p~~fl~~Lr 647 (818)
..| .+.+++.+. .++.+|++|+ . .+..|.+. -+++|.
T Consensus 146 --------~~d------------------~e~l~~ai~--------~~tklV~i~~s~g~p-~nptg~v~----~l~~I~ 186 (409)
T 3jzl_A 146 --------DVD------------------FPRIAKKMT--------PKTKMIGIQRSRGYA-DRPSFTIE----KIKEMI 186 (409)
T ss_dssp --------CCC------------------HHHHHHHCC--------TTEEEEEEECSCTTS-SSCCCCHH----HHHHHH
T ss_pred --------CcC------------------HHHHHHhcc--------CCCeEEEEECCCCCC-CCCcCccc----cHHHHH
Confidence 011 255666663 3678999998 6 66667554 499999
Q ss_pred HHHHh--cCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccc-cceeecchHHHhhcc
Q 003466 648 KECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFV 712 (818)
Q Consensus 648 eLc~~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~P-lsAvl~~~~i~~~l~ 712 (818)
++|++ ||+++|+||++. .+..+. +......|++ +++|.+||+..| .|.+++++++++.+.
T Consensus 187 ~la~~~~~~~~livD~a~~-~~~~~~----~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 251 (409)
T 3jzl_A 187 VFVKNINPEVIVFVDNCYG-EFVEYQ----EPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCG 251 (409)
T ss_dssp HHHHHHCTTCEEEEECTTC-TTTSSC----CSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHhhCCCCEEEEeCCcc-cccccC----CccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHH
Confidence 99999 999999999984 322111 1112235776 799999976445 466888888877654
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-08 Score=114.52 Aligned_cols=175 Identities=10% Similarity=0.033 Sum_probs=103.8
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEEEe--cccccCCccc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVIP 697 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gKgLggGy~P 697 (818)
..+++.+ ....|.+.+ +++|.++|++||+++++|+++.|.-..+..+.....|+ ..|.+++ .|.+++. ..
T Consensus 237 ~v~~~~~--~t~~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g 309 (475)
T 3k40_A 237 YAVVTLG--TTNSCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FD 309 (475)
T ss_dssp EEEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SS
T ss_pred EEEEEec--CCCCcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-Cc
Confidence 3444555 355677665 99999999999999999999965323332222222344 4688765 5877764 35
Q ss_pred cceeecchH-HH-hh-------ccC---------------ChH---------------------------HHHHHHHHHH
Q 003466 698 LAATLATNA-VF-DS-------FVG---------------DSK---------------------------LWDLELIQQI 726 (818)
Q Consensus 698 lsAvl~~~~-i~-~~-------l~~---------------~~~---------------------------~~~~~l~~~l 726 (818)
.|+++++++ .. +. +.. .++ .+.+.+.+.+
T Consensus 310 ~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L 389 (475)
T 3k40_A 310 CSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLC 389 (475)
T ss_dssp CEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666543 21 11 100 000 0111234455
Q ss_pred HcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceE-ee---cC-CEEEEECCC-CChHHHHHHHHH
Q 003466 727 SSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RP---LG-NVIYLMCGP-CSSPEVCSQLLL 799 (818)
Q Consensus 727 ~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv-~p---~g-~~ir~~ppl-~~t~edId~~~~ 799 (818)
++.+.+.-+. ....++.+.+... ......+.++|.++|.+. .+ .| ..+|++... ..|++||+++++
T Consensus 390 ~~~~g~~l~~~~~~~iv~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~ 462 (475)
T 3k40_A 390 VADSRFELAAEINMGLVCFRLKGS-------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWK 462 (475)
T ss_dssp HHSTTEEESSCCBTTEEEEEESSC-------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHH
T ss_pred hcCCCEEEecCCceEEEEEEeCCc-------hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHH
Confidence 5565442211 2234555555332 134678889999888754 33 23 679998754 458999999999
Q ss_pred HHHHHHHHHH
Q 003466 800 KLYQRLEEFD 809 (818)
Q Consensus 800 ~l~~~l~~l~ 809 (818)
+|+++++++.
T Consensus 463 ~i~~~~~~~~ 472 (475)
T 3k40_A 463 EVSAAADEME 472 (475)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987764
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-09 Score=117.93 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=104.7
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCcc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~ 696 (818)
++.+|++... ++..|.+.+ ++++.++ +|+++|+||+++.+.+.- ..+ .+|+++++ |.+|.+.
T Consensus 165 ~~~~v~~~~~-~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~~---~~~----~~di~~~s~sK~~~~~g- 228 (398)
T 2fyf_A 165 SVDVIAWAHN-ETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLPV---DIA----ETDAYYFAPQKNFASDG- 228 (398)
T ss_dssp TCSEEEEESE-ETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSCC---CGG----GCSEEEECTTSTTCSCS-
T ss_pred CCCEEEEeCc-CCCcceecc----hHHhhhh---cCCeEEEEeccccCCccc---Ccc----cCcEEEEecCcccCCCC-
Confidence 4567777765 788888876 3334444 999999999996543321 111 27888655 9998651
Q ss_pred ccceeecchHHHhhcc------------------------C---ChH-------------H------HH----------H
Q 003466 697 PLAATLATNAVFDSFV------------------------G---DSK-------------L------WD----------L 720 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~------------------------~---~~~-------------~------~~----------~ 720 (818)
-+|++++++++++.+. . ... . +. +
T Consensus 229 g~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 308 (398)
T 2fyf_A 229 GLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ 308 (398)
T ss_dssp SEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred ceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2678888988866441 0 000 0 10 1
Q ss_pred HHHHHHHcCCCeeEE---E--eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCCh
Q 003466 721 ELIQQISSHRTVQRV---V--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSS 790 (818)
Q Consensus 721 ~l~~~l~~~~~v~~v---r--g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t 790 (818)
.+.+.+++.+.+.-+ . ..+.++.+.+... ..+..+.+.|.++||.+++. ++.+|+.+....|
T Consensus 309 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t 380 (398)
T 2fyf_A 309 RLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDD--------VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVE 380 (398)
T ss_dssp HHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTT--------SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSC
T ss_pred HHHHHHHHcCCceeccCChhhcCCcEEEEECCCC--------CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCC
Confidence 123344555443222 1 1233677776421 12557889999999999762 3789999998889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003466 791 PEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 791 ~edId~~~~~l~~~l~~ 807 (818)
++|+++++++|++++++
T Consensus 381 ~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 381 PDDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988754
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.8e-09 Score=118.55 Aligned_cols=179 Identities=13% Similarity=0.029 Sum_probs=104.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv 680 (818)
+.|++.+.+ .+..+|++ .. .+.+ .+. | +++|+++|++||++||+||+|. |+--.|..- .-++
T Consensus 183 d~le~~i~~-------~~tklIi~-~~-sn~~-~~~-d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~--~p~~- 245 (483)
T 1rv3_A 183 DRLEENARL-------FHPKLIIA-GT-SCYS-RNL-D---YGRLRKIADENGAYLMADMAHISGLVVAGVVP--SPFE- 245 (483)
T ss_dssp HHHHHHHHH-------HCCSEEEE-CC-SSCC-SCC-C---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC--CGGG-
T ss_pred HHHHHHHhh-------cCCcEEEE-eC-CcCC-CcC-C---HHHHHHHHHHcCCEEEEEccchhcccccCCCC--CCCC-
Confidence 567777752 23457777 54 4444 333 3 8999999999999999999985 331112110 0001
Q ss_pred CCcEEE--ecccccCCccccceeecchH---------------HHhhc----c---CChH-------------H------
Q 003466 681 VPDIAC--YGKLLTGGVIPLAATLATNA---------------VFDSF----V---GDSK-------------L------ 717 (818)
Q Consensus 681 ~PDivt--lgKgLggGy~PlsAvl~~~~---------------i~~~l----~---~~~~-------------~------ 717 (818)
..|+++ ++|.|+|. ..|.++++++ +.+.+ . .+.. .
T Consensus 246 ~~div~~s~~K~l~Gp--rgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~ 323 (483)
T 1rv3_A 246 HCHVVTTTTHKTLRGC--RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEF 323 (483)
T ss_dssp TCSEEEEESSGGGCCC--SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHH
T ss_pred CCcEEEecCcccCCCC--CceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhH
Confidence 358875 55999753 5577777764 22211 0 0000 0
Q ss_pred ---------HHHHHHHHHHcCCCeeEEEe-ee-eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe----ec-----
Q 003466 718 ---------WDLELIQQISSHRTVQRVVA-LG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL----- 777 (818)
Q Consensus 718 ---------~~~~l~~~l~~~~~v~~vrg-~G-l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~----p~----- 777 (818)
..+.+.+.|.+.+. .-+.+ .+ .+.-+.+.... .....+.+.|.+.||.+. |+
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~v~~~~~g-------~~~~~~~~~L~~~gI~v~~~~~pg~~~~~ 395 (483)
T 1rv3_A 324 KEYQRQVVANCRALSAALVELGY-KIVTGGSDNHLILVDLRSKG-------TDGGRAEKVLEACSIACNKNTCPGDKSAL 395 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-EEGGGSCSSSEEEEEGGGGT-------CCHHHHHHHHHHTTEECEEECCSSCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-EeccCCCCCceEEEeccCCC-------CCHHHHHHHHHhCCcEEecCCCCCCCcCC
Confidence 00123334444432 11111 11 23334443211 114456777889999998 53
Q ss_pred -CCEEEEECCCCCh----HHHHHHHHHHHHHHHHH
Q 003466 778 -GNVIYLMCGPCSS----PEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 778 -g~~ir~~ppl~~t----~edId~~~~~l~~~l~~ 807 (818)
...+|+..+...| ++|+++++++|.++++.
T Consensus 396 ~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 396 RPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp SCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 2589999987667 99999999999998876
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=116.40 Aligned_cols=181 Identities=13% Similarity=-0.023 Sum_probs=105.0
Q ss_pred HHHHHHH-hcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhccc-
Q 003466 602 SYISQNL-LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL- 678 (818)
Q Consensus 602 ~~Le~~L-~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~- 678 (818)
+.|++.| .. ....++.+|++.-. ....|.+.+ +++|.++|++||+++++||++.++. .|.. .....+
T Consensus 217 ~~l~~~i~~~----~~~~~~~~vv~~~~-nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~g~~~~~~~~~~ 286 (456)
T 2z67_A 217 EDIENAIKKE----IELGNRPCVLSTLT-FFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-NYYLEKLKKAFK 286 (456)
T ss_dssp HHHHHHHHHH----HHTTCCEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-HHHHHHHHHHHT
T ss_pred HHHHHHHHHH----hhCCCeEEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-HHhhHHHHHhhC
Confidence 5566666 31 00124555544432 456777766 9999999999999999999986552 2210 111111
Q ss_pred CCCCcEEEe--cccccCCccccceeec-chHHHhhcc----CC---h-H--------H---------------HHHHHHH
Q 003466 679 GCVPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFV----GD---S-K--------L---------------WDLELIQ 724 (818)
Q Consensus 679 gv~PDivtl--gKgLggGy~PlsAvl~-~~~i~~~l~----~~---~-~--------~---------------~~~~l~~ 724 (818)
+ .+|++++ .|.++++ ..+|++++ ++++++.+. +. . . . +.+.+.+
T Consensus 287 ~-~~D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~ 364 (456)
T 2z67_A 287 Y-RVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDE 364 (456)
T ss_dssp S-CCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 6888765 8976666 56788888 466665432 11 1 0 0 0112233
Q ss_pred HHHcC----CC-eeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCc---eEe------------e-cCCEEEE
Q 003466 725 QISSH----RT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV---YMR------------P-LGNVIYL 783 (818)
Q Consensus 725 ~l~~~----~~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv---lv~------------p-~g~~ir~ 783 (818)
.|++. +. +.... .++.+.+..+. . ...+.+.|.++|+ -+. . ....+|+
T Consensus 365 ~L~~~~~~~g~~v~~~~---~~v~~~~~~~~-------~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~ 433 (456)
T 2z67_A 365 LLNDLSKKTGGKFLDVE---SPIASCISVNS-------D-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVM 433 (456)
T ss_dssp HHHHHHHHSSCCBCCCC---CSSEEEEECSS-------C-HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEE
T ss_pred HHHhcccccCCEecCCC---CeEEEEEeccc-------H-HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhh
Confidence 34433 21 11111 23334442121 0 3467888999986 222 1 1357888
Q ss_pred ECCCCChHHHHHHHHHHHHHHH
Q 003466 784 MCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 784 ~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+..+|++|||+++++|++++
T Consensus 434 s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 434 NAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp ECCTTCCHHHHHHHHHHHHTC-
T ss_pred hhhcCCCHHHHHHHHHHHHHHh
Confidence 8888899999999999998754
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-08 Score=104.31 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC----CCHHH
Q 003466 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL----VNEVP 296 (818)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~----~~~~~ 296 (818)
||+|||++.+++.. ....++...+ .||+|+.....++.++...++.++..+.++.|+|+|++.. ...+.
T Consensus 112 yD~viiD~~~~~~~------~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~ 184 (237)
T 1g3q_A 112 FDFILIDCPAGLQL------DAMSAMLSGE-EALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPEA 184 (237)
T ss_dssp CSEEEEECCSSSSH------HHHHHHTTCS-EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTCCCHHH
T ss_pred CCEEEEECCCCcCH------HHHHHHHHCC-eEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccchhHHHH
Confidence 99999999876542 2334444444 5899999999999999999999998889999999999832 34667
Q ss_pred HHHhhcCCCCEEe-cCCCCC
Q 003466 297 LMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 297 l~~~~~~~~pvlg-iP~~~~ 315 (818)
+++.+ +.|+++ ||+.+.
T Consensus 185 ~~~~~--~~~~~~~Ip~~~~ 202 (237)
T 1g3q_A 185 AEDVM--EVPLLAVIPEDPA 202 (237)
T ss_dssp HHHHH--CSCEEEEEECCHH
T ss_pred HHHHh--CccceeeCCCChH
Confidence 77777 899999 998654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=9.8e-08 Score=109.03 Aligned_cols=175 Identities=12% Similarity=0.042 Sum_probs=104.7
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEEEe--cccccCCccc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVIP 697 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gKgLggGy~P 697 (818)
+.++.-| ....|.+.+ +++|.++|++||+++++|+++.|+-.....+.....|+ ..|.+++ .|.++.. +.
T Consensus 238 ~vv~~~~--~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~ 310 (486)
T 1js3_A 238 FVVATLG--TTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FD 310 (486)
T ss_dssp EEEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SS
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cc
Confidence 4445555 455677665 99999999999999999999965432222111111233 3587764 6887765 46
Q ss_pred cceeecchH--HHhhc-------cC-----------------Ch---H---------HH---------------HHHHHH
Q 003466 698 LAATLATNA--VFDSF-------VG-----------------DS---K---------LW---------------DLELIQ 724 (818)
Q Consensus 698 lsAvl~~~~--i~~~l-------~~-----------------~~---~---------~~---------------~~~l~~ 724 (818)
+|+++++++ +.+.+ .. .+ . .+ .+.+.+
T Consensus 311 ~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~ 390 (486)
T 1js3_A 311 CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEA 390 (486)
T ss_dssp CEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 777888644 22222 11 00 0 00 112334
Q ss_pred HHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceE-ee---cC-CEEEEEC-CCCChHHHHHHH
Q 003466 725 QISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RP---LG-NVIYLMC-GPCSSPEVCSQL 797 (818)
Q Consensus 725 ~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv-~p---~g-~~ir~~p-pl~~t~edId~~ 797 (818)
.+++.+.+.-+. ..+.++.+.+... ......+.+.|.++|+++ .+ .+ ..+|++. ....|++||+++
T Consensus 391 ~L~~~~~~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~ 463 (486)
T 1js3_A 391 FVLQDPRFEVCAEVTLGLVCFRLKGS-------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLA 463 (486)
T ss_dssp HHHHCTTEEECSCCCSSEEEEEESSC-------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHH
T ss_pred HHhcCCCeEEeCCCceeEEEEEecCh-------HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHH
Confidence 455555443221 2344555655321 123567888899889654 32 12 5788885 444689999999
Q ss_pred HHHHHHHHHHHH
Q 003466 798 LLKLYQRLEEFD 809 (818)
Q Consensus 798 ~~~l~~~l~~l~ 809 (818)
+++|.++++++.
T Consensus 464 ~~~l~~~~~~~~ 475 (486)
T 1js3_A 464 WEHIRGLAAELL 475 (486)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.9e-08 Score=110.33 Aligned_cols=206 Identities=13% Similarity=0.035 Sum_probs=119.1
Q ss_pred CHHHHHHHHHhhhhccc---ccCCCCCChhHHHHHHHHHhccCCCCCCcEEE---eCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAARFGH---VMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~---~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f---~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
+++|.+|+.+......+ .....+...-..+|+++++++++. +.+++ ++||++|+..++... -++|
T Consensus 46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~---e~alv~p~~~sGt~A~~~al~al-----l~pG- 116 (427)
T 3hvy_A 46 QLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT---ESAFVRPHFVNGTHAIGAALFGN-----LRPN- 116 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTCCSHHHHHHHHHHHT-----CCTT-
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC---CceEEeCCCCcHHHHHHHHHHHh-----cCCC-
Confidence 78899998885432111 111122344578899999999984 45566 799999999988855 1222
Q ss_pred cccccCCCccccccceEEEEEc-CCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALK-GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~-~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
..||+.+ ..|++.. .+.|...... .......|. ...+++.+ .+
T Consensus 117 ---------------D~Vl~~~~~~y~~~~----~~~g~~~~~~---~~~l~~~G~-----------~~~~v~~~-~~-- 160 (427)
T 3hvy_A 117 ---------------DTMMSICGMPYDTLH----DIIGMDDSKK---VGSLREYGV-----------KYKMVDLK-DG-- 160 (427)
T ss_dssp ---------------CEEEECSSSCCGGGH----HHHTCCTTCC---SCCTGGGTC-----------EEEECCCB-TT--
T ss_pred ---------------CEEEEeCCCCchhHH----HHhccccchh---hhHHHHcCC-----------EEEEecCC-CC--
Confidence 3677777 5555432 1111000000 000000000 00111110 00
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCcccCCHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRIL 646 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP----V~~g~gG~~~~p~~fl~~L 646 (818)
-.| .+.+++.+.+ ..++.+|++|+ . .+..|.+ .-+++|
T Consensus 161 ---------~~d------------------~e~l~~~i~~------~~~tklV~i~~s~gyp-~nptg~v----~dl~~i 202 (427)
T 3hvy_A 161 ---------KVD------------------INTVKEELKK------DDSIKLIHIQRSTGYG-WRKSLRI----AEIAEI 202 (427)
T ss_dssp ---------BCC------------------HHHHHHHHHH------CTTEEEEEEESSCCSS-SSCCCCH----HHHHHH
T ss_pred ---------CcC------------------HHHHHHHhhC------CCCCEEEEEECCCCCC-CCccccH----HHHHHH
Confidence 011 2567777752 14678999999 5 4555544 459999
Q ss_pred HHHHHh--cCCcEEEeecccCcccCC-ccchhcccCCCCcEE--EecccccCCcccc-ceeecchHHHhhcc
Q 003466 647 VKECQN--RKIPVIFDEVFTGFWRLG-VETTADLLGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSFV 712 (818)
Q Consensus 647 reLc~~--~gilLI~DEV~TGfGRtG-~~~a~e~~gv~PDiv--tlgKgLggGy~Pl-sAvl~~~~i~~~l~ 712 (818)
.++|++ ||+++|+||++..+ ..+ ... .+| .|++ +++|.+||+..|. |.+++++++++.+.
T Consensus 203 ~~ia~~~~~g~~livD~a~~~~-~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~ 268 (427)
T 3hvy_A 203 IKSIREVNENVIVFVDNCYGEF-VEEKEPT---DVG--ADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQAT 268 (427)
T ss_dssp HHHHHHHCSSSEEEEECTTCTT-TSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCcccc-ccCCCCc---ccC--CeEEEECCcccccccccceEEEEEECHHHHHHHH
Confidence 999999 89999999998433 311 111 123 4766 7999999864454 56778888877553
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.2e-08 Score=109.76 Aligned_cols=278 Identities=11% Similarity=0.049 Sum_probs=157.7
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHH-HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELL-LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L-~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
.|++.+|+.+.++..... ...+...+|.+++ +++++. .+.+++++||++|+..|++.+ . -..|
T Consensus 15 ~~~i~~a~~~~~~~~~~~----~~~~~~~~l~~~~~a~~~g~--~~~~v~~~sgt~al~~al~~l---~-~~~G------ 78 (377)
T 3ju7_A 15 VIEYLDELKEIDASHIYT----NYGPINQRFEQTIMSGFFQN--RGAVTTVANATLGLMAAIQLK---K-RKKG------ 78 (377)
T ss_dssp GGGGHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHTSTT--CSEEEEESCHHHHHHHHHHHH---S-CTTC------
T ss_pred cHHHHHHHHHHHHcCCcc----cCCHHHHHHHHHHHHHHhCC--CCeEEEeCCHHHHHHHHHHHc---C-CCCc------
Confidence 478899999888763221 1246788999999 999872 257899999999999998865 0 1122
Q ss_pred CCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC-cchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~ 575 (818)
..||+....|.+ +..++...|... ..+++ |+.+
T Consensus 79 ----------d~Vi~~~~~~~~-~~~~~~~~G~~~----------------------------~~v~~~~~~~------- 112 (377)
T 3ju7_A 79 ----------KYALMPSFTFPA-TPLAAIWCGLEP----------------------------YFIDISIDDW------- 112 (377)
T ss_dssp ----------CEEEEESSSCTH-HHHHHHHTTCEE----------------------------EEECBCTTTC-------
T ss_pred ----------CEEEECCCCcHH-HHHHHHHcCCEE----------------------------EEEecCCccC-------
Confidence 367877777765 333333322210 00110 0000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+.. . ..++.+|+ |+ . ..|...+ +++|.++|+ ||+
T Consensus 113 ----~~d------------------~~~l~~~i~~----~-~~~tk~v~--~~-~-~~G~~~~----~~~i~~la~-~~~ 156 (377)
T 3ju7_A 113 ----YMD------------------KTVLWDKIEE----L-KEEVAIVV--PY-A-TFGSWMN----LEEYEELEK-KGV 156 (377)
T ss_dssp ----SBC------------------HHHHHHHHHH----H-GGGEEEEC--CB-C-GGGBCCC----CHHHHHHHH-TTC
T ss_pred ----CcC------------------HHHHHHHHhc----C-CCCceEEE--EE-C-CCCCccC----HHHHHHHHh-cCC
Confidence 011 2556666631 0 12366766 43 2 3455544 799999999 999
Q ss_pred cEEEeecccCcccCCccchhccc-CCCCcEEEec----ccccCCccccceeecc-hHHHhhc---cCCh-----------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLL-GCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSF---VGDS----------- 715 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~-gv~PDivtlg----KgLggGy~PlsAvl~~-~~i~~~l---~~~~----------- 715 (818)
++|.|++|+ +|-. +..... +.-.|+.++| |.+++| ..|+++++ +++++.+ ...+
T Consensus 157 ~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g 230 (377)
T 3ju7_A 157 PVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMG 230 (377)
T ss_dssp CBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSC
T ss_pred EEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHHHHHHHhcCCCCCCceeecc
Confidence 999999994 5422 212223 2336888776 999876 35566654 5554422 2110
Q ss_pred ---H------------------H------HHHHHHHHHHcCCCe---eEE-Eee---eeEEEEEEecCcccCCCchHHHH
Q 003466 716 ---K------------------L------WDLELIQQISSHRTV---QRV-VAL---GTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 716 ---~------------------~------~~~~l~~~l~~~~~v---~~v-rg~---Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
. . +.+.+.+.|+.++.+ ... .+. -.++.+.+... ....
T Consensus 231 ~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 302 (377)
T 3ju7_A 231 FNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEE--------VRNK 302 (377)
T ss_dssp CBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTT--------SCHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCCh--------hhHH
Confidence 0 0 011233444555421 111 010 11223333211 1255
Q ss_pred HHHHHHHhCCceEeec--------------------------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPL--------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~--------------------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+.+.|.++||.++.. ...|++.....+|++|++++++.|.+++..
T Consensus 303 ~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 303 QVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 7889999999988631 135666666678999999999999887754
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=107.46 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCcccCCHHHHHHHHHHHHh--cCCcEEEeecccCccc-CCccch
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWR-LGVETT 674 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEP----V~~g~gG~~~~p~~fl~~LreLc~~--~gilLI~DEV~TGfGR-tG~~~a 674 (818)
+.+++.+.+ ..++.+|++|+ . .+..|.+ .-+++|.++|++ ||+++|+||++..+ . .....
T Consensus 165 e~l~~~l~~------~~~tklV~i~~s~~~p-~nptg~i----~dl~~i~~la~~~~~g~~livD~a~~~~-~~~~~p~- 231 (427)
T 3i16_A 165 EEIEKVLKE------DESITLVHIQRSTGYG-WRRALLI----EDIKSIVDCVKNIRKDIICFVDNCYGEF-MDTKEPT- 231 (427)
T ss_dssp HHHHHHHHT------CTTEEEEEEECSCCSS-SSCCCCH----HHHHHHHHHHHHHCTTSEEEEECTTTTT-SSSSCGG-
T ss_pred HHHHHHhhC------CCCCEEEEEEcCCCCC-CCCcccH----HHHHHHHHHHHHhCCCCEEEEECCCccc-cccCCcc-
Confidence 567777752 14688999998 5 5655644 449999999999 99999999999533 2 11111
Q ss_pred hcccCCCCcEE--EecccccCCccc-cceeecchHHHhhcc
Q 003466 675 ADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFV 712 (818)
Q Consensus 675 ~e~~gv~PDiv--tlgKgLggGy~P-lsAvl~~~~i~~~l~ 712 (818)
.+| .|++ +++|.+||+.-| .|.+++++++++.+.
T Consensus 232 --~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~ 268 (427)
T 3i16_A 232 --DVG--ADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTS 268 (427)
T ss_dssp --GGT--CSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHH
T ss_pred --ccC--CeEEEecCcccCCCCCCceEEEEEECHHHHHHHH
Confidence 123 4766 799999875434 466778888887654
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.8e-08 Score=102.28 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHH
Q 003466 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (818)
Q Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (818)
.+.+.+.++.+.+. ||+|||++.+|+.. ....++...+ .||+|+.....++.++...++.
T Consensus 97 ~~~l~~~l~~l~~~-------------yD~viiD~~~~~~~------~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~ 156 (263)
T 1hyq_A 97 PEKLEDVLTQIMES-------------TDILLLDAPAGLER------SAVIAIAAAQ-ELLLVVNPEISSITDGLKTKIV 156 (263)
T ss_dssp HHHHHHHHHHHHHT-------------CSEEEEECCSSSSH------HHHHHHHHSS-EEEEEECSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh-------------CCEEEEeCCCCCCh------HHHHHHHHCC-EEEEEeCCChhHHHHHHHHHHH
Confidence 34566666666544 99999999876542 2333444444 7899999998899999999999
Q ss_pred HHhCCCcEEEEEEccCCCCC----HHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 274 LKLRGYDVVAVVFEDHGLVN----EVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 274 l~~~~~~v~gvi~N~~~~~~----~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
++..+.++.|+|+|++.... .+.+.+.+ +.|+++ ||+.+.+
T Consensus 157 l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~~ 202 (263)
T 1hyq_A 157 AERLGTKVLGVVVNRITTLGIEMAKNEIEAIL--EAKVIGLIPEDPEV 202 (263)
T ss_dssp HHHHTCEEEEEEEEEECTTTHHHHHHHHHHHT--TSCEEEEEECCHHH
T ss_pred HHhcCCCeeEEEEccCCcccccchHHHHHHHh--CCCeEEECCCCHHH
Confidence 98888899999999985433 34445555 899999 9986543
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.7e-08 Score=117.43 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+..+.+.|.++||++...+ .++|++++..+|++++++++++|.+..+.++
T Consensus 517 ~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 517 ATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp HHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 5678889999999998754 8999999999999999999999999887764
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-07 Score=96.59 Aligned_cols=89 Identities=8% Similarity=-0.075 Sum_probs=64.7
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC---------
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG--------- 290 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~--------- 290 (818)
.||+|||++.+|+..+. ...++...--.+|+|+.....++.++..+++.++..++++.|+|+|++.
T Consensus 128 ~yD~ViID~pp~~~~~~-----~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAP-----LTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp SCSEEEEECCSSSSSHH-----HHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCE
T ss_pred CCCEEEEECcCCCchHH-----HHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccc
Confidence 49999999988764331 1111111112488899999999999999999999889999999999873
Q ss_pred -----CCCHHHHHHhhcCCCCEEe-cCCCCC
Q 003466 291 -----LVNEVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 291 -----~~~~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
....+.+.+.+ +.|+++ ||+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~--g~~~~~~Ip~~~~ 231 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKY--NIGFFTSIPIEEE 231 (262)
T ss_dssp ECTTCCCCHHHHHHHT--TCSEEEECCBCHH
T ss_pred cccccccHHHHHHHHc--CCCeEEEeeCchH
Confidence 12356666666 899999 887544
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.7e-08 Score=110.16 Aligned_cols=165 Identities=15% Similarity=0.065 Sum_probs=98.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeec-ccCcccCCccchhcccCCCCcEEEe-ccccc----
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV-FTGFWRLGVETTADLLGCVPDIACY-GKLLT---- 692 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV-~TGfGRtG~~~a~e~~gv~PDivtl-gKgLg---- 692 (818)
++++|++... +..|.+.+ +++|.++|++||+++|+|-- + .+|....- ..+ .+|++++ +|.+|
T Consensus 196 ~t~~v~i~~p--n~tG~~~~----l~~i~~la~~~g~~vivd~d~~-a~g~~~~~---~~~--g~D~~~~s~kk~~~~~~ 263 (438)
T 1wyu_A 196 EVGAVVVQNP--NFLGALED----LGPFAEAAHGAGALFVAVADPL-SLGVLKPP---GAY--GADIAVGDGQSLGLPMG 263 (438)
T ss_dssp TEEEEEEESS--CTTSBCCC----HHHHHHHHHHTTCEEEEECCTT-GGGTBCCH---HHH--TCSEEEEECTTTTCCCG
T ss_pred CeEEEEEECC--CCCeEEec----HHHHHHHHHHcCCEEEEEechh-hccCcCCC---ccC--CCCEEEECCcccCCCcc
Confidence 5677777763 55677765 99999999999999996621 2 23322211 223 3788887 47543
Q ss_pred -CCccccceeecchHHHhhccCC-------------------------------h------H------H--HH-------
Q 003466 693 -GGVIPLAATLATNAVFDSFVGD-------------------------------S------K------L--WD------- 719 (818)
Q Consensus 693 -gGy~PlsAvl~~~~i~~~l~~~-------------------------------~------~------~--~~------- 719 (818)
+| .-+|.+++++++.+.+... . . . +.
T Consensus 264 ~~G-p~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~ 342 (438)
T 1wyu_A 264 FGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGL 342 (438)
T ss_dssp GGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHH
Confidence 22 1356778888776654110 0 0 0 10
Q ss_pred -----------HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceE--eec----CCEE
Q 003466 720 -----------LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM--RPL----GNVI 781 (818)
Q Consensus 720 -----------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv--~p~----g~~i 781 (818)
+.+.+.|++.+.+. +.+. ..+..+.+... ..+..++++|.++||.+ .+. ++.+
T Consensus 343 ~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~l 413 (438)
T 1wyu_A 343 REVALKSVEMAHKLHALLLEVPGVR-PFTPKPFFNEFALALP--------KDPEAVRRALAERGFHGATPVPREYGENLA 413 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCE-ECSCSSBCSEEEEECS--------SCHHHHHHHHHHTTCCCCEECCTTSCSSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE-ECCCCCeEEEEEEeCC--------CCHHHHHHHHHHCCceeccccccccCCCeE
Confidence 11223344443322 2222 12211222111 12567889999999999 442 4789
Q ss_pred EEECCCCChHHHHHHHHHHHHHHH
Q 003466 782 YLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 782 r~~ppl~~t~edId~~~~~l~~~l 805 (818)
|+++...+|++|+++++++|++++
T Consensus 414 Ris~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 414 LFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEecccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998754
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-07 Score=96.37 Aligned_cols=101 Identities=8% Similarity=0.052 Sum_probs=73.8
Q ss_pred CChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003466 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (818)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (818)
+..+.+.+.++.+.+. ||+|||.+.+++.. ....+....+ -+|+|+.....++..+...+
T Consensus 103 ~~~~~l~~~l~~l~~~-------------yD~viiD~p~~~~~------~~~~~l~~ad-~viiv~~~~~~~~~~~~~~~ 162 (245)
T 3ea0_A 103 IEPERVSDLIHIAASF-------------YDYIIVDFGASIDH------VGVWVLEHLD-ELCIVTTPSLQSLRRAGQLL 162 (245)
T ss_dssp CCHHHHHHHHHHHHHH-------------CSEEEEEEESSCCT------THHHHGGGCS-EEEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh-------------CCEEEEeCCCCCch------HHHHHHHHCC-EEEEEecCcHHHHHHHHHHH
Confidence 3455666777666555 99999999776522 2333333333 27888888888899999999
Q ss_pred HHHHhCC--CcEEEEEEccCC---CCCHHHHHHhhcCCCCEEe-cCCCC
Q 003466 272 ESLKLRG--YDVVAVVFEDHG---LVNEVPLMSYLRNRVPVLV-LPPLP 314 (818)
Q Consensus 272 ~~l~~~~--~~v~gvi~N~~~---~~~~~~l~~~~~~~~pvlg-iP~~~ 314 (818)
+.++..+ ..+.|+|+|++. ....+.+++.+ +.|+++ ||+..
T Consensus 163 ~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~--~~~v~~~ip~~~ 209 (245)
T 3ea0_A 163 KLCKEFEKPISRIEIILNRADTNSRITSDEIEKVI--GRPISKRIPQDE 209 (245)
T ss_dssp HHHHTCSSCCSCEEEEEESTTSCTTSCHHHHHHHH--TSCEEEEECCCH
T ss_pred HHHHHhCCCccceEEEEecCCCCCCCCHHHHHHHh--CCCeEEECCCCh
Confidence 9998766 567999999983 33457788888 999999 99775
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=102.78 Aligned_cols=161 Identities=10% Similarity=0.006 Sum_probs=98.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC-Cc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg-Gy 695 (818)
++.+|++-.. .+..|....+ ++++ ||+++|+||+|. +|..- ..... . |++ +++|.+|. |
T Consensus 142 ~t~~v~~~~~-~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~~--~~~~~--~--d~~~~s~~K~~g~~G- 203 (362)
T 2c0r_A 142 NAAYLHLTSN-ETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSRP--FDLNQ--F--GLVYAGAQKNLGPSG- 203 (362)
T ss_dssp TEEEEEEESE-ETTTTEECSS---CCCC------TTSCEEEECTTT-TTSSC--CCGGG--C--SEEEEETTTTTCCSS-
T ss_pred CcCEEEEeCC-cCccceeccc---cccc------CCCEEEEEChhh-ccCCc--cchhH--C--cEEEEeccccccCcC-
Confidence 5666666654 6777875332 3333 899999999994 43211 11111 2 765 68999862 3
Q ss_pred cccceeecchHHHhhccCC------------------hH-------------HHH----------------HHHHHHHHc
Q 003466 696 IPLAATLATNAVFDSFVGD------------------SK-------------LWD----------------LELIQQISS 728 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~~~------------------~~-------------~~~----------------~~l~~~l~~ 728 (818)
+|.+++++++++.+... .. .+. +.+.+.+++
T Consensus 204 --~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 281 (362)
T 2c0r_A 204 --VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ 281 (362)
T ss_dssp --CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888887655320 00 001 112334455
Q ss_pred CCCeeEE-----EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHH
Q 003466 729 HRTVQRV-----VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLK 800 (818)
Q Consensus 729 ~~~v~~v-----rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~ 800 (818)
++.+..+ ...+.++.+.+... ..+..+++.|.++||.+.++ .+.+|++....+|++|+++++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~ 353 (362)
T 2c0r_A 282 SGGFYRGCVDVDSRSDMNITFRLASE--------ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQF 353 (362)
T ss_dssp STTSSEESSCGGGBCSSEEEEECSCH--------HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred cCCccccCCChHHcCCcEEEEEcCCc--------chHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5411011 11233444444211 34667888999999988763 24699999888899999999999
Q ss_pred HHHHHHH
Q 003466 801 LYQRLEE 807 (818)
Q Consensus 801 l~~~l~~ 807 (818)
|++.+++
T Consensus 354 l~~~~~~ 360 (362)
T 2c0r_A 354 MEHFKRS 360 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888754
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=8.8e-08 Score=96.05 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+.+.+.+.++.++ ||++||++.+++. .....+....+. +|+|+.....+ ..+...++.+
T Consensus 63 ~~l~~~l~~l~~~-------------yD~viiD~~~~~~------~~~~~~l~~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 63 EKDVYGIRKDLAD-------------YDFAIVDGAGSLS------VITSAAVMVSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp HHHHHTHHHHTTT-------------SSEEEEECCSSSS------HHHHHHHHHCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-------------CCEEEEECCCCCC------HHHHHHHHHCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 4555556665444 9999999987652 233344444443 88888888888 8888888888
Q ss_pred HhC-----CCcEEEEEEccCCCC--CHHHHHHhhcC-CCCEE-e-cCCCCC
Q 003466 275 KLR-----GYDVVAVVFEDHGLV--NEVPLMSYLRN-RVPVL-V-LPPLPQ 315 (818)
Q Consensus 275 ~~~-----~~~v~gvi~N~~~~~--~~~~l~~~~~~-~~pvl-g-iP~~~~ 315 (818)
+.. +.++ |+|+|++... ..+.+++.++. +.|++ + ||+.+.
T Consensus 122 ~~~~~~~~~~~~-~vv~N~~~~~~~~~~~~~~~l~~~~~~vl~~~Ip~~~~ 171 (206)
T 4dzz_A 122 LEAQAYSRKVEA-RFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQV 171 (206)
T ss_dssp HTTSCGGGCCEE-EEEECSBCTTEEEEHHHHHHHHHHTCCBCSSCCBCCHH
T ss_pred HHHHHhCCCCcE-EEEEeccCCCchHHHHHHHHHHHcCCceeeccccccHH
Confidence 753 3566 9999998432 12333333332 89998 6 887654
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.5e-07 Score=93.13 Aligned_cols=103 Identities=10% Similarity=0.091 Sum_probs=73.7
Q ss_pred CCChhHHHHHHHHHHh-ccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHH
Q 003466 191 VVGDSKVIETLGKCLR-DGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269 (818)
Q Consensus 191 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~ 269 (818)
.+..+.+.+.++.+.+ . ||+|||.+.+|+.. ....+.. .--.||+|+.....++.++..
T Consensus 96 ~~~~~~~~~~l~~l~~~~-------------yD~viiD~p~~~~~------~~~~~l~-~ad~vi~v~~~~~~s~~~~~~ 155 (260)
T 3q9l_A 96 ALTREGVAKVLDDLKAMD-------------FEFIVCDSPAGIET------GALMALY-FADEAIITTNPEVSSVRDSDR 155 (260)
T ss_dssp SSCHHHHHHHHHHHHHTT-------------CSEEEEECCSSSSH------HHHHHHH-TCSEEEEEECSSHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhccC-------------CCEEEEcCCCCCCH------HHHHHHH-hCCEEEEEecCChhHHHHHHH
Confidence 3556677777777765 5 99999999775532 1222222 223488999999999999999
Q ss_pred HHHHHHhCCC--------cEEEEEEccCC------CC--CHHHHHHhhcCCCCEEe-cCCCCC
Q 003466 270 AYESLKLRGY--------DVVAVVFEDHG------LV--NEVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 270 ~~~~l~~~~~--------~v~gvi~N~~~------~~--~~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
.++.++..+. ...|+|+|++. .. ..+.+++.+ ++|+++ ||+.+.
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~ 216 (260)
T 3q9l_A 156 ILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEIL--RIKLVGVIPEDQS 216 (260)
T ss_dssp HHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHH--CSEEEEEEECCHH
T ss_pred HHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHh--CCceEEecCCChh
Confidence 9998876542 47899999972 11 236677777 999999 998765
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.3e-07 Score=94.58 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHH
Q 003466 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (818)
Q Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (818)
.+.+.+.++.+.+. ||+|||.+..++.+. ....+++..+. +|+|+..+...+.++..+++.
T Consensus 188 ~~~l~~ll~~l~~~-------------yD~VIIDtpp~~~~~-----da~~l~~~aD~-vllVv~~~~~~~~~~~~~~~~ 248 (286)
T 3la6_A 188 SERFAELVNWASKN-------------YDLVLIDTPPILAVT-----DAAIVGRHVGT-TLMVARYAVNTLKEVETSLSR 248 (286)
T ss_dssp SHHHHHHHHHHHHH-------------CSEEEEECCCTTTCT-----HHHHHTTTCSE-EEEEEETTTSBHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-------------CCEEEEcCCCCcchH-----HHHHHHHHCCe-EEEEEeCCCCcHHHHHHHHHH
Confidence 35666677776655 999999996543321 23445555544 889999999999999999999
Q ss_pred HHhCCCcEEEEEEccCC
Q 003466 274 LKLRGYDVVAVVFEDHG 290 (818)
Q Consensus 274 l~~~~~~v~gvi~N~~~ 290 (818)
++..|.++.|+|+|++.
T Consensus 249 l~~~g~~~~GvVlN~v~ 265 (286)
T 3la6_A 249 FEQNGIPVKGVILNSIF 265 (286)
T ss_dssp HHHTTCCCCEEEEEEEC
T ss_pred HHhCCCCEEEEEEcCcc
Confidence 99999999999999984
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-07 Score=103.04 Aligned_cols=172 Identities=9% Similarity=0.086 Sum_probs=99.3
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchhcc-cCCCCcE---EEeccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADL-LGCVPDI---ACYGKL 690 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~e~-~gv~PDi---vtlgKg 690 (818)
.+...++.-+- ++-.|... +.+.+++|.++|+++++++|+||++.||.--+. .+.... .+..+.+ ..|||.
T Consensus 189 ~~~~vll~~~p-~NPtG~~~-~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 266 (420)
T 4h51_A 189 DGSVFILHQCA-HNPTGVDP-SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKN 266 (420)
T ss_dssp SSCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred CCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccc
Confidence 34445565542 77778766 899999999999999999999999999953322 111111 1112222 379997
Q ss_pred cc-CCccccceeecchHHHh-------hc-------cCC--hH----------------HHH--------------HHHH
Q 003466 691 LT-GGVIPLAATLATNAVFD-------SF-------VGD--SK----------------LWD--------------LELI 723 (818)
Q Consensus 691 Lg-gGy~PlsAvl~~~~i~~-------~l-------~~~--~~----------------~~~--------------~~l~ 723 (818)
++ -| .-+|++++..+..+ .+ ... .. .|. +.+.
T Consensus 267 ~~~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~ 345 (420)
T 4h51_A 267 MGLYS-ERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVY 345 (420)
T ss_dssp SCCGG-GCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-CceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 24 56777665322111 11 000 00 111 1223
Q ss_pred HHHHcCCCeeE----EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHH
Q 003466 724 QQISSHRTVQR----VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 724 ~~l~~~~~v~~----vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~ 799 (818)
+.|++.....+ ....|++.-+.+.. +.++.|.++||++.++| ||... .++++.|+++++
T Consensus 346 ~~L~~~g~~~~~~~i~~q~GmF~~~gls~-------------e~v~~L~e~~Vy~~~~g---Ris~A-gl~~~ni~~~a~ 408 (420)
T 4h51_A 346 DELLRLQTPGSWEHVINQIGMFSFLGLSK-------------AQCEYCQNHNIFITVSG---RANMA-GLTHETALMLAQ 408 (420)
T ss_dssp HHHHHTTCSSCCTHHHHCCSSEEECCCCH-------------HHHHHHHHTTEECCTTC---EEEGG-GCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCCeecCCCceEEecCcCH-------------HHHHHHHhCCEEEcCCC---EEEec-cCCHHHHHHHHH
Confidence 34444332111 22346543222211 23467889999998866 55553 378899999999
Q ss_pred HHHHHHHHHH
Q 003466 800 KLYQRLEEFD 809 (818)
Q Consensus 800 ~l~~~l~~l~ 809 (818)
+|.++++++.
T Consensus 409 aI~~vvr~i~ 418 (420)
T 4h51_A 409 TINDAVRNVN 418 (420)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 9999988765
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=98.55 Aligned_cols=181 Identities=12% Similarity=0.125 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchhccc
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~e~~ 678 (818)
+.+++.+.+ ..+..++++-|-.++-.|... +.+.+++|.++|++||+++|.||++.+|...+. ......+
T Consensus 162 ~~l~~~l~~------~~~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~ 234 (405)
T 3k7y_A 162 DLFLNDLRN------IPNGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKF 234 (405)
T ss_dssp HHHHHHHHH------SCSSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHH
T ss_pred HHHHHHHHh------CCCCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHH
Confidence 556666653 123346666542367788766 899999999999999999999999998843221 1111111
Q ss_pred -CCCCcE---EEeccccc-CCccccceeec---chHHHhhcc------------CC-hH-------H---------HHH-
Q 003466 679 -GCVPDI---ACYGKLLT-GGVIPLAATLA---TNAVFDSFV------------GD-SK-------L---------WDL- 720 (818)
Q Consensus 679 -gv~PDi---vtlgKgLg-gGy~PlsAvl~---~~~i~~~l~------------~~-~~-------~---------~~~- 720 (818)
...+.+ -+|||.++ .| +-+|.+++ ++++++.+. .. .. . |.+
T Consensus 235 ~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~ 313 (405)
T 3k7y_A 235 EEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKE 313 (405)
T ss_dssp HTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHH
Confidence 222333 38999998 67 68888643 454433221 00 00 0 111
Q ss_pred -------------HHHHHHH----cCCC---eeEEEeeeeEEEE-EEecCcccCCCchHHHHHHHHHHHhCCceEeecCC
Q 003466 721 -------------ELIQQIS----SHRT---VQRVVALGTLCAI-ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGN 779 (818)
Q Consensus 721 -------------~l~~~l~----~~~~---v~~vrg~Gl~~~i-el~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~ 779 (818)
.+.+.|+ +++. ...+...|-|+.+ .+.. .++.+|.++||++.|++
T Consensus 314 l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-------------~~~~~L~~~gV~v~p~~- 379 (405)
T 3k7y_A 314 LSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-------------KIAEHLKTHHIYIINNG- 379 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-------------GGTTTTTTTTEECCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-------------HHHHHHHHCCEeecCCC-
Confidence 1223344 4432 1112233443322 1111 23455678899999976
Q ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 780 VIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 780 ~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
||+.. ..++++|++++++|.+++++
T Consensus 380 --Ris~a-~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 380 --RINVS-GITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp --EEEGG-GCCTTHHHHHHHHHHHHHHC
T ss_pred --eEEEe-ccCHHHHHHHHHHHHHHHhh
Confidence 55553 35678999999999998764
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=6e-07 Score=96.61 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+.+.+.++.+.++ ||+|||+++.++.+ ....++...--.+|+|+..+...+.++..+++.+
T Consensus 201 ~~l~~ll~~l~~~-------------yD~VIIDtpp~~~~------~d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l 261 (299)
T 3cio_A 201 DRMRQLLEWANDH-------------YDLVIVDTPPMLAV------SDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRL 261 (299)
T ss_dssp HHHHHHHHHHHHH-------------CSEEEEECCCTTTC------THHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------------CCEEEEcCCCCchh------HHHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHH
Confidence 4566666666655 99999999876543 1222333333458899999999999999999999
Q ss_pred HhCCCcEEEEEEccCC
Q 003466 275 KLRGYDVVAVVFEDHG 290 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~~ 290 (818)
+..+.++.|+|+|++.
T Consensus 262 ~~~~~~~~GvVlN~~~ 277 (299)
T 3cio_A 262 EQAGVNIKGAILNGVI 277 (299)
T ss_dssp HHTTCCCCCEEEEECC
T ss_pred HhCCCCeEEEEEeCCc
Confidence 9999999999999983
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=93.18 Aligned_cols=78 Identities=10% Similarity=0.001 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+.+.+.++.+.++ ||+|||.+..++.+. ....+++..+ -+|+|+..+...+.++..+++.+
T Consensus 179 ~~l~~ll~~l~~~-------------yD~VIIDtpp~~~~~-----d~~~l~~~aD-~vilVv~~~~~~~~~~~~~~~~l 239 (271)
T 3bfv_A 179 RAFANLYDTLLMN-------------YNFVIIDTPPVNTVT-----DAQLFSKFTG-NVVYVVNSENNNKDEVKKGKELI 239 (271)
T ss_dssp HHHHHHHHHHHHH-------------CSEEEEECCCTTTCS-----HHHHHHHHHC-EEEEEEETTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------------CCEEEEeCCCCchHH-----HHHHHHHHCC-EEEEEEeCCCCcHHHHHHHHHHH
Confidence 4556666666555 999999997654332 2344555555 48999999999999999999999
Q ss_pred HhCCCcEEEEEEccCCC
Q 003466 275 KLRGYDVVAVVFEDHGL 291 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~~~ 291 (818)
+..+.++.|+|+|++..
T Consensus 240 ~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 240 EATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HTTTCEEEEEEEEEECC
T ss_pred HhCCCCEEEEEEeCCcC
Confidence 99899999999999843
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-07 Score=106.41 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=36.7
Q ss_pred CCeEEEE-eCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 37 HPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 37 ~~~~~i~-gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
+|.|||+ ||.|++||++++++|||.|. ++|++|.+||+-
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~-----~~g~~v~~~k~~ 42 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILE-----ARGLNVTIMKLD 42 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEEE
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeeeecc
Confidence 5789999 99999999999999999994 999999999984
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-06 Score=102.53 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+..+.+.|.++||.+... .+.+++..+...|++++++++++|.+..+.++
T Consensus 556 ~~~l~~~L~~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 556 AALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp HHHHHHHHHTTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 456778888999998754 48899999999999999999999988876653
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=91.84 Aligned_cols=90 Identities=6% Similarity=-0.094 Sum_probs=56.2
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCC--cEEEEEEccCC-CCCHHH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY--DVVAVVFEDHG-LVNEVP 296 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~--~v~gvi~N~~~-~~~~~~ 296 (818)
.||+|||.+..++.. .........+ -||+|+.....++..+...++.++..+. ++ ++|+|++. ......
