Citrus Sinensis ID: 003488

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810------
Protein Sequence
MVTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIRRQSTRIFLS
Secondary Structure (PSIPRED)
cccccEEEEEcccccccEEccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccHHHHHcccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEEccccccccccccEEEccccEEEEEEccccccccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHccccccEEEccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEcccHHHHHcccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHHHHHHHcccccccEEEEEEcccccEEEEEEEEcccEEEEEcccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccEEEc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEcccccccEEccHHHHHcccccEEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEcccccccccccccccHHHccccccEEEEccccccccccccHHHHcccccccEEEEEEEcccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEccccHHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHHcccccccEEEccccccccccHHHccccccEEEEcccccccccccHHHHHcccccHHEEEcccccccccccccccccEEEEEccccccccccccccccEEEEEccccccccccHHHcccccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHcccccEEEEEcccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHEccccccccccccccccccccEEEccccccHHcccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccHHHEEHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEc
Coil and Loop (DISEMBL)
MVTGQVIGLDLScswlhgsipsnsslfllpyletlnlgsndfnsslissgfGRLISLThlnlsnsyfsgqipSEISQLSKMLsldlskndevrieSPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLtgcnligpipaslanlpqltslslsynhfsghiPSFLSHLKQLYYLNLeqnnlvggipdsfvnltqlsFLDLSwnqltgrlpscLKGLRNLVTLRlsgnslngtipswlftvlpylevihlrdnrftgsipsTIFELVNLTSIrlssnnlsGHIELCMFARLKNLQYLYLSQnrlsvntkldanstfPKLLKLGlsacnisefpdflrSQDRLEWLQLSEnkiygripnwfwdigkdtlynlnlsdnfltdveqvplknlrfldlrsnllqgsvmvlpprliffsisnnkltgeipcsfctaapiefidlsnnslsgpipeclvDSITLIWLDLHlnsfngsipqisangsgLVNLIlndnqfegplpqslancsrLQVLNVAnnriddtfphWLAQLPELLVLILRSNkfygligntdarvifpklrildlsrneftgvlptRYFQNLKammrgsntsTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIdfssnrfegqipeVVGKLNLLKMLNFShnhltgripsslrnltvlesldlssnrlvgqiptqltsLNFLSKLNLshnqlegpipqgpqfntfqsdsyignlglcgfplsdkcsniddaqepaprdtwswfDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIRRQSTRIFLS
Flexible Loop (DISEMBL)
MVTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRIldlsrneftgVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGrprwlvrmverkrirrqstrifls
Low Complexity Region (SEG)
MVTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDysltnlssslsylhltGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHlkqlyylnleqnnlVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIRRQSTRIFLS
Disordered region (IsUnstruct)
****QVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI*****MLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL********QFNTFQSDSYIGNLGLCGFPLSDKCSNIDD*****PRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRI**********
Disordered Region (DISOPRED)
MVTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMR********VQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGF**************************KVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIRRQSTRIFLS
Disordered Region (DISEMBL)
MVTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIRRQSTRIFLS
Disordered Region (DISPRO)
**TGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKC***************SWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIRRQSTRIFLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIRRQSTRIFLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	816	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.909	0.876	0.357	1e-107
Q9FL28	1173	LRR receptor-like serine/	no	no	0.816	0.567	0.318	3e-69
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.835	0.544	0.314	2e-67
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.883	0.577	0.319	1e-65
Q9LP24	1120	Probable leucine-rich rep	no	no	0.802	0.584	0.323	7e-65
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.649	0.507	0.327	2e-62
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.844	0.590	0.292	2e-59
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.799	0.591	0.320	3e-59
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.776	0.582	0.307	3e-58
O82318	960	Probably inactive leucine	no	no	0.726	0.617	0.305	1e-57

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 293/819 (35%), Positives = 422/819 (51%), Gaps = 77/819 (9%)

Query: 3   TGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNL 62
           +GQVI LD+  ++L+  + +NSSLF L YL  L+L + +     I S  G L  LT +NL
Sbjct: 83  SGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGE-IPSSLGNLSHLTLVNL 141

Query: 63  SNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTI 122
             + F G+IP+ I  L+++  L L+ N+ +  E P   G   NL++L  L L    +   
Sbjct: 142 YFNKFVGEIPASIGNLNQLRHLILA-NNVLTGEIPSSLG---NLSRLVNLELFSNRLVGK 197

Query: 123 VLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQ 182
           + D S+ +L   L  L L   NLIG IP+SL NL  L  L L++N   G +P+ + +L +
Sbjct: 198 IPD-SIGDLKQ-LRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIE 255

Query: 183 LYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
           L  ++ E N+L G IP SF NLT+LS   LS N  T   P  +    NL    +S NS +
Sbjct: 256 LRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFS 315

