Citrus Sinensis ID: 003487

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810------
Protein Sequence
MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHccHHHHHHHHHcHHHHHccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccHHcccHEEEccccccccccccccEcccccccccccccccEEccccccccccEEccccccccccccccccccccccccccccEccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHcccHHHcccccccccHcccccHHHHccHHHccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
masaqvlptsrkqEHLEAGKRKLEEFRKKKAAERAkkassvsqpqasdfslhdqhhleadrvrvtdldgagtsdgpdkavvslplvmhnddnKALKLAQQSQqvslsdkrinsncfendlnssSAYLAQTYsnnqetsgsagpvnvsnsqetkdvnndFVIYssgqgrlrdgimsnqflsllpeasqdydssnssksgfqgieesqskgndsfpkvptlvnsgpshdfvtkispqnsvstlfqskpsnaialgnghsfhsssegtahlttstggsasevglntpsttnfsdpvsfntgegkpsnsasglaslqstpfkrseysgynfdagnsfnhvpvssatnkftlgkSRASfldslnvprassgtlfeqteperdsfmsssslnsmdvlgsspaqnpsmekettgafsktttsnipsafdylgnptvstsdrgdirrlgsnessienqhgfystkhnEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAenssltdsynQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRkasgsgksidfgktaastvnaststedlaitdttldnsnqdthddaslpridasgstllpesgrLALEGlavniphdqmRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNManenisfrqpdsasthdhtayadegDEVVERVLGWIMKlfpggpsrrrtskll
Flexible Loop (DISEMBL)
masaqvlptsrkqehleagkrKLEEFRKKKAAerakkassvsqpqasdfslHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSnsqetkdvnnDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESqskgndsfpkVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFldslnvprassgtlfeqteperDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAaenssltdsynqQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASevigleekalrlrsnelklerqlensqseisSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRkasgsgksidfgktaastvnaststedLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWImklfpggpsrrrtskll
Low Complexity Region (SEG)
MASAQVLPTSRKQEHLEAGkrkleefrkkkaaerakkaSSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAsqdydssnssksGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERdsfmsssslnsmdvlgssPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQrsleasralseslaaensslTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENsqseissykkkisslekeRQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKtaastvnaststEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Disordered region (IsUnstruct)
*************************************************************************************************************************************************************DFVIYSS************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE***************************************************************************************************************************LALEGLAVNIPHDQMRMIHNINALISELALEK*******************************************************************GDEVVERVLGWIMKLF*************
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VVERVLGWIM****************
Disordered Region (DISEMBL)
******************GKRKLEEF*************************HDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKL***********KRINSNCFENDLNSSSAYLAQTYS**************SNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEA**************************SFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFN*****************STPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFE**************LNSM**********************KTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE****************************STIEALQEE****************SIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFR***********AYADEGDEVVERVLGWIMKLFPGG**********
Disordered Region (DISPRO)
******************GKRKLEEFRKKKAAER*************************DRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAS*************************SFPKVPTLVNSGPSHDFVTKIS************PSNAIALGNG**F**SSEGTAHLTTSTGGSASE*****PS*TNFSDPVSFNTGE***********************************************************************************************************************************TSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSG************************************************************L**LAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMA*E******************ADEGDEVVERVLGWIMKLFPG***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASAQVLPTSRKQEHxxxxxxxxxxxxxxxxxxxxxKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEASRALSESLAAENSSLTDSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKILASEVIGLEEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	816
225433351	804	PREDICTED: uncharacterized protein LOC10	0.969	0.983	0.546	0.0
356533381	784	PREDICTED: uncharacterized protein LOC10	0.944	0.983	0.506	0.0
255554298	713	conserved hypothetical protein [Ricinus	0.870	0.995	0.477	1e-156
145338880	714	protein BLISTER [Arabidopsis thaliana] g	0.867	0.991	0.437	1e-144
297831252	728	hypothetical protein ARALYDRAFT_898989 [	0.609	0.682	0.554	1e-143
125528809	760	hypothetical protein OsI_04881 [Oryza sa	0.594	0.638	0.477	1e-109
115441767	760	Os01g0911800 [Oryza sativa Japonica Grou	0.594	0.638	0.477	1e-109
242055353	770	hypothetical protein SORBIDRAFT_03g04350	0.540	0.572	0.487	1e-109
414879058	748	TPA: hypothetical protein ZEAMMB73_30879	0.558	0.609	0.482	1e-108
147843847	443	hypothetical protein VITISV_004427 [Viti	0.359	0.661	0.679	1e-104

>gi|225433351|ref|XP_002282738.1| PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera] gi|297741880|emb|CBI33315.3| unnamed protein product [Vitis vinifera]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/829 (54%), Positives = 566/829 (68%), Gaps = 38/829 (4%)

Query: 1   MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEAD 60
           MASAQVL   RKQEHLEAGKR+LEEFRKKKAA+RAKK +S+SQ Q++D SL  Q  LE +
Sbjct: 1   MASAQVL---RKQEHLEAGKRRLEEFRKKKAADRAKKVASISQLQSADVSLCVQP-LENE 56

Query: 61  RVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDL 120
           +VRV D DGAG SDG  +AV  +     N+DNK +++ Q S+  S SD          D 
Sbjct: 57  QVRVMDSDGAGISDGVGEAVTKVI----NNDNKKIEIFQNSEPCS-SDIYAKPPFSTKDY 111

Query: 121 NSSSAYLAQTYSNNQ-----ETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMS 175
            + SA   QT  N+Q     + SG  G V     Q  K+ N+D  I++  +G   + I+S
Sbjct: 112 KAFSADSVQTQVNDQGFNRYDASGFLGLVG----QLAKEKNDDGGIHAGAEGSAYE-IVS 166

Query: 176 NQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQ 235
           +Q ++  P+A +D DSS SS+S F  +EE+Q K + S  K  T+++ G S   +   S +
Sbjct: 167 DQSIAF-PQAIRDTDSS-SSQSNFHRMEETQQKDHKSSLKSFTVIDPGISQVPLANASSE 224

Query: 236 NSVSTLFQSKPSNAIALGN-GHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVS 294
           NS          NAI   N G++   SS  + H  T+   SA  VG + P + +F+  + 
Sbjct: 225 NS---------GNAILPNNYGYANMKSSADSVHPITTAKQSAFGVGQDVPGSVDFNVHML 275

Query: 295 FNTGEGKPSNSASGLASLQ-STPFK-RSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRA 352
            N  + K S+S   L S   ++P    S  + + FD   S NH+P+ S T +    +SR 
Sbjct: 276 SNKEDKKLSSSFGYLPSTHGASPLASESSSTSFAFDVRGSSNHLPLYSVTPETNARRSRP 335

Query: 353 SFLDSLNVPRASSGTLFEQTEPERDS--FMSSSSLNSMDVLGSSPAQNPSMEKETTGAFS 410
           SFLDS+NVPR  S +    TEP +    F SSS +NSMDVLGSS +     E E    FS
Sbjct: 336 SFLDSINVPRVPSASHLPLTEPGKAEPFFSSSSKVNSMDVLGSSASTKSLAESENFEPFS 395

Query: 411 KTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIE 470
           K   SN PS FD+  N +VS  +R ++ R G +++S+E +  F+S K NEDFAALEQHIE
Sbjct: 396 KAGNSNGPSLFDHSINSSVSVGNRVEMLRHGLDQNSLERKFEFHSQKQNEDFAALEQHIE 455

Query: 471 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530
           DLTQEKF+LQR+LEASRAL+ESLAAENSSLTDSYNQQ SVVNQLKS+MEKLQEEIK QLV
Sbjct: 456 DLTQEKFSLQRALEASRALAESLAAENSSLTDSYNQQGSVVNQLKSDMEKLQEEIKAQLV 515

Query: 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 590
           +LESF+ EYAN +LECNAADERAK+LASEVIGLEEKALRLRS+ELKLERQLENS +EISS
Sbjct: 516 DLESFKIEYANAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLERQLENSNAEISS 575

Query: 591 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTE 650
           +KKK+SSLEKERQD Q TI+ALQEEKK++Q K+RKAS +GKSID  K+     + STST+
Sbjct: 576 FKKKVSSLEKERQDLQLTIDALQEEKKLLQKKVRKASANGKSIDASKSPTDRKDVSTSTD 635

Query: 651 DLAITDTTL---DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIH 707
           DL   D      + S+ +  + AS+   + S   LLP+ G++  E  +VNIP DQMRMI 
Sbjct: 636 DLVNEDNACMIPETSSLEMLNSASVQANELSSFPLLPDGGQMNFEVSSVNIPADQMRMIQ 695

Query: 708 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANEN 767
           NINALISELALEKEEL+QAL +E +QSSKLKDLN ELSRKLE QTQRLELLT+Q+MANE 
Sbjct: 696 NINALISELALEKEELMQALVTESSQSSKLKDLNKELSRKLEVQTQRLELLTSQSMANEV 755

Query: 768 ISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 816
           I  RQPDS   HD+ AYADEGDEVVERVLGWIM+LFPGGP++RRTSKLL
Sbjct: 756 IQARQPDSRIMHDNAAYADEGDEVVERVLGWIMRLFPGGPAKRRTSKLL 804

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533381|ref|XP_003535243.1| PREDICTED: uncharacterized protein LOC100817279 [Glycine max]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/829 (50%), Positives = 546/829 (65%), Gaps = 58/829 (6%)

Query: 1   MASAQVLP----TSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHH 56
           MASAQVLP    +SRKQEHLEAGKR+LEEFRKKKAAER KKA+S  Q   SD SL+ +  
Sbjct: 1   MASAQVLPNSTASSRKQEHLEAGKRRLEEFRKKKAAERTKKAASSGQVHNSDDSLNKKQS 60

Query: 57  LEADRVRVTDLDGAGTSDGPDKAVVSL-PLVMHNDDNKALKLAQQSQQVSLSDKRINSNC 115
            E + VRV + DG  TSD    +V     L M ND N  L  +Q S Q SL+        
Sbjct: 61  SEVENVRVNESDGVTTSDAVGGSVTDTSTLGMRNDKNLNL-FSQSSNQGSLAGSTF---L 116

Query: 116 FENDLNSSSAYLAQTYSNNQE-----TSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLR 170
             NDLN SS  L + +SN  E      S      + S + E   VN+ + I++ G   + 
Sbjct: 117 TRNDLNMSSTSLGEAHSNIDEGKRYNASSVTASADFSQNNERNKVNDIYGIHAVGVDGIP 176

Query: 171 DGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVT 230
               ++Q + L  + SQ++D  N + S   G+ ++QS  ++S  K   + ++  S+ F +
Sbjct: 177 YVTTNHQSVPLCSQESQEFD--NHATSSLHGVNDNQSNKSNSSLKDYAVTDNFSSY-FPS 233

Query: 231 KISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFS 290
           KI+PQNSV T  Q KP+N+    +G+S                 S    G +   ++ F 
Sbjct: 234 KITPQNSVDTPLQIKPTNSSTFDSGYSH----------------SLLSGGFSDSFSSKFR 277

Query: 291 DPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKS 350
           + V+         +S + L SL      + + +GY  +A NS NH P+ S   + +  +S
Sbjct: 278 ETVT---------SSDNNLPSLHGATMPKYDSTGY--EARNSSNHTPIHSLPTESSSRRS 326

Query: 351 RASFLDSLNVPRASSGTLFEQTEPERDSFMSS---SSLNSMDVLGSSPAQNPSMEKETTG 407
           R SFLDSLNV R S G+ F Q+E  +DS MS+   SS N  D+ GS+    PS E +   
Sbjct: 327 RPSFLDSLNVTRPSLGSPFHQSE--QDSLMSNYLESSSN--DISGSAYFHKPSEETKIMP 382

Query: 408 AFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQ 467
            FS  TT+N+ S+ + L  P+V  +D        + ES +E +H +YS+  NEDF ALEQ
Sbjct: 383 LFSNFTTANVHSSLEPLTTPSVVDNDNQGALITSTRESGMEKKHDYYSSSQNEDFTALEQ 442

Query: 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527
           HIEDLT+EKF+LQR+LEASR L+ESLA ENS+LTD+YNQQRSVVNQLKS+ME L E+IK 
Sbjct: 443 HIEDLTKEKFSLQRALEASRTLAESLATENSTLTDNYNQQRSVVNQLKSDMENLHEDIKA 502

Query: 528 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 587
           +LVELE+ ++EY N +LECNAADERAK+LASEVIGLEEKALRLRS+ELKLE+QLEN++ E
Sbjct: 503 RLVELEAIKSEYTNAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLEKQLENAKEE 562

Query: 588 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNAST 647
           ISSY+KK+SSL+K+R D QSTIEALQEEKKM+ SKLRKASG GKSI+      S  + ST
Sbjct: 563 ISSYRKKMSSLDKDRHDLQSTIEALQEEKKMLLSKLRKASGIGKSIE---NQTSKRDVST 619

Query: 648 STEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIH 707
           STEDLA  D   ++SN + +D+A+    +AS  + + E+   +     VNIPHDQMRMI 
Sbjct: 620 STEDLASEDPASNSSNPEINDNAA----EASSLSSVTETRHSSFGVSPVNIPHDQMRMIE 675

Query: 708 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANEN 767
           NINALISELALEKEEL++AL+SE ++ S++K++N ELSRKLE QTQRLELLTAQ+M NEN
Sbjct: 676 NINALISELALEKEELIKALTSESSECSRMKEINMELSRKLEVQTQRLELLTAQSMVNEN 735

Query: 768 ISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 816
           IS +QPDS + +++T+YADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Sbjct: 736 ISAKQPDSRAMYENTSYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 784

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554298|ref|XP_002518189.1| conserved hypothetical protein [Ricinus communis] gi|223542785|gb|EEF44322.1| conserved hypothetical protein [Ricinus communis]

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 391/819 (47%), Positives = 491/819 (59%), Gaps = 109/819 (13%)

Query: 1   MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDF-SLHDQHHLEA 59
           MASAQVLP+SRKQEHLEAGKR+LEEFRKKKAA+RA+KA++ SQP AS   S++++  LE+
Sbjct: 1   MASAQVLPSSRKQEHLEAGKRRLEEFRKKKAADRARKAAATSQPLASSVVSVNEKQALES 60

Query: 60  DRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFEND 119
           + VR+TD DGAGTSDGP +  VS   +    D  A+  +    +  L+D  +NS+ F   
Sbjct: 61  EIVRLTDSDGAGTSDGPIEVTVSGTTL---KDADAIPPSMSHYKAPLADIHVNSHDFTRP 117

Query: 120 LNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQ-GRLRDGIMSNQF 178
            N+S A                   +     ET  +NND   YS  Q G +   I+S++ 
Sbjct: 118 -NASVA------------------ADAKYDIETDQMNNDTDTYSGSQDGVVPYVILSSRH 158

Query: 179 LSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSV 238
            S+ P + + +    S    FQ +E + S  + +F        + PS    TKIS     
Sbjct: 159 SSIPPPSQESF----SQSIPFQSMEYNTSLKDYAF--------TAPS-PLQTKIS----- 200

Query: 239 STLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTG 298
                   SNA  L     F        H     G S     L      +F+  +  + G
Sbjct: 201 --------SNASTLVTDVDF------IQHNNNLRGSS-----LEVEQDKHFNGSLRNDFG 241

Query: 299 EGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSL 358
           E   S S  G  S      + S+  GY+ D+ +S NH  + S T++    +SR SFLDSL
Sbjct: 242 EANFSISLGGFPSAYGKSMQTSDTIGYDSDSKSSSNHTQLLSGTSEPNSRRSRPSFLDSL 301

Query: 359 NVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIP 418
           NV RASSGT F+ TE +++SFM   S N M  L SS  QN S+E +T G           
Sbjct: 302 NVTRASSGTSFQPTELQKESFMPGKS-NGMGALDSSTFQNLSVEAQTLG----------- 349

Query: 419 SAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFA 478
                  +P   ++    +     +E+S   +H FYS+KHNEDFAALEQHIEDLTQEKF+
Sbjct: 350 ------HHPMTFSASSNSVEMSNIDENSWGRKHEFYSSKHNEDFAALEQHIEDLTQEKFS 403

Query: 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538
           LQR+LE+SRAL+ESLAAENSSLTD+YNQQRS VNQLKS+MEKLQEEIKV LVELES + E
Sbjct: 404 LQRALESSRALAESLAAENSSLTDNYNQQRSAVNQLKSDMEKLQEEIKVHLVELESVKME 463

Query: 539 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS-S 597
           Y N +LEC+A+DERAKILASEVIGLEEK        + L           S++  ++S  
Sbjct: 464 YGNAKLECDASDERAKILASEVIGLEEKVFNFF---VML----------FSTFTTQVSLV 510

Query: 598 LEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDT 657
           L      F  T      EKK++QSKLRKAS SGKS+D  + + +  + STSTED      
Sbjct: 511 LCFNNCQFYDT------EKKLLQSKLRKASASGKSLDISQNSGNKKDMSTSTED------ 558

Query: 658 TLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELA 717
            LD  N++T D  +L   D     + PE+G+  LE   V+IP DQMR+I NIN LISELA
Sbjct: 559 -LDPCNEETVDTTALIGNDI---PIHPENGQSNLEVSTVHIPADQMRLIENINTLISELA 614

Query: 718 LEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSAS 777
           LEKEEL+QALSSE +Q S+LKDLNNELSRKLE QTQRLELLTAQ+MANENI  R PDS +
Sbjct: 615 LEKEELMQALSSESSQCSRLKDLNNELSRKLEAQTQRLELLTAQSMANENIQARLPDSHA 674

Query: 778 THDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 816
             + T YADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Sbjct: 675 MQETTTYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 713

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338880|ref|NP_189040.3| protein BLISTER [Arabidopsis thaliana] gi|9294667|dbj|BAB03016.1| unnamed protein product [Arabidopsis thaliana] gi|332643320|gb|AEE76841.1| protein BLISTER [Arabidopsis thaliana]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 360/822 (43%), Positives = 487/822 (59%), Gaps = 114/822 (13%)

Query: 1   MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEAD 60
           MASA    +SR+QE +EAG+RKLE+FRK+KAAE+AKKAS  +QP            ++  
Sbjct: 1   MASAT---SSRRQEDVEAGRRKLEQFRKRKAAEKAKKASQNTQP------------VDNS 45

Query: 61  RVRVTDLDGAGTS--DGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFEN 118
           +  V D DGAG S  +GP                  LK + +S       K + +  F N
Sbjct: 46  QQSVIDSDGAGASISNGP------------------LKQSAESTSNETHTKDVYNLSFSN 87

Query: 119 DLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQF 178
                 +       + QE   S G V+ SNS E    + D  +              N  
Sbjct: 88  TAMDDGSKERSRQDDGQE---SVGKVDFSNSLELIGSSKDLTV--------------NTR 130

Query: 179 LSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSV 238
             ++P ++ D  SS                  +SF +  TL                   
Sbjct: 131 PEVVPYSNIDKQSS------------------ESFDRASTL----------------RET 156

Query: 239 STLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTG 298
           ++LF           +G    SS + +   TT   GS  EV  N   +      +     
Sbjct: 157 ASLFSGTSMQMDGFIHGSGLTSSRKDSLQPTTRMAGSFDEVAKNQQGSGELGGSIV---- 212

Query: 299 EGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSL 358
             KP+ S+S L +   T  + SE S ++ +  +S    P++SA ++ T+ +SR SFLDSL
Sbjct: 213 -QKPTLSSSYLFNSPDTSSRPSEPSDFSVNITSS---SPLNSAKSEATVKRSRPSFLDSL 268

Query: 359 NVPRASSGTLFEQTEPERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTT-TSN 416
           N+ RA   T ++  E + D   SS S L+  D  G S     S  +++ G  S T+  S+
Sbjct: 269 NISRAPE-TQYQHPEIQADLVTSSGSQLSGSDGFGPSYI---SGRRDSNGPSSLTSGASD 324

Query: 417 IPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEK 476
            P+ F+   +     ++             +     F   K N+DF ALEQHIEDLTQEK
Sbjct: 325 YPNPFEKFRSSLYPAAN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEK 373

Query: 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536
           F+LQR L+ASRAL+ESLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+ Q+ ELES R
Sbjct: 374 FSLQRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQAQMGELESVR 433

Query: 537 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596
            EYAN +LECNAADER++ILASEVI LE+KALRLRSNELKLER+LE +Q+E+ SYKKK+ 
Sbjct: 434 VEYANAQLECNAADERSQILASEVISLEDKALRLRSNELKLERELEKAQTEMLSYKKKLQ 493

Query: 597 SLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITD 656
           SLEK+RQD QSTI+ALQEEKK++Q+ ++KAS  GKS D  K + S  N STSTE LAI+D
Sbjct: 494 SLEKDRQDLQSTIKALQEEKKVLQTMVQKASSGGKSTDLSKNSTSRKNVSTSTEGLAISD 553

Query: 657 TTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISEL 716
           TT ++SNQ+T D  +L   D+S + ++PE+ +L LEG ++++P DQMR+IHNIN LI+EL
Sbjct: 554 TTPESSNQET-DSTTLLESDSSNTAIIPETRQLTLEGFSLSVPADQMRVIHNINTLIAEL 612

Query: 717 ALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENIS--FRQPD 774
           A+EKEELVQALSSEL++S+ +++LN ELSRKLE QTQRLEL+TAQ MA +N+S   +QPD
Sbjct: 613 AIEKEELVQALSSELSRSAHVQELNKELSRKLEAQTQRLELVTAQKMAIDNVSPEKQQPD 672

Query: 775 SASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 816
           +    + T  ADEGDEVVERVLGWIMK+FPGGPS+RRTSKLL
Sbjct: 673 THVVQERTPIADEGDEVVERVLGWIMKMFPGGPSKRRTSKLL 714

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831252|ref|XP_002883508.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata] gi|297329348|gb|EFH59767.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 288/519 (55%), Positives = 378/519 (72%), Gaps = 22/519 (4%)

Query: 301 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNV 360
           KP+ S+S L     T  + SE S ++    N  +  P++SA ++  + +SR SFLDSLN+
Sbjct: 229 KPTLSSSYLFRSPDTSSRPSESSDFSV---NFTSSSPLNSAKSEAIVKRSRPSFLDSLNI 285

Query: 361 PRASSGTLFEQTEPERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPS 419
            RA   T ++  E + D   SS S L   D  G S     S  +++ G    +  S+ P+
Sbjct: 286 SRAPE-TQYQHPEIKADLVTSSGSQLTGSDGFGPSYI---SGRRDSNGPSLTSGASDSPN 341

Query: 420 AFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFAL 479
            F+   +P    ++             +     F   K N+DF ALEQHIEDLTQEKF+L
Sbjct: 342 PFEKFRSPLYPAAN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEKFSL 390

Query: 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539
           QR L+ASRAL+ESLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+VQ+ ELES R EY
Sbjct: 391 QRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQVQMGELESVRIEY 450

Query: 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 599
           AN +LECNAADER++ILASEVI LE+KALRLRSNELKLER+LEN+Q+E+ SYKKK+ SLE
Sbjct: 451 ANAQLECNAADERSQILASEVISLEDKALRLRSNELKLERELENAQAEMLSYKKKLQSLE 510

Query: 600 KERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTL 659
           K+RQD QSTI+ALQEEKK++Q+ ++KAS  GKS D  KT+ S  NASTSTE LAI+DTT 
Sbjct: 511 KDRQDLQSTIKALQEEKKVLQTMVQKASSGGKSTDLSKTSTSRKNASTSTEGLAISDTTP 570

Query: 660 DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALE 719
            +SNQ+T D A+L   D+S + ++PE+G+L LEG ++++P DQMR+IHNIN LI+ELA+E
Sbjct: 571 KSSNQET-DSATLLESDSSNTAIIPETGQLTLEGFSLSVPADQMRVIHNINTLIAELAIE 629

Query: 720 KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENIS--FRQPDSAS 777
           KEELVQALSSEL++S+++++LN ELSRKLE QT+RLEL+TAQ MA +N+S   +Q DS  
Sbjct: 630 KEELVQALSSELSRSAQVQELNKELSRKLEAQTKRLELVTAQKMAIDNVSPEKQQLDSHV 689

Query: 778 THDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 816
             + T  ADEGDEVVERVLGWIMK+FPGGPS+RRTSKLL
Sbjct: 690 VQERTPIADEGDEVVERVLGWIMKMFPGGPSKRRTSKLL 728

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528809|gb|EAY76923.1| hypothetical protein OsI_04881 [Oryza sativa Indica Group]

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 259/542 (47%), Positives = 340/542 (62%), Gaps = 57/542 (10%)

Query: 301 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVS--------SATNKFTLGKSRA 352
           K S+ A GLA   S    R   S +N ++ N+ N  PV         S+    T  +SR 
Sbjct: 250 KDSSQADGLAYASS----REYGSAFN-NSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRP 304

Query: 353 SFLDSLNVPRASSGTLFEQTEPERDS--FMSSSSLNSM------------DVLGSSPAQN 398
           SFLDS+ V RA + T     EP + S  F +S+S +S             DV GS  +  
Sbjct: 305 SFLDSIGVQRAPT-TEVPYVEPAKASKPFGNSNSESSFFQPPNQQSAGSNDVDGSLKSGR 363

Query: 399 PSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKH 458
                E     +   T + PS                D R L  +    +N   F     
Sbjct: 364 QEYNNEKGSYGNSIRTDSFPSK---------------DERNLHHSTQMFQN---FTIPGK 405

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
           ++DFAALEQ IEDLT+EKFALQR+LE S+ L+++LA +NS+LTD +NQQ  V++ L S+M
Sbjct: 406 DDDFAALEQLIEDLTKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTSDM 465

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
           E+LQ EI+ QL+ LES R EYAN +LECNAADERAK+LA+EVI LE+KALRLRS+ELKLE
Sbjct: 466 ERLQNEIQAQLLALESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELKLE 525

Query: 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKT 638
           +++E   SEISSY++K+SSLEKERQ  QST+EALQEEKK++ SKLR  S + K     K 
Sbjct: 526 KEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIEKP 585

Query: 639 AASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA----LEGL 694
           +A   +AST+TEDL   +++   +     D          G T +  S  +A    LE +
Sbjct: 586 SADKRDASTATEDLDTGESSSSETLTSAIDTVE------DGETSVSRSNNVADFTYLEEV 639

Query: 695 AVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 754
           + +IPHDQ+RMI NIN+L+SELA+E+EEL++AL  E +  SKLK+LN +L++KLE QT R
Sbjct: 640 SSSIPHDQLRMIDNINSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLEIQTHR 699

Query: 755 LELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSK 814
           LELL++Q MANEN+  +  D+ S +D T YADEGDEVVERVLGWIMKLFPGGP +RRTSK
Sbjct: 700 LELLSSQRMANENVLPKPIDTRSINDATMYADEGDEVVERVLGWIMKLFPGGP-KRRTSK 758

Query: 815 LL 816
           LL
Sbjct: 759 LL 760

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441767|ref|NP_001045163.1| Os01g0911800 [Oryza sativa Japonica Group] gi|20161363|dbj|BAB90287.1| heavy meromyosin-like [Oryza sativa Japonica Group] gi|113534694|dbj|BAF07077.1| Os01g0911800 [Oryza sativa Japonica Group] gi|125573067|gb|EAZ14582.1| hypothetical protein OsJ_04505 [Oryza sativa Japonica Group]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 259/542 (47%), Positives = 340/542 (62%), Gaps = 57/542 (10%)

Query: 301 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVS--------SATNKFTLGKSRA 352
           K S+ A GLA   S    R   S +N ++ N+ N  PV         S+    T  +SR 
Sbjct: 250 KDSSQADGLAYASS----REYGSAFN-NSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRP 304

Query: 353 SFLDSLNVPRASSGTLFEQTEPERDS--FMSSSSLNSM------------DVLGSSPAQN 398
           SFLDS+ V RA + T     EP + S  F +S+S +S             DV GS  +  
Sbjct: 305 SFLDSIGVQRAPT-TEVPYVEPAKASKPFGNSNSESSFFQPPNQQSAGSNDVDGSLKSGR 363

Query: 399 PSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKH 458
                E     +   T + PS                D R L  +    +N   F     
Sbjct: 364 QEYNNEKGSYGNSIRTDSFPSK---------------DERNLHHSTQMFQN---FTIPGK 405

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
           ++DFAALEQ IEDLT+EKFALQR+LE S+ L+++LA +NS+LTD +NQQ  V++ L S+M
Sbjct: 406 DDDFAALEQLIEDLTKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTSDM 465

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
           E+LQ EI+ QL+ LES R EYAN +LECNAADERAK+LA+EVI LE+KALRLRS+ELKLE
Sbjct: 466 ERLQNEIQAQLLALESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELKLE 525

Query: 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKT 638
           +++E   SEISSY++K+SSLEKERQ  QST+EALQEEKK++ SKLR  S + K     K 
Sbjct: 526 KEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIEKP 585

Query: 639 AASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA----LEGL 694
           +A   +AST+TEDL   +++   +     D          G T +  S  +A    LE +
Sbjct: 586 SADKRDASTATEDLDTGESSSSETLTSAIDTVE------DGETSVSRSNNVADFTYLEEV 639

Query: 695 AVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 754
           + +IPHDQ+RMI NIN+L+SELA+E+EEL++AL  E +  SKLK+LN +L++KLE QT R
Sbjct: 640 SSSIPHDQLRMIDNINSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLEIQTHR 699

Query: 755 LELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSK 814
           LELL++Q MANEN+  +  D+ S +D T YADEGDEVVERVLGWIMKLFPGGP +RRTSK
Sbjct: 700 LELLSSQRMANENVLPKPIDTRSINDATLYADEGDEVVERVLGWIMKLFPGGP-KRRTSK 758

Query: 815 LL 816
           LL
Sbjct: 759 LL 760

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055353|ref|XP_002456822.1| hypothetical protein SORBIDRAFT_03g043500 [Sorghum bicolor] gi|241928797|gb|EES01942.1| hypothetical protein SORBIDRAFT_03g043500 [Sorghum bicolor]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/513 (48%), Positives = 331/513 (64%), Gaps = 72/513 (14%)

Query: 337 PVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSS-------------- 382
           P  S+    T  +SR SFLDS+ V RA   T     EP + + +SS              
Sbjct: 297 PFLSSGYPTTYTRSRPSFLDSIGVQRAPPTTQASYREPAKTNQLSSNLNYQSPFLQQSNQ 356

Query: 383 --SSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRL 440
             +  N+ D+  +S +Q  S EK + G+      SN P   D+                L
Sbjct: 357 QSTGSNATDISFASESQKYSHEKGSYGS------SNPP---DF---------------SL 392

Query: 441 GSNESSIENQHG------FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA 494
              E SI  QHG      F +   ++DFAALEQ IEDLT+EKF+LQR+++ S+ L+E+LA
Sbjct: 393 PKEERSI--QHGNQTFQNFTTHGKDDDFAALEQLIEDLTKEKFSLQRTVQKSQELAETLA 450

Query: 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554
            +NS+LTD +NQQ  +++QL S+ME+LQEEI+ QL+ LES R EYAN +LECNAADERAK
Sbjct: 451 TDNSALTDKFNQQAHIISQLTSDMERLQEEIQAQLLALESVRTEYANAQLECNAADERAK 510

Query: 555 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614
           +LA+EVI LE+KALRLRS+ELKLE+++E   SEISSY++K+SSLEKERQ  QST+EALQE
Sbjct: 511 VLAAEVILLEDKALRLRSSELKLEKEIEGLHSEISSYRRKVSSLEKERQHLQSTVEALQE 570

Query: 615 EKKMMQSKLRKASGSGKSIDFGKTAASTV--------NASTSTEDL---AITDTTLDNSN 663
           EKK++ SKLR       +I   + A +TV        +AST+TEDL    ++ +    S 
Sbjct: 571 EKKLLYSKLR-------NIPMNERATTTVEKPSVEKRDASTATEDLDTGELSSSETLTST 623

Query: 664 QDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEEL 723
            DT +DA      ++  +  P     +LE ++ +IP DQ+RMI NIN+L+SELA+E+EEL
Sbjct: 624 VDTLEDAGTSVRRSNIMSDFP-----SLEEVSSSIPDDQLRMIDNINSLMSELAVEREEL 678

Query: 724 VQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTA 783
           ++AL  E +  SKLKDLN +L++KLE QT RLELLT+Q MANEN   +  D+ S +D   
Sbjct: 679 LRALRIESSNCSKLKDLNKDLTQKLEIQTHRLELLTSQRMANENALAKPIDTRSINDAAI 738

Query: 784 YADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 816
           YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 739 YADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 770

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414879058|tpg|DAA56189.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays] gi|414879059|tpg|DAA56190.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays] gi|414879060|tpg|DAA56191.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays]

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/518 (48%), Positives = 331/518 (63%), Gaps = 62/518 (11%)

Query: 324 GYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPER------- 376
           G NF+  +     P  S+    T  +SR SFLDS+ V R    T     EP +       
Sbjct: 268 GVNFERQD-----PFLSSGYPTTYTRSRPSFLDSIGVQRVPPTTQASYREPAKANQLSHN 322

Query: 377 ----DSFMSSS-----SLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNP 427
                SF+  S     S N+ D+  +S +Q  S EK + G      +SN P   D+    
Sbjct: 323 SNYQSSFVKQSNQQPTSSNAADISFASESQEYSHEKGSYG------SSNHP---DF---- 369

Query: 428 TVSTSDRGDIRRLGSNESSIENQHG------FYSTKHNEDFAALEQHIEDLTQEKFALQR 481
                       L   E SI  QHG      F +   ++DFA LEQ IEDLT+EKF+LQR
Sbjct: 370 -----------SLPKEERSI--QHGKQTFQNFATHGKDDDFATLEQLIEDLTKEKFSLQR 416

Query: 482 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541
           SL+ S+ L+E+LA +NS+LTD +NQQ  V++QL S+ME+LQEEI+ QL+ LES R EYAN
Sbjct: 417 SLQKSQELAETLATDNSALTDKFNQQAHVISQLTSDMERLQEEIQAQLLALESVRTEYAN 476

Query: 542 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 601
            +LEC+AADERAK+LA+EVI LE+KALRLRS+ELKLE+++E   SEIS+Y++K+SSLEKE
Sbjct: 477 AQLECSAADERAKVLAAEVILLEDKALRLRSSELKLEKEVEGLHSEISAYRRKVSSLEKE 536

Query: 602 RQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL---AITDTT 658
           RQ  QST+EALQEEKK++ SKLR    + ++    K +    +AST TEDL    I+ + 
Sbjct: 537 RQHLQSTVEALQEEKKLLYSKLRNIPVNERATTVEKPSVDKKDASTVTEDLDTGEISSSE 596

Query: 659 LDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELAL 718
              S  D  +DA    + ++  +  P S     E ++ +IP DQ+RMI NIN+L+SELA+
Sbjct: 597 TLTSTVDILEDAGTSVLRSNIVSDFPSS-----EQVSSSIPDDQLRMIDNINSLMSELAV 651

Query: 719 EKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSAST 778
           E+EEL++AL  E +  SKLK+LN +L++KLE QTQRLELLT+Q MANEN   +  D+   
Sbjct: 652 EREELLRALRIESSNCSKLKELNKDLTQKLEVQTQRLELLTSQRMANENALAKPIDTRPI 711

Query: 779 HDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 816
           ++ T YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 712 NEATMYADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 748

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843847|emb|CAN79450.1| hypothetical protein VITISV_004427 [Vitis vinifera]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/296 (67%), Positives = 239/296 (80%), Gaps = 3/296 (1%)

Query: 524 EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 583
           E +  +V+LESF+ EYAN +LECNAADERAK+LASEVIGLEEKALRLRS+ELKLERQLEN
Sbjct: 148 EKRCLMVDLESFKIEYANAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLERQLEN 207

Query: 584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTV 643
           + +EISS+KKK+SSLEKERQD Q TI+ALQEEKK++Q K+RKAS +GKSID  K+     
Sbjct: 208 TNAEISSFKKKVSSLEKERQDLQLTIDALQEEKKLLQKKVRKASANGKSIDASKSPTDRK 267

Query: 644 NASTSTEDLAITDTTL---DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPH 700
           + STST+DL   D      + S+ +  + AS+   + S   LLP+ G++  E  +VNIP 
Sbjct: 268 DVSTSTDDLVNEDNACMIPETSSLEMLNSASVQANELSSFPLLPDGGQMNFEVSSVNIPA 327

Query: 701 DQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 760
           DQMRMI NINALISELALEKEEL+QAL +E +QSSKLKDLN ELSRKLE QTQRLELLT+
Sbjct: 328 DQMRMIQNINALISELALEKEELMQALVTESSQSSKLKDLNKELSRKLEVQTQRLELLTS 387

Query: 761 QNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 816
           Q+MANE I  RQPDS   HD+ AYADEGDEVVERVLGWIM+LFPGGP++RRTSKLL
Sbjct: 388 QSMANEVIQARQPDSRIMHDNAAYADEGDEVVERVLGWIMRLFPGGPAKRRTSKLL 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	816
TAIR|locus:2076071	714	BLI "BLISTER" [Arabidopsis tha	0.707	0.808	0.437	3.4e-113
DICTYBASE|DDB_G0271670	374	DDB_G0271670 [Dictyostelium di	0.395	0.863	0.172	6.7e-06
ZFIN|ZDB-GENE-080618-2	538	prdm1b "PR domain containing 1	0.414	0.628	0.212	0.00025
POMBASE|SPBC215.13	534	SPBC215.13 "sequence orphan" [	0.334	0.511	0.226	0.00032
UNIPROTKB|O18515	534	O18515 "Nucleoporin p62" [Hydr	0.247	0.378	0.221	0.00049
UNIPROTKB|I3LRD3	2501	CENPE "Uncharacterized protein	0.332	0.108	0.224	0.00098
CGD|CAL0006203	768	orf19.4906 [Candida albicans (	0.296	0.315	0.247	0.00098
UNIPROTKB|Q5APQ2	768	CaO19.4906 "Putative uncharact	0.296	0.315	0.247	0.00098