T Consensus 144 ~yD~viiD~pp~~~~------~~~~~l~~aD-~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~~~~~~~~~ 215 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV------TLKNALLCSD-YVIIPMTAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRFKKNRTHKT 215 (267)
T ss_dssp TCSEEEEEECSSCSH------HHHHHHTTCS-EEEEEEESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEECTTCSCCH
T ss_pred CCCEEEEECcCCccH------HHHHHHHHCC-eEEEEeCCChHHHHHHHHHHHHHHHHhccCCE-EEEEecccCcchHHH
Confidence 399999999765421 1222222222 3778888888888888888888886643 44 69999982 222334
Q ss_pred HHHhhcCCCCEEe-cCCCCCCC
Q 003466 297 LMSYLRNRVPVLV-LPPLPQDS 317 (818)
Q Consensus 297 l~~~~~~~~pvlg-iP~~~~~~ 317 (818)
+.+.++.+.|+++ ||+.+.+.
T Consensus 216 ~~~~l~~~~~~~~~Ip~~~~~~ 237 (267)
T 3k9g_A 216 LFEILKTKDRFLGTISEREDLN 237 (267)
T ss_dssp HHHHHTTSTTEEEEEEC-----
T ss_pred HHHHHhcCcccceecCcHHHHH
Confidence 4455544789999 99987765
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=9.9e-07 Score=105.39 Aligned_cols=165 Identities=17% Similarity=0.184 Sum_probs=98.4
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEEeCCh-hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f~~SG-seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
..+..++++++++++|. ++++|+++| +.||.+++... .++.+.|..+...|.+.
T Consensus 194 ~g~i~eaE~~lA~~fGa---~~a~~v~nGts~An~~ai~al----------------------~~pGD~VLv~r~~H~S~ 248 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNA---DRSYMVTNGTSTANKIVGMYS----------------------APAGSTILIDRNCHKSL 248 (715)
T ss_dssp BTHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHH----------------------CCTTCEEEEESSCCHHH
T ss_pred cHHHHHHHHHHHHHhCC---CCceEECcHHHHHHHHHHHHh----------------------CCCCCEEEECCCccHHH
Confidence 45788999999999984 688888888 59998888866 12234566777788888
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccccccc-CccchhhcccCchhHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFC-SRDEIFYEERDSSDLASI 599 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~n-d~~~~~~~~~~~~~~~~~ 599 (818)
..++.++|.....- ++. . + .+.+ + ++ +. ..+ |
T Consensus 249 ~~~l~lsGa~pv~v--------------~~~-~---~-~~gi--~--------------~~i~~-~~~----d------- 281 (715)
T 3n75_A 249 THLMMMSDVTPIYF--------------RPT-R---N-AYGI--L--------------GGIPQ-SEF----Q------- 281 (715)
T ss_dssp HHHHHHSCCEEEEE--------------CCC-B---C-TTCC--B--------------CCCCG-GGG----S-------
T ss_pred HHHHHHcCCEEEEE--------------ecc-c---c-cccc--c--------------cCccc-ccC----C-------
Confidence 88777776432110 000 0 0 0000 0 00 00 000 0
Q ss_pred HHHHHHHHHhcCCCCCCCC-c--EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-h
Q 003466 600 YSSYISQNLLQNPGLKVSG-C--IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-A 675 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~-~--iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~ 675 (818)
.+.|++.|++. ++ + .+.|++.| +..|.+.+ +++|.++|++++ +|+||+|.+.-..|..+. .
T Consensus 282 -~e~Le~~l~~~-----~~~k~p~~vivt~p---n~~G~v~d----l~~I~ela~~~~--livDEAH~~~~~f~~~~~~~ 346 (715)
T 3n75_A 282 -HATIAKRVKET-----PNATWPVHAVITNS---TYDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGK 346 (715)
T ss_dssp -HHHHHHHHHHS-----TTCCSCSEEEEESS---CTTSEEEC----HHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTS
T ss_pred -HHHHHHHHhhC-----cCccCceEEEEECC---CCCCccCC----HHHHHHHhCcCc--EEEccccccccccCCccccc
Confidence 25677788641 21 1 15677777 34677776 889999998774 799999963212333321 1
Q ss_pred c--ccCCCCcEE-----EecccccC
Q 003466 676 D--LLGCVPDIA-----CYGKLLTG 693 (818)
Q Consensus 676 e--~~gv~PDiv-----tlgKgLgg 693 (818)
. ..|..+|++ +++|+|+|
T Consensus 347 ~al~~g~~aD~vii~~~S~hKtL~g 371 (715)
T 3n75_A 347 CGMSGGRVEGKVIYETQSTHKLLAA 371 (715)
T ss_dssp STTSSSCCTTCEEEEEECHHHHSSC
T ss_pred cccccCcCCCEEEEEEecccccccC
Confidence 1 122236753 68999886
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=100.89 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCeEEEE-eCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 36 SHPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 36 ~~~~~~i~-gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
|+|.|||+ ||.|++||++++++|||.|+ ++|++|.+||+-
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~-----~~g~~v~~~k~~ 51 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLR-----ARGYRVTAIKID 51 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEEE
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeEeecc
Confidence 56899999 99999999999999999994 999999999983
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-05 Score=89.88 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=32.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
...++|+|. +|+||||++..|+.+|. ++|++|..+.
T Consensus 100 p~vIlivG~-~G~GKTTt~~kLA~~l~-----~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGI-QGSGKTTTVAKLARYFQ-----KRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CeEEEEECc-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 457899998 99999999999999994 7899998876
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-06 Score=93.16 Aligned_cols=64 Identities=17% Similarity=0.020 Sum_probs=50.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---C----------H---HHHHHhhcCCCCEEe-cCCC
Q 003466 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---N----------E---VPLMSYLRNRVPVLV-LPPL 313 (818)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~---~----------~---~~l~~~~~~~~pvlg-iP~~ 313 (818)
..+++|+.....++.++..+++.++..|+++.|||+|++... . . +.+.+.+ +.+.++ ||+.
T Consensus 238 ~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~l~~iPl~ 315 (349)
T 3ug7_A 238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKF--GDKVIAYVPLL 315 (349)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHS--TTSEEEEEECC
T ss_pred ceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHc--CCCcEEEecCC
Confidence 448999999999999999999999999999999999998322 1 1 1222233 788888 9998
Q ss_pred CCC
Q 003466 314 PQD 316 (818)
Q Consensus 314 ~~~ 316 (818)
+..
T Consensus 316 ~~e 318 (349)
T 3ug7_A 316 RTE 318 (349)
T ss_dssp SSC
T ss_pred CCC
Confidence 763
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=6.7e-07 Score=105.08 Aligned_cols=95 Identities=11% Similarity=0.001 Sum_probs=64.8
Q ss_pred CCCEEEEeCCCCCCCc----------------CCCCCchhhHhhhC----CCCEEEEEcCCCChHHHHHHHHHHHHhCCC
Q 003466 220 MEILCIVETAGGVASP----------------GPSGSLQCDLYRPF----RLPGILVGDGRLGGISGTISAYESLKLRGY 279 (818)
Q Consensus 220 ~~d~vivEGagg~~~p----------------~~~~~~~~dla~~l----~~pvilV~~~~~g~i~~~~~~~~~l~~~~~ 279 (818)
.||+|||+++++..++ ..+.....++...+ ...+|+|+.....+++++..+++.++..|+
T Consensus 440 ~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~ 519 (589)
T 1ihu_A 440 GKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGI 519 (589)
T ss_dssp GTSEEEESCCCCHHHHHHHHHC------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCC
Confidence 4999999999874321 00000123333333 257999999999999999999999999999
Q ss_pred cEEEEEEccCCCC---C--------------HHHHHHhhcCCCCEEecCCCCCC
Q 003466 280 DVVAVVFEDHGLV---N--------------EVPLMSYLRNRVPVLVLPPLPQD 316 (818)
Q Consensus 280 ~v~gvi~N~~~~~---~--------------~~~l~~~~~~~~pvlgiP~~~~~ 316 (818)
++.|||+|++... . .+.|++.+ +.||.-||+++..
T Consensus 520 ~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~iP~~~~e 571 (589)
T 1ihu_A 520 HPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQH--ASRVALVPVLASE 571 (589)
T ss_dssp CCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTT--CSSEEEEECCSSC
T ss_pred CCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc--CCcEEEccCCCCC
Confidence 9999999998322 1 22233334 7788339998763
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-06 Score=93.73 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--C--------------HHHHHHhhcCCCCEEe-cCCC
Q 003466 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--N--------------EVPLMSYLRNRVPVLV-LPPL 313 (818)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~--~--------------~~~l~~~~~~~~pvlg-iP~~ 313 (818)
..+|+|+.....++.++..+++.++..|+++.|||+|++... . .+.+.+.+ +.+.++ ||+.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~~~~iPl~ 300 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKF--SDKVVAEVPLL 300 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHT--TTSEEEEEECC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHc--CCCcEEEecCC
Confidence 468999999999999999999999999999999999998322 1 11222333 666777 9987
Q ss_pred CCC
Q 003466 314 PQD 316 (818)
Q Consensus 314 ~~~ 316 (818)
+..
T Consensus 301 ~~e 303 (324)
T 3zq6_A 301 KKE 303 (324)
T ss_dssp SSC
T ss_pred CCC
Confidence 763
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.8e-06 Score=85.89 Aligned_cols=87 Identities=8% Similarity=0.060 Sum_probs=56.7
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh------CCCcEEEEEEccCCCCC
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL------RGYDVVAVVFEDHGLVN 293 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~------~~~~v~gvi~N~~~~~~ 293 (818)
.||+|||.+.+++... ........+ .||+|+.....++.++...++.++. .++++.|+|+|++....
T Consensus 111 ~yD~iiiD~pp~~~~~------~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSPL------TLNALAAAE-GVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TCSEEEEECCSSCCHH------HHHHHHHCS-EEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred CCCEEEEeCCCCCCHH------HHHHHHHCC-eEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 4999999998765322 222333322 4888888888887776666555542 36788999999984322
Q ss_pred ------HHHHHHhhcCCCCEE-e-cCCCCC
Q 003466 294 ------EVPLMSYLRNRVPVL-V-LPPLPQ 315 (818)
Q Consensus 294 ------~~~l~~~~~~~~pvl-g-iP~~~~ 315 (818)
.+.+++.+ +.|++ + ||+...
T Consensus 184 ~~~~~~~~~l~~~~--~~~~~~~~Ip~~~~ 211 (257)
T 1wcv_1 184 LLAQQVEAQLRAHF--GEKVFWTVIPRNVR 211 (257)
T ss_dssp SHHHHHHHHHHHHH--GGGBCSCCCBCCHH
T ss_pred HHHHHHHHHHHHHc--cccccCccCCCcHH
Confidence 23455555 78876 6 886543
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=5.2e-06 Score=85.35 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=68.4
Q ss_pred HHHHHHHHH-HhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 196 KVIETLGKC-LRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 196 ~i~~~~~~~-~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
.+.+.++.+ .+. ||+|||.+.+++.. ....+....+ -||+|+.....++..+....+.+
T Consensus 119 ~l~~~l~~l~~~~-------------yD~viiD~pp~~~~------~~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~~ 178 (254)
T 3kjh_A 119 FLGSVVSALFLDK-------------KEAVVMDMGAGIEH------LTRGTAKAVD-MMIAVIEPNLNSIKTGLNIEKLA 178 (254)
T ss_dssp HHHHHHHHHHHTC-------------CSEEEEEECTTCTT------CCHHHHTTCS-EEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-------------CCEEEEeCCCcccH------HHHHHHHHCC-EEEEecCCCHHHHHHHHHHHHHH
Confidence 466666666 433 99999999775533 1222222222 37888888888888888888888
Q ss_pred HhCCCcEEEEEEccCC-CCCHHHHHHhhcCCCCEEe-cCCCCC
Q 003466 275 KLRGYDVVAVVFEDHG-LVNEVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~~-~~~~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
...++...++|+|++. ....+.+++.+. +.++.+ ||+.+.
T Consensus 179 ~~~~~~~~~~v~N~~~~~~~~~~~~~~~~-~~~~~~~Ip~~~~ 220 (254)
T 3kjh_A 179 GDLGIKKVRYVINKVRNIKEEKLIKKHLP-EDKILGIIPYNEL 220 (254)
T ss_dssp HHHTCSCEEEEEEEECCHHHHHHHHHHSC-GGGEEEEEECCHH
T ss_pred HHcCCccEEEEEeCCCChhHHHHHHHHhc-CCcccccccCcHH
Confidence 8888888999999984 233455666662 388999 998643
|
| >2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.8e-05 Score=84.67 Aligned_cols=38 Identities=13% Similarity=-0.031 Sum_probs=36.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003466 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (818)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (818)
+++|+.....++.++..+++.++..|+++.|+|+|++.
T Consensus 224 ~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~ 261 (329)
T 2woo_A 224 FVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLL 261 (329)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEC
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence 99999999999999999999999999999999999984
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.3e-05 Score=87.06 Aligned_cols=196 Identities=11% Similarity=0.038 Sum_probs=112.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcc--cC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL--LG 679 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~--~g 679 (818)
+.+++.|++ .+.+.+++|++.|-. -.++...+ +++|.++|++||+++++||+|-+.-+....+..+. +|
T Consensus 203 e~le~aI~e----~ga~~i~~V~~Ttt~-y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~G 273 (501)
T 3hl2_A 203 KAVEAKVQE----LGPDCILCIHSTTSC-FAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG 273 (501)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEECSC-CTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh----cCCCcEEEEEecCCC-CCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcC
Confidence 667788874 234788999888742 22333333 99999999999999999999944322222211122 34
Q ss_pred CCCcEEEecccccCCccccceeec---chHHHhhccC-------ChH----------------------------HHHHH
Q 003466 680 CVPDIACYGKLLTGGVIPLAATLA---TNAVFDSFVG-------DSK----------------------------LWDLE 721 (818)
Q Consensus 680 v~PDivtlgKgLggGy~PlsAvl~---~~~i~~~l~~-------~~~----------------------------~~~~~ 721 (818)
..|+++.|=== .++.|++..++ ++++++.+.. .+. ++.++
T Consensus 274 -rAD~vVqS~HK-~llvpIGG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~ 351 (501)
T 3hl2_A 274 -RIDAFVQSLDK-NFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQ 351 (501)
T ss_dssp -CCCEEEEEHHH-HHCCCSSCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcEEEecccc-cceeecCceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58998876200 13556555332 4555554321 111 11111
Q ss_pred HHHHHHcCC-CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe---e--------------cC-----
Q 003466 722 LIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR---P--------------LG----- 778 (818)
Q Consensus 722 l~~~l~~~~-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~---p--------------~g----- 778 (818)
+.+....++ .+-+....-.-+++.+...... .......+...|+.++|--. + .|
T Consensus 352 L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~---~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~ 428 (501)
T 3hl2_A 352 IKKLSEAYNERLLHTPHNPISLAMTLKTLDEH---RDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNN 428 (501)
T ss_dssp HHHHHHTTTCCBCCCTTCSSEEEEECTTSCTT---TSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSC
T ss_pred HHHHHHhcChhhcCCCCCceeEEEeccccccc---ccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCC
Confidence 222222233 2334444455566666443111 11234567777887766321 1 01
Q ss_pred ---CEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 779 ---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 779 ---~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
+-+......-++++|||.++++|++++.++.+.
T Consensus 429 ~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 429 YPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp CSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777899999999999999999988643
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.08 E-value=9.2e-06 Score=85.08 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=59.5
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCC-CH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLV-NE 294 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~-~~ 294 (818)
.||+|||.+.+++.. +.....++...---||+|+.....++..+...++.++. .+.++.|+|+|++... ..
T Consensus 115 ~yD~iiiD~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 190 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVC----GGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY 190 (269)
T ss_dssp TCSEEEEEEECSSCS----TTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH
T ss_pred CCCEEEEeCCchhhh----hhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhH
Confidence 499999999765422 11222233333345889999888888887776666653 2577899999998322 22
Q ss_pred ---HHHHHhhcCCCCEEe-cCCCCC
Q 003466 295 ---VPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 295 ---~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
+.+.+.+ +.|+++ ||+.+.
T Consensus 191 ~~~~~l~~~~--~~~v~~~Ip~~~~ 213 (269)
T 1cp2_A 191 ELLDAFAKEL--GSQLIHFVPRSPM 213 (269)
T ss_dssp HHHHHHHHHH--TCCEEEEECCCHH
T ss_pred HHHHHHHHHc--CCcccccCCCCcH
Confidence 3344445 899999 997754
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=98.05 E-value=8e-06 Score=86.92 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|++.|.|+++..|+||||+|+.|..+|. ++|++|..+.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La-----~~G~~VlliD 40 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALL-----YGGAKVAVID 40 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 4568999999999999999999999994 7899999876
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.4e-05 Score=76.19 Aligned_cols=88 Identities=7% Similarity=-0.022 Sum_probs=59.8
Q ss_pred CCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh-CCCcEEEEEEccCCCCC---HHH
Q 003466 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL-RGYDVVAVVFEDHGLVN---EVP 296 (818)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~-~~~~v~gvi~N~~~~~~---~~~ 296 (818)
||++||.+.+++..+ ....+....+ -||+|+.....++..+...++.++. .+.+ .++|+|++.... .+.
T Consensus 68 yD~viiD~p~~~~~~-----~~~~~l~~aD-~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE-----DLEALADGCD-LLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSKDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS-----HHHHHHHTSS-EEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSCHHHH
T ss_pred CCEEEEeCCCCcCcH-----HHHHHHHHCC-EEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccchHHHH
Confidence 999999998763322 2223333333 3778888888899999999999887 4566 789999994432 233
Q ss_pred HHHhhcC-CCCEE-e-cCCCCC
Q 003466 297 LMSYLRN-RVPVL-V-LPPLPQ 315 (818)
Q Consensus 297 l~~~~~~-~~pvl-g-iP~~~~ 315 (818)
+.+.++. ++|++ + ||+.+.
T Consensus 141 ~~~~l~~~g~~v~~~~Ip~~~~ 162 (209)
T 3cwq_A 141 ARQLLTTAGLPLFKRGIKRYSA 162 (209)
T ss_dssp HHHHHHHTTCCBCSSCCBCCTH
T ss_pred HHHHHHHcCCchhhccCCCcHH
Confidence 4443332 88988 6 887654
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.4e-05 Score=81.89 Aligned_cols=90 Identities=9% Similarity=0.074 Sum_probs=57.4
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCCC--
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLVN-- 293 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~~-- 293 (818)
.||+|||.+.|++.. +.....++...---||+|+.....++..+...++.++. .+.++.|+|+|++....
T Consensus 118 ~yD~ViID~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 193 (289)
T 2afh_E 118 DLDFVFYDVLGDVVC----GGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRED 193 (289)
T ss_dssp TCSEEEEEEECSSCC----TTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHH
T ss_pred CCCEEEEeCCCcccc----chhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHH
Confidence 499999999765421 11111222222223788888887788777666666653 36789999999984332
Q ss_pred --HHHHHHhhcCCCCEEe-cCCCCC
Q 003466 294 --EVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 294 --~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
.+.+.+.+ +.|+++ ||+.+.
T Consensus 194 ~~~~~l~~~~--g~~~l~~Ip~~~~ 216 (289)
T 2afh_E 194 ELIIALANKL--GTQMIHFVPRDNV 216 (289)
T ss_dssp HHHHHHHHHH--TSCEEEEECCCHH
T ss_pred HHHHHHHHHc--CccccccCCCchh
Confidence 22334444 899999 997654
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00011 Score=82.97 Aligned_cols=82 Identities=12% Similarity=-0.017 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (818)
+.++++|++. +.+.+++|++-|- ....|...+ +++|.++|++||++|++||++-++-+....+..+.+..
T Consensus 185 ~~le~aI~~~----~~~~~~~Vv~t~t-~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~ 255 (450)
T 3bc8_A 185 KAVEAKIQEL----GPEHILCLHSTTA-CFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 255 (450)
T ss_dssp HHHHHHHHHH----CGGGEEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhc----CCCCEEEEEEECC-cCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhccc
Confidence 6788888741 2257889999886 232344444 99999999999999999999954323221111111222
Q ss_pred CCcEEEec--cccc
Q 003466 681 VPDIACYG--KLLT 692 (818)
Q Consensus 681 ~PDivtlg--KgLg 692 (818)
..|+++++ |-+.
T Consensus 256 ~AD~~v~S~HK~l~ 269 (450)
T 3bc8_A 256 RIDAFVQSLDKNFM 269 (450)
T ss_dssp CCCEEEEEHHHHHS
T ss_pred CCCEEEECCccCCC
Confidence 47888776 5443
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00012 Score=82.74 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-CCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (818)
.+.++|+|. +|+||||+++.|+.+|. ++ |++|..+.
T Consensus 100 ~~vI~ivG~-~GvGKTT~a~~LA~~l~-----~~~G~kVllvd 136 (433)
T 2xxa_A 100 PAVVLMAGL-QGAGKTTSVGKLGKFLR-----EKHKKKVLVVS 136 (433)
T ss_dssp SEEEEEECS-TTSSHHHHHHHHHHHHH-----HTSCCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HhcCCeEEEEe
Confidence 457888886 89999999999999994 66 99999876
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=4.3e-05 Score=89.68 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=36.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003466 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (818)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (818)
+|+|+.....++.++..+++.++..|+++.|+|+|++.
T Consensus 201 vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 201 LVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred EEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
Confidence 89999999999999999999999999999999999984
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.7e-05 Score=82.35 Aligned_cols=65 Identities=14% Similarity=-0.072 Sum_probs=46.3
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+.++.|.+.... ++......+...+.++||.++++. ..+|++.....|++|||.++++|++.+++
T Consensus 307 ~~ivsf~~~~~~----~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 307 KMNIPFRIGNAK----GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp SSEEEEEESSTT----CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCC----CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 345667664321 111222457778889999987641 46999999899999999999999988754
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.3e-05 Score=84.34 Aligned_cols=47 Identities=9% Similarity=-0.154 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
..+...|.++||.++.+. ..+|++.....|++|||++++.|++..++
T Consensus 335 ~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 335 KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 356667889999987631 45999998889999999999999887654
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.7e-05 Score=81.07 Aligned_cols=88 Identities=10% Similarity=-0.062 Sum_probs=54.2
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh------CCCcEEEEEEccCCCCC
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL------RGYDVVAVVFEDHGLVN 293 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~------~~~~v~gvi~N~~~~~~ 293 (818)
.||+|||.+.+++.... ..-+ ... --||+|+.....++..+...++.++. .++++.|+|+|++....
T Consensus 154 ~yD~IiiD~pp~~~~~~-----~~~l-~~a-D~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVYT-----NNAI-VAS-DYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHHH-----HHHH-HHC-SEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHHH-----HHHH-HHC-CeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 39999999977653321 1112 121 23778888888888887777777654 37889999999985433
Q ss_pred ---HHHHHHhhcC-CC--CEEe--cCCCC
Q 003466 294 ---EVPLMSYLRN-RV--PVLV--LPPLP 314 (818)
Q Consensus 294 ---~~~l~~~~~~-~~--pvlg--iP~~~ 314 (818)
.+.+++..+. +. |++. ||+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~v~~~~Ip~~~ 255 (298)
T 2oze_A 227 ATIKSNLEELYKQHKEDNLVFQNIIKRSN 255 (298)
T ss_dssp HHHHHHHHHHHHHTTTTCCBCSSCEECCH
T ss_pred HHHHHHHHHHHHHhccccccccccccccH
Confidence 2233332221 43 6664 67554
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=81.36 Aligned_cols=162 Identities=13% Similarity=0.074 Sum_probs=89.7
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHh-cC--CcEEEeecccCcccCCccchhcccCCCCcEEEeccccc-CC
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GG 694 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~-~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg-gG 694 (818)
++.+|++... ++..|.+.. +||++ |+ +++|.||++. ++.. .... ...+..--+.+|||.+| .|
T Consensus 157 ~~k~v~l~~p-~NPtG~~~~---------~l~~~~~~~~~~ii~De~y~-~~~~-~~l~-~~~~~~i~~~S~SK~~g~~G 223 (391)
T 3bwn_A 157 GPYIELVTSP-NNPDGTIRE---------TVVNRPDDDEAKVIHDFAYY-WPHY-TPIT-RRQDHDIMLFTFSKITGHAG 223 (391)
T ss_dssp SCEEEEEESS-CTTTCCCCC---------CCC-----CCCEEEEECTTC-STTT-SCCC-CCBCCSEEEEEHHHHHSCGG
T ss_pred CCEEEEECCC-CCCCchhHH---------HHHHHhhcCCCEEEEeCCCC-CCCC-Cccc-cCCCCeEEEEechhhcCCCc
Confidence 3455555432 677787763 23444 66 9999999995 3211 1111 11222222348999987 56
Q ss_pred ccccceeec-chHHHhhccCCh--------H--------HHH---------------------------HHHHHHHHcCC
Q 003466 695 VIPLAATLA-TNAVFDSFVGDS--------K--------LWD---------------------------LELIQQISSHR 730 (818)
Q Consensus 695 y~PlsAvl~-~~~i~~~l~~~~--------~--------~~~---------------------------~~l~~~l~~~~ 730 (818)
+-+|.+++ ++++++.+.... . .+. +.+.+.|++++
T Consensus 224 -lRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 302 (391)
T 3bwn_A 224 -SRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESD 302 (391)
T ss_dssp -GCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred -cceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67788886 778766443210 0 111 11233445554
Q ss_pred CeeEE--------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec------CCEEEEECCCCCh
Q 003466 731 TVQRV--------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------GNVIYLMCGPCSS 790 (818)
Q Consensus 731 ~v~~v--------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------g~~ir~~ppl~~t 790 (818)
.+.-. ...|+++-+.+... ..+.+.|.++||.+.|+ .+.+|++.. .+
T Consensus 303 ~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~-----------~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~ 369 (391)
T 3bwn_A 303 AFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE-----------TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SR 369 (391)
T ss_dssp SEECCCCCCEEETTTTEEECCCCSEEEEEESSS-----------CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SC
T ss_pred CcccccCCccccccccccCCCcceEEEecCCcH-----------HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CC
Confidence 32111 12233444555321 13456677899999983 368999887 38
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003466 791 PEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 791 ~edId~~~~~l~~~l~~ 807 (818)
++++++++++|.+++++
T Consensus 370 ~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 370 EDVFNVFLERLANMKLI 386 (391)
T ss_dssp HHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999887654
|
| >3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00013 Score=80.86 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=51.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCCEEecCCCCCC
Q 003466 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQD 316 (818)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlgiP~~~~~ 316 (818)
.-++||+....-++..+..+++.++..|+++.|+|+|+ ++..+.|++.+. ++||..||..+..
T Consensus 215 t~~vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVvN~--~~~l~~i~~~F~-~~~v~~vpl~~~e 277 (374)
T 3igf_A 215 VAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVS--SQTEGDLSAEFT-PLSVTVVPDVTKG 277 (374)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEECC--CSCCCCCGGGST-TSCEEECCCCBTT
T ss_pred eEEEEEECCCccHHHHHHHHHHHHHHcCCCccEEEEcC--HHHHHHHHHhcC-CCceEECCCCChh
Confidence 45899999999999999999999999999999999999 333334444443 8999889987664
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0013 Score=72.44 Aligned_cols=46 Identities=11% Similarity=-0.088 Sum_probs=38.5
Q ss_pred HHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+...|.++||.++++. ..+|+.+....|++|||+++++|++..++
T Consensus 311 ~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 311 LFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp HHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 57788889999987641 46999999889999999999999887654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0005 Score=77.30 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+.|+|. +|+||||++..|+..+. .+|.+|..+.
T Consensus 97 ~~~vi~i~G~-~GsGKTT~~~~LA~~l~-----~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEee
Confidence 3456888887 89999999999999994 6788988876
|
| >2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0012 Score=72.47 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=36.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003466 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (818)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (818)
+|+|+.....++.++...++.++..|+++.|+|+|++.
T Consensus 238 ~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 89999999999999999999999999999999999985
|
| >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0017 Score=70.72 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=48.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CC---CH--------------HHHHHhhcCC-CCEEecCC
Q 003466 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LV---NE--------------VPLMSYLRNR-VPVLVLPP 312 (818)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~---~~--------------~~l~~~~~~~-~pvlgiP~ 312 (818)
-+++|+....-.+..+..+++.++..|+++.|||+|++. +. .. +.+.+.+. + +|+.-||+
T Consensus 224 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~-~~~~~~~~pl 302 (334)
T 3iqw_A 224 TFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYD-EEFNVVKMPL 302 (334)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEC
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhcc-CCCCEEEecC
Confidence 389999999999999999999999999999999999973 21 21 12222221 5 89888998
Q ss_pred CCC
Q 003466 313 LPQ 315 (818)
Q Consensus 313 ~~~ 315 (818)
.+.
T Consensus 303 ~~~ 305 (334)
T 3iqw_A 303 LVE 305 (334)
T ss_dssp CSS
T ss_pred CCC
Confidence 865
|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00055 Score=75.58 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.9
Q ss_pred CCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..++.|.|++.-.|+||||+|+.|+.+|. ++|++|..+=
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La-----~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA-----NMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHH-----HHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 45788999999999999999999999994 6799999876
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0069 Score=65.35 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=31.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|.|-|+| -.||||||+|.-|..+|. ++|+||..+=
T Consensus 48 aKVIAIaG-KGGVGKTTtavNLA~aLA-----~~GkkVllID 83 (314)
T 3fwy_A 48 AKVFAVYG-KGGIGKSTTSSNLSAAFS-----ILGKRVLQIG 83 (314)
T ss_dssp CEEEEEEC-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEEEC-CCccCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 46788988 789999999999999994 8899998876
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00082 Score=66.06 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=33.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+|+.+.|+| .+|+||||++..|++.|. ++|++|+.+|
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~-----~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAV-----REGWRVGTVK 39 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhH-----hcCCeeeEEE
Confidence 578899999 679999999999999994 7899999999
|
| >3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.005 Score=67.39 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=48.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-C----CHHH--------------HHHhhcCCCCEEecCC
Q 003466 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-V----NEVP--------------LMSYLRNRVPVLVLPP 312 (818)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~----~~~~--------------l~~~~~~~~pvlgiP~ 312 (818)
-+|+|+....-.+..+..+++.++..|+++.|+|+|++.. . ...+ |.+.+ .+.|+.-||+
T Consensus 233 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~-~~~~~~~~pl 311 (348)
T 3io3_A 233 TFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELY-EDYHLVKMPL 311 (348)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEC
T ss_pred EEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHc-cCCCEEEecC
Confidence 4899999999999999999999999999999999999832 1 1111 22222 1678888998
Q ss_pred CCC
Q 003466 313 LPQ 315 (818)
Q Consensus 313 ~~~ 315 (818)
.+.
T Consensus 312 ~~~ 314 (348)
T 3io3_A 312 LGC 314 (348)
T ss_dssp CSS
T ss_pred CCC
Confidence 775
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0032 Score=70.92 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
...++++|. +|+||||++..|+..|. ++|.+|...-
T Consensus 97 ~~vI~lvG~-~GsGKTTt~~kLA~~l~-----~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGV-QGSGKTTTAGKLAYFYK-----KRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 456888887 79999999999999994 7799988765
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0015 Score=73.32 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=33.8
Q ss_pred HHHHHHH-hCCceEeec------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLR-EDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 762 ~~~~~l~-e~Gvlv~p~------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.+++.|+ ++||+++|+ .+.+|++... ++++|++++++|.++++
T Consensus 374 ~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~--~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 374 KDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK--TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp CSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 3566665 889999983 3679998873 88899999999988764
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.004 Score=71.47 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.|+|. +|+||||++..|+.+|. ++|.+|...-
T Consensus 101 ~~vI~ivG~-~GvGKTTl~~kLA~~l~-----~~G~kVllVd 136 (504)
T 2j37_W 101 QNVIMFVGL-QGSGKTTTCSKLAYYYQ-----RKGWKTCLIC 136 (504)
T ss_dssp -EEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 457889998 79999999999999994 6799988775
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.023 Score=60.72 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+.|+|. +|+||||++..|+..+. . ++|++|.+.-
T Consensus 104 ~g~vi~lvG~-~GsGKTTl~~~LA~~l~---~-~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGS-TGAGKTTTLAKLAAISM---L-EKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEES-TTSSHHHHHHHHHHHHH---H-TTCCCEEEEE
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCEEEEEe
Confidence 3457999998 69999999999999994 1 3788888765
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.028 Score=60.68 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
.+.+.|+|. +|+||||++..|+..+. .+|.+|...
T Consensus 105 ~~vI~ivG~-~G~GKTT~~~~LA~~l~-----~~g~kVlli 139 (320)
T 1zu4_A 105 LNIFMLVGV-NGTGKTTSLAKMANYYA-----ELGYKVLIA 139 (320)
T ss_dssp CEEEEEESS-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEE
Confidence 457999998 99999999999999994 668888765
|
| >3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.029 Score=61.53 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=33.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|+.|.|++.-.|+||||+|+.|..+|. ++|++|...=
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA-----~~G~rVLlID 37 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFA-----LQGKRVLYVD 37 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHH-----hCCCcEEEEE
Confidence 678999999999999999999999994 7899998875
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.27 E-value=0.068 Score=57.04 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=29.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+.++|. +|+||||++..|+..+. .+|.+|...-
T Consensus 98 ~~vi~i~G~-~G~GKTT~~~~la~~~~-----~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGV-QGTGKTTTAGKLAYFYK-----KKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECS-SCSSTTHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 456788885 89999999999999994 6788887654
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.20 E-value=0.013 Score=65.88 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
...++|+|. +|+||||++..|+..+. ++|++|..+-
T Consensus 99 ~~vI~ivG~-~GvGKTTla~~La~~l~-----~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGI-QGSGKTTTAAKLARYIQ-----KRGLKPALIA 134 (432)
T ss_dssp CCCEEEECC-SSSSTTHHHHHHHHHHH-----HHHCCEEEEC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 357899997 89999999999999994 6788988776
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.033 Score=59.78 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.++|+|. +|+||||++..|+..+. .+|.+|...-
T Consensus 104 ~~vi~ivG~-~GsGKTTl~~~LA~~l~-----~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGV-NGTGKTTSCGKLAKMFV-----DEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEEcC-CCChHHHHHHHHHHHHH-----hcCCEEEEEc
Confidence 456899998 99999999999999994 5688877643
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.065 Score=57.08 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=29.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+.|+|. +|+||||++..|+..+. .+|.+|...-
T Consensus 97 ~~~~i~i~g~-~G~GKTT~~~~la~~~~-----~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECC-TTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 4557888885 79999999999999994 5677877653
|
| >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.014 Score=64.77 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=25.6
Q ss_pred CCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCC-CCCCCCceeEEc
Q 003466 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLK 78 (818)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~-~~~~g~~v~~~K 78 (818)
..++.|.|++.-.|+||||+|+.|..+|.... ..++|++|...=
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD 153 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 45788999999999999999999999993000 002588887765
|
| >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.044 Score=60.69 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=33.5
Q ss_pred CCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCC--CCCCCCceeEEc
Q 003466 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP--TSSANKKFVYLK 78 (818)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~--~~~~g~~v~~~K 78 (818)
.+++.|.|++.-.|+||||+|+.|..+|.... . ++|++|...=
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~-~~g~rVlliD 150 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLL-MEDLRILVID 150 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTG-GGCCCEEEEE
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhh-cCCCeEEEEe
Confidence 45788999999999999999999999993100 0 2588887765
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.51 Score=53.77 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
..+.|.|. +|+||||+...|+..+. ..+.+|.+.
T Consensus 294 eVI~LVGp-NGSGKTTLl~~LAgll~-----~~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGV-NGVGKTTTIGKLARQFE-----QQGKSVMLA 327 (503)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred eEEEEECC-CcccHHHHHHHHHHHhh-----hcCCeEEEe
Confidence 36889999 69999999999999984 556677654
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.69 Score=52.08 Aligned_cols=150 Identities=12% Similarity=0.080 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCCCCcEE--EecccccCCccccce-eecchH------------
Q 003466 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAA-TLATNA------------ 706 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsA-vl~~~~------------ 706 (818)
++++|++||+-|+.|++|=+|. |+ .-|..+- .-+.. .|++ |.=|.|.| |-|+ ++++++
T Consensus 220 ~~~~reIAd~vGA~Lm~DmAHiaGL-VA~g~~p-sP~~~-ADvVTtTTHKTLrG---PrGG~Il~~~~~~~~~~k~~~~~ 293 (490)
T 3ou5_A 220 YARMREVCDEVKAHLLADMAHISGL-VAAKVIP-SPFKH-ADIVTTTTHKTLRG---ARSGLIFYRKGVKAVDPKTGREI 293 (490)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGHHH-HHTTSSC-CGGGT-CSEEEEESSSTTCS---CSCEEEEEECSEEEECC--CCEE
T ss_pred HHHHHHHHhhcccEEEechhhhhhh-hcccccC-Ccccc-ceEEeccccccccC---CCceEEEeccccccccccccchh
Confidence 8999999999999999999886 54 2222221 11222 5887 56789986 3333 444431
Q ss_pred -------HHhhccC----ChH---------HHH------------------HHHHHHHHcCCCeeEEEeee---eEEEEE
Q 003466 707 -------VFDSFVG----DSK---------LWD------------------LELIQQISSHRTVQRVVALG---TLCAIE 745 (818)
Q Consensus 707 -------i~~~l~~----~~~---------~~~------------------~~l~~~l~~~~~v~~vrg~G---l~~~ie 745 (818)
|-..+.+ +.. .+. +.|.+.|.+.+.- -| .-| .++-++
T Consensus 294 ~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~-vv-sGgTdnHlvLvD 371 (490)
T 3ou5_A 294 PYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS-LV-SGGTDNHLVLVD 371 (490)
T ss_dssp ECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE-EG-GGSCSSSEEEEE
T ss_pred HHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCe-ee-cCCCCceEEEEe
Confidence 1111111 111 000 1233444444431 11 112 244455
Q ss_pred EecCcccCCCchHHHHHHHHHHHhCCceEee----------cCCEEEEECCCC----ChHHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLREDGVYMRP----------LGNVIYLMCGPC----SSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----------~g~~ir~~ppl~----~t~edId~~~~~l~~~l~~ 807 (818)
+.+.. .......+.|-+.||.+.. ....||+-.|.. +.++|++++.+.|.+++..
T Consensus 372 l~~~g-------~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~~ 440 (490)
T 3ou5_A 372 LRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp CGGGT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccC-------CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 54321 1244556677788999873 124689988774 5689999999999988853
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.55 Score=50.18 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=28.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+.+-.+|+|||++++-++.... .+|.+|.||=
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a-----~~g~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH-----TTTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 34777777799999999999987773 5677888875
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.059 Score=52.74 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=32.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
||+.+.|+| .||+||||++..|++.+. .+|.+++.+|.
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~ 38 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILR-----ERGLRVAVVKR 38 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhh-----hcCCceEEEEE
Confidence 478899999 789999999999999994 66888998884
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.98 Score=48.71 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=27.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
..+.|.|. +|+||||+...|+..+. ..+.+|...
T Consensus 130 ~vi~lvG~-nGaGKTTll~~Lag~l~-----~~~g~V~l~ 163 (328)
T 3e70_C 130 YVIMFVGF-NGSGKTTTIAKLANWLK-----NHGFSVVIA 163 (328)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 46889998 99999999999999984 556676654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.089 Score=52.10 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=23.3
Q ss_pred cCCCchhHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 6 RHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.||||++...-.+.=+ .+.+ ..|+.++|+|. +|+||||++..|++.+
T Consensus 3 ~~~~~~~~~~~~~~~~--------~~~~-~~~~~i~l~G~-~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 3 HHHHHSSGVDLGTENL--------YFQS-NAMVRIFLTGY-MGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------------------------CCCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCce--------eEec-CCCCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence 5788877654322211 1222 23568999997 8999999999999998
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=91.91 E-value=0.14 Score=50.20 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=32.8
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
||+.+.|+| -+|+||||+...|+..+. ++|.+|+.+|
T Consensus 5 ~~~~i~i~G-~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~ 41 (174)
T 1np6_A 5 MIPLLAFAA-WSGTGKTTLLKKLIPALC-----ARGIRPGLIK 41 (174)
T ss_dssp CCCEEEEEC-CTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cceEEEEEe-CCCCCHHHHHHHHHHhcc-----ccCCceeEEe
Confidence 578899999 589999999999999983 6799999888
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.8 Score=51.51 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.+-.+|+|||++++-++.... .+|.+|.||=
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a-----~~g~~vl~fS 232 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 232 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHH-----HTTCEEEEEC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHH-----HcCCEEEEEE
Confidence 4666677799999999999998884 4588999985
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.26 Score=53.50 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.+-.+|+|||++++-++..+. ..|.+|.||-
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a-----~~g~~Vl~fS 81 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSAL-----NDDRGVAVFS 81 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-----HTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 4777777899999999999999884 5788999986
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=88.65 E-value=0.41 Score=47.10 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=23.6
Q ss_pred cCCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 23 HSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|+..|..|+....+...|+|+|. .|+||||++..|.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~I~l~G~-~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 6 HHHHHSSGLVPRGSHMRVLLLGP-PGAGKGTQAVKLAEKL 44 (201)
T ss_dssp ----------CCCSCCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 33344444444443346888888 8999999999999988
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.37 E-value=0.42 Score=46.07 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=29.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
|+.|+|+|. +|+||||++..|.+.|. ..|..+.++
T Consensus 1 M~~I~i~G~-~GsGKsT~~~~L~~~l~-----~~g~~~~~~ 35 (194)
T 1nks_A 1 MKIGIVTGI-PGVGKSTVLAKVKEILD-----NQGINNKII 35 (194)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hcCceEEEE
Confidence 457899998 89999999999999993 567777666
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=87.47 E-value=2.8 Score=46.87 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=28.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+.+-.+|+|||++++-++.... . +.|.+|.||=
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a---~-~~g~~vl~~s 236 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAA---L-KEGVGVGIYS 236 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH---H-TTCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCeEEEEE
Confidence 4666666799999999999998874 2 4588899886
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=85.43 E-value=4.7 Score=45.68 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-CCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (818)
.+.+.+-.+|+|||++++-++..+. .+ |.+|.||=
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a-----~~~g~~vl~~s 278 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWG-----TAMGKKVGLAM 278 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHT-----TTSCCCEEEEE
T ss_pred eEEEEeecCCCCchHHHHHHHHHHH-----HhcCCcEEEEe
Confidence 4666666699999999999999883 44 88999885
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=84.80 E-value=0.62 Score=44.25 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
||+.|+|+|. +|+||||++..|.+.|
T Consensus 1 m~~~I~l~G~-~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGA-RGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESC-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEECC-CCCCHHHHHHHHHHHh
Confidence 4678999996 8999999999999998
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.46 E-value=7.2 Score=42.43 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.|. +|+|||+++..++..+. ..|.+|.|+-
T Consensus 63 i~~I~Gp-pGsGKSTLal~la~~~~-----~~gg~VlyId 96 (356)
T 3hr8_A 63 IVEIFGQ-ESSGKTTLALHAIAEAQ-----KMGGVAAFID 96 (356)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 4667776 99999999999999984 6688898875
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=84.31 E-value=0.68 Score=44.62 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+++.|+|+|. +|+||||++..|.+.|
T Consensus 4 ~~~~i~l~G~-~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGL-MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHh
Confidence 4667999998 9999999999999998
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=84.14 E-value=0.67 Score=43.76 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|+.|+|+|. +|+||||++..|.+.+
T Consensus 1 M~~i~l~G~-~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 1 MTLIILEGP-DCCFKSTVAAKLSKEL 25 (173)
T ss_dssp -CEEEEECS-SSSSHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 457888887 8999999999999998
|
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=84.12 E-value=2.1 Score=48.93 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=34.7
Q ss_pred CCCeEEEEe-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~g-t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+||-||||| .-|+.||-.+++.|.+.|+ .+|++|...|
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~-----~~g~~v~~~k 40 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLK-----RRGYNVTAVK 40 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHH-----HCCceEEEEe
Confidence 367899999 7799999999999999994 8999999999
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=83.68 E-value=1.1 Score=43.83 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=29.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+.++|+|. +|+|||+++.+++..+. ++|.++.++.
T Consensus 55 ~~~~l~G~-~GtGKT~la~~i~~~~~-----~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGS-FGVGKTYLLAAIANELA-----KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 57999997 89999999999999994 6677777654
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=83.30 E-value=0.83 Score=44.79 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=24.7
Q ss_pred CCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 33 ~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+..|+.|+|+|. .|+||||++..|.+.+
T Consensus 11 ~~~~~~~I~l~G~-~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 11 SPDQVSVIFVLGG-PGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CTTTCEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCCCCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 4556677899997 8999999999999887
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=83.29 E-value=0.73 Score=44.17 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+|+.++|+|. +|+||||++..|.+.|
T Consensus 3 ~m~~i~i~G~-~GsGKsTla~~La~~l 28 (175)
T 1via_A 3 LAKNIVFIGF-MGSGKSTLARALAKDL 28 (175)
T ss_dssp --CCEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence 3667999998 8999999999999998
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=1 Score=45.94 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=29.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
-++|+|. .|+||||..+.++..+. .+|.+|.+++|.
T Consensus 14 i~litG~-mGsGKTT~ll~~~~r~~-----~~g~kVli~~~~ 49 (223)
T 2b8t_A 14 IEFITGP-MFAGKTAELIRRLHRLE-----YADVKYLVFKPK 49 (223)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----hcCCEEEEEEec
Confidence 3555554 69999999999998884 789999999984
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=82.19 E-value=1.1 Score=44.52 Aligned_cols=36 Identities=19% Similarity=0.008 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
-.+++|+ .|+|||+..+.+++-+. .+|++|..|||.
T Consensus 10 i~v~~G~-mgsGKTT~ll~~a~r~~-----~~g~kV~v~k~~ 45 (191)
T 1xx6_A 10 VEVIVGP-MYSGKSEELIRRIRRAK-----IAKQKIQVFKPE 45 (191)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEec
Confidence 4556655 69999999999998884 789999999985
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.18 E-value=0.99 Score=44.31 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=24.1
Q ss_pred CCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 34 ~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+|+.|.|+|. +|+||||++..|.+.+
T Consensus 15 ~~~~~~I~l~G~-~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 15 RRFPGSIVVMGV-SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CCCSSCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 345667899998 8999999999999988
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=81.66 E-value=1 Score=42.97 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.|+|+|. +|+||||++..|.+.|
T Consensus 4 ~~i~l~G~-~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGG-SSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHS
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 45888888 8999999999999998
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=81.12 E-value=1.3 Score=42.04 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=22.5
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|..++|+|. .|+||||++..|.+.|
T Consensus 6 ~~~~i~l~G~-~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGF-MGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESC-TTSSHHHHHHHHHHHH
T ss_pred ccceEEEECC-CCCCHHHHHHHHHHHh
Confidence 3678999998 8999999999999998
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=81.03 E-value=1.4 Score=43.27 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=29.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
.++|+|. .|+||||..+.+++.+. .+|.+|.+++|.