Query: 243 GTIPSWLFTVLPYLEVIHLRDNRFTGSIP-STIFELVNLTSIRLSSNNLSGHIELCMFAR 301
           G  P  L  ++P LE I+L++N+FTG I  +       L  + L  N L G I   + +R
Sbjct: 316 GPFPKSLL-LIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESI-SR 373

Query: 302 LKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSEN 361
           L NL+ L +S N  +                 G     IS+  + L        L LS+N
Sbjct: 374 LLNLEELDISHNNFT-----------------GAIPPTISKLVNLLH-------LDLSKN 409

Query: 362 KIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRL 421
            + G +P   W +    L + + S    T  E+  ++ L   DL SN  QG         
Sbjct: 410 NLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEEL---DLNSNSFQGP-------- 458

Query: 422 IFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVD-SITLIWLDLHLNSFN 480
                        IP   C  + + F+DLSNN  SG IP C+ + S ++  L+L  N+F+
Sbjct: 459 -------------IPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFS 505

Query: 481 GSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPE 540
           G++P I +  + LV+L ++ NQ EG  P+SL NC  L+++NV +N+I D FP WL  LP 
Sbjct: 506 GTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPS 565

Query: 541 LLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTST 600
           L VL LRSNKFYG + +  A + F  LRI+D+S N F+G LP  YF N K M   +  + 
Sbjct: 566 LHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDM---TTLTE 622

Query: 601 VQVQYMHRFGRYYSAFF-----TLKGIDVEMN-ILSIFLVIDFSSNRFEGQIPEVVGKLN 654
              QYM  F RY  +++       KG+D+    I   F  IDFS N+  G IPE +G L 
Sbjct: 623 EMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLK 682

Query: 655 LLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714
            L++LN S N  T  IP  L NLT LE+LD+S N+L GQIP  L +L+FLS +N SHN L
Sbjct: 683 ELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLL 742

Query: 715 EGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNID--DAQEPAPRD----TWSWFDWK 768
           +GP+P+G QF   +  S++ N GL G  L D C +    +     P D      + F+W 
Sbjct: 743 QGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWV 800

Query: 769 VAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIR 807
            A + Y  G++ G  IG+  + +    W      RK+ +
Sbjct: 801 AAAIAYGPGVLCGLVIGHF-YTSHNHEWFTEKFGRKQHK 838

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  263 bits (673), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 250/786 (31%), Positives = 354/786 (45%), Gaps = 120/786 (15%)

Query: 3   TGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNL 62
           TG V+ + L    L G +  + ++  L YL+ L+L SN F    I +  G+L  L  L L
Sbjct: 71  TGHVVSVSLLEKQLEGVL--SPAIANLTYLQVLDLTSNSFTGK-IPAEIGKLTELNQLIL 127

Query: 63  SNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTI 122
             +YFSG IPS I +L  +  LDL +N+ +  + P      E + K   LVL       I
Sbjct: 128 YLNYFSGSIPSGIWELKNIFYLDL-RNNLLSGDVP------EEICKTSSLVL-------I 173

Query: 123 VLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQ 182
             DY+                NL G IP  L +L  L     + NH +G IP  +  L  
Sbjct: 174 GFDYN----------------NLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLAN 217

Query: 183 LYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
           L  L+L  N L G IP  F NL  L  L L+ N L G +P+ +    +LV L L  N L 
Sbjct: 218 LTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLT 277

Query: 243 GTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHI-ELCMFAR 301
           G IP+ L  ++  L+ + +  N+ T SIPS++F L  LT + LS N+L G I E   F  
Sbjct: 278 GKIPAELGNLV-QLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGF-- 334

Query: 302 LKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSEN 361
           L++L+ L L  N  +                         EFP  + +   L  L +  N
Sbjct: 335 LESLEVLTLHSNNFT------------------------GEFPQSITNLRNLTVLTVGFN 370

Query: 362 KIYGRIPNWFWDIGKDT-LYNLNLSDNFLTDVEQVPLKN---LRFLDLRSNLLQGSVMVL 417
            I G +P    D+G  T L NL+  DN LT      + N   L+ LDL  N + G +   
Sbjct: 371 NISGELP---ADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEI--- 424

Query: 418 PPR------LIFFSISNNKLTGEIPCSFCTAAPIE------------------------F 447
            PR      L F SI  N  TGEIP      + +E                         
Sbjct: 425 -PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRI 483

Query: 448 IDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPL 507
           + +S NSL+GPIP  + +   L  L LH N F G IP+  +N + L  L +  N  EGP+
Sbjct: 484 LQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPI 543

Query: 508 PQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKL 567
           P+ + +   L VL+++NN+     P   ++L  L  L L+ NKF G I  +   +    L
Sbjct: 544 PEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSL--L 601

Query: 568 RILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMN 627
              D+S N  TG +P     +LK M    N S   +       +       ++ ID+  N
Sbjct: 602 NTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLL--TGTIPKELGKLEMVQEIDLSNN 659