TAIR|locus:2076071 BLI "BLISTER" [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 3.4e-113, Sum P(2) = 3.4e-113
 Identities = 266/608 (43%), Positives = 359/608 (59%)

Query:   220 VNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEV 279
             VN+ P     + I  Q+S S    S      +L +G S     +G  H +  T      +
Sbjct:   127 VNTRPEVVPYSNIDKQSSESFDRASTLRETASLFSGTSMQM--DGFIHGSGLTSSRKDSL 184

Query:   280 GLNTPSTTNFSDPVSFNTGEG--------KPSNSASGLASLQSTPFKRSEYSGYNFDAGN 331
                T    +F +      G G        KP+ S+S L +   T  + SE S ++ +  +
Sbjct:   185 QPTTRMAGSFDEVAKNQQGSGELGGSIVQKPTLSSSYLFNSPDTSSRPSEPSDFSVNITS 244

Query:   332 SFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXX 391
             S    P++SA ++ T+ +SR SFLDSLN+ RA   T ++   PE                
Sbjct:   245 SS---PLNSAKSEATVKRSRPSFLDSLNISRAPE-TQYQH--PEIQADLVTSSGSQLSGS 298

Query:   392 XXXPAQNPSMEKETTGAFSKTT-TSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQ 450
                     S  +++ G  S T+  S+ P+ F+   +     ++ G +   G  + S+  Q
Sbjct:   299 DGFGPSYISGRRDSNGPSSLTSGASDYPNPFEKFRSSLYPAAN-GVMP--GFTDFSMPKQ 355

Query:   451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQXXXXXXXXXXXXXXXXXXXXTDSYNQQRSV 510
                     N+DF ALEQHIEDLTQEKF+LQ                    TD+YNQQR +
Sbjct:   356 --------NDDFTALEQHIEDLTQEKFSLQRDLDASRALAESLASENSSMTDTYNQQRGL 407

Query:   511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570
             VNQLK +ME+L ++I+ Q+ ELES R EYAN +LECNAADER++ILASEVI LE+KALRL
Sbjct:   408 VNQLKDDMERLYQQIQAQMGELESVRVEYANAQLECNAADERSQILASEVISLEDKALRL 467

Query:   571 RSNELKLERQLENXXXXXXXXXXXXXXXXXXRQDFQSTIEALQEEKKMMQSKLRKASGSG 630
             RSNELKLER+LE                   RQD QSTI+ALQEEKK++Q+ ++KAS  G
Sbjct:   468 RSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEKKVLQTMVQKASSGG 527

Query:   631 KSIDFGKXXXXXXXXXXXXEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA 690
             KS D  K            E LAI+DTT ++SNQ+T D  +L   D+S + ++PE+ +L 
Sbjct:   528 KSTDLSKNSTSRKNVSTSTEGLAISDTTPESSNQET-DSTTLLESDSSNTAIIPETRQLT 586

Query:   691 LEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH 750
             LEG ++++P DQMR+IHNIN LI+ELA+EKEELVQALSSEL++S+ +++LN ELSRKLE 
Sbjct:   587 LEGFSLSVPADQMRVIHNINTLIAELAIEKEELVQALSSELSRSAHVQELNKELSRKLEA 646

Query:   751 QTQRLELLTAQNMANENIS--FRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPS 808
             QTQRLEL+TAQ MA +N+S   +QPD+    + T  ADEGDEVVERVLGWIMK+FPGGPS
Sbjct:   647 QTQRLELVTAQKMAIDNVSPEKQQPDTHVVQERTPIADEGDEVVERVLGWIMKMFPGGPS 706

Query:   809 RRRTSKLL 816
             +RRTSKLL
Sbjct:   707 KRRTSKLL 714

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0010091 "trichome branching" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0271670 DDB_G0271670 [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 6.7e-06, P = 6.7e-06
 Identities = 56/325 (17%), Positives = 128/325 (39%)

Query:    96 KLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDV 155
             +L + ++   + D  + S  F N L++SS+  + + S++  +S S+   + S+S  +   
Sbjct:    41 QLEKTNKMAEVGDLGVAS--FLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 98

Query:   156 NNDFVIYSSGQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEESQSKGNDSFPK 215
             ++     SS          S+   S    +                   S S  + S   
Sbjct:    99 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 158

Query:   216 VPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGS 275
               +  +S  S    +  S  +S S+   S  S++ +  +  S  SSS  ++  ++S+  S
Sbjct:   159 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 218

Query:   276 ASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNH 335
             +S    ++ S+++ S   S ++     S+S+S  +S  S+    S  S  +  + +S + 
Sbjct:   219 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 278

Query:   336 VPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXXXXXP 395
                SS+++  +   S +S   S +   +SS +    +                       
Sbjct:   279 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 338

Query:   396 AQNPSMEKETTGAFSKTTTSNIPSA 420
             + + S    ++ + S +++S+  S+
Sbjct:   339 SSSSSSSSSSSSSSSSSSSSSSSSS 363

GO:0005576 "extracellular region" evidence=IEA

ZFIN|ZDB-GENE-080618-2 prdm1b "PR domain containing 1b, with ZNF domain" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 0.00025, P = 0.00025
 Identities = 78/367 (21%), Positives = 140/367 (38%)

Query:    10 SRKQEHLEAGXXXXXXXXXXXXXXXXXXXSSVSQPQASDFSLHDQHHLEADRVRVTDLDG 69
             S+K+ HLE G                   S +S+P+++D S+H+   L   +  V  +  
Sbjct:     2 SQKRSHLEHGEYSNAASLTQE--------SYISRPESTDSSIHESSSLFIPKSPVFSIPE 53

Query:    70 AGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQ 129
             +  S  P     S+P V  + D + L  +   +    S  +I+++      ++S   ++ 
Sbjct:    54 SSFSSDPQNPTASIPQVSSSSDPQ-LSTSSIPESSFSSGPQISTSSIPQSTSTSVPQIS- 111

Query:   130 TYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSS--GQGRLRDGIMSNQFLSLLPEAXX 187
             T S  Q  S S   ++ S+  ++  V+   +  SS        D  +S    SL+PE   
Sbjct:   112 TSSIPQSASTSVSQISTSSVPDSSSVSVPQIFISSVPQSSSSSDPQIST---SLIPEFSS 168

Query:   188 XXXXXXXXXXGFQGIEESQSK-GNDSFPK-----VPTLVNSGPSHDFVTKISPQNSVSTL 241
                         Q    S  +    S P+     VP +  S       T + PQ S S++
Sbjct:   169 SSDPQIFTSSILQSTSTSVPQISTSSIPQSSSSSVPQISTSSIHQSSPTSV-PQMSTSSI 227

Query:   242 FQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGK 301
              Q   S+   +       SSS     ++TS+   +S   +   ST++     S +  +  
Sbjct:   228 PQGSSSSVPQISTSSIPQSSSSSVPQISTSSIPQSSPTSVPQISTSSIPQGSSSSVPQIS 287

Query:   302 PSN---SASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDS- 357
              S+   S++      STP      S Y   +  S  H    S  +  T+ +S ++  +S 
Sbjct:   288 ISSIPQSSTNSVPHSSTPLVHESSSSYIPQSSTSTMH---DSFNSDSTMTQSFSTNTNSA 344

Query:   358 LNVPRAS 364
              N+P  S
Sbjct:   345 FNLPEDS 351

GO:0005737 "cytoplasm" evidence=IEA

GO:0018149 "peptide cross-linking" evidence=IEA

POMBASE|SPBC215.13 SPBC215.13 "sequence orphan" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 124 (48.7 bits), Expect = 0.00032, P = 0.00032
 Identities = 64/283 (22%), Positives = 119/283 (42%)

Query:    94 ALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQT--YSNNQETSGSAGPVNVSNSQE 151
             +L  +  S Q S+S    ++       ++SS+YL+ +   S++   S S+     S+S  
Sbjct:   177 SLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLS 236

Query:   152 TKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEE-SQSKGN 210
             T  + +     SS    L     S+   S    +                    S S  +
Sbjct:   237 TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSS 296

Query:   211 DSFPKVPTLV---NSGPSHDFVTKISPQN-SVSTLFQSKP-SNAIALGNGHSFHSSSEGT 265
              S P   +     +S  S  F + +S  + S S+ F S P S++  + +  S  SSS  +
Sbjct:   297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFS 356

Query:   266 AHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGY 325
             +  ++S   S+    +++ S+T+ S   S ++   +P++S+S  +SL S     S  S  
Sbjct:   357 STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSS- 415

Query:   326 NFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTL 368
             +    ++F H   SS ++  +   S +S L S  +  ASS +L
Sbjct:   416 SAPVSSAFYHNSTSSRSSSHSSSHSLSS-LSSKPILTASSSSL 457

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009986 "cell surface" evidence=NAS

GO:0031225 "anchored to membrane" evidence=IEA

UNIPROTKB|O18515 O18515 "Nucleoporin p62" [Hydra vulgaris (taxid:6087)]

 Score = 106 (42.4 bits), Expect = 0.00049, Sum P(3) = 0.00049
 Identities = 49/221 (22%), Positives = 91/221 (41%)

Query:   225 SHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTP 284
             ++ F TK +     +    + P+ + +LG+G +   S    A  +++  G  S  G +  
Sbjct:     2 AYSFGTKPTTSTGFNFSTSATPAVSFSLGSGSTQPFSFTTPASQSSTASGGFSFGGPSVQ 61

Query:   285 STTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSAT-- 342
             ++T+ +    F+ GE KP+ + S L +  S   K+  +SG++F+   +    P S+ T  
Sbjct:    62 TSTSLT---GFSFGESKPAAANSSLGNQPSDASKQPVFSGFSFNTSTA-TIKPTSNITFG 117

Query:   343 NKFTLGKSRASFLDSLNVPRASSGTLFE--QTEPERXXXXXXXXXXXXXXXXXXPAQNPS 400
             +  +   S  +   +  +P +S+G       T+                     PA N  
Sbjct:   118 SNLSANSSFTAISTNAGIPASSAGGFSAPGSTKFSLSTPNSGFSLPALSTGVSLPASNVG 177

Query:   401 --MEKETTG-------AFSKTTTSNIPSAFDYLGNPTVSTS 432
               +   TTG        FS  ++S  P  F++ G P  STS
Sbjct:   178 FGLPASTTGFSLPASTGFSAGSSSQ-PGGFNF-GTPASSTS 216

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0031453 "positive regulation of heterochromatin assembly" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS

GO:0045947 "negative regulation of translational initiation" evidence=ISS

GO:0046832 "negative regulation of RNA export from nucleus" evidence=ISS

GO:0031647 "regulation of protein stability" evidence=ISS

UNIPROTKB|I3LRD3 CENPE "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 0.00098, P = 0.00098
 Identities = 65/289 (22%), Positives = 122/289 (42%)

Query:   512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571
             ++L  ++++  EEIK    E +  +     +++EC+   E  +   ++ I  EE+ L++ 
Sbjct:  1340 HRLTEKLQESHEEIKTITKERDDLKVTKEALQIECDQLKEEIRETLAKHIETEEE-LKVV 1398

Query:   572 SNELKLERQLENXXXXXXXXXXXXXXXXXXRQDFQSTIEALQEEKKMMQSKLRKASGSGK 631
                LK E++ E                   +Q+ + T + LQ++ + ++ K  +   S K
Sbjct:  1399 RGHLK-EKE-ETISKLTVDLSEKATELSSIQQELEMTNDELQKKTQELREKQEQLI-SIK 1455

Query:   632 SIDFGKXXXXXXXXXXXXEDLAITDTTLDNSNQDTHDDAS-LPRIDASGSTLLPESGRLA 690
              I   +            E L   D +L  +  +    A  L        T++ E   L 
Sbjct:  1456 EIS--ETQGKMSELEELKEHLKAKDASLQRTESERLSLAEKLQTSQEEVKTIIKERDELQ 1513

Query:   691 LEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSS-KLKDLNNELSRKLE 749
                 A+    DQ+R   NI  L++E+   +EE  Q    +++++  KL+++ N L ++LE
Sbjct:  1514 RAQEALQKERDQLR--ENIXELVAEIQELQEEEHQLKMKDVSETQEKLREIEN-LKKQLE 1570

Query:   750 HQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEV--VERVL 796
              Q   LE     N   ENI   Q    +  + T+   E D++  VE  L
Sbjct:  1571 AQKSTLE-----NTEMENIRLTQRLHENLEEITSVTKERDDLRSVEETL 1614

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0043515 "kinetochore binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

CGD|CAL0006203 orf19.4906 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:   200 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 258
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:   259 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 317
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   318 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 377
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   378 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 437
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   438 RRLGSNESSIENQHGFYST 456
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

UNIPROTKB|Q5APQ2 CaO19.4906 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:   200 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 258
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:   259 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 317
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   318 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 377
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   378 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 437
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   438 RRLGSNESSIENQHGFYST 456
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	816
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	4e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	1e-05
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	4e-05
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	7e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	1e-04
pfam04156	186	pfam04156, IncA, IncA protein	1e-04
COG3096	1480	COG3096, MukB, Uncharacterized protein involved in	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
pfam13166	713	pfam13166, AAA_13, AAA domain	0.001
PRK10929	1109	PRK10929, PRK10929, putative mechanosensitive chan	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	0.003

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.9 bits (161), Expect = 7e-11
 Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 3/196 (1%)

Query: 434 RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQ---HIEDLTQEKFALQRSLEASRALS 490
              +  L      +E Q      +       LEQ    +E+L +E   L+  LE  +   
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760

Query: 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 550
           E L  E  SL ++  + +  + +L+ + + LQEE++    ELE        +  E  + +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 610
           +R + L  E+  LEE+   L     +LE +LE  + E+   K+++  LE E+++ +  ++
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880

Query: 611 ALQEEKKMMQSKLRKA 626
            L+EEK+ ++ +LR+ 
Sbjct: 881 ELEEEKEELEEELREL 896

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 4e-10
 Identities = 45/166 (27%), Positives = 81/166 (48%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
                 LE+ ++ L  E  +L+  LE  R   E L  +   L          + QL+S +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
           E+L+EE++    ELE  +     +  E  + +E    L  E+  LEEK   L+    +LE
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799

Query: 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624
            +LE ++  + + ++++ SLE+ R+  +  IE L+EE + ++ KL 
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.8 bits (153), Expect = 5e-10
 Identities = 67/344 (19%), Positives = 136/344 (39%), Gaps = 34/344 (9%)

Query: 434  RGDIRRLGSNESSIENQHGFYSTKH---NEDFAALEQHIEDLTQEKFALQRSLEASRALS 490
               I  L    + +E        +     E+   L + +E+L+++  AL++ L    A  
Sbjct: 683  EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 491  ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 550
            E L    + L+    +  + + +L+  +E+ +EE+     E+E    +   ++ E  A  
Sbjct: 743  EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802

Query: 551  ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 610
            E    L +E+  L E+A  LR     LER++  ++  +   +++I  L ++ +   + IE
Sbjct: 803  EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862

Query: 611  ALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD-D 669
             L+E  + ++S+L        S++                +L      L        +  
Sbjct: 863  ELEELIEELESELEALLNERASLEEALALLR--------SELEELSEELRELESKRSELR 914

Query: 670  ASLPRIDASGSTLLPESGRLALEGLAVNIPH--DQMRMIHNINALISELALEKEELVQAL 727
              L  +    + L      L LEGL V I +  +++   +++     E A   E  ++  
Sbjct: 915  RELEELREKLAQL-----ELRLEGLEVRIDNLQERLSEEYSLTL---EEAEALENKIEDD 966

Query: 728  SSELAQSSKLKDLNNELSR----------KLEHQTQRLELLTAQ 761
              E  +  +LK L N++            + E   +R + LTAQ
Sbjct: 967  EEEARR--RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.4 bits (152), Expect = 8e-10
 Identities = 60/314 (19%), Positives = 124/314 (39%), Gaps = 12/314 (3%)

Query: 465 LEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEK 520
           LE+ +E L ++    +R  E    L E     L A+   L     +    +++L+ E+E+
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257

Query: 521 LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 580
           LQEE++    E+E  ++E   +R E     E    L  E+  LE +   LR    +LE +
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 581 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAA 640
           LE  +  +   K+KI +L++E ++ ++ +E L++    ++    +     + +       
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE---EKLSALLEEL 374

Query: 641 STVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPH 700
             +  +   E   +     +  N+       +  ++     L      L  E   +    
Sbjct: 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 701 DQMRM-IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-QTQRLELL 758
           ++++  +  +N  + EL  + EEL   L        +L +L  EL R  +   +    L 
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDRLK---ELERELAELQEELQRLEKELSSLEARLD 491

Query: 759 TAQNMANENISFRQ 772
             +     +   R 
Sbjct: 492 RLEAEQRASQGVRA 505

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 1e-09
 Identities = 42/167 (25%), Positives = 83/167 (49%)

Query: 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 521
             +LE  +E+L ++   L+R LE  +    +L  E   L     +    + +L+ E+E+L
Sbjct: 697 LRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEEL 756

Query: 522 QEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL 581
           QE ++    ELES     A ++ E    +E+ + L  E+  LEE+          LER+L
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816

Query: 582 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628
           E+ +      +++I  LE+E ++ +  ++ L+EE + ++ +L +   
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.9 bits (148), Expect = 2e-09
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
              E  A L++ IE+L +++ ALQ  LE      E       +L            +L+ 
Sbjct: 769 SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ 828

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           E+E+L+EEI+    ELE           + +  +E  + L  E+  L+E+   L + + +
Sbjct: 829 EIEELEEEIE----ELEE----------KLDELEEELEELEKELEELKEELEELEAEKEE 874

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
           LE +L+  + E    ++++  LE E  + +  IE L+E  + +++KL +
Sbjct: 875 LEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 3e-09
 Identities = 56/301 (18%), Positives = 111/301 (36%), Gaps = 43/301 (14%)

Query: 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 517
             E+   L++ +++  +E   L   L+      E L  E S L +   + +  +  L +E
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 518 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL 577
           + +L+++ ++    L +   +     LE    +  +K        L+E A  L   E KL
Sbjct: 297 ISRLEQQKQILRERLANLERQLE--ELEAQLEELESK--------LDELAEELAELEEKL 346

Query: 578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGK 637
           E   E  +S     + ++  LE E ++ +S +E L+E+ + ++SK+ +      S+    
Sbjct: 347 EELKEELESL----EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL---- 398

Query: 638 TAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVN 697
                       E L                +    R+      LL +     L+ L   
Sbjct: 399 -NNEIERLEARLERL----------------EDRRERLQQEIEELLKKLEEAELKELQAE 441

Query: 698 IPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 757
           +          +   + EL  E E L +AL     +  + +   +   R+L     RL+ 
Sbjct: 442 LE--------ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493

Query: 758 L 758
           L
Sbjct: 494 L 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.7 bits (145), Expect = 5e-09
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 18/189 (9%)

Query: 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------QQR 508
           ++  E+   L++ +E+  +E   L+  LE  R   E L  E   L +            R
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308

Query: 509 SVVNQLKSEMEKLQEEIKVQLVELESFRN----------EYANVRLECNAADERAKILAS 558
             + +L++E+E+L+E ++    ++E+ +           E   +  E   A E  +   S
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 559 EVI-GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617
            ++  LEE    LR    +LE +L   ++E+   K++I SLE+  +     +E L+EE K
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428

Query: 618 MMQSKLRKA 626
            ++++L + 
Sbjct: 429 ELEAELEEL 437

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 7/161 (4%)

Query: 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539
           +RS  A +   + L  E + L     +    +  LK+E+  L++ ++    +LE    + 
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 599
             ++ E  A +E  + L S +  LEE+   L     +L+ +LE  + E+ S ++ ++ L+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 600 KE-------RQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 633
           +E       RQ  Q  +E L+EE +  + +L       +S+
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL 819

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.4 bits (139), Expect = 3e-08
 Identities = 39/193 (20%), Positives = 83/193 (43%)

Query: 436 DIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 495
           +I  L    S +  +      +  E    LE+  E +   K  L+        L + LA 
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555
              +  +   +  +++ +L+   E L+EE+     EL   RNE   ++ E  + +ER + 
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615
           L+  +  L+E+   L +   +L+ +LE    E+   ++++  L    ++ +  +  LQEE
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475

Query: 616 KKMMQSKLRKASG 628
            + ++ +L     
Sbjct: 476 LQRLEKELSSLEA 488

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.0 bits (138), Expect = 4e-08
 Identities = 37/165 (22%), Positives = 74/165 (44%)

Query: 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522
           A LE  I+ L  E   L+R +E  R   + L  E + L +     R+ + ++  E  + +
Sbjct: 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384

Query: 523 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 582
           +E+K    +LE  + E   ++ E +   E  + L+ E+  L      + +   +LE + E
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 583 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
           +   EI   + K+  L  +   ++  +  L+EE   ++ +L K  
Sbjct: 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.2 bits (136), Expect = 7e-08
 Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 2/168 (1%)

Query: 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519
           ED ++LEQ IE++  E   L+  +E        L    + L    +  R  + ++++E+ 
Sbjct: 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELS 801

Query: 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579
           KL+EE+      L     +   + LE    ++  + L  + I L+E+   +      L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
           + E  + E+   +  +  LE    D +   + L+ + + ++ K+ +  
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.5 bits (134), Expect = 1e-07
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 21/182 (11%)

Query: 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEME 519
             A+LE+ +E LT+E   L++ LE    L E L  +   L  +   + +  + +L++E+ 
Sbjct: 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304

Query: 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS--NELK- 576
            L+  I  +  ELE      A +  E +      + L  E   +EE+  R      E   
Sbjct: 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE---IEEERKRRDKLTEEYAE 361

Query: 577 LERQLENSQSEI--------------SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 622
           L+ +LE+ ++E+                Y++K+  L++E  + +  ++ LQEE + +  +
Sbjct: 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

Query: 623 LR 624
           L 
Sbjct: 422 LA 423

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 3e-07
 Identities = 35/153 (22%), Positives = 70/153 (45%)

Query: 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522
             L +   +L +E   L+  LE           E     +   + +  +N+LK E+++LQ
Sbjct: 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412

Query: 523 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 582
           EE++    EL       A +  + N  +E  +  A E+   E K  +L ++  K E++L 
Sbjct: 413 EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472

Query: 583 NSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615
           + + E    +K++S L++E  + ++   A +E 
Sbjct: 473 DLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 54.0 bits (130), Expect = 3e-07
 Identities = 60/319 (18%), Positives = 112/319 (35%), Gaps = 24/319 (7%)

Query: 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL- 514
               E  A LE+  E L + K  L           +    E   L     +    + +L 
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294

Query: 515 -----KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569
                  E+E+  E ++  L ELE    +  ++       +E+ + L SE   LEE A  
Sbjct: 295 ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE---LEELAEE 351

Query: 570 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 629
                  LE +L+  +  +   +K++    +  +  +  I+ L+EE   + + L +    
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI--- 408

Query: 630 GKSIDFGKTAASTVNASTS--TEDLAITDTTLDNSNQDTHDDASLPRIDAS----GSTLL 683
            + ++  +     +        E++   +  ++         A L          G  L 
Sbjct: 409 QEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELP 468

Query: 684 PESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKL----KD 739
            E  +  LE   + +   +  +  +     +EL  E EEL + L     +  +L    + 
Sbjct: 469 EEHEKELLELYELELEELEEEL--SREKEEAELREEIEELEKELRELEEELIELLELEEA 526

Query: 740 LNNELSRKLEHQTQRLELL 758
           L  EL  KLE     LE L
Sbjct: 527 LKEELEEKLEKLENLLEEL 545

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 5e-07
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 11/173 (6%)

Query: 456 TKHNEDFAALEQHIEDLTQEKFALQRSL----EASRALSESLAAENSSLTDSYNQQRSVV 511
            +       LEQ + +L + K  L+  L    E    L E+L  E + L     + R+ +
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571
            +LK E+E L+E ++     LE  + E   +  E        + L  E+  LEE+   LR
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459

Query: 572 SNELKLER-------QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617
               +LER       +L+  + E+SS + ++  LE E++  Q     L+  + 
Sbjct: 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 5e-07
 Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 27/216 (12%)

Query: 434  RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESL 493
              ++        ++E +      +       LEQ IE+L +E   L+  L+      E L
Sbjct: 799  EEELEEAERRLDALERELESLEQRRER----LEQEIEELEEEIEELEEKLDELEEELEEL 854

Query: 494  AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---QLVELESFRNEY----ANVRLEC 546
              E   L +   +  +   +L+ E+++L+EE +    +L ELES   E       +R   
Sbjct: 855  EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914

Query: 547  NAADERAKILASEVIGLEEKALRLRSNEL--KLERQLENSQSEISSY------------- 591
               + + + L  E+  LEE+      + L  +LER++E  + EI +              
Sbjct: 915  EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEE 974

Query: 592  -KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
             +++   L+ +R+D +   E L E  + +  + R+ 
Sbjct: 975  VEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 52.8 bits (127), Expect = 6e-07
 Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 22/201 (10%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           K  E++  L++ +  L  E  +L++ LE    L + LA     L +   +   ++ +L+ 
Sbjct: 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581

Query: 517 EMEKLQEEIKVQLVELESFRNEY---ANVRLECNAADERAKILASEV------IGLEEKA 567
              +  EE++ +L ELE F NEY    +   E    ++  K L  E+      +   EK 
Sbjct: 582 LGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKR 641

Query: 568 LRLRSNEL-------------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614
           L     EL             +L  +      E++  + ++  LEK R++ + T+E L+E
Sbjct: 642 LEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701

Query: 615 EKKMMQSKLRKASGSGKSIDF 635
           E +  +   ++     K+++ 
Sbjct: 702 ELEEREKAKKELEKLEKALER 722

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 27/159 (16%), Positives = 63/159 (39%)

Query: 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525
            + IE+L ++   L+  +         L  E   L +   Q R  + +L  ++  L++++
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 526 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 585
                E+E      A +  E    +   + L   +   EE+     +   +LE Q+E  +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624
            E+ + ++ +  L  E          L+E  + ++ ++ 
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 82/435 (18%), Positives = 153/435 (35%), Gaps = 62/435 (14%)

Query: 200 QGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFH 259
           +   E+ SKG  S  ++  + NSG +H      S  +    L  S+        + H  H
Sbjct: 214 KEKSEASSKGLTSTKELVPVQNSGGNHS--LSKSSNSQTPELEYSEKGKDHHHSHNHQHH 271

Query: 260 SSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKR 319
           S      H   +       + +   + +N S P S +T   K + S S  A+  S   K 
Sbjct: 272 SIGINNHHSKHADSKL-QTIEVIE-NHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKS 329

Query: 320 SEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSF 379
           S+                 S+  +      S      S N    SS     +++ +R S 
Sbjct: 330 SK-----------------SAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASK 372

Query: 380 MSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRR 439
            SS + +S        A             S       PSA + L           DI++
Sbjct: 373 SSSGARDSKKDASGMSANGTVENCIPENKIST------PSAIERL---------EQDIKK 417

Query: 440 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS 499
           L +                 ++ + L   I  LT  + +L+  L   +  ++ L  + +S
Sbjct: 418 LQAELQQ-----------ARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNS 466

Query: 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 559
           +  +  + +  +  ++   ++L+ E   + V  E    E    + E      RA   A+ 
Sbjct: 467 MVSAKQKDKQSMQSME---KRLKSEADSR-VNAEKQLAEEKKRKKEEEETAARAAAQAAA 522

Query: 560 VIGLEEKALRLRSNEL-----KLERQLENSQSEISSYKKKISSL------EKERQDFQST 608
                 ++L+    +L     KLE  L+  + E    +K+   L      EKE +   S 
Sbjct: 523 SREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKETEVLMSA 582

Query: 609 IEALQEEKKMMQSKL 623
           ++A+Q++  M+++ L
Sbjct: 583 LQAMQDKNLMLENSL 597

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 44/253 (17%), Positives = 104/253 (41%), Gaps = 11/253 (4%)

Query: 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572
           +L+ ++E+L+E+I      L   R E   +  E     +  + L+ ++  L +   RL +
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 573 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 632
              +LE ++     E++  + +I  LE+  ++ +  +   + E + +++++ +     K+
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800

Query: 633 IDFGKTAASTVNASTSTEDLAITDTTLD-NSNQDTHDDASLPRIDASGSTLLPESGRLAL 691
           +   + A   + A  +  +    +      S +           D        E     +
Sbjct: 801 L---REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI---EELSEDI 854

Query: 692 EGLAVNIPH--DQMRMIHN-INALISELALEKEELVQALSSELAQSSKLKDLNNELSRKL 748
           E LA  I    + +  + + + AL++E A  +E L    S     S +L++L ++   +L
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR-SEL 913

Query: 749 EHQTQRLELLTAQ 761
             + + L    AQ
Sbjct: 914 RRELEELREKLAQ 926

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.9 bits (117), Expect = 1e-05
 Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 29/197 (14%)

Query: 459 NEDFAALEQHIEDLTQ-EKFALQR---SLEASRALSE-SLAAENSSLTDSYNQQR---SV 510
            +    L + I+DL + E+  ++     LEA  A  E S+A +   L D+  +     + 
Sbjct: 271 EQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330

Query: 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570
           +++L +E+E+L+ EI+ +    +    EYA ++ E          L +E+  ++++    
Sbjct: 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED-------LRAELEEVDKEFAET 383

Query: 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQ--------------DFQSTIEALQEEK 616
           R        +LE  + EI+  K+++  L++E Q                ++ I  L+EEK
Sbjct: 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443

Query: 617 KMMQSKLRKASGSGKSI 633
           +    +++K     + +
Sbjct: 444 EDKALEIKKQEWKLEQL 460

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 48.8 bits (117), Expect = 1e-05
 Identities = 61/311 (19%), Positives = 123/311 (39%), Gaps = 60/311 (19%)

Query: 470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529
           + L  E   +Q+ LE + AL + +  +         QQ   + Q  +++ + Q E++   
Sbjct: 52  KLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQ-LKQQ---LAQAPAKLRQAQAELE--- 104

Query: 530 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER---QLENSQS 586
                         L+ +  +E  + L++         L LR  E +L +   QL+N+Q+
Sbjct: 105 -------------ALKDDNDEETRETLST---------LSLRQLESRLAQTLDQLQNAQN 142

Query: 587 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNAS 646
           +++ Y  ++ SL+ + +  Q+ + A    +++ Q +     G        K     +  S
Sbjct: 143 DLAEYNSQLVSLQTQPERAQAALYANS--QRLQQIRNLLKGG--------KVGGKALRPS 192

Query: 647 TSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMI 706
                L      L+  N        L R    G+T L +  +   + L   I   +   +
Sbjct: 193 QRVL-LQAEQALLNAQN-------DLQRKSLEGNTQLQDLLQKQRDYLTARIQRLE-HQL 243

Query: 707 HNINALISE--LALEKEELVQALSSELAQSSKLKDL-------NNELSRKLEHQTQRLEL 757
             +   I+   L L ++ + +A S + A   +   L       N +LS++L   T++L  
Sbjct: 244 QLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNT 303

Query: 758 LTAQNMANENI 768
           LT QN+  +N 
Sbjct: 304 LTQQNLRVKNW 314

Length = 1113

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542
           L++  A+ + L  E   L     + R  + + K+E+E L + ++   +ELE   N+ +  
Sbjct: 6   LKSLLAIQK-LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS-- 62

Query: 543 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER 602
           +LE    + R +I          K    + + +K ER+L     EI   K++I+SLE E 
Sbjct: 63  QLESEIQEIRERI----------KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112

Query: 603 QDFQSTIEALQEEKKMMQSKLRK 625
            +    IE L++E + ++ +L +
Sbjct: 113 AELMEEIEKLEKEIEDLKERLER 135

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.8 bits (114), Expect = 3e-05
 Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 437 IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 496
           I+ LG  E  +  +      +   + A+LE+ I +  +E    +  L    A  + L AE
Sbjct: 281 IKDLGEEEQ-LRVKEKIGELE--AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337

Query: 497 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556
              L     ++R   ++L  E  +L+EE++    ELE    E+A  R E     E+ + L
Sbjct: 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397

Query: 557 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616
             E+  L+ +  RL+    +L  +L +  + I+  + KI+ LE+E++D    I+  + + 
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 617 KMMQSKLRKAS 627
           + + + L K  
Sbjct: 458 EQLAADLSKYE 468

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525
           E   E+  +E    ++ ++      E L  ENS L     + +  + +L+SE+E+ + E+
Sbjct: 407 EGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466

Query: 526 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 585
           + ++ +             E  A D R + L  E   LEEK  R+   E KL    +  +
Sbjct: 467 RDKVRK-----------DREIRARDRRIERLEKE---LEEKKKRVEELERKLAELRKMRK 512

Query: 586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK---LRKASGSGKSI 633
            E+S     +  +EK   +    IE  +EE  + +     +   SG G   
Sbjct: 513 LELSGKGTPVKVVEKLTLE---AIEEAEEEYGIKEGDVILVEDPSGGGART 560

Length = 652

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 4e-05
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 14/161 (8%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
              E+   LE+ +E+  +   AL+R LE+     E L  E   L +   +       L+ 
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE-------LEE 842

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           ++++L+EE+       E    E   ++ E    +   + L  E+  LEE+   L     +
Sbjct: 843 KLDELEEEL-------EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617
           LE +L   + EI   ++++  LE + +  +  +  L+EE +
Sbjct: 896 LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Length = 1163

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 46.5 bits (111), Expect = 4e-05
 Identities = 37/209 (17%), Positives = 87/209 (41%), Gaps = 43/209 (20%)

Query: 430 STSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIED----LTQEKFALQRSLEA 485
           +T    D   L S    +E +            A  +  IE     L+ E  A+   ++ 
Sbjct: 76  ATDVEADAAELESQVLRLEAEVARLRA-----EADSQAAIEFPDDLLSAEDPAVPELIKG 130

Query: 486 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545
            ++L     +  S+L       R+ +  + +++++L+ E+     +L++ R         
Sbjct: 131 QQSL---FESRKSTL-------RAQLELILAQIKQLEAELAGLQAQLQALR--------- 171

Query: 546 CNAADERAKILASEVIG---LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE- 601
                ++ ++++ E+     L+EK L  R   L+LER+   +Q E+   + ++  L+++ 
Sbjct: 172 -----QQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQI 226

Query: 602 ---RQDFQSTIEALQEEKKMMQSKLRKAS 627
              + + Q   +  +EE   +  +L +A 
Sbjct: 227 DELQLERQQIEQTFREE---VLEELTEAQ 252

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 12/112 (10%)

Query: 504 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 563
           + ++  ++ Q + E+EK +EE++  L++ + F  E    R     A+++A+         
Sbjct: 23  FERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKR---RRAEKKAEE-------- 71

Query: 564 EEKALRLRSNELK-LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614
           E+K  + +  E+K L+ +LE  ++EI   ++K+   +   +  +S +E   E
Sbjct: 72  EKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQPYEEFLESVVERSPE 123

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 9e-05
 Identities = 30/169 (17%), Positives = 74/169 (43%), Gaps = 1/169 (0%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           K  E+ + +E  + ++ Q+   L    E      + L  +   L +        +  L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           + E+L+EE++     L    +   +++ E +  + + + L  ++  LE +  + R    +
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
           L+ +LE  + E+S  +      E+  ++  S +E +Q E + ++ ++R 
Sbjct: 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEIRA 969

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 460  EDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 515
            +D+   +Q   D  Q+ FAL    QR    S   +  + A+NS L +   Q+      L+
Sbjct: 942  QDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQR------LE 995

Query: 516  SEMEKLQEEIKVQLVELESFRNEYANVRL----ECNAADERAKILASEV--IGL-----E 564
             + E+ +   + QL + ++   +Y  V        +A  +  + L  E+  +G+      
Sbjct: 996  -QAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGA 1054

Query: 565  EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615
            E+  R R +EL    +L  ++S  +  +K+++  E E  +    +  L+ +
Sbjct: 1055 EERARARRDEL--HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERD 1103

Length = 1486

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538
           L           + L      L++   Q    +++L+ E+E L+E I     ELE  + +
Sbjct: 60  LLLKAPVQSVRPQKLEELQGELSELKQQ----LSELQEELEDLEERIAELESELEDLKED 115

Query: 539 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 598
              +R    + +ER + L   +  L ++   LR     L  ++E  + E+   ++ +  L
Sbjct: 116 LQLLRELLKSLEERLESLEESIKELAKELRELRQ---DLREEVEELREELERLQENLQRL 172

Query: 599 EKERQDFQSTIE 610
           ++  Q+ QS +E
Sbjct: 173 QEAIQELQSLLE 184

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 460  EDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 515
            ED+A  +Q      Q+ FAL    QR    S + S  + +ENS L +   + R  + Q +
Sbjct: 941  EDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNE---KLRQRLEQAE 997

Query: 516  SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI--------GLEEKA 567
            +E  + +E+++    +L  +    A+++   +   E    L  E+         G EE+A
Sbjct: 998  AERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERA 1057

Query: 568  LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
             R+R +EL    QL  ++S  +  +K+++  E E  +    +  L+ +   M+ ++  A 
Sbjct: 1058 -RIRRDEL--HAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAK 1114

Query: 628  GS 629
              
Sbjct: 1115 AG 1116

Length = 1480

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 514
           S     +   L + +E L +E  +LQ  L       + L+ E S  +    +    + QL
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728

Query: 515 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 574
           + E EKL+E ++    +L S   E  NV+ E        K L + +  LEE   +L    
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSE-------LKELEARIEELEEDLHKLEEAL 781

Query: 575 LKLER-----QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 622
             LE      ++   Q+E+S  ++++S +E   ++ +  +  L  EK+ ++ +
Sbjct: 782 NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 42/318 (13%)