T Consensus 5 i~vi~G~-~gsGKTT~ll~~~~~~~-----~~g~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGP-MYSGKTTELLSFVEIYK-----LGKKKVAVFKPK 40 (184)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCEEEEEEEC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEeec
Confidence 4677776 78999999988888773 678999999984
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=80.86 E-value=1.3 Score=42.70 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.|+|+|. .|+||||++..|.+.|
T Consensus 3 ~~I~l~G~-~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGL-PGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHc
Confidence 45889997 8999999999999998
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=80.70 E-value=1.3 Score=42.44 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
++.|+|+|. +|+||||++..|.+.+
T Consensus 11 ~~~i~i~G~-~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGT-PGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeC-CCCCHHHHHHHHHHHh
Confidence 456889997 8999999999999998
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=80.11 E-value=0.71 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. ||+|||+++..|++.|
T Consensus 42 lIvI~GP-TgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGA-TGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECS-TTSSHHHHHHHHHTTS
T ss_pred eEEEECC-CCCCHHHHHHHHHHHC
Confidence 6888998 9999999999998887
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 818 | ||||
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 3e-23 | |
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 7e-23 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 7e-21 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 1e-15 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 4e-15 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 2e-11 | |
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 9e-11 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 2e-07 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 0.001 |
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 101 bits (251), Expect = 3e-23
Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 44/226 (19%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A I+EP+ G+ + + + + C+ + + DEV TG R G
Sbjct: 187 VCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYN 245
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFD---------SFVGD---------------- 714
PD+ GK L+GG P++A LA + + ++ G+
Sbjct: 246 VKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN 305
Query: 715 ----------SKLWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL 764
+ L +++ + V+ V G LCAIE + N +
Sbjct: 306 EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVN-------VLDIC 358
Query: 765 KKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809
KL+E+G+ R + I L C + E + + + ++ FD
Sbjct: 359 LKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 404
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.4 bits (247), Expect = 7e-23
Identities = 43/223 (19%), Positives = 82/223 (36%), Gaps = 41/223 (18%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A ++EP+ G+ + DP + + + C ++ I DE+ TG R G D
Sbjct: 189 VAAFMVEPIQ-GEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN 247
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS---------FVGD-----------SKLWD 719
PDI GK L+GG+ P++A L + + + + G+ L +
Sbjct: 248 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEE 307
Query: 720 LELIQQIS-------------SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKK 766
L + V V G L AI ++ A + +
Sbjct: 308 ENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKET------KDWDAWKVCLR 361
Query: 767 LREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808
LR++G+ +P G++I + + + + + + F
Sbjct: 362 LRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 404
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 93.8 bits (232), Expect = 7e-21
Identities = 86/470 (18%), Positives = 145/470 (30%), Gaps = 116/470 (24%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFP 438
EN V+ + +++ D P ++ + + H F
Sbjct: 29 AENCRVWDVEGREYL----DFAGGIAVLNTGHLHP------KVVAAVEAQLKKLSHTCFQ 78
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 79 VLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA-------------- 124
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
+A G+YHG T + +G+ M
Sbjct: 125 -----TKRSGTIAFSGAYHGRTHYTL---------------ALTGKVNPYSAGMGLMPGH 164
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
+ P L+ + + + D
Sbjct: 165 VYRALYPCPLHGISEDDAIASIHRIFKNDAAPED-------------------------- 198
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I A++IEPV GG + P F + L C I +I DEV +G R G + +
Sbjct: 199 -IAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM 256
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK--------------LWDLELIQ 724
G PD+ + K + GG PLA V D+ L L++ +
Sbjct: 257 GVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE 315
Query: 725 QISSHRT---------------------VQRVVALGTLCAIELQAAGCNAGYGSLYAASL 763
Q + + + V LG + AIEL G + + A +
Sbjct: 316 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEI 375
Query: 764 LKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810
+ + R+ G+ + G NV+ ++ Q L + Q +E +
Sbjct: 376 VARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 425
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 77.5 bits (190), Expect = 1e-15
Identities = 49/236 (20%), Positives = 78/236 (33%), Gaps = 65/236 (27%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A+I+EPV GG+ P F R + Q + +I DE+ TG R G + G
Sbjct: 178 TAAVILEPVQ-GEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFG 236
Query: 680 CVPDIACYGKLLTGGVIPLAA-----------------TLATNAVFDSF----------- 711
VPDI K L GGV A T N + +
Sbjct: 237 IVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERT 296
Query: 712 --------VGDSKLWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASL 763
+G + L I ++ V +G + +EL+ A +
Sbjct: 297 RLWERAAELGPWFMEKLRAIP----SPKIREVRGMGLMVGLELKEKA---------APYI 343
Query: 764 LKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
+ +E V G VI + P V + E+ ++V E +++
Sbjct: 344 ARLEKEHRVLALQAGPTVIRFLP-----PLVIEK---------EDLERVVEAVRAV 385
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 76.2 bits (186), Expect = 4e-15
Identities = 103/491 (20%), Positives = 148/491 (30%), Gaps = 124/491 (25%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT--QG---PDA 415
PFT V + S E + + + D +SWW G P
Sbjct: 13 ILHPFTSMT--SPLPVYPVVS--AEGCELILSDGRRLV----DGMSSWWAAIHGYNHP-- 62
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
+L M HVMF + PA+E L+ +
Sbjct: 63 ----QLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADS------- 111
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
+ L + K + L + YHGDT GAM P
Sbjct: 112 ----GSVAVEVAMKMALQYWQAKGEARQRF----LTFRNGYHGDTFGAMSVCDPDNSMHS 163
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595
L + + P + EW +V + R EI
Sbjct: 164 LWKGYL---------PENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI--------- 205
Query: 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655
A+IIEP+V AGGM M P + + + K C I
Sbjct: 206 -------------------------AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+I DE+ TGF R G + PDI C GK LTGG + L+ATL T V ++
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE 300
Query: 716 K---------------------------LWD------------LELIQQISSHRTVQRVV 736
D E + V V
Sbjct: 301 AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVR 360
Query: 737 ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQ 796
LG + +E A+L K E GV++RP G +IYLM P+ +
Sbjct: 361 VLGAIGVVETTHPV--------NMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQR 412
Query: 797 LLLKLYQRLEE 807
L + + +++
Sbjct: 413 LTAAVNRAVQD 423
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 64.7 bits (156), Expect = 2e-11
Identities = 53/350 (15%), Positives = 96/350 (27%), Gaps = 43/350 (12%)
Query: 500 TTEKCIELKVLALKGSYHG-DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
+ ++L + G D + A S +G+ + + +
Sbjct: 81 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMT 140
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
S K V + + F + + SG
Sbjct: 141 GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG 200
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+ A I EP++ + GG+ + + L ++C+ R + +I DE TG R G
Sbjct: 201 NLAAFIAEPILSS-GGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRD 259
Query: 679 GCVPDIACYGKLLTGGVIPLA------------------------------ATLATNAVF 708
G PDI K L G+ A L V
Sbjct: 260 GVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV 319
Query: 709 DSFVGDSKLWDL------ELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAAS 762
++ + L+ + + V G L +E+ A
Sbjct: 320 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAK 379
Query: 763 LLKKLREDGVYM-----RPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807
+ ++ G+ M +G V + S + L L Q +E
Sbjct: 380 ITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 62.2 bits (150), Expect = 9e-11
Identities = 62/449 (13%), Positives = 117/449 (26%), Gaps = 131/449 (29%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFP 438
++ + N++I D +W P+ +++A + G +
Sbjct: 41 VKDAYAWDVDGNRYI----DYVGTWGPAICGHAHPEVIEALKVAMEKGTS-----FGAPC 91
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
A + + F ++G+ A L++ + G+
Sbjct: 92 ALENVLAEMVNDAV------PSIEMVRFVNSGTEACMAVLRLMRA-----------YTGR 134
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
D K++ +G YHG + T P V +
Sbjct: 135 D--------KIIKFEGCYHGHADMFLVKAGSGVATLG-----------LPSSPGVPKKTT 175
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
L+ P + +F E
Sbjct: 176 ANTLTTPYNDLEAV-----------KALFAENPGE------------------------- 199
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I +I+EP+V G + D F L + ++FDEV TGF +
Sbjct: 200 -IAGVILEPIV-GNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI-AYGGVQEKF 256
Query: 679 GCVPDIACYGKLLTGGVIPLAA--------------------TLATNAVFDSFVGDSKLW 718
G PD+ GK++ GG+ A TL+ N + + +
Sbjct: 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 719 DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSL-------------------- 758
+ + +R+ A E A C +
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 376
Query: 759 --YAASLLKKLREDGVYMRPLGNVIYLMC 785
+ + + E G+Y+ P
Sbjct: 377 LQKFSRFHRGMLEQGIYLAPSQFEAGFTS 405
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 51.6 bits (122), Expect = 2e-07
Identities = 53/449 (11%), Positives = 109/449 (24%), Gaps = 53/449 (11%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWT--QG---PDATLQIELARDMGYTAARFGHVMFP 438
+ N+ + D + + G P ++ +++ R + P
Sbjct: 42 SRGNYLVDVDGNRML----DLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILP 97
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
+ + E LL V S+ GS + E A K F + F +
Sbjct: 98 PENF--VEKLRESLLS-VAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKE 154
Query: 499 DTTEKCIEL-------KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551
+ I +L+ G++HG T+G + +
Sbjct: 155 ELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD---------- 204
Query: 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611
+ L P + + E++ +E+ + I + +
Sbjct: 205 --WPIAPFPRLKYPLEEF--VKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSE 260
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671
G + + + G +VD + D+
Sbjct: 261 GGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKK 320
Query: 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLWD---------LEL 722
T + + + A + + L L
Sbjct: 321 MMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTG 380
Query: 723 IQQISS--HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-N 779
+ + + + + RV GT C+ + L+ R GV + G
Sbjct: 381 LLDLQARYPQFISRVRGRGTFCSFDTPDES--------IRNKLISIARNKGVMLGGCGDK 432
Query: 780 VIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808
I L L +F
Sbjct: 433 SIRFRPTLVFRDHHAHLFLNIFSDILADF 461
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (91), Expect = 0.001
Identities = 38/335 (11%), Positives = 74/335 (22%), Gaps = 78/335 (23%)
Query: 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL-KVLALKGSYHGDTLG 522
+ G A +I + + +K EK ++ K++A + T G
Sbjct: 92 TIPTHQGRGAEQIYIPVLIKKR--------------EQEKGLDRSKMVAFSNYFFDTTQG 137
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
+ G + Y F N E L I E
Sbjct: 138 HSQ------INGCTVRNVYIKEAFDTGVRYDFKGNFD-----LEGLERGIEEVGPNNV-- 184
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
I+ + + G V
Sbjct: 185 ---------------------------------------PYIVATITSNSAGGQPVSLAN 205
Query: 643 QRILVKECQNRKIPVIFDE------VFTGFWRLGVETTADLLGCVPDIACYGKLLT---- 692
+ + + IPV+ D + R + + Y +L
Sbjct: 206 LKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAK 265
Query: 693 -GGVIPLAATLATNAVFDSFVGDSKLWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 751
++P+ L V + + ++ ++ +
Sbjct: 266 KDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD 325
Query: 752 NAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCG 786
Y L+ L E GV + G +
Sbjct: 326 WLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDA 360
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 818 | |||
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.97 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.95 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 99.87 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.84 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.82 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.82 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.76 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.42 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.38 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.36 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.36 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.35 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.33 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.33 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.29 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.25 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.21 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.2 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.18 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.13 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.13 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.11 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.11 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.08 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.08 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.07 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.04 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 98.97 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 98.96 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 98.95 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 98.94 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.93 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 98.93 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 98.89 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 98.82 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 98.76 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 98.75 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 98.74 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 98.73 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 98.69 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 98.59 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 98.54 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 98.53 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 98.52 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 98.5 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 98.43 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 98.41 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 98.39 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 98.39 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 98.38 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 98.35 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 98.3 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.27 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 98.24 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 98.22 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 98.22 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 98.16 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 98.15 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 98.13 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 98.08 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 98.08 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.07 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.03 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 97.95 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 97.93 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 97.88 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 97.86 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 97.85 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 97.76 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 97.66 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 97.63 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 97.57 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 97.46 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 97.31 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 97.25 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 96.97 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.95 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.93 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.87 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.71 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.46 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 96.26 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 95.46 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.44 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.37 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 95.3 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.18 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.03 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 94.29 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.27 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.81 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.54 | |
| d1vcoa2 | 272 | CTP synthase PyrG, N-terminal domain {Thermus ther | 92.2 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.43 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 91.29 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 90.36 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.35 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.26 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.9 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.77 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.47 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 89.33 | |
| d1s1ma2 | 266 | CTP synthase PyrG, N-terminal domain {Escherichia | 88.96 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 88.71 | |
| d2vo1a1 | 273 | CTP synthase PyrG, N-terminal domain {Human (Homo | 87.65 | |
| d2g0ta1 | 338 | Hypothetical protein TM0796 {Thermotoga maritima [ | 84.31 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 83.19 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 82.95 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 81.89 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 81.17 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 81.0 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 80.88 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 80.5 |
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-66 Score=582.75 Aligned_cols=381 Identities=23% Similarity=0.279 Sum_probs=306.1
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
+.++.+++++..+.+ ..|+++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++
T Consensus 6 l~~r~~~~~~~g~~~------~~P~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~ 72 (425)
T d1sffa_ 6 LMQRRSQAIPRGVGQ------IHPIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKL 72 (425)
T ss_dssp HHHHHHHHSCTTBCC------SEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCCCCCC------CCCceEEEEecC--EEEeCCCC----EEEEcCcCHHhhcccCC-cHHHHHHHHHHHhhc
Confidence 445555555554432 358899999997 79999999 99999999999999999 999999999999999
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
.+.++....+++..+|+++|.+.+|....++|+|++|||||||+|+|+| |+||+| .+||++
T Consensus 73 ~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~a-r~~t~r------------------~~ii~~ 133 (425)
T d1sffa_ 73 SHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR------------------SGTIAF 133 (425)
T ss_dssp SCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHTC------------------CEEEEE
T ss_pred CCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHh-hhhhcc------------------cceEee
Confidence 8877666779999999999999998655679999999999999999999 888764 589999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+++|||+|.+++++++....+.. +.. . .|. .....+.|... .+ ..
T Consensus 134 ~~~yHG~t~~~~~~t~~~~~~~~----~~~----~--~~~-----~~~~~~~~~~~------------~~--------~~ 178 (425)
T d1sffa_ 134 SGAYHGRTHYTLALTGKVNPYSA----GMG----L--MPG-----HVYRALYPCPL------------HG--------IS 178 (425)
T ss_dssp TTCCCCSSHHHHHHSSCCTTTTT----TSC----C--CCS-----SEEEECCCBGG------------GT--------BC
T ss_pred cCCCcCccccchhhcCCCCcccC----Ccc----c--ccC-----CccccCCcccc------------cc--------cc
Confidence 99999999999999986544332 000 0 000 01111222111 00 00
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
.... ....++.+... ...+++||||+||| |+++|+++||++||++|+++|++||++||+|||+|||||||.+
T Consensus 179 -~~~~---~~~~~~~~~~~---~~~~~vaavi~EPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~ 250 (425)
T d1sffa_ 179 -EDDA---IASIHRIFKND---AAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL 250 (425)
T ss_dssp -HHHH---HHHHHHHHHHT---CCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred -chhh---HHHHHHHHHhc---ccccceEEEEecCc-cCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchh
Confidence 0011 11122222211 45678999999998 9999999999999999999999999999999999999999999
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH-----------------------------------H
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-----------------------------------L 717 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~ 717 (818)
|++++|||.|||+|+||+||||| |+||+++++++++.+..... +
T Consensus 251 ~a~~~~gv~PDi~~~gK~l~gG~-P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~ 329 (425)
T d1sffa_ 251 FAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQK 329 (425)
T ss_dssp SGGGGTTSCCSEEEECGGGGTSS-CCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHhcCCCccceecccccCCCc-ceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 99999999999999999999995 99999999999998764322 2
Q ss_pred HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHH
Q 003466 718 WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVC 794 (818)
Q Consensus 718 ~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edI 794 (818)
+.+.+.+.+++++.+.+|||.|+|++++|..+.....++...+..+.++|+++||++.+. +++|||.||++||++||
T Consensus 330 l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~ei 409 (425)
T d1sffa_ 330 LKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQI 409 (425)
T ss_dssp HHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHH
T ss_pred hhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHH
Confidence 223445566789999999999999999998764444456677888999999999999875 48999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003466 795 SQLLLKLYQRLEEFD 809 (818)
Q Consensus 795 d~~~~~l~~~l~~l~ 809 (818)
|++++++++++++++
T Consensus 410 d~~l~~l~~al~eik 424 (425)
T d1sffa_ 410 RQGLEIISQCFDEAK 424 (425)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998875
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-66 Score=584.80 Aligned_cols=378 Identities=28% Similarity=0.394 Sum_probs=305.2
Q ss_pred hhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccc
Q 003466 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (818)
Q Consensus 356 ~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~ 435 (818)
.+++|+||||+++... .++.++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.
T Consensus 8 ~d~~h~~~p~~~~~~~--~p~~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~ 78 (429)
T d1s0aa_ 8 FDQRHILHPFTSMTSP--LPVYPVVSAEGC--ELILSDGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHV 78 (429)
T ss_dssp HHHHHBCCTTCCSSSC--CCCEEEEEEEBT--EEEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHHCSCC
T ss_pred HHHHhcCCCcccCCCC--CCCcceEEeECC--EEEECCCC----EEEECcccHHHHhhcCC-cHHHHHHHHHHHHhcCCc
Confidence 6778999999998652 334457888886 79999999 99999999999999999 999999999999999887
Q ss_pred cCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCC
Q 003466 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (818)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~s 515 (818)
.+....+++..+++++|++..+.+ +++|+|++|||||||.|+|+| |+|++++| ..+.+||+++++
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~f~~sGseA~e~A~k~a-r~~~~~~g-------------~~~~~ii~~~~~ 143 (429)
T d1s0aa_ 79 MFGGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKG-------------EARQRFLTFRNG 143 (429)
T ss_dssp CCSSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHT-------------CCCCEEEEETTC
T ss_pred ccCCccchHHHHHHHHHHhhhccC-cceeeeccccccchhhhhhhh-hheeeccc-------------ccccEEEEecCC
Confidence 766778999999999999988765 789999999999999999999 78887664 345699999999
Q ss_pred CCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchh
Q 003466 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (818)
Q Consensus 516 YHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~ 595 (818)
|||+|.+++++++...++.. ++.. ... ...+.+.+.... ...+| ...
T Consensus 144 yHG~t~~a~~~t~~~~~~~~----~~~~----~~~-------~~~~~~~~~~~~--------~~~~~----------~~~ 190 (429)
T d1s0aa_ 144 YHGDTFGAMSVCDPDNSMHS----LWKG----YLP-------ENLFAPAPQSRM--------DGEWD----------ERD 190 (429)
T ss_dssp CCCSSHHHHTTSCTTTTTGG----GGTT----TSC-------CCEEECCCCSBC---------CCCC----------GGG
T ss_pred ccccchhhhhhcCCcccccc----ccCc----ccc-------cccccccccccc--------ccccc----------hhh
Confidence 99999999999987655443 1110 000 011111111100 00111 011
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh
Q 003466 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (818)
Q Consensus 596 ~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~ 675 (818)
.+.+++.+. ..+++|||||+||+.+++||+++||++|+++|+++|++||++||+|||||||||||++|++
T Consensus 191 -----~~~~~~~~~-----~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~ 260 (429)
T d1s0aa_ 191 -----MVGFARLMA-----AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFAC 260 (429)
T ss_dssp -----GHHHHHHHH-----HHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred -----hhhhhhhhh-----hcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccccc
Confidence 134445554 3578999999999855888999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEecccccCCccccceeecchHHHhhccCCh--------H----------------HH------------H
Q 003466 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS--------K----------------LW------------D 719 (818)
Q Consensus 676 e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~--------~----------------~~------------~ 719 (818)
+++||+|||+|+||+|+|||+|+|++++++++++.+.... . ++ .
T Consensus 261 ~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g 340 (429)
T d1s0aa_ 261 EHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIE 340 (429)
T ss_dssp GGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccceecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHH
Confidence 9999999999999999999999999999999998764321 0 01 1
Q ss_pred HHHH---HHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHH
Q 003466 720 LELI---QQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQ 796 (818)
Q Consensus 720 ~~l~---~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~ 796 (818)
+.+. +.+.+++.|.+|||.|+|+++++..+. .+..+.+.|+++||++.+.|+++||.||+++|++|||+
T Consensus 341 ~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~--------~~~~~~~~~~~~Gl~~~~~g~~i~~~Ppl~it~~eid~ 412 (429)
T d1s0aa_ 341 VQLREQLAPARDAEMVADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQR 412 (429)
T ss_dssp HHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCB--------CHHHHHHHHHHTTEECCCBTTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHhccCCceEEEeecccEEEEEecCcc--------cHHHHHHHHHHCCcEEEecCCEEEEeCCcCCCHHHHHH
Confidence 1222 334667889999999999999997652 25568899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003466 797 LLLKLYQRLEEF 808 (818)
Q Consensus 797 ~~~~l~~~l~~l 808 (818)
++++|+++|+++
T Consensus 413 ~~~~l~~al~e~ 424 (429)
T d1s0aa_ 413 LTAAVNRAVQDE 424 (429)
T ss_dssp HHHHHHHHTSSG
T ss_pred HHHHHHHHHHhh
Confidence 999999998654
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=9.2e-65 Score=574.14 Aligned_cols=366 Identities=21% Similarity=0.244 Sum_probs=293.6
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ||||.||| +|||+++|+|++++||+ ||+|.+|+++|++++.|.. ..+.+++..+||++|++
T Consensus 23 ~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~la~~L~~ 94 (431)
T d1zoda1 23 EPMIIERAKGS--FVYDADGR----AILDFTSGQMSAVLGHC-HPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLAN 94 (431)
T ss_dssp CSSCCCEEEBT--EEECTTCC----EEEETTHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHH
T ss_pred CCCeEEEeecC--EEEECCCC----EEEEcccCHHhhhhcCC-CHHHHHHHHHHHhhccccc-cccccHHHHHHHHHHHH
Confidence 47788999997 79999999 99999999999999999 9999999999999998764 45679999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
..+++ +++|+|++|||||||+|||+| |+|++| .+|++|+++|||.|.+++++++...++.
T Consensus 95 ~~~~~-~~~v~f~~sGseA~e~Alk~A-r~~t~r------------------~~i~~~~~~yHG~t~~~~~~~~~~~~~~ 154 (431)
T d1zoda1 95 ITPPG-LDRALLLSTGAESNEAAIRMA-KLVTGK------------------YEIVGFAQSWHGMTGAAASATYSAGRKG 154 (431)
T ss_dssp HSCTT-CCEEEEESCHHHHHHHHHHHH-HHHHTC------------------CEEEEETTCCCCSSHHHHHTCCSSCCSS
T ss_pred hCCcc-cceeeecccccchHHHHHHHH-HHhcCC------------------cceeecccccccccchhhcccccccccc
Confidence 88654 799999999999999999999 888764 5899999999999999999987654332
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. .|. ..+..+++.|.++..... . .. ........+.+...+..
T Consensus 155 ~--~~~---------------~~~~~~~~~~~~~~~~~~--------~--------~~-~~~~~~~~~~~~~~~~~---- 196 (431)
T d1zoda1 155 V--GPA---------------AVGSFAIPAPFTYRPRFE--------R--------NG-AYDYLAELDYAFDLIDR---- 196 (431)
T ss_dssp S--CCC---------------CTTEEEECCCCTTSCCCE--------E--------TT-EECHHHHHHHHHHHHHH----
T ss_pred c--CCc---------------ccCceeeeeecccccccc--------c--------cc-chhhhhhHHHHHHHHHH----
Confidence 1 111 012233444433321100 0 00 00111122344444443
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++|||||+||| |++||+++||++||++||++|++||++||+|||+|||||||++|+++++||+|||+|+||+||||
T Consensus 197 ~~~~~iAavi~EPi-~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG 275 (431)
T d1zoda1 197 QSSGNLAAFIAEPI-LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG 275 (431)
T ss_dssp HCCSCEEEEEECSE-ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT
T ss_pred hccccccceeeccc-cccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccccccccc
Confidence 45789999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
+|++++++++++++.+..... .+.+.+.+.+.+++.+.+|||
T Consensus 276 -~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG 354 (431)
T d1zoda1 276 -LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRG 354 (431)
T ss_dssp -SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred -cccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEee
Confidence 599999999988775432110 122334555678899999999
Q ss_pred eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe-----ecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-----PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~-----p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.|+|+++++..+.....+....+..+.+.|+++|++.+ +.+++|||.||+++|++|||+++++|+++|+++
T Consensus 355 ~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v 430 (431)
T d1zoda1 355 RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 430 (431)
T ss_dssp ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999987643333445667889999999998643 256899999999999999999999999999875
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.2e-63 Score=554.48 Aligned_cols=364 Identities=18% Similarity=0.229 Sum_probs=296.8
Q ss_pred ccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhh
Q 003466 351 CDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAA 430 (818)
Q Consensus 351 ~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~ 430 (818)
+++.++++++.||+|. ..|+++++++|. |+||.||| +||||++|+|+++|||+ ||+|++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~~~-------p~P~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Av~~q~~ 71 (404)
T d2byla1 6 DDIFEREYKYGAHNAH-------PLPVALERGKGI--YLWDVEGR----KYFDFLSSISAVNQGHC-HPKIVNALKSQVD 71 (404)
T ss_dssp HHHHHHHHHHBCSCCC-------CEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCC-------CCCceEEEeecC--EEEECCCC----EEEEecCCHHHHhhcCC-CHHHHHHHHHHHh
Confidence 3455666667777653 247889999997 79999999 99999999999999999 9999999999999
Q ss_pred hcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEE
Q 003466 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (818)
Q Consensus 431 ~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II 510 (818)
++.+.+. .+.++...+++++++++.+ .++|+|++|||||||.|+|+| |.++++.+. ....|.+|+
T Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~v~~~~sGseA~e~Aik~a-r~~~~~~~~----------~~~~~~~i~ 136 (404)
T d2byla1 72 KLTLTSR-AFYNNVLGEYEEYITKLFN---YHKVLPMNTGVEAGETACKLA-RKWGYTVKG----------IQKYKAKIV 136 (404)
T ss_dssp TCCCCCT-TEEESSHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTTC----------CCTTCCEEE
T ss_pred hCCCccc-ccccchHHHHHHhhhhccc---ccccccccCccccchhHHHHH-HHHhhhccc----------ccccccccc
Confidence 9887653 3456778888898888876 579999999999999999999 777655421 124578999
Q ss_pred EEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcc
Q 003466 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (818)
Q Consensus 511 ~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~ 590 (818)
.+.++|||.|.++++.++.+.++..+ .|+. ++... ++|||.
T Consensus 137 ~~~~~~hg~t~~~~~~~~~~~~~~~~-~p~~---------------~~~~~----------------~p~~d~------- 177 (404)
T d2byla1 137 FAAGNFWGRTLSAISSSTDPTSYDGF-GPFM---------------PGFDI----------------IPYNDL------- 177 (404)
T ss_dssp EETTCCCCCSHHHHTTCCCHHHHTTS-CSCC---------------TTEEE----------------ECTTCH-------
T ss_pred ccCCCccccccceeccCCCcccccCC-CCCC---------------CCeeE----------------ecccCH-------
Confidence 99999999999999999876554431 1110 01111 225553
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC
Q 003466 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (818)
Q Consensus 591 ~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG 670 (818)
+.+++.+. .+++||||+||| |+++|+++||++||++|+++|++||++||+|||+|||||||
T Consensus 178 -----------~~l~~~l~-------~~~iAaviiEPi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G 238 (404)
T d2byla1 178 -----------PALERALQ-------DPNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG 238 (404)
T ss_dssp -----------HHHHHHHT-------STTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred -----------HHHHHhcC-------CCCeEEEEECCc-cCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccc
Confidence 56777775 368999999998 99999999999999999999999999999999999999999
Q ss_pred ccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH-------------------HH------------H
Q 003466 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-------------------LW------------D 719 (818)
Q Consensus 671 ~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~ 719 (818)
++|+++++||+|||+|+||+|||||+|+|++++++++++.+..... ++ .
T Consensus 239 ~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g 318 (404)
T d2byla1 239 RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLG 318 (404)
T ss_dssp SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred ccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhh
Confidence 9999999999999999999999999999999999999988764321 11 1
Q ss_pred HHHHHHHHc--CCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-cCCEEEEECCCCChHHHHHH
Q 003466 720 LELIQQISS--HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-LGNVIYLMCGPCSSPEVCSQ 796 (818)
Q Consensus 720 ~~l~~~l~~--~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-~g~~ir~~ppl~~t~edId~ 796 (818)
+.+.+.+.+ .+.+.+|||.|+|+++++.+... ..+..+.++|+++||++.+ .+++|||+||+++|++|||+
T Consensus 319 ~~l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~------~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~ 392 (404)
T d2byla1 319 IILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD------WDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRE 392 (404)
T ss_dssp HHHHHHHHTSCTTTEEEEEEETTEEEEEECCCSS------CCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHhhccccceeeeecccEEEEEEecCCc------hhHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHH
Confidence 123334433 35689999999999999976521 2356788999999999987 46999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003466 797 LLLKLYQRLEE 807 (818)
Q Consensus 797 ~~~~l~~~l~~ 807 (818)
++++|+++|++
T Consensus 393 ~~~~l~~al~~ 403 (404)
T d2byla1 393 SIEIINKTILS 403 (404)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.1e-61 Score=539.12 Aligned_cols=334 Identities=20% Similarity=0.244 Sum_probs=280.1
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|++|++++|. |+||.||| +||||++|+|+++|||+ ||+|.+|+++|++++.+.+ ..+.+++..+|+++|.+
T Consensus 19 ~p~~i~ra~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-hp~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 90 (387)
T d1vefa1 19 HDLLIVRGQGA--RVWDAEGN----EYIDCVGGYGVANLGHG-NPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTA 90 (387)
T ss_dssp CSSCEEEEEBT--EEEETTSC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCceEEEeEcC--EEEECCCC----EEEEcchhHHhhhhcCC-cHHHHHHHHHHHHhhcccc-cccCCchHHHHHHHhhh
Confidence 46689999997 69999999 99999999999999999 9999999999999977654 24568999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
..+.+ +++|+|++|||||||.|||+| |.|+++ .+||+++++|||+|.+++++++.+.++.
T Consensus 91 ~~~~~-~~~v~f~~sGseA~e~Aik~A-r~~t~r------------------~~ii~~~~~yHG~t~~~~~~s~~~~~~~ 150 (387)
T d1vefa1 91 ILPPE-LNRVFPVNSGTEANEAALKFA-RAHTGR------------------KKFVAAMRGFSGRTMGSLSVTWEPKYRE 150 (387)
T ss_dssp TSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHSC------------------CEEEEETTCCCCSSHHHHHTCCCHHHHG
T ss_pred hcccc-ceeeccccCchHHHHHHHHHH-Hhhccc------------------ceecccccCCCCCccceEeccCCccccC
Confidence 87754 679999999999999999999 788764 5999999999999999999998765544
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ . +. + .+..+ ++|||. +.|++.++
T Consensus 151 ~~-----~---p~---~-----~~~~~----------------~p~~d~------------------~~l~~~~~----- 175 (387)
T d1vefa1 151 PF-----L---PL---V-----EPVEF----------------IPYNDV------------------EALKRAVD----- 175 (387)
T ss_dssp GG-----C---SC---S-----SCEEE----------------ECTTCH------------------HHHHHHCC-----
T ss_pred CC-----C---CC---C-----CCceE----------------eCCCCH------------------HHHHHhcC-----
Confidence 31 0 00 0 11111 226663 45666553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++||||+||| |+++|++++|++||++|+++|++||++||+|||+|||||||++|+++++|++|||+|+||+||||
T Consensus 176 ---~~iAavi~EPi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~gK~l~gG 251 (387)
T d1vefa1 176 ---EETAAVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG 251 (387)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT
T ss_pred ---CCeEEEEEECC-CCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeecccCCCC
Confidence 57999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHHc--CCCeeEEEeeeeE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQISS--HRTVQRVVALGTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~~--~~~v~~vrg~Gl~ 741 (818)
+|++++++++++++.+..... ++ .+.+.+.++. ++.|.+|||.|+|
T Consensus 252 -~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~Gl~ 330 (387)
T d1vefa1 252 -VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLM 330 (387)
T ss_dssp -SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTE
T ss_pred -ccccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcCCCceEEEeecceE
Confidence 599999999999988754321 11 1223444543 4678999999999
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+++++.++. +..+.+.++++|+++.+. ++++||.||++||++|||+++++|+++|
T Consensus 331 ~~ie~~~~~---------~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 331 VGLELKEKA---------APYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp EEEEESSCS---------HHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCc---------hHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 999997652 445777888999988765 5899999999999999999999999987
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=3.9e-61 Score=539.94 Aligned_cols=362 Identities=20% Similarity=0.284 Sum_probs=278.2
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
+.+.+.++.+|+|++ .|++|++++|. ||||.||| +||||++|+|+.+|||+ ||+|++|+++|++++
T Consensus 6 ~~~~~~~~~~~~y~p-------~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~ 71 (404)
T d1z7da1 6 YINNELKYGAHNYDP-------IPVVLKRAKGV--FVYDVNDK----RYYDFLSAYSSVNQGHC-HPNILNAMINQAKNL 71 (404)
T ss_dssp HHHHHHHHBCCCCCC-------EEEEEEEEEBT--EEEETTCC----EEEESSHHHHTTTTCBT-CHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCCC-------CCceEEEeecC--EEEECCCC----EEEEccccHHHHhhhcC-cHHHHHHHHHHHHhC
Confidence 344455677887753 58899999998 69999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
++.+. .+.+.+..++++.+.++.+ .++++|++||++|++.|+|+| |+++.+... ....+.+|+.+
T Consensus 72 ~~~~~-~~~~~~~~~~~~~~~~~~~---~~~v~~~~sgs~a~~~a~k~a-r~~~~~~~~----------~~~~~~~~~~~ 136 (404)
T d1z7da1 72 TICSR-AFFSVPLGICERYLTNLLG---YDKVLMMNTGAEANETAYKLC-RKWGYEVKK----------IPENMAKIVVC 136 (404)
T ss_dssp SCCCT-TSEEHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTSC----------CCTTCCEEEEE
T ss_pred CCccc-ccchHHHHHHHHhhhhccc---cceeeeeccccchHHHHHHHH-HHHHhhccc----------ccccccccccc
Confidence 87643 3445666677676777665 479999999999999999999 777654321 11456789999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
.++|||.+.++++.++...++.. + ++. . +...++ | +++
T Consensus 137 ~~~~hg~~~~~~~~~~~~~~~~~----~----~~~--~------~~~~~~--~--------------~~~---------- 174 (404)
T d1z7da1 137 KNNFSGRTLGCISASTTKKCTSN----F----GPF--A------PQFSKV--P--------------YDD---------- 174 (404)
T ss_dssp TTC------------------------------------------CEEEE--C--------------TTC----------
T ss_pred cccCCCCcccccccccccccccC----C----CCC--C------cccccc--c--------------cch----------
Confidence 99999999999998876655442 0 000 0 011111 1 222
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
.+.++..+. .++|||||+||| |++||+++||++||++|+++|++||++||+|||||||||||++
T Consensus 175 --------~~~l~~~~~-------~~~iAavi~EPi-~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~ 238 (404)
T d1z7da1 175 --------LEALEEELK-------DPNVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 238 (404)
T ss_dssp --------HHHHHHHHT-------STTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred --------HHHHHHHhc-------CCCEEEEEEEEE-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccccc
Confidence 134444443 578999999998 9999999999999999999999999999999999999999999
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH-----------------------------------H
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-----------------------------------L 717 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~ 717 (818)
|+++++||+|||+|+||+||||++|+|++++++++++.+..... .
T Consensus 239 ~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~ 318 (404)
T d1z7da1 239 LCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGP 318 (404)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhH
Confidence 99999999999999999999999999999999999998764422 1
Q ss_pred HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHH
Q 003466 718 WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQ 796 (818)
Q Consensus 718 ~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~ 796 (818)
+.+.+.+.+++++.+.+|||.|+|+++++..+. .....++++|+++||++.+.+ ++|||.||+++|++|||+
T Consensus 319 ~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~-------~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~ 391 (404)
T d1z7da1 319 FLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-------VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDE 391 (404)
T ss_dssp HHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-------CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCc-------ccHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHH
Confidence 122344556788999999999999999998663 224568899999999998854 899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003466 797 LLLKLYQRLEEF 808 (818)
Q Consensus 797 ~~~~l~~~l~~l 808 (818)
++++|+++++++
T Consensus 392 ~~~~l~~alk~~ 403 (404)
T d1z7da1 392 CTEIIVKTVKFF 403 (404)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999876
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=3.5e-61 Score=548.95 Aligned_cols=377 Identities=19% Similarity=0.201 Sum_probs=280.2
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC----CChhHHHHHH
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN----VYEPALECAE 450 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~----~~~~~~eLae 450 (818)
.|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+...... ....+.+|++
T Consensus 35 ~p~~~~~g~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae 107 (461)
T d1ohwa_ 35 FFCNYEESRGN--YLVDVDGN----RMLDLYSQISSIPIGYS-HPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRE 107 (461)
T ss_dssp CCBCTTTCBBT--EEEBTTSC----EEEESSHHHHTCSSCBT-CHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHH
T ss_pred CCeEEEEeecC--EEEECCCC----EEEEcccCHHHHhhcCC-cHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHH
Confidence 35567777776 79999999 99999999999999999 99999999999998765432222 2345778888
Q ss_pred HHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCC-------------ccccccceEEEEEcCCCC
Q 003466 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKD-------------TTEKCIELKVLALKGSYH 517 (818)
Q Consensus 451 ~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~-------------~~~~~~r~~II~~~~sYH 517 (818)
+|.+..+.+ +++|+|++|||||||+|||+| |.|++.++. ++. .....+|.+||+|+++||
T Consensus 108 ~l~~~~~~~-~~~v~f~~sGseAve~Aik~A-r~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syH 180 (461)
T d1ohwa_ 108 SLLSVAPKG-MSQLITMACGSCSNENAFKTI-FMWYRSKER-----GQSAFSKEELETCMINQAPGCPDYSILSFMGAFH 180 (461)
T ss_dssp TGGGGCCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHHH-----TTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCC
T ss_pred HHHhhhccC-cceeeeecchhhhhHHHHHHH-HHHhhhccc-----CcccccchhhhhhhhccccCCCCceEEEecCCcC
Confidence 888877655 789999999999999999999 666544321 000 001245678999999999
Q ss_pred CCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHH
Q 003466 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (818)
Q Consensus 518 G~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~ 597 (818)
|+|.+++++|+.+.++..+ .+. ++.+.. ...+.+.|... +. . +.....
T Consensus 181 G~t~~a~s~tg~~~~~~~~-~~~-------~~~~~~----~~~~~~~~~~~-----------~~-------~--~~~~~~ 228 (461)
T d1ohwa_ 181 GRTMGCLATTHSKAIHKID-IPS-------FDWPIA----PFPRLKYPLEE-----------FV-------K--ENQQEE 228 (461)
T ss_dssp CSSHHHHHTCCSCHHHHTT-CCC-------CCCCEE----CCCCCCSSGGG-----------CH-------H--HHHHHH
T ss_pred CCCcccccccCCccccccc-ccc-------cCCccc----ccccccccccc-----------cc-------c--ccchhh
Confidence 9999999999977554431 010 111100 00011111111 00 0 001222
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcc
Q 003466 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (818)
Q Consensus 598 ~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (818)
..+.+.+++++.... .++++|||||+||| |+++|++++|++||++|+++|++||++||+|||||||||||++|++++
T Consensus 229 ~~~~~~l~~~~~~~~--~~~~~iAavivEPi-~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~ 305 (461)
T d1ohwa_ 229 ARCLEEVEDLIVKYR--KKKKTVAGIIVEPI-QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEH 305 (461)
T ss_dssp HHHHHHHHHHHHHHH--HTTCCEEEEEECSS-BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGG
T ss_pred hhhHHHHHHHHHHHH--hCCCccceeeeccc-cccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccc
Confidence 233455555554211 35789999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCC--CCcEEEecccccCCccccceeecchHHHhhcc---CChH--------------------------HHHHHHHHHH
Q 003466 678 LGC--VPDIACYGKLLTGGVIPLAATLATNAVFDSFV---GDSK--------------------------LWDLELIQQI 726 (818)
Q Consensus 678 ~gv--~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~---~~~~--------------------------~~~~~l~~~l 726 (818)
+|+ .|||+|+||+|+||++|.++++.......... .... ++.+++.+..
T Consensus 306 ~gi~~~PDiv~~gK~l~~g~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~ 385 (461)
T d1ohwa_ 306 WGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQ 385 (461)
T ss_dssp GCCSSCCSEEEECGGGSSEEEEECGGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCchhhhhhhcccccccccccccccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999 49999999999999877776665543322211 1111 2223344444
Q ss_pred HcCC-CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 727 SSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 727 ~~~~-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.++| .|.+|||.|+|+++++.++ ..+.++.+.|+++||++.+.+ ++|||.||+++|++|||+++++|+++
T Consensus 386 ~~~~~~i~~vrG~Gl~~~ie~~~~--------~~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~ 457 (461)
T d1ohwa_ 386 ARYPQFISRVRGRGTFCSFDTPDE--------SIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDI 457 (461)
T ss_dssp HHCTTTCEEEEEETTEEEEECSSH--------HHHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhCCCceEEeeeeeEEEEEEcCCH--------HHHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 5676 5899999999999999755 567789999999999999854 89999999999999999999999999
Q ss_pred HHHH
Q 003466 805 LEEF 808 (818)
Q Consensus 805 l~~l 808 (818)
|+++
T Consensus 458 l~ef 461 (461)
T d1ohwa_ 458 LADF 461 (461)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 9763
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=6.8e-60 Score=533.43 Aligned_cols=352 Identities=16% Similarity=0.193 Sum_probs=283.1
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. |+||.||| +|||+++++|++++||+ ||+|++|+++|++++.+.. ..+.+..++++++.
T Consensus 33 ~~P~~i~~a~G~--~l~D~~G~----~ylD~~~~~~~~~lGh~-hp~i~~ai~~~~~~~~~~~---~~~~~~~~la~~~~ 102 (427)
T d2gsaa_ 33 GQPIVFDRVKDA--YAWDVDGN----RYIDYVGTWGPAICGHA-HPEVIEALKVAMEKGTSFG---APCALENVLAEMVN 102 (427)
T ss_dssp SCCCCEEEEEBT--EEEETTSC----EEEESSGGGTTTTTCBT-CHHHHHHHHHHHTTCSCCS---SCCHHHHHHHHHHH
T ss_pred CCCcEEEEeecC--EEEECCCC----EEEEechhHHHHhccCC-cHHHHHHHHHHHHhcCccc---cchhHHHHHHHHHH
Confidence 458889999997 79999999 99999999999999999 9999999999999976543 45678889999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+..+. .++|+|++||+||||+|+|+| |.||+| .+||+++++|||+|.+++++++...++
T Consensus 103 ~~~~~--~~~v~f~~sGseA~e~Alk~a-r~~t~r------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~ 161 (427)
T d2gsaa_ 103 DAVPS--IEMVRFVNSGTEACMAVLRLM-RAYTGR------------------DKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSCGGGCSSCCHHHHH
T ss_pred hhCCc--cccccccCCcHHHHHHHHHHH-HHhcCC------------------CeEEEEecccccCcceeeeecCCcccc
Confidence 98764 589999999999999999999 888764 589999999999999999999764333
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .|. .|.+ .....++.. ..+++|. +.++++++
T Consensus 162 ~~--~p~---------~~~~------~~~~~~~~~--------~~~~~~~------------------~~le~~~~---- 194 (427)
T d2gsaa_ 162 LG--LPS---------SPGV------PKKTTANTL--------TTPYNDL------------------EAVKALFA---- 194 (427)
T ss_dssp TT--CCS---------CSSS------CHHHHTTEE--------EECTTCH------------------HHHHHHHT----
T ss_pred cC--CCC---------CCCC------cccCcccee--------ccCcchH------------------HHHHHHHH----
Confidence 21 010 0111 000011111 1124442 67888887
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
++++++||||+||| |+++|+++||++||++|+++|++||++||+||||||| |+|++|+++++|+.|||+|+||+|||
T Consensus 195 -~~~~~iaavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~PDi~~~gK~lgg 271 (427)
T d2gsaa_ 195 -ENPGEIAGVILEPI-VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGG 271 (427)
T ss_dssp -TSTTTEEEEEECSS-BCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCCCSEEEECGGGGT
T ss_pred -hCCCCeEEEEEcCC-cCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccchHHhcCCCHHHHhhhhccCC
Confidence 56789999999998 9999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH--------------------------------------HHHHHHHHHHHcCCCeeEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK--------------------------------------LWDLELIQQISSHRTVQRV 735 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~--------------------------------------~~~~~l~~~l~~~~~v~~v 735 (818)
| +|+||+++++++++.+..... ++.+.+.+..++++....+
T Consensus 272 G-~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v 350 (427)
T d2gsaa_ 272 G-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACG 350 (427)
T ss_dssp T-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred C-cceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEE
Confidence 9 699999999999998864211 2223344444678887788
Q ss_pred EeeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
++.|.|+++.+...... ...+......+.+.|+++||++.|.+... +.||++||++|||+++++|+++++++
T Consensus 351 ~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~~~-~~~~l~~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 351 GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEA-GFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC-EECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred cccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCCcc-eeCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 89999999998654211 11234456678899999999999876433 45899999999999999999998753
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-34 Score=320.49 Aligned_cols=317 Identities=14% Similarity=0.101 Sum_probs=235.5
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCC----CCChhHHHHHHHHH
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE----NVYEPALECAELLL 453 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~----~~~~~~~eLae~L~ 453 (818)
++++++|. ++||.||+ +||||+| |+|||++.||+|++|+++++++++.....+ +..+.+.+|+++|+
T Consensus 30 ~i~~~~g~--~v~~~dG~----~~l~f~s---~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA 100 (401)
T d1fc4a_ 30 IITSAQQA--DITVADGS----HVINFCA---NNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA 100 (401)
T ss_dssp CBCSCSSS--EEEBTTSC----EEEECCC---SCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred eccCCCCC--eEEecCCC----EEEEEEc---cccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHH
Confidence 56778887 69999999 9999998 889999889999999999999998654221 24788999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
++++ .+++++++||++||.++++.. .++.++|..+...|.++..++.+++.+..+
T Consensus 101 ~~~g---~e~al~~~SG~~An~~~i~~l----------------------~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~ 155 (401)
T d1fc4a_ 101 AFLG---MEDAILYSSCFDANGGLFETL----------------------LGAEDAIISDALNHASIIDGVRLCKAKRYR 155 (401)
T ss_dssp HHHT---CSEEEEESCHHHHHHTTHHHH----------------------CCTTCEEEEETTCCHHHHHHHHTSCSEEEE
T ss_pred Hhhc---CCceEEecchhhhhHHHHHHh----------------------cCCCcEEEeCCcchHHHHccccccCceEEE
Confidence 9998 479999999999999999966 223567888888898887776665433211
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
. .|||. +.++++++...
T Consensus 156 ~--------------------------------------------~~~d~------------------~~le~~~~~~~- 172 (401)
T d1fc4a_ 156 Y--------------------------------------------ANNDM------------------QELEARLKEAR- 172 (401)
T ss_dssp E--------------------------------------------CTTCH------------------HHHHHHHHHHH-
T ss_pred E--------------------------------------------cCCCh------------------HHHHHHHHHhh-
Confidence 1 14553 22223222110
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc--cchhcccCCC--CcEE--Ee
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCV--PDIA--CY 687 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~--PDiv--tl 687 (818)
..+.+.++|++|+| +++.|.+.| |+++++||++||++||+||+| ++|+.|. .+..+++++. +|++ |+
T Consensus 173 -~~~~~~~liv~egv-~s~~G~~~~----L~~l~~L~~~~~a~LivDeah-~~g~~g~~G~G~~~~~~~~~~~dii~~tl 245 (401)
T d1fc4a_ 173 -EAGARHVLIATDGV-FSMDGVIAN----LKGVCDLADKYDALVMVDDSH-AVGFVGENGRGSHEYCDVMGRVDIITGTL 245 (401)
T ss_dssp -HTTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTEEEEEECTT-TTTTSSTTSCCHHHHTTCTTCCSEEEEES
T ss_pred -hcccCceEEEEcCC-CCCCCchhh----hhHHHHHHhhcCcEEEehhhh-ccccccCCCCccchhccCCCCCeEEEeec
Confidence 23456689999998 888887776 999999999999999999999 4667776 3457778874 5655 89
Q ss_pred cccccCCccccceeecchHHHhhccCChH---------------------------HHHHH-------HHHHHHcCCCee
Q 003466 688 GKLLTGGVIPLAATLATNAVFDSFVGDSK---------------------------LWDLE-------LIQQISSHRTVQ 733 (818)
Q Consensus 688 gKgLggGy~PlsAvl~~~~i~~~l~~~~~---------------------------~~~~~-------l~~~l~~~~~v~ 733 (818)
+|++|| .+.|++++++++++.+...++ .+.++ +.+.+...+..
T Consensus 246 ~Ka~gg--~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~- 322 (401)
T d1fc4a_ 246 GKALGG--ASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFT- 322 (401)
T ss_dssp SSTTCS--SSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred cccccc--CCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccCCc-
Confidence 999975 467889999999987754322 01111 22233333321
Q ss_pred EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-------cC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------LG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 734 ~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-------~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.....+.++.+.+.++ ..+..++++|+++||++.+ .+ .+||+++++.||+||||+++++|.++.
T Consensus 323 ~~~~~~pIv~v~~~~~--------~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~ 394 (401)
T d1fc4a_ 323 LAGADHAIIPVMLGDA--------VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp BCCSSSSEEEEEEECH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 1112345666666544 5678899999999999874 22 679999999999999999999999998
Q ss_pred HHHH
Q 003466 806 EEFD 809 (818)
Q Consensus 806 ~~l~ 809 (818)
+++.
T Consensus 395 ~~lg 398 (401)
T d1fc4a_ 395 KQLG 398 (401)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 8764
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2e-30 Score=287.41 Aligned_cols=307 Identities=15% Similarity=0.107 Sum_probs=230.7
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHH
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLL 453 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~ 453 (818)
+++++.|.+ +. .||+ +||||+| |++||++.||+|++|+.+++++++..+ ...+.++++.+|+++|+
T Consensus 24 ~~~~~~g~~--i~-~~g~----~~l~f~s---~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA 93 (383)
T d1bs0a_ 24 PVAQGAGRW--LV-ADDR----QYLNFSS---NDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELA 93 (383)
T ss_dssp CCSBCSSSE--EE-ETTE----EEEECSC---CCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHH
T ss_pred ccCCCCCCe--EE-ECCe----EEEEEEc---ccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHH
Confidence 355777874 54 7999 9999999 899999779999999999999997643 23456799999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+++| .+.+++++||+.||.+++... .++.++|..+...|.+...++.+++.+..+
T Consensus 94 ~~~g---~e~al~~~SG~~an~~~i~al----------------------~~~~d~v~~d~~~h~si~~g~~~~~~~~~~ 148 (383)
T d1bs0a_ 94 EWLG---YSRALLFISGFAANQAVIAAM----------------------MAKEDRIAADRLSHASLLEAASLSPSQLRR 148 (383)
T ss_dssp HHHT---CSEEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTCCHHHHHHHHTSSSEEEE
T ss_pred HhcC---CCceEEecccchhhHHHHHhh----------------------cCCCceEEeeccccHHHhhccccCCCcceE
Confidence 9998 479999999999999999876 334578999999999988877665433111
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
+.|||+ +++++.+..