Query: 628 ILS------------IFLVIDFSSNRFEGQIP-EVVGKLNLLKMLNFSHNHLTGRIPSSL 674
           + S            +F  +DFS N   G IP EV   ++++  LN S N  +G IP S 
Sbjct: 660 LFSGSIPRSLQACKNVF-TLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSF 718

Query: 675 RNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIG 734
            N+T L SLDLSSN L G+IP  L +L+ L  L L+ N L+G +P+   F    +   +G
Sbjct: 719 GNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMG 778

Query: 735 NLGLCG 740
           N  LCG
Sbjct: 779 NTDLCG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  258 bits (658), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 243/773 (31%), Positives = 372/773 (48%), Gaps = 91/773 (11%)

Query: 16  LHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI 75
           L G IPS   L  L  L++L LG N+ N + I   FG L++L  L L++   +G IPS  
Sbjct: 132 LSGDIPS--QLGSLVNLKSLKLGDNELNGT-IPETFGNLVNLQMLALASCRLTGLIPSRF 188

Query: 76  SQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSL 135
            +L ++ +L L  N+   +E P+    I N T                   SL   +++ 
Sbjct: 189 GRLVQLQTLILQDNE---LEGPI-PAEIGNCT-------------------SLALFAAAF 225

Query: 136 SYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVG 195
           + L+       G +PA L  L  L +L+L  N FSG IPS L  L  + YLNL  N L G
Sbjct: 226 NRLN-------GSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQG 278

Query: 196 GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
            IP     L  L  LDLS N LTG +      +  L  L L+ N L+G++P  + +    
Sbjct: 279 LIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTS 338

Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           L+ + L + + +G IP+ I    +L  + LS+N L+G I   +F +L  L  LYL+ N L
Sbjct: 339 LKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLF-QLVELTNLYLNNNSL 397

Query: 316 SVNTKLDANSTFPKLLKLGLSACNIS-EFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDI 374
              T   + S    L +  L   N+  + P  +    +LE + L EN+  G +P    +I
Sbjct: 398 E-GTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMP---VEI 453

Query: 375 GKDT-LYNLNLSDNFLTDVEQVP-----LKNLRFLDLRSNLLQGSV---MVLPPRLIFFS 425
           G  T L  ++   N L+   ++P     LK+L  L LR N L G++   +    ++    
Sbjct: 454 GNCTRLQEIDWYGNRLSG--EIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVID 511

Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQ 485
           +++N+L+G IP SF     +E   + NNSL G +P+ L++   L  ++   N FNGSI  
Sbjct: 512 LADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISP 571

Query: 486 ISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLI 545
           +  + S L +  + +N FEG +P  L   + L  L +  N+     P    ++ EL +L 
Sbjct: 572 LCGSSSYL-SFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLD 630

Query: 546 LRSNKFYGLI----------------GNTDARVI------FPKLRILDLSRNEFTGVLPT 583
           +  N   G+I                 N  + VI       P L  L LS N+F G LPT
Sbjct: 631 ISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPT 690

Query: 584 RYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMN-----------ILSIF 632
             F     +    + +++        G   +    L  +++E N            LS  
Sbjct: 691 EIFSLTNILTLFLDGNSLNGSIPQEIGNLQA----LNALNLEENQLSGPLPSTIGKLSKL 746

Query: 633 LVIDFSSNRFEGQIPEVVGKL-NLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV 691
             +  S N   G+IP  +G+L +L   L+ S+N+ TGRIPS++  L  LESLDLS N+LV
Sbjct: 747 FELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLV 806

Query: 692 GQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLS 744
           G++P Q+  +  L  LNLS+N LEG + +  QF+ +Q+D+++GN GLCG PLS
Sbjct: 807 GEVPGQIGDMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGSPLS 857

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  252 bits (643), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 252/789 (31%), Positives = 377/789 (47%), Gaps = 68/789 (8%)

Query: 6   VIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNS 65
           +I LDLS + L G IP+  +L  L  LE+L L SN      I S  G L+++  L + ++
Sbjct: 97  LIHLDLSSNNLVGPIPT--ALSNLTSLESLFLFSNQLTGE-IPSQLGSLVNIRSLRIGDN 153

Query: 66  YFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLD 125
              G IP  +  L  +  L L+     R+  P+   L   L +++ L+L +  +   +  
Sbjct: 154 ELVGDIPETLGNLVNLQMLALAS---CRLTGPIPSQL-GRLVRVQSLILQDNYLEGPI-P 208

Query: 126 YSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYY 185
             L N  S L+        L G IPA L  L  L  L+L+ N  +G IPS L  + QL Y
Sbjct: 209 AELGN-CSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQY 267

Query: 186 LNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTI 245
           L+L  N L G IP S  +L  L  LDLS N LTG +P     +  L+ L L+ N L+G++
Sbjct: 268 LSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSL 327