Query: 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572
              +E+++L+E ++    EL S ++E   +    +   +     + ++  +E++  +L  
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

Query: 573 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR--KASGSG 630
            E KL+ +LE  + ++SS +++I +++ E ++ ++ IE L+E+   ++  L   +A  S 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 631 KSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA 690
             I   +   S +    S  +  + +            +  L R      TL  E     
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREI-----------EQKLNR-----LTLEKEYLEKE 834

Query: 691 LEGLAVNIPHDQMRM------IHNINALISELALEKEEL---VQALSSEL---------- 731
           ++ L       + ++      I N+N    EL  E EEL   ++ L S L          
Sbjct: 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894

Query: 732 -AQSSKLKDLNNELSRKLEHQTQRLELLTA--QNMANENISFRQPDSASTHDHTAYADEG 788
            AQ  +L+    EL  ++E + +RL  L A  + +  E      P               
Sbjct: 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954

Query: 789 D--EVVERVLGWIMKLFP 804
           D    ++RV   I  L P
Sbjct: 955 DVQAELQRVEEEIRALEP 972

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 13/168 (7%)

Query: 463  AALEQHIEDLTQEKFALQRSLE----ASRALSES---LAAENSSLTDSYNQQRSVVNQLK 515
             ++E+ IE+L  +K  L+  LE    A R L      L  E   L     +    + +L+
Sbjct: 850  KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

Query: 516  SEMEKLQEEIKVQLVELESFRNEYANVR------LECNAADERAKILASEVIGLEEKALR 569
            +++EK ++ +     +LE+   E + +        E    +   + + +E+  +EE+   
Sbjct: 910  AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969

Query: 570  LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617
            L    +   ++ E     +   K+K + LE+ER+     IE  +++K+
Sbjct: 970  LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 5e-04
 Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 21/187 (11%)

Query: 460 EDFAALEQHIEDLTQ-------EKFALQRSLEASRALSESLAAENSSLTDSY---NQQRS 509
           E+   LE  IEDL +       E+  L   +   R   E L  E   L       +    
Sbjct: 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAE 310

Query: 510 VVNQLKSEMEK----LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565
            V   + E+E     L++ ++   V  ++   E  ++R + +  +ERA+        L E
Sbjct: 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE-------ELRE 363

Query: 566 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
           +A  L S   +    +E+ + EI   +++I  L +   D    +   ++  + ++ +  +
Sbjct: 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423

Query: 626 ASGSGKS 632
                  
Sbjct: 424 LREREAE 430

Length = 880

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLE-----CNAADERAKILASEVIGLEEKALRLR 571
           E E+ Q+E++ ++ ++E      A   LE         +E+ K    E   LE+KA  L 
Sbjct: 2   EAEREQQELEERMEQMEE-DMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELE 60

Query: 572 SNELKLERQLENS-------QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624
               +LE +   S       ++E+     +++ LE+ER+  ++    LQ+E +  Q    
Sbjct: 61  EENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHE 120

Query: 625 KASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRID 676
           +A           TA   V A  + E L   D   + S  D   D  +    
Sbjct: 121 RARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEAS-ADLETDPDMKDRS 171

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 42/252 (16%), Positives = 100/252 (39%), Gaps = 41/252 (16%)

Query: 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566
           Q+  + +L+ E+ +L+ +++    EL+S +NE  ++         + + L  ++  L+ +
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724

Query: 567 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
              L     +L+ +LE  + E+   ++++  L++  ++ +  +E+L+E    ++ ++ + 
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784

Query: 627 SGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES 686
               +++                E+L   +  L+ + +          ++    +L    
Sbjct: 785 EEKRQAL---------------QEELEELEEELEEAERRLDA------LERELESLEQRR 823

Query: 687 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR 746
            RL  E                    I EL  E EEL + L     +  +L+    EL  
Sbjct: 824 ERLEQE--------------------IEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Query: 747 KLEHQTQRLELL 758
           +LE      E L
Sbjct: 864 ELEELEAEKEEL 875

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 18/251 (7%)

Query: 536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 595
           R E   +  +    +E+   L   +  L ++   L     +L ++LE    +IS+ +K +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 596 SSLEKERQ-------DFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTS 648
           + LE E +            +  L+ E + ++ +L +A       +              
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ-IEQL 794

Query: 649 TEDLAITDTTLDNSN---QDTHDDASLPRIDASGSTLLPESGRLALEGLA---VNIPHDQ 702
            E+L      LD         +++A+  R           +    LE L      +  D 
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 703 MRMIHNINAL---ISELALEKEELVQALSSELAQSSKLKDLNNELSRKL-EHQTQRLELL 758
             +   I  L   I EL  E E L+   +S     + L+    ELS +L E +++R EL 
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 759 TAQNMANENIS 769
                  E ++
Sbjct: 915 RELEELREKLA 925

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 29/188 (15%)

Query: 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 517
             +      + +ED  QE   L+  LE  R L          L +   + +  + +L+  
Sbjct: 553 QLQQLKEELRQLEDRLQE---LKELLEELRLLRTRKEELEE-LRERLKELKKKLKELEER 608

Query: 518 MEKLQEEIKVQLV-----ELESFRNEYANVR--LECNAADERAKI------------LAS 558
           + +L+E ++   +     ELE    E  +    L   A  E                L +
Sbjct: 609 LSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEA 668

Query: 559 EVIGLEEKALRL------RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612
           E+    ++               +LE +LE  + E+    KK+  +E+  ++ +S    L
Sbjct: 669 EIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAEL 728

Query: 613 QEEKKMMQ 620
           +E KK ++
Sbjct: 729 EELKKELE 736

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 437 IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 496
            ++L   E  +            E    LE+ +++L  E F     LE   A  E    E
Sbjct: 562 EKKLDELEEELAELLKELEELGFESVEELEERLKEL--EPF-YNEYLELKDAEKELEREE 618

Query: 497 NS--SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN--EYANVRLECNAADER 552
                L +  ++    + + +  +E+L++E++    ELE   +  EY  +R E       
Sbjct: 619 KELKKLEEELDKAFEELAETEKRLEELRKELE----ELEKKYSEEEYEELREEYLELSRE 674

Query: 553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612
              L +E+  LE++   ++    KL+ +LE    E    KK++  LEK  +  +   E +
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKLKEELE----EREKAKKELEKLEKALERVEELREKV 730

Query: 613 QEEKKM 618
           ++ K +
Sbjct: 731 KKYKAL 736

Length = 880

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 36/201 (17%), Positives = 86/201 (42%), Gaps = 27/201 (13%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
           +E++  L + +E+L  +    +  +E +    ES+       ++        V +LK+ +
Sbjct: 277 DEEYQELIEQLEELIDK---YESHIEKALEELESILDTEKENSEFKLD----VEELKALL 329

Query: 519 EKLQEEIKV-------------QLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565
           E L+E ++                +ELES  +   ++    +A +E  +    ++  L++
Sbjct: 330 EALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKK 389

Query: 566 KALRLRSNELKLERQLENS-QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624
           +  + +    KL   L    + +I +Y+K+   LEK     +  I+ L+ E K ++ +++
Sbjct: 390 EKNKAKK---KLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIK 446

Query: 625 KASGSGKSIDFGKTAASTVNA 645
           +      +I   +  A  +N 
Sbjct: 447 ELEKQLTNI---EPTADEINK 464

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 714 SELALEKEELVQALSSELAQS-SKLKDLNNELSRKLEHQTQRLELLTAQN--MANENISF 770
           +E ALE  EL+   S +L +S      +N ELS+ L  Q QR++L+ +Q    A++ +  
Sbjct: 239 AERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQV 298

Query: 771 RQ 772
           RQ
Sbjct: 299 RQ 300

Length = 1109

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 34/178 (19%)

Query: 438 RRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN 497
           +RLG  E+ IE           +    L + I  L      L+R LE             
Sbjct: 495 KRLGLPENIIEEAKKLIGEDKEK----LNELIASLE----ELERELE------------- 533

Query: 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES-FRNEYANVRLECNAADERAKIL 556
                   Q+      L  E EKL+EE++ +  +L+            E   A + AK  
Sbjct: 534 --------QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585

Query: 557 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614
           A E+I    K LR          +            K     EK+++  +   E L+ 
Sbjct: 586 ADEII----KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639

Length = 782

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 53/274 (19%), Positives = 108/274 (39%), Gaps = 40/274 (14%)

Query: 511 VNQLKSEMEKLQEEI--------KVQLVELESFRNEYANVRLECNAADERAKILASEVIG 562
           V +   + EK  EE+        ++ L+ ++  R +   +R E   A ER + L  E   
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLI-IDEKRQQLERLRREREKA-ERYQALLKE--- 219

Query: 563 LEEKALRLRSNELK-LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 621
             E        E + LERQ E  + +++S ++++  L +E  + +  +E +++  + +  
Sbjct: 220 KREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279

Query: 622 KLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD-DASLPRIDASGS 680
           K+ K  G  + +   +             ++A  + ++    ++  D +  L +++A   
Sbjct: 280 KI-KDLGEEEQLRVKEKIGEL------EAEIASLERSIAEKERELEDAEERLAKLEAEID 332

Query: 681 TLLPESGRLALEGLAVNIPHDQMRMIHNINALIS-------------ELALEKEELVQAL 727
            LL E     +E L   I  ++ R                       E+  E  E    L
Sbjct: 333 KLLAE-----IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387

Query: 728 SSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 761
                +  KLK   NEL R+L+   + L+ L+ +
Sbjct: 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 30/204 (14%)

Query: 442 SNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE----- 496
           S E S E Q    ST   +D   L Q   +LT +   L+    A     E L A      
Sbjct: 604 SRELSPEQQLDILSTM--KDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQF 661

Query: 497 ------------NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544
                         +      + R  +       ++L +E++    ELE  R E  ++  
Sbjct: 662 IDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELR---AELELHRKEILDL-F 717

Query: 545 ECNAADERAKILASEVIGLEEKALRLRSNELK-LERQLENSQS---EISSYKKKISSLEK 600
           +C  AD             EE+ L  R + L+ LE QLE   +   E+S+   +    E+
Sbjct: 718 DCGTADTEDAFRE---AAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEE 774

Query: 601 ERQDFQSTIEALQEEKKMMQSKLR 624
           E    +  I+AL EE + + +++ 
Sbjct: 775 ELALLEEAIDALDEEVEELHAQVA 798

Length = 984

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	816
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.15
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.04
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.97
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.88
PRK02224	880	chromosome segregation protein; Provisional	97.85
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.61
PRK02224	880	chromosome segregation protein; Provisional	97.49
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.49
PRK11637	428	AmiB activator; Provisional	97.43
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.32
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.32
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.23
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.11
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.09
PRK11637	428	AmiB activator; Provisional	97.03
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.99
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.98
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.96
PHA02562	562	46 endonuclease subunit; Provisional	96.95
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.82
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.79
PHA02562	562	46 endonuclease subunit; Provisional	96.78
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.71
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.65
PRK09039	343	hypothetical protein; Validated	96.59
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.56
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.48
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.43
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.43
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.42
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.39
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.37
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.32
PRK03918	880	chromosome segregation protein; Provisional	96.28
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.2
PRK03918	880	chromosome segregation protein; Provisional	96.18
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.15
PRK04778	569	septation ring formation regulator EzrA; Provision	96.12
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.09
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.09
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	96.03
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.94
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.89
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.87
PRK04863	1486	mukB cell division protein MukB; Provisional	95.79
PRK09039	343	hypothetical protein; Validated	95.68
PRK10361	475	DNA recombination protein RmuC; Provisional	95.66
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	95.62
PRK04778	569	septation ring formation regulator EzrA; Provision	95.61
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.56
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.56
PRK04863	1486	mukB cell division protein MukB; Provisional	95.48
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.39
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.37
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.33
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.29
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	95.28
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.15
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	95.13
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.02
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.88
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.85
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	94.81
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.75
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	94.74
KOG0933	1174	consensus Structural maintenance of chromosome pro	94.73
COG4372	499	Uncharacterized protein conserved in bacteria with	94.67
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.61
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.59
KOG0979	1072	consensus Structural maintenance of chromosome pro	94.58
PF13166	712	AAA_13: AAA domain	94.54
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.5
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.49
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.46
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	94.39
KOG0971	1243	consensus Microtubule-associated protein dynactin	94.3
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	94.26
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.12
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.05
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.92
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	93.87
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.83
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.78
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.72
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	93.68
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	93.67
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	93.64
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	93.62
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	93.57
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.55
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.32
PF13514	1111	AAA_27: AAA domain	93.31
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	93.3
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.27
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.23
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	93.23
KOG1103	561	consensus Predicted coiled-coil protein [Function	93.22
KOG0971	1243	consensus Microtubule-associated protein dynactin	93.17
PRK11281	1113	hypothetical protein; Provisional	93.01
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	92.95
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	92.78
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	92.76
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	92.72
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	92.67
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	92.66
KOG4673	961	consensus Transcription factor TMF, TATA element m	92.63
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	92.56
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	92.55
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	92.53
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	92.49
PRK10476	346	multidrug resistance protein MdtN; Provisional	92.44
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	92.41
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	92.4
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	92.31
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	92.25
PF13514	1111	AAA_27: AAA domain	92.09
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	92.05
cd07647	239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	92.04
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	91.77
PRK11281	1113	hypothetical protein; Provisional	91.66
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	91.6
KOG4673	961	consensus Transcription factor TMF, TATA element m	91.54
PRK01156	895	chromosome segregation protein; Provisional	91.54
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.48
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	91.2
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	91.19
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	91.11
PLN03188	1320	kinesin-12 family protein; Provisional	91.02
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.0
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.6
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.56
KOG0964	1200	consensus Structural maintenance of chromosome pro	90.55
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.44
PRK11519	719	tyrosine kinase; Provisional	90.36
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.26
cd07671	242	F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin	90.24
KOG0996	1293	consensus Structural maintenance of chromosome pro	90.21
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	90.12
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	90.09
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	90.01
cd07655	258	F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/	89.88
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.86
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	89.84
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	89.68
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	89.62
PF14662	193	CCDC155: Coiled-coil region of CCDC155	89.6
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	89.59
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	89.49
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	89.49
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	89.47
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.12
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.03
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	88.97
COG4942	420	Membrane-bound metallopeptidase [Cell division and	88.79
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	88.74
KOG0288	459	consensus WD40 repeat protein TipD [General functi	88.56
KOG0249	916	consensus LAR-interacting protein and related prot	88.56
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	88.45
PRK10246	1047	exonuclease subunit SbcC; Provisional	88.45
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	88.22
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	88.14
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	88.07
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	88.03
PRK10929	1109	putative mechanosensitive channel protein; Provisi	87.97
PRK10884	206	SH3 domain-containing protein; Provisional	87.85
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	87.79
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	87.31
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	87.3
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	87.29
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	87.16
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	87.1
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	87.01
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	86.99
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	86.96
PF05546	207	She9_MDM33: She9 / Mdm33 family; InterPro: IPR0088	86.94
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.84
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	86.8
PRK10246	1047	exonuclease subunit SbcC; Provisional	86.7
PRK10361	475	DNA recombination protein RmuC; Provisional	86.64
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	86.46
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	86.15
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	86.13
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	86.11
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	86.05
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.03
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	85.94
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	85.48
KOG1962	216	consensus B-cell receptor-associated protein and r	85.25
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	84.95
PRK03598	331	putative efflux pump membrane fusion protein; Prov	84.92
PRK10884	206	SH3 domain-containing protein; Provisional	84.77
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	84.75
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	84.54
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	84.47
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	84.46
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	84.42
PF13166	712	AAA_13: AAA domain	84.27
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	84.26
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	83.9
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	83.32
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	83.25
COG2433	652	Uncharacterized conserved protein [Function unknow	83.24
TIGR02473	141	flagell_FliJ flagellar export protein FliJ. Member	83.19
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	83.09
cd07649	233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	82.93
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	82.7
KOG0964	1200	consensus Structural maintenance of chromosome pro	82.57
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	82.54
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	82.49
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	82.42
TIGR02231	525	conserved hypothetical protein. This family consis	82.37
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	82.24
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.91
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	81.9
cd07658	239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	81.6
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	81.2
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	81.07
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	81.04
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	80.48
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	80.45

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.15  E-value=0.0027  Score=73.27  Aligned_cols=165  Identities=18%  Similarity=0.318  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (816)
Q Consensus       460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr  539 (816)
                      .+...|++.++++..+--.+...+.....-.+++..+-..+..........+..++.++++++.++......++.+..+.
T Consensus       677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~  756 (1179)
T TIGR02168       677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL  756 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555444555444444444444444444555555555554444444444444444


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 003487          540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  619 (816)
Q Consensus       540 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklL  619 (816)
                      .....+.....++...+-.++-.|++++..++...-.++.+++.+..++..++.++..+..+...++..+..++.+.+.+
T Consensus       757 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l  836 (1179)
T TIGR02168       757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT  836 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444443333322223334444444444444444444444444444444444444444


Q ss_pred             HHHHH
Q 003487          620 QSKLR  624 (816)
Q Consensus       620 qskLR  624 (816)
                      +.++.
T Consensus       837 ~~~~~  841 (1179)
T TIGR02168       837 ERRLE  841 (1179)
T ss_pred             HHHHH
Confidence            43333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.04  E-value=0.0062  Score=70.43  Aligned_cols=156  Identities=21%  Similarity=0.292  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003487          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (816)
Q Consensus       461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd  540 (816)
                      +...|++.++++..+.-.+...++..+.-.+.+-.+-..+...++.....+..++.++++++.++......++.+..+.+
T Consensus       685 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~  764 (1179)
T TIGR02168       685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE  764 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555544444444444444444555555555555555555555544444444444444444


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487          541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (816)
Q Consensus       541 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK  616 (816)
                      ..+.+...+.+.-..+..++..+++++..++...-.++.++..++.++..++.++..++.....++..+..++++.
T Consensus       765 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~  840 (1179)
T TIGR02168       765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL  840 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444333333333333333333333333333333333333333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.97  E-value=0.018  Score=67.22  Aligned_cols=47  Identities=15%  Similarity=0.172  Sum_probs=29.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003487          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  506 (816)
Q Consensus       460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq  506 (816)
                      .++..++..+++++.+.-.+...++....-.+.+-.+-..+...++.
T Consensus       237 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  283 (1164)
T TIGR02169       237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD  283 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555566666666666666666666666556665555555555555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.88  E-value=0.0027  Score=73.82  Aligned_cols=7  Identities=29%  Similarity=0.534  Sum_probs=3.2

Q ss_pred             cccccccc
Q 003487          687 GRLALEGL  694 (816)
Q Consensus       687 G~~~l~g~  694 (816)
                      |.| .||.
T Consensus       653 G~~-tgG~  659 (1164)
T TIGR02169       653 GAM-TGGS  659 (1164)
T ss_pred             cCc-cCCC
Confidence            444 4554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=97.85  E-value=0.021  Score=66.37  Aligned_cols=76  Identities=17%  Similarity=0.241  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003487          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY-------NQQRSVVNQLKSEMEKLQEEIKVQLVELE  533 (816)
Q Consensus       461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~y-------NqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le  533 (816)
                      ++..|++.|.++..+.-.+...+.......+.|-.+.+.|....       ........+|..+.+.|+.++......+.
T Consensus       259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~  338 (880)
T PRK02224        259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ  338 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555544444455555555554444444444433322       22222334455555555555544444443


Q ss_pred             hhH
Q 003487          534 SFR  536 (816)
Q Consensus       534 ~l~  536 (816)
                      .+.
T Consensus       339 ~~~  341 (880)
T PRK02224        339 AHN  341 (880)
T ss_pred             HHH
Confidence            333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.61  E-value=0.089  Score=64.11  Aligned_cols=48  Identities=27%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 003487          704 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ  751 (816)
Q Consensus       704 RmI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~q  751 (816)
                      ..+.++++-|.++..+++.+-..|+.......+++.....+..++...
T Consensus       870 ~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l  917 (1163)
T COG1196         870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL  917 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677777777777777777777777777777777777777666643

>PRK02224 chromosome segregation protein; Provisional

Probab=97.49  E-value=0.017  Score=66.98  Aligned_cols=156  Identities=19%  Similarity=0.268  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003487          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (816)
Q Consensus       461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd  540 (816)
                      +.+.|+..|+++..++-.+...+..+.++. .|...-+.+.+..+.....+.......+.|++++..-...+.....+++
T Consensus       483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~-~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~  561 (880)
T PRK02224        483 ELEDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA  561 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555554444444444333332 3333334444445555555555566666666666666666666666667


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 003487          541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ  620 (816)
Q Consensus       541 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLq  620 (816)
                      .+..+..++.++...+..++-.|+.+.-++. .       +..+..++...+..+..++.++..+....+.++++..-+.
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~-------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r  633 (880)
T PRK02224        562 EAEEEAEEAREEVAELNSKLAELKERIESLE-R-------IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKR  633 (880)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777788888888888877777664 3       3333334444444444444444444444445555555555


Q ss_pred             HHHHh
Q 003487          621 SKLRK  625 (816)
Q Consensus       621 skLRk  625 (816)
                      .++..
T Consensus       634 ~~i~~  638 (880)
T PRK02224        634 ERKRE  638 (880)
T ss_pred             HHHHH
Confidence            55553

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.49  E-value=0.044  Score=70.00  Aligned_cols=238  Identities=24%  Similarity=0.330  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 003487          483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------QLVELESFRNEYANVRLECNAADERAKI  555 (816)
Q Consensus       483 L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a-------Q~~~le~l~aErdaArle~~aA~ERak~  555 (816)
                      ++.+.++-+.|..+...+-..+..-...+.++++....|+.+...       -...++.+-..|+.++++.+++..+-+.
T Consensus       889 ~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~  968 (1930)
T KOG0161|consen  889 LAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKN  968 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556666666666666666666666655544444433333       3333444455566788888888888888


Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhHHHHh----hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH----HHHHH---HHHHHH
Q 003487          556 LASEVIGLEEKALRLRSNELKLERQLE----NSQSEISSYKKKISSLEKERQDFQSTIEALQ----EEKKM---MQSKLR  624 (816)
Q Consensus       556 LAaEVV~LEEk~l~LRS~ELKlerele----~l~~E~~s~~rqlsslekeR~~lqsti~ALQ----EEKkl---LqskLR  624 (816)
                      |-.|+..|++.+-.|    .|..|+++    .+...+-..+.++..+.|-...|...++-|+    +|++.   +....|
T Consensus       969 l~~e~~~~~e~~~kL----~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~r 1044 (1930)
T KOG0161|consen  969 LEEEINSLDENISKL----SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKR 1044 (1930)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887755    33333333    3556666677777777777777776666554    33333   333334


Q ss_pred             hhcCCCCccCCCCCcccccccccccccccccCccccCCCCCCccCCCCCcCCCCCCCCCCcccccccccccccchhhHHH
Q 003487          625 KASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMR  704 (816)
Q Consensus       625 ka~~~gk~~~~~kns~~~kDASTSTdDLai~dd~~~sSn~etlds~s~~s~~~s~~pllpe~G~~~l~g~~vsIp~DQlR  704 (816)
                      ++-+.-+...   .+  -.+.-..-++|    +..     .  ...   .         .+-|++      -.-.+|.-+
T Consensus      1045 kle~el~~~~---e~--~~~~~~~~~el----~~~-----l--~kk---e---------~El~~l------~~k~e~e~~ 1090 (1930)
T KOG0161|consen 1045 KLEGELKDLQ---ES--IEELKKQKEEL----DNQ-----L--KKK---E---------SELSQL------QSKLEDEQA 1090 (1930)
T ss_pred             HHHHHHHHhh---hH--HHHHHHHHHHH----HHH-----H--HHH---H---------HHHHHH------HHHhhHHHH
Confidence            4333221100   00  00011111111    000     0  000   0         011111      234466667


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHH
Q 003487          705 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELL  758 (816)
Q Consensus       705 mI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELl  758 (816)
                      ++..+--.|.||+....+|-.-|..+....+++.....||.+.||+.+.+||.+
T Consensus      1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888888888888888888888888888888888888888888888888877

>PRK11637 AmiB activator; Provisional

Probab=97.43  E-value=0.045  Score=59.57  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=54.4

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003487          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (816)
Q Consensus       457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l  535 (816)
                      ...++...|++-|+++-++.-.++..+.....-.+.|..+-..+...+|+....+.+++.++++++.+|......++..
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777777777777777777776666666667777777777777777777777777776666666655555444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.32  E-value=0.036  Score=67.38  Aligned_cols=27  Identities=30%  Similarity=0.517  Sum_probs=15.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487          459 NEDFAALEQHIEDLTQEKFALQRSLEA  485 (816)
Q Consensus       459 ~~~faaLqqhIeDLT~EKfaLqR~L~~  485 (816)
                      ...+..|+.+|.+++..--.+.+.++.
T Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  720 (1163)
T COG1196         694 KNELRSLEDLLEELRRQLEELERQLEE  720 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666777777766555555554333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.32  E-value=0.65  Score=55.20  Aligned_cols=171  Identities=22%  Similarity=0.299  Sum_probs=124.1

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH-------------
Q 003487          451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE-------------  517 (816)
Q Consensus       451 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~d-------------  517 (816)
                      -|-+|--.-.++..|+|-+.-+-.||-+|...|+.+|.-.+.=-.+-+..+++.|..+..|++|+..             
T Consensus       256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~  335 (717)
T PF09730_consen  256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE  335 (717)
T ss_pred             chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence            4667777788999999999999999999999999999988888888888888888888888888871             


Q ss_pred             ------------------HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH
Q 003487          518 ------------------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  579 (816)
Q Consensus       518 ------------------mEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKler  579 (816)
                                        ++-|+....+-..++..++.|..+.+..+....++.+.   +-..++.++..|......+++
T Consensus       336 ~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek  412 (717)
T PF09730_consen  336 KERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEK  412 (717)
T ss_pred             cccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence                              24455555555666667777777777766666665543   222334444444444444466


Q ss_pred             HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       580 ele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                      ....-...+..+++.+..+.+-.++.+..+.+.|+|-..+-.-|-
T Consensus       413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLA  457 (717)
T PF09730_consen  413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELA  457 (717)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            555556677888888888888888888888888877755544443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.23  E-value=0.06  Score=61.83  Aligned_cols=153  Identities=24%  Similarity=0.284  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 003487          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  544 (816)
Q Consensus       465 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl  544 (816)
                      ||..|+++-+||-.|+.....-.+-+++|-.+++.|-       ..+...+.++++|+++.+.-....+.+..|++-...
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~-------~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~  213 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLE-------AELEQEEEEMEQLKQQQKELTESSEELKEERESLKE  213 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999889999988777666655555555555554       445555556666666655555667788899999888


Q ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHHH-----hhhhhhhHHHHh--hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHH
Q 003487          545 ECNAADERAKILASEVIGLEEKALRL-----RSNELKLERQLE--NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK  617 (816)
Q Consensus       545 e~~aA~ERak~LAaEVV~LEEk~l~L-----RS~ELKlerele--~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKk  617 (816)
                      ...++..|.+.|-.++..|..+....     +-.+++.+++..  .++.++..+..++.....++..++--+++|.|+-+
T Consensus       214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr  293 (546)
T PF07888_consen  214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLR  293 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            88999999999999999998887422     111222222211  12233444444444334444455555556666555


Q ss_pred             HHHHHHH
Q 003487          618 MMQSKLR  624 (816)
Q Consensus       618 lLqskLR  624 (816)
                      .++.+|.
T Consensus       294 ~~qe~lq  300 (546)
T PF07888_consen  294 SAQEQLQ  300 (546)
T ss_pred             HHHHHHH
Confidence            5555554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.11  E-value=0.066  Score=65.10  Aligned_cols=136  Identities=16%  Similarity=0.257  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 003487          484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK-------LQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  556 (816)
Q Consensus       484 ~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEq-------Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L  556 (816)
                      ...++-.+..-..++++..+++.--.++++++++.+.       +.+.++..+.+...++.|+..+.....+...+-..|
T Consensus       298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l  377 (1074)
T KOG0250|consen  298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRL  377 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555556666666666666666666555444       444444555555566677777777777777888888


Q ss_pred             HHHHHhHHHHH-HHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 003487          557 ASEVIGLEEKA-LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  619 (816)
Q Consensus       557 AaEVV~LEEk~-l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklL  619 (816)
                      -..|..++++. ..+-++-.+.+.+++.|..|++.++-++.+|..+++++..-+...+||+-..
T Consensus       378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i  441 (1074)
T KOG0250|consen  378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI  441 (1074)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            88888888888 6667777788889999999999999999999999999999888888888433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.09  E-value=0.04  Score=58.46  Aligned_cols=76  Identities=25%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487          466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK----SEMEKLQEEIKVQLVELESFRNEYAN  541 (816)
Q Consensus       466 qqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk----~dmEqLq~Ei~aQ~~~le~l~aErda  541 (816)
                      +.|++.|-.++-.|...+++...+...|.....+|....+.-...+.++.    .+++.+++++..+..+++.++.+.+.
T Consensus       155 ~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~e  234 (325)
T PF08317_consen  155 EENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAE  234 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444333321    33444444444444444444333333

>PRK11637 AmiB activator; Provisional

Probab=97.03  E-value=0.16  Score=55.45  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=48.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003487          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (816)
Q Consensus       460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l  535 (816)
                      .++..+++-|.++..++-.++..|....+=.+.+..+-..+....+.....+.+|+.++++++.+|..+...+...
T Consensus        54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637         54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777766666666555555566666666666666666666666666666666655554433

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.99  E-value=0.06  Score=68.87  Aligned_cols=156  Identities=21%  Similarity=0.259  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 003487          466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL--------------QEEIKVQLVE  531 (816)
Q Consensus       466 qqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqL--------------q~Ei~aQ~~~  531 (816)
                      .|+++++-++|--|+.-|+..++..+-+...+..|-...|+-.+.+.-+..++++.              ..-+.--.-.
T Consensus      1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999998666666555555444              2222233333


Q ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHH
Q 003487          532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  611 (816)
Q Consensus       532 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~A  611 (816)
                      .+.+..|+|+|+.+..+.....+.|.-.+-.+=+.+-+       ++++-..+..++..+..++..+.|..++|+....+
T Consensus      1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~-------l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEE-------LRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677777766666666666655554444333333       35555677778888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 003487          612 LQEEKKMMQSKLRKASG  628 (816)
Q Consensus       612 LQEEKklLqskLRka~~  628 (816)
                      +..||.-||.+|-.+-+
T Consensus      1524 le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEELEA 1540 (1930)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888888888875443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.98  E-value=1.3  Score=52.50  Aligned_cols=168  Identities=21%  Similarity=0.274  Sum_probs=81.7

Q ss_pred             CCchhhHHHHHHHHHHHHHHH---HHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003487          456 TKHNEDFAALEQHIEDLTQEK---FALQRSLEAS-----------RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL  521 (816)
Q Consensus       456 ~~~~~~faaLqqhIeDLT~EK---faLqR~L~~s-----------~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqL  521 (816)
                      ....+....||+-|+-|-.|=   ..+...|..+           +--.++|-.||+.|-.+++.....-.+-|.-|..|
T Consensus       414 ~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L  493 (697)
T PF09726_consen  414 NSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL  493 (697)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667778888777665441   1111122111           22245577788888888877666655555555555


Q ss_pred             HHHHHH---HHHHhh-hhHHHHHHHhhhhh-hHH----------HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHH
Q 003487          522 QEEIKV---QLVELE-SFRNEYANVRLECN-AAD----------ERAKILASEVIGLEEKALRLRSNELKLERQLENSQS  586 (816)
Q Consensus       522 q~Ei~a---Q~~~le-~l~aErdaArle~~-aA~----------ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~  586 (816)
                      ++.++.   ++..+| .|.+||.+-+.+.. +|.          |-+-.+-.-+-.||.++.+||.+.-..|.++..+..
T Consensus       494 EkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~  573 (697)
T PF09726_consen  494 EKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELES  573 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443332   223332 33555533222111 110          111122223344555555555433333333334444


Q ss_pred             HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487          587 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  623 (816)
Q Consensus       587 E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskL  623 (816)
                      |+..++.....-++|-..|.+.+.+|||+..+|..-|
T Consensus       574 ~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL  610 (697)
T PF09726_consen  574 ELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL  610 (697)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4444444312234566677777888888876665544

; GO: 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.96  E-value=0.11  Score=59.69  Aligned_cols=64  Identities=25%  Similarity=0.375  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  526 (816)
Q Consensus       463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~  526 (816)
                      ..|++-.+.|-++.-.|++.|..+++-++.|..++..++...-........|+.+.+.++..|.
T Consensus       160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~  223 (546)
T PF07888_consen  160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIR  223 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566666677888888888888888888888887665555555555554444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.95  E-value=0.14  Score=56.26  Aligned_cols=67  Identities=18%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  526 (816)
Q Consensus       460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~E----sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~  526 (816)
                      +.+..+++.|+.+..+.-.++-.++..++..+    .+......+...|+......++++.++++|+.+|.
T Consensus       174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~  244 (562)
T PHA02562        174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELL  244 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555554444443222222    22233344444455555555555555555555443

>TIGR00606 rad50 rad50

Probab=96.82  E-value=0.093  Score=64.66  Aligned_cols=78  Identities=14%  Similarity=0.201  Sum_probs=39.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (816)
Q Consensus       460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr  539 (816)
                      .++..||+-|.++..+|+.+...+++-    .+|..+-..|...-++++..+..++.+++-|+.++..-...++.++.+.
T Consensus       857 ~eI~~Lq~ki~el~~~klkl~~~l~~r----~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  932 (1311)
T TIGR00606       857 EQIQHLKSKTNELKSEKLQIGTNLQRR----QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK  932 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            334444444444444555444433322    2333344445555566666666666666666666555555555554443


Q ss_pred             HH
Q 003487          540 AN  541 (816)
Q Consensus       540 da  541 (816)
                      ..
T Consensus       933 ~~  934 (1311)
T TIGR00606       933 ET  934 (1311)
T ss_pred             HH
Confidence            33

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.79  E-value=0.63  Score=54.33  Aligned_cols=228  Identities=23%  Similarity=0.284  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh----
Q 003487          467 QHIEDLTQEKFALQRSLEASRALSESLAAENSS----------LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL----  532 (816)
Q Consensus       467 qhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsa----------LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l----  532 (816)
                      +.++.|..+|..+.|+|.+=++|-++|+.=-.+          ||..-----++..+|+..+.+|+.++..-...+    
T Consensus       143 kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~  222 (617)
T PF15070_consen  143 KLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS  222 (617)
T ss_pred             HHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            445566667788889999988888888764333          333322223333344444444444433333332    


Q ss_pred             ---hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH-HhhhHHHHHHHHHHhhhHHHhhhhhHHH
Q 003487          533 ---ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ-LENSQSEISSYKKKISSLEKERQDFQST  608 (816)
Q Consensus       533 ---e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlere-le~l~~E~~s~~rqlsslekeR~~lqst  608 (816)
                         ..+..+||..---......-...|++|--.|-.+++.        +.+ ++.++.+-...+..++-+-+|=+..+-.
T Consensus       223 qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~--------Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~  294 (617)
T PF15070_consen  223 QEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQ--------QTQLMDRLQHEESQGKVQLEMAHQELQEAQEH  294 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence               3333333321111111111124455555555444331        111 2333333333444444444555566677


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCccCCCCCcccccccccccccccccCccccCCCCCCccCCCCCcCCCCCCCCCCcccc
Q 003487          609 IEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGR  688 (816)
Q Consensus       609 i~ALQEEKklLqskLRka~~~gk~~~~~kns~~~kDASTSTdDLai~dd~~~sSn~etlds~s~~s~~~s~~pllpe~G~  688 (816)
                      ++++..+-..|+..|..++..|.-.-.              + .    +..   +.+           +   |       
T Consensus       295 Lea~~qqNqqL~~qls~~~~~~eg~~~--------------~-~----~~~---~ee-----------~---~-------  331 (617)
T PF15070_consen  295 LEALSQQNQQLQAQLSLMALPGEGDGL--------------E-S----ESE---EEE-----------A---P-------  331 (617)
T ss_pred             HHHHHhhhHHHHHHHHhhcCCCCCccc--------------c-c----ccc---ccc-----------c---c-------
Confidence            778888888899999987665521100              0 0    000   000           0   0       


Q ss_pred             cccccccccchhhH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 003487          689 LALEGLAVNIPHDQ---MRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLE  749 (816)
Q Consensus       689 ~~l~g~~vsIp~DQ---lRmI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE  749 (816)
                          -...+||+|.   =+|...+|+.+..++.||.+|...|......|..|...-+.+..+.+
T Consensus       332 ----~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e  391 (617)
T PF15070_consen  332 ----QPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPE  391 (617)
T ss_pred             ----CcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence                0013566653   46788999999999999999999999988888777666555544443

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.78  E-value=0.27  Score=54.10  Aligned_cols=160  Identities=17%  Similarity=0.265  Sum_probs=87.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRA----LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  532 (816)
Q Consensus       457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~----l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l  532 (816)
                      .-..+...|+..|+.+..+--.+++.+...++    ..+.|-.+-+.+...+++-..++..|++++..+..++.....+|
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L  257 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL  257 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence            34456667777777777776666655555444    34567777778888888888888888777777755544433333


Q ss_pred             hhhHHHHHHHhhh----------------hh--------------hHHHHHHHHHHHHHhHHHHHH---HHhhhhhhhHH
Q 003487          533 ESFRNEYANVRLE----------------CN--------------AADERAKILASEVIGLEEKAL---RLRSNELKLER  579 (816)
Q Consensus       533 e~l~aErdaArle----------------~~--------------aA~ERak~LAaEVV~LEEk~l---~LRS~ELKler  579 (816)
                      ..+..++..++..                |.              .....-+.|..++-.|++++.   +.+..--++++
T Consensus       258 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~  337 (562)
T PHA02562        258 NKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSK  337 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333332222221                11              111222333333333333333   11112223345