T Consensus 149 --------------------------------------------~~hnd~------------------~~le~~l~~--- 163 (383)
T d1bs0a_ 149 --------------------------------------------FAHNDV------------------THLARLLAS--- 163 (383)
T ss_dssp --------------------------------------------ECTTCH------------------HHHHHHHHS---
T ss_pred --------------------------------------------ecchHH------------------HHHHHHhcc---
Confidence 126774 567777773
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc--chhcccCCCCcEE--Eecc
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIA--CYGK 689 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PDiv--tlgK 689 (818)
...+...|++|++ .++.|.+.| +++|.++|++||++||+||+| |+|-.|+. +..+++++.+|++ ++||
T Consensus 164 --~~~~~~~vv~e~v-~s~~G~i~p----l~~l~~l~~~~~~~livDeah-~~gv~G~~g~G~~~~~~~~~~~~~~t~~k 235 (383)
T d1bs0a_ 164 --PCPGQQMVVTEGV-FSMDGDSAP----LAEIQQVTQQHNGWLMVDDAH-GTGVIGEQGRGSCWLQKVKPELLVVTFGK 235 (383)
T ss_dssp --CCSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTT-TTTTSSGGGCCHHHHTTCCCSEEEEESSS
T ss_pred --cCCCceEEEecCC-CCCCCcccc----hhHHHHHHHhcCcEEEeecce-eeeecCCcccchHHHcCCccccccccccc
Confidence 3455678999998 888888887 999999999999999999999 56666663 3468899999977 4777
Q ss_pred cccCCccccceeecchHHHhhccCChH---------------------HH--------HHH-------HHHHHHcCCCee
Q 003466 690 LLTGGVIPLAATLATNAVFDSFVGDSK---------------------LW--------DLE-------LIQQISSHRTVQ 733 (818)
Q Consensus 690 gLggGy~PlsAvl~~~~i~~~l~~~~~---------------------~~--------~~~-------l~~~l~~~~~v~ 733 (818)
++|+ +.|+++++.++++.+...+. ++ .++ +.+.+.+.+. .
T Consensus 236 a~g~---~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~-~ 311 (383)
T d1bs0a_ 236 GFGV---SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPF-T 311 (383)
T ss_dssp TTSS---CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSC-E
T ss_pred cccc---cccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCC-c
Confidence 7664 45679999999887754322 00 011 1222223332 1
Q ss_pred EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-------cC-CEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------LG-NVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 734 ~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-------~g-~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
-+.+...++.+.+.++ ..+..+++.|+++||++.+ .| .++|+++++.||+||||+++++|..+
T Consensus 312 ~~~~~s~Ii~v~~g~~--------~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 312 LADSCSAIQPLIVGDN--------SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp ECSCCSSBCCEEEESH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 1223344444545433 5688899999999999975 23 58999999999999999999998764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.95 E-value=1.4e-27 Score=264.76 Aligned_cols=295 Identities=11% Similarity=0.004 Sum_probs=219.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e 475 (818)
+++||+| |+|||.+.||+|++|+.+++++++..+ ..++.++++.+|+++|+++++ .+.+++++||+.||.
T Consensus 46 ~~~~FsS---ndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g---~e~all~~sG~~An~ 119 (396)
T d2bwna1 46 DITVWCG---NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ---KEAALVFSSAYNAND 119 (396)
T ss_dssp EEEECSC---SCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT---CSEEEEESCHHHHHH
T ss_pred EEEEEEc---ccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhC---CCceeeeecchHHHH
Confidence 9999999 999999889999999999999987643 334567899999999999998 478999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
+++..... .++..+|..+...|.+...++.+++.+..++
T Consensus 120 ~~i~~l~~--------------------~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f--------------------- 158 (396)
T d2bwna1 120 ATLSTLRV--------------------LFPGLIIYSDSLNHASMIEGIKRNAGPKRIF--------------------- 158 (396)
T ss_dssp HHHHHHHH--------------------HSTTCEEEEETTCCHHHHHHHHHSCCCEEEE---------------------
T ss_pred HHHHHHhc--------------------ccCCCceeehhhhhhccchhhhccccCceEe---------------------
Confidence 99996511 1234799999999999999888886542221
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.|||+ +.+++.++. ..+.+-..|++|.| .++.|.
T Consensus 159 -----------------------~Hnd~------------------~~l~~l~~~----~~~~~~~~iv~egv-ySmdGd 192 (396)
T d2bwna1 159 -----------------------RHNDV------------------AHLRELIAA----DDPAAPKLIAFESV-YSMDGD 192 (396)
T ss_dssp -----------------------CTTCH------------------HHHHHHHHH----SCTTSCEEEEEESB-CTTTCC
T ss_pred -----------------------ecchH------------------HHhhhHHhh----hcccCceeEEEEee-ccCccc
Confidence 16774 345555554 23445568999998 888898
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc--cchhcccCCC--CcEE--EecccccCCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCV--PDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~--PDiv--tlgKgLggGy~PlsAvl~~~~i~~ 709 (818)
+.| +++|.+||++||+.||+||+| |||-.|+ .+..+++|+. .||+ ||||++|+. .|.|++++++.+
T Consensus 193 ~ap----l~~l~~L~~~y~~~L~vDeAH-s~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~---Gg~v~~~~~~i~ 264 (396)
T d2bwna1 193 FGP----IKEICDIAEEFGALTYIDEVH-AVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF---GGYIAASARMVD 264 (396)
T ss_dssp BCC----HHHHHHHHHHHTCEEEEECTT-TTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC---CEEEEECHHHHH
T ss_pred ccc----cHhHHHHhhhhcceeeeccce-eeeeeccccccchhhcCCceeeeeeeeccccccccc---ccccchhHHHHH
Confidence 888 999999999999999999999 7877776 3445677774 4665 899999841 234899999999
Q ss_pred hccCChH---------------------HH--------HHH-------HHHHHHcCCCeeEEEeeeeEEEEEEecCcccC
Q 003466 710 SFVGDSK---------------------LW--------DLE-------LIQQISSHRTVQRVVALGTLCAIELQAAGCNA 753 (818)
Q Consensus 710 ~l~~~~~---------------------~~--------~~~-------l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~ 753 (818)
.+...++ +. +.. +.+.+...+... ......++.+.+.++
T Consensus 265 ~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~-~~~~spIvpv~ig~~---- 339 (396)
T d2bwna1 265 AVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPI-IDHGSHIVPVVIGDP---- 339 (396)
T ss_dssp HHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCB-CCCSSSCEEEECCCH----
T ss_pred HHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCc-CCCCCCEEEEEeCCH----
Confidence 8864332 00 001 111222222100 112344566655443
Q ss_pred CCchHHHHHHHHHHH-hCCceEee-------cC-CEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLR-EDGVYMRP-------LG-NVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~-e~Gvlv~p-------~g-~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
..+..+++.|+ ++||++.+ .| .++|+++++.||++|||+++++|++.
T Consensus 340 ----~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 340 ----VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp ----HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 56788888866 68999975 23 78999999999999999999999875
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1e-21 Score=197.72 Aligned_cols=206 Identities=22% Similarity=0.276 Sum_probs=162.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCC------CchHHHHHhccCCccccCCCcccc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHD------SDSRFLFTKLPSLSLRRNFPSSLI 111 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~------~d~~~~~~~~~~~~~~~~~~~~~~ 111 (818)
|.+|||||+|||||||+|++|+++|. ++|++|.++||+.+|+... .+...+.... ++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa-----~~G~rVl~id~d~~g~~~~~~~~~~~~~~~~~~~~-~~----------- 64 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAK-----AAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNS-SL----------- 64 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTC-SS-----------
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHH-----HCCCeEEEECccccCCCCCCCCcchhHHHHHHHhh-cc-----------
Confidence 68999999999999999999999994 8999999999998876432 1222222221 00
Q ss_pred cccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCC
Q 003466 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGV 191 (818)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~ 191 (818)
+ .......++.+..+..+......+ ...
T Consensus 65 --------------------~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 92 (224)
T d1byia_ 65 --------------------Q-------------------------------LDYATVNPYTFAEPTSPHIISAQE-GRP 92 (224)
T ss_dssp --------------------C-------------------------------CCHHHHCSEEESSCSCHHHHHHHH-TCC
T ss_pred --------------------C-------------------------------cccccccccccccchhhhhhhhhh-hhh
Confidence 0 011224566677777777777776 777
Q ss_pred CChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003466 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (818)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (818)
.....+.+.+...... +|++++++..++..+......+.++++....++++|++...++.+++..+.
T Consensus 93 ~~~~~~~~~~~~~~~~-------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~~~~~~~~~~~~~~~ 159 (224)
T d1byia_ 93 IESLVMSAGLRALEQQ-------------ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA 159 (224)
T ss_dssp CCHHHHHHHHHHHHTT-------------CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhc-------------cceEeecccccccccccccchhhcccccccceeeEEEeeccchhHHHHHHH
Confidence 8888999988887765 899999999999888877888999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCCEEe-cCCCCCCCcc-hhhhhhhh
Q 003466 272 ESLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSN-DLMEWFDE 327 (818)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~~~-~~~~~l~~ 327 (818)
+.++..+..+.|+|+|++... +.+++++.+ ++|||| ||++++.... +..++++.
T Consensus 160 ~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~--gi~vlG~IP~~~~~~e~~~~~~~l~l 221 (224)
T d1byia_ 160 QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMI--PAPLLGEIPWLAENPENAATGKYINL 221 (224)
T ss_dssp HHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHS--SSCEEEEECCCTTCTTCCCCGGGCCG
T ss_pred HHHhccCCccEEEEEeCcCCCchHHHHHHHHHHHHh--CCCEEEECCCCCCCccccccccccCc
Confidence 999999999999999998321 244556666 999999 9998876433 66777653
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.84 E-value=6.4e-21 Score=214.97 Aligned_cols=327 Identities=12% Similarity=-0.012 Sum_probs=196.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+.|.+|+...++. ++ +++. ..++ .+ ..++...+|++++++++| .++++|++||++||+.|++
T Consensus 43 ~~id~~sd~~t~~~~~~-~~---a~~~-~gd~----~y--~~~~~~~~le~~~a~l~g---~~~~~~~~sGt~A~~~a~~ 108 (465)
T d1ax4a_ 43 VYIDLLTDSGTNAMSDH-QW---AAMI-TGDE----AY--AGSRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFP 108 (465)
T ss_dssp CSEECSCSSSCCCEEHH-HH---HHHH-TCCC----CS--SSCHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHH
T ss_pred eeeecccccchhhhhHH-HH---HHHh-hhhh----hh--ccChHHHHHHHHHHHHHC---CCEEEECCCcHHHHHHHHH
Confidence 78999998888776655 32 1221 1111 11 125566799999999998 5899999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccccccc-CCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~t-g~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
++ +.+..+.|. .++. +|. ..||+.+..+.... |.... .. ..+.
T Consensus 109 ~~-~~~g~~~~~------------~~~~-~i~--~~~h~~t~~~~~~~~g~~~~-~~-------------~~~~------ 152 (465)
T d1ax4a_ 109 VL-LKYKQKEGK------------AKNP-VFI--SNFHFDTTAAHVELNGCKAI-NI-------------VTEK------ 152 (465)
T ss_dssp HH-HHHHHHTTC------------CSSC-EEE--ESSCCHHHHHHHHHTTCEEE-EC-------------BCGG------
T ss_pred HH-HHHHHhcCC------------CCCe-EEe--ccchhhhhHHHHHHcCCeee-cc-------------cccc------
Confidence 99 555544432 2222 332 46787776654333 22110 00 0000
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
......+.... -..| .+.+++.|.. ..++.++++++|++ ++.+|..++
T Consensus 153 ~~~~~~~~~~~---------~~~d------------------~~~l~~~i~~----~~~~~~~~~~~~~~-~~~~g~~~~ 200 (465)
T d1ax4a_ 153 AFDSETYDDWK---------GDFD------------------IKKLKENIAQ----HGADNIVAIVSTVT-CNSAGGQPV 200 (465)
T ss_dssp GGCTTSCCTTT---------TCBC------------------HHHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCC
T ss_pred cCCCCCCCCcc---------CccC------------------HHHHHHHHHh----hccccccceeeccc-cccCceecC
Confidence 00000000000 0011 2567777764 34567899999998 999999999
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeeccc------CcccCCccchhcccCCC------CcEEEecccccCCccccceeecc-h
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFT------GFWRLGVETTADLLGCV------PDIACYGKLLTGGVIPLAATLAT-N 705 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~T------GfGRtG~~~a~e~~gv~------PDivtlgKgLggGy~PlsAvl~~-~ 705 (818)
+.+++++|+++|++||++||+||+++ +++|++.+++.+.+++. .|+++++|.-++| .|.+++++. +
T Consensus 201 ~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~-~~~~g~l~~~~ 279 (465)
T d1ax4a_ 201 SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL-LNIGGLVAIRD 279 (465)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC-CSSCEEEEESS
T ss_pred CHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcc-cccceeEeecc
Confidence 99999999999999999999999987 56777777776666554 4678888888776 466655543 2
Q ss_pred H--HHhhc-------cCChH-----------------------HHH------HHHHHHHHcC--CCeeEEEeeeeEEEEE
Q 003466 706 A--VFDSF-------VGDSK-----------------------LWD------LELIQQISSH--RTVQRVVALGTLCAIE 745 (818)
Q Consensus 706 ~--i~~~l-------~~~~~-----------------------~~~------~~l~~~l~~~--~~v~~vrg~Gl~~~ie 745 (818)
. +++.. ..... .+. +.+.+.|++. +.+...++.+.+...+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~ 359 (465)
T d1ax4a_ 280 NEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCK 359 (465)
T ss_dssp CHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEST
T ss_pred hHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhcCccccCCCcceeeeehh
Confidence 1 11110 00000 000 1233445443 3344444444443332
Q ss_pred EecCcccCCCchHHHHHHHHHHHhCCceEee------------------cCCEEEEE-CCCCChHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLREDGVYMRP------------------LGNVIYLM-CGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p------------------~g~~ir~~-ppl~~t~edId~~~~~l~~~l~ 806 (818)
...... ............+.+.+.||.... ..+.+||. |+.++|+||||+++++|+++++
T Consensus 360 ~~~~~~-~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~ 438 (465)
T d1ax4a_ 360 KLVPQI-PGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE 438 (465)
T ss_dssp TTCTTS-CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred hhcCCC-ccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 211110 000111223345556678887542 23589996 6688999999999999999887
Q ss_pred HHHH
Q 003466 807 EFDK 810 (818)
Q Consensus 807 ~l~~ 810 (818)
+.+.
T Consensus 439 ~~~~ 442 (465)
T d1ax4a_ 439 KFAT 442 (465)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7654
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=4.6e-20 Score=195.05 Aligned_cols=308 Identities=12% Similarity=0.030 Sum_probs=187.9
Q ss_pred eecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHH
Q 003466 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (818)
Q Consensus 402 lD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA 481 (818)
|||.|-..+.. +|++++|+.++.. +...+ +..+...+|+++|++++| .++++|++||++||+.||+.+
T Consensus 2 ~~~~~~~~t~p-----~p~v~~A~~~a~~--g~~~y--g~~p~~~~le~~lA~~~G---~~~~~~~~sGt~A~~~al~a~ 69 (343)
T d1m6sa_ 2 IDLRSDTVTKP-----TEEMRKAMAQAEV--GDDVY--GEDPTINELERLAAETFG---KEAALFVPSGTMGNQVSIMAH 69 (343)
T ss_dssp EECSCGGGCCC-----CHHHHHHHHTCCC--CCGGG--TCCHHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHHH
T ss_pred cccccccCCCC-----CHHHHHHHHhhhc--CCccc--CCCHHHHHHHHHHHHHHC---CCeEEEeCCHHHHHHHHHHHH
Confidence 56655433322 7999999987642 21111 235788999999999998 478999999999999999977
Q ss_pred HHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCccee
Q 003466 482 FRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561 (818)
Q Consensus 482 ~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~ 561 (818)
+ ..| ..++..... |.++............ ..
T Consensus 70 -~----~~g----------------~~~~~~~~~-~~~~~~~~~~~~~~~~---------------------------~~ 100 (343)
T d1m6sa_ 70 -T----QRG----------------DEVILEADS-HIFWYEVGAMAVLSGV---------------------------MP 100 (343)
T ss_dssp -C----CTT----------------CEEEEETTC-HHHHSSTTHHHHHTCC---------------------------EE
T ss_pred -h----ccC----------------Cceeccccc-cceeeecccccccccc---------------------------ee
Confidence 1 112 134444433 3222221111110000 00
Q ss_pred ecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHH
Q 003466 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL 641 (818)
Q Consensus 562 v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~ 641 (818)
...|.... ..| .+.++..+.... .+..++..+++++. ....|...+|.+
T Consensus 101 ~~~~~~~~----------~~~------------------~~~~~~~i~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~ 149 (343)
T d1m6sa_ 101 HPVPGKNG----------AMD------------------PDDVRKAIRPRN--IHFPRTSLIAIENT-HNRSGGRVVPLE 149 (343)
T ss_dssp EEECEETT----------EEC------------------HHHHHHHSCCSC--TTSCCEEEEEEESS-BTTTTSBCCCHH
T ss_pred eccccccC----------ccC------------------HHHHHHhhhhhh--cccccccccccccc-cccCCceecCHH
Confidence 00110000 111 133444454311 23346677777776 566666777999
Q ss_pred HHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH-----
Q 003466 642 FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK----- 716 (818)
Q Consensus 642 fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~----- 716 (818)
++++|+++|++||+++|+||+++++...+..+.........+..+++|..+.|..+.++++...+.+........
T Consensus 150 ~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (343)
T d1m6sa_ 150 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGG 229 (343)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhhHhhCcccccc
Confidence 999999999999999999999987765555554444444556667777666555678888888776543321111
Q ss_pred ------------------------HH--HHHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHh
Q 003466 717 ------------------------LW--DLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLRE 769 (818)
Q Consensus 717 ------------------------~~--~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e 769 (818)
.. ...+.+.+...+........ ..++.+.+.... ..+..+++.|++
T Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~a~~l~~~L~~ 302 (343)
T d1m6sa_ 230 MRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK-------VNAHGFIEALRN 302 (343)
T ss_dssp CSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS-------SCHHHHHHHHHH
T ss_pred cchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCc-------ccHHHHHHHHHH
Confidence 00 01112222222222111111 234444443321 236678999999
Q ss_pred CCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 770 DGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 770 ~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+||++++. .+.+|+++++.+|+||||+++++|+++++++
T Consensus 303 ~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 303 SGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp HTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999985 4899999999999999999999999999886
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=2.7e-19 Score=188.59 Aligned_cols=299 Identities=9% Similarity=0.015 Sum_probs=181.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+|||.| +|.++. ||+|++|++++..... . ..+..+...++.++++++++.+ ..++|++||+|||+.|++
T Consensus 3 ~~~~f~s----~n~~g~-~P~v~~A~~~a~~~~~--~-~~~~~~~~~~l~~~la~~~g~~--~~v~f~~sGt~An~~a~~ 72 (345)
T d1v72a1 3 PALGFSS----DNIAGA-SPEVAQALVKHSSGQA--G-PYGTDELTAQVKRKFCEIFERD--VEVFLVPTGTAANALCLS 72 (345)
T ss_dssp CCCBCSC----GGGCCC-CHHHHHHHHHTTSSCC--C-STTCSHHHHHHHHHHHHHHTSC--CEEEEESCHHHHHHHHHH
T ss_pred CCcCcCC----CCCCCC-CHHHHHHHHHHhccCc--c-ccCCCHHHHHHHHHHHHHHCCC--cEEEECCchHHHHHHHHH
Confidence 5789997 345557 9999999998764322 1 1235788899999999999853 468999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc---cCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~---tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
.+ +.. ...++. ....|.+......+ ++.. +.
T Consensus 73 ~~-~~~--------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~----------------------- 106 (345)
T d1v72a1 73 AM-TPP--------------------WGNIYC-HPASHINNDECGAPEFFSNGA-KL----------------------- 106 (345)
T ss_dssp TS-CCT--------------------TEEEEE-CTTSHHHHSSTTHHHHHTTSC-EE-----------------------
T ss_pred HH-Hhc--------------------CCcccc-ccccceeeechhhHHHhcCcc-cc-----------------------
Confidence 87 211 112222 22233322111111 1110 00
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
.+ .+.... ..+ .+.++..+.... .......+++++++ ....+..
T Consensus 107 ----~~-~~~~~~----------~~~------------------~~~l~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~ 150 (345)
T d1v72a1 107 ----MT-VDGPAA----------KLD------------------IVRLRERTREKV--GDVHTTQPACVSIT-QATEVGS 150 (345)
T ss_dssp ----EE-CCCGGG----------CCC------------------HHHHHHHTTSST--TCTTSCEEEEEEEE-SSCTTSC
T ss_pred ----cc-cccccc----------ccc------------------HHHhhhhhcccc--cccccccceeeeee-ccccccc
Confidence 00 000000 011 144555554311 12234566777776 5656666
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC--CCcEEEecccccCCccccceeecchH-HHhhccC
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDIACYGKLLTGGVIPLAATLATNA-VFDSFVG 713 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv--~PDivtlgKgLggGy~PlsAvl~~~~-i~~~l~~ 713 (818)
..+..+++++.++|++||+++++||+++++++++..+....... .++.++++|..++++ ..+....... .......
T Consensus 151 ~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 229 (345)
T d1v72a1 151 IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVL-AAEAIVLFNTSLATEMSY 229 (345)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCS-SCEEEEESSGGGHHHHHH
T ss_pred cccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccc-cccccccchhhhhhhccc
Confidence 67899999999999999999999999998878777666555444 455778888877763 4444443322 2211110
Q ss_pred ChH---------------------------------HHHHHHHHHHHcCCCeeEEEeee-eEEEEEEecCcccCCCchHH
Q 003466 714 DSK---------------------------------LWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLY 759 (818)
Q Consensus 714 ~~~---------------------------------~~~~~l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~~~~~~~~~ 759 (818)
... .....+.+.+.+++.+.-....+ -+..+.+..
T Consensus 230 ~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~~----------- 298 (345)
T d1v72a1 230 RRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDS----------- 298 (345)
T ss_dssp HHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEECH-----------
T ss_pred cccccccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcCH-----------
Confidence 000 01112334455666654333332 334444321
Q ss_pred HHHHHHHHHhCCceEee---cCCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRP---LGNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p---~g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.++++|+++|+.+.+ ..+++||+++..+|+||||+++++|+++
T Consensus 299 --~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 299 --AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp --HHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356789999998864 2489999999999999999999998864
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.5e-18 Score=195.64 Aligned_cols=328 Identities=11% Similarity=0.048 Sum_probs=194.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|||+.|.+++....++ +..++.. +.-.+ ..++...+|++++++++| .+.++|++||++||+.|++
T Consensus 42 ~~idl~sd~~t~~~~~~--------~~a~~~~-gd~~Y--~~~~~~~~le~~~a~l~G---~~~~~~~~sGt~A~~~a~~ 107 (467)
T d2v1pa1 42 VFIDLLTDSGTGAVTQS--------MQAAMMR-GDEAF--SGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp CSEECSCCTTCSCCCHH--------HHHHTTS-CCCCS--SSCHHHHHHHHHHHHHTC---CSEEEEECSSTTTHHHHHH
T ss_pred eeeeccccccchhhHHH--------HHhhccc-cchhh--cCCchHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHH
Confidence 58898887777554433 2222211 11111 236778899999999998 4799999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
++ ..+....+. ..+..++...+.||+.+.+++.++|.....-. ...+. .++
T Consensus 108 ~~-~~~g~~~~~------------~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~------~~~~~--~~~-------- 158 (467)
T d2v1pa1 108 VL-IKKREQEKG------------LDRSKMVAFSNYFFDTTQGHSQINGCTVRNVY------IKEAF--DTG-------- 158 (467)
T ss_dssp HH-HHHHHHHHC------------CCTTTCEEEESSCCHHHHHHHHHTTCEEEECB------CTTTT--CTT--------
T ss_pred HH-hhccceEec------------CCCCcEEEEecccccccHHHHHHcCCeeeecc------ccccc--ccc--------
Confidence 98 444332211 34566788999999999888888875421100 00000 000
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
.+..+ ..+.| .+.+++.+.. .++..++++++|++ ++.+|..+++
T Consensus 159 ----~~~~~---------~~~~d------------------~~~l~~~i~~----~~~~~~~~i~~e~~-~~~~gg~~~~ 202 (467)
T d2v1pa1 159 ----VRYDF---------KGNFD------------------LEGLERGIEE----VGPNNVPYIVATIT-SNSAGGQPVS 202 (467)
T ss_dssp ----SCCTT---------TTCBC------------------HHHHHHHHHH----HCGGGCCCEEEESS-BCGGGCBCCC
T ss_pred ----ccccc---------ccCCC------------------HHHHHHHHhh----cCccccceeeecce-eeccccccCC
Confidence 00000 00122 2567777764 45667899999998 8998888999
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccC---cccCCccchhcccC---------CCCcEEEecccccCCccccceeecc-h-
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTG---FWRLGVETTADLLG---------CVPDIACYGKLLTGGVIPLAATLAT-N- 705 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TG---fGRtG~~~a~e~~g---------v~PDivtlgKgLggGy~PlsAvl~~-~- 705 (818)
.+++++|+++|++||++||+||+++. .++.+..+++...+ -..|++++++.-+++ .|.|++++. +
T Consensus 203 ~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~-~~~gg~i~~~~~ 281 (467)
T d2v1pa1 203 LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM-VPMGGLLCMKDD 281 (467)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC-CSSCEEEEECSG
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCC-CCCceeEEecch
Confidence 99999999999999999999999852 22233333333322 247888887765555 466766654 2
Q ss_pred HHHhhcc---------CCh--------H----------------HHH------HHHHHHHHcCCC-eeEEEeeeeEEEEE
Q 003466 706 AVFDSFV---------GDS--------K----------------LWD------LELIQQISSHRT-VQRVVALGTLCAIE 745 (818)
Q Consensus 706 ~i~~~l~---------~~~--------~----------------~~~------~~l~~~l~~~~~-v~~vrg~Gl~~~ie 745 (818)
.+..... ... . +++ +.+.+.|.+... +..+.+.+......
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~ 361 (467)
T d2v1pa1 282 SFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAG 361 (467)
T ss_dssp GGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSCEEEEHH
T ss_pred hhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCCcccCCCccceeecch
Confidence 2221110 000 0 111 124455555443 33333333322221
Q ss_pred EecCcccCCCchHHHH-HHHHHHHhCCceEe------------------ecCCEEEEECC-CCChHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAA-SLLKKLREDGVYMR------------------PLGNVIYLMCG-PCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~-~~~~~l~e~Gvlv~------------------p~g~~ir~~pp-l~~t~edId~~~~~l~~~l 805 (818)
..-. .......... ...+.+.+.||-.. +..+.+||.+| .++|+||||+++++|++++
T Consensus 362 ~~~~--~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~ 439 (467)
T d2v1pa1 362 KLLP--HIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVK 439 (467)
T ss_dssp HHST--TSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHH
T ss_pred hhcC--CcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 1111 0111111122 23444557777542 12367999865 5889999999999999998
Q ss_pred HHHH
Q 003466 806 EEFD 809 (818)
Q Consensus 806 ~~l~ 809 (818)
+..+
T Consensus 440 ~~~~ 443 (467)
T d2v1pa1 440 ENAA 443 (467)
T ss_dssp HTGG
T ss_pred HHHH
Confidence 7654
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.42 E-value=5.6e-13 Score=143.03 Aligned_cols=200 Identities=13% Similarity=0.076 Sum_probs=121.3
Q ss_pred CHHHHHHHHHhhhhcccccCC--CC-----CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 418 QIELARDMGYTAARFGHVMFP--EN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~--~~-----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
.|+..+|+.+..+.++...+. +. ..+.+..++++|+++++ .+.++++++|++||..|+... .++|
T Consensus 15 ~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g---~e~~~~t~g~t~a~~~~~~al-----~~~g 86 (364)
T d2e7ja1 15 TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG---CDVARVTNGAREAKFAVMHSL-----AKKD 86 (364)
T ss_dssp CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT---SSEEEEESSHHHHHHHHHHHH-----CCTT
T ss_pred CHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhC---cCEEEEECcHHHHHHHHHHHH-----hCCC
Confidence 677777777644433221110 00 11467889999999998 478999999999999999865 1222
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
..||+ +...|.+...++...|..... +|
T Consensus 87 ----------------d~Vi~-~~~~h~s~~~~~~~~g~~v~~------------------------------v~----- 114 (364)
T d2e7ja1 87 ----------------AWVVM-DENCHYSSYVAAERAGLNIAL------------------------------VP----- 114 (364)
T ss_dssp ----------------CEEEE-ETTCCHHHHHHHHHTTCEEEE------------------------------EC-----
T ss_pred ----------------cEEEe-ecccccccchHHHhccceEEE------------------------------ee-----
Confidence 24554 555555554444444332110 11
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
+++. ..+. -+ .+.+++.+.+. ....+++.|+++.+ .+..|.+.+ +++|.++|
T Consensus 115 ---------~~~~-~~~~--i~--------~~~l~~~i~~~---~k~~~~~lv~i~~~-~n~tG~~~~----l~~I~~ia 166 (364)
T d2e7ja1 115 ---------KTDY-PDYA--IT--------PENFAQTIEET---KKRGEVVLALITYP-DGNYGNLPD----VKKIAKVC 166 (364)
T ss_dssp ---------CCCT-TTCC--CC--------HHHHHHHHHHH---TTTSCEEEEEEESS-CTTTCCCCC----HHHHHHHH
T ss_pred ---------eccc-cccc--cC--------HHHHHhhhhhh---cccCCceEEEeecC-CCCCceeec----chhheecc
Confidence 0000 0000 00 14566666542 23456788888876 788888876 89999999
Q ss_pred HhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhc
Q 003466 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l 711 (818)
++||+++|+||+| ++|..+.- ...+| .|+++++ |.++++ -.+|.+++++++.+.+
T Consensus 167 ~~~~i~livD~a~-~~g~~~~~--~~~~g--~D~~~~S~~K~~~~~-g~~g~l~~~~~~~~~~ 223 (364)
T d2e7ja1 167 SEYDVPLLVNGAY-AIGRMPVS--LKEIG--ADFIVGSGHKSMAAS-GPIGVMGMKEEWAEIV 223 (364)
T ss_dssp HTTTCCEEEECTT-TBTTBCCC--HHHHT--CSEEEEEHHHHSSCC-SSCEEEEECTTTTTTT
T ss_pred ccccchhhccccc-hhhhhhhc--ccccc--cceeeeccccccCCC-CCEEEEEECHHHHHHH
Confidence 9999999999999 56554321 12233 5888766 999864 2567788888776644
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.38 E-value=7.8e-12 Score=135.52 Aligned_cols=297 Identities=13% Similarity=0.119 Sum_probs=174.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCC-----CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~-----~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
-|+|.. ..|-. ...|.+|+.+.++.+....... ...+...++-+.|+++++.. -++++|+++|++|+
T Consensus 9 ~yld~~------~~~~~-p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~i~~~~g~t~a~ 80 (381)
T d1elua_ 9 TYFNFG------GQGIL-PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGC 80 (381)
T ss_dssp EECCTT------TCCCC-CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHH
T ss_pred EEeeCC------cccCC-CHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCC-cccEEEECChHHHh
Confidence 588854 36766 7779999998876543211000 11233445556788888743 36899999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
..++... + ..+ ...|++.+..|++.. .++...... .|
T Consensus 81 ~~~~~~l-~---~~~----------------g~~i~~~~~~~~s~~-~~~~~~~~~-------------~g--------- 117 (381)
T d1elua_ 81 DIVLWGL-D---WHQ----------------GDEILLTDCEHPGII-AIVQAIAAR-------------FG--------- 117 (381)
T ss_dssp HHHHHHS-C---CCT----------------TCEEEEETTCCHHHH-HHHHHHHHH-------------HC---------
T ss_pred hhcchhh-h---hcC----------------CceEEEeccccceee-ecccccccc-------------cc---------
Confidence 8887754 1 111 235666666665422 221110000 00
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
.....+|... ..+. +..++.+++ ....++.++++..+ ++..|
T Consensus 118 ----~~~~~v~~~~-----------~~~~------------------~~~~~~l~~----~i~~~t~~v~i~~~-~n~tG 159 (381)
T d1elua_ 118 ----ITYRFFPVAA-----------TLNQ------------------GDAAAVLAN----HLGPKTRLVILSHL-LWNTG 159 (381)
T ss_dssp ----CEEEEECCGG-----------GSSS------------------SCHHHHHHT----TCCTTEEEEEEESB-CTTTC
T ss_pred ----cccccccccc-----------cccc------------------chHHHHHHh----hhcccccccccccc-ccccc
Confidence 0000111100 0000 001122222 22457889999987 88889
Q ss_pred cccCCHHHHHHHHHHHHhc----CCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHH
Q 003466 635 MHMVDPLFQRILVKECQNR----KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~----gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~ 708 (818)
.+.+ +++|.++|++| |+++++|.+| ++|.. . ...-...+|+++++ |.+++. ..+|.+.++++..
T Consensus 160 ~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~-~~g~~--~--~~~~~~~~D~~~~s~~K~~~~p-~G~g~l~~~~~~~ 229 (381)
T d1elua_ 160 QVLP----LAEIMAVCRRHQGNYPVRVLVDGAQ-SAGSL--P--LDFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCL 229 (381)
T ss_dssp CBCC----HHHHHHHHHHCCSSSCCEEEEECTT-TBTTB--C--CCTTTSCCSEEEEESSSTTCCC-TTCEEEEECTTTG
T ss_pred ccch----hhHHHHHHhhccccccccccccccc-ccccc--c--cccccccccccccccccccccc-chhhHHHhhHHHH
Confidence 8887 88999999985 6999999999 45422 1 12223357887654 888765 3566777777666
Q ss_pred hhccCC----------------------------hH-----------------------------HHHHHHHHHHHcCCC
Q 003466 709 DSFVGD----------------------------SK-----------------------------LWDLELIQQISSHRT 731 (818)
Q Consensus 709 ~~l~~~----------------------------~~-----------------------------~~~~~l~~~l~~~~~ 731 (818)
+.+... .. .+.+.+.+.|+..+.
T Consensus 230 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~ 309 (381)
T d1elua_ 230 GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPH 309 (381)
T ss_dssp GGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCC
Confidence 543210 00 001123344555554
Q ss_pred eeEE---EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 732 VQRV---VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 732 v~~v---rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+.-+ ...+.++.+.+... .....+.+.|.++||.++.. .+.+|+++....|++|||+++++|++
T Consensus 310 ~~~~~~~~~~~~~vsf~~~~~--------~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e 378 (381)
T d1elua_ 310 VHCLATSAPQAGLVSFTVDSP--------LGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 378 (381)
T ss_dssp EEESCSSCCSSSEEEEEECSS--------SCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred eEecCCCCccccEEEEEcCCC--------CCHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCHHHHHHHHHHHHh
Confidence 3211 23455666665432 12456788999999998764 38999999998999999999998865
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=1.4e-11 Score=134.18 Aligned_cols=300 Identities=13% Similarity=0.095 Sum_probs=180.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
++||+..|. . .+...|+|++|++++++... .+....+..+....+++.+.+..+.+ ..+.+++++++++|+..+
T Consensus 32 ~vi~l~~g~--p--~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~ 107 (382)
T d1b5pa_ 32 DLVALTAGE--P--DFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL 107 (382)
T ss_dssp CCEECCCSS--C--SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred CeEECCCCC--C--CCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHH
Confidence 778876642 2 23326899999999887532 12222344567778888887754432 136899999889999998
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.. ...| ..|+..+-+|.+-. ..+...|..
T Consensus 108 ~~~l-----~~~g----------------d~vl~~~P~y~~~~-~~~~~~g~~--------------------------- 138 (382)
T d1b5pa_ 108 FQAI-----LDPG----------------DEVIVLSPYWVSYP-EMVRFAGGV--------------------------- 138 (382)
T ss_dssp HHHH-----CCTT----------------CEEEEEESCCTHHH-HHHHHTTCE---------------------------
T ss_pred HHHh-----CCCC----------------CEEEECCCCcHHHH-HHHHHhcCe---------------------------
Confidence 8865 1222 36888888888743 222222211
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCcc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMH 636 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iA-AVIvEPV~~g~gG~~ 636 (818)
.+.+|-.. -++ |. .| .+.+++.+. .++. .++..| ++-.|.+
T Consensus 139 ---~~~v~~~~-----------~~~----~~--~d--------~~~l~~~~~--------~~~~~i~~~~P--~NPTG~~ 180 (382)
T d1b5pa_ 139 ---VVEVETLP-----------EEG----FV--PD--------PERVRRAIT--------PRTKALVVNSP--NNPTGAV 180 (382)
T ss_dssp ---EEEEECCG-----------GGT----TC--CC--------HHHHHTTCC--------TTEEEEEEESS--CTTTCCC
T ss_pred ---EEEEeccc-----------ccc----cC--CC--------HHHHHHhCC--------CCCeEEEECCC--CCCcchh
Confidence 01111000 000 00 00 134444332 3444 455556 7778876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc----EEEeccccc-CCccccceeecchHHHhhc
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD----ivtlgKgLg-gGy~PlsAvl~~~~i~~~l 711 (818)
. +.+-+++|.++|++||+++|.||++..|...|+...... ..+| +.++||.++ .| +-+|.+++++++++.+
T Consensus 181 ~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~i~~~s~SK~~~~~G-lR~G~~~~~~~~i~~~ 256 (382)
T d1b5pa_ 181 Y-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR--VAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAM 256 (382)
T ss_dssp C-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG--TCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHH--cCCCCEEEEecchhhccCcH-hheEEEEECHHHHHHH
Confidence 6 899999999999999999999999988755565433221 2233 337999998 67 7999999999987755
Q ss_pred cCCh--------H-----------------HH----H-------HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCC
Q 003466 712 VGDS--------K-----------------LW----D-------LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAG 754 (818)
Q Consensus 712 ~~~~--------~-----------------~~----~-------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~ 754 (818)
.... . .+ . +.+.+.+...+. .-+... |.++-+++....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~p~gg~~~~~~~~~~~---- 331 (382)
T d1b5pa_ 257 ASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGL-KAVRPSGAFYVLMDTSPIA---- 331 (382)
T ss_dssp HHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CBCCCSBTTEEEEECTTTC----
T ss_pred HHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCC-eEecCCceEEEeEeCCCCC----
Confidence 3210 0 00 0 011222233332 222333 444445553221
Q ss_pred CchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.....+.+.|.++||++.|+ .+.+|+... .++|+|++++++|.++
T Consensus 332 ---~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~--~~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 332 ---PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARV 381 (382)
T ss_dssp ---SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred ---CCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEc--CCHHHHHHHHHHHHHh
Confidence 12455778899999999983 267888764 5788999999988765
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.36 E-value=4.4e-11 Score=128.58 Aligned_cols=170 Identities=14% Similarity=0.180 Sum_probs=110.4
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc---EEEeccccc-CC
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD---IACYGKLLT-GG 694 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD---ivtlgKgLg-gG 694 (818)
++.+|++..- ++..|... +.+.+++|.++|++|++++|.||++..|...+...... ..-.+. +.++||.+| .|
T Consensus 144 ~~~~v~l~nP-~NPtG~~~-~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~l~G 220 (355)
T d1lc5a_ 144 DLDCLFLCTP-NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPA-LKDNPHIWVLRSLTKFYAIPG 220 (355)
T ss_dssp TCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGG-CTTCTTEEEEEESTTTTTCTT
T ss_pred ccceeeeecc-cCcccccc-hhhhhhhhhhhccccccccccccceeeeeeeccccccc-ccccccceeeccccccccccc
Confidence 3444444442 78888866 89999999999999999999999998776555432221 122223 338999988 67
Q ss_pred ccccceeecchHHH-hhcc---CC---hH---------------------HHH---HHHHHHHHcCCCeeEEEeeeeEEE
Q 003466 695 VIPLAATLATNAVF-DSFV---GD---SK---------------------LWD---LELIQQISSHRTVQRVVALGTLCA 743 (818)
Q Consensus 695 y~PlsAvl~~~~i~-~~l~---~~---~~---------------------~~~---~~l~~~l~~~~~v~~vrg~Gl~~~ 743 (818)
+-+|.++++++.. +.+. .. .. .+. +.+.+.+.+.+.+.-.-+.|.++-
T Consensus 221 -lR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~f~~ 299 (355)
T d1lc5a_ 221 -LRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLL 299 (355)
T ss_dssp -TCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEE
T ss_pred -ccccceeccchhhhHHHHhhcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcEECCCCCEEEE
Confidence 6889888875533 3221 10 00 011 123455566665543334455555
Q ss_pred EEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 744 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 744 iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+..+ +..+++.|.++||++++. .+.+|++.. +++|+++++++|+++|
T Consensus 300 ~~~~~~----------~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 300 LRCERE----------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVL 355 (355)
T ss_dssp EEESCT----------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred EECCCC----------HHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 555433 234788899999999872 268998764 6899999999988764
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.35 E-value=3.7e-12 Score=131.21 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=51.2
Q ss_pred ccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHH
Q 003466 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (818)
Q Consensus 411 ~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA 481 (818)
.|..=. ||+|++|+.++.....+. .+..+...++.+++++++|.+ .+.|+|+++|+|||..|+..+
T Consensus 7 d~~~g~-~P~v~eAl~~~~~~~~~~---y~~~~~~~~lr~~ia~~~g~~-~~~v~~tsggtean~~a~~~~ 72 (340)
T d1svva_ 7 DYSVGM-HPKILDLMARDNMTQHAG---YGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLA 72 (340)
T ss_dssp SCSSCC-CHHHHHHHHHHTTCCCCS---TTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHhhcCCCC---CCCCHHHHHHHHHHHHHhCCC-cceEEEcCCHHHHHHHHHHHH
Confidence 333325 999999999877654322 134677788999999999865 368999999999999999976
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=2.9e-11 Score=131.38 Aligned_cols=308 Identities=12% Similarity=0.065 Sum_probs=181.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC--CCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG--WASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~--~l~~v~f~~SGseA~e~ 476 (818)
..||+..|. . ++..++.|++|+++++++.. .+....+..+....+|+.+.+..+.. ..+.+++++++++|...
T Consensus 26 dvi~l~~g~--p--~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~ 101 (388)
T d1gdea_ 26 DVISLGIGE--P--DFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 101 (388)
T ss_dssp TCEECCCCS--C--CSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CeEECCCCC--C--CCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHH
Confidence 677776542 2 34437889999999887621 22222344566777888776533211 12479999999999988
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
++... ...| ..|++.+-+|.+-...+ ...|...
T Consensus 102 ~~~~l-----~~~g----------------d~vlv~~P~y~~~~~~~-~~~g~~~------------------------- 134 (388)
T d1gdea_ 102 GLSAF-----LKDG----------------EEVLIPTPAFVSYAPAV-ILAGGKP------------------------- 134 (388)
T ss_dssp HHTTT-----CCTT----------------CEEEEEESCCTTHHHHH-HHHTCEE-------------------------
T ss_pred HHHHh-----cCCC----------------CEEEECCCCcHHHHHHH-HHcCCEE-------------------------
Confidence 87755 2222 36888888887643322 2222110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
+.+|-.. . ..|+ -| .+.+++.+. ......++..| ++-.|.+
T Consensus 135 -----~~~~~~~------------~---~~~~--~d--------~~~l~~~~~-------~~~~~i~~~~P--~NPtG~~ 175 (388)
T d1gdea_ 135 -----VEVPTYE------------E---DEFR--LN--------VDELKKYVT-------DKTRALIINSP--CNPTGAV 175 (388)
T ss_dssp -----EEEECCG------------G---GTTC--CC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCC
T ss_pred -----EEeeccc------------c---cCCC--CC--------HHHHHHhCc-------cCCeEEEECCC--cCCCCCc
Confidence 1111000 0 0000 00 245666553 22334555556 6777877
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCc----EEEeccccc-CCccccceeecchHHHhh
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDS 710 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD----ivtlgKgLg-gGy~PlsAvl~~~~i~~~ 710 (818)
. +.+.+++|.++|++||+++|.||++..|...+..+ ....+.-.+| +.+|||.++ .| +-+|.+++.+++.+.
T Consensus 176 ~-s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~ii~~~~~~~~ 253 (388)
T d1gdea_ 176 L-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIER 253 (388)
T ss_dssp C-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCcc-ccEEEEEeeccchhh
Confidence 6 89999999999999999999999997764443322 2222222333 338999998 67 699999999887765
Q ss_pred ccCChH----------------H---------HH----------HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCC
Q 003466 711 FVGDSK----------------L---------WD----------LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAG 754 (818)
Q Consensus 711 l~~~~~----------------~---------~~----------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~ 754 (818)
+..... . +. ..+.+.+..... ..+... |.++-+++....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~p~gg~fl~~~l~~~~---- 328 (388)
T d1gdea_ 254 MVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGL-PTVKPKGAFYIFPRIRDTG---- 328 (388)
T ss_dssp HHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCBTTEECCBCGGGT----
T ss_pred hhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccc-cccCCCceEEEEEECCCCC----
Confidence 432110 0 00 011222333322 222333 344444443211
Q ss_pred CchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 755 ~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+.+++++|+ ++||++.|+ .+.+|++.. .++++|++++++|.+++++.+
T Consensus 329 ---~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~--~~~e~l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 329 ---LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEEAMDRMERVLKERK 386 (388)
T ss_dssp ---CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHTT
T ss_pred ---CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhcC
Confidence 12456777765 679999873 256888764 578899999999999998754
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.33 E-value=4.7e-11 Score=130.37 Aligned_cols=307 Identities=11% Similarity=0.053 Sum_probs=185.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
.+||+..|. -++..+|.|++|++++++..- .+....+.-+....+++++.+..+.. ..+.+++++++++|...+
T Consensus 31 ~vi~l~~G~----p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 106 (388)
T d1j32a_ 31 DVCSFSAGE----PDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNL 106 (388)
T ss_dssp CCEECCCSS----CSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred CeEECCCCC----CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHH
Confidence 889987653 244436889999999887522 12222334456677788887654422 125799998889999999
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.. ...| ..|++.+-+|.+... .+...+..
T Consensus 107 ~~~~-----~~~g----------------d~Vlv~~P~y~~~~~-~~~~~~~~--------------------------- 137 (388)
T d1j32a_ 107 MLAM-----IEPG----------------DEVIIPAPFWVSYPE-MVKLAEGT--------------------------- 137 (388)
T ss_dssp HHHH-----CCTT----------------CEEEEESSCCTHHHH-HHHHTTCE---------------------------
T ss_pred HHHH-----hCCC----------------CEEEEcCCCcHHHHH-HHHHhcCe---------------------------
Confidence 8765 2222 368888888876331 11212111
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
.+.+|... +..|. .| .+.+++.+. +...+.++..| ++-.|.+.
T Consensus 138 ---~v~~~~~~---------------~~~~~--~d--------~~~l~~~~~-------~~~~~~~~~~P--~NPTG~~~ 180 (388)
T d1j32a_ 138 ---PVILPTTV---------------ETQFK--VS--------PEQIRQAIT-------PKTKLLVFNTP--SNPTGMVY 180 (388)
T ss_dssp ---EEEECCCG---------------GGTTC--CC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCCC
T ss_pred ---EEEEeccc---------------ccccC--CC--------HHHHHHhCC-------CCCeEEEECCC--CCCCCccc
Confidence 01111000 00000 00 245666553 23344566667 67788776
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCC-----c--EEEeccccc-CCccccceeecchHHHh
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP-----D--IACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P-----D--ivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+.+.+++|.++|++||+++|.||++..+...+..+..- ....| . +..+||.++ .| +.+|.+++++++++
T Consensus 181 -~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~-~~~~~~~~~~~i~~~S~SK~~~~~G-lRvG~~~~~~~~~~ 257 (388)
T d1j32a_ 181 -TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSI-GAASPEAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVK 257 (388)
T ss_dssp -CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG-GGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHH
T ss_pred -chhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCH-HHhCcccccceeEecCChhhhhcch-hHeEEEEECHHHHH
Confidence 89999999999999999999999997664444322110 01111 1 347999997 67 79999999999887
Q ss_pred hccCChH------------------------------HHH---HHHHHHHHcCCCeeEEEeee-eEEEEEEecCcccCCC
Q 003466 710 SFVGDSK------------------------------LWD---LELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~~------------------------------~~~---~~l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~~~~~ 755 (818)
.+..... .+. +.+.+.+++++.+.-....| .++-+++....
T Consensus 258 ~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~~~----- 332 (388)
T d1j32a_ 258 AATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTG----- 332 (388)
T ss_dssp HHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGT-----
T ss_pred HHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECCCCC-----
Confidence 5432110 000 12334455555443333344 44333443211
Q ss_pred chHHHHHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 756 ~~~~a~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
....+++++|+ ++||.+.|+ .+.+|++.. .++++|++++++|+++++.+
T Consensus 333 --~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~--~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 333 --RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp --CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe--CCHHHHHHHHHHHHHHHHHh
Confidence 11345777765 679999984 367888864 57899999999999998764
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.29 E-value=5.3e-11 Score=130.02 Aligned_cols=296 Identities=11% Similarity=0.067 Sum_probs=172.4
Q ss_pred HHHHHHHHhhhhccc----ccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhccccccc
Q 003466 420 ELARDMGYTAARFGH----VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (818)
Q Consensus 420 ~V~eAi~~q~~~~~~----~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~ 494 (818)
.+.+|+.+.++.... +....+..+....+|+.+.+..+.+ ..+.+++++++++|+..+++.. ...|
T Consensus 48 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l-----~~~g---- 118 (403)
T d1wsta1 48 TIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVF-----LNPG---- 118 (403)
T ss_dssp HHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHH-----CCTT----
T ss_pred HHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHH-----hhcC----
Confidence 566666665543221 1112344566778888887755432 1368999999999999998865 1222
Q ss_pred ccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
..|+..+-+|.+..... ...|.. .+.+|...
T Consensus 119 ------------d~v~~~~P~y~~~~~~~-~~~g~~------------------------------~~~v~~~~------ 149 (403)
T d1wsta1 119 ------------DPIVVEAPTYLAAIQAF-KYYDPE------------------------------FISIPLDD------ 149 (403)
T ss_dssp ------------CEEEEEESCCHHHHHHH-HTTCCE------------------------------EEEEEEET------
T ss_pred ------------CccccCCCcchhhhHHH-hhcccc------------------------------ceeEeecc------
Confidence 36788888887643222 111111 01111100
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
...+ .... ....+.... ........+++-. .++-.|.+. +.+.+++|.++|++||
T Consensus 150 ----~~~~----------~~~~----~~~~~~~~~-----~~~~~~~~~~~~~-p~NPtG~~~-s~~~l~~i~~~a~~~~ 204 (403)
T d1wsta1 150 ----KGMR----------VDLL----EEKLEELRK-----QGKRVKIVYTVST-FQNPAGVTM-SVDRRKKLLELANEYD 204 (403)
T ss_dssp ----TEEC----------HHHH----HHHHHHHHH-----TTCCCCEEEECCS-SCTTTCCCC-CHHHHHHHHHHHHHTT
T ss_pred ----cCCc----------cccc----cccchhhhh-----ccccccccccccc-cCCCCCccC-CHHHHHHHHHHHHhcC
Confidence 0000 0011 122222332 1222333333333 267778766 7899999999999999
Q ss_pred CcEEEeecccCcccCCccch----hcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH--------------
Q 003466 655 IPVIFDEVFTGFWRLGVETT----ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-------------- 716 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a----~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-------------- 716 (818)
+++|.||++..|...|.... ...++..--+.++||.++.| +.+|.+++++++++.+.....