Query: 246 PSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNL 305
           P  + +    LE + L   + +G IP  + +  +L  + LS+N+L+G I   +F  L  L
Sbjct: 328 PKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALF-ELVEL 386

Query: 306 QYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNIS-EFPDFLRSQDRLEWLQLSENKIY 364
             LYL  N L   T   + S    L  L L   N+  + P  + +  +LE L L EN+  
Sbjct: 387 TDLYLHNNTLE-GTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFS 445

Query: 365 GRIPNWFWDIGKDTLYNLNLSDNFLTDVE-QVP-----LKNLRFLDLRSNLLQGSVMVLP 418
           G IP    +IG  T  +L + D F    E ++P     LK L  L LR N L G    LP
Sbjct: 446 GEIPQ---EIGNCT--SLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGG---LP 497

Query: 419 P------RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWL 472
                  +L    +++N+L+G IP SF     +E + L NNSL G +P+ L+    L  +
Sbjct: 498 ASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRI 557

Query: 473 DLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFP 532
           +L  N  NG+I  +  + S L +  + +N FE  +P  L N   L  L +  N++    P
Sbjct: 558 NLSHNRLNGTIHPLCGSSSYL-SFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIP 616

Query: 533 HWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAM 592
             L ++ EL +L + SN   G I      V+  KL  +DL+ N  +G +P  +   L  +
Sbjct: 617 WTLGKIRELSLLDMSSNALTGTI--PLQLVLCKKLTHIDLNNNFLSGPIPP-WLGKLSQL 673

Query: 593 --MRGSNTSTVQVQYMHRFGRYYSAFFTLKG------IDVEMNILSIFLVIDFSSNRFEG 644
             ++ S+   V+      F        +L G      I  E+  L    V++   N+F G
Sbjct: 674 GELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSG 733

Query: 645 QIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLES-LDLSSNRLVGQIPTQLTSLNF 703
            +P+ +GKL+ L  L  S N LTG IP  +  L  L+S LDLS N   G IP+ + +L+ 
Sbjct: 734 SLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSK 793

Query: 704 LSKLNLSHNQLEGPIPQG----------------------PQFNTFQSDSYIGNLGLCGF 741
           L  L+LSHNQL G +P                         QF+ + +DS++GN GLCG 
Sbjct: 794 LETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSRWPADSFLGNTGLCGS 853

Query: 742 PLSDKCSNI 750
           PLS +C+ +
Sbjct: 854 PLS-RCNRV 861

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  249 bits (636), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 237/733 (32%), Positives = 342/733 (46%), Gaps = 78/733 (10%)

Query: 73  SEISQLSKMLSLDLSKNDEVRIESPVWKGLIEN-LTKLKELVLSEVDMSTIVLDYSLTNL 131
           S  +  SK+ S     N         W G+  N    ++EL L+   +     D+   +L
Sbjct: 42  STFTNSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGTFQDFPFISL 101

Query: 132 SSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQN 191
           S+ L+Y+ L+   L G IP    NL +L    LS NH +G I   L +LK L  L L QN
Sbjct: 102 SN-LAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQN 160

Query: 192 NLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFT 251
            L   IP    N+  ++ L LS N+LTG +PS L  L+NL+ L L  N L G IP  L  
Sbjct: 161 YLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGN 220

Query: 252 VLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLS 311
            +  +  + L  N+ TGSIPST+  L NL  + L  N L+G I       ++++  L LS
Sbjct: 221 -MESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIP-PEIGNMESMTNLALS 278

Query: 312 QNRL--SVNTKLD--ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRI 367
           QN+L  S+ + L    N T   L +  L+       P  L + + +  L+LS NK+ G I
Sbjct: 279 QNKLTGSIPSSLGNLKNLTLLSLFQNYLTGG----IPPKLGNIESMIDLELSNNKLTGSI 334

Query: 368 PNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRF---LDLRSNLLQGSV---------- 414
           P+   ++   T+  L L +N+LT V    L N+     L L +N L GS+          
Sbjct: 335 PSSLGNLKNLTI--LYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNL 392

Query: 415 -----------MVLPPRL------IFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSG 457
                       V+P  L      I   +S NKLTG +P SF     +E + L  N LSG
Sbjct: 393 TYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSG 452

Query: 458 PIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRL 517
            IP  + +S  L  L L  N+F G  P+    G  L N+ L+ N  EGP+P+SL +C  L
Sbjct: 453 AIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSL 512

Query: 518 QVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEF 577
                  N+            P+L  +    NKF+G I +   +   PKL  L +S N  
Sbjct: 513 IRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKS--PKLGALIMSNNNI 570

Query: 578 TGVLPTRYF------------QNL-----KAMMRGSNTSTVQVQYMHRFGRYYS--AFFT 618
           TG +PT  +             NL     +A+   +N S +++      GR  +  +F T
Sbjct: 571 TGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLT 630