Q ss_pred             HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487          580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (816)
Q Consensus       580 ele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK  616 (816)
                      .+..+..++..++..+.++.+++..++..|+.|+++.
T Consensus       338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~  374 (562)
T PHA02562        338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF  374 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5556666666666666666666666666666666443

>TIGR00606 rad50 rad50

Probab=96.71  E-value=0.77  Score=56.94  Aligned_cols=161  Identities=12%  Similarity=0.188  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003487          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR  536 (816)
Q Consensus       464 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaL-------Td~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~  536 (816)
                      -|+..|+.+...+-.+...+....+..+.|..-++..       ...+......+.++.++++.++.++.-....++.+.
T Consensus       699 ~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~  778 (1311)
T TIGR00606       699 DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIM  778 (1311)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566655556677777777777777766443332       233333444455555555555555555555555555


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhh--hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHH
Q 003487          537 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL--KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  614 (816)
Q Consensus       537 aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~EL--Klerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQE  614 (816)
                      .+.+.+.. +-.-..-...+..|+..|+.++-++....-  ...+.++.+..++..+++++..+.++...++...+.+++
T Consensus       779 ~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~  857 (1311)
T TIGR00606       779 PEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE  857 (1311)
T ss_pred             HhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555433 222233334457788888887776644222  112456778888888888888888888888888888888


Q ss_pred             HHHHHHHHHHh
Q 003487          615 EKKMMQSKLRK  625 (816)
Q Consensus       615 EKklLqskLRk  625 (816)
                      +-+.||.++.+
T Consensus       858 eI~~Lq~ki~e  868 (1311)
T TIGR00606       858 QIQHLKSKTNE  868 (1311)
T ss_pred             HHHHHHHHHHH
Confidence            88888777765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.65  E-value=0.42  Score=50.04  Aligned_cols=133  Identities=17%  Similarity=0.269  Sum_probs=56.2

Q ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHH-------HHHHhHHHHHH
Q 003487          496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA-------SEVIGLEEKAL  568 (816)
Q Consensus       496 ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA-------aEVV~LEEk~l  568 (816)
                      +...+..+.+.-...+.++..+++.++.+++.....++.++.+.+.++...    .|.+.|-       .++...+.++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~----~~~~~L~~~g~is~~~~~~~~~~~~  206 (423)
T TIGR01843       131 QQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL----EARRKLKEKGLVSRLELLELERERA  206 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            333333444444444445555555555554444444444444444444322    1222222       22333333444


Q ss_pred             HHhhhhhhhHHHHhhhHHHHHHHHHHhhhH--------HHhhhhhHHHHHHHHHHHHHHHHHHH----hhcCCCCc
Q 003487          569 RLRSNELKLERQLENSQSEISSYKKKISSL--------EKERQDFQSTIEALQEEKKMMQSKLR----KASGSGKS  632 (816)
Q Consensus       569 ~LRS~ELKlerele~l~~E~~s~~rqlssl--------ekeR~~lqsti~ALQEEKklLqskLR----ka~~~gk~  632 (816)
                      +++.+...++.++..+..++..++.++..+        ..++..++..+..++.+...++.+|.    +++-.|..
T Consensus       207 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V  282 (423)
T TIGR01843       207 EAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTV  282 (423)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEE
Confidence            444444444444444444444444333322        22233344444444444444444444    25555655

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK09039 hypothetical protein; Validated

Probab=96.59  E-value=0.26  Score=53.31  Aligned_cols=67  Identities=22%  Similarity=0.260  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487          547 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  613 (816)
Q Consensus       547 ~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ  613 (816)
                      +++..|+..|..+...+....-+.+.+..+|+.|++.|+..+.+++..|.++++.-.+.+.-|+.|+
T Consensus       112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~  178 (343)
T PRK09039        112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG  178 (343)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666666666666666666666666666666666555555555555444

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.56  E-value=0.18  Score=54.27  Aligned_cols=10  Identities=10%  Similarity=0.381  Sum_probs=6.1

Q ss_pred             ccccccCCch
Q 003487          450 QHGFYSTKHN  459 (816)
Q Consensus       450 ~~~F~s~~~~  459 (816)
                      |.+||+.+.+
T Consensus       101 F~EY~~a~~d  110 (312)
T smart00787      101 FKEYFSASPD  110 (312)
T ss_pred             HHHHHcCCHH
Confidence            6777765443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.48  E-value=0.38  Score=46.48  Aligned_cols=126  Identities=19%  Similarity=0.302  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH
Q 003487          486 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE  565 (816)
Q Consensus       486 s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE  565 (816)
                      +.+-++.|...+-.|-+++-+....|..|+..+.+|+.+|..-...|..++.-.+..-.....    +-.|-.-|-.||+
T Consensus        12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LEe   87 (143)
T PF12718_consen   12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLEE   87 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHHH
Confidence            334444444444444444444444555555555555544443333333332222111111111    1134444555555


Q ss_pred             HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487          566 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  615 (816)
Q Consensus       566 k~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE  615 (816)
                      .+-+.-..---....|..+...+..++|++.+|+.+|..+..-++.|...
T Consensus        88 ele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k  137 (143)
T PF12718_consen   88 ELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK  137 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            55444333223344455555666777777777777777666665555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.43  E-value=0.52  Score=49.56  Aligned_cols=102  Identities=24%  Similarity=0.302  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHhhhh--HHHH
Q 003487          469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------QLVELESF--RNEY  539 (816)
Q Consensus       469 IeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a-------Q~~~le~l--~aEr  539 (816)
                      |..|..+++.|.+-..-.++..+.+-.|-+++-++|=..--.+..|+.++-+++.+|+.       -...+.++  .-||
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~   91 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL   91 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            33455566666555555555555555555555555555555555555555555555443       33333333  5678


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487          540 ANVRLECNAADERAKILASEVIGLEEKALRL  570 (816)
Q Consensus       540 daArle~~aA~ERak~LAaEVV~LEEk~l~L  570 (816)
                      .+...+...|.+|...|-.|++.|.++.-.+
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l  122 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKL  122 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999988887776644

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.43  E-value=0.87  Score=55.09  Aligned_cols=64  Identities=22%  Similarity=0.256  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003487          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV  527 (816)
Q Consensus       464 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a  527 (816)
                      ..+|..-+....|+.|-+.+..+|+..+++-.-+.+|-=.+++|.-...+-..+-|||++|.+-
T Consensus       334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq  397 (980)
T KOG0980|consen  334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ  397 (980)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888899999999999999999999999999999999999998888888888887543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.42  E-value=0.27  Score=60.71  Aligned_cols=164  Identities=23%  Similarity=0.279  Sum_probs=104.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH---
Q 003487          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQL---  529 (816)
Q Consensus       457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq----Q~~~v~qLk~dmEqLq~Ei~aQ~---  529 (816)
                      ...+.-+-|++.|+.++.+...|+|   ++.+|++.=..|+......-++    .-..+.+++++|+-+++..+.-+   
T Consensus       462 ~~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~  538 (1317)
T KOG0612|consen  462 ELEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL  538 (1317)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667899999999999999998   4444444443333322222222    23345556666666655544442   


Q ss_pred             HHhhhhHHHHHHHhhhhhhHHH--------------HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHh
Q 003487          530 VELESFRNEYANVRLECNAADE--------------RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI  595 (816)
Q Consensus       530 ~~le~l~aErdaArle~~aA~E--------------Rak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rql  595 (816)
                      -.+.+++.+.+.+.+.+.+..+              +-+.+..++-.+|+++-.+-..+.++-++..+++.+.+.++++-
T Consensus       539 ~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~  618 (1317)
T KOG0612|consen  539 EKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQR  618 (1317)
T ss_pred             hhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2334445666666666664444              23334456678899999898888999999889998888888887


Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487          596 SSLEKERQDFQSTIEALQEEKKMMQSKL  623 (816)
Q Consensus       596 sslekeR~~lqsti~ALQEEKklLqskL  623 (816)
                      -.+..++.+++..|.-||+.-+.+...+
T Consensus       619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l  646 (1317)
T KOG0612|consen  619 TEISEIIAELKEEISSLEETLKAGKKEL  646 (1317)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence            7776667666666666664443333333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.39  E-value=4.6  Score=50.95  Aligned_cols=111  Identities=16%  Similarity=0.263  Sum_probs=59.7

Q ss_pred             ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----hhHHHHHHHHHHHHHH
Q 003487          448 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-----QRSVVNQLKSEMEKLQ  522 (816)
Q Consensus       448 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq-----Q~~~v~qLk~dmEqLq  522 (816)
                      +-..+|.-+.++.++..|.+-|++|.+-+-.|.+.-++-.+| +.+...    -+.||+     ....+-..+.+++.++
T Consensus       208 ~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l-~~i~~~----y~~y~~~~~~~~~~~~~~~~~~~~~~~  282 (1353)
T TIGR02680       208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERAL-RNFLQR----YRRYARTMLRRRATRLRSAQTQYDQLS  282 (1353)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888899999999999988887776665543333333 333322    334443     2233333444444455


Q ss_pred             HHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH
Q 003487          523 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL  563 (816)
Q Consensus       523 ~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L  563 (816)
                      .++......++....++..+........++-..+-.|+..|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l  323 (1353)
T TIGR02680       283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEAL  323 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54444444445555555554444444444444444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.37  E-value=0.76  Score=52.14  Aligned_cols=122  Identities=26%  Similarity=0.293  Sum_probs=91.0

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhh-------h
Q 003487          503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE-------L  575 (816)
Q Consensus       503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~E-------L  575 (816)
                      ........+.+.+..|+....|+..=...+++|+.|..+.+.+.....+|-....++|..|+.++.++|+.-       -
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~  361 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE  361 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            356667777788888888888888888999999999999999999999999999999999999999998764       1


Q ss_pred             -------hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          576 -------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       576 -------Klerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                             .+...|+.+..|.+.+++.......+...+...++...-.-+-++.||+
T Consensus       362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~  417 (522)
T PF05701_consen  362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLE  417 (522)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   2334455555555556655555555555555555555555555556665

Several sequences in this family are described as being myosin heavy chain-like.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.32  E-value=0.95  Score=47.49  Aligned_cols=90  Identities=19%  Similarity=0.292  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH----HHHHHHHhhhhhhhHHHHhhhHHH
Q 003487          512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL----EEKALRLRSNELKLERQLENSQSE  587 (816)
Q Consensus       512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L----EEk~l~LRS~ELKlerele~l~~E  587 (816)
                      ..++.++++++.++......++.+..+...++.....+.++-... ...+.-    +.+.+..+.....++.++..+..+
T Consensus       140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~-~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~  218 (423)
T TIGR01843       140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR-RKLKEKGLVSRLELLELERERAEAQGELGRLEAE  218 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            344444555555554444444444444444444443333221110 111110    234444444555555555555555


Q ss_pred             HHHHHHHhhhHHHhh
Q 003487          588 ISSYKKKISSLEKER  602 (816)
Q Consensus       588 ~~s~~rqlsslekeR  602 (816)
                      +..++.++..++.+.
T Consensus       219 l~~~~~~l~~~~~~~  233 (423)
T TIGR01843       219 LEVLKRQIDELQLER  233 (423)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555554443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK03918 chromosome segregation protein; Provisional

Probab=96.28  E-value=0.77  Score=53.45  Aligned_cols=84  Identities=21%  Similarity=0.269  Sum_probs=39.4

Q ss_pred             HHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh-----hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 003487          530 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR-----SNELKLERQLENSQSEISSYKKKISSLEKERQD  604 (816)
Q Consensus       530 ~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR-----S~ELKlerele~l~~E~~s~~rqlsslekeR~~  604 (816)
                      ..++.+..++...+..+....+....|..++-.|++++-.++     ...-.++++++.+..++..+++++..++++-..
T Consensus       612 ~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~  691 (880)
T PRK03918        612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREE  691 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444455555555555555555555555554     333334444444444444444444444444444


Q ss_pred             hHHHHHHHH
Q 003487          605 FQSTIEALQ  613 (816)
Q Consensus       605 lqsti~ALQ  613 (816)
                      +...|+.++
T Consensus       692 l~~~i~~~~  700 (880)
T PRK03918        692 IKKTLEKLK  700 (880)
T ss_pred             HHHHHHHHH
Confidence            444444443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.20  E-value=0.058  Score=57.57  Aligned_cols=118  Identities=23%  Similarity=0.329  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (816)
Q Consensus       462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda  541 (816)
                      +..|+++++++..|+-.+++-|.+-+               .=......+.++..+++.|++|...-..+|+.+..|++.
T Consensus        11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~---------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~   75 (314)
T PF04111_consen   11 LEQLDKQLEQAEKERDTYQEFLKKLE---------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREE   75 (314)
T ss_dssp             ----------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688899999999999999888776               001123345666777777777766666666666666655


Q ss_pred             HhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487          542 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  615 (816)
Q Consensus       542 Arle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE  615 (816)
                                    |..|...||++..++..+|.+.-       .+...+..++....++|+.+..-++.++++
T Consensus        76 --------------l~~el~~le~e~~~l~~eE~~~~-------~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~  128 (314)
T PF04111_consen   76 --------------LDQELEELEEELEELDEEEEEYW-------REYNELQLELIEFQEERDSLKNQYEYASNQ  128 (314)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          44455556665555543333322       233334444444445555544444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK03918 chromosome segregation protein; Provisional

Probab=96.18  E-value=1.2  Score=51.89  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=12.3

Q ss_pred             hhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487          544 LECNAADERAKILASEVIGLEEKALRL  570 (816)
Q Consensus       544 le~~aA~ERak~LAaEVV~LEEk~l~L  570 (816)
                      ..+..-.++.+.+-.|+..|++++-++
T Consensus       252 ~~~~~l~~~i~~l~~el~~l~~~l~~l  278 (880)
T PRK03918        252 GSKRKLEEKIRELEERIEELKKEIEEL  278 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444555555555554443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.15  E-value=0.57  Score=45.29  Aligned_cols=131  Identities=20%  Similarity=0.297  Sum_probs=107.8

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487          491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  570 (816)
Q Consensus       491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L  570 (816)
                      +.|=.|.+.+.+++.+-...+.+|.....+++++|..=.-.+..+-.|.+.++.....+.+..-....-+...|  .+.-
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E--~l~r   80 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE--QLNR   80 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH--HHHh
Confidence            56777889999999999999999999999999999999999999999999999988888877766665544444  3434


Q ss_pred             hhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487          571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (816)
Q Consensus       571 RS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk  625 (816)
                      |.+.|  |.+|+.+...+..+..++..+.+.-.++.--+.+|..++.-+-.|+-.
T Consensus        81 riq~L--Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee  133 (143)
T PF12718_consen   81 RIQLL--EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE  133 (143)
T ss_pred             hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44444  888999888888999999988888888888888888887776666653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.12  E-value=0.54  Score=53.56  Aligned_cols=146  Identities=19%  Similarity=0.277  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 003487          479 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  555 (816)
Q Consensus       479 LqR~L~~s~~l~EsLA~ENsaLTd~yN---qQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~  555 (816)
                      +.+.|...++..+.|..|-+.|..+|-   .-...+.+++.+++.++.++..-...+..-...|...+-++....++-..
T Consensus       315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee  394 (569)
T PRK04778        315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE  394 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            556677778888888888888888863   33556777788888888887766667777777788888999999999999


Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh--HHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS--LEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       556 LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlss--lekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                      +-.+...+.+.+..||..|..++..++.++..++.+++.+..  +-.--......+..++++-+.|..+|.
T Consensus       395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~  465 (569)
T PRK04778        395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE  465 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988888888877762  111123445556666666666666665

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.09  E-value=2.9  Score=45.79  Aligned_cols=41  Identities=37%  Similarity=0.528  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003487          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS  503 (816)
Q Consensus       463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~  503 (816)
                      -.|+--|..|.+|---|...|+.-+.-+..|..||.+|-..
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~   63 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA   63 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777788888888888888888888889999999888654

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.09  E-value=1.9  Score=43.79  Aligned_cols=161  Identities=22%  Similarity=0.321  Sum_probs=86.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (816)
Q Consensus       460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr  539 (816)
                      .+++.|+.+|+++..|--.|.+---++..--.-.-+.+..|-+--..-...|-.|+..+.+.+....+---.+-..-+|.
T Consensus        19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el   98 (194)
T PF15619_consen   19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL   98 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888888777666666554444444444444444444444455555555544443322222222222222


Q ss_pred             HHHhhhhh---------hHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 003487          540 ANVRLECN---------AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE  610 (816)
Q Consensus       540 daArle~~---------aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~  610 (816)
                      -..+-.+.         .=.|| ..|..++-.++.++..---.--.|+++++-..   ..+.+++.+-.+--.+++..+.
T Consensus        99 ~k~~~~l~~L~~L~~dknL~eR-eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~---k~~~rql~~e~kK~~~~~~~~~  174 (194)
T PF15619_consen   99 LKTKDELKHLKKLSEDKNLAER-EELQRKLSQLEQKLQEKEKKIQELEKQLELEN---KSFRRQLASEKKKHKEAQEEVK  174 (194)
T ss_pred             HHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Confidence            21111111         11122 22344444444444332222223344444333   5667777766677778899999


Q ss_pred             HHHHHHHHHHHHHH
Q 003487          611 ALQEEKKMMQSKLR  624 (816)
Q Consensus       611 ALQEEKklLqskLR  624 (816)
                      .|++|-..|+.+|.
T Consensus       175 ~l~~ei~~L~~klk  188 (194)
T PF15619_consen  175 SLQEEIQRLNQKLK  188 (194)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999987

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=96.03  E-value=0.25  Score=47.90  Aligned_cols=64  Identities=27%  Similarity=0.407  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487          508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  571 (816)
Q Consensus       508 ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR  571 (816)
                      ...+.++..++.++++.+......+..++.++...+.......+|-+.+..++-.+++++..++
T Consensus        87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666667777666666666666666666666666666666666665

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.94  E-value=2.5  Score=43.79  Aligned_cols=35  Identities=31%  Similarity=0.373  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHH
Q 003487          711 ALISELALEKEELVQALSSELAQSSKLKDLNNELS  745 (816)
Q Consensus       711 aLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELs  745 (816)
                      +.|..++.|...+...+..-...+.+|-+.+.-|.
T Consensus       262 ~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld  296 (312)
T PF00038_consen  262 AEIAELEEELAELREEMARQLREYQELLDVKLALD  296 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33555555555555555555555555555554443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.89  E-value=0.61  Score=55.11  Aligned_cols=159  Identities=25%  Similarity=0.307  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------hh----h
Q 003487          466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE-------LE----S  534 (816)
Q Consensus       466 qqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~-------le----~  534 (816)
                      ...|.-|-.|--.|...|+.+|.+=+.|=..-..|+..=..-...+.+|+.+.|+||..+..--.+       +.    .
T Consensus       417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr  496 (697)
T PF09726_consen  417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR  496 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777888888899999999999888888777777655577788888888888888754321111       11    1


Q ss_pred             hHHH-HHHHhhhhhhHHHHHHHHHHHHHhHH----------HHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh
Q 003487          535 FRNE-YANVRLECNAADERAKILASEVIGLE----------EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ  603 (816)
Q Consensus       535 l~aE-rdaArle~~aA~ERak~LAaEVV~LE----------Ek~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~  603 (816)
                      +++| +.++.+|..-+.||....++|-..-.          |-+-.+|.-.=.||.|+..|+.|+...+.++..+++|.+
T Consensus       497 L~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~  576 (697)
T PF09726_consen  497 LAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ  576 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333 23344555555555444443322111          111112222233355555566666666666666655555


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 003487          604 DFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       604 ~lqsti~ALQEEKklLqskLR  624 (816)
                      +|+.....-+.|-..|.+.|+
T Consensus       577 ~lr~~~~e~~~~~e~L~~aL~  597 (697)
T PF09726_consen  577 ELRKYEKESEKDTEVLMSALS  597 (697)
T ss_pred             HHHHHHhhhhhhHHHHHHHHH
Confidence            555432112334445555554

; GO: 0016021 integral to membrane

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.87  E-value=2.5  Score=43.65  Aligned_cols=158  Identities=22%  Similarity=0.320  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003487          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  538 (816)
Q Consensus       462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yN---qQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aE  538 (816)
                      ++-|+.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+=   +--.....|++++|.|+..       +..+-++
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~-------~~~lEE~   82 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTL-------AKSLEEE   82 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            44556566667788888999999999999999999888876653   2223344556666666654       2344445


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHh---------------------hh
Q 003487          539 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI---------------------SS  597 (816)
Q Consensus       539 rdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rql---------------------ss  597 (816)
                      +.-..-.|-....-.+.|.++|-.|.++-.++-.+.=++.+..+.|..+...+.+||                     ..
T Consensus        83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e  162 (193)
T PF14662_consen   83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE  162 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            444444444555556777788877777766665555555555555544444444444                     22


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003487          598 LEKERQDFQSTIEALQEEKKMMQSKLRKA  626 (816)
Q Consensus       598 lekeR~~lqsti~ALQEEKklLqskLRka  626 (816)
                      +.+-=.+..++.+.|.-||.+|...|+++
T Consensus       163 L~~~ieEy~~~teeLR~e~s~LEeql~q~  191 (193)
T PF14662_consen  163 LKKTIEEYRSITEELRLEKSRLEEQLSQM  191 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            22222344455666667777777777543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.79  E-value=0.97  Score=57.41  Aligned_cols=135  Identities=16%  Similarity=0.233  Sum_probs=77.0

Q ss_pred             HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh-
Q 003487          494 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-  572 (816)
Q Consensus       494 A~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS-  572 (816)
                      ..+-+.|..+..++...+.+++.+++.++.++..-...++.++.++...+.....+..++..+...|..|+. +.++-- 
T Consensus       354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~-~~~~~~~  432 (1486)
T PRK04863        354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER-AKQLCGL  432 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCC
Confidence            334444555555555555566666666665555555555555555555555555555555555555544432 111110 


Q ss_pred             hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh-hcCCCCcc
Q 003487          573 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKSI  633 (816)
Q Consensus       573 ~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk-a~~~gk~~  633 (816)
                      ..|    ..++|...+..|..++..++.++.+++.-++.++.+++-+..++.. ....|++.
T Consensus       433 ~~~----SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~  490 (1486)
T PRK04863        433 PDL----TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVS  490 (1486)
T ss_pred             CCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence            111    1234666667777777777777777777777777777777666664 55666753

>PRK09039 hypothetical protein; Validated

Probab=95.68  E-value=2  Score=46.59  Aligned_cols=57  Identities=19%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 003487          535 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  598 (816)
Q Consensus       535 l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlssl  598 (816)
                      +..+.++.+..++++.-....|-.||-.|++++-.+       +.+|..+..+....+.++..+
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l-------e~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL-------EAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666655555555555555554433       444444444444444444433

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=95.66  E-value=1.2  Score=50.83  Aligned_cols=128  Identities=13%  Similarity=0.230  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh----hHHHHHHHHHHHHHh
Q 003487          487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN----AADERAKILASEVIG  562 (816)
Q Consensus       487 ~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~----aA~ERak~LAaEVV~  562 (816)
                      +.+.+.|+.....+. ++++......++..++.++++++..+...+..+.+..++.|....    .-.+--+.|..|--.
T Consensus        39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~  117 (475)
T PRK10361         39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN  117 (475)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555 455555555566666666666655555555555444333332221    122223456667777


Q ss_pred             HHHHHHHHhhhhhhhHHH------HhhhHHHHHHHHHHhhhHH----HhhhhhHHHHHHHHHH
Q 003487          563 LEEKALRLRSNELKLERQ------LENSQSEISSYKKKISSLE----KERQDFQSTIEALQEE  615 (816)
Q Consensus       563 LEEk~l~LRS~ELKlere------le~l~~E~~s~~rqlssle----keR~~lqsti~ALQEE  615 (816)
                      |=.++++-++..+.-.++      |.=++..+..++++|..++    ++|..|...|..|++-
T Consensus       118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~  180 (475)
T PRK10361        118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQL  180 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777788777777764443      3448889999999999887    4578888888777653

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=95.62  E-value=1.2  Score=46.35  Aligned_cols=115  Identities=23%  Similarity=0.272  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003487          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (816)
Q Consensus       461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd  540 (816)
                      -+..|+|+|.|+-.+       |.+++.-+.++-+.--.+-++||+....+..++..-+          .+|..=..+.+
T Consensus        25 p~~~l~Q~ird~~~~-------l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~----------~Al~~g~E~LA   87 (225)
T COG1842          25 PEKMLEQAIRDMESE-------LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE----------LALQAGNEDLA   87 (225)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHCCCHHHH
Confidence            348999999998655       5555444444444555566677665554444433321          11111111111


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 003487          541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  598 (816)
Q Consensus       541 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlssl  598 (816)
                            ..|-+|-+.|.-.+-.++..+.+++....++++.+..|...|..++.+...+
T Consensus        88 ------r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l  139 (225)
T COG1842          88 ------REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL  139 (225)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  3455566666666666666666667777777777777777777777766644

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.61  E-value=1.6  Score=49.81  Aligned_cols=165  Identities=15%  Similarity=0.225  Sum_probs=121.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003487          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  537 (816)
Q Consensus       458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~a  537 (816)
                      -..++..|++.|.+.-.-=-.|  .|..+.+.++.+..+-+.|.+.+..-...-..+...+..+...+....-.+..+..
T Consensus       254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~  331 (569)
T PRK04778        254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE  331 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4677888887777732111111  35677788888888888888888887777788888888888888888888889999


Q ss_pred             HHHHHhhhhh---hHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHH
Q 003487          538 EYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  614 (816)
Q Consensus       538 ErdaArle~~---aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQE  614 (816)
                      |.+..++.+.   .-.++.+.+..++-.|++++..+.-.--+.......+..+...+.+++..+++++..+...|+.|+.
T Consensus       332 Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk  411 (569)
T PRK04778        332 EIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK  411 (569)
T ss_pred             HHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888854   3467888888888888888886654444444446667778888888888888888888888888875


Q ss_pred             HHHHHHHHHH
Q 003487          615 EKKMMQSKLR  624 (816)
Q Consensus       615 EKklLqskLR  624 (816)
                      +-..+..+|.
T Consensus       412 ~E~eAr~kL~  421 (569)
T PRK04778        412 DELEAREKLE  421 (569)
T ss_pred             HHHHHHHHHH
Confidence            5544444444

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.56  E-value=0.54  Score=49.44  Aligned_cols=115  Identities=26%  Similarity=0.343  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh---------hhhhhhHHHH
Q 003487          511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR---------SNELKLERQL  581 (816)
Q Consensus       511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR---------S~ELKlerel  581 (816)
                      +..|--++.+|...+.-+.-+|+.+++|..++.-...+.......|--+|..||..+..+|         ....|.++++
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~   91 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL   91 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            3344444444444444444444444444444444444444444444444444444443333         2455666777


Q ss_pred             hhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487          582 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (816)
Q Consensus       582 e~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk  625 (816)
                      ..|..|+...+++..+|+.+=.+|...++.|+++...|+.++.+
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~  135 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER  135 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888888888888888888888887777777763

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.56  E-value=2.5  Score=45.27  Aligned_cols=60  Identities=18%  Similarity=0.318  Sum_probs=29.2

Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q 003487          450 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASR--------------ALSESLAAENSSLTDSYNQQRSVVNQLK  515 (816)
Q Consensus       450 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~--------------~l~EsLA~ENsaLTd~yNqQ~~~v~qLk  515 (816)
                      |.+||+.+.+.-         .+-...|.+.+...+.+              .|-+.|...-+.|-..++.-...+..|.
T Consensus       106 f~EY~~a~~d~r---------~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~  176 (325)
T PF08317_consen  106 FREYYTADPDMR---------LLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD  176 (325)
T ss_pred             HHHHHcCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778887754321         12233444444444433              3445555555555555554444444443


Q ss_pred             HHH
Q 003487          516 SEM  518 (816)
Q Consensus       516 ~dm  518 (816)
                      .-+
T Consensus       177 ~~~  179 (325)
T PF08317_consen  177 ELL  179 (325)
T ss_pred             HHH
Confidence            333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.48  E-value=0.71  Score=58.53  Aligned_cols=101  Identities=18%  Similarity=0.220  Sum_probs=61.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 003487          504 YNQQRSVVNQLKSEMEKLQEEIKVQLVEL---ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ  580 (816)
Q Consensus       504 yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l---e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlere  580 (816)
                      .......+..|+.++..+++++..+...+   .....+++.|+.=|..++=--.-|....-.+++++.++....+.++.+
T Consensus       385 leelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~k  464 (1486)
T PRK04863        385 AEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQK  464 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444433333333333332   223455556666665444333446666777888888888888888999


Q ss_pred             HhhhHHHHHHHHHHhhhHHHhhhh
Q 003487          581 LENSQSEISSYKKKISSLEKERQD  604 (816)
Q Consensus       581 le~l~~E~~s~~rqlsslekeR~~  604 (816)
                      +..+..+++.++++...+-++-|.
T Consensus       465 L~~lea~leql~~~~~~l~~~~Gk  488 (1486)
T PRK04863        465 LSVAQAAHSQFEQAYQLVRKIAGE  488 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999988888776665444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.39  E-value=2.5  Score=53.12  Aligned_cols=51  Identities=18%  Similarity=0.194  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHH
Q 003487          708 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT  759 (816)
Q Consensus       708 NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlt  759 (816)
                      .+.+|+.+|+.+.++....|....+++=+ .-|-.++.++|-...++=|-++
T Consensus      1083 ~~~~l~~~l~~~i~~~~~ll~e~er~l~E-~~L~~~v~~~l~~ri~~A~~~v 1133 (1353)
T TIGR02680      1083 TPAGLLARLEQEIAQRRELLTARERELLE-NHLQGEIARHLQSLILAAERQV 1133 (1353)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777777777777776666555432 2344555555555555555444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.37  E-value=0.17  Score=50.19  Aligned_cols=116  Identities=22%  Similarity=0.282  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (816)
Q Consensus       460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr  539 (816)
                      .-.+.|++-+.++-..|-.++--|-....-.+.|-.+......+-+.....+..|+.++..|..+|+.....++.+..|+
T Consensus        74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~  153 (194)
T PF08614_consen   74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL  153 (194)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555667777766766667777777777778888888889999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 003487          540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNEL  575 (816)
Q Consensus       540 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~EL  575 (816)
                      .+.+++++.+.++.+.|-.|=-.|=+|.++.+..+-
T Consensus       154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA  189 (194)
T PF08614_consen  154 QALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA  189 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997765543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.33  E-value=3.9  Score=41.87  Aligned_cols=45  Identities=16%  Similarity=0.208  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003487          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  506 (816)
Q Consensus       462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq  506 (816)
                      ++.|++-||+.-..--.++..|..+..-++.+-.|..+|.++...
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~   47 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL   47 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777777777777777777777777777777777777766543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.29  E-value=0.069  Score=52.85  Aligned_cols=27  Identities=37%  Similarity=0.459  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003487          497 NSSLTDSYNQQRSVVNQLKSEMEKLQE  523 (816)
Q Consensus       497 NsaLTd~yNqQ~~~v~qLk~dmEqLq~  523 (816)
                      |..|...||+....+..|+..-..|+.
T Consensus        19 ~~~li~ay~~L~d~~~~l~~~~~~l~~   45 (194)
T PF08614_consen   19 FAELIDAYNRLADRTSLLKAENEQLQP   45 (194)
T ss_dssp             ---------------------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            334555555555555555555555554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=95.28  E-value=1.8  Score=53.50  Aligned_cols=166  Identities=23%  Similarity=0.341  Sum_probs=111.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  532 (816)
Q Consensus       458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~E-----NsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l  532 (816)
                      +..+...|+.+|+|+ +||+.-.+.++--.+.-++|-++     .=...+.||.|...+.-.+..+..|++.+.-+...+
T Consensus       233 ~~e~i~~l~k~i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~  311 (1074)
T KOG0250|consen  233 KEEEIKNLKKKIKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKI  311 (1074)
T ss_pred             HHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999987 56777555555555544444433     334678899998888777777777777776665555


Q ss_pred             hhh--------------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH-------HHhhhhhhhHHHHhhhHHH----
Q 003487          533 ESF--------------RNEYANVRLECNAADERAKILASEVIGLEEKAL-------RLRSNELKLERQLENSQSE----  587 (816)
Q Consensus       533 e~l--------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l-------~LRS~ELKlerele~l~~E----  587 (816)
                      +.+              +.|-++---+|..|.+..+.+..||..|++++.       ++++.-=.++|++..++.+    
T Consensus       312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~  391 (1074)
T KOG0250|consen  312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE  391 (1074)
T ss_pred             HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            544              466666667888999999999999999887654       3444444455665554443    


Q ss_pred             ----HHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          588 ----ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       588 ----~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                          +...+.++..|+++.-.|+..+..|.+|...++.+++
T Consensus       392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~  432 (1074)
T KOG0250|consen  392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK  432 (1074)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3444555566666666666666666666666666665

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.15  E-value=4.8  Score=41.76  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=24.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESL  493 (816)
Q Consensus       460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsL  493 (816)
                      .+...|.+-|++++.||-.|+-.+...+.-++.+
T Consensus        54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~   87 (312)
T PF00038_consen   54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDL   87 (312)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence            4566777888888888888877777666555554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=95.13  E-value=1.7  Score=51.67  Aligned_cols=106  Identities=19%  Similarity=0.297  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 003487          514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  593 (816)
Q Consensus       514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~r  593 (816)
                      .+.++|..++.-+.|+.   .+..++..   +.......+..|-..+-.||.+...+.+.--..+++.+.|+..++....
T Consensus       138 ~q~ELee~q~~Hqeql~---~Lt~aHq~---~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~  211 (739)
T PF07111_consen  138 SQRELEEAQRLHQEQLS---SLTQAHQE---ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQE  211 (739)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            35566666665555544   33333333   3345566777777777777777666655555556666666666655554


Q ss_pred             Hhhh------------------------HHHhhhhhHHHHHHHHHHH-------HHHHHHHHh
Q 003487          594 KISS------------------------LEKERQDFQSTIEALQEEK-------KMMQSKLRK  625 (816)
Q Consensus       594 qlss------------------------lekeR~~lqsti~ALQEEK-------klLqskLRk  625 (816)
                      .+++                        -+-||++|..+|..|||||       -+||+|+..
T Consensus       212 ~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS  274 (739)
T PF07111_consen  212 ELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQS  274 (739)
T ss_pred             HHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443                        2679999999999999999       567777773

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.02  E-value=2.5  Score=52.13  Aligned_cols=164  Identities=21%  Similarity=0.304  Sum_probs=89.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003487          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  538 (816)
Q Consensus       459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aE  538 (816)
                      .++...|..-|+++-++=-..+|++-..++-..+|.   ..+.+.++.++..+++|+.+++.+.+.++++...++.-.-|
T Consensus       740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e  816 (1174)
T KOG0933|consen  740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENE  816 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444554444445555555554444443   34677788888888888888877777777777666666666


Q ss_pred             HHHHhhhhhhH--------------HHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHH------------
Q 003487          539 YANVRLECNAA--------------DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK------------  592 (816)
Q Consensus       539 rdaArle~~aA--------------~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~------------  592 (816)
                      |.+.+++|.+-              ..--..|.+|+-.|+.++...-.+.-+++.++...+..++-+.            
T Consensus       817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~  896 (1174)
T KOG0933|consen  817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK  896 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH
Confidence            66666666543              3333445555555555555554444444444444333333333            


Q ss_pred             --HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487          593 --KKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (816)
Q Consensus       593 --rqlsslekeR~~lqsti~ALQEEKklLqskLRk  625 (816)
                        .+.+..+-+|+.|.-.+..++.|++.+-.+++.
T Consensus       897 ~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~  931 (1174)
T KOG0933|consen  897 CLSEKSDGELERKKLEHEVTKLESEKANARKEVEK  931 (1174)
T ss_pred             HHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHH
Confidence              333333444555555555555555555555443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.88  E-value=4.5  Score=43.81  Aligned_cols=40  Identities=20%  Similarity=0.344  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003487          467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  506 (816)
Q Consensus       467 qhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq  506 (816)
                      .|++.|-.++-.|...++....+...|-.....|....++
T Consensus       151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~  190 (312)
T smart00787      151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ  190 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444333333333333333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.85  E-value=3.1  Score=42.01  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=18.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487          461 DFAALEQHIEDLTQEKFALQRSLEAS  486 (816)
Q Consensus       461 ~faaLqqhIeDLT~EKfaLqR~L~~s  486 (816)
                      .+..++..|.++-.++-.|++.++..
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~   46 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEI   46 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777777777777777665553

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=94.81  E-value=15  Score=45.83  Aligned_cols=56  Identities=18%  Similarity=0.199  Sum_probs=35.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHH
Q 003487          704 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT  759 (816)
Q Consensus       704 RmI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlt  759 (816)
                      .=|..|.+-|..+..+++++=..|..-..+...++..-..+...++...+.|+-+.
T Consensus       607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (1201)
T PF12128_consen  607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK  662 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34667777777777777777666666666666666655555555555544444333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.75  E-value=1.8  Score=51.96  Aligned_cols=121  Identities=21%  Similarity=0.254  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 003487          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  543 (816)
Q Consensus       464 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaAr  543 (816)
                      -+.+-+..++-|-..|-++|+.--.+...|-.+....-..++.....+..+..+.--|+-|+.+..-+|+--..||+--+
T Consensus        96 e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~  175 (769)
T PF05911_consen   96 ELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSR  175 (769)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            33344445555556666666665666666666666666677777777777777888888888888888888889999888