T Consensus 205 ~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G-~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 283 (403)
T d1wsta1 205 FLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPG-FRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIA 283 (403)
T ss_dssp CEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred ceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecCc-ccccccccchHHHHHHHHHHhhhccccccchhhhH
Confidence 99999999987755554322 11222222345899999878 799999999988875532110
Q ss_pred -------H----H---H-------HHHHHHHHcC-C-CeeEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCc
Q 003466 717 -------L----W---D-------LELIQQISSH-R-TVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV 772 (818)
Q Consensus 717 -------~----~---~-------~~l~~~l~~~-~-~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv 772 (818)
. + . +.+.+.+.++ + .+...... |+++-+++... ..+..+++.|.++||
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~--------~~~~~~~~~l~~~gV 355 (403)
T d1wsta1 284 WKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEG--------IDTKLMMERAVAKGV 355 (403)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCTT--------CCTTTTHHHHHHTTE
T ss_pred HhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECCCC--------CCHHHHHHHHHHCCE
Confidence 0 0 0 1122233322 2 23222223 55555666432 113357788999999
Q ss_pred eEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 773 YMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 773 lv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
++.|+ .+.+|++... .++++|++++++|.+++++.
T Consensus 356 ~v~pg~~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~~~ 399 (403)
T d1wsta1 356 AYVPGEAFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAETIKEE 399 (403)
T ss_dssp ECEEGGGGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHHH
Confidence 99873 2578988743 57899999999999998753
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.25 E-value=3.5e-11 Score=134.63 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T 664 (818)
+.|++.|.. ..++.++.+++|.. .+.+|..+++.+++++++++|++||++|++|+++.
T Consensus 161 ~~le~~I~~----~~~~~~~~i~~e~~-~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~ 218 (456)
T d1c7ga_ 161 NKLATLIKE----KGAENIAYICLAVT-VNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC 218 (456)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred HHHHHHhhh----cCCccceeEEeeec-ccccccceecHHHHHHHHHHHHHcCCEEEEEcchh
Confidence 567777764 34568899999986 67777778899999999999999999999999985
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=1.7e-09 Score=116.72 Aligned_cols=302 Identities=13% Similarity=0.058 Sum_probs=177.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
++||+..|.- .+. .++.|.+++++.+....+ +....+..+....+++.+....+.. ..+.++++++|++|...+
T Consensus 29 ~vI~l~~G~p--~~~--~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~ 104 (375)
T d1o4sa_ 29 DVINLTAGEP--DFP--TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA 104 (375)
T ss_dssp CCEECCCSSC--SSC--CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred CeEECCCcCC--CCC--CCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHH
Confidence 7888876532 233 278899999998765221 2223345667778888887644322 136899999999999888
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.. ...| ..|++.+-+|....... ...+...
T Consensus 105 ~~~l-----~~~g----------------d~vlv~~P~y~~~~~~~-~~~~~~~-------------------------- 136 (375)
T d1o4sa_ 105 FMAL-----LDPG----------------DEVIVFSPVWVSYIPQI-ILAGGTV-------------------------- 136 (375)
T ss_dssp HHHH-----CCTT----------------CEEEEEESCCTTHHHHH-HHTTCEE--------------------------
T ss_pred HHHH-----hCCC----------------CEEEEccCccccchhhh-hcccccc--------------------------
Confidence 8866 1222 36777777776532221 1111110
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
..+..+... ... .+ .+.++... .......++.-| ++-.|...
T Consensus 137 --~~~~~~~~~-----------~~~--------~~--------~~~~~~~~-------~~~~~~~~l~nP--~NPTG~~~ 178 (375)
T d1o4sa_ 137 --NVVETFMSK-----------NFQ--------PS--------LEEVEGLL-------VGKTKAVLINSP--NNPTGVVY 178 (375)
T ss_dssp --EEEECCGGG-----------TTC--------CC--------HHHHHHTC-------CTTEEEEEEESS--CTTTCCCC
T ss_pred --ccccccccc-----------ccc--------ch--------hHHHHHhh-------ccCccEEEEeCC--CCCccCCC
Confidence 000000000 000 00 12222222 223344666666 78888877
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccCC---CCcEEEeccccc-CCccccceeecchHHHhhcc
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGC---VPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv---~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~ 712 (818)
+.+.+++|.++|++|++.+|.||++.-+...+..... ...+. .--+.++||.++ .| +.+|.+++++++++.+.
T Consensus 179 -s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~~ 256 (375)
T d1o4sa_ 179 -RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVS 256 (375)
T ss_dssp -CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred -CHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCc-cccccccccccchhhhh
Confidence 7899999999999999999999998654332222211 11111 112448999998 78 79999999998877553
Q ss_pred CChH---------------------------H---HHHHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCCchHHHH
Q 003466 713 GDSK---------------------------L---WDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 713 ~~~~---------------------------~---~~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
.... . ..+.+.+.++..+. ..+... |.++-+++..+ ..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g~-~~~~p~gg~f~~~~~~~~----------~~ 325 (375)
T d1o4sa_ 257 KIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGV-KFVEPEGAFYLFFKVRGD----------DV 325 (375)
T ss_dssp HHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTC-CCCCCSBSSEEEEECSSC----------HH
T ss_pred hhhccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhcCc-eEecCCccEEEEEECCCC----------HH
Confidence 2111 0 01123344555542 223334 45555555432 33
Q ss_pred HHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 762 ~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+++.+|+ ++||++.|+ .+.+|++. ..++++|++++++|+++++
T Consensus 326 ~~~~~ll~~~gV~v~pG~~F~~~g~iRis~--~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 326 KFCERLLEEKKVALVPGSAFLKPGFVRLSF--ATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp HHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCEEEEEccccCCCCeEEEEE--cCCHHHHHHHHHHHHHHhc
Confidence 4555555 679999983 26788875 3578999999999988874
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=3.5e-10 Score=121.88 Aligned_cols=295 Identities=12% Similarity=0.077 Sum_probs=167.4
Q ss_pred eeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHH
Q 003466 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 480 (818)
Q Consensus 401 ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALkl 480 (818)
.||+..|. . ++.-+|.+++|+++.+++...+....+. .+|-+.++++++-. .+.++++++|++|+..+++.
T Consensus 27 ~I~ls~g~--p--~~~~p~~i~~al~~~l~~~~~Y~~~~G~----~elr~aiA~~~~~~-~~~Iiit~G~~~al~~~~~~ 97 (368)
T d1v2da_ 27 AVNLGQGF--P--SNPPPPFLLEAVRRALGRQDQYAPPAGL----PALREALAEEFAVE-PESVVVTSGATEALYVLLQS 97 (368)
T ss_dssp CEECCCCS--C--SSCCCHHHHHHHHHHTTTSCSCCCTTCC----HHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHHH
T ss_pred CEEecCCC--C--CCCCCHHHHHHHHHHhhcccCCCCCcCC----HHHHHHHHhhcccC-CcceeeccchHHHHHHHhhc
Confidence 46665432 1 2332689999999988764322212222 34555566655433 36899999999999999886
Q ss_pred HHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcce
Q 003466 481 AFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKW 560 (818)
Q Consensus 481 A~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~ 560 (818)
. ... ...|+..+-+|+........ .+.. ..
T Consensus 98 l-----~~~----------------~d~v~~~~p~~~~~~~~~~~-~g~~----------------------------~~ 127 (368)
T d1v2da_ 98 L-----VGP----------------GDEVVVLEPFFDVYLPDAFL-AGAK----------------------------AR 127 (368)
T ss_dssp H-----CCT----------------TCEEEEEESCCTTHHHHHHH-TTCE----------------------------EE
T ss_pred c-----ccc----------------cccccccCCcchhhhhHHHh-cCCc----------------------------cc
Confidence 6 111 13667777777654322221 1110 00
Q ss_pred eecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCH
Q 003466 561 ILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640 (818)
Q Consensus 561 ~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~ 640 (818)
.++++... +....| .+.+++.+. +.....++.-| ++..|.+. +.
T Consensus 128 ~~~~~~~~--------~~~~~d------------------~~~l~~~~~-------~~~~~i~~~~p--~NPtG~~~-~~ 171 (368)
T d1v2da_ 128 LVRLDLTP--------EGFRLD------------------LSALEKALT-------PRTRALLLNTP--MNPTGLVF-GE 171 (368)
T ss_dssp EEECEEET--------TEEECC------------------HHHHHTTCC-------TTEEEEEEESS--CTTTCCCC-CH
T ss_pred eecccccc--------ccccCC------------------HHHHHHhhc-------cCceEEEEcCC--CCcccccC-CH
Confidence 11111000 000011 134444443 23344556666 67888776 88
Q ss_pred HHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCC--cEEEecccccCCccccceeecchHHHhhccCChH--
Q 003466 641 LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP--DIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-- 716 (818)
Q Consensus 641 ~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P--DivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-- 716 (818)
+.+++|.++|++||+++|.||++..+.............-.. -+.++||..+..-+.+|.+++++++.+.+.....
T Consensus 172 ~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~ 251 (368)
T d1v2da_ 172 RELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWT 251 (368)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhhhhhcc
Confidence 899999999999999999999996443333322222111112 2457887666422789999999887765432110
Q ss_pred ------------------------------HHH---HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCCchHHHHH
Q 003466 717 ------------------------------LWD---LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 717 ------------------------------~~~---~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
.+. +.+.+.+++++. .-.... |.++-+.+... .
T Consensus 252 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~p~g~~~~~~~l~~~------------~ 318 (368)
T d1v2da_ 252 SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGL-RVYVPEGTYFLMAELPGW------------D 318 (368)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTC-CEECCSBSSEEEEECTTC------------C
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCc-EEecCCceeEEEEeCCcc------------H
Confidence 000 123344555543 233444 34444444322 1
Q ss_pred HHHHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
..+.|.++||++.|+ .+.+|++. ..++|+|++++++|.++|
T Consensus 319 ~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~--~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 319 AFRLVEEARVALIPASAFYLEDPPKDLFRFAF--CKTEEELHLALERLGRVV 368 (368)
T ss_dssp HHHHHHHTCEECEEGGGGCSSSCCTTEEEEEC--CSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCEEEEechhhCCCCCCCCEEEEEe--cCCHHHHHHHHHHHHHhC
Confidence 234567899999872 26788875 457899999999998764
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.1e-09 Score=117.66 Aligned_cols=293 Identities=12% Similarity=0.050 Sum_probs=165.4
Q ss_pred CHHHHHHHHHhhhhc--ccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhccccccc
Q 003466 418 QIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~ 494 (818)
.|.|.+|+++.++.- ++.. ..+ .+....+++++.+..+-+ ..+.++.++++++|+..++... .+.|
T Consensus 14 p~~i~eal~~~~~~~~~~Y~~-~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l-----~~~g---- 82 (361)
T d1d2fa_ 14 APCIIEALNQRLMHGVFGYSR-WKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW-----SETG---- 82 (361)
T ss_dssp CHHHHHHHHHHHTTCCCCCCC-SCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS-----SCTT----
T ss_pred CHHHHHHHHHHHhCCCCCCCC-CCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc-----cccc----
Confidence 799999999987642 2221 122 356667777777765532 1358999999999998887765 2222
Q ss_pred ccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
.+|++.+.+|.+.. ......+... +++|....
T Consensus 83 ------------d~Vlv~~P~y~~~~-~~~~~~g~~~------------------------------~~v~~~~~----- 114 (361)
T d1d2fa_ 83 ------------EGVVIHTPAYDAFY-KAIEGNQRTV------------------------------MPVALEKQ----- 114 (361)
T ss_dssp ------------CEEEEEESCCHHHH-HHHHHTTCEE------------------------------EEEECEEC-----
T ss_pred ------------cccccccccccchh-HHHHhhcceE------------------------------Eeeccccc-----
Confidence 26888888886532 2222222110 00000000
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
++..+.| .+.+++.+. ..+++++++-.- ++-.|... +.+.++++.++|++||
T Consensus 115 -~~~~~~d------------------~~~~~~~~~-------~~~~~~i~l~~p-~NPTG~~~-s~~~~~~i~~~~~~~~ 166 (361)
T d1d2fa_ 115 -ADGWFCD------------------MGKLEAVLA-------KPECKIMLLCSP-QNPTGKVW-TCDELEIMADLCERHG 166 (361)
T ss_dssp -SSSEECC------------------HHHHHHHHT-------STTEEEEEEESS-CTTTCCCC-CTTHHHHHHHHHHHTT
T ss_pred -ccccccc------------------cccchhhcc-------cCCceeEEeccc-cccccccc-chhhhhhhhhhhhhhh
Confidence 0000111 144555664 245666666553 77778665 7888999999999999
Q ss_pred CcEEEeecccCcccCCccchhcccCCCC-cE---EEeccccc-CCccccceeecc-hHHHh----hccCCh------H--
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVP-DI---ACYGKLLT-GGVIPLAATLAT-NAVFD----SFVGDS------K-- 716 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~P-Di---vtlgKgLg-gGy~PlsAvl~~-~~i~~----~l~~~~------~-- 716 (818)
+++|.||++..|-..+..... .....+ +. ..+||.++ .| +-+|.+... +...+ .+.... .
T Consensus 167 ~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~v~~~s~SK~~~~~g-~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (361)
T d1d2fa_ 167 VRVISDEIHMDMVWGEQPHIP-WSNVARGDWALLTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLA 244 (361)
T ss_dssp CEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEEEECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred eeeeecccccccccccccccc-ccccccccccccccccccccccc-ccceeeecchhHHHHHHhhhcccccccccchhhh
Confidence 999999999877433332221 112222 33 35688666 34 577766544 22211 111100 0
Q ss_pred --------------------HHHHH---HHHHH-HcCCCeeEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHhC-
Q 003466 717 --------------------LWDLE---LIQQI-SSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLRED- 770 (818)
Q Consensus 717 --------------------~~~~~---l~~~l-~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~- 770 (818)
.+.++ +.+.+ ...+.+.-.... |.++-+++.... ..+..++.+|+++
T Consensus 245 ~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~-------~~~~~~~~~Ll~~~ 317 (361)
T d1d2fa_ 245 LTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN-------IDDNALQKALIEQE 317 (361)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC-------CCHHHHHHHHHHTT
T ss_pred HHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCCC-------CCHHHHHHHHHHhC
Confidence 00000 11111 122222222223 445555654221 1255788888755
Q ss_pred CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 771 GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 771 Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
||++.|+ .+.+|++. ..+++++++++++|.++++++
T Consensus 318 gv~v~pG~~F~~~~~~~vRis~--~~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 318 KVAIMPGYTYGEEGRGFVRLNA--GCPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp CEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeccccCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHHhc
Confidence 9999872 25789875 357899999999999998875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=5.4e-10 Score=122.76 Aligned_cols=179 Identities=12% Similarity=0.168 Sum_probs=114.5
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc----EEEecccccCCc
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLLTGGV 695 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD----ivtlgKgLggGy 695 (818)
.+.+++-+ .++-.|.+. +.+.++++.++|++|++++|.||++..|...|.........-.|+ +..++|....|
T Consensus 184 ~~~~~~~~-p~NPtG~~~-s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G- 260 (420)
T d1vp4a_ 184 KFIYVVSN-FHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG- 260 (420)
T ss_dssp EEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-
T ss_pred ceeeEecC-CCCccchhh-hhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccccc-
Confidence 34444433 267777766 899999999999999999999999987754454322111101233 23678877778
Q ss_pred cccceeecchHHHhhccCChH----------------HHH-------------------HHHHHHHH----cCCCeeEEE
Q 003466 696 IPLAATLATNAVFDSFVGDSK----------------LWD-------------------LELIQQIS----SHRTVQRVV 736 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~~~~~----------------~~~-------------------~~l~~~l~----~~~~v~~vr 736 (818)
+-+|.+++++++++.+..... .+. +.+.+.++ ..+.+.-..
T Consensus 261 ~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~ 340 (420)
T d1vp4a_ 261 LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVK 340 (420)
T ss_dssp GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECC
T ss_pred cccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEec
Confidence 799999999999886642211 000 01112222 233443344
Q ss_pred eee-eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 737 ALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 737 g~G-l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
..| +++-+++.... .+..+++.|.++||++.|+ .+.+|++.. ..+++++++++++|.++++
T Consensus 341 p~gg~f~~~~~~~~~--------d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~l~ 411 (420)
T d1vp4a_ 341 SEGGLFIWLTLPEGF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVL 411 (420)
T ss_dssp CSBSSEEEEECCTTC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCC--------CHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHH
Confidence 444 44445553220 1234667889999999873 257888764 3678999999999999999
Q ss_pred HHHH
Q 003466 807 EFDK 810 (818)
Q Consensus 807 ~l~~ 810 (818)
+..+
T Consensus 412 ~~~~ 415 (420)
T d1vp4a_ 412 EYGK 415 (420)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 8864
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.13 E-value=5.4e-11 Score=129.04 Aligned_cols=186 Identities=12% Similarity=-0.022 Sum_probs=113.8
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
++.+.++..+.++++.... -...++.+...+.++....+.++.+++|++|+.+++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al---------------- 88 (366)
T d2aeua1 31 GFLIDEKDKALLNTYIGSS------YFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL---------------- 88 (366)
T ss_dssp CCCCCHHHHHHHTSTTHHH------HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH----------------
T ss_pred CCCccHHHHHHHHHhcCch------hhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHh----------------
Confidence 5666777777676654221 123455555555454322467899999999999999754
Q ss_pred CCccccccceEEEEE-cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 498 KDTTEKCIELKVLAL-KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~-~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
.++..+|++ +...|.+...++.+.|...
T Consensus 89 ------~~~~~vi~~~~~~~~~~~~~~~~l~g~~~--------------------------------------------- 117 (366)
T d2aeua1 89 ------KPKKVIHYLPELPGHPSIERSCKIVNAKY--------------------------------------------- 117 (366)
T ss_dssp ------CCSEEEEECSSSSCCTHHHHHHHHTTCEE---------------------------------------------
T ss_pred ------CCCCEEEEecCCCcchhHHHHHHhcCCeE---------------------------------------------
Confidence 122355555 4667887777666654320
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
+.++|+ +.+++.+ .++..+|+++......++ +..-+++|.++|++||++
T Consensus 118 -v~~~d~------------------e~l~~~i--------~~~tk~i~~~~p~n~~~~----~~~~l~~i~~ia~~~~~~ 166 (366)
T d2aeua1 118 -FESDKV------------------GEILNKI--------DKDTLVIITGSTMDLKVI----ELENFKKVINTAKNKEAI 166 (366)
T ss_dssp -EEESCH------------------HHHHTTC--------CTTEEEEEECBCTTSCBC----CHHHHHHHHHHHHHHTCC
T ss_pred -ECCCCH------------------HHHHHhc--------CCCceEEEEEecCCCCcC----CHHHHHHHHHHhccCcEE
Confidence 002332 4455444 346778888753133222 445699999999999999
Q ss_pred EEEeecccCcccCCccc--hhcccCCCCcEE--EecccccCCccccceeecchHHHhhcc
Q 003466 657 VIFDEVFTGFWRLGVET--TADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 657 LI~DEV~TGfGRtG~~~--a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~ 712 (818)
+|+||++. .+..+..+ ....+| .|++ +++|++|| .-+|.+++++++++.+.
T Consensus 167 ~i~De~y~-~~~~~~~~~~~~~~~~--~di~~~S~sK~~~g--~~~G~i~~~~~~i~~~~ 221 (366)
T d2aeua1 167 VFVDDASG-ARVRLLFNQPPALKLG--ADLVVTSTDKLMEG--PRGGLLAGKKELVDKIY 221 (366)
T ss_dssp EEEECTTH-HHHHHHTTCCCHHHHT--CSEEEEETTSSSSS--CSCEEEEEEHHHHHHHH
T ss_pred EEEecCcc-ccccccccCCCHhhcC--ceEEEecccccccc--cceeEEEecHHHHHHHH
Confidence 99999984 32222111 112334 4666 56677765 35688999999988664
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=8.4e-09 Score=111.63 Aligned_cols=305 Identities=12% Similarity=0.090 Sum_probs=178.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~AL 478 (818)
.+||+..|.- . +..++.+.+|+.+.......+....+..+....+++.+.+..+.. ..+.++.+++++++...++
T Consensus 29 ~vi~l~~G~p--~--~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~ 104 (389)
T d2gb3a1 29 RIHHLNIGQP--D--LKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSF 104 (389)
T ss_dssp EEEECSSCCC--C--SCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CEEECCCCCC--C--CCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccc
Confidence 7788765422 2 322677889998766543333333445667788888888765432 1358999999999988888
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
+.. ...| ..|+..+-+|....... ...|..
T Consensus 105 ~~l-----~~~g----------------d~V~i~~P~y~~~~~~~-~~~g~~---------------------------- 134 (389)
T d2gb3a1 105 AVI-----ANPG----------------DEILVLEPFYANYNAFA-KIAGVK---------------------------- 134 (389)
T ss_dssp HHH-----CCTT----------------CEEEEEESCCTHHHHHH-HHHTCE----------------------------
T ss_pred ccc-----ccCC----------------CeEEEeCCCCccccccc-cccCcc----------------------------
Confidence 866 1222 36777777776532221 111111
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
.+..|.... . +.+. + +.+. . ...+++.++++-. .++-.|...
T Consensus 135 --~~~~~~~~~-------~--~~~~--------~---------~~~~---~-----~~~~~~~~~~l~n-P~NPtG~~~- 176 (389)
T d2gb3a1 135 --LIPVTRRME-------E--GFAI--------P---------QNLE---S-----FINERTKGIVLSN-PCNPTGVVY- 176 (389)
T ss_dssp --EEEEECCGG-------G--TSCC--------C---------TTGG---G-----GCCTTEEEEEEES-SCTTTCCCC-
T ss_pred --ccccccccc-------c--ccch--------h---------hhhh---h-----hcccCccEEEeCC-CCccccccc-
Confidence 011110000 0 0000 0 0011 1 1234555555543 278888877
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC-CccccceeecchH-HHhhccCC
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIPLAATLATNA-VFDSFVGD 714 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg-Gy~PlsAvl~~~~-i~~~l~~~ 714 (818)
+.+.+++|.++|++||+++|.||++..+...+.........-...++ .++|.++. | +.+|.++++.+ +...+...
T Consensus 177 s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~G-lRiG~~~~~~~~i~~~~~~~ 255 (389)
T d2gb3a1 177 GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACG-ARVGCLITRNEELISHAMKL 255 (389)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHHH
T ss_pred hHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcc-cceeeeeccchhHHHHHhhh
Confidence 89999999999999999999999998776655543322222222233 56788774 5 79998888654 33322111
Q ss_pred hH--------------------------------HHHHHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHH
Q 003466 715 SK--------------------------------LWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 715 ~~--------------------------------~~~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
.. ...+.+.+.|++++.+..+. ..|.++-+++... .+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~---------~~~ 326 (389)
T d2gb3a1 256 AQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVE---------DAE 326 (389)
T ss_dssp HHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSS---------CHH
T ss_pred hhccccccccccccccccccccchhcccccccccccchhhhhhhhhhccccccCCCceEEEEEeCCCC---------CHH
Confidence 00 00112445566676543333 3355555555322 245
Q ss_pred HHHHHHHhC------CceEeec----------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLRED------GVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 762 ~~~~~l~e~------Gvlv~p~----------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.++++|+++ ||.+.|+ .+.+|++. ..+++++++++++|.++|+++
T Consensus 327 ~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~--~~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 327 EFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIAC--VLEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp HHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHHHh
Confidence 677777653 6666652 25688875 468899999999999999875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=3e-09 Score=115.39 Aligned_cols=206 Identities=14% Similarity=0.030 Sum_probs=121.6
Q ss_pred eeecccccccccCCCCCCHHHHHHHHHhhhhccc-ccCCCCCCh-------hHHHHHHHHHhccCCCCCCcEEEeCChhH
Q 003466 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYE-------PALECAELLLQGVGKGWASRAYFSDNGST 472 (818)
Q Consensus 401 ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~-~~~~~~~~~-------~~~eLae~L~~~~~~~~l~~v~f~~SGse 472 (818)
|+|-.+ .|-- +|.|++|+.+.+.+... ....+..+. ...++-+++++++|.. .+.|.|++++++
T Consensus 5 YlD~aa------~~p~-~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~-~~~I~~~~~~t~ 76 (391)
T d1p3wa_ 5 YLDYSA------TTPV-DPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGATE 76 (391)
T ss_dssp ECBTTT------CCCC-CHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHHH
T ss_pred EeeCcc------ccCC-CHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCC-CCcEEEECCHHH
Confidence 777654 3566 99999999998764322 111122332 2334456777888754 468999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc---cCCCCCCCcCCCCcccCCCcccC
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~---tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
|+..++..+ .......| ..||+.+..|++ ....... .|...
T Consensus 77 ~l~~~~~~~-~~~~~~~g----------------d~Vv~~~~~~~s-~~~~~~~~~~~G~~v------------------ 120 (391)
T d1p3wa_ 77 SDNLAIKGA-ANFYQKKG----------------KHIITSKTEHKA-VLDTCRQLEREGFEV------------------ 120 (391)
T ss_dssp HHHHHHHHH-HHHHGGGC----------------CEEEEETTSCHH-HHHHHHHHHHTTCEE------------------
T ss_pred HHHHHHhhh-hhhhcCCC----------------CEEEEeccccch-HHHHHHHHHHcCCEE------------------
Confidence 999888866 32222222 256666666654 3222211 11110
Q ss_pred CCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003466 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~ 629 (818)
..++..... .-| .+.+++.+. +++++|++.-+
T Consensus 121 ----------~~v~~~~~~-----------~~d------------------~~~~~~~i~--------~~T~lv~is~~- 152 (391)
T d1p3wa_ 121 ----------TYLAPQRNG-----------IID------------------LKELEAAMR--------DDTILVSIMHV- 152 (391)
T ss_dssp ----------EEECCCTTS-----------CCC------------------HHHHHHHCC--------TTEEEEECCSB-
T ss_pred ----------EEeCCCCCC-----------eEc------------------HHHHHHhCC--------CCcEEEEEECC-
Confidence 011100000 001 144555553 57889999987
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAV 707 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i 707 (818)
+...|.+.+ +++|.++|++||+++++|.+|+ +|..- . +.-...+|+++ .-|.+|+ .-+|.+.++++.
T Consensus 153 ~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~~--~--d~~~~~~D~~~~s~~k~~g~--~g~g~~~~~~~~ 221 (391)
T d1p3wa_ 153 NNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKLP--I--DLSQLKVDLMSFSGHKIYGP--KGIGALYVRRKP 221 (391)
T ss_dssp CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTBC--C--CTTTSCCSEEEEESTTTTSC--SSCEEEEECBTT
T ss_pred CCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCcc--c--cchhccccccccccccccCC--CceEEEEEecch
Confidence 888999887 8999999999999999999994 43211 1 11223467664 4555432 125666777665
Q ss_pred Hh
Q 003466 708 FD 709 (818)
Q Consensus 708 ~~ 709 (818)
..
T Consensus 222 ~~ 223 (391)
T d1p3wa_ 222 RV 223 (391)
T ss_dssp BC
T ss_pred hc
Confidence 44
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.08 E-value=2.7e-09 Score=116.16 Aligned_cols=309 Identities=10% Similarity=0.011 Sum_probs=171.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~AL 478 (818)
.+||+..|.- .+..+|+|++|++++++...+ .+..+..+....+++.+.+..+-. ..+.++.++++++|+..++
T Consensus 32 ~vi~l~~g~p----df~~p~~v~~al~~~~~~~~~-~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~ 106 (394)
T d1c7na_ 32 EVVPLSVADM----EFKNPPELIEGLKKYLDETVL-GYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAV 106 (394)
T ss_dssp TCCCCCSSSC----SSCCCHHHHHHHHHHHHHCCC-SSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHH
T ss_pred CeEEccCCCC----CCCCCHHHHHHHHHHHhCCCc-CCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhh
Confidence 6777754432 233368999999998876221 112233455666666666544321 1358999999999999998
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
+.. .+.| ..|+.....|.+.........+ .
T Consensus 107 ~~~-----~~pg----------------d~vi~~~p~~~~~~~~~~~~g~-~---------------------------- 136 (394)
T d1c7na_ 107 REF-----TKPG----------------DGVIIITPVYYPFFMAIKNQER-K---------------------------- 136 (394)
T ss_dssp HHH-----CCTT----------------CEEEECSSCCTHHHHHHHTTTC-E----------------------------
T ss_pred ccc-----cccc----------------cccccccCcccchhhHHhhhhh-c----------------------------
Confidence 876 2222 3677777777653322211111 0
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
.+..|... .+. .+ ..+ .+.++..+. ..++.++++-.- ++-.|.+.
T Consensus 137 --~v~~~~~~-----------~~~---~~--~~d--------~~~~~~~~~-------~~~~~~i~l~~P-~NPTG~v~- 181 (394)
T d1c7na_ 137 --IIECELLE-----------KDG---YY--TID--------FQKLEKLSK-------DKNNKALLFCSP-HNPVGRVW- 181 (394)
T ss_dssp --EEECCCEE-----------ETT---EE--ECC--------HHHHHHHHT-------CTTEEEEEEESS-BTTTTBCC-
T ss_pred --cccccccc-----------ccc---cc--cch--------hhhhhhhhc-------cccceEEEeccc-ccccceec-
Confidence 01111000 000 00 001 123333332 234544444432 77888776
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-c--ccC---CCCcEEEeccccc-CCccccceeecc-hHHHhh
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-D--LLG---CVPDIACYGKLLT-GGVIPLAATLAT-NAVFDS 710 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e--~~g---v~PDivtlgKgLg-gGy~PlsAvl~~-~~i~~~ 710 (818)
+.+.+++|.++|++||+++|.||++..|-..+..... . ..+ ..--+..+||.++ .| +-+|.+++. +.+.+.
T Consensus 182 s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~R~g~~~~~~~~i~~~ 260 (394)
T d1c7na_ 182 KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRER 260 (394)
T ss_dssp CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHH
T ss_pred cHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccc-cccccccccChhhhhh
Confidence 8999999999999999999999999876323322111 1 111 1111235789876 45 577766665 445443
Q ss_pred ccCC-------h--H--------------HHHH-----------HHHHHHHc-CCCeeEEEeeeeE-EEEEEecCcccCC
Q 003466 711 FVGD-------S--K--------------LWDL-----------ELIQQISS-HRTVQRVVALGTL-CAIELQAAGCNAG 754 (818)
Q Consensus 711 l~~~-------~--~--------------~~~~-----------~l~~~l~~-~~~v~~vrg~Gl~-~~iel~~~~~~~~ 754 (818)
+... . . .+.+ .+.+.++. .+.+......|.+ +-+++....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~---- 336 (394)
T d1c7na_ 261 FTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK---- 336 (394)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC----
T ss_pred hhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCCC----
Confidence 3210 0 0 0000 11122222 2334333444444 334443211
Q ss_pred CchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.....+++.|+++ ||++.|+ .+.+|++. ..++|+|++++++|.++++++
T Consensus 337 ---~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~--~~~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 337 ---MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINL--AAPSSVIQESLERLNKALKDL 393 (394)
T ss_dssp ---CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEE--eCCHHHHHHHHHHHHHHHHhc
Confidence 1255688888766 9999872 25788875 357889999999999999876
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.08 E-value=7.2e-09 Score=113.26 Aligned_cols=316 Identities=12% Similarity=0.048 Sum_probs=175.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-------CCCcEEEeCCh
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-------WASRAYFSDNG 470 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-------~l~~v~f~~SG 470 (818)
.+||+..|.-.........+.+++++++.++.... +....+..+....+|+.+.+..+.. ..+.++.++++
T Consensus 31 ~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~ 110 (412)
T d1bw0a_ 31 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGG 110 (412)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHH
T ss_pred CcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEeccc
Confidence 66776554311111111146788888887764322 1112344566777888887643210 12589999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++|+..+++.. -..| ..|++.+-+|++.... +...|...
T Consensus 111 ~~al~~~~~~l-----~~~G----------------d~Vlv~~P~y~~~~~~-~~~~G~~~------------------- 149 (412)
T d1bw0a_ 111 SHGILMAITAI-----CDAG----------------DYALVPQPGFPHYETV-CKAYGIGM------------------- 149 (412)
T ss_dssp HHHHHHHHHHH-----CCTT----------------CEEEEEESCCTHHHHH-HHHTTCEE-------------------
T ss_pred ccchhhhhhhh-----hccc----------------cceeeeeccchhhhhh-hhccCccc-------------------
Confidence 99999998865 2223 3788899999864322 22222110
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
+.+|-.. -++ |. .+ .+.+++.+. ......++..| +
T Consensus 150 -----------~~v~~~~-----------~~~----~~--~~--------~~~l~~~~~-------~~~~~~~l~np--~ 184 (412)
T d1bw0a_ 150 -----------HFYNCRP-----------END----WE--AD--------LDEIRRLKD-------DKTKLLIVTNP--S 184 (412)
T ss_dssp -----------EEEEEEG-----------GGT----TE--EC--------HHHHHHHCC-------TTEEEEEEESS--C
T ss_pred -----------ccccccc-----------ccc----cc--hh--------hHHHHhhhh-------ccccccccccc--c
Confidence 1111000 000 00 00 133444332 23344555555 6
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh--cc---cCCCCcEE---Eeccccc-CCcccccee
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--DL---LGCVPDIA---CYGKLLT-GGVIPLAAT 701 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~--e~---~gv~PDiv---tlgKgLg-gGy~PlsAv 701 (818)
+-.|.+. +.+.+++|.++|++|++++|.||++..|...|..... .. +......+ .+||.++ .| +-+|.+
T Consensus 185 NPtG~~~-~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G-~RvG~~ 262 (412)
T d1bw0a_ 185 NPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG-WRLGWL 262 (412)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEE
T ss_pred ccccccc-hhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCC-CCcccc
Confidence 7777766 8999999999999999999999999888555542111 11 11111122 4799987 46 789888
Q ss_pred ecchHH------Hhhcc-------CChH----------------HH----------HHHHHHHHHcCCCeeEEEeeee-E
Q 003466 702 LATNAV------FDSFV-------GDSK----------------LW----------DLELIQQISSHRTVQRVVALGT-L 741 (818)
Q Consensus 702 l~~~~i------~~~l~-------~~~~----------------~~----------~~~l~~~l~~~~~v~~vrg~Gl-~ 741 (818)
++.+.. +.... .... .+ ++.+.+.+.+...+.-....|. +
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~ 342 (412)
T d1bw0a_ 263 LYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMY 342 (412)
T ss_dssp EEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTE
T ss_pred cccchhhcchhhhhhhccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCceecCCCCceE
Confidence 875322 11110 0000 00 0112334445445544444543 3
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHh-CCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+-+.+...... +.....+++++|++ +||++.|+ .+.+|++. ..+++++++++++|++.+++.
T Consensus 343 l~~~~~~~~~~---~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~--~~~~e~l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 343 LMSRIDLEKYR---DIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERIKAFCQRH 410 (412)
T ss_dssp EEEEECGGGBS---SCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCChhhcC---CCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEE--cCCHHHHHHHHHHHHHHHHhc
Confidence 33344322100 11124567777765 59999983 26788875 467899999999999888664
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=7.9e-10 Score=122.15 Aligned_cols=282 Identities=11% Similarity=-0.026 Sum_probs=161.8
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccc
Q 003466 444 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA 523 (818)
Q Consensus 444 ~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a 523 (818)
...++.+.+++++|.+.....+++++|+++...++.+++|++. ++ .+.|.....-|.+...+
T Consensus 95 le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~-----------------~~-~~~vi~~~~~H~s~~~a 156 (445)
T d3bc8a1 95 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKR-----------------PK-AKYIIWPRIDQKSCFKS 156 (445)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHC-----------------TT-CCEEEEECCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhC-----------------CC-CCEEEEcCcccHHHHHH
Confidence 3345667777777643235678888899877777776644331 11 24455577779988888
Q ss_pred ccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHH
Q 003466 524 MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSY 603 (818)
Q Consensus 524 ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~ 603 (818)
+...|..... ++ +.|..-. -.-| .+.
T Consensus 157 ~~~~g~~~~~--------------v~-------------~~~~~~~---------~~id------------------~~~ 182 (445)
T d3bc8a1 157 MVTAGFEPVV--------------IE-------------NVLEGDE---------LRTD------------------LKA 182 (445)
T ss_dssp HHHTTCEEEE--------------EC-------------CEEETTE---------EECC------------------HHH
T ss_pred HHHcCCeeEE--------------EE-------------eeccCcc---------cccC------------------HHH
Confidence 7776543100 00 0010000 0011 256
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC--c--cchhcccC
Q 003466 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--V--ETTADLLG 679 (818)
Q Consensus 604 Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG--~--~~a~e~~g 679 (818)
|++.|++ ...+++++|++... ....|.+.+ +++|.++|++||++||+|+++.++ -.+ + .++....
T Consensus 183 l~~~i~~----~~~~~~~~v~~~~~-~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~-~~~~~~~~~~~~~~~- 251 (445)
T d3bc8a1 183 VEAKIQE----LGPEHILCLHSTTA-CFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQ-SSKCMHLIQQGARVG- 251 (445)
T ss_dssp HHHHHHH----HCGGGEEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTT-CHHHHHHHHHHHHHS-
T ss_pred HHHHHHh----ccccCeEEEEEeCC-CCCCeeehh----HHHHHHHHHHhCCcEEEEccchhh-hhhccccchhccCcC-
Confidence 7777764 23456888888875 566787776 999999999999999999999543 111 0 1111211
Q ss_pred CCCcEEEe--cccccCCccccceeecc-hHHHhhcc----CC---hH----------------------------HHHHH
Q 003466 680 CVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSFV----GD---SK----------------------------LWDLE 721 (818)
Q Consensus 680 v~PDivtl--gKgLggGy~PlsAvl~~-~~i~~~l~----~~---~~----------------------------~~~~~ 721 (818)
..|++++ .|.+++++ ..|+++.+ +.+.+.+. .. .. ++.+.
T Consensus 252 -~vd~~~~s~hK~~~~p~-g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 329 (445)
T d3bc8a1 252 -RIDAFVQSLDKNFMVPV-GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQ 329 (445)
T ss_dssp -CCCEEEEEHHHHHSCCS-SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcceEEecCccccccCC-CCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence 3566654 58777653 44555554 34333221 11 00 01111
Q ss_pred HHHHHHcCCC-eeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee------------------------
Q 003466 722 LIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------------------------ 776 (818)
Q Consensus 722 l~~~l~~~~~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p------------------------ 776 (818)
+.+....++. +...........+.+..... ........+...|.+.||-...
T Consensus 330 L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~---~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~ 406 (445)
T d3bc8a1 330 LKKLAEAHNERLLQTPHNPISLAMTLKTIDG---HHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADN 406 (445)
T ss_dssp HHHHHHHTTCCBCCCTTCSSEEEEECTTTSS---SSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSC
T ss_pred HHHHHhhcCceeecCCCCCcceEEEeeeccc---cCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCcc
Confidence 2222222332 33344445555555543211 1112345677788888873210
Q ss_pred -cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhHH
Q 003466 777 -LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 813 (818)
Q Consensus 777 -~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~~ 813 (818)
..+.+++.++..+|+||||.++++|+++++++++.+.
T Consensus 407 ~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~~ 444 (445)
T d3bc8a1 407 YPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQT 444 (445)
T ss_dssp CSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1144888899999999999999999999999886543
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.04 E-value=1.5e-08 Score=110.25 Aligned_cols=314 Identities=10% Similarity=-0.005 Sum_probs=178.5
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCCh
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SG 470 (818)
+|+ ++||+..|.=+ ...+...+.|++|+.++++... ++....+..+....+++.+.+..+.. ..+.+++++++
T Consensus 28 ~G~----~vi~l~~G~P~-~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~ 102 (395)
T d1xi9a_ 28 KGI----KVIRLNIGDPV-KFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAV 102 (395)
T ss_dssp TTC----CCEECCCCCGG-GTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred CCC----CeEECCCCCCC-CCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhccccccccccccccccc
Confidence 566 88888765311 1244436789999999887532 12222344566777888887765432 13578999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
.++...+++.. ...| ..|++.+-+|+.....+ ...|..
T Consensus 103 ~~~~~~~~~~~-----~~~G----------------d~vlv~~P~y~~~~~~~-~~~g~~-------------------- 140 (395)
T d1xi9a_ 103 TEALQLIFGAL-----LDPG----------------DEILVPGPSYPPYTGLV-KFYGGK-------------------- 140 (395)
T ss_dssp HHHHHHHHHHH-----CCTT----------------CEEEEEESCCHHHHHHH-HHTTCE--------------------
T ss_pred chhhhhhhhhh-----cCCC----------------CEEEEcCCccccchhhh-hhcCCE--------------------
Confidence 99988887765 2222 36889999998643222 222211
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
.+.+|... -++ |. .+ .+.+++.+. ......++.-| +
T Consensus 141 ----------~v~v~~~~-----------~~~----~~--~d--------~~~~~~~~~-------~~~~~v~l~~P--~ 176 (395)
T d1xi9a_ 141 ----------PVEYRTIE-----------EED----WQ--PD--------IDDIRKKIT-------DRTKAIAVINP--N 176 (395)
T ss_dssp ----------EEEEEEEG-----------GGT----SE--EC--------HHHHHHHCC-------TTEEEEEEESS--C
T ss_pred ----------EEEEeccc-----------ccc----cc--ch--------HHHHHHhhc-------ccccEEEecCC--C
Confidence 11111100 000 00 00 134444443 23334556666 6
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccccceeecc--
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLAT-- 704 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~PlsAvl~~-- 704 (818)
+-.|.+. +.+.+++|.++|++||+++|.||++..+-.-++........-...++ +|||.++ .| +-+|.+++.
T Consensus 177 NPTG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRvG~~~~~~~ 254 (395)
T d1xi9a_ 177 NPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATG-WRLGYMYFVDP 254 (395)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGG-GCCEEEEEECT
T ss_pred CCccchh-hHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccch-hhcEeeEecCH
Confidence 7788766 88999999999999999999999997653333322221111112222 7999887 46 688865532
Q ss_pred h----HHHhhc------c--CChH--------------H-------HH---HHHHHHHHcCCCeeEEEee-eeEEEEEEe
Q 003466 705 N----AVFDSF------V--GDSK--------------L-------WD---LELIQQISSHRTVQRVVAL-GTLCAIELQ 747 (818)
Q Consensus 705 ~----~i~~~l------~--~~~~--------------~-------~~---~~l~~~l~~~~~v~~vrg~-Gl~~~iel~ 747 (818)
+ .+.... . .... . +. +.+.+.|++.+.+...... |.++-+++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~ 334 (395)
T d1xi9a_ 255 ENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIE 334 (395)
T ss_dssp TCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEEC
T ss_pred HHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECC
Confidence 1 111111 0 0000 0 11 1234456666655434444 444445554
Q ss_pred cCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
... . ....+++..|+ ++||++.|+ .+.+|++. ..++|++++++++|.+++++
T Consensus 335 ~~~---~---~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~--~~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 335 VGP---W---KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVF--LPPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp SCS---C---SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEEC--CSCHHHHHHHHHHHHHHHHH
T ss_pred CCC---C---CCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHhc
Confidence 221 0 11234555555 679999873 25688875 45789999999999998865
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.00 E-value=1.9e-09 Score=118.74 Aligned_cols=182 Identities=14% Similarity=0.017 Sum_probs=105.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (818)
+.|++.|++. ...+.+++|++... ...+|.+.+ +++|.++|++||++||+|+++.++......+........
T Consensus 197 ~~l~~~i~~~---~~~~~~~~v~~~~~-~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~ 268 (434)
T d2z67a1 197 EDIENAIKKE---IELGNRPCVLSTLT-FFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYR 268 (434)
T ss_dssp HHHHHHHHHH---HHTTCCEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhh---hhcCCceEEEeccC-cCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCC
Confidence 5566666531 12346778888775 566787765 999999999999999999999543211111111122345
Q ss_pred CcEEEec--ccccCCccccceeecc-hHHHhhccCCh-------H------------------HH------HHHHHHHHH
Q 003466 682 PDIACYG--KLLTGGVIPLAATLAT-NAVFDSFVGDS-------K------------------LW------DLELIQQIS 727 (818)
Q Consensus 682 PDivtlg--KgLggGy~PlsAvl~~-~~i~~~l~~~~-------~------------------~~------~~~l~~~l~ 727 (818)
.|+++++ |.++++ ...+++..+ +.+.+.+.... . .. .+.+.+.++
T Consensus 269 ~D~~~~s~hK~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~ 347 (434)
T d2z67a1 269 VDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLN 347 (434)
T ss_dssp CSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEcCccccccC-CCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 7888766 988765 345556554 44444432211 0 00 011122222
Q ss_pred c----CC-CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee----------------cCCEEEEECC
Q 003466 728 S----HR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----------------LGNVIYLMCG 786 (818)
Q Consensus 728 ~----~~-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----------------~g~~ir~~pp 786 (818)
+ .. .+.... ......+.+..+ ...+...|.++||.... ..+.+++..+
T Consensus 348 ~l~~~~g~~ll~~~-~~~~~~~~~~~~----------~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s 416 (434)
T d2z67a1 348 DLSKKTGGKFLDVE-SPIASCISVNSD----------PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAA 416 (434)
T ss_dssp HHHHHSSCCBCCCC-CSSEEEEECSSC----------HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECC
T ss_pred HhhhhcCceecCCC-CCceeeeecCCC----------HHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecC
Confidence 2 11 111111 111222222222 44577889999986531 1367899999
Q ss_pred CCChHHHHHHHHHHHHH
Q 003466 787 PCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 787 l~~t~edId~~~~~l~~ 803 (818)
..+|+||||+++++|++
T Consensus 417 ~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 417 IGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp TTCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999999875
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.00 E-value=1.4e-08 Score=111.90 Aligned_cols=183 Identities=14% Similarity=0.147 Sum_probs=111.4
Q ss_pred CcEEEE-EEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh--cc---cCC--C---Cc---
Q 003466 618 GCIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--DL---LGC--V---PD--- 683 (818)
Q Consensus 618 ~~iAAV-IvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~--e~---~gv--~---PD--- 683 (818)
.++.++ +.-| ++-.|... +.+-+++|.++|++||+++|.||++..+-..+..+.. +. ..+ . +|
T Consensus 188 ~~~~~i~~~nP--~NPtG~~~-s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi 264 (431)
T d1m7ya_ 188 LRVKGVLVTNP--SNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVH 264 (431)
T ss_dssp CCEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEE
T ss_pred CcceEEEecCc--cccccccc-cccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEE
Confidence 445554 4455 67777766 8899999999999999999999999766333332211 10 011 1 11
Q ss_pred -EEEeccccc-CCccccceeecchHHHhhccC-------C-hH-----------------HH-------H---HHHHHHH
Q 003466 684 -IACYGKLLT-GGVIPLAATLATNAVFDSFVG-------D-SK-----------------LW-------D---LELIQQI 726 (818)
Q Consensus 684 -ivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~-------~-~~-----------------~~-------~---~~l~~~l 726 (818)
+-++||.++ .| +-+|.+++++++...... . .. .+ . +.+.+.+
T Consensus 265 ~~~s~SK~~~~~G-~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 343 (431)
T d1m7ya_ 265 VVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGL 343 (431)
T ss_dssp EEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcccccCCC-CccceeccchhhhHHHHHHHhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 237999998 67 689999998766432211 0 00 00 0 1123334
Q ss_pred HcCCCeeEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHH
Q 003466 727 SSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQL 797 (818)
Q Consensus 727 ~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~ 797 (818)
++.+ +.-+... |+++-+++...- .........+++++|+ ++||++.|+ .+.+|++.. +.++++|+++
T Consensus 344 ~~~g-i~~~~p~gg~f~w~~l~~~~--~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~a 419 (431)
T d1m7ya_ 344 QKSG-ISCLNGNAGLFCWVDMRHLL--RSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA-NLPERTLDLA 419 (431)
T ss_dssp HTTT-CEECCCCSSSEEEEECGGGS--SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS-SSCHHHHHHH
T ss_pred hcCC-cEEecCCceeEEEEECcccc--ccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC-cCCHHHHHHH
Confidence 4433 3333444 555556664321 1111233556787776 569999983 256888753 3567899999
Q ss_pred HHHHHHHHHHH
Q 003466 798 LLKLYQRLEEF 808 (818)
Q Consensus 798 ~~~l~~~l~~l 808 (818)
+++|.+++++.
T Consensus 420 l~rL~~~l~~~ 430 (431)
T d1m7ya_ 420 MQRLKAFVGEY 430 (431)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998763
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.00 E-value=1.7e-08 Score=110.53 Aligned_cols=305 Identities=11% Similarity=0.039 Sum_probs=176.4
Q ss_pred CHHHHHHHHHhhhhccc----ccCCCCCChhHHHHHHHHHhccCCCC--CCcEEEeCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAARFGH----VMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~----~~~~~~~~~~~~eLae~L~~~~~~~~--l~~v~f~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
.+.|.+|++++++.... +....+..+....+|+++.+..+... .+.++.++++++|...+++.. -..|
T Consensus 41 p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l-----~~~g- 114 (418)
T d2r5ea1 41 PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH-----VDEG- 114 (418)
T ss_dssp CHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-----CCTT-
T ss_pred CHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhc-----cccc-
Confidence 57799999998865321 12223445667788999887654321 257999999999999999876 1222
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (818)
..|++.+-+|.+........++.. ..+++.....