Query: 619 -LKGIDVEMNILSIFLVIDFSS-----------NRFEGQIPEVVGKLNLLKMLNFSHNHL 666
            L+ +D+  N  S  +   F S           N+F+G IP  + KL  L  L+ SHN L
Sbjct: 631 NLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQLDLSHNQL 689

Query: 667 TGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNT 726
            G IPS L +L  L+ LDLS N L G IPT    +  L+ +++S+N+LEGP+P  P F  
Sbjct: 690 DGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRK 749

Query: 727 FQSDSYIGNLGLC 739
             +D+   N+GLC
Sbjct: 750 ATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  241 bits (614), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 206/629 (32%), Positives = 280/629 (44%), Gaps = 99/629 (15%)

Query: 153 LANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL 212
            ++LP LT + LS N FSG I        +L Y +L  N LVG IP    +L+ L  L L
Sbjct: 114 FSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHL 173

Query: 213 SWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPS 272
             N+L G +PS +  L  +  + +  N L G IPS  F  L  L  ++L  N  +GSIPS
Sbjct: 174 VENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSS-FGNLTKLVNLYLFINSLSGSIPS 232

Query: 273 TIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK 332
            I  L NL  + L  NNL+G I    F  LKN+  L + +N+LS                
Sbjct: 233 EIGNLPNLRELCLDRNNLTGKIP-SSFGNLKNVTLLNMFENQLS---------------- 275

Query: 333 LGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDV 392
                    E P  + +   L+ L L  NK+ G IP+   +I                  
Sbjct: 276 --------GEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNI------------------ 309

Query: 393 EQVPLKNLRFLDLRSNLLQGSVMVLPPRL------IFFSISNNKLTGEIPCSFCTAAPIE 446
                K L  L L  N L GS+   PP L      I   IS NKLTG +P SF     +E
Sbjct: 310 -----KTLAVLHLYLNQLNGSI---PPELGEMESMIDLEISENKLTGPVPDSFGKLTALE 361

Query: 447 FIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGP 506
           ++ L +N LSGPIP  + +S  L  L L  N+F G +P     G  L NL L+DN FEGP
Sbjct: 362 WLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGP 421

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYG------------- 553
           +P+SL +C  L  +    N             P L  + L +N F+G             
Sbjct: 422 VPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLV 481

Query: 554 ---LIGNTDARVIFP------KLRILDLSRNEFTGVLPTRYFQNL----KAMMRGSNTST 600
              L  N+    I P      +L  LDLS N  TG LP     N+    K  + G+  S 
Sbjct: 482 AFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELP-ESISNINRISKLQLNGNRLSG 540

Query: 601 ---------VQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVG 651
                      ++Y+      +S+      I   +N L     ++ S N  +  IPE + 
Sbjct: 541 KIPSGIRLLTNLEYLDLSSNRFSS-----EIPPTLNNLPRLYYMNLSRNDLDQTIPEGLT 595

Query: 652 KLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSH 711
           KL+ L+ML+ S+N L G I S  R+L  LE LDLS N L GQIP     +  L+ +++SH
Sbjct: 596 KLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSH 655

Query: 712 NQLEGPIPQGPQFNTFQSDSYIGNLGLCG 740
           N L+GPIP    F     D++ GN  LCG
Sbjct: 656 NNLQGPIPDNAAFRNAPPDAFEGNKDLCG 684

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  231 bits (589), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 249/851 (29%), Positives = 374/851 (43%), Gaps = 162/851 (19%)

Query: 4   GQVIGLDLSCSWLHG--------SIPSNSSLFL--------------LPYLETLNLGSND 41
           G+++GLDL  S L G        ++P+  +L+L                YL+ L+L SN 
Sbjct: 77  GRIVGLDLRNSGLTGTLNLVNLTALPNLQNLYLQGNYFSSGGDSSGSDCYLQVLDLSSNS 136

Query: 42  FNS-SLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWK 100
            +  S++   F +  +L  +N+SN+   G++    S L  + ++DLS N           
Sbjct: 137 ISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTVDLSYN----------- 185

Query: 101 GLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLT 160
            ++ +  K+ E  +S+   S   LD +  NLS   S L    C               LT
Sbjct: 186 -ILSD--KIPESFISDFPASLKYLDLTHNNLSGDFSDLSFGICG-------------NLT 229

Query: 161 SLSLSYNHFSG-HIPSFLSHLKQLYYLNLEQNNLVGGIPD-----SFVNLTQLSFLDLSW 214
             SLS N+ SG   P  L + K L  LN+ +NNL G IP+     SF NL QLS   L+ 
Sbjct: 230 FFSLSQNNLSGDKFPITLPNCKFLETLNISRNNLAGKIPNGEYWGSFQNLKQLS---LAH 286