Q ss_pred             hhhhhHHHHHHHHHHHHHhHHHHHHHHhhhh----------hhhHHHHhhh
Q 003487          544 LECNAADERAKILASEVIGLEEKALRLRSNE----------LKLERQLENS  584 (816)
Q Consensus       544 le~~aA~ERak~LAaEVV~LEEk~l~LRS~E----------LKlerele~l  584 (816)
                      ..+.+|.-.=.-=..-|.-||+.|.|||.-.          -+++.|++.+
T Consensus       176 ~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~  226 (769)
T PF05911_consen  176 RAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESL  226 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence            8888887554444455668999999999765          3456666665

The function of this family is unknown.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=94.74  E-value=0.82  Score=53.45  Aligned_cols=68  Identities=12%  Similarity=0.238  Sum_probs=38.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 003487          500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  572 (816)
Q Consensus       500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS  572 (816)
                      +.+++-+....+.-|.++++++++++.....+++.|+.+..-     .+....++.+-.++..|+.++..++.
T Consensus       258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~-----~d~~~ea~~~l~~~~~l~~ql~~l~~  325 (726)
T PRK09841        258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS-----VDLNLEAKAVLEQIVNVDNQLNELTF  325 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455556667777777777777777777777766532     12223333444455555555555543

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.73  E-value=1.5  Score=53.82  Aligned_cols=147  Identities=20%  Similarity=0.296  Sum_probs=106.3

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003487          454 YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  533 (816)
Q Consensus       454 ~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le  533 (816)
                      +-+.+......|+..|+.+-+.=-+--+.+++.....+.|--|.++|.+-----...+.++...++-|..++..+.+.+.
T Consensus       781 ~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~  860 (1174)
T KOG0933|consen  781 AKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD  860 (1174)
T ss_pred             hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566667777777666666666777888888888888888888876666667788889999999999999999999


Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHHHHH---HhHHHHHHHHhhh-h---hhhHHHHhhhHHHHHHHHHHhhhHHH
Q 003487          534 SFRNEYANVRLECNAADERAKILASEV---IGLEEKALRLRSN-E---LKLERQLENSQSEISSYKKKISSLEK  600 (816)
Q Consensus       534 ~l~aErdaArle~~aA~ERak~LAaEV---V~LEEk~l~LRS~-E---LKlerele~l~~E~~s~~rqlsslek  600 (816)
                      .+..++..++.+.+.-..+-+..--|+   +...++|++..++ +   -|++.++..+..+...++++++.+.+
T Consensus       861 ~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~  934 (1174)
T KOG0933|consen  861 KVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLK  934 (1174)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence            999999999998888887777777666   6667777765543 1   23344444455555555555554433

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.67  E-value=0.76  Score=51.69  Aligned_cols=104  Identities=16%  Similarity=0.306  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 003487          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  589 (816)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~  589 (816)
                      +++.+..+++.++.|+..-.-+...+..||.+++.|.+.+.+-=+       ..+++...+|-+-+|.+.++..+.....
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~-------~v~~~~~~a~~n~~kAqQ~lar~t~Q~q  147 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQERE-------AVRQELAAARQNLAKAQQELARLTKQAQ  147 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777888888877777888888888888888887765322       2355566667777777777766666666


Q ss_pred             HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 003487          590 SYKKKISSLEKERQDFQSTIEALQEEKKMMQ  620 (816)
Q Consensus       590 s~~rqlsslekeR~~lqsti~ALQEEKklLq  620 (816)
                      .++..|--|..+|..|.--.+.||-+.|.||
T Consensus       148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666677777666667777776666

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.61  E-value=7.7  Score=42.96  Aligned_cols=75  Identities=15%  Similarity=0.232  Sum_probs=35.7

Q ss_pred             HHHhHHHHHHHHhhhhhhhHHHHhhh------------HHHHHHHHHH-hhhHHHhhhhhHHHHHHHHHHHHHHHHHHH-
Q 003487          559 EVIGLEEKALRLRSNELKLERQLENS------------QSEISSYKKK-ISSLEKERQDFQSTIEALQEEKKMMQSKLR-  624 (816)
Q Consensus       559 EVV~LEEk~l~LRS~ELKlerele~l------------~~E~~s~~rq-lsslekeR~~lqsti~ALQEEKklLqskLR-  624 (816)
                      ++..|+.++.+++.+--.++.++.++            ..++.++..+ ...+..+...++..++.++++...++.+|. 
T Consensus       237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~  316 (457)
T TIGR01000       237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK  316 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44555555555555555555555443            2222222222 123344444455555555555555555555 


Q ss_pred             ---hhcCCCCcc
Q 003487          625 ---KASGSGKSI  633 (816)
Q Consensus       625 ---ka~~~gk~~  633 (816)
                         +|+..|.+.
T Consensus       317 ~~I~AP~dG~V~  328 (457)
T TIGR01000       317 GVIKAPEDGVLH  328 (457)
T ss_pred             CEEECCCCeEEE
Confidence               356666553

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.59  E-value=7.5  Score=43.03  Aligned_cols=54  Identities=19%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             hhhHHHHhhhHHHHHHHHHHhhhHH--------------------HhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487          575 LKLERQLENSQSEISSYKKKISSLE--------------------KERQDFQSTIEALQEEKKMMQSKLRKASG  628 (816)
Q Consensus       575 LKlerele~l~~E~~s~~rqlssle--------------------keR~~lqsti~ALQEEKklLqskLRka~~  628 (816)
                      ..++.++..+..++..++.++..+.                    +.+..+...++.++.+...++.+|.++-.
T Consensus       239 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~  312 (457)
T TIGR01000       239 ATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE  312 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555555555431                    23335666777777777777777775443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.58  E-value=3.1  Score=51.30  Aligned_cols=176  Identities=25%  Similarity=0.340  Sum_probs=97.5

Q ss_pred             cccccccCCchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 003487          449 NQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ  507 (816)
Q Consensus       449 ~~~~F~s~~~~~~faaL-------------------qqhIe--DLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ  507 (816)
                      +.--|...++-.+||.|                   ++|++  ||-++--+|++.+....+--+.|-+++++|....+.-
T Consensus       142 NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~  221 (1072)
T KOG0979|consen  142 NLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV  221 (1072)
T ss_pred             chhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            35568999999999864                   45554  5566666777777777777777777777776655543


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh-------hhhhhHHH
Q 003487          508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-------NELKLERQ  580 (816)
Q Consensus       508 ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS-------~ELKlere  580 (816)
                      ... ...++.+|.|+.-  --.+..+....||.+.++...-|.+--|.|-.|+..+|.+.-.|++       ..=.+.++
T Consensus       222 rer-~~~~~~Ie~l~~k--~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~  298 (1072)
T KOG0979|consen  222 RER-ERKKSKIELLEKK--KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE  298 (1072)
T ss_pred             HHH-HHHHHHHHHHHHh--ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH
Confidence            322 2233344443221  1122333445555555555555555555565665555555555544       11111111


Q ss_pred             --------------HhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 003487          581 --------------LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  627 (816)
Q Consensus       581 --------------le~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~  627 (816)
                                    +....+++.....+++++.+.+-+.|..|..+.+.--.+|..|.+..
T Consensus       299 ~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~  359 (1072)
T KOG0979|consen  299 LNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE  359 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence                          12244555556666666666666666666555555555555555433

>PF13166 AAA_13: AAA domain

Probab=94.54  E-value=3.5  Score=47.21  Aligned_cols=110  Identities=22%  Similarity=0.342  Sum_probs=50.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHH-------------HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487          504 YNQQRSVVNQLKSEMEKLQEEIKVQLV-------------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  570 (816)
Q Consensus       504 yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~-------------~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L  570 (816)
                      +.+-...+.+++..++.+.+.+..-..             .+..+....+.....+.+..+....+..+.-.|.+++...
T Consensus       324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~  403 (712)
T PF13166_consen  324 KEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH  403 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445555555555544443321             1223344445555555566666667777777776666543


Q ss_pred             hhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487          571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  615 (816)
Q Consensus       571 RS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE  615 (816)
                      .-..+  ...++.+..++..+++++..++++...+...+..++.+
T Consensus       404 ~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  446 (712)
T PF13166_consen  404 LIAKL--KEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKE  446 (712)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222  22222233333333334444444433444444444333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.50  E-value=6.4  Score=47.01  Aligned_cols=51  Identities=22%  Similarity=0.405  Sum_probs=30.1

Q ss_pred             HHHhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 003487          493 LAAENSSLTDSY-NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  543 (816)
Q Consensus       493 LA~ENsaLTd~y-NqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaAr  543 (816)
                      |..--.-|.+.| -.+..+-.++++.+..|+.+++.|+..+..+..|+...+
T Consensus       541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~  592 (717)
T PF10168_consen  541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR  592 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444 334445566667777777777777777777777666543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.49  E-value=4.9  Score=41.21  Aligned_cols=27  Identities=33%  Similarity=0.373  Sum_probs=15.0

Q ss_pred             hhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487          544 LECNAADERAKILASEVIGLEEKALRL  570 (816)
Q Consensus       544 le~~aA~ERak~LAaEVV~LEEk~l~L  570 (816)
                      .++..|.+|+..+...|..||+++..+
T Consensus       127 ~~Le~aEeR~e~~E~ki~eLE~el~~~  153 (237)
T PF00261_consen  127 QELERAEERAEAAESKIKELEEELKSV  153 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence            344455566666666666666555444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.46  E-value=0.47  Score=50.83  Aligned_cols=115  Identities=17%  Similarity=0.256  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 003487          509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  588 (816)
Q Consensus       509 ~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~  588 (816)
                      ..+.+|+.++++.+.|.+.+..-|..+..+-+- ..+..+..+.-+.|-.|...|++++.+|..++-.+.+|++.+..+.
T Consensus         9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~-~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~   87 (314)
T PF04111_consen    9 LLLEQLDKQLEQAEKERDTYQEFLKKLEEESDS-EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL   87 (314)
T ss_dssp             ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999888888631111 1122333334444444444444444444444444444444444444


Q ss_pred             HHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          589 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       589 ~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                      ..++..-...-+++..++..+-.+++|...+..+++
T Consensus        88 ~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~  123 (314)
T PF04111_consen   88 EELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE  123 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444445555555555565555555444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=94.39  E-value=19  Score=45.07  Aligned_cols=62  Identities=24%  Similarity=0.408  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH-HHHHHHHHhHHHHHHHHh
Q 003487          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA-KILASEVIGLEEKALRLR  571 (816)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa-k~LAaEVV~LEEk~l~LR  571 (816)
                      .+++++.++.+.+.+++.....+..++.++.+.+.++..+.+.. ..+..++-.|+.++.++.
T Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~  698 (1201)
T PF12128_consen  636 KIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK  698 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555556666556666777777777777776665444 345555666666665554

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.30  E-value=3.8  Score=50.27  Aligned_cols=101  Identities=27%  Similarity=0.405  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh--------------hhhh
Q 003487          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR--------------SNEL  575 (816)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR--------------S~EL  575 (816)
                      .+.-|+-++|.|++-+..-...||-+++|..+-=-..+.+.      +-|.-.||.+-.+||              -+..
T Consensus       326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~s------s~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~q  399 (1243)
T KOG0971|consen  326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAAS------SYQFKQLEQQNARLKDALVRLRDLSASEKQDHQ  399 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc------hHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            34456666666666666666777777777766422221111      123334444444443              3456


Q ss_pred             hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487          576 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (816)
Q Consensus       576 Klerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK  616 (816)
                      |+.+|+|..+.|+.-++++-+-|..+=..+.++|.-|||.-
T Consensus       400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV  440 (1243)
T KOG0971|consen  400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV  440 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888888888877777777888888877754

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=94.26  E-value=2.8  Score=50.38  Aligned_cols=152  Identities=22%  Similarity=0.273  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003487          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL----TDSYNQ----QRSVVNQLKSEMEKLQEEIKVQLVELESFR  536 (816)
Q Consensus       465 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaL----Td~yNq----Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~  536 (816)
                      |+.-+++|-.|.-.|.+.|+..+.-......+...+    ..+-.+    -+..+.-+++++..++.+.+.....+..+.
T Consensus         1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq   80 (775)
T PF10174_consen    1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ   80 (775)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence            445677888888888888888777666665554331    011111    122344445555555555555555555555


Q ss_pred             HHHHHHhhhhh-------hHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHH
Q 003487          537 NEYANVRLECN-------AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI  609 (816)
Q Consensus       537 aErdaArle~~-------aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti  609 (816)
                      .|. .++-+.+       .+......+.. +=-.++.+.++       ..|.+.+..|+..+++.+..++-.=..++-++
T Consensus        81 eEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl-------~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l  151 (775)
T PF10174_consen   81 EEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERL-------QAERERLQRELERLRKTLEELQLRIETQQQTL  151 (775)
T ss_pred             HHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554 3332222       33333333444 33334444444       34444555555555555555555555667778


Q ss_pred             HHHHHHHHHHHHHHHh
Q 003487          610 EALQEEKKMMQSKLRK  625 (816)
Q Consensus       610 ~ALQEEKklLqskLRk  625 (816)
                      ++.+++.+.|+.+|..
T Consensus       152 ~~~~eei~kL~e~L~~  167 (775)
T PF10174_consen  152 DKADEEIEKLQEMLQS  167 (775)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8888888888888863

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.12  E-value=0.014  Score=67.46  Aligned_cols=157  Identities=30%  Similarity=0.410  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 003487          464 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES-----  534 (816)
Q Consensus       464 aLqqhIeDLT~EKfaLqR~L~~s~~l~Es----LA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~-----  534 (816)
                      -|++.|.+|.+||-.|+-.+...+.-..+    ..+.+..+..+++.-...+.+|++++++++..+.-+...++.     
T Consensus       197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei  276 (713)
T PF05622_consen  197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI  276 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888888888887666544433222    224455566677777777777777776665433333322222     


Q ss_pred             -------------------hHHHHHHHhhhhhhHHHHHHHHHHH-----------------HHhHHHHHHHHhhhhhhhH
Q 003487          535 -------------------FRNEYANVRLECNAADERAKILASE-----------------VIGLEEKALRLRSNELKLE  578 (816)
Q Consensus       535 -------------------l~aErdaArle~~aA~ERak~LAaE-----------------VV~LEEk~l~LRS~ELKle  578 (816)
                                         ++-|+|..|-.+    +|+..|.++                 |-.||++...+.-..+.||
T Consensus       277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a----~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LE  352 (713)
T PF05622_consen  277 DELRQENEELQAEAREARALRDELDELREKA----DRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLE  352 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               233333333222    234444443                 3344444443333445556


Q ss_pred             HHHhh---hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          579 RQLEN---SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       579 rele~---l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                      .++..   ++..+..|++++..++.++.+...-++.|+.|.+.|+.++.
T Consensus       353 eel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~  401 (713)
T PF05622_consen  353 EELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLE  401 (713)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66555   56677778888877777777766666666666666655554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.05  E-value=2  Score=47.03  Aligned_cols=91  Identities=16%  Similarity=0.222  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 003487          475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  554 (816)
Q Consensus       475 EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak  554 (816)
                      ++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-...  ......+..||.+.......+.++..
T Consensus        66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~  143 (319)
T PF09789_consen   66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE  143 (319)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence            5556666777777777777888877777776655555555555544443321  12222334677777777777777777


Q ss_pred             HHHHHHHhHHHHH
Q 003487          555 ILASEVIGLEEKA  567 (816)
Q Consensus       555 ~LAaEVV~LEEk~  567 (816)
                      .|.-++..+-+..
T Consensus       144 qLe~d~qs~lDEk  156 (319)
T PF09789_consen  144 QLERDLQSLLDEK  156 (319)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776666655543

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.92  E-value=9.9  Score=42.02  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=22.6

Q ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 003487          532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKAL  568 (816)
Q Consensus       532 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l  568 (816)
                      +..+..|+...+..+++-.-..+.+-.++-.|+.++.
T Consensus       256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~  292 (498)
T TIGR03007       256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE  292 (498)
T ss_pred             HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence            3444556666666666666666666666666666653

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=93.87  E-value=2.6  Score=43.03  Aligned_cols=93  Identities=26%  Similarity=0.307  Sum_probs=67.3

Q ss_pred             HHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487          494 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  571 (816)
Q Consensus       494 A~ENsaLTd~yNqQ--~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR  571 (816)
                      --+|=+|+.+|-..  ..-..+|...+++|+.+++.+.-.++.+-.+|-..|+++          +.++-.||.+-..+-
T Consensus       119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~----------~~~L~~Le~~W~~~v  188 (221)
T PF05700_consen  119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEA----------GEELRYLEQRWKELV  188 (221)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHH
Confidence            34566677777433  345578889999999999999999999999999887764          345556777777666


Q ss_pred             hhhhhhHHHHhhhHHHHHHHHHHhh
Q 003487          572 SNELKLERQLENSQSEISSYKKKIS  596 (816)
Q Consensus       572 S~ELKlerele~l~~E~~s~~rqls  596 (816)
                      +.-+.++....+|..||.+.+++..
T Consensus       189 ~kn~eie~a~~~Le~ei~~l~~~~~  213 (221)
T PF05700_consen  189 SKNLEIEVACEELEQEIEQLKRKAA  213 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666655

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.83  E-value=9.8  Score=43.30  Aligned_cols=35  Identities=37%  Similarity=0.403  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 003487          462 FAALEQHIEDLTQEKFALQRSL-EASRALSESLAAE  496 (816)
Q Consensus       462 faaLqqhIeDLT~EKfaLqR~L-~~s~~l~EsLA~E  496 (816)
                      ...+++-|+|+...+-.|+-.. ++.+.|++.|+.-
T Consensus        89 l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~  124 (420)
T COG4942          89 LKKLRKQIADLNARLNALEVQEREQRRRLAEQLAAL  124 (420)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555554444444433 5555566666553

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.78  E-value=5.5  Score=40.22  Aligned_cols=13  Identities=15%  Similarity=0.146  Sum_probs=7.5

Q ss_pred             ccccccccccchh
Q 003487          688 RLALEGLAVNIPH  700 (816)
Q Consensus       688 ~~~l~g~~vsIp~  700 (816)
                      ++.+.|+...|+.
T Consensus       222 ~i~~~gs~s~i~d  234 (302)
T PF10186_consen  222 PITPSGSRSTIID  234 (302)
T ss_pred             CcccCccccchhh
Confidence            3555666666555

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.72  E-value=8  Score=48.58  Aligned_cols=153  Identities=22%  Similarity=0.298  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH-----------HHHHHHHHHHHHHHHHHH
Q 003487          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN-----------QLKSEMEKLQEEIKVQLV  530 (816)
Q Consensus       462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~-----------qLk~dmEqLq~Ei~aQ~~  530 (816)
                      ..-|+.-||..-.+|+.+.-+++.++..-+.+-.|++.|...-+.-...+.           .++.+++.++.++.--+.
T Consensus       414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~  493 (1293)
T KOG0996|consen  414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK  493 (1293)
T ss_pred             HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            445666777778888888888888888777777777777666555443333           233444445555444444


Q ss_pred             HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh-------hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh
Q 003487          531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-------NELKLERQLENSQSEISSYKKKISSLEKERQ  603 (816)
Q Consensus       531 ~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS-------~ELKlerele~l~~E~~s~~rqlsslekeR~  603 (816)
                      .+-..++|.+-|+.+...-..|.-.+-.-|..|..+++..+-       ...+++.++..++.|+....+.+..+-++-+
T Consensus       494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~  573 (1293)
T KOG0996|consen  494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER  573 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence            555556666666666666556665566666666666665321       1223444555556666666666666666666


Q ss_pred             hhHHHHHHHHH
Q 003487          604 DFQSTIEALQE  614 (816)
Q Consensus       604 ~lqsti~ALQE  614 (816)
                      .|.+.++++..
T Consensus       574 ~~~~~~~~~rq  584 (1293)
T KOG0996|consen  574 NLKSQLNKLRQ  584 (1293)
T ss_pred             HHHHHHHHHHH
Confidence            66666666653

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.68  E-value=12  Score=44.06  Aligned_cols=58  Identities=22%  Similarity=0.172  Sum_probs=45.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH-------HHHHhhhHHHHHHHHHh
Q 003487          706 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELLTAQNM  763 (816)
Q Consensus       706 I~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsr-------KLE~qTQRLELltsq~m  763 (816)
                      ++|.+++|.|+-.....+---|....+.|-..+..+-|+..       +||-+.+.|.|..=+.|
T Consensus       448 ~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m  512 (581)
T KOG0995|consen  448 FSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSM  512 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888888888888888888888888889888888888765       47777777766655555

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=93.67  E-value=0.53  Score=41.11  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 003487          507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR  569 (816)
Q Consensus       507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~  569 (816)
                      ....+..|+..+.++.+.+.++..++..+..|||.|......|-+....|-+||-.|..+.-.
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~   65 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE   65 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999999888888888777766443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=93.64  E-value=5.1  Score=50.33  Aligned_cols=127  Identities=20%  Similarity=0.265  Sum_probs=72.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (816)
Q Consensus       460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr  539 (816)
                      +=|.-.--.|.+|+   ....|-+.++++|-                |++++++..++...+++.|+.-+..|.      
T Consensus      1164 ~CF~~WD~il~~L~---~rt~rl~~~A~~l~----------------~tGv~gay~s~f~~me~kl~~ir~il~------ 1218 (1758)
T KOG0994|consen 1164 ECFQTWDAILQELA---LRTHRLINRAKELK----------------QTGVLGAYASRFLDMEEKLEEIRAILS------ 1218 (1758)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHhh----------------hccCchhhHhHHHHHHHHHHHHHHHhc------
Confidence            34555445555554   34566677777664                556666666666555554332222221      


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487          540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (816)
Q Consensus       540 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK  616 (816)
                           ..+-+-|-...|+.+.-.|+.++..++-.--..|..|..+..++....+.|++|++|+..|..+...|.|.-
T Consensus      1219 -----~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1219 -----APSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred             -----CCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                 111122223334445555555554444333334666667777777778889999999888888887777654

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=93.62  E-value=7.1  Score=39.02  Aligned_cols=32  Identities=25%  Similarity=0.274  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487          463 AALEQHIEDLTQEKFALQRSLEASRALSESLA  494 (816)
Q Consensus       463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA  494 (816)
                      ..|+|+|.||-..=-.+.+++.+.......|.
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le   57 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLE   57 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999998887777777776666555544

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=93.57  E-value=0.02  Score=66.18  Aligned_cols=76  Identities=25%  Similarity=0.385  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHH---HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 003487          546 CNAADERAKILASEVIGLEEKALR---LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  621 (816)
Q Consensus       546 ~~aA~ERak~LAaEVV~LEEk~l~---LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqs  621 (816)
                      ...-.|+-..|---.+.||+.+.+   +|+..-.+++++..+..++....+++..++.|...|+..+++|++||..|..
T Consensus       334 vk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~  412 (713)
T PF05622_consen  334 VKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQE  412 (713)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445555555443   3333333344555555554444555555555555566666666666655543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.55  E-value=9.7  Score=38.80  Aligned_cols=44  Identities=20%  Similarity=0.293  Sum_probs=26.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003487          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD  502 (816)
Q Consensus       459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd  502 (816)
                      ..-|.-+..---|.|..=+.|.+.|-...+-+..-...|..++.
T Consensus         8 e~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~   51 (201)
T PF13851_consen    8 EKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMA   51 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666777777666666665555555555554443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.32  E-value=5.2  Score=43.80  Aligned_cols=31  Identities=16%  Similarity=0.283  Sum_probs=17.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASR  487 (816)
Q Consensus       457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~  487 (816)
                      .....+.+||+-|.+|-+|-..|--...+-.
T Consensus       157 ~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~  187 (306)
T PF04849_consen  157 QKCIQLEALQEKLKSLEEENEQLRSEASQLK  187 (306)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344566666666666666655544433333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF13514 AAA_27: AAA domain

Probab=93.31  E-value=12  Score=46.22  Aligned_cols=48  Identities=19%  Similarity=0.451  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 003487          586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI  633 (816)
Q Consensus       586 ~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~~gk~~  633 (816)
                      ..|..+++....+++.+..++.-++.+.++-..+..+++.+...|.++
T Consensus       452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  499 (1111)
T PF13514_consen  452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVP  499 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            467788888888888888888888888888899999999888877764

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=93.30  E-value=11  Score=47.55  Aligned_cols=62  Identities=15%  Similarity=0.213  Sum_probs=45.7

Q ss_pred             HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 003487          495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  556 (816)
Q Consensus       495 ~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L  556 (816)
                      .|-.+.-...+.-+.++.+|...||.|+.++..+-.+-+.+..+.+.|+.++..|..-.+.|
T Consensus      1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~l 1666 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEIL 1666 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445566777788999999999999888777777777777788887777776665533

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.27  E-value=3.8  Score=39.84  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=14.6

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003487          491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE  523 (816)
Q Consensus       491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~  523 (816)
                      ..|..|-+.+-++.+.....+..++++...++.
T Consensus        91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~  123 (191)
T PF04156_consen   91 QQLQEELDQLQERIQELESELEKLKEDLQELRE  123 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            333344444444444444444444444444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.23  E-value=2.2  Score=46.65  Aligned_cols=87  Identities=17%  Similarity=0.275  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-------------------HHHHHHHHHHHHH
Q 003487          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-------------------SVVNQLKSEMEKL  521 (816)
Q Consensus       461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~-------------------~~v~qLk~dmEqL  521 (816)
                      ++..|.+.+.|..++.-.|...+..-+.--..+-.++-.|-.+.+.+.                   ..+..++...++|
T Consensus        66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL  145 (319)
T PF09789_consen   66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL  145 (319)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            666677777777777777776666666665666666666666555543                   2457788999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhhhhh
Q 003487          522 QEEIKVQLVELESFRNEYANVRLECN  547 (816)
Q Consensus       522 q~Ei~aQ~~~le~l~aErdaArle~~  547 (816)
                      +.++++..-+.+-+..|||+.+--|.
T Consensus       146 e~d~qs~lDEkeEl~~ERD~yk~K~~  171 (319)
T PF09789_consen  146 ERDLQSLLDEKEELVTERDAYKCKAH  171 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876543

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=93.23  E-value=10  Score=38.51  Aligned_cols=134  Identities=20%  Similarity=0.266  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 003487          479 LQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  546 (816)
Q Consensus       479 LqR~L~~s~~l~EsLA~ENsaLTd~yNq------------Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~  546 (816)
                      |.+++..-..-++.+|..+..+......            +......+...+++++...+.+...|+..+..|.++-.+.
T Consensus        58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~  137 (236)
T cd07651          58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI  137 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4444444444445555555544444432            2333445566677778888888888888888888877766


Q ss_pred             hhHHHHHHH-HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH--HHHHH
Q 003487          547 NAADERAKI-LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKKM  618 (816)
Q Consensus       547 ~aA~ERak~-LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ--EEKkl  618 (816)
                      ..+...... ...|+--++.|+.+...+--+.+++.+....+...++..-.      .++-.+.+.||  ||.+.
T Consensus       138 e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~------~~~~~~~~~~Q~lEe~Ri  206 (236)
T cd07651         138 NSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN------REWKAALDDFQDLEEERI  206 (236)
T ss_pred             HHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            665554322 23566667777776666666666666665555555544332      45677888888  55543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=93.22  E-value=13  Score=41.94  Aligned_cols=66  Identities=20%  Similarity=0.254  Sum_probs=48.4

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487          476 KFALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (816)
Q Consensus       476 KfaLqR~L~-~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda  541 (816)
                      -.+|+-+++ +.+++.-.|.++-++-.+..-+-.+++.-|..+.|||+++|.-.......+..+.|.
T Consensus       105 ~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~K  171 (561)
T KOG1103|consen  105 AASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDK  171 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444443 578899999999988877776667788899999999999988776666555444443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.17  E-value=7.6  Score=47.86  Aligned_cols=124  Identities=19%  Similarity=0.294  Sum_probs=80.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh-----------HHHHHHHHHHHHHhHHHH------
Q 003487          504 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA-----------ADERAKILASEVIGLEEK------  566 (816)
Q Consensus       504 yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~a-----------A~ERak~LAaEVV~LEEk------  566 (816)
                      .-.-...+++|++.-|+|.+++..-.+.++.|++-.|||- .+.+           -.||.|.|--||-.||+-      
T Consensus       405 lE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl-GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQ  483 (1243)
T KOG0971|consen  405 LEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL-GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQ  483 (1243)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334567778888888888888888888888888888862 2221           124555555555555431      


Q ss_pred             -HHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487          567 -ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (816)
Q Consensus       567 -~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~  628 (816)
                       +---|--|+-|++|++-++--+.-+.+++.++.+---+..-||-..+|=-..||..|+....
T Consensus       484 L~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d  546 (1243)
T KOG0971|consen  484 LQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD  546 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             01113345666777776666666677777777666666666777777888899999985443

>PRK11281 hypothetical protein; Provisional

Probab=93.01  E-value=2.8  Score=52.18  Aligned_cols=14  Identities=21%  Similarity=0.162  Sum_probs=6.9

Q ss_pred             HHHHHHHhHHHHHH
Q 003487          555 ILASEVIGLEEKAL  568 (816)
Q Consensus       555 ~LAaEVV~LEEk~l  568 (816)
                      .|-+|...|+.+..
T Consensus       196 ~l~ae~~~l~~~~~  209 (1113)
T PRK11281        196 LLQAEQALLNAQND  209 (1113)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44455555555533

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=92.95  E-value=13  Score=45.07  Aligned_cols=164  Identities=20%  Similarity=0.260  Sum_probs=100.4

Q ss_pred             cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HhhHHHHHHHHHHHHHHHHH
Q 003487          453 FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------QQRSVVNQLKSEMEKLQEEI  525 (816)
Q Consensus       453 F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yN-------qQ~~~v~qLk~dmEqLq~Ei  525 (816)
                      |....++..-.+||..|+.=-..=-+|.|.|.....=.+.|-......+..-+       .-......+|.+|+++.-++
T Consensus       217 ~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL  296 (775)
T PF10174_consen  217 LQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLEL  296 (775)
T ss_pred             hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33445555566888888887777777888877755444444332222222111       12233344555566666665


Q ss_pred             HHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh
Q 003487          526 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF  605 (816)
Q Consensus       526 ~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~l  605 (816)
                      .---.++.++.++...+--...+..++--.|=-++-..|.++-.|.++.=.|+-+|+.....+....+++..++.|+..+
T Consensus       297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~  376 (775)
T PF10174_consen  297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL  376 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554444555556666666666677777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHH
Q 003487          606 QSTIEALQEEK  616 (816)
Q Consensus       606 qsti~ALQEEK  616 (816)
                      ...|+-|.+.-
T Consensus       377 ~~Ei~~l~d~~  387 (775)
T PF10174_consen  377 QGEIEDLRDML  387 (775)
T ss_pred             HHHHHHHHHHH
Confidence            66666665544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=92.78  E-value=12  Score=48.86  Aligned_cols=161  Identities=25%  Similarity=0.360  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHhhhH-------HHHHHHH
Q 003487          461 DFAALEQHIEDLTQEKFALQRSLEASRALS---------------------------ESLAAENSS-------LTDSYNQ  506 (816)
Q Consensus       461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~---------------------------EsLA~ENsa-------LTd~yNq  506 (816)
                      |-++|.|-++-+.++--.|+|.|-+.++-.                           -.|-.||.+       |.+.+|.
T Consensus      1175 e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~k 1254 (1822)
T KOG4674|consen 1175 ENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEK 1254 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888887777777888777666544                           123344444       4445555


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH--------HHHHHHHHHhHHHHHHHHhhhhhhhH
Q 003487          507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER--------AKILASEVIGLEEKALRLRSNELKLE  578 (816)
Q Consensus       507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ER--------ak~LAaEVV~LEEk~l~LRS~ELKle  578 (816)
                      ..-.+.-|+..+.+|..+|..-.+++.-++.|-+.-+++.++--+-        -+.|.+|+-.|++++-.       .+
T Consensus      1255 l~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~-------ke 1327 (1822)
T KOG4674|consen 1255 LNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEE-------KE 1327 (1822)
T ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-------HH
Confidence            5555555666666666677777778888888888888888877665        56778888888877662       25


Q ss_pred             HHHhhhHHHHHHHH----HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487          579 RQLENSQSEISSYK----KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (816)
Q Consensus       579 rele~l~~E~~s~~----rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~  628 (816)
                      +.++.+..++.+++    .++-.+..+++.+...|+.+-.=+..|-..+....+
T Consensus      1328 ~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~ 1381 (1822)
T KOG4674|consen 1328 NLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNA 1381 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666665555    777777778888777777776666666666664443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=92.76  E-value=13  Score=42.76  Aligned_cols=141  Identities=16%  Similarity=0.303  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 003487          479 LQRSLEASRALSESLAAENSSLTDSYNQ---QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  555 (816)
Q Consensus       479 LqR~L~~s~~l~EsLA~ENsaLTd~yNq---Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~  555 (816)
                      +..-|...++.+..|..|-+.|..+|-=   -...+.++..+++.++..+..-...++.-..=|-..+-...+..++-..
T Consensus       311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~  390 (560)
T PF06160_consen  311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE  390 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence            4445555566666666666666666521   2233444555555555544444444444444455555666677777788


Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh-------HHHHHHHHHHHHHHHHHHH
Q 003487          556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF-------QSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       556 LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~l-------qsti~ALQEEKklLqskLR  624 (816)
                      +..+...+-+.+..||.+|.+.+..|..++.++..++|+++     |.+|       ...+....++-..|...|.
T Consensus       391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le-----k~nLPGlp~~y~~~~~~~~~~i~~l~~~L~  461 (560)
T PF06160_consen  391 IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE-----KSNLPGLPEDYLDYFFDVSDEIEELSDELN  461 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888899999999999999999888888888887     4444       2344444455555555554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=92.72  E-value=12  Score=48.86  Aligned_cols=155  Identities=24%  Similarity=0.330  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----
Q 003487          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF-----  535 (816)
Q Consensus       461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l-----  535 (816)
                      +|.-|--|.+.++.++--|.+.+.+=....+.|-++|+.+-..==+---.+..++.++|.|+.++.-....+...     
T Consensus        81 e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~  160 (1822)
T KOG4674|consen   81 ELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLS  160 (1822)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666666677777777777766667777766666652111111122222334444444443333333322     


Q ss_pred             ----------------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhh----hhhhHHHHhhhHHHHHHHHHHh
Q 003487          536 ----------------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN----ELKLERQLENSQSEISSYKKKI  595 (816)
Q Consensus       536 ----------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~----ELKlerele~l~~E~~s~~rql  595 (816)
                                      ..++.+--++...--.-+.-|..|.-.--++.+.+|-.    .+.|+..|.++..+...|..++
T Consensus       161 e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~  240 (1822)
T KOG4674|consen  161 ELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKN  240 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            22233333333333333445556666666777777777    7778888888888888888888


Q ss_pred             hhHHHhhhhhHHHHHHHHHH
Q 003487          596 SSLEKERQDFQSTIEALQEE  615 (816)
Q Consensus       596 sslekeR~~lqsti~ALQEE  615 (816)
                      ..+...+.+|...|.-+..+
T Consensus       241 ~~l~q~~~eLs~~ie~~~~~  260 (1822)
T KOG4674|consen  241 KSLKQQNEELSKKIESLNLE  260 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888888766665543

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=92.67  E-value=5.7  Score=43.83  Aligned_cols=34  Identities=18%  Similarity=0.124  Sum_probs=21.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA  494 (816)
Q Consensus       461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA  494 (816)
                      ....+.+.|.++.++...++..+...++..+.|-
T Consensus       198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~  231 (498)
T TIGR03007       198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALK  231 (498)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777777777766666665555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=92.66  E-value=14  Score=43.52  Aligned_cols=91  Identities=27%  Similarity=0.274  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHH--hhhh
Q 003487          470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-NEYANV--RLEC  546 (816)
Q Consensus       470 eDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~-aErdaA--rle~  546 (816)
                      ++-.+|--+|+..|+.-..-.+.+.++-..++..+-+....+.+.+...++|+++++...-..+-+. +|..-+  +.-|
T Consensus       324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v  403 (594)
T PF05667_consen  324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV  403 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3334455556666666666777777777777777777777777777778888777766655444442 122222  3334


Q ss_pred             hhHHHHHHHHHHHH
Q 003487          547 NAADERAKILASEV  560 (816)
Q Consensus       547 ~aA~ERak~LAaEV  560 (816)
                      .+..+|-..|+.+-
T Consensus       404 ~~s~~rl~~L~~qW  417 (594)
T PF05667_consen  404 EASEQRLVELAQQW  417 (594)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555655555543

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=92.63  E-value=30  Score=42.00  Aligned_cols=61  Identities=16%  Similarity=0.183  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHhhhhccccCCCC
Q 003487          714 SELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPD  774 (816)
Q Consensus       714 sELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~ma~e~~~a~~~d  774 (816)
                      .-|+.=|..|..+=...-++-..|+.+|-+|.|||++...|-|-++.+-=+.--++.|+|.
T Consensus       587 qqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE  647 (961)
T KOG4673|consen  587 QQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE  647 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence            3333334444444444455667899999999999999999999888775544444555553

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=92.56  E-value=8.1  Score=42.33  Aligned_cols=63  Identities=21%  Similarity=0.385  Sum_probs=51.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003487          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  528 (816)
Q Consensus       459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ  528 (816)
                      -.|+.|+-.++++       -.|.|+=+-+|-+.|-..|..|+.++..-...++...+.|.+|+-|+..-
T Consensus        61 y~Didavt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k  123 (306)
T PF04849_consen   61 YNDIDAVTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMK  123 (306)
T ss_pred             hhhHHHHHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666665       46889999999999999999999999888888888888888888886543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=92.55  E-value=6.9  Score=48.56  Aligned_cols=131  Identities=30%  Similarity=0.340  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhhhHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 003487          483 LEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  555 (816)
Q Consensus       483 L~~s~~l~EsLA~ENsaL-------Td~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~  555 (816)
                      +....+..+.|..|-+++       ++.|+-|-..-..|+.+.++|+..++-...+++.+..|+.-++...        .
T Consensus       443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l--------~  514 (1041)
T KOG0243|consen  443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL--------K  514 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence            333444455555555554       4445444455559999999999999999999999999998865443        3