T Consensus 115 ---------------d~vlv~~P~y~~~~~~~~~~g~~~-----------------------------~~v~~~~~~~-- 148 (418)
T d2r5ea1 115 ---------------DEVIIIEPFFDCYEPMVKAAGGIP-----------------------------RFIPLKPNKT-- 148 (418)
T ss_dssp ---------------CEEEEEESCCTTHHHHHHHTTCEE-----------------------------EEEECEESCC--
T ss_pred ---------------cceeccccccchhhHHHHHcCCeE-----------------------------EEEEeccccc--
Confidence 378888888887543322222110 0000000000
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~ 651 (818)
. ....+..+. .+ .+.+.... .....++++-+- ++-.|.+. +.+.+++|.++|+
T Consensus 149 -----~--~~~~~~~~~--~~--------~~~~~~~~--------~~~~~~~~i~~p-~NPtG~~~-s~e~~~~l~~~a~ 201 (418)
T d2r5ea1 149 -----G--GTISSADWV--LD--------NNELEALF--------NEKTKMIIINTP-HNPLGKVM-DRAELEVVANLCK 201 (418)
T ss_dssp -----S--SCEEGGGEE--CC--------HHHHHHHC--------CTTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHH
T ss_pred -----c--cchhhhhhh--hh--------HHHHhhhh--------hccccceecCCc-Cccccccc-cHHHHHHHhhhhh
Confidence 0 000000000 00 12232222 345666666553 77888777 8999999999999
Q ss_pred hcCCcEEEeecccCcccCCccc--hhcccCCCCc---EEEeccccc-CCccccceeecchHHHhhccCCh--------H-
Q 003466 652 NRKIPVIFDEVFTGFWRLGVET--TADLLGCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFVGDS--------K- 716 (818)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~--a~e~~gv~PD---ivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~--------~- 716 (818)
+||+++|.||++..|-..+... .....+..+- +..+||.++ .| +-+|.+++++++++.+.... .
T Consensus 202 ~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~i~~~~~~~~~~~~~~~~~ 280 (418)
T d2r5ea1 202 KWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATP 280 (418)
T ss_dssp HHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEESCHHHHHHHHHHHTTTTCSCCHH
T ss_pred cCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCC-cccccccccchhhhhhhhcccccccccccc
Confidence 9999999999997663333211 1122222222 237999997 77 79999999999876542100 0
Q ss_pred ---------------------HH----------HHHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccC----CCchHHH
Q 003466 717 ---------------------LW----------DLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNA----GYGSLYA 760 (818)
Q Consensus 717 ---------------------~~----------~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~----~~~~~~a 760 (818)
.+ ++.+.+.|++.+. .-.... |.++-+++..-.... .......
T Consensus 281 ~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~ 359 (418)
T d2r5ea1 281 IQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGM-NPTVPQGGYFMVADWSSLDSKVDLTQETDARKD 359 (418)
T ss_dssp HHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTC-EEEECSBSSEEEEECGGGSTTCCGGGCCCSSHH
T ss_pred hhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcCC-cccCCCceeEEEEEcccccccccchhcccccCH
Confidence 00 0123344555543 223344 455555664321111 1122345
Q ss_pred HHHHHHHH-hCCceEeec------------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 761 ~~~~~~l~-e~Gvlv~p~------------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
..|++.|+ +.||.+.|+ .+.+|++. ..++|+|++++++|++.+
T Consensus 360 ~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~--~~~~e~l~~a~~rl~~~l 415 (418)
T d2r5ea1 360 YRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCF--FKKDENLQKAAEILRKWK 415 (418)
T ss_dssp HHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEEC--CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEe--cCCHHHHHHHHHHHHHHH
Confidence 67888877 459999873 14688876 347899999999998765
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.97 E-value=1.4e-08 Score=110.05 Aligned_cols=298 Identities=15% Similarity=0.065 Sum_probs=169.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-cc--cc--CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GH--VM--FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~--~~--~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
-|||.. ..|.- +..|.+|+.+.+... .. .. ......+...++-++++++++.. .+.+.|++++|+++
T Consensus 29 iYLd~a------s~g~~-p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~-~~ei~~~~~~T~~~ 100 (404)
T d1qz9a_ 29 IYLDGN------SLGAR-PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINL 100 (404)
T ss_dssp EECCTT------TSCCC-BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHH
T ss_pred EEcCCc------ccccC-CHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCC-CCcEEEecCchHHH
Confidence 678865 46777 788999999887542 11 10 00112355667888899988765 46899999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
..++..+....-.+ .....+|..+..+|.......... ..... .+
T Consensus 101 ~~~~~~~~~~~~~~---------------~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~----------------~~--- 145 (404)
T d1qz9a_ 101 FKVLSAALRVQATR---------------SPERRVIVTETSNFPTDLYIAEGL-ADMLQ----------------QG--- 145 (404)
T ss_dssp HHHHHHHHHHHHHH---------------STTCCEEEEETTSCHHHHHHHHHH-HHHHC----------------SS---
T ss_pred HHHhhhhhhhhccc---------------CCCcEEEEeccccchHHHHHHhhh-heeee----------------ec---
Confidence 88877553222111 112245555555554321111100 00000 00
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
+..+ . ..+. +.+++.+ .+++..|++--+ +...|
T Consensus 146 -------~~~~-~------------~~~~------------------~~~~~~i--------~~~T~lV~i~~v-~~~tG 178 (404)
T d1qz9a_ 146 -------YTLR-L------------VDSP------------------EELPQAI--------DQDTAVVMLTHV-NYKTG 178 (404)
T ss_dssp -------CEEE-E------------ESSG------------------GGHHHHC--------STTEEEEEEESB-CTTTC
T ss_pred -------eecc-c------------cccc------------------hhHHHhc--------CCCceEEEEecc-ccccc
Confidence 0000 0 0000 2233444 356788888887 89999
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhcc
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~ 712 (818)
.+.| +++|.++|+++|+++++|=+|+ +|..- .......+|+++++ |-+.+|---.+.+..+++..+.+.
T Consensus 179 ~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~~----~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~ 249 (404)
T d1qz9a_ 179 YMHD----MQALTALSHECGALAIWDLAHS-AGAVP----VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 249 (404)
T ss_dssp BBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC----CCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSC
T ss_pred ceec----HHHHhccccccccceeEEeecc-ccccc----cccccccceEEEEechhhcccCCceEEEEEechhhhhhCC
Confidence 9998 9999999999999999999994 43221 11222356766554 765443111234445554433221
Q ss_pred CC----------------------hH----------------------------HHHH----------HHHHHHHcCCCe
Q 003466 713 GD----------------------SK----------------------------LWDL----------ELIQQISSHRTV 732 (818)
Q Consensus 713 ~~----------------------~~----------------------------~~~~----------~l~~~l~~~~~v 732 (818)
.. .. .+++ .+.+.+...+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 329 (404)
T d1qz9a_ 250 QPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 329 (404)
T ss_dssp CSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCE
Confidence 00 00 0000 111122222222
Q ss_pred eE-----EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEEC-CCCChHHHHHHHHHHHHHHH
Q 003466 733 QR-----VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMC-GPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 733 ~~-----vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~p-pl~~t~edId~~~~~l~~~l 805 (818)
.- ....|.++++.+. .+..+.+.|.++||++... ++.||++| ++-.|++|||+++++|+++|
T Consensus 330 ~i~~p~~~~~r~~~vsf~~~-----------~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl 398 (404)
T d1qz9a_ 330 TLVTPREHAKRGSHVSFEHP-----------EGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEIL 398 (404)
T ss_dssp EECSCSSGGGBCSEEEEECT-----------THHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCccceeeEEEEecC-----------CHHHHHHHHHHCCCEEeecCCCeEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 11 1122345555432 1456888999999987653 58999998 67789999999999999998
Q ss_pred HH
Q 003466 806 EE 807 (818)
Q Consensus 806 ~~ 807 (818)
++
T Consensus 399 ~~ 400 (404)
T d1qz9a_ 399 DR 400 (404)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=98.96 E-value=3.9e-09 Score=117.24 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+..+.+.|.++||.+-.. .+++||..+..+|++|||+++++|.+..+.++
T Consensus 410 ~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~ 460 (462)
T d1c4ka2 410 ATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 460 (462)
T ss_dssp HHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHh
Confidence 556778889999987543 47899999999999999999999988776654
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=7.7e-08 Score=104.98 Aligned_cols=301 Identities=10% Similarity=-0.021 Sum_probs=178.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCC-------hhHHHHHHHHHhccCCCCCCcEEEeCChhH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~-------~~~~eLae~L~~~~~~~~l~~v~f~~SGse 472 (818)
-|+|..+ .|-- .+.|.+++.+.+.... .+.....+ +...+.-+.++++++...-+.++|+++.++
T Consensus 24 iYld~a~------~~~~-p~~v~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~ 95 (405)
T d1jf9a_ 24 AYLDSAA------SAQK-PSQVIDAEAEFYRHGY-AAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTE 95 (405)
T ss_dssp EECCTTT------CCCC-CHHHHHHHHHHHHHTC-CCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred EEEeCcc------ccCC-CHHHHHHHHHHHHhcc-CCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHH
Confidence 4777544 4545 8899999998776531 11111222 233444567777776332368999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
|+..+++.. .....+. ...||+.+..||........+.... |.
T Consensus 96 ~~~~~~~~~-~~~~~~~----------------g~~il~~~~e~~s~~~~~~~~a~~~--------------g~------ 138 (405)
T d1jf9a_ 96 GINLVANSW-GNSNVRA----------------GDNIIISQMEHHANIVPWQMLCARV--------------GA------ 138 (405)
T ss_dssp HHHHHHHHH-HHHHCCT----------------TCEEEEETTCCGGGTHHHHHHHHHH--------------TC------
T ss_pred HHHHHHhcc-cccccCC----------------CCEEEEEeCcccchHHHHHHHHHHc--------------Cc------
Confidence 999888764 2222222 2478888888887554333322100 00
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
.+..++..... .-| .+.++..+ .++++.|.+.-+ ...
T Consensus 139 -----~v~~~~~~~~g-----------~~~------------------~~~~~~~i--------~~~t~lv~~~~v-~~~ 175 (405)
T d1jf9a_ 139 -----ELRVIPLNPDG-----------TLQ------------------LETLPTLF--------DEKTRLLAITHV-SNV 175 (405)
T ss_dssp -----EEEEECBCTTS-----------CBC------------------GGGHHHHC--------CTTEEEEEEESB-CTT
T ss_pred -----EEEEECCCCCC-----------cCC------------------HHHHHHhc--------cCCcEEEEEecC-CCc
Confidence 00011100000 001 12333333 357889999987 888
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHHhh
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDS 710 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~ 710 (818)
.|.+.| ++++.++|+++|+++++|=+|+ .|.. ..-.+. ..+|+++ .-|-+| + -=+|++..+++..+.
T Consensus 176 tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~--~id~~~--~~~D~~~~s~hK~~G-p-~G~g~l~v~~~~~~~ 244 (405)
T d1jf9a_ 176 LGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH--PVDVQA--LDCDFYVFSGHKLYG-P-TGIGILYVKEALLQE 244 (405)
T ss_dssp TCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHH--HTCSEEEEEGGGTTS-C-SSCEEEEECHHHHTT
T ss_pred ccccCc----hHHhhhHHHHcCCeeeccccee-cccc--ccchhh--cCCceeecccccccc-C-CCceeeeechhhhcc
Confidence 899998 9999999999999999999994 3221 111222 3478775 457653 2 126777888887654
Q ss_pred ccC----------------------------ChH-------------H---------------HHHHHHHHHHcCCCee-
Q 003466 711 FVG----------------------------DSK-------------L---------------WDLELIQQISSHRTVQ- 733 (818)
Q Consensus 711 l~~----------------------------~~~-------------~---------------~~~~l~~~l~~~~~v~- 733 (818)
+.. +.. + +.+.+.+.++..+.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~ 324 (405)
T d1jf9a_ 245 MPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTL 324 (405)
T ss_dssp CCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred cCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccc
Confidence 321 000 0 0011223334444432
Q ss_pred -EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHHHHHHH
Q 003466 734 -RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 734 -~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~~ 799 (818)
....++.++.+.+... .+..+...|-++||.++.+ .+.+|+++....|++|||++++
T Consensus 325 ~~~~~r~~ivsf~~~~~---------~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~ 395 (405)
T d1jf9a_ 325 YGPQNRLGVIAFNLGKH---------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVT 395 (405)
T ss_dssp ESCTTCCSEEEEEETTC---------CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHH
T ss_pred cCCcCcCcEEEEEcCCC---------CHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence 1122345666666432 1445677788999998742 2679999999999999999999
Q ss_pred HHHHHHHHH
Q 003466 800 KLYQRLEEF 808 (818)
Q Consensus 800 ~l~~~l~~l 808 (818)
+|+++++-+
T Consensus 396 ~l~~i~r~~ 404 (405)
T d1jf9a_ 396 GLQRIHRLL 404 (405)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 998887643
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2e-09 Score=116.24 Aligned_cols=170 Identities=15% Similarity=0.104 Sum_probs=101.0
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccc
Q 003466 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLA 699 (818)
Q Consensus 622 AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~Pls 699 (818)
.|.+--+ .+..|.+.| ++++.++|++||+++++|.+|+ +|.. ..-.+ ....|+++++ |.++|- .-++
T Consensus 147 ~v~~~~~-~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs-~g~~--~~d~~--~~~~D~~~~s~~K~~~gp-~g~~ 215 (388)
T d1h0ca_ 147 LLFLTHG-ESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS-LGGT--PLYMD--RQGIDILYSGSQKALNAP-PGTS 215 (388)
T ss_dssp EEEEESE-ETTTTEECC----CTTHHHHHHTTTCEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC-TTCE
T ss_pred eEEEeee-eeccccccC----HHHHHHHhhcccccceeccccc-cccc--ccccc--ccccceecccccccccCC-CceE
Confidence 4444443 566788887 8999999999999999999995 3221 11122 3345777665 777652 1234
Q ss_pred eeecchHHHhhccCCh-----------------------------H-------------HH---------------HHHH
Q 003466 700 ATLATNAVFDSFVGDS-----------------------------K-------------LW---------------DLEL 722 (818)
Q Consensus 700 Avl~~~~i~~~l~~~~-----------------------------~-------------~~---------------~~~l 722 (818)
.+..+++..+.+.... . .+ ...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l 295 (388)
T d1h0ca_ 216 LISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYL 295 (388)
T ss_dssp EEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHH
Confidence 5566666554332110 0 00 0011
Q ss_pred HHHHHcCCC---eeEE-EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEee-----cCCEEEEE-CCCCChH
Q 003466 723 IQQISSHRT---VQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRP-----LGNVIYLM-CGPCSSP 791 (818)
Q Consensus 723 ~~~l~~~~~---v~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p-----~g~~ir~~-ppl~~t~ 791 (818)
.+.+...+. +.+- .....+..+.+.+. ..+..+...|+++ ||.++. .+..+|+. .....|+
T Consensus 296 ~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~--------~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~ 367 (388)
T d1h0ca_ 296 HGRLQALGLQLFVKDPALRLPTVTTVAVPAG--------YDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATR 367 (388)
T ss_dssp HHHHHHHTCCBSSCSGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSH
T ss_pred HHHHhhcCcccccCCHHHcCCeEEEEECCCC--------CCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCH
Confidence 222222221 1110 11223455555322 2255677788765 998875 35789998 4567899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003466 792 EVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 792 edId~~~~~l~~~l~~l~~ 810 (818)
||||+++++|+++|+++.+
T Consensus 368 edid~li~aL~~~L~~l~k 386 (388)
T d1h0ca_ 368 ENVDRVTEALRAALQHCPK 386 (388)
T ss_dssp HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988753
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=98.93 E-value=3.8e-08 Score=108.18 Aligned_cols=183 Identities=11% Similarity=0.115 Sum_probs=109.9
Q ss_pred CCcEEE-EEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch--hccc------CCCCc----
Q 003466 617 SGCIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLL------GCVPD---- 683 (818)
Q Consensus 617 ~~~iAA-VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a--~e~~------gv~PD---- 683 (818)
..++.+ ++..| ++-.|.+. +.+.+++|.++|++||+++|.||++..+-..|..+. .+.. ...+|
T Consensus 186 ~~~~~~~~l~nP--~NPtG~~~-s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~ 262 (428)
T d1iaya_ 186 NIKVKGLILTNP--SNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp TCCEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred CCCceEEEEccC--CCcccccc-cccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEE
Confidence 345554 45555 67777766 788899999999999999999999986633343221 1111 11233
Q ss_pred EEEeccccc-CCccccceeec-chHHHhhccCC------hH------------------HHH----------HHHHHHHH
Q 003466 684 IACYGKLLT-GGVIPLAATLA-TNAVFDSFVGD------SK------------------LWD----------LELIQQIS 727 (818)
Q Consensus 684 ivtlgKgLg-gGy~PlsAvl~-~~~i~~~l~~~------~~------------------~~~----------~~l~~~l~ 727 (818)
+..+||.++ .| +-+|.+++ ++.+.+.+... .. .+. +.+.+.++
T Consensus 263 ~~s~SK~~~~~G-lRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~ 341 (428)
T d1iaya_ 263 VYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLE 341 (428)
T ss_dssp EEESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcccCCC-cccccccccccchhhhhhhhhcccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHH
Confidence 337999886 56 78998887 45555533211 00 000 11223344
Q ss_pred cCCCeeEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHH
Q 003466 728 SHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLL 798 (818)
Q Consensus 728 ~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~ 798 (818)
..+ +.-.... |+++-+++.... ..........+++.|++ .||++.|+ .+.+|++.. ..++++|++++
T Consensus 342 ~~g-i~~~~p~gg~f~w~~l~~~~--~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al 417 (428)
T d1iaya_ 342 VVG-IKCLKNNAGLFCWMDLRPLL--RESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIAL 417 (428)
T ss_dssp HTT-CCBCCCSSSSEEEEECGGGC--SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHH
T ss_pred hCC-CEEecCCcceEEEEECcccc--ccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHH
Confidence 333 2222233 556656664321 11112334567888874 69999873 267888763 46678899999
Q ss_pred HHHHHHHHH
Q 003466 799 LKLYQRLEE 807 (818)
Q Consensus 799 ~~l~~~l~~ 807 (818)
++|++++.+
T Consensus 418 ~Rl~~~l~~ 426 (428)
T d1iaya_ 418 ARIRRFVGV 426 (428)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999988753
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=3.3e-08 Score=108.28 Aligned_cols=320 Identities=12% Similarity=0.046 Sum_probs=176.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc---cccCCCCCChhHHHHHHHHHhccCCCCC--CcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HVMFPENVYEPALECAELLLQGVGKGWA--SRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~---~~~~~~~~~~~~~eLae~L~~~~~~~~l--~~v~f~~SGseA~ 474 (818)
.+||+..|.- .+...+.|.+|+++++.... .+....+..+....+++++.+..|.... +.|++++++++|.
T Consensus 26 dvI~l~~G~p----~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al 101 (418)
T d1w7la_ 26 DVVNLGQGFP----DFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 101 (418)
T ss_dssp CCEECCCCSC----SSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCEECCCCCC----CCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHH
Confidence 5777766531 23325668899998886421 1222234556777888888876654311 3588998889999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
..+++.. ...| ..|++.+..|+.....+...+ .......
T Consensus 102 ~~~~~~l-----~~~g----------------~~vlv~~p~~~~y~~~~~~~g-~~~v~~~------------------- 140 (418)
T d1w7la_ 102 FTAFQAL-----VDEG----------------DEVIIIEPFFDCYEPMTMMAG-GRPVFVS------------------- 140 (418)
T ss_dssp HHHHHHH-----CCTT----------------CEEEEEESCCTTHHHHHHHTT-CEEEEEE-------------------
T ss_pred HHHHHhh-----ccCC----------------ceeeccccccchhHHHHHHcC-CEeeccc-------------------
Confidence 9888766 1222 367888787776442222222 1100000
Q ss_pred ccCcceeecCcchhhhhccccccccccCc-cchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSR-DEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~-~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
..|..... .... +..|+ . +..+.... ..+...+.++..| ++-.
T Consensus 141 --------~~~~~~~~---------~~~~~~~~~~--~----------d~~~~~~~-----~~~~~~~i~~~~p--~NPt 184 (418)
T d1w7la_ 141 --------LKPGPIQN---------GELGSSSNWQ--L----------DPMELAGK-----FTSRTKALVLNTP--NNPL 184 (418)
T ss_dssp --------CEECC------------CCSEEGGGEE--C----------CHHHHHHH-----CCTTEEEEEEESS--CTTT
T ss_pred --------cccccccc---------cccccccCcc--c----------chhhhhcc-----ccccccceeccCc--CCcc
Confidence 00000000 0000 00000 0 11111111 2233333444444 6777
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hh-cccCCCCc---EEEeccccc-CCccccceeecchHH
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DLLGCVPD---IACYGKLLT-GGVIPLAATLATNAV 707 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~-e~~gv~PD---ivtlgKgLg-gGy~PlsAvl~~~~i 707 (818)
|.+. +.+.+++|.++|++|++++|.||++..|...|.-. .. +..+..+. +..+||.++ .| +.+|.+++++++
T Consensus 185 G~~~-s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG-~RvG~~v~~~~~ 262 (418)
T d1w7la_ 185 GKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHI 262 (418)
T ss_dssp CCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEECCHHH
T ss_pred cccc-cHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCC-Ccccccccchhh
Confidence 7766 88999999999999999999999998875555421 11 21122222 347999887 57 799999999988
Q ss_pred HhhccCCh--------H--------HH-----------------H-------HHHHHHHHcCCCeeEEEee-eeEEEEEE
Q 003466 708 FDSFVGDS--------K--------LW-----------------D-------LELIQQISSHRTVQRVVAL-GTLCAIEL 746 (818)
Q Consensus 708 ~~~l~~~~--------~--------~~-----------------~-------~~l~~~l~~~~~v~~vrg~-Gl~~~iel 746 (818)
++.+.... . .+ . +.+.+.+.+.+. .-.... |.++-+++
T Consensus 263 ~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~~P~gg~f~~~~~ 341 (418)
T d1w7la_ 263 MKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL-KPLIPQGSYFLITDI 341 (418)
T ss_dssp HHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTC-EEEECSBSSEEEEEC
T ss_pred hhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCC-cccCCCceeEEEEEC
Confidence 76542210 0 00 0 112334455443 333333 44455555
Q ss_pred ecCcc-----cCCCchHHHHHHHHHHH-hCCceEeec------------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 747 QAAGC-----NAGYGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 747 ~~~~~-----~~~~~~~~a~~~~~~l~-e~Gvlv~p~------------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
..... ....+......++++|+ ++||.+.|+ .+.+|++. ..+++++++++++|++..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~--~~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 342 SDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCF--VKDEATLQAMDEKLRKWK 416 (418)
T ss_dssp HHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEEC--CCCHHHHHHHHHHHHHHH
T ss_pred cccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEE--cCCHHHHHHHHHHHHHHh
Confidence 32100 00112223456777765 679999873 15788874 458889999999987653
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=98.89 E-value=2.2e-07 Score=101.34 Aligned_cols=300 Identities=10% Similarity=0.026 Sum_probs=175.4
Q ss_pred eeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCC-------hhHHHHHHHHHhccCCCCCCcEEEeCChhHH
Q 003466 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (818)
Q Consensus 401 ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~-------~~~~eLae~L~~~~~~~~l~~v~f~~SGseA 473 (818)
|||-.+ .|-- .+.|.+++.+.++.... +..+..+ +..++.-+.++++++...-+.++|+++++++
T Consensus 25 Yld~a~------~~~~-p~~v~~~~~~~~~~~~~-n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~ 96 (408)
T d1t3ia_ 25 YLDNAA------TSQK-PRAVLEKLMHYYENDNA-NVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEA 96 (408)
T ss_dssp ECBTTT------CCCC-CHHHHHHHHHHHHHTCC-CC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred EeeCcc------ccCC-CHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHH
Confidence 777554 4545 78899999988776421 1111222 2333445677777775323568899999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
+..++... ....-+.| ..|+..+..|++............ |..
T Consensus 97 ~n~~~~~~-~~~~~~~g----------------~~il~s~~e~~s~~~~~~~~~~~~--------------g~~------ 139 (408)
T d1t3ia_ 97 INLVAYSW-GMNNLKAG----------------DEIITTVMEHHSNLVPWQMVAAKT--------------GAV------ 139 (408)
T ss_dssp HHHHHHHT-HHHHCCTT----------------CEEEEETTCCGGGTHHHHHHHHHH--------------CCE------
T ss_pred HHHHHhhc-cccccCCC----------------CEEEeecccchhhhhhhhhhhhcc--------------Cce------
Confidence 88877654 22222222 367777776665432221111000 000
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
...++.+.. .. . . .+.+++.+ ..+++.|.+--+ +...
T Consensus 140 -----v~~~~~~~~------------~~---------~---~-----~~~l~~~~--------~~~t~lv~i~~~-~~~t 176 (408)
T d1t3ia_ 140 -----LKFVQLDEQ------------ES---------F---D-----LEHFKTLL--------SEKTKLVTVVHI-SNTL 176 (408)
T ss_dssp -----EEEECBCTT------------SS---------B---C-----HHHHHHHC--------CTTEEEEEEESB-CTTT
T ss_pred -----Eeeeecccc------------cc---------c---c-----HHHhhhcc--------CCCceEEEEecc-cccc
Confidence 001111100 00 0 0 14455544 357888999887 8899
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhc
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l 711 (818)
|.+.| ++++.++|+++|+++++|=+|+ +|..= .-...+ .+|+++++ |- .|+ --+|++..++++....
T Consensus 177 G~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~~--id~~~~--~~D~~~~s~hK~-~gp-~G~g~l~v~~~~~~~~ 245 (408)
T d1t3ia_ 177 GCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLI--DCDWLVASGHKM-CAP-TGIGFLYGKEEILEAM 245 (408)
T ss_dssp CBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEEEGGGT-TSC-TTCEEEEECHHHHHHS
T ss_pred cccCc----HHHHhhhhhccCceeeecccee-ccccc--cccccc--CCceEEeccccc-cCC-CCccccccchhhhhcC
Confidence 99998 8999999999999999998883 43221 112222 46888655 65 333 2367788888876432
Q ss_pred c---------------------------CChH----------------------------HHHHHHHHHHHcCCCeeEE-
Q 003466 712 V---------------------------GDSK----------------------------LWDLELIQQISSHRTVQRV- 735 (818)
Q Consensus 712 ~---------------------------~~~~----------------------------~~~~~l~~~l~~~~~v~~v- 735 (818)
. .+.. .+.+.+.+.+...+.+.-+
T Consensus 246 ~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~ 325 (408)
T d1t3ia_ 246 PPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYG 325 (408)
T ss_dssp CCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEES
T ss_pred CceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccC
Confidence 1 1100 0111223344555544221
Q ss_pred -----EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHHHHH
Q 003466 736 -----VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQL 797 (818)
Q Consensus 736 -----rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~ 797 (818)
...+.++.+.+... .+..+...|-++||.++.+ .+.+|+++....|++|||++
T Consensus 326 ~~~~~~~~~~iv~f~~~~~---------~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~l 396 (408)
T d1t3ia_ 326 PNPKHGDRAALASFNVAGL---------HASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLF 396 (408)
T ss_dssp CCGGGSCBCSEEEEEETTB---------CHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHH
T ss_pred CCccccCcceEEEEEeCCC---------CHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHH
Confidence 11244555655432 1456777888999988631 35799999999999999999
Q ss_pred HHHHHHHHHHH
Q 003466 798 LLKLYQRLEEF 808 (818)
Q Consensus 798 ~~~l~~~l~~l 808 (818)
+++|+++++.+
T Consensus 397 i~~L~~~~~~f 407 (408)
T d1t3ia_ 397 LQSLQATIRFF 407 (408)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.82 E-value=2e-08 Score=106.98 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=106.3
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGV 695 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy 695 (818)
.++..+.+--+ ....|.+.| ++++.++|++||+++++|=+|+ +|.. .+ +......|+++++ |.++|.
T Consensus 126 ~~~~~v~~~~~-~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs-~G~~--~~--d~~~~~~D~~~~s~~K~l~gp- 194 (361)
T d1m32a_ 126 PTISHIAMVHS-ETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGI--PM--DIAALHIDYLISSANKCIQGV- 194 (361)
T ss_dssp TTCCEEEEESE-ETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTS--CC--CTTTTTCSEEEEESSSTTCCC-
T ss_pred cCccceEEEee-ecccccchh----hhhhhhhhcccceeeEeecccc-cCcc--cc--cccccccceEEeeecccccCC-
Confidence 34555556565 566788887 9999999999999999999995 4322 11 2223457999887 888762
Q ss_pred cccceeecchHHHhhccCChH--------------------------------------HHH---------------HHH
Q 003466 696 IPLAATLATNAVFDSFVGDSK--------------------------------------LWD---------------LEL 722 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~~~~~--------------------------------------~~~---------------~~l 722 (818)
.=+|.+..+++..+....... ... ..+
T Consensus 195 ~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 274 (361)
T d1m32a_ 195 PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSL 274 (361)
T ss_dssp SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 125667788887765432211 000 011
Q ss_pred HHHHHcCCCe--e--EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec----CCEEEEECCCCChHHHH
Q 003466 723 IQQISSHRTV--Q--RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVC 794 (818)
Q Consensus 723 ~~~l~~~~~v--~--~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----g~~ir~~ppl~~t~edI 794 (818)
.+.++..+.. . ..|. ..+.++.+..+. ......+.+.|.++|+.+.++ ++.+|+..--.++++||
T Consensus 275 ~~~~~~~g~~~~~~~~~rs-~~v~~~~~p~~~------~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di 347 (361)
T d1m32a_ 275 VAGMRALGFNTLLDDELHS-PIITAFYSPEDP------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADI 347 (361)
T ss_dssp HHHHHHTTCCBSSCGGGBC-SSEEEEECCCCT------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHH
T ss_pred HHHHhhcCCcccCChhhcC-CcEEEEECCCCC------CCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHH
Confidence 2223333321 1 1222 234455553321 012557889999999998763 47789974324789999
Q ss_pred HHHHHHHHHHH
Q 003466 795 SQLLLKLYQRL 805 (818)
Q Consensus 795 d~~~~~l~~~l 805 (818)
++++++|+++|
T Consensus 348 ~~lv~al~~~L 358 (361)
T d1m32a_ 348 TALLTAIRTAM 358 (361)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHc
Confidence 99999999876
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.76 E-value=1.9e-08 Score=100.58 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCC-EEEEEcCCCChHHHHHHHH
Q 003466 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAY 271 (818)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~ 271 (818)
..+.+.+.+..+.+. +|++||++.+++... .... ...+. ||+|+.....++.++...+
T Consensus 97 ~~~~~~~~~~~l~~~-------------~d~IiiD~~~~~~~~------~~~~--l~~aD~viiv~~~~~~s~~~~~~~~ 155 (237)
T d1g3qa_ 97 DPRKLPEVIKSLKDK-------------FDFILIDCPAGLQLD------AMSA--MLSGEEALLVTNPEISCLTDTMKVG 155 (237)
T ss_dssp CGGGHHHHHHTTGGG-------------CSEEEEECCSSSSHH------HHHH--HTTCSEEEEEECSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc-------------CCEEEEccccccccc------chhh--hhhhhcccccccccceecchhhHHH
Confidence 445555555554444 999999997754322 1111 12233 7788888888999999999
Q ss_pred HHHHhCCCcEEEEEEccCCC----CCHHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 272 ESLKLRGYDVVAVVFEDHGL----VNEVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~~----~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
+.+++.++++.|+|+|++.. .....+++++ ++|+++ ||+.+.+
T Consensus 156 ~~~~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~--~~~~~~~IP~d~~v 203 (237)
T d1g3qa_ 156 IVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVM--EVPLLAVIPEDPAI 203 (237)
T ss_dssp HHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHH--CSCEEEEEECCHHH
T ss_pred HHHhhhhhhhhhhhhcccccccchhhhHHHHhhc--CceEEEEeCCCHHH
Confidence 99999999999999999832 2345666777 999999 9977553
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=98.75 E-value=2e-08 Score=107.48 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=92.8
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecc--cccCCccccceeecchHH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK--LLTGGVIPLAATLATNAV 707 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK--gLggGy~PlsAvl~~~~i 707 (818)
....|.+.+ ++++.++|+++|+++++|-+|+ +|-. ..-.+ ....|++++++ .++|+ -=++.+..+++.
T Consensus 153 ~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~gp-~g~~~~~~~~~~ 222 (377)
T d1vjoa_ 153 ETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGV--PIFLD--AWGVDLAYSCSQKGLGCS-PGASPFTMSSRA 222 (377)
T ss_dssp ETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTS--CCCTT--TTTCSEEECCSSSTTCSC-SSCEEEEECHHH
T ss_pred eccceeeec----hhhhhhhhhhccceEEEecchh-hhhh--hhccc--ccccceeeecccccccCC-CEEEEecchhhH
Confidence 556788887 8999999999999999999994 4322 11223 33567776654 55553 123445566766
Q ss_pred HhhccCChH---------------------------------------HHH---------------HHHHHHHHcCCC--
Q 003466 708 FDSFVGDSK---------------------------------------LWD---------------LELIQQISSHRT-- 731 (818)
Q Consensus 708 ~~~l~~~~~---------------------------------------~~~---------------~~l~~~l~~~~~-- 731 (818)
.+....... ... ..+.+.+...+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~ 302 (377)
T d1vjoa_ 223 IEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSL 302 (377)
T ss_dssp HHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred HhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCcee
Confidence 553221100 000 011222222221
Q ss_pred ee--EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEee-----cCCEEEEEC-CCCChHHHHHHHHHHHH
Q 003466 732 VQ--RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRP-----LGNVIYLMC-GPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 732 v~--~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p-----~g~~ir~~p-pl~~t~edId~~~~~l~ 802 (818)
+. ..| ...++.+.+.+. .....+.+.|+ ++||.+.. .++.+|+.+ ....|+||||+++++|+
T Consensus 303 ~~~~~~r-s~~v~~~~~p~~--------~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~ 373 (377)
T d1vjoa_ 303 HVEKEYR-LPTLTTVCIPDG--------VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALE 373 (377)
T ss_dssp SSCGGGB-CSSEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred ecChHhc-CCeEEEEECCCC--------CCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHH
Confidence 11 112 223445555322 22556777776 45998865 357899985 45668999999999999
Q ss_pred HHHH
Q 003466 803 QRLE 806 (818)
Q Consensus 803 ~~l~ 806 (818)
++|+
T Consensus 374 ~~l~ 377 (377)
T d1vjoa_ 374 QVLR 377 (377)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8873
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=98.74 E-value=3.6e-07 Score=96.72 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=99.8
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc---EEEeccccc-CCcc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD---IACYGKLLT-GGVI 696 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD---ivtlgKgLg-gGy~ 696 (818)
..++..| ++-.|.+.. . +.|.+ +.++++++|.||+...+.-........ -.+. +.++||.++ .| +
T Consensus 141 ~l~l~nP--~NPtG~~~s-~---~~l~~-~~~~~~~ii~Dd~~~~~~~~~~~~~~~---~~~~~i~~~S~SK~~~~~G-~ 209 (334)
T d2f8ja1 141 VVFIPNP--NNPTGHVFE-R---EEIER-ILKTGAFVALDEAYYEFHGESYVDFLK---KYENLAVIRTFSKAFSLAA-Q 209 (334)
T ss_dssp EEEEESS--CTTTCCCCC-H---HHHHH-HHTTTCEEEEECTTGGGTCCCCGGGGG---TCSSEEEEEESTTTSSCTT-T
T ss_pred EEEeccc--ccccceeec-H---HHhhc-cccceeEEeecccchhhcccccccccc---cCceEEEEecCccccchhh-h
Confidence 3556667 577777774 3 34444 456899999999986553222222111 1122 337999887 67 7
Q ss_pred ccceeecchHHHhhccCCh------H---------------------H---HHHHHHHHHHcCCCeeEEEeeeeEEEEEE
Q 003466 697 PLAATLATNAVFDSFVGDS------K---------------------L---WDLELIQQISSHRTVQRVVALGTLCAIEL 746 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~------~---------------------~---~~~~l~~~l~~~~~v~~vrg~Gl~~~iel 746 (818)
-+|.+++++++++.+.... . . .++.+.+.+++++. .-+...|.++-+.+
T Consensus 210 R~G~~~~~~~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~~~~g~f~~~~~ 288 (334)
T d2f8ja1 210 RVGYVVASEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGY-RITDSRGNFVFVFM 288 (334)
T ss_dssp CEEEEEECHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTC-EECCCCSSEEEEEC
T ss_pred hhhhcccchHHHHHHHHhhcccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCCC-eECCCCceEEEEEC
Confidence 9999999999987663210 0 0 01123444555543 22234555443433
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
.. ..+..+++.|.++||++++..+-+|++.. +++|+++++++|++
T Consensus 289 ~~---------~~~~~~~~~L~~~GI~vr~~~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 289 EK---------EEKERLLEHLRTKNVAVRSFREGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp CH---------HHHHHHHHHHHHTTEECEEETTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CC---------CCHHHHHHHHHHCCCEECCCCCeEEEEcC---CHHHHHHHHHHHhc
Confidence 22 34677899999999999988889999853 67888888887764
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=3.9e-07 Score=97.14 Aligned_cols=164 Identities=18% Similarity=0.251 Sum_probs=104.2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CC
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GG 694 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gG 694 (818)
++.+|++-+- ...+|.+. +...++.+.+.|+ ++.++|+||...-|..-.. ........+..+ +|||.+| .|
T Consensus 144 ~~~~v~~~~p-nNPtG~~~-~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~--~~~~~~~~~~~iv~~S~SK~~~laG 218 (354)
T d1fg7a_ 144 GVKVVYVCSP-NNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQAS--LAGWLAEYPHLAILRTLSKAFALAG 218 (354)
T ss_dssp TEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGC--SGGGTTTCTTEEEEEESSSTTCCGG
T ss_pred ccceeeccCC-CccceeEe-eeccccccccccc-ccccccccccchhhccccc--cchhhcccccceEEeCCccccCCCc
Confidence 4556666663 67777766 6777888877776 5777888888765632211 111222233333 8999998 77
Q ss_pred ccccceeecchHHHhhccCCh------H----------------HH----------HHHHHHHHHcCCCeeEEEee-eeE
Q 003466 695 VIPLAATLATNAVFDSFVGDS------K----------------LW----------DLELIQQISSHRTVQRVVAL-GTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~------~----------------~~----------~~~l~~~l~~~~~v~~vrg~-Gl~ 741 (818)
+-+|.+++++++++.+.... . .+ ++.+.+.+...+.+..+... |.+
T Consensus 219 -lRiGy~i~~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f 297 (354)
T d1fg7a_ 219 -LRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNY 297 (354)
T ss_dssp -GCCEEEEECHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSE
T ss_pred -cccccccccchhhhhhhhhcCccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceE
Confidence 79999999999887663210 0 00 01233445566766555443 444
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec------CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
+-+++. + +..+++.|+++||++++. .+.+|++. -|++|.++++++|+
T Consensus 298 ~~~~~~-~----------~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisi---gt~ee~~~~l~aLk 350 (354)
T d1fg7a_ 298 ILARFK-A----------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITV---GTREESQRVIDALR 350 (354)
T ss_dssp EEEEET-T----------HHHHHHHHHHTTEECEECTTSTTCTTEEEEEC---CCHHHHHHHHHHHH
T ss_pred EEEeCC-C----------HHHHHHHHHHCCcEEecCCCCCCCCCEEEEEe---CCHHHHHHHHHHHh
Confidence 444443 2 446888999999999873 27789875 36788888888775
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.69 E-value=3.5e-08 Score=98.59 Aligned_cols=102 Identities=14% Similarity=0.197 Sum_probs=74.0
Q ss_pred CChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003466 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (818)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (818)
...+.+.+.++.+.+. +|++||....++... ....... ---|++|+....-++.++...+
T Consensus 94 ~~~~~l~~~l~~l~~~-------------~D~viiD~~~~~~~~------~~~~l~~-ad~v~~v~~~~~~~~~~~~~~~ 153 (232)
T d1hyqa_ 94 ANPEKLEDVLTQIMES-------------TDILLLDAPAGLERS------AVIAIAA-AQELLLVVNPEISSITDGLKTK 153 (232)
T ss_dssp HCHHHHHHHHHHHHHT-------------CSEEEEECCSSSSHH------HHHHHHH-SSEEEEEECSSHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhhc-------------cceeeecccccccch------hHHHhhh-hheeeeeccccccchhhhhhhh
Confidence 3456777777777655 999999997755321 2222222 2357788888888888888888
Q ss_pred HHHHhCCCcEEEEEEccCCCC----CHHHHHHhhcCCCCEEe-cCCCCC
Q 003466 272 ESLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~~~----~~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
+.++..+.++.|+|+|++... ..+.+++.+ ++|+++ ||+.+.
T Consensus 154 ~~~~~~~~~~~~iv~N~~~~~~~~~~~~~i~~~~--~~~~~~~IP~d~~ 200 (232)
T d1hyqa_ 154 IVAERLGTKVLGVVVNRITTLGIEMAKNEIEAIL--EAKVIGLIPEDPE 200 (232)
T ss_dssp HHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHT--TSCEEEEEECCHH
T ss_pred hhhhhcccccccccccccccccccchhhhHHhhc--CCeEEEECCCCHH
Confidence 888888999999999998433 234566777 999999 998754
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.59 E-value=3.7e-07 Score=97.60 Aligned_cols=181 Identities=15% Similarity=0.063 Sum_probs=106.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
.++-.+++.+.++...+. .-+...+|+++|+++++. +.+++++||+.|+..|++.. . -+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~-----~G~~v~~~E~~la~~~g~---~~ai~~~sgt~Al~~al~al-~---~~~-------- 70 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWIT-----TGPKNQELEAAFCRLTGN---QYAVAVSSATAGMHIALMAL-G---IGE-------- 70 (376)
T ss_dssp CHHHHHHHHHHHHHTCCS-----SSHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T---CCT--------
T ss_pred CHHHHHHHHHHHhcCCCc-----CCHHHHHHHHHHHHHHCc---CeEEEeCCHHHHHHHHHHHh-C---CCC--------
Confidence 355567788877763222 136778999999999984 68999999999999999865 1 111
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (818)
...||+-.-+|++ +..++...|.... +.+. .|+.+
T Consensus 71 --------gdeVi~~~~~~~~-~~~ai~~~g~~pv--------------~~d~-------------~~~~~--------- 105 (376)
T d1mdoa_ 71 --------GDEVITPSMTWVS-TLNMIVLLGANPV--------------MVDV-------------DRDTL--------- 105 (376)
T ss_dssp --------TCEEEEESSSCHH-HHHHHHHTTCEEE--------------EECB-------------CTTTC---------
T ss_pred --------CCEEEEecccccc-cccchhcccccee--------------eecc-------------ccccc---------
Confidence 1367776666655 4444444332200 0000 00000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
..| .+.|++.+. .++.|||+--+ .|...+ +.+|.++|++||+++
T Consensus 106 --~~d------------------~~~l~~~i~--------~~tkaIi~~h~----~G~~~~----~~~i~~i~~~~~i~v 149 (376)
T d1mdoa_ 106 --MVT------------------PEHIEAAIT--------PQTKAIIPVHY----AGAPAD----LDAIYALGERYGIPV 149 (376)
T ss_dssp --CBC------------------HHHHHHHCC--------TTEEEECCBCG----GGCCCC----HHHHHHHHHHHTCCB
T ss_pred --CCC------------------HHHHHHhcC--------CCCeEEEEeCC----CCCccc----hhHHHHHHHhcCceE
Confidence 011 256777664 35677775443 344443 889999999999999
Q ss_pred EEeecccCcccCCccchhcccCCCCcEEEe----cccccCCccccceeecchH
Q 003466 658 IFDEVFTGFWRLGVETTADLLGCVPDIACY----GKLLTGGVIPLAATLATNA 706 (818)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivtl----gKgLggGy~PlsAvl~~~~ 706 (818)
|.|.+| ++|-. +--...|- -|..++ .|.|+.| -.|+++++.+
T Consensus 150 IeD~a~-a~g~~---~~~~~~g~-~g~~~~Sf~~~K~l~~g--~GG~i~t~~~ 195 (376)
T d1mdoa_ 150 IEDAAH-ATGTS---YKGRHIGA-RGTAIFSFHAIKNITCA--EGGIVVTDNP 195 (376)
T ss_dssp CEECTT-CTTCE---ETTEETTS-SSEEEEECCTTSSSCSS--SCEEEEESCH
T ss_pred Eeccch-hccCe---eCCeeccc-ccCccccCCCcCCCCCC--CCCEEEEech
Confidence 999999 45422 10011111 123333 4888754 2456666543
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=2.4e-06 Score=91.82 Aligned_cols=301 Identities=15% Similarity=0.086 Sum_probs=170.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChhHHHHHHHHHhccCCCC-CC-cEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW-AS-RAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~-l~-~v~f~~SGseA~e~ 476 (818)
..||+..|.- .+.-++.+.+|+++.+++..+ +....+..+....+|+.+.+..|... -+ .++.++++.+|...
T Consensus 27 ~~i~l~~G~P----d~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 102 (382)
T d1u08a_ 27 QAINLSQGFP----DFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 102 (382)
T ss_dssp TCEECCCSSC----SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCEEccCCCC----CCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHH
Confidence 5677776532 233267899999988876321 22234456777888888887654321 13 58999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.. ...| ..|+..+-+|...... +...|...
T Consensus 103 ~~~~l-----~~~g----------------d~vl~~~p~y~~~~~~-~~~~g~~~------------------------- 135 (382)
T d1u08a_ 103 AITAL-----VRNG----------------DEVICFDPSYDSYAPA-IALSGGIV------------------------- 135 (382)
T ss_dssp HHHHH-----CCTT----------------CEEEEEESCCTTHHHH-HHHTTCEE-------------------------
T ss_pred HHhhc-----cccc----------------ceEEEecccccchhhh-hhhccccc-------------------------
Confidence 99876 2222 3677777888764322 22221110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~ 635 (818)
..+..+... ...| .+.+++.+. .++.++++ -| +.-.|.
T Consensus 136 ---~~~~~~~~~----------~~~d------------------~~~l~~~~~--------~~~~~i~l~~P--~NPtG~ 174 (382)
T d1u08a_ 136 ---KRMALQPPH----------FRVD------------------WQEFAALLS--------ERTRLVILNTP--HNPSAT 174 (382)
T ss_dssp ---EEEECCTTT----------CCCC------------------HHHHHHHCC--------TTEEEEEEESS--CTTTCC
T ss_pred ---eeccccccc----------ccCC------------------HHHHhhhhc--------cCccEEEECCC--Cccccc
Confidence 000000000 0011 133444332 34544444 55 677777
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhc-ccCCCCc----EEEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD-LLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e-~~gv~PD----ivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. +.+.+++|.++|+++++.+|.||+..-+-..+...... .....+| +..+||.++ .| +-+|.+++++++.+
T Consensus 175 v~-~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG-~RiG~~v~~~~~~~ 252 (382)
T d1u08a_ 175 VW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISA 252 (382)
T ss_dssp CC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHH
T ss_pred cc-ccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCc-ccchhhhccchhHH
Confidence 66 78889999999999999999999986432222111110 0000112 347899887 67 79999999998877
Q ss_pred hccCChH----------------H--------------HHH---HHHHHHHcCCCeeEEEeeee-EEEEEEecCcccCCC
Q 003466 710 SFVGDSK----------------L--------------WDL---ELIQQISSHRTVQRVVALGT-LCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~~----------------~--------------~~~---~l~~~l~~~~~v~~vrg~Gl-~~~iel~~~~~~~~~ 755 (818)
.+..... . +.+ .+.+.+... .+.-+...|. ++-+.+....
T Consensus 253 ~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~p~gg~~~~~~~~~~~----- 326 (382)
T d1u08a_ 253 EIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVS----- 326 (382)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTC-----
T ss_pred HHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhccC-CcEEecCCceEEEEEecCCCC-----
Confidence 5432110 0 000 111222222 2333344444 3334443210
Q ss_pred chHHHHHHHHHHH-hCCceEeec--------C-CEEEEECCCCChHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLR-EDGVYMRPL--------G-NVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 756 ~~~~a~~~~~~l~-e~Gvlv~p~--------g-~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
.....+++++|+ ++||.+.|+ + +.+|++. ..++|+|++++++|++
T Consensus 327 -~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~--~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 327 -TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCF--AKKESTLLAAAERLRQ 381 (382)
T ss_dssp -CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEEC--CSCHHHHHHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEE--eCCHHHHHHHHHHHhC
Confidence 012445777765 679999873 1 4688876 3578899999888764
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.53 E-value=2.2e-06 Score=95.38 Aligned_cols=179 Identities=12% Similarity=0.025 Sum_probs=108.9
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEEEe--cccccCC
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGG 694 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gKgLggG 694 (818)
..+.+|+.--- ....|.+-| +++|.++|++||+.|.+|=++.|+...-...-.-..|+ ..|-+++ -|.+..-
T Consensus 234 ~~p~~VvataG-tt~~G~iDp----l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P 308 (476)
T d1js3a_ 234 LIPFFVVATLG-TTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN 308 (476)
T ss_dssp CEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC
T ss_pred CCcEEEeecCC-Cccceeecc----HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccC
Confidence 34455555543 566788887 99999999999999999988877644333222223355 4688775 5877766
Q ss_pred ccccceeecchHH--HhhccCC------------------------hH---------------------------HHHHH
Q 003466 695 VIPLAATLATNAV--FDSFVGD------------------------SK---------------------------LWDLE 721 (818)
Q Consensus 695 y~PlsAvl~~~~i--~~~l~~~------------------------~~---------------------------~~~~~ 721 (818)
++.|+++.++.- ...+... ++ .+.+.