Query: 215 NQLTGRLPSCLKGL-RNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPST 273
           N+L+G +P  L  L + LV L LSGN+ +G +PS  FT   +L+ ++L +N  +G   +T
Sbjct: 287 NRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQ-FTACVWLQNLNLGNNYLSGDFLNT 345

Query: 274 IF-ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK 332
           +  ++  +T + ++ NN+SG + + +     NL+ L LS N  + N      S F     
Sbjct: 346 VVSKITGITYLYVAYNNISGSVPISL-TNCSNLRVLDLSSNGFTGNVP----SGF----- 395

Query: 333 LGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDV 392
                C+       L+S   LE + ++ N + G +P    ++GK                
Sbjct: 396 -----CS-------LQSSPVLEKILIANNYLSGTVP---MELGK---------------- 424

Query: 393 EQVPLKNLRFLDLRSNLLQGSV---MVLPPRLIFFSISNNKLTGEIPCSFCT-AAPIEFI 448
                K+L+ +DL  N L G +   + + P L    +  N LTG IP   C     +E +
Sbjct: 425 ----CKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETL 480

Query: 449 DLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLP 508
            L+NN L+G IPE +     +IW+ L  N   G IP    N S L  L L +N   G +P
Sbjct: 481 ILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVP 540

Query: 509 QSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI---GNTDAR---- 561
           + L NC  L  L++ +N +    P  LA    L++    S K +  +   G TD R    
Sbjct: 541 RQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGG 600

Query: 562 -VIFPKLRILDLSRNEFTGVLP-TRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTL 619
            V F  +R   L R       P TR +  +      +N S +          Y+      
Sbjct: 601 LVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMI----------YF------ 644

Query: 620 KGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTV 679
                           D S N   G IP   G +  L++LN  HN +TG IP S   L  
Sbjct: 645 ----------------DISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKA 688

Query: 680 LESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLC 739
           +  LDLS N L G +P  L SL+FLS L++S+N L GPIP G Q  TF    Y  N GLC
Sbjct: 689 IGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLC 748

Query: 740 GFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFAT-GRPRWLV 798
           G PL   C +       APR   +           A+ ++ G +  +M F       + V
Sbjct: 749 GVPLR-PCGS-------APRRPIT-SRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRV 799

Query: 799 RMVERKRIRRQ 809
           R V++K  +R+
Sbjct: 800 RKVQKKEQKRE 810

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  230 bits (587), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 237/740 (32%), Positives = 341/740 (46%), Gaps = 88/740 (11%)

Query: 13  CSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIP 72
           C W  G + SN S    P + +LNL S   +  L S   G L+ L  L+LS +  SG+IP
Sbjct: 59  CGW-TGVMCSNYSSD--PEVLSLNLSSMVLSGKL-SPSIGGLVHLKQLDLSYNGLSGKIP 114

Query: 73  SEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLS 132
            EI   S +  L L+ N++   E PV  G    L  L+ L++    +S   L   + NL 
Sbjct: 115 KEIGNCSSLEILKLN-NNQFDGEIPVEIG---KLVSLENLIIYNNRISG-SLPVEIGNLL 169

Query: 133 SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNN 192
           S LS L     N+ G +P S+ NL +LTS     N  SG +PS +   + L  L L QN 
Sbjct: 170 S-LSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQ 228

Query: 193 LVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTV 252
           L G +P     L +LS + L  N+ +G +P  +    +L TL L  N L G IP  L   
Sbjct: 229 LSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGD- 287

Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
           L  LE ++L  N   G+IP  I  L     I  S N L+G I L     ++ L+ LYL +
Sbjct: 288 LQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPL-ELGNIEGLELLYLFE 346

Query: 313 NRLSVNTKLDANSTFPKLLKLGLSACNIS-EFPDFLRSQDRLEWLQLSENKIYGRIP--- 368
           N+L+    ++  ST   L KL LS   ++   P   +    L  LQL +N + G IP   
Sbjct: 347 NQLTGTIPVEL-STLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKL 405

Query: 369 NWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISN 428
            W+ D     L+ L++SDN L+   ++P     +L L SN+            I  ++  
Sbjct: 406 GWYSD-----LWVLDMSDNHLSG--RIP----SYLCLHSNM------------IILNLGT 442

Query: 429 NKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISA 488
           N L+G IP    T   +  + L+ N+L G  P  L   + +  ++L  N F GSIP+   
Sbjct: 443 NNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVG 502

Query: 489 NGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRS 548
           N S L  L L DN F G LP+ +   S+L  LN+++N++    P  +     L  L +  
Sbjct: 503 NCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCC 562

Query: 549 NKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHR 608
           N F G + +    +   +L +L LS N  +G +P                          
Sbjct: 563 NNFSGTLPSEVGSLY--QLELLKLSNNNLSGTIP-------------------------- 594