Q ss_pred             HHHHHHh----HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          556 LASEVIG----LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       556 LAaEVV~----LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                      +.-+||.    +|+++.+.   ..++++.+++...+++.+-+++....+.=++=+..+.-++.+-..+-.-|-
T Consensus       515 ~~e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~  584 (1041)
T KOG0243|consen  515 EEEEIISQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLH  584 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHH
Confidence            3344443    44444433   778899999999999999999998888777777777777766544433333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=92.53  E-value=5.2  Score=46.66  Aligned_cols=61  Identities=20%  Similarity=0.272  Sum_probs=49.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH-----hhhHHHHHHHHHhhh
Q 003487          705 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-----QTQRLELLTAQNMAN  765 (816)
Q Consensus       705 mI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~-----qTQRLELltsq~ma~  765 (816)
                      +..-|.+|=.+|++++..--++|......+.+|++.=..|+-.|+.     ++=+.|+..=+.|..
T Consensus       322 L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe  387 (546)
T KOG0977|consen  322 LEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLE  387 (546)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence            4455677777888899999999999999999999888888777664     556789999999876

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=92.49  E-value=19  Score=39.31  Aligned_cols=25  Identities=16%  Similarity=0.429  Sum_probs=17.8

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          600 KERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       600 keR~~lqsti~ALQEEKklLqskLR  624 (816)
                      -||+.|.-.+..|.+|-+-|..-|.
T Consensus       157 dEke~llesvqRLkdEardlrqela  181 (333)
T KOG1853|consen  157 DEKEVLLESVQRLKDEARDLRQELA  181 (333)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677788888888777665544

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=92.44  E-value=3.2  Score=43.82  Aligned_cols=25  Identities=16%  Similarity=0.210  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHH----hhcCCCCcc
Q 003487          609 IEALQEEKKMMQSKLR----KASGSGKSI  633 (816)
Q Consensus       609 i~ALQEEKklLqskLR----ka~~~gk~~  633 (816)
                      +.+++.+....+..|.    +++-.|...
T Consensus       192 ~~~~~a~l~~a~~~l~~~~I~AP~dG~V~  220 (346)
T PRK10476        192 RAAREAALAIAELHLEDTTVRAPFDGRVV  220 (346)
T ss_pred             HHHHHHHHHHHHHHhhcCEEECCCCcEEE
Confidence            3344444343444443    356666653

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.41  E-value=12  Score=44.17  Aligned_cols=153  Identities=17%  Similarity=0.232  Sum_probs=85.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---hhhh
Q 003487          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE---LESF  535 (816)
Q Consensus       459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~---le~l  535 (816)
                      .....-|++-|+-||+|=-.--+.-.++-.--=.|-.|-+.|-.+|-+.-.....++.+|+++++-+.....-   ...-
T Consensus         7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~   86 (772)
T KOG0999|consen    7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD   86 (772)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4456678888888888877666666666666667777888888877777777777777777777654333221   1111


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487          536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  613 (816)
Q Consensus       536 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ  613 (816)
                      -.||.-+-+.--+|.|-  .+---|..||..+-++|-.--.-+.|.+.+-...+.+..--..++.+|..|.+.|..+.
T Consensus        87 g~e~EesLLqESaakE~--~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~K  162 (772)
T KOG0999|consen   87 GEEREESLLQESAAKEE--YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYK  162 (772)
T ss_pred             chhhHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence            22333333332333322  22233455555555554333333333334444444444444456667777666665544

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=92.40  E-value=9.2  Score=46.76  Aligned_cols=139  Identities=19%  Similarity=0.229  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHhhHHHHHH----HHHHHHHHHHHHHH--
Q 003487          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD----------SYNQQRSVVNQL----KSEMEKLQEEIKVQ--  528 (816)
Q Consensus       465 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd----------~yNqQ~~~v~qL----k~dmEqLq~Ei~aQ--  528 (816)
                      |+-...+||.+|..++-+|--|+.-+|.+-+--..|-.          +.-+-.--+..+    ...++.++++|.-|  
T Consensus       321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn  400 (1265)
T KOG0976|consen  321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN  400 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455678999999999999999888877654433321          122222223333    33333344433332  


Q ss_pred             -HHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh----hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh
Q 003487          529 -LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS----NELKLERQLENSQSEISSYKKKISSLEKERQ  603 (816)
Q Consensus       529 -~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS----~ELKlerele~l~~E~~s~~rqlsslekeR~  603 (816)
                       ..-++..+-.-.+|.-+...|-||+-.|-.+.+-++-+|-.+++    .+.+.++-++.-..=|.+.+...-+++|.|.
T Consensus       401 ~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrK  480 (1265)
T KOG0976|consen  401 HIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRK  480 (1265)
T ss_pred             hhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcc
Confidence             23345557777899999999999999999999999999887753    5677778777766667777777777776663

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.31  E-value=8.3  Score=44.23  Aligned_cols=115  Identities=24%  Similarity=0.256  Sum_probs=71.4

Q ss_pred             HHHhhhHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH
Q 003487          493 LAAENSSLTDSYNQQRSV-------VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE  565 (816)
Q Consensus       493 LA~ENsaLTd~yNqQ~~~-------v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE  565 (816)
                      |-.||=.|.-|||..--+       ..+-=.+-++.++||-+-....+++..|-         -.-|-+.|+-|+-.|-.
T Consensus       248 lkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~En---------lqmr~qqleeentelRs  318 (502)
T KOG0982|consen  248 LKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKEN---------LQMRDQQLEEENTELRS  318 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence            444666666666653332       22223333444444444333333333332         23366778888888888


Q ss_pred             HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487          566 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (816)
Q Consensus       566 k~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK  616 (816)
                      -+-+||+..=|+..+.....+.++.++-|+.-..+.|-.+-..+-..|+||
T Consensus       319 ~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek  369 (502)
T KOG0982|consen  319 LIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK  369 (502)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888888777777888877777777777766666666666666

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=92.25  E-value=11  Score=38.60  Aligned_cols=155  Identities=19%  Similarity=0.235  Sum_probs=92.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003487          459 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  533 (816)
Q Consensus       459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l----~EsLA-~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le  533 (816)
                      ..+-+.|++.|++...+--.+++.|++-..-    .+.++ .--+.|..+.++.-..+.+++.++-.+..++..+....+
T Consensus        37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~  116 (240)
T PF12795_consen   37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE  116 (240)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence            3455677888888888888888877766432    11111 012456777777777788888888888888777777777


Q ss_pred             hhHHHHHHHhhhhhhHHHHHHH----------------HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 003487          534 SFRNEYANVRLECNAADERAKI----------------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS  597 (816)
Q Consensus       534 ~l~aErdaArle~~aA~ERak~----------------LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlss  597 (816)
                      .+......++....++..+-..                |-+|+..|+.++..++-.-+-.-.-.+=++..+.-+.+++.-
T Consensus       117 ~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~  196 (240)
T PF12795_consen  117 RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR  196 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777766666655433                344444444444433222111111111133444455666666


Q ss_pred             HHHhhhhhHHHHHHHH
Q 003487          598 LEKERQDFQSTIEALQ  613 (816)
Q Consensus       598 lekeR~~lqsti~ALQ  613 (816)
                      ++...+.|+..|+...
T Consensus       197 l~~~l~~Lq~~ln~~R  212 (240)
T PF12795_consen  197 LQQQLQALQNLLNQKR  212 (240)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6667777777776655

>PF13514 AAA_27: AAA domain

Probab=92.09  E-value=15  Score=45.40  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487          509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (816)
Q Consensus       509 ~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda  541 (816)
                      ..+..++.+++.+++++......++.+..+++.
T Consensus       801 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~  833 (1111)
T PF13514_consen  801 EERERLQEQLEELEEELEQAEEELEELEAELAE  833 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555544

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.05  E-value=19  Score=43.27  Aligned_cols=113  Identities=24%  Similarity=0.307  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhh----------hHHHH
Q 003487          512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK----------LERQL  581 (816)
Q Consensus       512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELK----------lerel  581 (816)
                      .++.+-+-.++.++..|-.++..+..+.++..-++..-..+.+..+.+|+.++++...+ +.+.-          +-.|+
T Consensus       161 ~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~-~~~~qq~a~~~~ql~~~~el  239 (716)
T KOG4593|consen  161 NKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEER-ADHEQQNAELEQQLSLSEEL  239 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhHH
Confidence            34444455566677777777777777777777777777777777777777766665532 22211          11122


Q ss_pred             hhh-------HHHHHHHHHHhhhHHHhhh---hhHHHHHHHHHHHHHHHHHHHh
Q 003487          582 ENS-------QSEISSYKKKISSLEKERQ---DFQSTIEALQEEKKMMQSKLRK  625 (816)
Q Consensus       582 e~l-------~~E~~s~~rqlsslekeR~---~lqsti~ALQEEKklLqskLRk  625 (816)
                      +.+       ..|....+++++...-+-.   +.+.++.-||||.+.||++|+.
T Consensus       240 e~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~  293 (716)
T KOG4593|consen  240 EAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR  293 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            221       1222333333333322222   3455788899999999999985

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins

Probab=92.04  E-value=16  Score=37.46  Aligned_cols=130  Identities=15%  Similarity=0.184  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 003487          478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  546 (816)
Q Consensus       478 aLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v-----------~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~  546 (816)
                      .|..++..-..-++.+|.-+..|.++.+.....+           ..+...|+.++...+.+...|.-.+.-|.++-.+.
T Consensus        57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~  136 (239)
T cd07647          57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK  136 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555666666666655555543333           34456666666666666777777777777765555


Q ss_pred             hhHHHH---HHHH--HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487          547 NAADER---AKIL--ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  613 (816)
Q Consensus       547 ~aA~ER---ak~L--AaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ  613 (816)
                      ..|...   ++..  ..|+--|+.|+.+.+..--+.+.+.......+..++.+-.      .++..+.+.+|
T Consensus       137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~------~~~~~~~~~~Q  202 (239)
T cd07647         137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWE------SEHATACQVFQ  202 (239)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence            554322   2221  2355556666665555555444444443333333332222      34556677777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=91.77  E-value=5.7  Score=49.21  Aligned_cols=228  Identities=26%  Similarity=0.295  Sum_probs=116.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHhhhhhhHH---------------------HHHHHHHHHHH
Q 003487          506 QQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECNAAD---------------------ERAKILASEVI  561 (816)
Q Consensus       506 qQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l---~aErdaArle~~aA~---------------------ERak~LAaEVV  561 (816)
                      +-...+..|+-++++|++|+.--+-.--.+   +.|.|+.+..+..++                     |=-++|-+|--
T Consensus       202 ~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleeke  281 (1195)
T KOG4643|consen  202 RLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKE  281 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence            334556666666666666665444333333   333444444444333                     22233333344


Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccCCC-CCcc
Q 003487          562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFG-KTAA  640 (816)
Q Consensus       562 ~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~~gk~~~~~-kns~  640 (816)
                      -|||++..+|-.-     +-..+..+|-.|++|+--++-+|.-.|.-++.|++|-.-||..=+++-++=....+. .+. 
T Consensus       282 MLeeQLq~lrars-----e~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~-  355 (1195)
T KOG4643|consen  282 MLEEQLQKLRARS-----EGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENE-  355 (1195)
T ss_pred             HHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcch-
Confidence            4444444333221     112355667888999999999999999999999999988887776655543333221 111 


Q ss_pred             ccccccc--ccccccccCccc--cCCCCCCccCCCCCcCCCCCCCCCCcccccccccccccc------------hhhHHH
Q 003487          641 STVNAST--STEDLAITDTTL--DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNI------------PHDQMR  704 (816)
Q Consensus       641 ~~kDAST--STdDLai~dd~~--~sSn~etlds~s~~s~~~s~~pllpe~G~~~l~g~~vsI------------p~DQlR  704 (816)
                      +....|.  --++|-. |.+.  ..-|..- +-+-.+-. .           ..+++..+.+            -+.+  
T Consensus       356 E~en~Sl~~e~eqLts-~ralkllLEnrrl-t~tleelq-s-----------ss~Ee~~SK~leleke~KnLs~k~e~--  419 (1195)
T KOG4643|consen  356 ELENESLQVENEQLTS-DRALKLLLENRRL-TGTLEELQ-S-----------SSYEELISKHLELEKEHKNLSKKHEI--  419 (1195)
T ss_pred             hhhhhhHHHHHHHhhh-HHHHHHHHHhHHH-HHHHHHHh-h-----------hhHHHHHHHHHHHHHHhHhHhHHHHH--
Confidence            0011111  1111100 0000  0000000 00000000 0           1122222211            1222  


Q ss_pred             HHhhHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHH
Q 003487          705 MIHNINALIS----------ELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRL  755 (816)
Q Consensus       705 mI~NInaLis----------ELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRL  755 (816)
                      |=++|+.|+-          -|-.|++.|....+.-...+++-+.+|-++.+.|..+-|+.
T Consensus       420 Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~  480 (1195)
T KOG4643|consen  420 LEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLE  480 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Confidence            2355665543          33467888888888888888888888899999998888875

>PRK11281 hypothetical protein; Provisional

Probab=91.66  E-value=47  Score=42.04  Aligned_cols=47  Identities=13%  Similarity=0.167  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 003487          512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS  558 (816)
Q Consensus       512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAa  558 (816)
                      .++..++++.|+++...-..+......-.+||..-.+|..|.+.+-.
T Consensus       131 ~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~  177 (1113)
T PRK11281        131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN  177 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444333333444444444455555555555554443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.60  E-value=14  Score=45.04  Aligned_cols=145  Identities=26%  Similarity=0.261  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCcccccccccccccccccCccccCCC
Q 003487          584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSN  663 (816)
Q Consensus       584 l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~~gk~~~~~kns~~~kDASTSTdDLai~dd~~~sSn  663 (816)
                      .++.+-..+..|..+.|-|.-+.++|+.||-+-|.+|.+|.++.- |+..-+   -..+.--+..++             
T Consensus       463 vr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~-Ekq~l~---~qlkq~q~a~~~-------------  525 (1118)
T KOG1029|consen  463 VRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP-EKQELN---HQLKQKQSAHKE-------------  525 (1118)
T ss_pred             heeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHH---HHHHHhhhhccC-------------
Confidence            344445556677888888999999999999999999999986532 221100   000000011111             


Q ss_pred             CCCccCCCCCcCCCCCCCCCCcccc-cccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-h
Q 003487          664 QDTHDDASLPRIDASGSTLLPESGR-LALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDL-N  741 (816)
Q Consensus       664 ~etlds~s~~s~~~s~~pllpe~G~-~~l~g~~vsIp~DQlRmI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~l-N  741 (816)
                                           .+++ +.|..   ..-+-+ -|+.-|.+-+-||+.|.+.=++-+-+-..++.+||+. |
T Consensus       526 ---------------------~~~~~s~L~a---a~~~ke-~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~  580 (1118)
T KOG1029|consen  526 ---------------------TTQRKSELEA---ARRKKE-LIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN  580 (1118)
T ss_pred             ---------------------cchHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                                 1111 11110   011111 2567788888899988888887777777777777653 2


Q ss_pred             -----------HHHHHHHHHhhhHHHHHHHHHhhhhcccc
Q 003487          742 -----------NELSRKLEHQTQRLELLTAQNMANENISF  770 (816)
Q Consensus       742 -----------~ELsrKLE~qTQRLELltsq~ma~e~~~a  770 (816)
                                 +|-...-|++|.+|||.--+.......++
T Consensus       581 ~q~lake~~yk~e~d~~ke~et~~lel~~~ke~e~~~asa  620 (1118)
T KOG1029|consen  581 SQQLAKEELYKNERDKLKEAETKALELIGEKEAESAPASA  620 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhc
Confidence                       23334457889999998776665444443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=91.54  E-value=23  Score=42.93  Aligned_cols=96  Identities=26%  Similarity=0.337  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHH-HHHHHHHHHHHHHh--------
Q 003487          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEM-EKLQEEIKVQLVEL--------  532 (816)
Q Consensus       465 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~---~v~qLk~dm-EqLq~Ei~aQ~~~l--------  532 (816)
                      ++..|+-|+-|+-.--..+..+|.+++.|-..|-++-..||.-.+   .-+.||.+- .+.++.+..|...|        
T Consensus       521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E  600 (961)
T KOG4673|consen  521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE  600 (961)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667666666666777777777777777777776666555   223343211 11111111111111        


Q ss_pred             -------hhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 003487          533 -------ESFRNEYANVRLECNAADERAKILASEV  560 (816)
Q Consensus       533 -------e~l~aErdaArle~~aA~ERak~LAaEV  560 (816)
                             .-|+.|..-.+.+..+|.-|+..|.-+|
T Consensus       601 q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v  635 (961)
T KOG4673|consen  601 QQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV  635 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                   2345666666666667766666655544

>PRK01156 chromosome segregation protein; Provisional

Probab=91.54  E-value=31  Score=41.16  Aligned_cols=70  Identities=10%  Similarity=0.164  Sum_probs=34.7

Q ss_pred             HHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH----------HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 003487          528 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEE----------KALRLRSNELKLERQLENSQSEISSYKKKISS  597 (816)
Q Consensus       528 Q~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE----------k~l~LRS~ELKlerele~l~~E~~s~~rqlss  597 (816)
                      ....++....++...+..+....++...+..++-.|+.          ++.+++..--+++.+++.+..++..++.++..
T Consensus       627 ~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~  706 (895)
T PRK01156        627 EANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEI  706 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345555666666666666666666555555554443          33444444344444444444444444443333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=91.48  E-value=3.6  Score=42.94  Aligned_cols=99  Identities=26%  Similarity=0.321  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 003487          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  589 (816)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~  589 (816)
                      .|.++++++++.++++..+.-...-|..++.       -|.+-+..|..+...+|+-..+|+..--+.+++-+.|..++.
T Consensus        13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k-------~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~   85 (246)
T PF00769_consen   13 RLRQMEEEMRRAQEALEESEETAEELEEKLK-------QAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR   85 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555554444333333333333       344455667777777777777777666655555555555555


Q ss_pred             HHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487          590 SYKKKISSLEKERQDFQSTIEALQEE  615 (816)
Q Consensus       590 s~~rqlsslekeR~~lqsti~ALQEE  615 (816)
                      .+...+..+..++..-......||++
T Consensus        86 e~~~~i~~l~ee~~~ke~Ea~~lq~e  111 (246)
T PF00769_consen   86 EAEAEIARLEEESERKEEEAEELQEE  111 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555554444444333344444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=91.20  E-value=36  Score=41.19  Aligned_cols=19  Identities=16%  Similarity=0.372  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 003487          510 VVNQLKSEMEKLQEEIKVQ  528 (816)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ  528 (816)
                      .+++++..+.+++..+...
T Consensus       601 ~~~~l~~~~~~l~~~~~~~  619 (908)
T COG0419         601 KLKELEERLSQLEELLQSL  619 (908)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3334444444444444444

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=91.19  E-value=11  Score=40.40  Aligned_cols=63  Identities=14%  Similarity=0.214  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh--hhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487          509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLR  571 (816)
Q Consensus       509 ~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl--e~~aA~ERak~LAaEVV~LEEk~l~LR  571 (816)
                      ..+.-++++++++++++..-..+|..|+.+..-.-.  ......+-...|-.+.+.+|.++..+|
T Consensus       170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~  234 (362)
T TIGR01010       170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLR  234 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666666666666666555433211  112233334444444455554444443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=91.11  E-value=27  Score=42.13  Aligned_cols=147  Identities=20%  Similarity=0.200  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003487          461 DFAALEQHIEDLTQEKFALQR--SLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  528 (816)
Q Consensus       461 ~faaLqqhIeDLT~EKfaLqR--~L~~s~~----------l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ  528 (816)
                      +.-.|-|++.+++++..+=.|  ++.-...          --+.+-..+.+|-..-=--|+.....++..-+|-+|+.-.
T Consensus       401 E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ek  480 (698)
T KOG0978|consen  401 ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREK  480 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777777776655544  2222222          1112222333333333345667777788888888887777


Q ss_pred             HHHhhhhHHHHHHHhhhhhhHHHHHHH--------------HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHH
Q 003487          529 LVELESFRNEYANVRLECNAADERAKI--------------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  594 (816)
Q Consensus       529 ~~~le~l~aErdaArle~~aA~ERak~--------------LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rq  594 (816)
                      .-..=.++.|++.+.+......+-=..              +-..|..|||+...+-+++=++.+++.-+..-++.+++.
T Consensus       481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~  560 (698)
T KOG0978|consen  481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK  560 (698)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence            777777788888887777665543322              233445566666655555555555554444444444444


Q ss_pred             hhhHHHhhhhhHH
Q 003487          595 ISSLEKERQDFQS  607 (816)
Q Consensus       595 lsslekeR~~lqs  607 (816)
                      +--+.+...+|+.
T Consensus       561 ~~e~~~~~~~Lq~  573 (698)
T KOG0978|consen  561 AQEAKQSLEDLQI  573 (698)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

>PLN03188 kinesin-12 family protein; Provisional

Probab=91.02  E-value=4  Score=51.40  Aligned_cols=68  Identities=22%  Similarity=0.289  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH-HH
Q 003487          476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER-AK  554 (816)
Q Consensus       476 KfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ER-ak  554 (816)
                      |-+||||++.--++.|+-|+    |-++||+.-..-....+=+....                ++||+....-|-.| ++
T Consensus      1099 ~~a~q~am~ghar~~e~ya~----l~ek~~~ll~~hr~i~egi~dvk----------------kaaakag~kg~~~~f~~ 1158 (1320)
T PLN03188       1099 KEAMQMAMEGHARMLEQYAD----LEEKHIQLLARHRRIQEGIDDVK----------------KAAARAGVRGAESKFIN 1158 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHhccccchHHHHH
Confidence            35777777777777777774    66677765544333333332111                23444444333333 78


Q ss_pred             HHHHHHHhH
Q 003487          555 ILASEVIGL  563 (816)
Q Consensus       555 ~LAaEVV~L  563 (816)
                      +||||+-.|
T Consensus      1159 alaae~s~l 1167 (1320)
T PLN03188       1159 ALAAEISAL 1167 (1320)
T ss_pred             HHHHHHHHH
Confidence            899998544

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.00  E-value=14  Score=34.93  Aligned_cols=32  Identities=31%  Similarity=0.555  Sum_probs=23.6

Q ss_pred             HhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487          594 KISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (816)
Q Consensus       594 qlsslekeR~~lqsti~ALQEEKklLqskLRk  625 (816)
                      +-..++++..++..-++.|.+.=++|+..|..
T Consensus        99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33445566667777888888999999998864

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.60  E-value=19  Score=42.23  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=10.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Q 003487          605 FQSTIEALQEEKKMMQSKLRKA  626 (816)
Q Consensus       605 lqsti~ALQEEKklLqskLRka  626 (816)
                      |+..+++.++--..|..|+.++
T Consensus       381 L~Re~~~~~~~Y~~ll~r~~e~  402 (754)
T TIGR01005       381 LQRDAAAKRQLYESYLTNYRQA  402 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444445555566543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.56  E-value=9.6  Score=39.85  Aligned_cols=50  Identities=26%  Similarity=0.393  Sum_probs=24.7

Q ss_pred             HHHhhHHHHHHHHHH----HHHHHHHHHHHHHHH--hHHHHHhhHHHHHHHHHhhhHHH
Q 003487          704 RMIHNINALISELAL----EKEELVQALSSELAQ--SSKLKDLNNELSRKLEHQTQRLE  756 (816)
Q Consensus       704 RmI~NInaLisELa~----Ereel~~AL~~es~~--~s~Lk~lN~ELsrKLE~qTQRLE  756 (816)
                      +|=+-+.+|-+||+.    +|...+..|+.+--+  .++.+.|..   -|.+.+.||+.
T Consensus       186 ~lq~QL~~L~~EL~~~kde~k~T~~D~~h~en~~~g~~ky~tl~~---i~~g~tk~ri~  241 (246)
T PF00769_consen  186 RLQEQLKELKSELEQLKDEEKQTQLDIIHAENVRAGRDKYKTLRQ---IRQGNTKQRID  241 (246)
T ss_dssp             HHHHHHHHHHHHHHTTB-CCG--HHHHHHHHHHHTT--HHHHHHH---HT-S-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHhchhHHHHHHH---HhcCCHHHHHH
Confidence            444455666777765    457777777777433  234444432   34455666653

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.55  E-value=26  Score=43.84  Aligned_cols=153  Identities=18%  Similarity=0.224  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 003487          481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV  560 (816)
Q Consensus       481 R~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV  560 (816)
                      |.|--.+.-.+.|-..-.+....-++-.+++....++|+++..+|..-...|..++.|-.-+..+.+.+...--.|--++
T Consensus       230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~  309 (1200)
T KOG0964|consen  230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI  309 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            44555555556666666666666666677777777778877777777777778888877777777777776666666677


Q ss_pred             HhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh-hcCCCCcc
Q 003487          561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKSI  633 (816)
Q Consensus       561 V~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk-a~~~gk~~  633 (816)
                      -.|-+++..-+-+.-.....++.+.++|..-+..++.++..+.+|+..=+.+..--+.|+.+.+- ++-+|+..
T Consensus       310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~s  383 (1200)
T KOG0964|consen  310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYS  383 (1200)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            77777776555555555667888888999999999999999988888777777767777777776 45566653

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.44  E-value=1.8  Score=39.34  Aligned_cols=67  Identities=18%  Similarity=0.287  Sum_probs=49.9

Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487          562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (816)
Q Consensus       562 ~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~  628 (816)
                      .||+||.+.=-.--=|+-|+++++.+-..+...+..+..-|..|....+.|++|...-|.|||.+.+
T Consensus         8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG   74 (79)
T PRK15422          8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4777776553333335566667766666677777777777888999999999999999999996554

>PRK11519 tyrosine kinase; Provisional

Probab=90.36  E-value=11  Score=44.48  Aligned_cols=9  Identities=11%  Similarity=0.150  Sum_probs=3.8

Q ss_pred             HHHHHHHHh
Q 003487          617 KMMQSKLRK  625 (816)
Q Consensus       617 klLqskLRk  625 (816)
                      ..|.+|+.+
T Consensus       387 ~~lL~r~~e  395 (719)
T PRK11519        387 MQLLNKQQE  395 (719)
T ss_pred             HHHHHHHHH
Confidence            334444443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.26  E-value=8.9  Score=36.80  Aligned_cols=63  Identities=25%  Similarity=0.300  Sum_probs=45.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH---HHHHHHHHhHHHHHH
Q 003487          506 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA---KILASEVIGLEEKAL  568 (816)
Q Consensus       506 qQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa---k~LAaEVV~LEEk~l  568 (816)
                      -....|+.|+..+.+++-|+.+-...++.+..+|+.++.+....+++.   +....++-.|+.++.
T Consensus        13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~   78 (120)
T PF12325_consen   13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELE   78 (120)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688999999999999999999999999999998776666555544   333444444444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

Probab=90.24  E-value=22  Score=37.15  Aligned_cols=116  Identities=21%  Similarity=0.224  Sum_probs=75.6

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHH-----HHHHh
Q 003487          488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA-----SEVIG  562 (816)
Q Consensus       488 ~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA-----aEVV~  562 (816)
                      .|++.|-.+-..|..=.+.|......+...|+++|.-...+...|+.-+..|.++-.+...|......+-     .|+--
T Consensus        78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK  157 (242)
T cd07671          78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEK  157 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence            4666676666667777788888999999999999999999999999999888887777666643321111     33334


Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh----hhHHHHHHHH
Q 003487          563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQ  613 (816)
Q Consensus       563 LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~----~lqsti~ALQ  613 (816)
                      ++.|+.+.+.+--+.          ...|+.-|..+.+-|.    ++..+.+.+|
T Consensus       158 ~~~K~~k~~~~~~~a----------~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q  202 (242)
T cd07671         158 SQNKAKQCRDAATEA----------ERVYKQNIEQLDKARTEWETEHILTCEVFQ  202 (242)
T ss_pred             HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444333333333          3455555555555443    4556777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.21  E-value=31  Score=43.82  Aligned_cols=100  Identities=19%  Similarity=0.193  Sum_probs=45.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh----hh
Q 003487          499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS----NE  574 (816)
Q Consensus       499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS----~E  574 (816)
                      .+...|++-...=-..++.++++.+.|.--...++..+.++..+...-..+..--..+-.|+-.|++...+++.    .-
T Consensus       388 ~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~  467 (1293)
T KOG0996|consen  388 SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL  467 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555544444445555555554444444444444444444444444444444444555555544443322    11


Q ss_pred             hhhHHHHhhhHHHHHHHHHHhhhH
Q 003487          575 LKLERQLENSQSEISSYKKKISSL  598 (816)
Q Consensus       575 LKlerele~l~~E~~s~~rqlssl  598 (816)
                      .+++++-++++.|+...++.+.-+
T Consensus       468 ~~l~~~t~~~~~e~~~~ekel~~~  491 (1293)
T KOG0996|consen  468 DSLKQETEGIREEIEKLEKELMPL  491 (1293)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHH
Confidence            223333344444444444444433

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=90.12  E-value=37  Score=42.00  Aligned_cols=61  Identities=18%  Similarity=0.155  Sum_probs=45.2

Q ss_pred             ccchhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHhhh
Q 003487          696 VNIPHDQMRMIHNINALISELALE------KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN  765 (816)
Q Consensus       696 vsIp~DQlRmI~NInaLisELa~E------reel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~ma~  765 (816)
                      ---.+.+-.||+-|.+|+..++..      -+.|-.++.-+..+|..|++         |.|.-+|++--+.+.+-
T Consensus       455 rraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkE---------eiQethldyR~els~lA  521 (1265)
T KOG0976|consen  455 RRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKE---------EIQETHLDYRSELSELA  521 (1265)
T ss_pred             hhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence            345688999999999999988754      46677777777888888876         45666777766665544

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=90.09  E-value=9.6  Score=38.05  Aligned_cols=32  Identities=38%  Similarity=0.614  Sum_probs=27.8

Q ss_pred             hHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487          597 SLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (816)
Q Consensus       597 slekeR~~lqsti~ALQEEKklLqskLRka~~  628 (816)
                      ..+.++++|+.-|+.||+|-|.|+.++++.+.
T Consensus        86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~  117 (158)
T PF09744_consen   86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSD  117 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            66788999999999999999999999986554

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.01  E-value=53  Score=39.84  Aligned_cols=39  Identities=23%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487          587 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (816)
Q Consensus       587 E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk  625 (816)
                      ....+...+..+.+++..+...++.+.++.+.++..+..
T Consensus       404 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~  442 (908)
T COG0419         404 ALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ  442 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555555555555555553

>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

Probab=89.88  E-value=28  Score=36.38  Aligned_cols=130  Identities=18%  Similarity=0.239  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003487          478 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN  537 (816)
Q Consensus       478 aLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~--------------------~v~qLk~dmEqLq~Ei~aQ~~~le~l~a  537 (816)
                      .|..++..-..=++.+|..+..|.++...+-.                    ....+...++.+|..+..+...|+..+.
T Consensus        61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk  140 (258)
T cd07655          61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK  140 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45555555555666666666666666555422                    2334445555666666666677777777


Q ss_pred             HHHHHhhhhhhHHHHHHHH-------HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh----hhH
Q 003487          538 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQ  606 (816)
Q Consensus       538 ErdaArle~~aA~ERak~L-------AaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~----~lq  606 (816)
                      -|..+=.+...|.......       ..|+--++.|+.+....--+.+          ..|+.+|..+.+.+.    +|-
T Consensus       141 ~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~----------~~Y~~~l~~~n~~~~~y~~~m~  210 (258)
T cd07655         141 AYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTK----------DKYEKALEDLNKYNPRYMEDME  210 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhHHHHHHHH
Confidence            7777655555555544322       2455555555544433333333          445555555554443    466


Q ss_pred             HHHHHHH--HHHH
Q 003487          607 STIEALQ--EEKK  617 (816)
Q Consensus       607 sti~ALQ--EEKk  617 (816)
                      .+++.||  ||.+
T Consensus       211 ~~~~~~Q~lEe~R  223 (258)
T cd07655         211 QVFDKCQEFEEKR  223 (258)
T ss_pred             HHHHHHHHHHHHH
Confidence            7888888  5553

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=89.86  E-value=36  Score=37.68  Aligned_cols=119  Identities=24%  Similarity=0.373  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh------h--hhhHHHHHHHHHHHHHhHHHHHHHH-------h
Q 003487          507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL------E--CNAADERAKILASEVIGLEEKALRL-------R  571 (816)
Q Consensus       507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl------e--~~aA~ERak~LAaEVV~LEEk~l~L-------R  571 (816)
                      |-..|+.|+..+.+|+.+..+....|+.|+.|------      +  .|--.-|.-.|++|=-.|++++-+-       |
T Consensus       133 qE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~  212 (310)
T PF09755_consen  133 QEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPR  212 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcc
Confidence            34445566666666666555555555555443221000      0  1222334555555555555555430       0


Q ss_pred             ---------hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh----HHHHHHHHHHHHHHHHHHHh
Q 003487          572 ---------SNELKLERQLENSQSEISSYKKKISSLEKERQDF----QSTIEALQEEKKMMQSKLRK  625 (816)
Q Consensus       572 ---------S~ELKlerele~l~~E~~s~~rqlsslekeR~~l----qsti~ALQEEKklLqskLRk  625 (816)
                               ..-=++...+..|+.|+.++++++.+.+++...-    ......+++|-+.||-+|+.
T Consensus       213 d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~  279 (310)
T PF09755_consen  213 DTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQR  279 (310)
T ss_pred             hHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0012344555578888888888888776665432    22235566777888888873

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=89.84  E-value=14  Score=38.22  Aligned_cols=26  Identities=19%  Similarity=0.096  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHH----hhcCCCCccCC
Q 003487          610 EALQEEKKMMQSKLR----KASGSGKSIDF  635 (816)
Q Consensus       610 ~ALQEEKklLqskLR----ka~~~gk~~~~  635 (816)
                      ..++.+-+.++.+|.    +++..|.....
T Consensus       189 ~~~~~~l~~a~~~l~~~~I~AP~~G~V~~~  218 (334)
T TIGR00998       189 QEAKERLKTAWLALKRTVIRAPFDGYVARR  218 (334)
T ss_pred             HHHHHHHHHHHHHhhCcEEEcCCCcEEEEE
Confidence            333444444444454    46777775433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=89.68  E-value=0.1  Score=60.64  Aligned_cols=17  Identities=29%  Similarity=0.692  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHhhcCCCC
Q 003487          791 VVERVLGWIMKLFPGGP  807 (816)
Q Consensus       791 VveRvlgwimklfpgg~  807 (816)
                      ||--+|||-..+.|.|.
T Consensus       639 av~~llGyki~~~~~~~  655 (722)
T PF05557_consen  639 AVYSLLGYKIDFMPNGR  655 (722)
T ss_dssp             HHHHHHSEEEEEETTTE
T ss_pred             HHHHHhcceeeecCCCe
Confidence            45555666555555543

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=89.62  E-value=13  Score=32.07  Aligned_cols=56  Identities=14%  Similarity=0.275  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487          551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  613 (816)
Q Consensus       551 ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ  613 (816)
                      .....+..-+..|+..+.+.       +.+++.+..++..++..+..+..++.-+..+.+.-+
T Consensus        45 ~~~~~~~~~~~~l~~~i~~~-------~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~  100 (123)
T PF02050_consen   45 AQLRNYQRYISALEQAIQQQ-------QQELERLEQEVEQAREELQEARRERKKLEKLKERRR  100 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555544       444445555555555555555555555555544433

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=89.60  E-value=29  Score=36.21  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=12.2

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHH
Q 003487          705 MIHNINALISELALEKEELVQAL  727 (816)
Q Consensus       705 mI~NInaLisELa~Ereel~~AL  727 (816)
                      .|.-+..+.-||-.|+.+|-.-|
T Consensus       166 ~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  166 TIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555655555554443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=89.59  E-value=64  Score=40.18  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=14.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHH
Q 003487          706 IHNINALISELALEKEELVQALSSE  730 (816)
Q Consensus       706 I~NInaLisELa~Ereel~~AL~~e  730 (816)
                      -|+|++|.-.+..+--..+-.|.++
T Consensus       684 ~d~v~~l~k~~~~~a~~~~~~l~~~  708 (980)
T KOG0980|consen  684 SDRVNDLCKKCGREALAFLVSLSSE  708 (980)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3566666666665555555555544

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=89.49  E-value=23  Score=34.99  Aligned_cols=79  Identities=25%  Similarity=0.347  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 003487          511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  589 (816)
Q Consensus       511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~  589 (816)
                      ..-|++.++-|++++..-.-.++.+-.+-.+++.+|..-.+.-..++.+.-.|+..+-.+|+.--.+.++++..+..|+
T Consensus        19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~   97 (140)
T PF10473_consen   19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVS   97 (140)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555555555555666666555555666666666666666666555555555444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=89.49  E-value=35  Score=37.10  Aligned_cols=34  Identities=12%  Similarity=0.225  Sum_probs=24.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487          508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (816)
Q Consensus       508 ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda  541 (816)
                      .....-|.++++++++++.....++..|+.+..-
T Consensus       170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i  203 (444)
T TIGR03017       170 QKAALWFVQQIAALREDLARAQSKLSAYQQEKGI  203 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3456667777777777777777777787777644

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=89.47  E-value=46  Score=38.33  Aligned_cols=119  Identities=25%  Similarity=0.285  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 003487          480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE  559 (816)
Q Consensus       480 qR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE  559 (816)
                      ...|+..+..-+....|-..|.....-....+...|.++.++++....--..+.+|..|....+.+...+.+.-...-..
T Consensus       287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~  366 (522)
T PF05701_consen  287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA  366 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence            34556666666666666666776666677777777777777777666666667777777777776665544333322223