T Consensus 309 -~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~ 387 (476)
T d1js3a_ 309 -FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHE 387 (476)
T ss_dssp -SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 477778887532 1111100 00 11123
Q ss_pred HHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCC-ceEee---cC-CEEEEECC-CCChHHHH
Q 003466 722 LIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG-VYMRP---LG-NVIYLMCG-PCSSPEVC 794 (818)
Q Consensus 722 l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~G-vlv~p---~g-~~ir~~pp-l~~t~edI 794 (818)
+.+.+++++.+.-+. ..-.++.+.+... ......+.+++.+.| +++.+ .| ..+|++.. ...|++||
T Consensus 388 l~~~l~~~~~fel~~~p~l~iV~Fr~~~~-------d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~di 460 (476)
T d1js3a_ 388 FEAFVLQDPRFEVCAEVTLGLVCFRLKGS-------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHV 460 (476)
T ss_dssp HHHHHHHCTTEEECSCCCSSEEEEEESSC-------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHH
T ss_pred HHHHHhcCCCeEEECCCceEEEEEEccCC-------hHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHH
Confidence 445556666543221 1122344544322 244567788888888 44544 23 36788765 45788999
Q ss_pred HHHHHHHHHHHHHHH
Q 003466 795 SQLLLKLYQRLEEFD 809 (818)
Q Consensus 795 d~~~~~l~~~l~~l~ 809 (818)
+.+++.|++..+++-
T Consensus 461 d~~~~~i~~~a~~ll 475 (476)
T d1js3a_ 461 RLAWEHIRGLAAELL 475 (476)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887763
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=98.52 E-value=3.4e-07 Score=98.19 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=93.4
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecc--cccCCccccceeecchHH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK--LLTGGVIPLAATLATNAV 707 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK--gLggGy~PlsAvl~~~~i 707 (818)
...+|...+ .+++.++|+++|+++++|-+++ +| +...-.+ ....|++++|+ +++|- -=+|.+..+++.
T Consensus 152 ~t~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss-~g--~~pid~~--~~~~d~~~~s~~K~~~gp-~G~g~~~~~~~~ 221 (388)
T d2ch1a1 152 DSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LC--GVPFYMD--KWEIDAVYTGAQKVLGAP-PGITPISISPKA 221 (388)
T ss_dssp ETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BT--TBCCCTT--TTTCCEEECCCC-CCCCC-SSCEEEEECHHH
T ss_pred ccccccccc----hhhhcchhccccceeeeeeeec-cc--ccccchh--ccCceEEEEccccccCCC-CeEEEEeccHHH
Confidence 445677777 7889999999999999999995 32 1122222 34568888775 45442 123445566655
Q ss_pred HhhccCCh------------------------H-----------HHHH---------------H-------HHHHHHcCC
Q 003466 708 FDSFVGDS------------------------K-----------LWDL---------------E-------LIQQISSHR 730 (818)
Q Consensus 708 ~~~l~~~~------------------------~-----------~~~~---------------~-------l~~~l~~~~ 730 (818)
.+...... . .+.+ . ....+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (388)
T d2ch1a1 222 LDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMG 301 (388)
T ss_dssp HHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcc
Confidence 44221100 0 0000 0 011111111
Q ss_pred ---CeeEE-EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEee-----cCCEEEEE-CCCCChHHHHHHHHH
Q 003466 731 ---TVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRP-----LGNVIYLM-CGPCSSPEVCSQLLL 799 (818)
Q Consensus 731 ---~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p-----~g~~ir~~-ppl~~t~edId~~~~ 799 (818)
.+.+- .....+.++.+.+. ..+.++...|.++ ||.+.+ .+..+|+. .....|+|||+++++
T Consensus 302 ~~~~~~~~~~rs~~v~~~~~p~g--------~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~ 373 (388)
T d2ch1a1 302 LDIFVKDPRHRLPTVTGIMIPKG--------VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLY 373 (388)
T ss_dssp CCBSSCSGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred cccccCCHHHhCCeEEEEECCCC--------CCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHH
Confidence 11111 11233455655432 1245677788765 998876 35689998 344568999999999
Q ss_pred HHHHHHHHHH
Q 003466 800 KLYQRLEEFD 809 (818)
Q Consensus 800 ~l~~~l~~l~ 809 (818)
+|+++|+.+.
T Consensus 374 alke~L~~~~ 383 (388)
T d2ch1a1 374 GFKESLKATH 383 (388)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 9999998864
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=5e-06 Score=88.68 Aligned_cols=296 Identities=14% Similarity=0.082 Sum_probs=160.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChh-------HHHHHHHHHhccCCCCCCcEEEeCChhH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEP-------ALECAELLLQGVGKGWASRAYFSDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~-------~~eLae~L~~~~~~~~l~~v~f~~SGse 472 (818)
=|||..+ .+.- .+.|.+|+.+.++.... + +...+.. ..+.-++++++++-. -+.++|++++|+
T Consensus 3 iyld~a~------~~~~-p~~v~ea~~~~~~~~~~-n-p~~~~~~~~~~~~~~~~aR~~ia~l~~~~-~~~i~~~~~~T~ 72 (376)
T d1eg5a_ 3 VYFDNNA------TTRV-DDRVLEEMIVFYREKYG-N-PNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATE 72 (376)
T ss_dssp EECBTTT------CCCC-CHHHHHHHHHHHHTCCC-C-TTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHH
T ss_pred EEEECcc------cccC-CHHHHHHHHHHHHHcCC-C-CccccHHHHHHHHHHHHHHHHHHHHcCCC-CCcEEEECCHHH
Confidence 5777654 4555 78899999988875321 1 1122222 222335677777653 368999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
++-.++....... ..+..++.....+|+........... .|
T Consensus 73 ~l~~~~~~~~~~~------------------~~~g~~v~~~~~~~~~~~~~~~~~~~--------------~g------- 113 (376)
T d1eg5a_ 73 SINWILKTVAETF------------------EKRKRTIITTPIEHKAVLETMKYLSM--------------KG------- 113 (376)
T ss_dssp HHHHHHHHHHHHT------------------TTTCCEEEECTTSCHHHHHHHHHHHH--------------TT-------
T ss_pred HHHhhhhcccccc------------------cccCcccccccccchhhHHHHHHHHh--------------cC-------
Confidence 9888887541111 12235666666666654333221100 00
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
...+.+|-.. .... | .+.+++.+. +++..|++--+ +..
T Consensus 114 ------~~v~~vp~~~-----------~~~i--------d--------~~~l~~~i~--------~~t~lv~is~v-~~~ 151 (376)
T d1eg5a_ 114 ------FKVKYVPVDS-----------RGVV--------K--------LEELEKLVD--------EDTFLVSIMAA-NNE 151 (376)
T ss_dssp ------CEEEECCBCT-----------TSCB--------C--------HHHHHHHCC--------TTEEEEEEESB-CTT
T ss_pred ------CEEEEEcCCC-----------CCeE--------C--------HHHHHHhcC--------CCceEEEEECC-ccc
Confidence 0001111000 0000 0 145555553 46788888887 888
Q ss_pred CCcccCCHHHHHHHHHHHHhc--CCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHH
Q 003466 633 GGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~ 708 (818)
.|.+.+ .+.+.++|+.+ |+++++|.+| ++|..-. +.....+|++ +.-|-+|. --.+++..+++..
T Consensus 152 tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q-~~g~~~~----d~~~~~~D~~~~s~~K~~gp--~G~~~l~~~~~~~ 220 (376)
T d1eg5a_ 152 VGTIQP----VEDVTRIVKKKNKETLVHVDAVQ-TIGKIPF----SLEKLEVDYASFSAHKFHGP--KGVGITYIRKGVP 220 (376)
T ss_dssp TCBBCC----HHHHHHHHHHHCTTCEEEEECTT-TTTTSCC----CCTTTCCSEEEEEGGGGTSC--TTCEEEEECTTSC
T ss_pred cceeee----ehhhhhhhhhcccCceeEEEeee-ccccccc----cccccCccceecccceeecC--CCceeEEeccCcc
Confidence 899887 88899988555 9999999999 4543321 1112346766 46676532 1233444443321
Q ss_pred -hhcc-CChH------------------------------------HHHHHHHHHHHcCCCee--E-EEeeeeEEEEEEe
Q 003466 709 -DSFV-GDSK------------------------------------LWDLELIQQISSHRTVQ--R-VVALGTLCAIELQ 747 (818)
Q Consensus 709 -~~l~-~~~~------------------------------------~~~~~l~~~l~~~~~v~--~-vrg~Gl~~~iel~ 747 (818)
..+. +... .....+.+.+....... . .........+.+.
T Consensus 221 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 300 (376)
T d1eg5a_ 221 IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFP 300 (376)
T ss_dssp CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECT
T ss_pred cCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccC
Confidence 0000 0000 00112233333332210 0 0011112222222
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
. ..+..+...|-++||.++++ ++.+|++|....|++|||+++++|++
T Consensus 301 ~---------~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~ 371 (376)
T d1eg5a_ 301 N---------IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEE 371 (376)
T ss_dssp T---------CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred C---------CCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1 12556777788899987631 13699999998999999999999999
Q ss_pred HHH
Q 003466 804 RLE 806 (818)
Q Consensus 804 ~l~ 806 (818)
+++
T Consensus 372 iv~ 374 (376)
T d1eg5a_ 372 ILS 374 (376)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=1.4e-05 Score=88.00 Aligned_cols=310 Identities=11% Similarity=-0.040 Sum_probs=165.9
Q ss_pred CCCCHHHHHHHHHhhhhccccc-CCCCCChhHHHHHHHHHhccCCCC--CC--cEEEeCChhHHHHHHHHHHHHHhhhcc
Q 003466 415 ATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKGW--AS--RAYFSDNGSTAIEIALKMAFRKFSFDH 489 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~~~~~~~-~~~~~~~~~~eLae~L~~~~~~~~--l~--~v~f~~SGseA~e~ALklA~r~~t~~~ 489 (818)
+- +|++.+.+.+.+++-.... ..-.+++...++.+.|+++++-+. .. --.++++|||||..|+..|++.+..+.
T Consensus 65 ~~-~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~ 143 (450)
T d1pmma_ 65 WD-DENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 143 (450)
T ss_dssp CC-CHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHh
Confidence 45 7999898888777632211 000123455566667777765321 11 247899999999999999954443221
Q ss_pred -cccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC-cch
Q 003466 490 -EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEW 567 (818)
Q Consensus 490 -G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~-P~~ 567 (818)
+. + +.....+++. ++.|.+..-++...|.... .++. |..
T Consensus 144 ~~~-----g-----~~~~~~~~~~-~~~H~s~~Kaa~~~gi~~~----------------------------~v~~~~~~ 184 (450)
T d1pmma_ 144 EAA-----G-----KPTDKPNLVC-GPVQICWHKFARYWDVELR----------------------------EIPMRPGQ 184 (450)
T ss_dssp HHH-----T-----CCCSCCEEEE-SSCCHHHHHHHHHTTCEEE----------------------------ECCCBTTB
T ss_pred hhc-----C-----CCCCCceEEe-cccHHHHHHHHHHcCCCce----------------------------EeeecCCC
Confidence 10 0 0223344544 4668766555554433210 0100 100
Q ss_pred hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHH
Q 003466 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (818)
Q Consensus 568 ~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~Lr 647 (818)
+ .-| .+.|++.+. +++++|++=-. ....|.+.| .+-+..+.
T Consensus 185 ~-----------~~d------------------~~~L~~~i~--------~~t~~Vv~t~g-tt~tG~~dp-v~~i~~i~ 225 (450)
T d1pmma_ 185 L-----------FMD------------------PKRMIEACD--------ENTIGVVPTFG-VTYTGNYEF-PQPLHDAL 225 (450)
T ss_dssp C-----------SCC------------------HHHHHHHCC--------TTEEEEECBBS-CTTTCBBCC-HHHHHHHH
T ss_pred C-----------cCc------------------HHHHHHHhh--------hCceEEEeeee-eccCCCccc-cchhhHHH
Confidence 0 011 255666664 24445544332 455666664 33232222
Q ss_pred ---HHHHhcCCcEEEeecccCcccCCccchhcc----cCC-CCcEEEec-ccccCCccccceeecchHHHh--hc-----
Q 003466 648 ---KECQNRKIPVIFDEVFTGFWRLGVETTADL----LGC-VPDIACYG-KLLTGGVIPLAATLATNAVFD--SF----- 711 (818)
Q Consensus 648 ---eLc~~~gilLI~DEV~TGfGRtG~~~a~e~----~gv-~PDivtlg-KgLggGy~PlsAvl~~~~i~~--~l----- 711 (818)
++|+++|+.+.+|=++.||-- .|.... +++ ..|.++++ --.+++..+.|+++.+++-.. .+
T Consensus 226 ~~~~~a~~~~i~lHVDAA~gG~~~---p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~ 302 (450)
T d1pmma_ 226 DKFQADTGIDIDMHIDAASGGFLA---PFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVD 302 (450)
T ss_dssp HHHHHHHCCCCCEEEECTTGGGTH---HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEE
T ss_pred HHHHHHhccCcEEEeehhhcccee---eeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccC
Confidence 335779999999999976511 011111 133 35766554 223333357778888754321 00
Q ss_pred --c--------CChH----------------------------HHHHHHHHHHHcCCCeeEEE-e---e-eeEEEEEEec
Q 003466 712 --V--------GDSK----------------------------LWDLELIQQISSHRTVQRVV-A---L-GTLCAIELQA 748 (818)
Q Consensus 712 --~--------~~~~----------------------------~~~~~l~~~l~~~~~v~~vr-g---~-Gl~~~iel~~ 748 (818)
. ..++ .+.+.+.+.+++.+.+.-+- + . -..+++.+.+
T Consensus 303 yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~ 382 (450)
T d1pmma_ 303 YLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKD 382 (450)
T ss_dssp ETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECT
T ss_pred cCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCC
Confidence 0 0000 11123455667777543221 1 1 1245666654
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEee----c----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRP----L----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
... .. .....+..+|.++|.++.. . ...+|+.+.-.+|++++|++++.|+++++++++
T Consensus 383 ~~~-~~---~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 383 GED-PG---YTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 448 (450)
T ss_dssp TCC-CS---SCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-CC---CCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 321 11 1244678999999987642 1 146888888889999999999999999988763
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.41 E-value=5.2e-06 Score=89.94 Aligned_cols=256 Identities=14% Similarity=0.134 Sum_probs=153.0
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..+|-...|+++|+++-+. +.++.++||-.|+.+++... -+.| ..||+.+..|+|.
T Consensus 64 ~~nPt~~~LE~~la~LEgg---~~a~~~sSGMaAi~~~l~~l-----~~~G----------------d~iv~~~~~Yg~t 119 (398)
T d1qgna_ 64 YGNPTTVVLEEKISALEGA---ESTLLMASGMCASTVMLLAL-----VPAG----------------GHIVTTTDCYRKT 119 (398)
T ss_dssp GCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHH-----SCSS----------------CEEEEETTSCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---ceEEEecCcchHHHHHHhhc-----cccc----------------ccccccccccchh
Confidence 3478889999999998763 68888999999999888754 1222 3788888888764
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
.......- ...|.. +.|-|. .+ .
T Consensus 120 ~~l~~~~~--------------~~~gi~------------------------------~~~~~~-------~~--~---- 142 (398)
T d1qgna_ 120 RIFIETIL--------------PKMGIT------------------------------ATVIDP-------AD--V---- 142 (398)
T ss_dssp HHHHHHTG--------------GGGTCE------------------------------EEEECS-------SC--H----
T ss_pred hhhhcccc--------------cccccc------------------------------cccccc-------cc--h----
Confidence 32111000 000000 001110 00 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+..+..+ ..++.+|++|.. .+-..-++ + ++++.++|+++|+++|+|...... ..+.-+.
T Consensus 143 -~~~~~~~~--------~~~t~~v~~Esp-sNP~l~v~-D---i~~ia~ia~~~g~~~vVDnT~atP------~~~~Pl~ 202 (398)
T d1qgna_ 143 -GALELALN--------QKKVNLFFTESP-TNPFLRCV-D---IELVSKLCHEKGALVCIDGTFATP------LNQKALA 202 (398)
T ss_dssp -HHHHHHHH--------HSCEEEEEEESS-CTTTCCCC-C---HHHHHHHHHHTTCEEEEECTTTCT------TTCCTTT
T ss_pred -hhhhhhhc--------cccceEEEccCc-cccccccc-h---HHHHHHHHhhcCCEEEecceeecc------ccCCchh
Confidence 01122222 257889999996 55544444 3 999999999999999999987321 2222233
Q ss_pred CCCcEE--EecccccC-CccccceeecchHHHhhccCChH-----------------------HHH------HHHHHHHH
Q 003466 680 CVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSFVGDSK-----------------------LWD------LELIQQIS 727 (818)
Q Consensus 680 v~PDiv--tlgKgLgg-Gy~PlsAvl~~~~i~~~l~~~~~-----------------------~~~------~~l~~~l~ 727 (818)
.=.||+ .+.|-++| |=.-.|+++++++.+..+..... .++ ..+.+-|+
T Consensus 203 ~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~ 282 (398)
T d1qgna_ 203 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILE 282 (398)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 336777 47788886 22445677788877665432111 111 13456678
Q ss_pred cCCCeeEEE------------------eeeeEEEEEEecCcccCCCchHHHHHHHHHHH--hCCceEe--------e---
Q 003466 728 SHRTVQRVV------------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR--EDGVYMR--------P--- 776 (818)
Q Consensus 728 ~~~~v~~vr------------------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~--e~Gvlv~--------p--- 776 (818)
.||.|..|. |.|.++.+++..+. +.+..|.+.|. ..|.-.. |
T Consensus 283 ~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~-------~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~ 355 (398)
T d1qgna_ 283 AHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-------LTTAKFVDALKIPYIAPSFGGCESIVDQPAIM 355 (398)
T ss_dssp TCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-------HHHHHHHHHCSSSEECSCCCSSSCEEECHHHH
T ss_pred hCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCH-------HHHHHHHHcCCcceeeeCCCCCcceeeCcchh
Confidence 899988875 55778888886442 45666776653 2222111 1
Q ss_pred ---------------cCCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 777 ---------------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 777 ---------------~g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
..+.||++.=+ |+++.+++-|+++|++
T Consensus 356 th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL~~ 397 (398)
T d1qgna_ 356 SYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALDS 397 (398)
T ss_dssp HSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHhc
Confidence 12567777554 5566667777777654
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=1.1e-06 Score=94.96 Aligned_cols=88 Identities=16% Similarity=0.032 Sum_probs=58.8
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch---hc---ccCCCCcEEEecccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT---AD---LLGCVPDIACYGKLL 691 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a---~e---~~gv~PDivtlgKgL 691 (818)
.+..++++-.- ++-.|.+. +.+.+++|.++|++|++++|.||++.+|...+.... .. ......-+..++|.+
T Consensus 171 ~~~~~i~~~~P-~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~ 248 (396)
T d2q7wa1 171 AGDVVLFHGCC-HNPTGIDP-TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNF 248 (396)
T ss_dssp TTCEEEEECSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred cCcEEEEecCC-cCCcCeec-CHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccc
Confidence 34445555442 77788777 899999999999999999999999998844333211 11 112222334688987
Q ss_pred c-CCccccceeecchHHH
Q 003466 692 T-GGVIPLAATLATNAVF 708 (818)
Q Consensus 692 g-gGy~PlsAvl~~~~i~ 708 (818)
+ -| +-+|.+++...+.
T Consensus 249 ~~~G-~R~G~~~~~~~~~ 265 (396)
T d2q7wa1 249 GLYN-ERVGACTLVAADS 265 (396)
T ss_dssp TCGG-GCCEEEEEECSSH
T ss_pred cccC-CCccccccchhHH
Confidence 6 35 5777788765443
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=98.39 E-value=5e-06 Score=89.70 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=109.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
..+-.+++.+.++...... ..-+...++++++++.+|. ..+++++||+.|++.|++.+ . -+.|
T Consensus 12 ~~~~~~~~~~~l~~g~~~~---~~g~~v~~fE~~~a~~~g~---~~~v~~~SGt~Al~lal~~l-~---~~~g------- 74 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWR---MGGDEVNSFEREFAAHHGA---AHALAVTNGTHALELALQVM-G---VGPG------- 74 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBT---TTCSHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T---CCTT-------
T ss_pred CHHHHHHHHHHHHcCCeee---cCCHHHHHHHHHHHHHHCc---CeEEEeCCHHHHHHHHHHHc-C---CCCC-------
Confidence 3455778888887643211 2246788999999999984 68999999999999999865 1 1122
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (818)
.+||.-.-+|.. +..++...|.. |. +.+. .|.
T Consensus 75 ---------deVi~p~~t~~a-~~~ai~~~g~~--------p~------~~d~-------------~~~----------- 106 (384)
T d1b9ha_ 75 ---------TEVIVPAFTFIS-SSQAAQRLGAV--------TV------PVDV-------------DAA----------- 106 (384)
T ss_dssp ---------CEEEEESSSCTH-HHHHHHHTTCE--------EE------EECB-------------CTT-----------
T ss_pred ---------CEEEEecccccc-ccccccccccc--------cc------cccc-------------ccc-----------
Confidence 367766666544 33333333321 00 0000 000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
+++- + .+.+++.+ ..++.+|++..+ .| .... +.+++++|+++|+.+
T Consensus 107 -~~~~---------d--------~~~~~~~i--------~~~tk~i~~~~~-~g---~~~d----~~~i~~~~~~~~i~l 152 (384)
T d1b9ha_ 107 -TYNL---------D--------PEAVAAAV--------TPRTKVIMPVHM-AG---LMAD----MDALAKISADTGVPL 152 (384)
T ss_dssp -TCCB---------C--------HHHHHHHC--------CTTEEEECCBCG-GG---CCCC----HHHHHHHHHHHTCCB
T ss_pred -cccc---------c--------hhhhcccc--------cccccccccccc-cc---cccc----cccchhhhhhhhhhh
Confidence 0110 0 13455444 346778876665 33 2222 789999999999999
Q ss_pred EEeecccCcccCCccchhcccCCCCcEEE----ecccccCCccccceeecc-hHHHh
Q 003466 658 IFDEVFTGFWRLGVETTADLLGCVPDIAC----YGKLLTGGVIPLAATLAT-NAVFD 709 (818)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivt----lgKgLggGy~PlsAvl~~-~~i~~ 709 (818)
|-|-+|+ +|-+ +.-...|-.-|+.+ ..|.++.|- .|+++++ +++++
T Consensus 153 ieD~a~a-~ga~---~~g~~~g~~g~~~~~Sf~~~K~i~~g~--GG~i~t~~~~~~~ 203 (384)
T d1b9ha_ 153 LQDAAHA-HGAR---WQGKRVGELDSIATFSFQNGKLMTAGE--GGAVVFPDGETEK 203 (384)
T ss_dssp CEECTTC-TTCE---ETTEEGGGSSSCEEEECCTTSSSCSSS--CEEEEECTTCHHH
T ss_pred hhhhcee-cccc---cCCEecCcccccceecccccccccccc--cchhhhhhHHHHH
Confidence 9999994 4322 11122333445554 368887552 4556654 44433
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=98.38 E-value=1.4e-06 Score=94.70 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=57.8
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc---chh-cccCC-CCc--EEEeccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTA-DLLGC-VPD--IACYGKL 690 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~---~a~-e~~gv-~PD--ivtlgKg 690 (818)
++..++++-+- ++-.|.+. +.+.+++|.++|++||+++|.||++..|...+.. +.. ..... ... +..+||.
T Consensus 182 ~~~~~il~~~P-~NPTG~v~-s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 259 (412)
T d1ajsa_ 182 EFSIFVLHACA-HNPTGTDP-TPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKN 259 (412)
T ss_dssp TTCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTT
T ss_pred CCcEEEEecCC-CCCcCCCC-CHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccccccccccc
Confidence 44556666543 78888777 8999999999999999999999999988555431 111 11111 122 2367898
Q ss_pred ccCCccccceeecch
Q 003466 691 LTGGVIPLAATLATN 705 (818)
Q Consensus 691 LggGy~PlsAvl~~~ 705 (818)
.+..-.-+|.+++..
T Consensus 260 ~~~~G~R~G~~~~~~ 274 (412)
T d1ajsa_ 260 FGLYNERVGNLTVVA 274 (412)
T ss_dssp SCCGGGCEEEEEEEC
T ss_pred ccCCCCCccccccch
Confidence 874225777777764
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=98.35 E-value=5e-06 Score=89.89 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=62.1
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc----hhcccCCCCc---EEEecc
Q 003466 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET----TADLLGCVPD---IACYGK 689 (818)
Q Consensus 617 ~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~----a~e~~gv~PD---ivtlgK 689 (818)
..+..++++-.- ++-.|.+. +.+.+++|.++|++|++++|.||++.+|...+... ........+. +..++|
T Consensus 173 ~~~~~~iii~~p-~NPTG~~~-s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk 250 (401)
T d7aata_ 173 PEKSIILLHACA-HNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAK 250 (401)
T ss_dssp CTTCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred CCceEEEEecCC-CCCccccC-CHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccc
Confidence 344556666553 88888877 89999999999999999999999999885444311 1111122222 347889
Q ss_pred ccc-CCccccceeecchHHHh
Q 003466 690 LLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 690 gLg-gGy~PlsAvl~~~~i~~ 709 (818)
.++ .| +-+|.+++..++.+
T Consensus 251 ~~~~~G-~RiG~~~~~~~~~~ 270 (401)
T d7aata_ 251 NMGLYG-ERAGAFTVICRDAE 270 (401)
T ss_dssp TSCCGG-GCEEEEEEECSSHH
T ss_pred cceeec-cccceeecchHHHH
Confidence 887 45 68888887655443
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=98.30 E-value=1.8e-05 Score=85.33 Aligned_cols=169 Identities=14% Similarity=0.046 Sum_probs=109.8
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++-...|+++|+++-+. +.++.++||-.|+-+++-.. -+.| ..||+.+..|+|.
T Consensus 56 ~~nPT~~~LE~~la~LEg~---~~a~~~~SGmaAi~~~l~~l-----~~~G----------------d~vl~~~~~Yg~t 111 (392)
T d1gc0a_ 56 ISNPTLNLLEARMASLEGG---EAGLALASGMGAITSTLWTL-----LRPG----------------DEVLLGNTLYGCT 111 (392)
T ss_dssp -CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-----CCTT----------------CEEEEESSCCSHH
T ss_pred CCChHHHHHHHHHHHHhCC---cceeehhhHHHHHHHHHHhh-----ccCC----------------Ceeecccccchhh
Confidence 4578899999999998763 67888899999998888765 1223 3899999999985
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
....-. +.+.+|. .++|.|.. |
T Consensus 112 ~~l~~~--------------~~~~~Gi------------------------------~~~~~d~~-------d------- 133 (392)
T d1gc0a_ 112 FAFLHH--------------GIGEFGV------------------------------KLRHVDMA-------D------- 133 (392)
T ss_dssp HHHHHH--------------TGGGGTC------------------------------EEEEECTT-------C-------
T ss_pred hhhhhh--------------hhccCCc------------------------------ccccCCcc-------C-------
Confidence 321100 0011111 01122210 1
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.++ ++...|++|.. .+...-++. ++.+.++|+++|+++|+|...+. ...+.-+.
T Consensus 134 -~~~~~~ai~--------~~t~lv~~Esp-~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~at------P~~~~Pl~ 193 (392)
T d1gc0a_ 134 -LQALEAAMT--------PATRVIYFESP-ANPNMHMAD----IAGVAKIARKHGATVVVDNTYCT------PYLQRPLE 193 (392)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTH------HHHCCGGG
T ss_pred -HHHHHHhCC--------CCCeEEEeccc-ccceeeecc----hHHHHHHHHhcCCEEEEecCccC------ccccChHH
Confidence 145666664 46789999997 666655555 99999999999999999998741 11222223
Q ss_pred CCCcEE--EecccccC-CccccceeecchHHHhh
Q 003466 680 CVPDIA--CYGKLLTG-GVIPLAATLATNAVFDS 710 (818)
Q Consensus 680 v~PDiv--tlgKgLgg-Gy~PlsAvl~~~~i~~~ 710 (818)
.=.||+ -..|=++| |=.=.|+++++++.+..
T Consensus 194 ~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~ 227 (392)
T d1gc0a_ 194 LGADLVVHSATKYLSGHGDITAGIVVGSQALVDR 227 (392)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHH
T ss_pred hCCCEEEEecceeecCCcccccccccchhHHHHH
Confidence 336777 57799976 33445667777776643
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.27 E-value=2.1e-05 Score=83.93 Aligned_cols=55 Identities=13% Similarity=-0.020 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHH
Q 003466 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (818)
Q Consensus 419 p~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA 481 (818)
.+-.+|+.+.++..... .-+...+++++|++.+|. ..+++++||+.|+..|++..
T Consensus 12 ~~~~~~v~~~l~~~~~~-----~G~~v~~fE~~~~~~~g~---k~ai~~~Sgt~Al~~al~al 66 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLT-----QGKRSLLFEEALCEFLGV---KHALVFNSATSALLTLYRNF 66 (371)
T ss_dssp HHHHHHHHHHHTSSCCS-----SSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCcc-----CCHHHHHHHHHHHHHHCc---CeEEEEecHHHHHHHHHHHh
Confidence 44567888887653221 246789999999999984 68999999999999999976
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=98.24 E-value=1.7e-06 Score=93.22 Aligned_cols=88 Identities=16% Similarity=-0.076 Sum_probs=59.0
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh--c---ccCC-CCcEEEecccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--D---LLGC-VPDIACYGKLL 691 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~--e---~~gv-~PDivtlgKgL 691 (818)
.+...+++-+- ++-.|... +.+.+++|.++|++|++++|.||++.+|.-.+..... . ..+. .--+..++|..
T Consensus 168 ~~~~i~~~~~p-~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~ 245 (394)
T d2ay1a_ 168 KGDMVLLHGCC-HNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF 245 (394)
T ss_dssp TTCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT
T ss_pred cCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccc
Confidence 34456666553 88888877 8999999999999999999999999998544432111 1 1111 11233688877
Q ss_pred cC-CccccceeecchHHH
Q 003466 692 TG-GVIPLAATLATNAVF 708 (818)
Q Consensus 692 gg-Gy~PlsAvl~~~~i~ 708 (818)
+. | +-+|.+++...+.
T Consensus 246 ~~~G-~R~G~~~~~~~~~ 262 (394)
T d2ay1a_ 246 GIYR-ERTGCLLALCADA 262 (394)
T ss_dssp TCGG-GCEEEEEEECSSH
T ss_pred cCCc-ccccchhhchhHH
Confidence 63 5 5777777655443
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=1.4e-05 Score=85.04 Aligned_cols=165 Identities=16% Similarity=0.066 Sum_probs=99.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC--CcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccC-
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG- 693 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLgg- 693 (818)
-++.+-.|. ..|++.+ .+++.++|++|+ +++++|=|++ +|-. ..-.+.++ .|+++.| |+|+|
T Consensus 123 ~v~~~h~eT----stG~~~~----i~~i~~~~~~~~~~~l~~vDavss-~g~~--~i~~d~~~--iD~~~~~sqK~l~gp 189 (348)
T d1iuga_ 123 GLLLVHSET----STGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAMG--VDAAASGSQKGLMCP 189 (348)
T ss_dssp EEEEESEET----TTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGGT--CSEEEEESSSTTCCC
T ss_pred eeEEEecch----hhhhhcc----HHHHHHHHHhhhccceeechhhhc-cccc--cccccccc--CCEEEeccccceecC
Confidence 344444554 3577777 899999999985 7888898884 4321 22334444 5777554 88965
Q ss_pred -CccccceeecchHHHhhccCChH--------------------------HHHHH--------------------HHH-H
Q 003466 694 -GVIPLAATLATNAVFDSFVGDSK--------------------------LWDLE--------------------LIQ-Q 725 (818)
Q Consensus 694 -Gy~PlsAvl~~~~i~~~l~~~~~--------------------------~~~~~--------------------l~~-~ 725 (818)
| +|.++.+++..+.+...+. -+.+. +.+ .
T Consensus 190 pG---~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 266 (348)
T d1iuga_ 190 PG---LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGV 266 (348)
T ss_dssp SC---EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHH
T ss_pred Cc---eeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 4 4668889988876544221 00000 001 1
Q ss_pred HHcCCC--eeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHH
Q 003466 726 ISSHRT--VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLL 798 (818)
Q Consensus 726 l~~~~~--v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~ 798 (818)
.+..+. ..+-+ .-.+.++.+.+. .....+.+.|.++|+.+.++ |..+|+.-.=..+++|+++++
T Consensus 267 ~~~~gl~~~~~~~-s~~v~~~~~P~g--------~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~ 337 (348)
T d1iuga_ 267 GEEGGLRPVPKRF-SPAVAAFYLPEG--------VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVA 337 (348)
T ss_dssp HHHTTCEESCSSB-CTTCEEEECCTT--------CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHH
T ss_pred hhhhhhccChhhc-CCeEEEEECCCC--------CCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHH
Confidence 111111 01111 112344444321 12456788899999998763 468899744468899999999
Q ss_pred HHHHHHHHHH
Q 003466 799 LKLYQRLEEF 808 (818)
Q Consensus 799 ~~l~~~l~~l 808 (818)
++|+++|+++
T Consensus 338 ~~l~~~l~~~ 347 (348)
T d1iuga_ 338 GMFREVLEEI 347 (348)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=98.22 E-value=2.1e-05 Score=85.02 Aligned_cols=209 Identities=12% Similarity=0.090 Sum_probs=129.4
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
...+|-...|+++|+++-+. +.++.++||-.|+.+++-.. -+.| ..||+.+..|.|
T Consensus 59 R~~nPT~~~LE~~la~LEgg---~~a~~~sSGmaAi~~~l~~l-----l~~G----------------d~vi~~~~~Yg~ 114 (397)
T d1y4ia1 59 RLGNPTTDALEKKLAVLERG---EAGLATASGISAITTTLLTL-----CQQG----------------DHIVSASAIYGC 114 (397)
T ss_dssp TTSCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-----CCTT----------------CEEEEESSSCHH
T ss_pred CCCCHHHHHHHHHHHHHhCC---ccceeehHHHHHHHHHHhhc-----cCCC----------------Ceeeeecccccc
Confidence 45688999999999998763 57888899999998887654 1233 378888888877
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.....-. +....|+. ++|-|. .|
T Consensus 115 t~~~~~~--------------~l~~~Gi~------------------------------~~~vd~-------~d------ 137 (397)
T d1y4ia1 115 THAFLSH--------------SMPKFGIN------------------------------VRFVDA-------GK------ 137 (397)
T ss_dssp HHHHHHT--------------HHHHTTCE------------------------------EEEECT-------TS------
T ss_pred cchhhhc--------------ccCCCceE------------------------------eeccCC-------CC------
Confidence 4311100 00001110 111111 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.++ .+..+|.+|.. .+-..-+.. ++++.++|+++|+++|+|..... ...++-+
T Consensus 138 --~~~~~~~i~--------~~Tklv~~Esp-~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~at------P~~~~Pl 196 (397)
T d1y4ia1 138 --PEEIRAAMR--------PETKVVYIETP-ANPTLSLVD----IETVAGIAHQQGALLVVDNTFMS------PYCQQPL 196 (397)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC------TTTCCGG
T ss_pred --HHHHHHhcC--------CCCcEEEecCC-cccceeecc----cHHHHHHhhcCCceEEecCcccC------cccCcch
Confidence 145666653 47899999996 554444443 89999999999999999998632 1222222
Q ss_pred CCCCcEE--EecccccC-CccccceeecchHHHhhcc-----C--ChH------------------HHH------HHHHH
Q 003466 679 GCVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSFV-----G--DSK------------------LWD------LELIQ 724 (818)
Q Consensus 679 gv~PDiv--tlgKgLgg-Gy~PlsAvl~~~~i~~~l~-----~--~~~------------------~~~------~~l~~ 724 (818)
..-.||+ .+.|-++| +=.=.|+++++++.+...+ . +.. .++ .++.+
T Consensus 197 ~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~ 276 (397)
T d1y4ia1 197 QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIAR 276 (397)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHH
Confidence 2235777 56798886 2233456777776554321 0 110 111 13556
Q ss_pred HHHcCCCeeEEE------------------eeeeEEEEEEecC
Q 003466 725 QISSHRTVQRVV------------------ALGTLCAIELQAA 749 (818)
Q Consensus 725 ~l~~~~~v~~vr------------------g~Gl~~~iel~~~ 749 (818)
.|+.||.|..|. |.|.|+.+++...
T Consensus 277 ~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~ 319 (397)
T d1y4ia1 277 FLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG 319 (397)
T ss_dssp HHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTH
T ss_pred HHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCC
Confidence 678999998875 4578999988643
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.16 E-value=1.6e-05 Score=85.66 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=55.1
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGV 695 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy 695 (818)
.++.+|++|.. .+...-++. +++++++|+++|+++|+|....+. ..+.-+..-.|++ .+.|-++|.-
T Consensus 132 ~~t~li~~Etp-sNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~atP------~~~~Pl~~GaDiVvhS~TKyi~Ghs 200 (380)
T d1ibja_ 132 PQTKLVWLESP-TNPRQQISD----IRKISEMAHAQGALVLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHS 200 (380)
T ss_dssp SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTCT------TTCCGGGTTCSEEEEETTTTTTCSS
T ss_pred cCccEEEeccc-ccccccccc----HHHHHHHHHHcCCeEEeecccccc------ccccccccCCCEEEecccceecccc
Confidence 47899999997 666655554 899999999999999999997432 1222223336777 5789888621
Q ss_pred -cccceeecc-hHHHhhc
Q 003466 696 -IPLAATLAT-NAVFDSF 711 (818)
Q Consensus 696 -~PlsAvl~~-~~i~~~l 711 (818)
.=.|+++.+ +++.+.+
T Consensus 201 Dv~~G~v~~~~~~~~~~~ 218 (380)
T d1ibja_ 201 DVMAGVLAVKGEKLAKEV 218 (380)
T ss_dssp CCCCEEEEECSHHHHHHH
T ss_pred CccccccccchhhHHHHH
Confidence 223444444 5555433
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=98.15 E-value=6.4e-06 Score=89.51 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=62.0
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-------hcccCCCCcEE---E
Q 003466 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-------ADLLGCVPDIA---C 686 (818)
Q Consensus 617 ~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-------~e~~gv~PDiv---t 686 (818)
+....++++-+- ++-.|.+. +.+.+++|.++|+++++++|.||++.+|...+.... .+..+-.+..+ .
T Consensus 174 ~~~~~~i~i~~P-~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 251 (412)
T d1yaaa_ 174 PEGSIFVLHSCA-HNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQS 251 (412)
T ss_dssp CTTCEEEEECSS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEE
T ss_pred CCceEEEEecCC-CCCccccC-CHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEe
Confidence 344556666553 88888877 899999999999999999999999998855443211 11223333333 7
Q ss_pred eccccc-CCccccceeecchH
Q 003466 687 YGKLLT-GGVIPLAATLATNA 706 (818)
Q Consensus 687 lgKgLg-gGy~PlsAvl~~~~ 706 (818)
+||.++ .| +-+|.+++..+
T Consensus 252 ~SK~~~~~G-~RiG~~~~~~~ 271 (412)
T d1yaaa_ 252 FAKNAGMYG-ERVGCFHLALT 271 (412)
T ss_dssp CTTTSCCGG-GCEEEEEEECC
T ss_pred cCCccccCc-CceEEEEEchh
Confidence 999887 46 78998887644
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.13 E-value=9.3e-06 Score=86.61 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=50.0
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcC--CcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCcc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~ 696 (818)
..+++=-+ ....|...+ ++.+.++|++|+ +++++|=+|+ +|-. ..-.+.+ ..|++++| |+|+|- -
T Consensus 137 ~~v~~~~~-~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~g~~--pid~~~~--giD~~~~s~~K~l~gP-~ 205 (382)
T d2bkwa1 137 GAVTVTHV-DTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW--GVDFALTASQKAIGAP-A 205 (382)
T ss_dssp SEEEEESE-ETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT--TCSEEEEESSSTTCCC-S
T ss_pred hheeeeec-ccccccccc----chhhhhhccccccceeeeeecccc-cccc--ccccccc--CeeEEeecccccCcCC-C
Confidence 34444444 556778887 888888887765 9999999995 4221 1222233 35777654 888652 1
Q ss_pred ccceeecchHHHhh
Q 003466 697 PLAATLATNAVFDS 710 (818)
Q Consensus 697 PlsAvl~~~~i~~~ 710 (818)
=+|.+..+++..+.
T Consensus 206 G~g~l~vs~~~~~~ 219 (382)
T d2bkwa1 206 GLSISLCSSRFMDY 219 (382)
T ss_dssp CEEEEEECHHHHHH
T ss_pred chhhhhccHHHHhh
Confidence 25678888877553
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=1.8e-06 Score=93.43 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=55.4
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch--h-cccCCCCcE---EEecccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--A-DLLGCVPDI---ACYGKLL 691 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a--~-e~~gv~PDi---vtlgKgL 691 (818)
.+..++++-. .++-.|.+. +.+-+++|.++|++||+++|.||++.+|-..+.... . ...+...+. ..+||.+
T Consensus 172 ~~~~~~~~~~-p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 249 (397)
T d3tata_ 172 ARSIVLLHPC-CHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF 249 (397)
T ss_dssp SSCCCEECSS-SCSSSCCCC-CHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH
T ss_pred cccEEEEecC-CCCCCCeeC-CHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccc
Confidence 3444454444 378888777 899999999999999999999999998833332211 1 112222233 3688976
Q ss_pred cC-Cccccceeecch
Q 003466 692 TG-GVIPLAATLATN 705 (818)
Q Consensus 692 gg-Gy~PlsAvl~~~ 705 (818)
+- | +-+|.+++..
T Consensus 250 ~~~G-~RiG~~~~~~ 263 (397)
T d3tata_ 250 SLYG-ERVGGLSVMC 263 (397)
T ss_dssp TBTT-TCCBCCEEEC
T ss_pred cccC-ccccccccch
Confidence 53 4 5666676544
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=5.6e-05 Score=81.28 Aligned_cols=218 Identities=13% Similarity=0.128 Sum_probs=128.9
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..+|-...|+++|+++-+. +.++.++||=.|+-+++-.. -+.| ..||+.+..|.|.
T Consensus 47 ~~nPt~~~le~~la~LEgg---~~a~~~sSGMaAi~~~l~~l-----~~~g----------------d~vv~~~~~yg~t 102 (384)
T d1cs1a_ 47 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVF-----LKPG----------------DLLVAPHDCYGGS 102 (384)
T ss_dssp TCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-----CCTT----------------CEEEEETTCCHHH
T ss_pred CCCHHHHHHHHHHHHHhCC---CceEEecChHHHHHHHHhhc-----cccc----------------ceecccccccchh
Confidence 4578889999999998763 68888999999998887755 1222 3677777777553
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. .-+.-. ....+.. +.|-|. .|
T Consensus 103 ~-~~~~~~-------------~~~~g~~------------------------------~~~~d~-------~d------- 124 (384)
T d1cs1a_ 103 Y-RLFDSL-------------AKRGCYR------------------------------VLFVDQ-------GD------- 124 (384)
T ss_dssp H-HHHHHH-------------HTTTSCE------------------------------EEEECT-------TC-------
T ss_pred h-hhhhhh-------------hcccccc------------------------------cccccC-------CC-------
Confidence 2 111110 0000000 001110 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhccc
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~ 678 (818)
.+.++..+. ++..+|++|.. .+-.--++. ++++.++|+++|+++|+|.... .+ .+.-+
T Consensus 125 -~~~~~~~~~--------~~t~~v~~Esp-sNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~atP~-------~~~Pl 183 (384)
T d1cs1a_ 125 -EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPA-------LQNPL 183 (384)
T ss_dssp -HHHHHHHHH--------TCCSEEEEECS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTT-------TCCGG
T ss_pred -HHHHHhhcc--------ccccEEEEecc-ccccceecc----HHHHhhhhhhcCcEEEEeccccCcc-------ccccc
Confidence 134555554 35678999997 555444443 8999999999999999999973 22 12222
Q ss_pred CCCCcEE--EecccccC-Cccccceeecc-hHHHhhccCChH-----------------------HHH------HHHHHH
Q 003466 679 GCVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSFVGDSK-----------------------LWD------LELIQQ 725 (818)
Q Consensus 679 gv~PDiv--tlgKgLgg-Gy~PlsAvl~~-~~i~~~l~~~~~-----------------------~~~------~~l~~~ 725 (818)
..=.||+ -..|-++| |=.=.|+++++ +++.+.+..... .++ ..+.+-
T Consensus 184 ~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL~lRm~~~~~nA~~lA~~ 263 (384)
T d1cs1a_ 184 ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKY 263 (384)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchhHHHHHHHHHHHHHHHHh
Confidence 2235777 57898886 32334446564 444443321100 111 134556
Q ss_pred HHcCCCeeEEE------------------eeeeEEEEEEecCcccCCCchHHHHHHHHHH
Q 003466 726 ISSHRTVQRVV------------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKL 767 (818)
Q Consensus 726 l~~~~~v~~vr------------------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l 767 (818)
|+.||.|..|. |.|.++.+++.... +.+..|.+.|
T Consensus 264 L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~-------~~a~~f~~~L 316 (384)
T d1cs1a_ 264 LQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDE-------QTLRRFLGGL 316 (384)
T ss_dssp HTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCH-------HHHHHHHHTC
T ss_pred cccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchH-------HHHHHHHHhC
Confidence 78889888875 45889999886542 3355555554
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.07 E-value=6.2e-05 Score=83.13 Aligned_cols=292 Identities=13% Similarity=0.085 Sum_probs=157.0
Q ss_pred CCCCHHHHHHHHHhhhhcccccC---CCCCChhHHHHHHHHHhccCCCCCCcEEE-eCChhHHHHHHHHHHHHHhhhccc
Q 003466 415 ATLQIELARDMGYTAARFGHVMF---PENVYEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~~~~~~~~---~~~~~~~~~eLae~L~~~~~~~~l~~v~f-~~SGseA~e~ALklA~r~~t~~~G 490 (818)
|- +|.|.+.+.+-...|..++. ..++-+..-|+...+++++| ++-+-. ...|+.|.-.|+.|| +.+++++|
T Consensus 76 hy-~P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTG---MdvaNaS~yDGatA~aeA~~ma-~r~~~~~~ 150 (471)
T d1wyub1 76 KY-NPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTG---MDAITLEPAAGAHGELTGILII-RAYHEDRG 150 (471)
T ss_dssp CC-CCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHT---CSEEECCCSSHHHHHHHHHHHH-HHHHHHTT
T ss_pred cc-CcchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhC---CCccccccchHHHHHHHHHHHH-HHHhhhcc
Confidence 44 78888887653222222211 11223456688899999998 554432 357999999999999 55655554
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
. ..+..++.....+|..........+.. .+..|..-.
T Consensus 151 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~- 187 (471)
T d1wyub1 151 E------------GRTRRVVLVPDSAHGSNPATASMAGYQ------------------------------VREIPSGPE- 187 (471)
T ss_dssp C------------TTTCCEEEEETTSCTHHHHHHHHTTCE------------------------------EEEECBCTT-
T ss_pred c------------ccccccccCCcccccceeeeeecccce------------------------------eeccccccc-
Confidence 3 233445555565665432222221110 000110000
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
.-.| .+.+... ..++++++++... +.-|+... ..+.+.+++
T Consensus 188 --------~~~~------------------~~~~~~~--------~~~~~a~v~v~~p-~~~g~~e~----~~~~~~~~~ 228 (471)
T d1wyub1 188 --------GEVD------------------LEALKRE--------LGPHVAALMLTNP-NTLGLFER----RILEISRLC 228 (471)
T ss_dssp --------SSBC------------------HHHHHHH--------CSTTEEEEEECSS-CTTSCCCT----THHHHHHHH
T ss_pred --------cccc------------------chhhhhh--------hhccccceeeccC-CCcccccc----hhhhhHHHH
Confidence 0000 0222222 2467888888864 45444332 367889999
Q ss_pred HhcCCcEEEeecc----cCcccCCccchhcccCCCCcEEEec--ccc----cCCccc-cceeecchHHHhhccCCh----
Q 003466 651 QNRKIPVIFDEVF----TGFWRLGVETTADLLGCVPDIACYG--KLL----TGGVIP-LAATLATNAVFDSFVGDS---- 715 (818)
Q Consensus 651 ~~~gilLI~DEV~----TGfGRtG~~~a~e~~gv~PDivtlg--KgL----ggGy~P-lsAvl~~~~i~~~l~~~~---- 715 (818)
+++|.++++|=+. .|+-+.|..+ .|+++.+ +.+ ++| -| +|.+.+++++...+-+.-
T Consensus 229 h~~g~~~~~~~~~~~~~~~l~~p~~~g--------~div~vg~~q~~G~P~~~G-GP~~G~~a~~~~~~R~~PGRiV~~~ 299 (471)
T d1wyub1 229 KEAGVQLYYDGANLNAIMGWARPGDMG--------FDVVHLNLHKTFTVPHGGG-GPGSGPVGVKAHLAPYLPVPLVERG 299 (471)
T ss_dssp HHHTCEEEEEGGGGGGTTTTCCHHHHT--------CSEEECCTTTTTCCCCTTS-CCCCCCEEECGGGGGGCCSCEEEEC
T ss_pred HhccccccccccchhhhhhccccCccc--------ccccccccccccccccccc-cccccceeehhhhhccCCCceecCC
Confidence 9999988887432 2232222222 2555443 433 334 25 567778888776543210
Q ss_pred ---------H-------------------------HHH---------------HHHHHHHHcCCCeeEEEeeeeEEEEEE
Q 003466 716 ---------K-------------------------LWD---------------LELIQQISSHRTVQRVVALGTLCAIEL 746 (818)
Q Consensus 716 ---------~-------------------------~~~---------------~~l~~~l~~~~~v~~vrg~Gl~~~iel 746 (818)
+ ++. .-+.++|+. +.+.-+ -.+.++ -||
T Consensus 300 ~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~-~~~~ff-~EF 376 (471)
T d1wyub1 300 EEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVP-YDGPSM-HEF 376 (471)
T ss_dssp SSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCS-SCSSCC-SCE
T ss_pred CccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceec-cCccee-eEE
Confidence 0 011 012334433 222211 122211 122
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEee------cCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRP------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p------~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+-.. . ....+..+.++|+++|++... ..+.+.++++=.+|++|||+++++|++++++.+
T Consensus 377 vv~~-~---~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~ 441 (471)
T d1wyub1 377 VAQP-P---EGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPK 441 (471)
T ss_dssp EEBC-S---TTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred eecC-C---CCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 1110 0 001255688999999997642 246788999999999999999999999998765
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.03 E-value=9.1e-05 Score=78.74 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=41.3
Q ss_pred HHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHH
Q 003466 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (818)
Q Consensus 422 ~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA 481 (818)
++++.+.+++-... ..-+...++++.+++.++. ..+++++||+.|+..|++.+
T Consensus 4 ~~~~~~~l~~~~~~----~~G~~~~~fE~~~~~~~~~---~~~~~~~SgT~Al~lal~~l 56 (374)
T d1o69a_ 4 LKYIEEVFKSNYIA----PLGEFVNRFEQSVKDYSKS---ENALALNSATAALHLALRVA 56 (374)
T ss_dssp HHHHHHHHHHTTTS----CTTHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcC----CCCHHHHHHHHHHHHHHCc---CeEEEeCCHHHHHHHHHHHc
Confidence 46777777754221 1236788999999999984 68999999999999999976
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=8.7e-05 Score=79.98 Aligned_cols=259 Identities=14% Similarity=0.124 Sum_probs=148.2
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
...+|-...|+++|+++=+. +.++.++||-.|+-+++.... +.| ..||+.+..|-|
T Consensus 54 R~~nPt~~~le~~la~LEg~---~~a~~~~SGMaAi~~~l~~l~-----~~G----------------d~iv~~~~~Yg~ 109 (391)
T d1cl1a_ 54 RRGTLTHFSLQQAMCELEGG---AGCVLFPCGAAAVANSILAFI-----EQG----------------DHVLMTNTAYEP 109 (391)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEETTSCHH
T ss_pred CCCChhHHHHHHHHHHHhCC---ccEEEeccccceeeehhhccc-----CCC----------------CeEEEecccccc
Confidence 45688899999999998763 688889999999999877551 222 257777665544
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
|..-+.-. ....|.. +.|-|. .+
T Consensus 110 -T~~l~~~~-------------l~~~Gi~------------------------------~~~~d~-------~d------ 132 (391)
T d1cl1a_ 110 -SQDFCSKI-------------LSKLGVT------------------------------TSWFDP-------LI------ 132 (391)
T ss_dssp -HHHHHHHT-------------GGGGTCE------------------------------EEEECT-------TC------
T ss_pred -hhhhhhhc-------------ccccccc------------------------------cccccC-------cc------
Confidence 32221110 0001100 001111 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh--cCCcEEEeecccCcccCCccchhc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~--~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
.+.+++.+ .++..+|++|.. .+...-++ + ++++.++|++ +|+++|+|...... ..+.