Query: 609 FGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKM-LNFSHNHLT 667
                          V +  LS    +    N F G IP  +G L  L++ LN S+N LT
Sbjct: 595 ---------------VALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLT 639

Query: 668 GRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTF 727
           G IP  L NL +LE L L++N L G+IP+   +L+ L   N S+N L GPI   P     
Sbjct: 640 GEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPI---PLLRNI 696

Query: 728 QSDSYIGNLGLCGFPLSDKC 747
              S+IGN GLCG PL ++C
Sbjct: 697 SMSSFIGNEGLCGPPL-NQC 715

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  227 bits (578), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 231/752 (30%), Positives = 343/752 (45%), Gaps = 118/752 (15%)

Query: 60  LNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDM 119
           LNLS S  SGQ+ SEI +L  +++LDLS N      S +    + N T L+ L LS  D 
Sbjct: 81  LNLSASGLSGQLGSEIGELKSLVTLDLSLNSF----SGLLPSTLGNCTSLEYLDLSNNDF 136

Query: 120 STIVLDY--SLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFL 177
           S  V D   SL NL+    +L+L   NL G IPAS+  L +L  L +SYN+ SG IP  L
Sbjct: 137 SGEVPDIFGSLQNLT----FLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELL 192

Query: 178 SHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLS 237
            +  +L YL L  N L G +P S   L  L  L +S N L GRL       + LV+L LS
Sbjct: 193 GNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLS 252

Query: 238 GNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELC 297
            N   G +P  +        ++ ++ N  TG+IPS++  L  ++ I LS N LSG+I   
Sbjct: 253 FNDFQGGVPPEIGNCSSLHSLVMVKCN-LTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQ- 310

Query: 298 MFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQ 357
                 +L+ L L+ N+L                          E P  L    +L+ L+
Sbjct: 311 ELGNCSSLETLKLNDNQLQ------------------------GEIPPALSKLKKLQSLE 346

Query: 358 LSENKIYGRIPNWFWDIGKDT---LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSV 414
           L  NK+ G IP   W I   T   +YN  L+     +V Q  LK+L+ L L +N   G +
Sbjct: 347 LFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQ--LKHLKKLTLFNNGFYGDI 404

Query: 415 MV---------------------LPP------RLIFFSISNNKLTGEIPCSFCTAAPIEF 447
            +                     +PP      +L  F + +N+L G+IP S      +E 
Sbjct: 405 PMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLER 464

Query: 448 IDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPL 507
           + L +N LSG +PE   +S++L +++L  NSF GSIP+   +   L+ + L+ N+  G +
Sbjct: 465 VRLEDNKLSGVLPE-FPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLI 523

Query: 508 PQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKL 567
           P  L N   L +LN+++N ++   P  L+    LL   + SN   G I ++     +  L
Sbjct: 524 PPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRS--WKSL 581

Query: 568 RILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMN 627
             L LS N F G +P                     Q++    R                
Sbjct: 582 STLVLSDNNFLGAIP---------------------QFLAELDRLSD------------- 607

Query: 628 ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKM-LNFSHNHLTGRIPSSLRNLTVLESLDLS 686
                  +  + N F G+IP  VG L  L+  L+ S N  TG IP++L  L  LE L++S
Sbjct: 608 -------LRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNIS 660

Query: 687 SNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDK 746
           +N+L G + + L SL  L+++++S+NQ  GPIP     N   S  + GN  LC    S  
Sbjct: 661 NNKLTGPL-SVLQSLKSLNQVDVSYNQFTGPIPVNLLSN---SSKFSGNPDLC-IQASYS 715

Query: 747 CSNIDDAQEPAPRDTWSWFDWKVAMMGYASGL 778
            S I   +  + +       WK+A++   S L
Sbjct: 716 VSAIIRKEFKSCKGQVKLSTWKIALIAAGSSL 747

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  225 bits (574), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 211/691 (30%), Positives = 311/691 (45%), Gaps = 98/691 (14%)

Query: 138 LHLTGCNLIGPI-PASLANLPQLTSLSLSYNHFSGHIPS--FLSHLKQLYYLNLEQNNLV 194
           L L+G N+ G I  A+   LP L +++LS N+ SG IP   F +    L YLNL  NN  
Sbjct: 77  LDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFS 136

Query: 195 GGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP 254
           G IP  F  L  L  LDLS N  TG + + +    NL  L L GN L G +P +L   L 
Sbjct: 137 GSIPRGF--LPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGN-LS 193

Query: 255 YLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNR 314
            LE + L  N+ TG +P  + ++ NL  I L  NNLSG I       L +L +L L  N 
Sbjct: 194 RLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPY-QIGGLSSLNHLDLVYNN 252

Query: 315 LSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDI 374
           LS                           P  L    +LE++ L +NK+ G+IP   + +
Sbjct: 253 LS------------------------GPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSL 288