Q ss_pred             HHhHHHHHHHHhh-------hhhhhHHHHhhhHHHHHHHHHHhhhH
Q 003487          560 VIGLEEKALRLRS-------NELKLERQLENSQSEISSYKKKISSL  598 (816)
Q Consensus       560 VV~LEEk~l~LRS-------~ELKlerele~l~~E~~s~~rqlssl  598 (816)
                      +..|-..+.++.+       ..-..+.++..++.+++.++..+..+
T Consensus       367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~  412 (522)
T PF05701_consen  367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTA  412 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444433       33333444444444444444444433

Several sequences in this family are described as being myosin heavy chain-like.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.12  E-value=10  Score=39.06  Aligned_cols=62  Identities=19%  Similarity=0.264  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487          480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (816)
Q Consensus       480 qR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda  541 (816)
                      .+.=.++++-.+.+++|-..|.+.|-+...++..|+...++|+..+..|..+++.+..+.+.
T Consensus        34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~   95 (251)
T PF11932_consen   34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ   95 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445667777888888888888888888888888888888888888888877777665554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.03  E-value=22  Score=36.62  Aligned_cols=62  Identities=19%  Similarity=0.255  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003487          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  524 (816)
Q Consensus       463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E  524 (816)
                      +..|+-|+++..||-.|+..+.+-.+=.+.|-..|..+.+....|...+.+|+.+++.++..
T Consensus        38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~   99 (251)
T PF11932_consen   38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET   99 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778899999999999999999999899999999999888888888888888888766653

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=88.97  E-value=35  Score=40.50  Aligned_cols=94  Identities=23%  Similarity=0.314  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003487          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  542 (816)
Q Consensus       463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA  542 (816)
                      -.|+.-|+.|-.|+-.|..-|+.+.+       +|+.|..-..+|...+.+|.+.+++++.+..-+..-|+.+..++..+
T Consensus        83 ~~Lq~E~~~L~kElE~L~~qlqaqv~-------~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~  155 (617)
T PF15070_consen   83 QQLQAEAEHLRKELESLEEQLQAQVE-------NNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATA  155 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence            46777777777777777766665544       45555555567888888888888888888776666677776666542


Q ss_pred             hhhhhhHHHHHHHHHHHHHhHHHHH
Q 003487          543 RLECNAADERAKILASEVIGLEEKA  567 (816)
Q Consensus       543 rle~~aA~ERak~LAaEVV~LEEk~  567 (816)
                          -.|-..-+.|=..+..|+++.
T Consensus       156 ----SRAlsQN~eLK~QL~Elq~~F  176 (617)
T PF15070_consen  156 ----SRALSQNRELKEQLAELQDAF  176 (617)
T ss_pred             ----HHHHHhHHHHHHHHHHHHHHH
Confidence                223334445555555555533

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=88.79  E-value=50  Score=37.90  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 003487          462 FAALEQHIEDLTQEKFALQRSLEA  485 (816)
Q Consensus       462 faaLqqhIeDLT~EKfaLqR~L~~  485 (816)
                      ++.+++-|.+--++.-.|+..|..
T Consensus        47 i~~~~~~i~~~~~~~~kL~~~lk~   70 (420)
T COG4942          47 IAALEKKIREQQDQRAKLEKQLKS   70 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=88.74  E-value=43  Score=38.22  Aligned_cols=29  Identities=34%  Similarity=0.578  Sum_probs=19.8

Q ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 003487          460 EDFAALEQHIEDLTQ-EKFALQRSLEASRA  488 (816)
Q Consensus       460 ~~faaLqqhIeDLT~-EKfaLqR~L~~s~~  488 (816)
                      .++..|++-|.+|+. ++-.++++|+.+.+
T Consensus       258 ~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~  287 (582)
T PF09731_consen  258 ERIDALQKELAELKEEEEEELERALEEQRE  287 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677776666665 55577888887764

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=88.56  E-value=10  Score=43.41  Aligned_cols=18  Identities=22%  Similarity=0.244  Sum_probs=9.1

Q ss_pred             HHHHHhhhHHHHHHHHhh
Q 003487          491 ESLAAENSSLTDSYNQQR  508 (816)
Q Consensus       491 EsLA~ENsaLTd~yNqQ~  508 (816)
                      |-|++-|.+|.+.|-+|-
T Consensus        13 qr~~~~~~~laq~~k~~s   30 (459)
T KOG0288|consen   13 QRLIDLNTELAQCEKAQS   30 (459)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            445555555555554443

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=88.56  E-value=9.8  Score=45.98  Aligned_cols=41  Identities=27%  Similarity=0.247  Sum_probs=22.5

Q ss_pred             cCCCCCCCCCCcccccccccccc-cchhhHHHHHhhHHHHHHHHHHHH
Q 003487          674 RIDASGSTLLPESGRLALEGLAV-NIPHDQMRMIHNINALISELALEK  720 (816)
Q Consensus       674 s~~~s~~pllpe~G~~~l~g~~v-sIp~DQlRmI~NInaLisELa~Er  720 (816)
                      +.--+..+++++.|..  +--+. .|+ +|   ++-||+=|-++.+|+
T Consensus       346 ~~~hs~~dl~~psG~~--a~~lAmmlq-~~---ldain~eirliqeEk  387 (916)
T KOG0249|consen  346 ETLHSSADLLSPSGAS--AQTLAMMLQ-EQ---LDAINKEIRLIQEEK  387 (916)
T ss_pred             hhhhccccccCcchhh--hhhhhhhcc-cC---CCcccchhhHhHhhh
Confidence            3344555777777775  11111 222 22   356777777777777

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=88.45  E-value=23  Score=40.80  Aligned_cols=143  Identities=22%  Similarity=0.222  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 003487          474 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  553 (816)
Q Consensus       474 ~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa  553 (816)
                      +++..+-|-+..-++=|++|-+.--+.-|+--.....+-+|.-..-+|++.++.|.+--+..-+|+..-.-+.-.-.||-
T Consensus       215 e~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eRe  294 (502)
T KOG0982|consen  215 EERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKERE  294 (502)
T ss_pred             chhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444445555443222222223333344444444445555555555555555566666666677777887


Q ss_pred             HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH-------HHHHHHHHHHHh
Q 003487          554 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ-------EEKKMMQSKLRK  625 (816)
Q Consensus       554 k~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ-------EEKklLqskLRk  625 (816)
                      +.|-.|  .|+-|+.+|       +.+...++..+-+++....-++-++|.+-..|++|.       ++++..-.+||+
T Consensus       295 asle~E--nlqmr~qql-------eeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr  364 (502)
T KOG0982|consen  295 ASLEKE--NLQMRDQQL-------EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR  364 (502)
T ss_pred             HHHHHH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766444  344444433       555666777777777777777788877777777765       455555566664

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=88.45  E-value=75  Score=39.50  Aligned_cols=14  Identities=29%  Similarity=0.541  Sum_probs=7.1

Q ss_pred             hHHHHHHHHHHHHH
Q 003487          461 DFAALEQHIEDLTQ  474 (816)
Q Consensus       461 ~faaLqqhIeDLT~  474 (816)
                      ++..+++.++++..
T Consensus       531 ~l~~~~~~~~~~~~  544 (1047)
T PRK10246        531 RLDALEKEVKKLGE  544 (1047)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555554433

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=88.22  E-value=40  Score=36.94  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=18.9

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHH-----hhcCCCCc
Q 003487          600 KERQDFQSTIEALQEEKKMMQSKLR-----KASGSGKS  632 (816)
Q Consensus       600 keR~~lqsti~ALQEEKklLqskLR-----ka~~~gk~  632 (816)
                      .+...++.-+..++.+...++..|.     +++-.|.+
T Consensus       227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V  264 (421)
T TIGR03794       227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRV  264 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEE
Confidence            3445555666666666666666663     24555554

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=88.14  E-value=47  Score=36.78  Aligned_cols=150  Identities=21%  Similarity=0.365  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003487          463 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE  531 (816)
Q Consensus       463 aaLqqhIeDLT~EKfaLqR~L~~s~~-----------l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~  531 (816)
                      ||++.|=+-.|.+ --|.++++++++           =+-.|-+.|+-|+.....--+.++-|+-++-..+.-+.---++
T Consensus       102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~  180 (305)
T PF14915_consen  102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA  180 (305)
T ss_pred             HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444443 346666666665           3446778888999888888888899999998888888888889


Q ss_pred             hhhhHHHHHHHhhhhhhH-----HHHHH--HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 003487          532 LESFRNEYANVRLECNAA-----DERAK--ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  604 (816)
Q Consensus       532 le~l~aErdaArle~~aA-----~ERak--~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~  604 (816)
                      |+.+..+..-++....+.     .|+++  ..-.-=-.||||+-++-|.-+=|+.||+.++.+...-++-|--+.   ..
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ---~~  257 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ---DQ  257 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HH
Confidence            998876666655443332     23332  233344578999999999999999999999988877777776552   34


Q ss_pred             hHHHHHHHHHHH
Q 003487          605 FQSTIEALQEEK  616 (816)
Q Consensus       605 lqsti~ALQEEK  616 (816)
                      ++.+|..||-|.
T Consensus       258 f~d~~~~L~ae~  269 (305)
T PF14915_consen  258 FQDIVKKLQAES  269 (305)
T ss_pred             HHHHHHHHHHHH
Confidence            566777777433

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=88.07  E-value=32  Score=34.85  Aligned_cols=133  Identities=16%  Similarity=0.259  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 003487          478 ALQRSLEASRALSESLAAENSSLTDSYNQQ------------RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  545 (816)
Q Consensus       478 aLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ------------~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle  545 (816)
                      ++..+...-..-++.+|..+..+.+.++.+            ......+..++++++.++......++..+.-|..+-.+
T Consensus        62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke  141 (251)
T cd07653          62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKE  141 (251)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555666666666666666533            23344456667777777777777777777777777666


Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh-----hhHHHHHHHH
Q 003487          546 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ  613 (816)
Q Consensus       546 ~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~-----~lqsti~ALQ  613 (816)
                      ...|...-....+.-..=..++.+++...-+...+++.++   ..|...|..+.+...     .|-.+++.||
T Consensus       142 ~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~---~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q  211 (251)
T cd07653         142 AEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAK---NEYAAQLQKFNKEQRQHYSTDLPQIFDKLQ  211 (251)
T ss_pred             HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            6666543322221100000111112222222222222222   456666666655532     5667777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=88.03  E-value=0.15  Score=60.85  Aligned_cols=126  Identities=18%  Similarity=0.301  Sum_probs=0.0

Q ss_pred             HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487          492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  571 (816)
Q Consensus       492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR  571 (816)
                      .|..|.+.++-..-.+...+.+|.....+|..++......++.+..|+++++.+|...       ..||..|...+-.++
T Consensus       353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~-------~te~~~Lk~~lee~~  425 (859)
T PF01576_consen  353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREAREL-------ETELFKLKNELEELQ  425 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHhhhHHHH
Confidence            3555666666555566666666666666666666666677777788888877776554       455555555555444


Q ss_pred             hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          572 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       572 S~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                      ...-.++|+...|..||.-+..++....+..++|.-....|..|+.-|+..|.
T Consensus       426 e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~le  478 (859)
T PF01576_consen  426 EQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLE  478 (859)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556656666666666555555555555555555555555554444444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=87.97  E-value=45  Score=42.16  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 003487          551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  612 (816)
Q Consensus       551 ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~AL  612 (816)
                      .+-..|-+|...|+.++..++-.-+-..+-.+=++...+-+++++..++++-+.||..|+..
T Consensus       173 a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k  234 (1109)
T PRK10929        173 AQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ  234 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777777777665544443333333344444445566666666666666666553

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.85  E-value=5.7  Score=40.88  Aligned_cols=11  Identities=9%  Similarity=0.069  Sum_probs=4.5

Q ss_pred             hhHHHHHHHHH
Q 003487          604 DFQSTIEALQE  614 (816)
Q Consensus       604 ~lqsti~ALQE  614 (816)
                      .|...++++|+
T Consensus       157 ~l~~~~~~~~~  167 (206)
T PRK10884        157 AANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHH
Confidence            33334444443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=87.79  E-value=35  Score=34.96  Aligned_cols=118  Identities=18%  Similarity=0.262  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 003487          483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG  562 (816)
Q Consensus       483 L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~  562 (816)
                      |.-.+.-.+.|.-||-.|-.-.-.|...++...+.=..|-+-|..+.-++-.++...-.++..+.++.-+-+..-+|+..
T Consensus        21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k  100 (194)
T PF15619_consen   21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK  100 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445678889999999888888888888887788888888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHhh--------hhhhhHHHHhhhHHHHHHHHHHhhhHHH
Q 003487          563 LEEKALRLRS--------NELKLERQLENSQSEISSYKKKISSLEK  600 (816)
Q Consensus       563 LEEk~l~LRS--------~ELKlerele~l~~E~~s~~rqlsslek  600 (816)
                      +++.+..|+-        +.-+|.++|+.+..++..-++++..|++
T Consensus       101 ~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek  146 (194)
T PF15619_consen  101 TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK  146 (194)
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888754        1234556666666666666666666554

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=87.31  E-value=30  Score=44.04  Aligned_cols=29  Identities=28%  Similarity=0.243  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHhhH
Q 003487          713 ISELALEKEELVQALSSELAQSSKLKDLNN  742 (816)
Q Consensus       713 isELa~Ereel~~AL~~es~~~s~Lk~lN~  742 (816)
                      |.+=|.|+.. +-+|.-+.....++...|.
T Consensus      1013 l~kkE~EkrK-v~~L~qlr~~l~k~~l~~q 1041 (1317)
T KOG0612|consen 1013 LRKKEKEKRK-VMELSQLRTKLNKLRLKNQ 1041 (1317)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhhhhH
Confidence            4455666666 7777777777777776665

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=87.30  E-value=4  Score=41.26  Aligned_cols=70  Identities=23%  Similarity=0.395  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 003487          477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  556 (816)
Q Consensus       477 faLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L  556 (816)
                      ++++..|.......+.|..||.+|.+.-.+....+.+|+.+++.|+.+       +..+..+|..    .-..++||+.|
T Consensus        86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~-------~~~~~eDY~~----L~~Im~RARkl  154 (161)
T TIGR02894        86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR-------LSTIEEDYQT----LIDIMDRARKL  154 (161)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHH
Confidence            456667777777788899999999876666666666666665555554       5677777776    35689999998


Q ss_pred             H
Q 003487          557 A  557 (816)
Q Consensus       557 A  557 (816)
                      +
T Consensus       155 ~  155 (161)
T TIGR02894       155 A  155 (161)
T ss_pred             H
Confidence            7

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=87.29  E-value=64  Score=37.45  Aligned_cols=154  Identities=14%  Similarity=0.229  Sum_probs=95.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003487          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  537 (816)
Q Consensus       458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~a  537 (816)
                      =..++..+++.|+++..-=-.|  .|..+.+..+.+.++-+.|-+.+=.....-..++..+..+..-|....-....+..
T Consensus       250 i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~  327 (560)
T PF06160_consen  250 IEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE  327 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3455666665555543321111  45667777777777777777777666666667777777777777777778888899


Q ss_pred             HHHHHhhhhhhH---HHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487          538 EYANVRLECNAA---DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  613 (816)
Q Consensus       538 ErdaArle~~aA---~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ  613 (816)
                      |.++.++.+.=.   .++.+.|..++-.|+.+...+.-.--.-..--..+..++.....++..++++=.++...+..|+
T Consensus       328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~  406 (560)
T PF06160_consen  328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLR  406 (560)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988887543   4688888888888888877653222111111222444444444445544444444444444444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.16  E-value=4.5  Score=36.62  Aligned_cols=66  Identities=21%  Similarity=0.285  Sum_probs=46.5

Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 003487          562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  627 (816)
Q Consensus       562 ~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~  627 (816)
                      .||+|+.+.=-----|+-|+++|+.+--++...++.+..-|..|+...+.|++|-..-|.|||-+.
T Consensus         8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL   73 (79)
T COG3074           8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367777654322223455666666666666667777777788888888999999999999999543

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=87.10  E-value=74  Score=38.81  Aligned_cols=63  Identities=29%  Similarity=0.343  Sum_probs=42.1

Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       562 ~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                      -||.+|-.||.+-=--.+-++++..+-.-+++|+.+-.|-=.-+.--|+.||+|-.-++.+.-
T Consensus       591 ~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e  653 (786)
T PF05483_consen  591 ILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE  653 (786)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            455556555554333344455577777777888777767666777788888888877776554

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=87.01  E-value=48  Score=39.25  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=17.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHH
Q 003487          706 IHNINALISELALEKEELVQALSSE  730 (816)
Q Consensus       706 I~NInaLisELa~Ereel~~AL~~e  730 (816)
                      ++-|..+|.-+.-++++|-+.|.+=
T Consensus       490 t~RIlEIv~NI~KQk~eI~KIl~DT  514 (594)
T PF05667_consen  490 TRRILEIVKNIRKQKEEIEKILSDT  514 (594)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4556666666677888887777653

>TIGR02977 phageshock_pspA phage shock protein A

Probab=86.99  E-value=38  Score=34.54  Aligned_cols=15  Identities=7%  Similarity=0.127  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHHHHH
Q 003487          461 DFAALEQHIEDLTQE  475 (816)
Q Consensus       461 ~faaLqqhIeDLT~E  475 (816)
                      -..+|.|.|.||-..
T Consensus        25 P~~~l~q~irem~~~   39 (219)
T TIGR02977        25 PEKMIRLIIQEMEDT   39 (219)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            457899999888763

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=86.96  E-value=32  Score=41.18  Aligned_cols=85  Identities=15%  Similarity=0.205  Sum_probs=66.7

Q ss_pred             hhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487          544 LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  623 (816)
Q Consensus       544 le~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskL  623 (816)
                      ..|....++-+.|-.++..|+.++..++-++.++.++++....++.-.   +..|+..+..|.... +-+++.|.|+-++
T Consensus       234 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N~i  309 (670)
T KOG0239|consen  234 GLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHNEI  309 (670)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            344555666788888999999999999999999999998888665555   444555566666666 7778889999999


Q ss_pred             HhhcCCCCc
Q 003487          624 RKASGSGKS  632 (816)
Q Consensus       624 Rka~~~gk~  632 (816)
                      ..+-++-++
T Consensus       310 ~eLkGnIRV  318 (670)
T KOG0239|consen  310 LELKGNIRV  318 (670)
T ss_pred             HHhhcCceE
Confidence            999888886

>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []

Probab=86.94  E-value=44  Score=35.20  Aligned_cols=102  Identities=18%  Similarity=0.249  Sum_probs=60.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH
Q 003487          488 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE  565 (816)
Q Consensus       488 ~l~EsLA~ENsaLTd~yNqQ~~--~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE  565 (816)
                      ..+++|-..-..+++.+|.-+|  .|.+||..++.++..+++-+..+...+.+|+.|...       --..=.||-.|=.
T Consensus         9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~-------Rs~sQrEvn~LLq   81 (207)
T PF05546_consen    9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQ-------RSSSQREVNELLQ   81 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence            4556666667778888998876  567777777777776666666666666666655443       2233346655533


Q ss_pred             H-----------HHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 003487          566 K-----------ALRLRSNELKLERQLENSQSEISSYKKKIS  596 (816)
Q Consensus       566 k-----------~l~LRS~ELKlerele~l~~E~~s~~rqls  596 (816)
                      |           -..|-.++=-.+++.+.++.++..++.+++
T Consensus        82 RK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e  123 (207)
T PF05546_consen   82 RKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVE  123 (207)
T ss_pred             cccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            2           333433444455555556655555555555

The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.84  E-value=26  Score=33.39  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=30.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003487          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  524 (816)
Q Consensus       458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E  524 (816)
                      ..++...+=..|-+|       ....++-.+.-|+|.+.+-.+....=.+...+..|+.+++.++++
T Consensus        29 ~~~~~~~vin~i~~L-------l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere   88 (151)
T PF11559_consen   29 SEDNDVRVINCIYDL-------LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE   88 (151)
T ss_pred             ccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555666554       334445555555555555555444444444445555555444444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=86.80  E-value=38  Score=34.33  Aligned_cols=126  Identities=16%  Similarity=0.233  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHH----------HHHHHHHHHHHHHHHH-HHHHHHHHH-------hhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003487          460 EDFAALEQHIE----------DLTQEKFALQRSLEAS-RALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKL  521 (816)
Q Consensus       460 ~~faaLqqhIe----------DLT~EKfaLqR~L~~s-~~l~EsLA~-------ENsaLTd~yNqQ~~~v~qLk~dmEqL  521 (816)
                      |.|..|.+|++          ++=.|+-.+.+.-.+. ++|+.....       ...++..-|+.--..+..+-..-+++
T Consensus         5 d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~   84 (251)
T cd07653           5 DQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELI   84 (251)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555544          3445565555554443 233433221       12245566666665555555555555


Q ss_pred             HHHHHHHH-HHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 003487          522 QEEIKVQL-VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  588 (816)
Q Consensus       522 q~Ei~aQ~-~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~  588 (816)
                      -+.|..+. -.+..+..+....+-.+.   +=...+-.++..+..++.+.|..--++.++++.+....
T Consensus        85 a~~l~~~v~~~l~~~~~~~~~~rK~~~---~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~  149 (251)
T cd07653          85 AENLNSNVCKELKTLISELRQERKKHL---SEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKY  149 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554443 344455544444333333   33334555566666666666666666666655555443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=86.70  E-value=66  Score=39.96  Aligned_cols=10  Identities=20%  Similarity=0.218  Sum_probs=4.0

Q ss_pred             HHHHHHHHhh
Q 003487          793 ERVLGWIMKL  802 (816)
Q Consensus       793 eRvlgwimkl  802 (816)
                      +.++.+|..|
T Consensus       994 ~~~~~~l~~l 1003 (1047)
T PRK10246        994 DTALDALDAL 1003 (1047)
T ss_pred             HHHHHHHHHH
Confidence            3344444443

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=86.64  E-value=61  Score=37.68  Aligned_cols=55  Identities=16%  Similarity=0.259  Sum_probs=36.3

Q ss_pred             hHHHHhhhHHHHHHHH----HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh-cCCCC
Q 003487          577 LERQLENSQSEISSYK----KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA-SGSGK  631 (816)
Q Consensus       577 lerele~l~~E~~s~~----rqlsslekeR~~lqsti~ALQEEKklLqskLRka-~~~gk  631 (816)
                      ++.+|+..+..+....    +.-.+|..+=..|......|..|-.-|...|+-- -..|.
T Consensus       145 l~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~  204 (475)
T PRK10361        145 LREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGN  204 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc
Confidence            5666777666666544    3356677777777777777888877777777742 23444

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=86.46  E-value=45  Score=34.82  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHH----hhcCCCCc
Q 003487          607 STIEALQEEKKMMQSKLR----KASGSGKS  632 (816)
Q Consensus       607 sti~ALQEEKklLqskLR----ka~~~gk~  632 (816)
                      ..+..++..-+..+.+|.    +++..|..
T Consensus       186 ~~~~~~~~~l~~a~~~l~~~~i~AP~dG~V  215 (327)
T TIGR02971       186 AEVKSALEAVQQAEALLELTYVKAPIDGRV  215 (327)
T ss_pred             HHHHHHHHHHHHHHHHHhcCEEECCCCeEE
Confidence            344444444444444444    35555554

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=86.15  E-value=69  Score=40.46  Aligned_cols=10  Identities=50%  Similarity=0.713  Sum_probs=4.3

Q ss_pred             HHHHHHHHhh
Q 003487          743 ELSRKLEHQT  752 (816)
Q Consensus       743 ELsrKLE~qT  752 (816)
                      +|++-|+-|+
T Consensus       838 elr~a~~rq~  847 (1195)
T KOG4643|consen  838 ELRRALDRQH  847 (1195)
T ss_pred             HHHHHHHhhc
Confidence            3344444444

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=86.13  E-value=79  Score=37.30  Aligned_cols=19  Identities=11%  Similarity=0.246  Sum_probs=8.1

Q ss_pred             hhhHHHhhhhhHHHHHHHH
Q 003487          595 ISSLEKERQDFQSTIEALQ  613 (816)
Q Consensus       595 lsslekeR~~lqsti~ALQ  613 (816)
                      +..|+.|..-.+...+.|.
T Consensus       378 ~~~L~Re~~~~~~~Y~~ll  396 (754)
T TIGR01005       378 LDALQRDAAAKRQLYESYL  396 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=86.11  E-value=22  Score=34.15  Aligned_cols=87  Identities=18%  Similarity=0.266  Sum_probs=61.3

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 003487          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF  535 (816)
Q Consensus       457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ-~~~le~l  535 (816)
                      ..+...+.|+.+|++.....-.|...=+.=+....+|-++|.+++.+.|.....|.++...|+--..   +. .+...-.
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~---ak~~l~~r~~   89 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ---AKLELESRLL   89 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            4566789999999999888777766666677788888889988888888888888888777755221   11 2222334


Q ss_pred             HHHHHHHhhhh
Q 003487          536 RNEYANVRLEC  546 (816)
Q Consensus       536 ~aErdaArle~  546 (816)
                      ++|.|.|.++.
T Consensus        90 k~~~dka~lel  100 (107)
T PF09304_consen   90 KAQKDKAILEL  100 (107)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHhhhhHHHH
Confidence            66666665554

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=86.05  E-value=48  Score=34.73  Aligned_cols=105  Identities=13%  Similarity=0.172  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH-----HHHHHHH
Q 003487          487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-----ILASEVI  561 (816)
Q Consensus       487 ~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak-----~LAaEVV  561 (816)
                      ..|+++|..+-..|..=.+.|......++..++.++.....|.-.++.-+..|..+-.+...|..+..     ....|+=
T Consensus        78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~  157 (240)
T cd07672          78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQE  157 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence            34666666655545555577777788889999999998888888888887777765555444443321     1123444


Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHH
Q 003487          562 GLEEKALRLRSNELKLERQLENSQSEISSY  591 (816)
Q Consensus       562 ~LEEk~l~LRS~ELKlerele~l~~E~~s~  591 (816)
                      -|++|+.+.+.+.-|.+++.+....++..+
T Consensus       158 K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~  187 (240)
T cd07672         158 KLFAKLAQSKQNAEDADRLYMQNISVLDKI  187 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555445444444444333333

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.03  E-value=19  Score=43.21  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=10.9

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHH
Q 003487          498 SSLTDSYNQQRSVVNQLKSEMEKL  521 (816)
Q Consensus       498 saLTd~yNqQ~~~v~qLk~dmEqL  521 (816)
                      ..|...+.+|-..+.+|+++++.|
T Consensus       568 ~~Lk~~~e~Ql~~L~~l~e~~~~l  591 (717)
T PF10168_consen  568 KLLKQQKEQQLKELQELQEERKSL  591 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=85.94  E-value=38  Score=33.52  Aligned_cols=53  Identities=26%  Similarity=0.390  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 003487          508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV  560 (816)
Q Consensus       508 ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV  560 (816)
                      ..++.-|+.+++.+-.++..=...|.+++.|+++.-..|..=.+|...|.+=+
T Consensus        51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~  103 (140)
T PF10473_consen   51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN  103 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555555555555555555555555555555544444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=85.48  E-value=31  Score=39.98  Aligned_cols=19  Identities=21%  Similarity=0.333  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 003487          607 STIEALQEEKKMMQSKLRK  625 (816)
Q Consensus       607 sti~ALQEEKklLqskLRk  625 (816)
                      ..+.+++|+.--||.+||.
T Consensus       428 ~~~~s~d~~I~dLqEQlrD  446 (493)
T KOG0804|consen  428 EALGSKDEKITDLQEQLRD  446 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            3444555555566666664

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=85.25  E-value=12  Score=39.28  Aligned_cols=62  Identities=31%  Similarity=0.476  Sum_probs=48.5

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       563 LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                      |||+...+.-+--|++.+++....+.+..++++.++.|.=.+++...+.|-||--.||.++.
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            66666666666667777777777778888888888888888888888888888777777765

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=84.95  E-value=73  Score=37.27  Aligned_cols=36  Identities=31%  Similarity=0.304  Sum_probs=16.4

Q ss_pred             HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487          587 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  623 (816)
Q Consensus       587 E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskL  623 (816)
                      -+.++..++.... ..+.-+...+.|.+-.+.|...+
T Consensus       301 ll~~~~~q~~~e~-~~~~~~~~~~~l~~~~~~i~~~~  336 (650)
T TIGR03185       301 LLDSTKAQLQKEE-QSQQNQLTQEELEERDKELLESL  336 (650)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555332 23333444455544444444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=84.92  E-value=40  Score=35.49  Aligned_cols=11  Identities=18%  Similarity=0.187  Sum_probs=6.5

Q ss_pred             hhcCCCCccCC
Q 003487          625 KASGSGKSIDF  635 (816)
Q Consensus       625 ka~~~gk~~~~  635 (816)
                      +++-.|.....
T Consensus       207 ~AP~dG~V~~~  217 (331)
T PRK03598        207 IAPSDGTILTR  217 (331)
T ss_pred             ECCCCeEEEec
Confidence            46777776433

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.77  E-value=9.4  Score=39.38  Aligned_cols=77  Identities=18%  Similarity=0.295  Sum_probs=49.9

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003487          455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  534 (816)
Q Consensus       455 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~  534 (816)
                      .+.-.+.+..||+-|++|+.+--.+          -+++..+...+.+++++....+++|+.+-.+|+++++....+++.
T Consensus        88 ~p~~~~rlp~le~el~~l~~~l~~~----------~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~  157 (206)
T PRK10884         88 TPSLRTRVPDLENQVKTLTDKLNNI----------DNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA  157 (206)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677888888888887443322          233445555566666666677777888888887776666666666


Q ss_pred             hHHHHHH
Q 003487          535 FRNEYAN  541 (816)
Q Consensus       535 l~aErda  541 (816)
                      +.+|.+.
T Consensus       158 l~~~~~~  164 (206)
T PRK10884        158 ANLQLDD  164 (206)
T ss_pred             HHHHHHH
Confidence            6555554

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=84.75  E-value=49  Score=36.25  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (816)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda  541 (816)
                      -+..|+..|..+++-++--++.+++|-.|+.+
T Consensus        78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~  109 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSA  109 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Confidence            35677899999999999899999999888877

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=84.54  E-value=70  Score=35.30  Aligned_cols=92  Identities=20%  Similarity=0.349  Sum_probs=71.2

Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 003487          533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  612 (816)
Q Consensus       533 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~AL  612 (816)
                      ..+.+|.+.-+-.+.+-.++...||-|.-..=+++.++...-=++++++.+++.++-.+.+++..+..+.-.++.-|.-+
T Consensus       161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~  240 (294)
T COG1340         161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL  240 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34457777778888888888888888888888888888777777788888888888888888888877777777777666


Q ss_pred             HHHHHHHHHHHH
Q 003487          613 QEEKKMMQSKLR  624 (816)
Q Consensus       613 QEEKklLqskLR  624 (816)
                      +..-+.|..+.+
T Consensus       241 ~k~ik~l~~~~~  252 (294)
T COG1340         241 EKKIKALRAKEK  252 (294)
T ss_pred             HHHHHHHHHHHH
Confidence            666666665555

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=84.47  E-value=37  Score=36.25  Aligned_cols=137  Identities=12%  Similarity=0.182  Sum_probs=75.9

Q ss_pred             HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 003487          489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL  568 (816)
Q Consensus       489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l  568 (816)
                      |+-+++.+-..+...|..++   ...-.+-..++.++..+...|+..+..|+.|-.+...|..+-...-++.-.=...+.
T Consensus        89 l~~~v~~~l~~~~~~l~~~r---k~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~e  165 (252)
T cd07675          89 MGHRVYGELMRYSHDLKGER---KMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVE  165 (252)
T ss_pred             HHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHH
Confidence            33334444444554444432   222255678889999999999999999999988888887774442222111111112


Q ss_pred             HHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh-----hhHHHHHHHH--HHHHH--HHHHHHhhcCCCC
Q 003487          569 RLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ--EEKKM--MQSKLRKASGSGK  631 (816)
Q Consensus       569 ~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~-----~lqsti~ALQ--EEKkl--LqskLRka~~~gk  631 (816)
                      ++|..-=+-...++..+   ..|..+|..+-+.-.     +|-.+++.||  ||+|.  |..-+..++.-|+
T Consensus       166 K~k~~~~~~~q~~e~aK---n~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~  234 (252)
T cd07675         166 KAKQQLNLRTHMADESK---NEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSER  234 (252)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222222333222   567777777655443     4888899999  56643  3333444444333

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=84.46  E-value=5.2  Score=46.94  Aligned_cols=29  Identities=34%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 003487          601 ERQDFQSTIEALQEEKKMMQSKLRKASGS  629 (816)
Q Consensus       601 eR~~lqsti~ALQEEKklLqskLRka~~~  629 (816)
                      ...--+.++++||.|-..|..+|+.+-.+
T Consensus       560 ~~~~k~~~l~~L~~En~~L~~~l~~le~~  588 (722)
T PF05557_consen  560 AEQIKKSTLEALQAENEDLLARLRSLEEG  588 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            34445689999999999999999876543

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=84.42  E-value=28  Score=35.39  Aligned_cols=55  Identities=25%  Similarity=0.329  Sum_probs=37.2

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 003487          536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  593 (816)
Q Consensus       536 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~r  593 (816)
                      +.|..+...-+..--.|-..|=.|||.|=-.+..+|+..   ++.|..++.|+-+|-+
T Consensus       126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~e~~r~~r  180 (182)
T PF15035_consen  126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRAEFARTSR  180 (182)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHc
Confidence            334444333334444455556699999999998888876   5788888888777654

>PF13166 AAA_13: AAA domain

Probab=84.27  E-value=88  Score=36.25  Aligned_cols=19  Identities=21%  Similarity=0.151  Sum_probs=10.6

Q ss_pred             CcccchHHHHHHHHHHhhc
Q 003487          785 ADEGDEVVERVLGWIMKLF  803 (816)
Q Consensus       785 ~DEgdeVveRvlgwimklf  803 (816)
                      .+-++..++..+.-+-++|
T Consensus       693 ~~~~~~~~~e~~~~~~~if  711 (712)
T PF13166_consen  693 IDMNPIDIEEYKKVFRKIF  711 (712)
T ss_pred             cCCChhhHHHHHHHHHHHh
Confidence            4445556666666555554

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=84.26  E-value=92  Score=36.47  Aligned_cols=55  Identities=15%  Similarity=0.156  Sum_probs=30.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Q 003487          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN  512 (816)
Q Consensus       458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~  512 (816)
                      ...++..|++-|+++..+.-.+...++..+.-.+.+..+-..+.+.|...|+..-
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~  261 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLF  261 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3345555665666655555555555555555555555555555666655555433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=83.90  E-value=87  Score=35.93  Aligned_cols=99  Identities=21%  Similarity=0.238  Sum_probs=56.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHhhh----hccc-------c
Q 003487          704 RMIHNINALISELALEKEELVQALSSEL--AQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN----ENIS-------F  770 (816)
Q Consensus       704 RmI~NInaLisELa~Ereel~~AL~~es--~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~ma~----e~~~-------a  770 (816)
                      +....++.=+.+-+.|+..++.+|+..-  +.-.++..+-..|+..|=.-+..||.+++.+-+-    |.+.       +
T Consensus       355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~  434 (511)
T PF09787_consen  355 RQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEAS  434 (511)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhcc
Confidence            4444455556667788888888888765  2233444445555544444455677776655432    1111       1


Q ss_pred             CCCCccccccccccCcccchHHHHHHHHHHhhcCCC
Q 003487          771 RQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGG  806 (816)
Q Consensus       771 ~~~ds~~~~~~~~~~DEgdeVveRvlgwimklfpgg  806 (816)
                      ....++   -...|.+.+|.+-.| +-+.|+..|+.
T Consensus       435 ~~~~~~---~~~~~~~~~~d~~~r-~~~~~~~~~~d  466 (511)
T PF09787_consen  435 NNRPSS---ILMKYSNSEDDAESR-VPLLMKDSPHD  466 (511)
T ss_pred             CCCCch---hhHhhccCCCchhhh-hhhhccCCCcc
Confidence            122222   234566677777777 67777777665

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=83.32  E-value=31  Score=40.03  Aligned_cols=107  Identities=23%  Similarity=0.310  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH-HHHHH
Q 003487          477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD-ERAKI  555 (816)
Q Consensus       477 faLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~-ERak~  555 (816)
                      .+|+|++..--++.|+-|+    |-++||+....-....+-++....                +||+....-|. -=++.
T Consensus       330 ~al~~A~~GhaR~lEqYad----LqEk~~~Ll~~Hr~i~egI~dVKk----------------aAakAg~kG~~~rF~~s  389 (488)
T PF06548_consen  330 DALQRAMEGHARMLEQYAD----LQEKHNDLLARHRRIMEGIEDVKK----------------AAAKAGVKGAESRFINS  389 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhccccchHHHHHH
Confidence            6899999999999999885    788999887766666655543333                34444433343 33789


Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       556 LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                      ||+|+-.|-..  +        |||.+-++.|-++++.|+.          +|-+|.|---. |..|||
T Consensus       390 laaEiSalr~e--r--------EkEr~~l~~eNk~L~~QLr----------DTAEAVqAagE-llvrl~  437 (488)
T PF06548_consen  390 LAAEISALRAE--R--------EKERRFLKDENKGLQIQLR----------DTAEAVQAAGE-LLVRLR  437 (488)
T ss_pred             HHHHHHHHHHH--H--------HHHHHHHHHHhHHHHHHHH----------hHHHHHHHHHH-HHHHHH
Confidence            99998655221  1        2333335566566655554          55555553222 345555