T Consensus 133 --~~~~~~~i--------~~~t~~i~~Etp-sNP~l~v~-D---i~~i~~~a~~~~~g~~~vVDnT~atP------~~~~ 191 (391)
T d1cl1a_ 133 --GADIVKHL--------QPNTKIVFLESP-GSITMEVH-D---VPAIVAAVRSVVPDAIIMIDNTWAAG------VLFK 191 (391)
T ss_dssp --GGGGGGTC--------CTTEEEEEEESS-CTTTCCCC-C---HHHHHHHHHHHCTTCEEEEECTTTTT------TSSC
T ss_pred --cccccccc--------ccccceeeeccc-Cccccccc-c---cHHHHHHHHhccCCcEEEEeccccch------hhhc
Confidence 01222222 357899999986 45443333 3 7888999976 49999999988432 1222
Q ss_pred ccCCCCcEE--EecccccC-CccccceeecchHHHhhccCChH-----------------------HHH------HHHHH
Q 003466 677 LLGCVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSFVGDSK-----------------------LWD------LELIQ 724 (818)
Q Consensus 677 ~~gv~PDiv--tlgKgLgg-Gy~PlsAvl~~~~i~~~l~~~~~-----------------------~~~------~~l~~ 724 (818)
-+..-.||+ .+.|-++| |=.=.|+++++++..+.+..... .++ ..+.+
T Consensus 192 Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~ 271 (391)
T d1cl1a_ 192 ALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAE 271 (391)
T ss_dssp GGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 222335777 57888886 22334556677766554332111 111 13456
Q ss_pred HHHcCCCeeEEE------------------eeeeEEEEEEecCcccCCCchHHHHHHHHHHH--hCCceEe--------e
Q 003466 725 QISSHRTVQRVV------------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR--EDGVYMR--------P 776 (818)
Q Consensus 725 ~l~~~~~v~~vr------------------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~--e~Gvlv~--------p 776 (818)
-|+.||.|..|. |.|.++++++.... +.+.+..|.+.|. ..|.-.. |
T Consensus 272 ~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~-----~~e~~~~f~d~L~l~~~a~SlG~~~SLi~~~ 346 (391)
T d1cl1a_ 272 WLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELANYLDNFSLFSMAYSWGGYESLILAN 346 (391)
T ss_dssp HHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHHHHTTCSSCBCCSCCCSSSCEEEEE
T ss_pred HHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCC-----CHHHHHHHHHcCCcceEeeCCCCCccceeCC
Confidence 678899988875 55668888886431 1133444544332 2222111 1
Q ss_pred ----------------cCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 777 ----------------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 777 ----------------~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.++.||++.=+ ||++.+++-|+++|+++
T Consensus 347 ~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~~i 390 (391)
T d1cl1a_ 347 QPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFARI 390 (391)
T ss_dssp CHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHHHT
T ss_pred cccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHhh
Confidence 12567777654 67777888888887653
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=97.93 E-value=6.8e-05 Score=81.88 Aligned_cols=167 Identities=14% Similarity=0.046 Sum_probs=98.7
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeec---ccCcccCCccchhcccCCCCcEEE-----ec
Q 003466 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV---FTGFWRLGVETTADLLGCVPDIAC-----YG 688 (818)
Q Consensus 617 ~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV---~TGfGRtG~~~a~e~~gv~PDivt-----lg 688 (818)
.+++|||++..- +.-|.+.. ++++.+++++.|.++|+|=- .+++-+-|.+ | .||++ ||
T Consensus 194 ~~~~Aavmi~~P--nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~------G--aDi~~g~~q~fg 259 (437)
T d1wyua1 194 GEEVGAVVVQNP--NFLGALED----LGPFAEAAHGAGALFVAVADPLSLGVLKPPGAY------G--ADIAVGDGQSLG 259 (437)
T ss_dssp CTTEEEEEEESS--CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHH------T--CSEEEEECTTTT
T ss_pred ccceeEEEEccc--cccccccc----hHHHHHHhhhccceEEeeechhhhhcccccccc------c--cceEeeccceec
Confidence 568999988863 55677642 78999999999998888732 2233223333 2 26662 33
Q ss_pred ccccCCccccceeecchHHHhhccCCh-------------------H-----------------------------HHH-
Q 003466 689 KLLTGGVIPLAATLATNAVFDSFVGDS-------------------K-----------------------------LWD- 719 (818)
Q Consensus 689 KgLggGy~PlsAvl~~~~i~~~l~~~~-------------------~-----------------------------~~~- 719 (818)
=.+|+|--..|.+.+++++...+-..- + .+.
T Consensus 260 ~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~ 339 (437)
T d1wyua1 260 LPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGP 339 (437)
T ss_dssp CCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHH
T ss_pred cccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCc
Confidence 334433123455666777665442210 0 000
Q ss_pred --------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee------cCC
Q 003466 720 --------------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------LGN 779 (818)
Q Consensus 720 --------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p------~g~ 779 (818)
..+.++|.+.+.+..+...-.+--+.+..+ ..+..+.++|.++|++... ..+
T Consensus 340 ~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~--------~~~~~i~k~L~d~G~~~~~~~~~~~~~~ 411 (437)
T d1wyua1 340 EGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP--------KDPEAVRRALAERGFHGATPVPREYGEN 411 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS--------SCHHHHHHHHHHTTCCCCEECCTTSCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECC--------CCHHHHHHHHHhCCCCCCcccccCCCCC
Confidence 113344555544432222222222222211 1256789999999998542 247
Q ss_pred EEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 780 VIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 780 ~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+.+.|.=+.|++|||+++++|++++
T Consensus 412 ~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 412 LALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999998763
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=97.88 E-value=1.3e-05 Score=84.96 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 758 ~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
..+..+.+.|.++||.++.+. ..+|+.....+|.|||++++++|++..++
T Consensus 307 ~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 307 ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 456788899999999987641 24899999899999999999999886543
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=97.86 E-value=2.1e-05 Score=80.03 Aligned_cols=90 Identities=10% Similarity=0.111 Sum_probs=53.8
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCC-H
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVN-E 294 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~N~~~~~~-~ 294 (818)
.+|+++|-..+++... .....++...---+++|+....-++..+...++.++ ..+.++.|+|+|+..... .
T Consensus 115 ~~D~viiD~p~~~~~~----~~~~~~~~~~ad~vliv~~~~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~ 190 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCG----GFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY 190 (269)
T ss_dssp TCSEEEEEEECSSCST----TTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH
T ss_pred cCCEEEeccCCccchh----HHHHHHHhhccCceeeccchhhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCcc
Confidence 4899999986644221 223333333323456677776555555444444443 245789999999984332 3
Q ss_pred HH---HHHhhcCCCCEEe-cCCCCC
Q 003466 295 VP---LMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 295 ~~---l~~~~~~~~pvlg-iP~~~~ 315 (818)
+. +.+.+ +.|+++ ||+.+.
T Consensus 191 ~~~~~~~~~~--~~~~~~~IP~d~~ 213 (269)
T d1cp2a_ 191 ELLDAFAKEL--GSQLIHFVPRSPM 213 (269)
T ss_dssp HHHHHHHHHH--TCCEEEEECCCHH
T ss_pred chhhhhHhhc--CCeEEEEEecCHH
Confidence 33 33444 999999 998644
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=97.85 E-value=4.9e-05 Score=79.85 Aligned_cols=163 Identities=11% Similarity=-0.018 Sum_probs=92.0
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccce
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAA 700 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsA 700 (818)
..+.++.+ . |...+ +..+.++|+++|+++|+|=|++ +| +.-.-++.+| -|+.+++|.++.+ -+.+.
T Consensus 141 ~~~~~~~~-t---g~~~~----~~~i~~~~~~~g~l~ivDavqs-~g--~~~id~~~~~--vd~~~~~~~k~~~-~~~~~ 206 (360)
T d1w23a_ 141 NDAYLHIT-S---NNTIY----GTQYQNFPEINHAPLIADMSSD-IL--SRPLKVNQFG--MIYAGAQKNLGPS-GVTVV 206 (360)
T ss_dssp TEEEEEEE-S---EETTT----TEECSSCCCCCSSCEEEECTTT-TT--SSCCCGGGCS--EEEEETTTTTSCT-TCEEE
T ss_pred ccceeEec-C---Ccccc----ceeeeeccccceeeEEeecccc-cc--cccccccccc--ceEEeeccccccC-Cccee
Confidence 34555654 2 44444 5678899999999999999995 32 1222234444 4889999988754 23333
Q ss_pred eecchHHHhhccCChH---------------------------------------HHHHH-------HHHHHHcCCCe--
Q 003466 701 TLATNAVFDSFVGDSK---------------------------------------LWDLE-------LIQQISSHRTV-- 732 (818)
Q Consensus 701 vl~~~~i~~~l~~~~~---------------------------------------~~~~~-------l~~~l~~~~~v-- 732 (818)
++.++...+....... .+.+. ...........
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (360)
T d1w23a_ 207 IVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYV 286 (360)
T ss_dssp EEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSE
T ss_pred eEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4333333221111100 00000 00111111111
Q ss_pred ----eEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 733 ----QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 733 ----~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
...|..+ .+++.+.+ ......+...|.++||..+.+. ..+|+..-..+|.|||+.+++.+++..
T Consensus 287 ~~~~~~~rS~~-vvsf~i~~--------~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~ 357 (360)
T d1w23a_ 287 GHAEKGSRSLM-NVTFNLRN--------EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp ESSCGGGBCSS-EEEEECSS--------HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCChhhccee-EEEEEcCC--------CccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 1123322 33443322 2456678888999999986531 348888766779999999999988876
Q ss_pred H
Q 003466 806 E 806 (818)
Q Consensus 806 ~ 806 (818)
+
T Consensus 358 ~ 358 (360)
T d1w23a_ 358 E 358 (360)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=97.76 E-value=0.00051 Score=73.85 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=74.1
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHH-hcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC-
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ-NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG- 693 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~-~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg- 693 (818)
++..+|++|.. .+...-++. ++++.++++ ++|+++|+|...+.. ..++-+..-.||+ ...|-++|
T Consensus 143 ~~t~lv~~Etp-~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~atP------~~~~Pl~~GaDiVvhS~TKy~~Gh 211 (394)
T d1e5ea_ 143 PNTKIVYFETP-ANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSP------MITNPVDFGVDVVVHSATKYINGH 211 (394)
T ss_dssp TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCT------TTCCGGGGTCSEEEEETTTTTTCS
T ss_pred ccccEEEEecc-CCcceeeeh----hhhhhhccccccCeEEEecCcccCc------ccCCchhcCCCEEEechhhhcCCC
Confidence 46789999986 454444443 667776565 578999999987422 1122222234777 57798986
Q ss_pred CccccceeecchHHHhhc-----cC--ChH------------------HHH------HHHHHHHHcCCCeeEEE------
Q 003466 694 GVIPLAATLATNAVFDSF-----VG--DSK------------------LWD------LELIQQISSHRTVQRVV------ 736 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l-----~~--~~~------------------~~~------~~l~~~l~~~~~v~~vr------ 736 (818)
|=.-.|+++++++.+... .. +.. .++ ..+.+-|+.||.|..|.
T Consensus 212 sDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s 291 (394)
T d1e5ea_ 212 TDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFED 291 (394)
T ss_dssp SCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSS
T ss_pred cccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCccc
Confidence 324455677777655432 11 110 111 13456678999998886
Q ss_pred ------------eeeeEEEEEEecC
Q 003466 737 ------------ALGTLCAIELQAA 749 (818)
Q Consensus 737 ------------g~Gl~~~iel~~~ 749 (818)
|.|.++.+++...
T Consensus 292 ~p~~~~~~~~~~~~G~~~sf~~~~~ 316 (394)
T d1e5ea_ 292 HEGHDIAKKQMRMYGSMITFILKSG 316 (394)
T ss_dssp STTHHHHHHHCSSCCSEEEEEETTH
T ss_pred ccchhhhhcccccCCCeeeeeccCC
Confidence 4588888887543
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=97.66 E-value=7.5e-05 Score=76.71 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=32.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|+.|.|+| -.||||||+|.-|..+|. ++|++|...=
T Consensus 1 ~Mr~Iaisg-KGGVGKTT~a~NLA~~LA-----~~G~rVLlID 37 (289)
T d2afhe1 1 AMRQCAIYG-KGGIGKSTTTQNLVAALA-----EMGKKVMIVG 37 (289)
T ss_dssp CCEEEEEEE-CTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CccEEEEEC-CCCCCHHHHHHHHHHHHH-----HCCCCEEEEe
Confidence 488899998 689999999999999994 7899998765
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=97.63 E-value=0.00021 Score=75.19 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=79.8
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHH-HhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC-
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG- 693 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc-~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg- 693 (818)
++...|++|.. .+....++. ++.+.+++ +++|+++|+|...++. ..+.-...-.||+ .+.|-++|
T Consensus 82 ~~t~~i~~Es~-~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp------~~~~pl~~GaDiVv~S~TKy~~Gh 150 (331)
T d1pffa_ 82 PNTRIVYFETP-ANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP------ILTNPLDLGVDIVVHSATKYINGH 150 (331)
T ss_dssp TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH------HHCCGGGGTCSEEEEETTTTTSSS
T ss_pred cccceeeeecc-ccccccccc----chhhhhhhhcccCceEEeecccccc------ccccccccCCCEEEecchhhcCCC
Confidence 46789999986 454444443 67777775 6789999999987532 2233333336887 47798886
Q ss_pred CccccceeecchHHHhhc-----cC--ChH------------------HHH------HHHHHHHHcCCCeeEEE------
Q 003466 694 GVIPLAATLATNAVFDSF-----VG--DSK------------------LWD------LELIQQISSHRTVQRVV------ 736 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l-----~~--~~~------------------~~~------~~l~~~l~~~~~v~~vr------ 736 (818)
|=.=.|+++++++.+... .. +.. +++ ..+.+-|+.||.|..|.
T Consensus 151 ~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s 230 (331)
T d1pffa_ 151 TDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPD 230 (331)
T ss_dssp SSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTT
T ss_pred CccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccC
Confidence 333455677775554332 11 110 111 13445677888887774
Q ss_pred ------------eeeeEEEEEEecCcccCCCchHHHHHHHHHH
Q 003466 737 ------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKL 767 (818)
Q Consensus 737 ------------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l 767 (818)
+.|.++++++... +.+.+|.+.|
T Consensus 231 ~p~~~~~~~~~~~~g~l~sf~l~~~--------~~~~~f~d~l 265 (331)
T d1pffa_ 231 HPGHEIAKKQMKMFGSMIAFDVDGL--------EKAKKVLDNC 265 (331)
T ss_dssp STTHHHHHHHCSSCCSEEEEECSSH--------HHHHHHHHTC
T ss_pred ccHHHHHhhcccccCcccceeeccH--------HHHHHHHHhC
Confidence 5688999998643 3455555554
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=0.0025 Score=68.30 Aligned_cols=83 Identities=13% Similarity=0.233 Sum_probs=51.4
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHH----hcCCcEEEeecccCcccCCccchhcccCCCCcEE--Eecccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ----NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLL 691 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~----~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgL 691 (818)
++..+|++|.. .+.. ..+++ ++++.++|+ ++|+++|+|....+ ...++-+..=.||+ .+.|-+
T Consensus 137 ~~t~lv~~Esp-sNP~-l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~at------P~~~~Pl~~GADiVvhS~TKyi 205 (393)
T d1n8pa_ 137 ENTKLVWIETP-TNPT-LKVTD---IQKVADLIKKHAAGQDVILVVDNTFLS------PYISNPLNFGADIVVHSATKYI 205 (393)
T ss_dssp SSEEEEEECSS-CTTT-CCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTH------HHHCCGGGGTCSEEEEETTTTT
T ss_pred hhcceeEecCc-chhh-hhccc---hhhhhhhhhhhcccCCceEEEecCccC------cccCCchhhCCCEEEEcccccc
Confidence 57889999986 4444 34444 677777777 78999999998732 12222222235877 577988
Q ss_pred cC-Cccccceeec-chHHHhhc
Q 003466 692 TG-GVIPLAATLA-TNAVFDSF 711 (818)
Q Consensus 692 gg-Gy~PlsAvl~-~~~i~~~l 711 (818)
+| |=.=.|+++. ++++.+.+
T Consensus 206 ~GhsDv~~G~v~~~~~~~~~~l 227 (393)
T d1n8pa_ 206 NGHSDVVLGVLATNNKPLYERL 227 (393)
T ss_dssp TCSSCCCCEEEEESCHHHHHHH
T ss_pred CCCCccccceeeecchhHHHHH
Confidence 86 2122344444 45565544
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=97.46 E-value=0.00099 Score=72.05 Aligned_cols=166 Identities=15% Similarity=0.096 Sum_probs=100.5
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
...+|-...|+++|+++=+. +.++.++||-.|+-+++... -+.| ..||+.+..|+|
T Consensus 54 R~~nPT~~~LE~~la~LE~~---~~a~~~~SGmaAi~~~~~~l-----~~~g----------------d~il~~~~~Yg~ 109 (421)
T d2ctza1 54 RIMNPTVDVLEKRLAALEGG---KAALATASGHAAQFLALTTL-----AQAG----------------DNIVSTPNLYGG 109 (421)
T ss_dssp TTBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-----CCTT----------------CEEEECSCCCHH
T ss_pred CCCCHHHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHhh-----cccc----------------cceeecCCcCCc
Confidence 45688899999999998763 67888899999988887654 1222 379999999988
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.....-. +....+.. ++|-|. .+.
T Consensus 110 t~~l~~~--------------~~~~~gi~------------------------------~~~~d~-------~~~----- 133 (421)
T d2ctza1 110 TFNQFKV--------------TLKRLGIE------------------------------VRFTSR-------EER----- 133 (421)
T ss_dssp HHHHHHT--------------HHHHTTCE------------------------------EEECCT-------TCC-----
T ss_pred hhHHHHH--------------HHhhcccc------------------------------ceeccc-------ccC-----
Confidence 4311100 00001100 001111 000
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+..+..+ .+++.+|++|.. .+...-++. ++.|.++|+++|+++|+|..... + ...++-+
T Consensus 134 --~~~~~~~~--------~~~t~li~~Etp-sNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a~----t-P~~~~Pl 193 (421)
T d2ctza1 134 --PEEFLALT--------DEKTRAWWVESI-GNPALNIPD----LEALAQAAREKGVALIVDNTFGM----G-GYLLRPL 193 (421)
T ss_dssp --HHHHHHHC--------CTTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG----G-GTSCCGG
T ss_pred --cchhcccc--------CCCceEEEEcCC-CcceeEecc----hHHHHHHHHhcCCceEecccccc----c-ceecccc
Confidence 02222223 357899999996 565544444 99999999999999999998731 0 1112223
Q ss_pred CCCCcEE--EecccccC-Cccccceeecc
Q 003466 679 GCVPDIA--CYGKLLTG-GVIPLAATLAT 704 (818)
Q Consensus 679 gv~PDiv--tlgKgLgg-Gy~PlsAvl~~ 704 (818)
..-.||+ -+.|=++| |=.=.|+|+.+
T Consensus 194 ~~GaDiVvhS~TKyl~GHsD~l~G~vv~~ 222 (421)
T d2ctza1 194 AWGAALVTHSLTKWVGGHGAVIAGAIVDG 222 (421)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred ccCCcEEEEechhhccCCCCeEEEEEEcC
Confidence 3336877 47898886 32334445543
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.0014 Score=67.80 Aligned_cols=48 Identities=8% Similarity=-0.159 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 759 ~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
....+...|.++||.+..+. ..+|+..-..+|+|||++++++|++..+
T Consensus 307 ~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 307 LDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp GHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 35678888999999887642 2489998888999999999999987554
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=0.00026 Score=72.14 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=34.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003466 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (818)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (818)
.++||+....-++..+.-.++.++..|+++.|+|+|++
T Consensus 200 ~~~lVt~pe~~~~~~~~r~~~~l~~~gi~~~~vVvN~v 237 (296)
T d1ihua1 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGV 237 (296)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEE
T ss_pred eeeEecCcchhHHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 47899988888899999999999999999999999997
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0058 Score=65.33 Aligned_cols=152 Identities=9% Similarity=0.047 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCCCCcEE--EecccccCCccccceeec-c---hHHHhhcc---
Q 003466 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLA-T---NAVFDSFV--- 712 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~-~---~~i~~~l~--- 712 (818)
+++++++|++.|++|++|-.|. |+ -.|..+- .-+.. .|++ |+-|.|.| |-|+++. + +++++.+.
T Consensus 182 ~~~~reiad~vga~l~~D~aH~~GL-Ia~g~~~-sP~~~-aDvvt~tThKtlrG---PrggiI~~~~~~~~~~~~i~~av 255 (416)
T d1dfoa_ 182 WAKMREIADSIGAYLFVDMAHVAGL-VAAGVYP-NPVPH-AHVVTTTTHKTLAG---PRGGLILAKGGSEELYKKLNSAV 255 (416)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTHHH-HHHTSSC-CCTTT-SSEEEEESSSTTCC---CSCEEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEcchhhhhcc-eeccccC-Ccccc-cceeeeehhhcccC---CCceEEEeccchHhHHHHHHhhh
Confidence 8999999999999999999986 44 2222111 11222 4877 68899987 3444444 3 45544331
Q ss_pred -CCh----H--------------------HH-------HHHHHHHHHcCCCeeEEEe--eeeEEEEEEecCcccCCCchH
Q 003466 713 -GDS----K--------------------LW-------DLELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAGYGSL 758 (818)
Q Consensus 713 -~~~----~--------------------~~-------~~~l~~~l~~~~~v~~vrg--~Gl~~~iel~~~~~~~~~~~~ 758 (818)
++. . .+ .+.+.+.|.+.+.- -+.| ...++-+++.+.. .
T Consensus 256 fPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~-iv~ggTdnHlvlvdl~~~~-------~ 327 (416)
T d1dfoa_ 256 FPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYK-VVSGGTDNHLFLVDLVDKN-------L 327 (416)
T ss_dssp TTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCE-EGGGSCSSSEEEEECGGGT-------C
T ss_pred CcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcc-cccCCCCCceeEEEecccC-------C
Confidence 111 0 00 02244455555431 1111 1235556664331 1
Q ss_pred HHHHHHHHHHhCCceEee----c-------CCEEEEECCCC----ChHHHHHHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLREDGVYMRP----L-------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 759 ~a~~~~~~l~e~Gvlv~p----~-------g~~ir~~ppl~----~t~edId~~~~~l~~~l~~l 808 (818)
.+..+.+.|.+-||.+.- . ...||+-.|.. +.++|++++.+.|.++++..
T Consensus 328 ~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~ 392 (416)
T d1dfoa_ 328 TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSI 392 (416)
T ss_dssp CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 245566677788999862 1 25689988774 56899999999999988653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.95 E-value=0.022 Score=55.32 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+++.|. |||||||..+-|++.+. ++|++|+..-
T Consensus 5 ~~~vi~lvGp-tGvGKTTTiaKLA~~~~-----~~g~kV~lit 41 (207)
T d1okkd2 5 KGRVVLVVGV-NGVGKTTTIAKLGRYYQ-----NLGKKVMFCA 41 (207)
T ss_dssp SSSEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 3457888998 99999999999999884 7788887543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.93 E-value=0.0079 Score=58.70 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=48.1
Q ss_pred CCCEEEEeCCCCCCCcCCCCCc-hhhH---hhhCC-CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CCC
Q 003466 220 MEILCIVETAGGVASPGPSGSL-QCDL---YRPFR-LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVN 293 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~-~~dl---a~~l~-~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~~ 293 (818)
.+|+++|-+|| .+|..+... .-++ ....+ ..++||.+...|. ++........+ ...+.|+|+.+++ ...
T Consensus 94 ~~d~IlIDTaG--r~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~-~~~~~~~~~~~--~~~~~~lI~TKlDet~~ 168 (211)
T d1j8yf2 94 KMEIIIVDTAG--RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ-KAYDLASKFNQ--ASKIGTIIITKMDGTAK 168 (211)
T ss_dssp TCSEEEEECCC--SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG-GHHHHHHHHHH--HCTTEEEEEECTTSCSC
T ss_pred CCceEEEecCC--cCccchhhHHHHHHHHHHhhcCCceEEEEEecccCc-chHHHHhhhhc--ccCcceEEEecccCCCc
Confidence 38999999999 355433211 1222 22222 3578998876653 22222222232 2457899999994 334
Q ss_pred HHHHHHhhcC-CCCEEecC
Q 003466 294 EVPLMSYLRN-RVPVLVLP 311 (818)
Q Consensus 294 ~~~l~~~~~~-~~pvlgiP 311 (818)
.-.+-+.... ++|+..+-
T Consensus 169 ~G~~l~~~~~~~lPi~~it 187 (211)
T d1j8yf2 169 GGGALSAVAATGATIKFIG 187 (211)
T ss_dssp HHHHHHHHHTTTCCEEEEE
T ss_pred ccHHHHHHHHHCcCEEEEe
Confidence 4444443322 89976643
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.87 E-value=0.003 Score=61.71 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=28.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
.+.+++.|. +||||||.++-|+..+. ++|++|+..
T Consensus 10 ~~vi~lvGp-~GvGKTTTiaKLA~~~~-----~~g~kV~li 44 (207)
T d1ls1a2 10 RNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLV 44 (207)
T ss_dssp SEEEEEECC-TTTTHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEE
Confidence 445777888 99999999999999994 678888743
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.014 Score=56.97 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=28.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+++.|. |||||||..+-|+..++ ++|++|...-
T Consensus 11 vi~lvGp-tGvGKTTTiAKLA~~~~-----~~g~kV~lit 44 (211)
T d2qy9a2 11 VILMVGV-NGVGKTTTIGKLARQFE-----QQGKSVMLAA 44 (211)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 4778888 99999999999999884 7788877665
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.46 E-value=0.021 Score=55.58 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=28.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+++.|. +||||||..+-|+..+. ++|++|+..-
T Consensus 13 vi~lvGp-tGvGKTTTiAKLAa~~~-----~~~~kV~lit 46 (213)
T d1vmaa2 13 VIMVVGV-NGTGKTTSCGKLAKMFV-----DEGKSVVLAA 46 (213)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCceEEEe
Confidence 5778888 89999999999999984 6788887765
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=96.26 E-value=0.013 Score=63.22 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=32.8
Q ss_pred HHHHHHhCCceEeec------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
..+.|.++||+++|+ ++-+|++. ..++|++++++++|++.++
T Consensus 376 ~~~lL~e~gI~v~pGs~FG~~~~yvRisl--~~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 376 CYQTFQNGRINTQNGVGFEASSRYVRLSL--IKTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp HHHHHHHTTEECEEGGGGTSCTTEEEEEC--SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEechhcCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 345677999999972 25777764 5678999999999998875
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.46 E-value=0.13 Score=54.43 Aligned_cols=152 Identities=12% Similarity=0.044 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccCC-----
Q 003466 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD----- 714 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~----- 714 (818)
+++++++|++.|++|++|=.|. |+ --|..+- .-+. ..|++ +.=|.|.|- .-|.+++++++.+.+...
T Consensus 180 ~~~~reIad~vga~l~~D~aH~~GL-Ia~g~~~-~P~~-~aDvvt~tThKtlrGP--rgg~I~~~~~~~~~i~~avfPg~ 254 (405)
T d1kl1a_ 180 FAKFREIADEVGAYLMVDMAHIAGL-VAAGLHP-NPVP-YAHFVTTTTHKTLRGP--RGGMILCQEQFAKQIDKAIFPGI 254 (405)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHH-HHTTSSC-CSTT-TCSEEEEESSSTTCCC--SCEEEEECHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHhhhCCEEecchhhHhhh-hhhhhcC-Chhh-hhhheeccccccccCC--CCceEEecchhHHHHHhhhCccc
Confidence 8999999999999999998875 44 2222221 1122 25877 567999872 334466777766543211
Q ss_pred ---hH---------HH------------------HHHHHHHHHcCCCeeEEEe--eeeEEEEEEecCcccCCCchHHHHH
Q 003466 715 ---SK---------LW------------------DLELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 715 ---~~---------~~------------------~~~l~~~l~~~~~v~~vrg--~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
.+ .+ .+.+.+.|.+.+. .-+.| .-.++-+++.+.. .....
T Consensus 255 qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~-~vv~ggTd~H~vlvdl~~~~-------~~g~~ 326 (405)
T d1kl1a_ 255 QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF-TLVSGGTDNHLLLVDLRPQQ-------LTGKT 326 (405)
T ss_dssp CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC-EEGGGSCSSSEEEEECGGGT-------CCHHH
T ss_pred ccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCc-eeecCCCccceeeccccccC-------CcHHH
Confidence 00 00 0123344555543 11122 2235555554321 11344
Q ss_pred HHHHHHhCCceEee----c-------CCEEEEECCCC----ChHHHHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRP----L-------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p----~-------g~~ir~~ppl~----~t~edId~~~~~l~~~l~~ 807 (818)
..+.|-+.||++.- . .+.||+-.|.. +.++|+.++.+.|.++++.
T Consensus 327 ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 327 AEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp HHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 45567777999972 1 25799988774 5689999999999999854
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.44 E-value=0.091 Score=54.18 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=30.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..|=|||+ .|+||||+...|++.+. .+|.+|+..-
T Consensus 52 ~~igitG~-pGaGKSTli~~l~~~~~-----~~g~~vaVia 86 (323)
T d2qm8a1 52 IRVGITGV-PGVGKSTTIDALGSLLT-----AAGHKVAVLA 86 (323)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEeeeCC-CCCCHHHHHHHHHHHHh-----hcCCceeeee
Confidence 46889998 89999999999999984 6788888776
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0062 Score=55.73 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=34.3
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
|.|.+.|+|. +|+||||++..|++.|. ++|++|+..|.
T Consensus 1 m~Pvi~itG~-~GSGKTTL~~~L~~~l~-----~~g~~v~v~~~ 38 (170)
T d1np6a_ 1 MIPLLAFAAW-SGTGKTTLLKKLIPALC-----ARGIRPGLIKH 38 (170)
T ss_dssp CCCEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEE
T ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHHH-----HCCCeEEEecc
Confidence 4678999999 69999999999999994 88999999995
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.30 E-value=0.28 Score=52.71 Aligned_cols=153 Identities=11% Similarity=-0.019 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCCCCcEE--EecccccCCccccceee-cchH------------
Q 003466 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATL-ATNA------------ 706 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl-~~~~------------ 706 (818)
+++++++|++.|++|++|=.|. |+ -.|..+- .-+. ..|++ +.=|.|.| |-|+++ ++++
T Consensus 197 ~~~~reIad~vga~l~~D~aH~aGL-IA~g~~~-sPl~-~aDvvt~tTHKtlrG---PrgGiI~~~~~~~~~~~~~~~~~ 270 (470)
T d1rv3a_ 197 YGRLRKIADENGAYLMADMAHISGL-VVAGVVP-SPFE-HCHVVTTTTHKTLRG---CRAGMIFYRRGVRSVDPKTGKEI 270 (470)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTHHH-HHHTSSC-CGGG-TCSEEEEESSGGGCC---CSCEEEEEECSBCC-------CC
T ss_pred HHHHHHHHhccCCeEEecchhhhhh-ccccccC-Chhh-eeeeeeeehhhhccC---CcceEEEEccccccccccccchh
Confidence 8999999999999999998886 44 2222221 1122 24887 56789887 444444 4332
Q ss_pred ---HHhhc----cC----ChH--------------------HH-------HHHHHHHHHcCCCeeEEEe--eeeEEEEEE
Q 003466 707 ---VFDSF----VG----DSK--------------------LW-------DLELIQQISSHRTVQRVVA--LGTLCAIEL 746 (818)
Q Consensus 707 ---i~~~l----~~----~~~--------------------~~-------~~~l~~~l~~~~~v~~vrg--~Gl~~~iel 746 (818)
+.+.+ .+ +.+ .+ .+.+.+.|.+.+.- -+.| ...++-+++
T Consensus 271 ~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~-v~~ggTdnHlvlvdl 349 (470)
T d1rv3a_ 271 LYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYK-IVTGGSDNHLILVDL 349 (470)
T ss_dssp BCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCE-EGGGSCSSSEEEEEG
T ss_pred HHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCce-eccCCCCCceEEEee
Confidence 22211 11 111 00 01234445555431 1111 123455555
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEee----c------CCEEEEECCCC----ChHHHHHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRP----L------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~------g~~ir~~ppl~----~t~edId~~~~~l~~~l~~l~ 809 (818)
...+ .....+.+.|.+.||.+.- . ...||+-.|.. +.++|+.++.+.|.++++...
T Consensus 350 ~~~g-------~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~~~~ 419 (470)
T d1rv3a_ 350 RSKG-------TDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTV 419 (470)
T ss_dssp GGGT-------CCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccC-------CcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3321 1144556667788999873 1 25689987764 578999999999999986543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.09 Score=54.33 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
...|-|||. .|+||||+.-.|++.+. .+|++|+..-
T Consensus 54 ~~~IgitG~-pGaGKSTLi~~l~~~~~-----~~g~~vavla 89 (327)
T d2p67a1 54 TLRLGVTGT-PGAGKSTFLEAFGMLLI-----REGLKVAVIA 89 (327)
T ss_dssp SEEEEEEEC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEeeCC-CCCCHHHHHHHHHHHHH-----hcCCceeeec
Confidence 446899998 99999999999999994 7898887765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.03 E-value=0.0085 Score=55.37 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=33.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|+.+-|+|. +|+||||+...|++.|. ++|.+|+..|
T Consensus 1 Mkii~I~G~-~gSGKTTli~~l~~~L~-----~~g~~v~vik 36 (165)
T d1xjca_ 1 MNVWQVVGY-KHSGKTTLMEKWVAAAV-----REGWRVGTVK 36 (165)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CcEEEEEeC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 788889997 69999999999999994 8999999999
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=94.29 E-value=0.51 Score=50.45 Aligned_cols=151 Identities=12% Similarity=0.076 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCCCCcEE--EecccccCCccccceeec-ch-------------
Q 003466 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLA-TN------------- 705 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~-~~------------- 705 (818)
++++|++|++.|++|++|=.|. |+ --|..+- .-+.. .|++ +.=|.|.| |-|+++. ++
T Consensus 193 ~~~~reIad~vga~l~~D~aH~aGL-IA~g~~~-sP~~~-aDvvt~tTHKTlrG---PrgGiIl~~~~~~~~~~~~~~~~ 266 (463)
T d2a7va1 193 YARMREVCDEVKAHLLADMAHISGL-VAAKVIP-SPFKH-ADIVTTTTHKTLRG---ARSGLIFYRKGVKAVDPKTGREI 266 (463)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGHHH-HHTTSSC-CGGGT-CSEEEEESSGGGCS---CSCEEEEEECSEEEEETTTEEEE
T ss_pred HHHHHHHhhcccceEEechhhhhHH-hhhhhhc-Chhhh-hhhhhchhhhhhcC---CCceEEEEcccccccccccCccc
Confidence 8999999999999999998886 55 2222221 11222 4887 46788887 4444444 43
Q ss_pred --HHH----hhccCC----hH---------H-----------HH-------HHHHHHHHcCCCeeEEEeee---eEEEEE
Q 003466 706 --AVF----DSFVGD----SK---------L-----------WD-------LELIQQISSHRTVQRVVALG---TLCAIE 745 (818)
Q Consensus 706 --~i~----~~l~~~----~~---------~-----------~~-------~~l~~~l~~~~~v~~vrg~G---l~~~ie 745 (818)
++. ..+.++ .. . +. +.|.+.|.+.+.- +-.-| .++-++
T Consensus 267 ~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~--vv~ggTdnHlvlvd 344 (463)
T d2a7va1 267 PYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS--LVSGGTDNHLVLVD 344 (463)
T ss_dssp ECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE--EGGGSCSSSEEEEE
T ss_pred hhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCe--eecCCCCCceeeee
Confidence 111 111111 11 0 00 1233445444431 11112 244455
Q ss_pred EecCcccCCCchHHHHHHHHHHHhCCceEeec----------CCEEEEECCCC----ChHHHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----------g~~ir~~ppl~----~t~edId~~~~~l~~~l~~l 808 (818)
+.+.. .......+.|-+.||.+.-. ...||+-.|.. +.++|+.++.+.|.+++...
T Consensus 345 l~~~~-------~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~~~ 414 (463)
T d2a7va1 345 LRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 414 (463)
T ss_dssp CTTTT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccC-------CCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 53321 12455667788899999731 24689987764 56899999999999988643
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.023 Score=50.78 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+|.|+++|+ +|+|||||+..|++.|
T Consensus 2 ~k~I~l~G~-~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 2 KRNIFLVGP-MGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCCEEEECC-TTSCHHHHHHHHHHHT
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHh
Confidence 467999999 8999999999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.81 E-value=0.041 Score=50.74 Aligned_cols=37 Identities=11% Similarity=-0.028 Sum_probs=31.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
||-+.|+|+. |+||||++..|.+.|. .+|.++..+++
T Consensus 1 mkiivi~G~~-GsGKTT~~~~La~~L~-----~~~~~~~~~~~ 37 (194)
T d1nksa_ 1 MKIGIVTGIP-GVGKSTVLAKVKEILD-----NQGINNKIINY 37 (194)
T ss_dssp CEEEEEEECT-TSCHHHHHHHHHHHHH-----TTTCCEEEEEH
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHHH-----HcCCCEEEEEC
Confidence 7788999995 9999999999999994 67888877763
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.54 E-value=0.11 Score=52.57 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.++-|-|+|- ||+||||++..|...|. +.|.+++..-
T Consensus 3 k~pIIgIaG~-SGSGKTTva~~l~~i~~-----~~~v~~~iI~ 39 (288)
T d1a7ja_ 3 KHPIISVTGS-SGAGTSTVKHTFDQIFR-----REGVKAVSIE 39 (288)
T ss_dssp TSCEEEEESC-C---CCTHHHHHHHHHH-----HHTCCEEEEE
T ss_pred CCCEEEEECC-CCCcHHHHHHHHHHHHh-----hcCCCeEEEe
Confidence 3556778885 99999999999999994 6677765543
|
| >d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.20 E-value=0.27 Score=48.57 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=33.3
Q ss_pred CCeEEEEe-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~g-t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+|-+|||| .-||.||=.+++.|.+.|+ .+|++|...|
T Consensus 2 ~kyifvtGGV~S~lGKGi~~asig~ll~-----~~g~~v~~~K 39 (272)
T d1vcoa2 2 RKYVFITGGVVSSLGKGILTSSLGALLR-----ARGYRVTAIK 39 (272)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ceEEEEeCCcccccccHHHHHHHHHHHH-----hCCCceeEEe
Confidence 56688887 7899999999999999994 8999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.43 E-value=0.064 Score=48.68 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=26.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|+++|. +|+|||||+..|.+.|. .++....++.
T Consensus 8 ~I~l~G~-~GsGKTTia~~La~~L~-----~~~~~~~~~~ 41 (183)
T d1m8pa3 8 TIFLTGY-MNSGKDAIARALQVTLN-----QQGGRSVSLL 41 (183)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HHCSSCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hcCCCchhhh
Confidence 4889999 89999999999999994 4455544443
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.069 Score=48.55 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=29.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|.++|+|. .|+||||++..+++.|. .+|.+|.++-
T Consensus 2 k~v~ItG~-~GtGKTtl~~~i~~~l~-----~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGP-PGVGKTTLIHKASEVLK-----SSGVPVDGFY 36 (189)
T ss_dssp CCEEEESC-CSSCHHHHHHHHHHHHH-----HTTCCCEEEE
T ss_pred cEEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 56999998 89999999999999995 6677776553
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=90.36 E-value=0.44 Score=46.80 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=29.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.+-.+|+|||++++-|+..+. . +.|.+|.+|-
T Consensus 36 ~l~vi~G~~G~GKT~~~~~la~~~a---~-~~g~~v~~~s 71 (277)
T d1cr2a_ 36 EVIMVTSGSGMGKSTFVRQQALQWG---T-AMGKKVGLAM 71 (277)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH---H-TSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhhh---h-hcccceeEee
Confidence 3788888899999999999986432 2 6799999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.35 E-value=0.097 Score=47.28 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
++.|+|+|. +|+||||++..|++.|
T Consensus 4 ~~~I~i~G~-pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 4 LPNILLTGT-PGVGKTTLGKELASKS 28 (173)
T ss_dssp CCCEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHH
Confidence 456899999 6999999999999998
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.26 E-value=0.089 Score=52.18 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=33.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003466 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (818)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (818)
-+++|+....-++..+...++.+...+.++.|+|+|++
T Consensus 185 ~~vlV~~p~~~~~~~~~r~~~~l~~~~~~~~~iV~N~~ 222 (279)
T d1ihua2 185 KVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNS 222 (279)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred cceEeccccHhHHHHHHHHHHHHHhcCCCccEEEEcCC
Confidence 37888888877888888899999999999999999986
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.90 E-value=0.073 Score=47.94 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+-|+|+|. +|+||||++..|.+.+
T Consensus 2 ~klI~i~G~-~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 2 KKLYIITGP-AGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHc
Confidence 455788887 9999999999999998
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.77 E-value=0.12 Score=47.06 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=28.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|-|+|+|+ .|+||||++..|.+.|. .++.++..+.
T Consensus 2 kiI~i~G~-~GsGKsT~~~~L~~~l~-----~~~~~~~~~~ 36 (190)
T d1khta_ 2 KVVVVTGV-PGVGSTTSSQLAMDNLR-----KEGVNYKMVS 36 (190)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCCEEEE
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCeEEEe
Confidence 56899998 89999999999999994 6677766543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.47 E-value=0.08 Score=48.14 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.5
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+|.|.|+|+ +|+||||++..|...|
T Consensus 6 ~~K~I~i~G~-~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 6 FAKTVAILGG-ESSGKSVLVNKLAAVF 31 (192)
T ss_dssp TCEEEEEECC-TTSHHHHHHHHHHHHT
T ss_pred cceEEEEECC-CCCCHHHHHHHHHHHh
Confidence 3678999999 5999999999999998
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=89.33 E-value=0.12 Score=46.73 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+-|+|+|. +|+||||++..|++.|
T Consensus 3 ~kiI~l~G~-~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGG-SSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHS
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHc
Confidence 456888888 9999999999999999
|
| >d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.96 E-value=0.9 Score=44.56 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=33.2
Q ss_pred CCeEEEEe-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~g-t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+|-+|||| .-||.||=.+++.|.+.| + .+|++|...|
T Consensus 3 tkyifvtGGV~S~lGKGi~~aSig~ll----k-~~g~~V~~~K 40 (266)
T d1s1ma2 3 TNYIFVTGGVVSSLGKGIAAASLAAIL----E-ARGLNVTIMK 40 (266)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHH----H-TTTCCEEEEE
T ss_pred ceEEEEeCCcccccchHHHHHHHHHHH----H-hCCceeEEEe
Confidence 45688887 789999999999999999 4 8999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=88.71 E-value=0.15 Score=46.67 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|.+.|+++|. +|+||||++..|++.|
T Consensus 1 M~~~Iil~G~-~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 1 MTEPIFMVGA-RGCGMTTVGRELARAL 26 (170)
T ss_dssp CCCCEEEESC-TTSSHHHHHHHHHHHH
T ss_pred CCCCEEEECC-CCCCHHHHHHHHHHHh
Confidence 3567899999 9999999999999999
|
| >d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.65 E-value=0.56 Score=46.23 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=33.8
Q ss_pred CCeEEEEe-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~g-t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
||-+|||| .-||.||=.+++.|.+.| + ++|++|...|
T Consensus 1 mKyifVtGGV~S~lGKGi~~aSig~ll----~-~~g~~V~~~K 38 (273)
T d2vo1a1 1 MKYILVTGGVISGIGKGIIASSVGTIL----K-SCGLHVTSIK 38 (273)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHH----H-HTTCCEEEEE
T ss_pred CeEEEEeCCcccccchHHHHHHHHHHH----H-hCCceeEEEe
Confidence 67789998 889999999999999999 4 8999999999
|
| >d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein TM0796 species: Thermotoga maritima [TaxId: 2336]
Probab=84.31 E-value=1.1 Score=45.66 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+.+.+.+.||+..+||=|.++.|.++|+ ++|+++.+.=
T Consensus 156 ~~~rvl~vGTDca~GK~tTal~l~~~l~-----~~G~~a~fia 193 (338)
T d2g0ta1 156 KIKVVGVFGTDCVVGKRTTAVQLWERAL-----EKGIKAGFLA 193 (338)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCcEEEEeccCccccHHHHHHHHHHHHH-----hCCCCeeEEE
Confidence 3578999999999999999999999994 8899987754
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.19 E-value=0.23 Score=45.78 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~ 63 (818)
.||++|. +|+||||++..|.+.|.
T Consensus 21 vI~L~G~-pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 21 TVWLTGL-SGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH
Confidence 5889999 69999999999999993
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=82.95 E-value=0.42 Score=43.28 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=22.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|.|+|+|. +|+||||++..|.+.|
T Consensus 1 k~I~liG~-~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 1 KNIVFIGF-MGSGKSTLARALAKDL 24 (161)
T ss_dssp CCEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHh
Confidence 46889997 9999999999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.89 E-value=0.53 Score=42.58 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|.+.++|. +||||||++..|...|
T Consensus 2 p~IvliG~-~G~GKSTig~~La~~l 25 (165)
T d2iyva1 2 PKAVLVGL-PGSGKSTIGRRLAKAL 25 (165)
T ss_dssp CSEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHh
Confidence 45778898 9999999999999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.17 E-value=0.6 Score=44.65 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+||+|. +|+|||.+..+++..+. +++.++.|+-
T Consensus 36 ~n~l~l~G~-~G~GKTHLl~A~~~~~~-----~~~~~~~~~~ 71 (213)
T d1l8qa2 36 YNPIFIYGS-VGTGKTHLLQAAGNEAK-----KRGYRVIYSS 71 (213)
T ss_dssp CSSEEEECS-SSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCcEEEECC-CCCcHHHHHHHHHHHhc-----cCccceEEec
Confidence 345899998 99999999999999994 7788887775
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=81.00 E-value=0.47 Score=42.55 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=21.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+-|+|+|. +|+||||++..|.+.|
T Consensus 6 ~~iivl~G~-~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 6 HHIYVLMGV-SGSGKSAVASEVAHQL 30 (171)
T ss_dssp SEEEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 345667777 8999999999999998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=80.88 E-value=0.56 Score=42.02 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. +|+||||++..|.+.|
T Consensus 7 ~I~i~G~-~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 7 NILITGT-PGTGKTSMAEMIAAEL 29 (174)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHS
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHh
Confidence 4999998 9999999999999988
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.50 E-value=0.6 Score=43.30 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=26.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|+++|. +|+||||++..|++.+. ..|.++..+-
T Consensus 5 i~l~Gl-pgsGKSTla~~L~~~l~-----~~~~~~~~~~ 37 (213)
T d1bifa1 5 IVMVGL-PARGKTYISKKLTRYLN-----FIGVPTREFN 37 (213)
T ss_dssp EEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hcCCCCeEEc
Confidence 677777 99999999999999994 5677766554
|