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.25  E-value=78  Score=39.27  Aligned_cols=31  Identities=42%  Similarity=0.437  Sum_probs=18.7

Q ss_pred             CCCCCccccCCccc---ccccccCCCCcccccCC
Q 003487          363 ASSGTLFEQTEPER---DSFMSSSSLNSMDVLGS  393 (816)
Q Consensus       363 a~~~t~~~~tEp~k---~~~l~SsS~N~~d~~gs  393 (816)
                      |-+|-+.|.+=|.-   -+|..+.|.|+++.+-+
T Consensus       261 a~sGq~lP~tlP~E~Vpp~~r~~rs~~sis~~~p  294 (1118)
T KOG1029|consen  261 AKSGQPLPKTLPPELVPPSFRSSRSANSISGLEP  294 (1118)
T ss_pred             HhcCCCCCCCCChhhcCcccccccCCCCcccccc
Confidence            34455566655554   46777777777765544

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=83.24  E-value=12  Score=44.45  Aligned_cols=19  Identities=21%  Similarity=0.581  Sum_probs=9.4

Q ss_pred             HHHHhhhHHHHHHHHHHhh
Q 003487          578 ERQLENSQSEISSYKKKIS  596 (816)
Q Consensus       578 erele~l~~E~~s~~rqls  596 (816)
                      +++|++...+++.+++++.
T Consensus       487 ~~~L~e~~~~ve~L~~~l~  505 (652)
T COG2433         487 EKELEEKKKRVEELERKLA  505 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555444

>TIGR02473 flagell_FliJ flagellar export protein FliJ

Probab=83.19  E-value=37  Score=31.13  Aligned_cols=31  Identities=16%  Similarity=0.275  Sum_probs=13.7

Q ss_pred             HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 003487          580 QLENSQSEISSYKKKISSLEKERQDFQSTIE  610 (816)
Q Consensus       580 ele~l~~E~~s~~rqlsslekeR~~lqsti~  610 (816)
                      .+..+..++..++..+..+.+++..|..+.+
T Consensus        83 ~l~~~~~~~e~~r~~l~~a~~~~k~lekL~e  113 (141)
T TIGR02473        83 ELALLQQEVEAKRERLLEARRELKALEKLKE  113 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444443

Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=83.09  E-value=15  Score=33.52  Aligned_cols=72  Identities=24%  Similarity=0.282  Sum_probs=59.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  532 (816)
Q Consensus       457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l  532 (816)
                      .+-.++..||+-|--|+.||-.--.-.-.+++-.+.|-.||-.|....+.+...+.+|++    ++.++..++..+
T Consensus        21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~   92 (96)
T PF08647_consen   21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNL   92 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHh
Confidence            455789999999999999998877777788888999999999999999999999999988    555555555443

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7

Probab=82.93  E-value=65  Score=33.71  Aligned_cols=58  Identities=14%  Similarity=0.240  Sum_probs=39.3

Q ss_pred             HHHHHHHHhhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 003487          488 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  545 (816)
Q Consensus       488 ~l~EsLA~ENsa-LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle  545 (816)
                      .+++.|.+|+.. |..=...+...+..++..|+.++..++....++...+..|..+-.+
T Consensus        78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke  136 (233)
T cd07649          78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKD  136 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666633 3333344566778888889999998888888888887777654333

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=82.70  E-value=1.3e+02  Score=36.93  Aligned_cols=126  Identities=21%  Similarity=0.306  Sum_probs=69.0

Q ss_pred             HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH----HHHH
Q 003487          492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL----EEKA  567 (816)
Q Consensus       492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L----EEk~  567 (816)
                      .|--||..|...++.-+..+..++.+|.--...-.-.+-.++.+..+-...|-+.+.+.+-.+.--.||-..    |+.+
T Consensus       496 kLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~  575 (786)
T PF05483_consen  496 KLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENA  575 (786)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence            344556666666666666666666666554444334444455555555555555555555555555555431    1112


Q ss_pred             HHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487          568 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (816)
Q Consensus       568 l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR  624 (816)
                      +-.-...++.++++.-+.-.+.-++++|+       .-...|+.||.|-|+|..++-
T Consensus       576 r~~e~e~~~k~kq~k~lenk~~~LrKqvE-------nk~K~ieeLqqeNk~LKKk~~  625 (786)
T PF05483_consen  576 RSIECEILKKEKQMKILENKCNNLRKQVE-------NKNKNIEELQQENKALKKKIT  625 (786)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHH
Confidence            22222344555555555555555555555       334578888888888887765

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=82.57  E-value=1.3e+02  Score=38.23  Aligned_cols=169  Identities=22%  Similarity=0.341  Sum_probs=89.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHhhhHHHHHH
Q 003487          460 EDFAALEQHIEDLTQEKFALQRS-----------------------------------LEASRALSESLAAENSSLTDSY  504 (816)
Q Consensus       460 ~~faaLqqhIeDLT~EKfaLqR~-----------------------------------L~~s~~l~EsLA~ENsaLTd~y  504 (816)
                      .+..-|+--+.-|-.||-.+++.                                   |+.-..-.+.--.|-+++--+|
T Consensus       272 ~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky  351 (1200)
T KOG0964|consen  272 CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY  351 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            46677777777777777666554                                   1111122233345566677788


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHH---HHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487          505 NQQRSVVNQLKSEMEKLQEEIK---VQLVELESF----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLR  571 (816)
Q Consensus       505 NqQ~~~v~qLk~dmEqLq~Ei~---aQ~~~le~l----------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR  571 (816)
                      |.+...-+.++..+..|++...   +-...-.+|          +.|+-..-...+.-.|+-..|..|.-.||...-..=
T Consensus       352 ~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~  431 (1200)
T KOG0964|consen  352 NSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKL  431 (1200)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888877777766322   111122222          333334445556666677777777766654433221


Q ss_pred             hhhhhhHHHHhhhHHHHHH-------HHHHhhhHHHhh-------hhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487          572 SNELKLERQLENSQSEISS-------YKKKISSLEKER-------QDFQSTIEALQEEKKMMQSKLRKASG  628 (816)
Q Consensus       572 S~ELKlerele~l~~E~~s-------~~rqlsslekeR-------~~lqsti~ALQEEKklLqskLRka~~  628 (816)
                      ..-=+++..+.....+++.       .++++..+.-.|       .-|++.|+++.+.-..-+..|+.+..
T Consensus       432 e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~  502 (1200)
T KOG0964|consen  432 EEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMN  502 (1200)
T ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1111223333322222222       233333333333       34567777777777777777775433

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=82.54  E-value=54  Score=32.52  Aligned_cols=33  Identities=30%  Similarity=0.309  Sum_probs=14.9

Q ss_pred             HHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHH
Q 003487          559 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  594 (816)
Q Consensus       559 EVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rq  594 (816)
                      |...+|.|+..+   .-|+..++.+++.+|++.+-.
T Consensus       121 e~~~~~~ki~e~---~~ki~~ei~~lr~~iE~~K~~  153 (177)
T PF07798_consen  121 EQAKQELKIQEL---NNKIDTEIANLRTEIESLKWD  153 (177)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444333   234445555555555544433

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=82.49  E-value=79  Score=39.93  Aligned_cols=88  Identities=23%  Similarity=0.295  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 003487          467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  546 (816)
Q Consensus       467 qhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~  546 (816)
                      -.|.|++.|=--|-|.|.++|+=.==.-.     -++|=+.-...++...++++|++||++-...+..+.+=|..-...+
T Consensus       404 ~llKd~~~EIerLK~dl~AaReKnGvyis-----ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~  478 (1041)
T KOG0243|consen  404 TLLKDLYEEIERLKRDLAAAREKNGVYIS-----EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIK  478 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhCceEec-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            57899999999999999998873321111     1344444444555555555555555555555566655555444444


Q ss_pred             hhHHHHHHHHHHH
Q 003487          547 NAADERAKILASE  559 (816)
Q Consensus       547 ~aA~ERak~LAaE  559 (816)
                      ..-.++-..|-..
T Consensus       479 ~~l~~~~~~~k~~  491 (1041)
T KOG0243|consen  479 ELLKEEKEKLKSK  491 (1041)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444433

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=82.42  E-value=17  Score=31.89  Aligned_cols=52  Identities=23%  Similarity=0.226  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003487          478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL  529 (816)
Q Consensus       478 aLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~  529 (816)
                      .+.|-++........|..|++....+-=.-......|+.+++.|+.|++.++
T Consensus        16 ~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r   67 (69)
T PF14197_consen   16 SLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR   67 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4456677777888888888888887777777788888888888888865543

>TIGR02231 conserved hypothetical protein

Probab=82.37  E-value=8.8  Score=43.27  Aligned_cols=45  Identities=16%  Similarity=0.148  Sum_probs=26.0

Q ss_pred             hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487          584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (816)
Q Consensus       584 l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~  628 (816)
                      +..-...+..++..+..++.++...+..++++...|+.+|.++..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~  173 (525)
T TIGR02231       129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT  173 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            333334444555555555555666666666777777777766554

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.24  E-value=84  Score=37.68  Aligned_cols=133  Identities=20%  Similarity=0.310  Sum_probs=81.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH-------
Q 003487          488 ALSESLAAENSSLTDSYNQQRSVV-NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE-------  559 (816)
Q Consensus       488 ~l~EsLA~ENsaLTd~yNqQ~~~v-~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE-------  559 (816)
                      +--+-|-+--+-+-++|=...+.| .++++-+.+|+..++.|+-.+.-...||.-       ..|||-.||.-       
T Consensus       559 E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~-------i~e~a~~La~R~eea~e~  631 (741)
T KOG4460|consen  559 ECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKS-------LREMAERLADRYEEAKEK  631 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence            333444455555666776666555 578888999999999999988888888765       34444444432       


Q ss_pred             HHhHHHHHHHHhhh-----------hhhhHHHHhhhHHHHHHHHHHhhhH----HHhhhhhHHHHHHHH--------HHH
Q 003487          560 VIGLEEKALRLRSN-----------ELKLERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQ--------EEK  616 (816)
Q Consensus       560 VV~LEEk~l~LRS~-----------ELKlerele~l~~E~~s~~rqlssl----ekeR~~lqsti~ALQ--------EEK  616 (816)
                      --.|+.+|.+||+.           |+.-.+|++-+..+.+.+...++-+    .|.|+|+...+.|||        .+.
T Consensus       632 qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~  711 (741)
T KOG4460|consen  632 QEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQR  711 (741)
T ss_pred             HHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHH
Confidence            23578888888763           3333444444444444443333332    357778877777777        233


Q ss_pred             HHHHHHHHhhc
Q 003487          617 KMMQSKLRKAS  627 (816)
Q Consensus       617 klLqskLRka~  627 (816)
                      +-+|+-|-++.
T Consensus       712 ~~iqsiL~~L~  722 (741)
T KOG4460|consen  712 KCIQSILKELG  722 (741)
T ss_pred             HHHHHHHHHHH
Confidence            55666665543

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.91  E-value=7.3  Score=37.80  Aligned_cols=67  Identities=24%  Similarity=0.393  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 003487          553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGK  631 (816)
Q Consensus       553 ak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~~gk  631 (816)
                      -..|-.|+..|.+++..++..       +..+..|+..+.+.+..     .+|+..|+.|++|.+.|..||..+-.+..
T Consensus        74 l~~ld~ei~~L~~el~~l~~~-------~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~~  140 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKE-------VKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGSK  140 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            444555555555555555433       33444444444444442     25777888888888888888887655333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=81.90  E-value=1.3e+02  Score=36.64  Aligned_cols=99  Identities=20%  Similarity=0.295  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH-------HHHHHhhhhhhhHHHHhhhHH
Q 003487          514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE-------KALRLRSNELKLERQLENSQS  586 (816)
Q Consensus       514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE-------k~l~LRS~ELKlerele~l~~  586 (816)
                      .+.+.+||...........+.+..||...|-+.-++-.|=..|-.+--.|||       ++--||++-+    |.|+++.
T Consensus        53 ~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv----efE~~Kh  128 (717)
T PF09730_consen   53 VQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV----EFEGLKH  128 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH----HHHHHHH
Confidence            3334444444444444444444555555555555555565555555555554       5556666655    4456666


Q ss_pred             HHHHHH-------HHhhhHHHhh----hhhHHHHHHHHHHH
Q 003487          587 EISSYK-------KKISSLEKER----QDFQSTIEALQEEK  616 (816)
Q Consensus       587 E~~s~~-------rqlsslekeR----~~lqsti~ALQEEK  616 (816)
                      ||++++       .|++-+.+=|    ..|...+++||.|+
T Consensus       129 ei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER  169 (717)
T PF09730_consen  129 EIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER  169 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665554       4555444333    24677888898766

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)

Probab=81.60  E-value=71  Score=33.21  Aligned_cols=131  Identities=13%  Similarity=0.123  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 003487          477 FALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  544 (816)
Q Consensus       477 faLqR~L~~s~~l~EsLA~ENsaLTd~yNq------------Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl  544 (816)
                      ..|..++..-..-+|.+|.-+..|...-..            |...-..++..+++++.-+......+...+..|..+--
T Consensus        58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k  137 (239)
T cd07658          58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR  137 (239)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555556666666555554432            22233445555555666555555566666666666555


Q ss_pred             hhhhHHHHHH--------------------HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 003487          545 ECNAADERAK--------------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  604 (816)
Q Consensus       545 e~~aA~ERak--------------------~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~  604 (816)
                      +...|..+..                    .-..|+--|+.|+.+.+....|.+.+.......+..++..-.      .+
T Consensus       138 E~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~------~~  211 (239)
T cd07658         138 ENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWE------SA  211 (239)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence            5555544331                    122455556666666655555555555554444444443333      34


Q ss_pred             hHHHHHHHH
Q 003487          605 FQSTIEALQ  613 (816)
Q Consensus       605 lqsti~ALQ  613 (816)
                      |..+++.+|
T Consensus       212 ~~~~~~~~Q  220 (239)
T cd07658         212 LRKGLNQYE  220 (239)
T ss_pred             HHHHHHHHH
Confidence            667777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=81.20  E-value=11  Score=35.15  Aligned_cols=81  Identities=22%  Similarity=0.337  Sum_probs=52.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487          458 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  526 (816)
Q Consensus       458 ~~~~faaLqqhIeDLT~EKfa-----------LqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~  526 (816)
                      ..-||++||.||..+|-=++.           +.+-+.=+|=..|-|-.-.+-|.+........+.++..+.++|+..++
T Consensus        25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~  104 (118)
T PF13815_consen   25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK  104 (118)
T ss_pred             hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999977643321           233444455556666666666666666666666667777777777766


Q ss_pred             HHHHHhhhhHHH
Q 003487          527 VQLVELESFRNE  538 (816)
Q Consensus       527 aQ~~~le~l~aE  538 (816)
                      .+..++..++.|
T Consensus       105 ~~~~~~k~lk~E  116 (118)
T PF13815_consen  105 KQKEEIKKLKKE  116 (118)
T ss_pred             HHHHHHHHHHHh
Confidence            666666666655

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=81.07  E-value=59  Score=35.25  Aligned_cols=69  Identities=25%  Similarity=0.383  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 003487          553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  621 (816)
Q Consensus       553 ak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqs  621 (816)
                      .+.+..+|-.++..|-.+.++|-.|+..++.-+.|+++.++++.+|.+=|=-.....+.|.+|-+.|..
T Consensus       171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~  239 (267)
T PF10234_consen  171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE  239 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            345667777888888888888888888888889999999999999999999999999999999876654

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=81.04  E-value=53  Score=31.39  Aligned_cols=74  Identities=20%  Similarity=0.346  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh
Q 003487          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN  583 (816)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~  583 (816)
                      .-..|...+.+++.++......++.++...+.+..++..+.++-+.|-.++-.++.....++-+--|+...+..
T Consensus        53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~  126 (151)
T PF11559_consen   53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ  126 (151)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555555555555555555555555666666666666666666555555544444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=80.48  E-value=96  Score=34.06  Aligned_cols=22  Identities=9%  Similarity=0.213  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 003487          607 STIEALQEEKKMMQSKLRKASG  628 (816)
Q Consensus       607 sti~ALQEEKklLqskLRka~~  628 (816)
                      ..+.+++-+.+.++.+|.++-.
T Consensus       227 ~~~~~~~~~l~~~~~~l~~~~~  248 (421)
T TIGR03794       227 KELETVEARIKEARYEIEELEN  248 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666777777765433

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=80.45  E-value=86  Score=38.13  Aligned_cols=73  Identities=21%  Similarity=0.331  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH-------HHHHHHHHHHHHHH
Q 003487          552 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE-------ALQEEKKMMQSKLR  624 (816)
Q Consensus       552 Rak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~-------ALQEEKklLqskLR  624 (816)
                      +...+..|.-.+.-.+-.++..-+.+.+.++-|+.+.+.+.+++.-++..=.++...|+       .||||-..|.-+|.
T Consensus       539 ~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle  618 (698)
T KOG0978|consen  539 NESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE  618 (698)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444445555555544444444443334333333       34455555554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	816
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	6e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	3e-07
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	9e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	1e-04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	1e-04
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	1e-04
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.4 bits (192), Expect = 7e-15
 Identities = 67/528 (12%), Positives = 142/528 (26%), Gaps = 156/528 (29%)

Query: 401 MEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRL-----GSNESSIENQHGFYS 455
           ++       SK    +I      + +    +       RL        E  ++    F  
Sbjct: 38  VQDMPKSILSKEEIDHI------IMSKDAVSG----TLRLFWTLLSKQEEMVQK---FVE 84

Query: 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-SVVNQL 514
                ++  L   I+   ++   + R     R   + L  +N      YN  R     +L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAK-YNVSRLQPYLKL 140

Query: 515 KSEMEKLQEEIKV----------QLVELESFRNE-----------YANVRLECNAADERA 553
           +  + +L+    V            V L+   +            + N++  CN+ +   
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVL 199

Query: 554 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ---------- 603
           ++L      L     ++  N         N +  I S + ++  L K +           
Sbjct: 200 EMLQK----L---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 604 ----------DFQSTI----------EAL--QEEKKMMQSKLRKASGSGKSID-FGKTAA 640
                     +    I          + L       +            +      K   
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--- 309

Query: 641 STVNASTSTEDL-----------------AITD--TTLDNSNQDTHDDASLPR-IDASGS 680
                    +DL                 +I D   T DN      D   L   I++S +
Sbjct: 310 ---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLN 364

Query: 681 TLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALE------KEELVQALSSELAQS 734
            L P   R   + L+V  P           A I  + L        +  V  + ++L + 
Sbjct: 365 VLEPAEYRKMFDRLSV-FPPS---------AHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 735 SKLKDLNNELSRKLEHQTQRLELLTAQNMA--NENI--SFRQPDSASTHD---------- 780
           S ++    E +  +         +  +N    + +I   +  P +  + D          
Sbjct: 415 SLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 781 --HTAY----ADEGDEVVE--RV---LGWI-MKLFPGGPSRRRTSKLL 816
             H  +     +  + +     V     ++  K+     +   +  +L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 2e-11
 Identities = 93/709 (13%), Positives = 194/709 (27%), Gaps = 265/709 (37%)

Query: 48  DFSLHDQHHLEADRVRV------TDLDGAGTSDGPDKAVVSLPLVMH-----NDDNKALK 96
           DF   +  +   D + V       + D     D P K+++S   + H     +  +  L+
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLR 66

Query: 97  L-----AQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQE 151
           L     ++Q + V    ++      E  L  +  +L                       E
Sbjct: 67  LFWTLLSKQEEMV----QKF----VEEVLRINYKFLMSPIKT-----------------E 101

Query: 152 TKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGND 211
            +  +    +Y   + RL +                                      N 
Sbjct: 102 QRQPSMMTRMYIEQRDRLYND-------------------------------------NQ 124

Query: 212 SFPKVPTLVNSGPSHDFVTKISPQNSVST-LFQSKPSNAIAL----GNG----------- 255
            F K             V+++ P   +   L + +P+  + +    G+G           
Sbjct: 125 VFAK-----------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 256 HSFHSSSEGTAH-LTTSTGGSASEV-----GLNTPSTTNFSDPVSFNTGEGKPSNSASGL 309
           +      +     L      S   V      L      N++     ++      +S    
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 310 AS--LQSTPFKRS-------------EYSGYNFD------------------AGNSFNHV 336
               L+S P++                     F+                  +  +  H+
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 337 PVSSATNKFTLGKSRASFLDSLNV-------------PRASS--GTL----------FEQ 371
            +   +   T  + ++  L  L+              PR  S               ++ 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 372 TEPERDSFMSSSSLNSMDVLGSSPAQNPSMEK---ETTGAFSKTTTSNIPSA------FD 422
              ++ + +  SSLN ++         P+  +   +    F  +   +IP+       FD
Sbjct: 350 VNCDKLTTIIESSLNVLE---------PAEYRKMFDRLSVFPPSA--HIPTILLSLIWFD 398

Query: 423 YLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRS 482
                 V  SD   +       S +E        K  ++       I  +  E   L+  
Sbjct: 399 ------VIKSDVMVVVNKLHKYSLVE--------KQPKESTI---SIPSIYLE---LKVK 438

Query: 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE--------------MEKLQEEIKVQ 528
           LE   AL       + S+ D YN  ++  +                   ++ ++   ++ 
Sbjct: 439 LENEYAL-------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 529 LVELESFRNEYANVR-LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 587
           L     FR  + + R LE        KI           A     + L   +QL+  +  
Sbjct: 492 L-----FRMVFLDFRFLE-------QKIRHDST------AWNASGSILNTLQQLKFYKPY 533

Query: 588 IS----SYKKKISSLEKERQDFQSTIEA---LQEEKKMMQSKLRKASGS 629
           I      Y++ ++++     DF   IE      +   +++  L     +
Sbjct: 534 ICDNDPKYERLVNAIL----DFLPKIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 1e-06
 Identities = 52/351 (14%), Positives = 96/351 (27%), Gaps = 129/351 (36%)

Query: 448 ENQHGF------YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT 501
           E+Q+ +      +     ++F    + ++D+ +   +     E    +            
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILS---KEEIDHIIMSK--------- 58

Query: 502 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY----ANVRLECNAADERAKILA 557
           D+ +    +   L S+    QEE+  + VE E  R  Y    + ++ E            
Sbjct: 59  DAVSGTLRLFWTLLSK----QEEMVQKFVE-EVLRINYKFLMSPIKTEQR---------- 103

Query: 558 SEVIGLEEKALRLRSNELKLERQLENSQSEISSY----KKKISSLEKERQDFQSTIEALQ 613
                  + ++  R    + +R L N     + Y     +    L +          AL 
Sbjct: 104 -------QPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQ----------ALL 145

Query: 614 EEKKMMQSKLRKAS--------GSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQD 665
           E        LR A         GSGK+                   +A+ D  L    Q 
Sbjct: 146 E--------LRPAKNVLIDGVLGSGKTW------------------VAL-DVCLSYKVQC 178

Query: 666 THDDA----SLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKE 721
             D      +L                        N P   + M+  +   I        
Sbjct: 179 KMDFKIFWLNL--------------KN-------CNSPETVLEMLQKLLYQIDP------ 211

Query: 722 ELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENI--SF 770
                         ++  +  EL R L+ +     LL   N+ N     +F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 58/325 (17%), Positives = 114/325 (35%), Gaps = 46/325 (14%)

Query: 462  FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV---------- 511
               LEQ    L +EK  LQ  L+A   L          L     +   ++          
Sbjct: 880  LKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE 939

Query: 512  ----NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 567
                 QL++E +K+Q+++     +LE        ++LE   AD + K +  +++ +E++ 
Sbjct: 940  EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999

Query: 568  LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL-----QEEKKMMQSK 622
             +L      LE ++ +  + ++  ++K  +L K +   +S I  L     +EEK   + +
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059

Query: 623  LRKASGSGKSIDFGKTAASTVNASTSTED-LAITDTTLDNSNQDTHDDASLPRIDASGST 681
              K    G+S D  +  A         +  LA  +  L  +     D+ S          
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN------- 1112

Query: 682  LLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLN 741
                               + ++ I  + + IS+L  + E    A +    Q   L +  
Sbjct: 1113 -------------------NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

Query: 742  NELSRKLEHQTQRLELLTAQNMANE 766
              L  +LE              ++ 
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDY 1178

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 71.8 bits (176), Expect = 6e-13
 Identities = 25/171 (14%), Positives = 63/171 (36%)

Query: 456  TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 515
             K   +    +  I+ +  +   ++          + L    S LT +  ++      L 
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 516  SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 575
                K +  I    V L+        +       +  +  L  ++  L+ +   L++   
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 576  KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            K E +L+ + + +     + ++  K+ ++ +S I  LQE+ +  ++   KA
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 68.3 bits (167), Expect = 8e-12
 Identities = 33/195 (16%), Positives = 76/195 (38%), Gaps = 10/195 (5%)

Query: 437  IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 496
            I+++  +   +E+Q+     K  ++   LE+ + DLT      +   +    L     + 
Sbjct: 985  IKKMEDDILIMEDQN----NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040

Query: 497  NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556
             S L     ++     +L+    KL+ E      ++   + + A ++ +    +E  +  
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 557  ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE- 615
             + +     +         +LE  + + Q ++ S K   +  EK+++D    +EAL+ E 
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

Query: 616  -----KKMMQSKLRK 625
                     Q +LR 
Sbjct: 1161 EDTLDTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 23/161 (14%), Positives = 62/161 (38%), Gaps = 3/161 (1%)

Query: 459  NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
             E    L +           L+  L+      + L      L    +     + +L++++
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 519  EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
             +L+ ++  +  EL++      +   + N A ++ + L S +  L+E     ++   K E
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 579  RQLENSQSEISSYKKKISSLEKE---RQDFQSTIEALQEEK 616
            +Q  +   E+ + K ++         +Q+ + +     ++K
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 63.3 bits (154), Expect = 3e-10
 Identities = 53/324 (16%), Positives = 113/324 (34%), Gaps = 36/324 (11%)

Query: 455  STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 514
             T+  E+  A ++ ++   + +   +  L+        L  E + L     ++     +L
Sbjct: 852  VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ----EKLQAETEL 907

Query: 515  KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 574
             +E E+++  +  +  ELE   +E             R +        L+ +  +++   
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEME----------ARIEEEEERSQQLQAEKKKMQQQM 957

Query: 575  LKLERQLE-------NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
            L LE QLE         Q E  +   KI  +E +    +     L +E+K+++ ++   +
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 628  GSGKSIDFGKTAASTVNAS--TSTEDLAITDTTLDNSNQDTHD------------DASLP 673
             +    +      + +     +   +L +     + S Q+                  + 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 674  RIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNI-NALISELALEKEELVQALSSELA 732
             + A  + L  +  +   E  A     +      N     I EL     +L + L SE A
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 733  QSSKLKDLNNELSRKLEHQTQRLE 756
              +K +    +LS +LE     LE
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELE 1161

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 52/312 (16%), Positives = 110/312 (35%), Gaps = 27/312 (8%)

Query: 472  LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531
            L      L +       +      E     +   +  + + +L+ +  +L EE  +   +
Sbjct: 842  LFFXIXPLLKVTRQEEEMQA-KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900

Query: 532  LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 591
            L++    YA        A+E    LA++   LEE    + +   + E + +  Q+E    
Sbjct: 901  LQAETELYAE-------AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953

Query: 592  KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSID------------FGKTA 639
            ++++  LE++ ++ ++  + LQ EK     K++K       ++              +  
Sbjct: 954  QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

Query: 640  ASTVNASTSTEDLAITDTTLDNSNQDTHDD--ASLPRIDASGSTLLPESGRLALEG---L 694
            +         E+ A   T L N ++    +    L + + S   L  E  +  LEG    
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL--EKIKRKLEGESSD 1071

Query: 695  AVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 754
                  +    I  + A +++   E +  +  L  E +Q +       EL   +    + 
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 755  LELLTAQNMANE 766
            LE   A     E
Sbjct: 1132 LESEKAARNKAE 1143

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 12/159 (7%)

Query: 465  LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524
            L++ I++  +E  +L   +        +   +  S  +             + +  LQEE
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992

Query: 525  IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 584
            I     EL   + E   +    +      + L SE   L+E+   L++ + +L R++ + 
Sbjct: 993  IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQ 1049

Query: 585  QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623
              EI+         E   +      + L+ +    + + 
Sbjct: 1050 AKEIT---------ETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 3/149 (2%)

Query: 478  ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537
               RS+E  + L   L  +   L    ++Q      L  +M  L+     +  +L S   
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 538  EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 597
                   E   A  R   L  E+  L ++  + ++ +  +E   +  + E    ++ +S 
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET---EQLVSE 1027

Query: 598  LEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            L+++    ++  E L         ++ + 
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITET 1056

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.7 bits (145), Expect = 3e-09
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 463  AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522
              LE  I  L ++       ++      +SL  + ++L  +Y+ +   +      +   +
Sbjct: 924  IGLENKIMQLQRK-------IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 523  EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 582
            EE K     + S + E A +R E +      K +       + +         +L+ Q  
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE---TEQLVSELKEQNT 1033

Query: 583  NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
              ++E     ++I    KE  +     + L EE K ++  L   
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETME--KKLVEETKQLELDLNDE 1075

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.3 bits (136), Expect = 4e-08
 Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 35/242 (14%)

Query: 520  KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579
             +Q+ ++  L  +   R   A V L+C      AK    ++        R +   + LE 
Sbjct: 869  IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928

Query: 580  QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTA 639
            ++   Q +I    K+  SL ++  + + T     E+ +    +LR +          +  
Sbjct: 929  KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS--------EEEAK 980

Query: 640  ASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIP 699
             +T    +  E++A     L  +  +                         +E  A    
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQTEKKT----------------------IEEWADKYK 1018

Query: 700  HDQMRMIHNINALISELALEKEELVQALSSEL-----AQSSKLKDLNNELSRKLEHQTQR 754
            H+  +++  +    + L  EKEEL + +  +          KL +   +L   L  +  R
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

Query: 755  LE 756
             +
Sbjct: 1079 YQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 466  EQHIEDLTQEKFALQRSLEASRALSE--SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523
              H     +    LQ       A  E   L  E  S+     + + +   L++++ +LQ 
Sbjct: 880  RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV----ERYKKLHIGLENKIMQLQR 935

Query: 524  EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 583
            +I  Q  E +S   +  N  LE   + E  K+ +       E+             ++ +
Sbjct: 936  KIDEQNKEYKSLLEKMNN--LEITYSTETEKLRS-----DVERLRMSEEEAKNATNRVLS 988

Query: 584  SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
             Q EI+  +K++   + E++  +   +  + E + + S+L++ 
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 463  AALEQHIEDLTQEKFALQRSLEASRALSE---SLAAENSSLTDSYNQQRSVVNQLKSEME 519
                   E L  +   L+ S E ++  +    SL  E + L    +Q ++    ++   +
Sbjct: 956  ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015

Query: 520  KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579
            K + E +  + EL+    +   ++ E    + R    A E+    EK L   + +L+L+ 
Sbjct: 1016 KYKHETEQLVSELKE---QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072

Query: 580  QLENSQSE 587
              E  + +
Sbjct: 1073 NDERLRYQ 1080

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 54.7 bits (131), Expect = 4e-08
 Identities = 23/171 (13%), Positives = 66/171 (38%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           +  E  A   Q +E+  +     +R ++   + ++    +         + + +      
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           + E++  ++ +   +LE           +C   +E  K + + +  LE +A +    E K
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDK 220

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
            E +++    ++   + +    E+     + +I+ L++E    + K +  S
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS 271

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 53.5 bits (128), Expect = 9e-08
 Identities = 24/168 (14%), Positives = 64/168 (38%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
            E     E+   D   +  +L R ++      +      ++      +     ++ +  M
Sbjct: 68  QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
           + ++   +    ++E    +    +     AD + + +A +++ +E    R        E
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187

Query: 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            +    + EI +    + SLE + + +    +  +EE K++  KL++A
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 20/158 (12%), Positives = 60/158 (37%)

Query: 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528
           ++ + ++   L+   E +   ++   A+  +  D   Q    +  L+ +++  ++E+   
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 529 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 588
              L+  + +      +   A+     L   +   EE+  R +       ++LE ++   
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 589 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
              ++ +  +E   Q  +  +E  + + K  +     A
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA 158

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 21/173 (12%), Positives = 61/173 (35%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           +  ++  +L++ ++    E      +L+ ++   E    + +            +   + 
Sbjct: 38  QLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE 97

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           E+++ QE +   L +LE                + RA+    ++   E +    +     
Sbjct: 98  ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 157

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 629
            +R+ E    ++   +  +   E+  +  +     L+EE K + + L+     
Sbjct: 158 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQ 210

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 19/164 (11%), Positives = 64/164 (39%)

Query: 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523
           A+++ ++ L  +K       + + A  ++    +  L D     +  +   + E++K  E
Sbjct: 3   AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62

Query: 524 EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 583
            +K    +LE    +  +   +  + + R ++   E+   +E+         + E+  + 
Sbjct: 63  ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122

Query: 584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
           S+  +   + +    E++ +  +  ++  +   +    K  + +
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA 166

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 17/167 (10%), Positives = 60/167 (35%)

Query: 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519
           ++     + ++D  ++    ++    + A   SL        +  ++ +  +     ++E
Sbjct: 55  DELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLE 114

Query: 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579
           + ++        ++   +       +    + + K         + K   +    + +E 
Sbjct: 115 EAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 174

Query: 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            LE ++      + K + LE+E +   + +++L+ + +    K  K 
Sbjct: 175 DLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKY 221

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 26/170 (15%), Positives = 64/170 (37%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           +   D  A E   + L  E  +LQ+ L+A+    +  +       +            ++
Sbjct: 24  EAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           ++  L   I++   EL+  +   A    +   A++ A      +  +E +A +       
Sbjct: 84  DVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEI 143

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            E QL+ ++       +K   + ++    +S +E  +E  ++ + K  + 
Sbjct: 144 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAEL 193

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 18/168 (10%), Positives = 57/168 (33%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
            +     E+  ++  +    ++   +      E    +                ++  ++
Sbjct: 110 LQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL 169

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
             ++ +++      E    + A +  E        K L ++     +K  +       L 
Sbjct: 170 VIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 229

Query: 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            +L+ +++     ++ ++ LEK   D +  + A + + K +  +L  A
Sbjct: 230 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 47.7 bits (113), Expect = 6e-06
 Identities = 22/164 (13%), Positives = 60/164 (36%)

Query: 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519
           +     E+ ++ +       +  +E      +            Y +    +  ++S++E
Sbjct: 118 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 177

Query: 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579
           + +E  ++   +      E   V     + + +A+  + +    EE+   L     + E 
Sbjct: 178 RAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 237

Query: 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623
           + E ++  ++  +K I  LE E    +   +A+ EE     + +
Sbjct: 238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 6/250 (2%)

Query: 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571
           + +K +M+ L+ + +  L   +    +           ++    L  ++   E++  +  
Sbjct: 2   DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61

Query: 572 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGK 631
                 + +LE ++ + +  +  ++SL +  Q F+  ++  QE       KL +A    K
Sbjct: 62  EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE---K 118

Query: 632 SIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLAL 691
           + D  +     + +    ++  +    +         + +  + +     L+     L  
Sbjct: 119 AADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 178

Query: 692 EGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ 751
                            +   I  +    + L         +  K ++    LS KL+  
Sbjct: 179 AEERAE---LSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

Query: 752 TQRLELLTAQ 761
             R E     
Sbjct: 236 ETRAEFAERS 245

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 18/117 (15%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570
           ++ L+  + + ++++   L + E+      N+  E  A   +       +     K   +
Sbjct: 20  IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79

Query: 571 RS--NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
           +   +E+K ER+L +   E    K++ +   +E ++ Q+ I+   E+++ ++ ++ +
Sbjct: 80  QKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE 136

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 1/115 (0%)

Query: 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-ILASEVIGLEEKALRL 570
             +     K +     +L+E+E    +  N         +  K I  SE   L +   +L
Sbjct: 23  CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQL 82

Query: 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
                K+  ++   ++ I +++  I  L        + I  L+++   ++S  ++
Sbjct: 83  TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 26/160 (16%), Positives = 64/160 (40%), Gaps = 4/160 (2%)

Query: 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528
           +  L ++       L      +  L   ++ ++ S +Q  S+  +L+     L+      
Sbjct: 8   LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQT 67

Query: 529 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 588
             +    +      R +     E    L + +  L+E+   L+ N  K+E + + +Q  +
Sbjct: 68  DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127

Query: 589 SSYKKKISSLEKER----QDFQSTIEALQEEKKMMQSKLR 624
           +  +K+ ++LE +     +  Q  +E    E K+ +++L 
Sbjct: 128 NHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLT 167

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 20/111 (18%), Positives = 49/111 (44%)

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           ++ +LQ++++     L +  +    +R       +    L S    L+E+   L +++ +
Sbjct: 7   KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQ 66

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
            ++     Q+ + + ++      +   D Q+ I +LQEE K ++  L K  
Sbjct: 67  TDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 16/115 (13%), Positives = 49/115 (42%)

Query: 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570
           +  +K E  +L+E ++      +    +  ++  E N    + +     +   EE+  +L
Sbjct: 15  MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74

Query: 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
             N+++LE +++     +   ++  + L  +++  +     L+ +   ++  L K
Sbjct: 75  IKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK 129

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 20/150 (13%), Positives = 56/150 (37%)

Query: 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524
           LE  +E+L  + + L+  +   + L E              +    +  + + ++ L+ +
Sbjct: 5   LEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQ 64

Query: 525 IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 584
            +    + + +  E   +  +   A+ RA+     V  LE+    L       + + +  
Sbjct: 65  AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124

Query: 585 QSEISSYKKKISSLEKERQDFQSTIEALQE 614
             E+   + K+  L  +    ++ +  L++
Sbjct: 125 SEEMKQLEDKVEELLSKNYHLENEVARLKK 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00