Query: 375 GKDTLYNLNLSDNFLTDVEQVP-----LKNLRFLDLRSNLLQGSV---MVLPPRLIFFSI 426
               L +L+ SDN L+   ++P     +++L  L L SN L G +   +   PRL    +
Sbjct: 289 --QNLISLDFSDNSLSG--EIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQL 344

Query: 427 SNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQI 486
            +N+ +G IP +      +  +DLS N+L+G +P+ L DS  L  L L  NS +  IP  
Sbjct: 345 WSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPS 404

Query: 487 SANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLIL 546
                 L  + L +N F G LP+       +  L+++NN +      W   +P+L +L L
Sbjct: 405 LGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLSNNNLQGNINTW--DMPQLEMLDL 462

Query: 547 RSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYM 606
             NKF+G + +        +L+ LDLSRN+ +GV+P                     Q +
Sbjct: 463 SVNKFFGELPDFSRS---KRLKKLDLSRNKISGVVP---------------------QGL 498

Query: 607 HRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHL 666
             F                       + +D S N   G IP  +     L  L+ SHN+ 
Sbjct: 499 MTFPE--------------------IMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNF 538

Query: 667 TGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNT 726
           TG IPSS     VL  LDLS N+L G+IP  L ++  L ++N+SHN L G +P    F  
Sbjct: 539 TGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLA 598

Query: 727 FQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVI---GFS 783
             + +  GN+ LC     +  S +   +    R T SW  W +    +A+ L +   GF 
Sbjct: 599 INATAVEGNIDLCS---ENSASGLRPCKVVRKRSTKSW--WLIITSTFAAFLAVLVSGFF 653

Query: 784 IGYMAFATGRPRWLVRMVERKRIRRQSTRIF 814
           I  + F        V+ VE++   +  T+ F
Sbjct: 654 I-VLVFQRTHNVLEVKKVEQEDGTKWETQFF 683

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	816
225462116	1001	PREDICTED: receptor-like protein 12-like	0.960	0.783	0.454	0.0
359485824	973	PREDICTED: receptor-like protein 12-like	0.985	0.826	0.453	0.0
359493544	978	PREDICTED: receptor-like protein 12-like	0.954	0.796	0.443	1e-178
359493479	814	PREDICTED: receptor-like protein 12-like	0.909	0.911	0.468	1e-177
225455498	980	PREDICTED: receptor-like protein 12-like	0.950	0.791	0.435	1e-177
224116970	921	predicted protein [Populus trichocarpa]	0.828	0.733	0.515	1e-174
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.990	0.804	0.432	1e-173
255568090	1014	serine/threonine-protein kinase bri1, pu	0.980	0.788	0.435	1e-172
225459979	979	PREDICTED: receptor-like protein 12-like	0.957	0.797	0.434	1e-171
147793123	951	hypothetical protein VITISV_032542 [Viti	0.927	0.796	0.436	1e-170

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/926 (45%), Positives = 542/926 (58%), Gaps = 142/926 (15%)

Query: 2   VTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
           VTG +IGLDLSCS L+G+I SNSSLFLLP+L  LNL  NDFN S IS+ FG+   +THLN
Sbjct: 83  VTGLIIGLDLSCSGLYGTIDSNSSLFLLPHLRRLNLAFNDFNKSSISAKFGQFRRMTHLN 142

Query: 62  LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
           LS S FSG I  EIS LS ++SLDLS    + +E+  +  L  NLTKL++L L  +++S+
Sbjct: 143 LSFSGFSGVIAPEISHLSNLVSLDLSIYSGLGLETSSFIALARNLTKLQKLHLRGINVSS 202

Query: 122 IVL--------------------------DYSLTNL--------------------SSSL 135
           I+                           D  L NL                    S+S+
Sbjct: 203 ILPISLLNLSSLRSMDLSSCQLYGRFPDDDLQLPNLKVLKLKGNHDLSGNFPKFNESNSM 262

Query: 136 SYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVG 195
             L L+  N  G +P+S+  L  L SL LS   FSG +PS +  LK L  L+L   N  G
Sbjct: 263 LLLDLSSTNFSGELPSSIGILKSLESLDLSSTKFSGELPSSIGSLKSLESLDLSHCNFSG 322

Query: 196 GIPD------------------------------------------------SFVNLTQL 207
            IP                                                 S  NLT+L
Sbjct: 323 SIPSVLGNLTQITHLDLSRNQFDGEISNVFNKIRKLIVLDLSSNSFRGQFIASLDNLTEL 382

Query: 208 SFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTV--------------- 252
           SFLDLS N L G +PS +K L +L  + LS N LNGTIPSWLF++               
Sbjct: 383 SFLDLSNNNLEGIIPSHVKELSSLSDIHLSNNLLNGTIPSWLFSLPSLIRLDLSHNKLNG 442

Query: 253 ------LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQ 306
                  P LE I L  N   G +PS+IFELVNLT ++LSSNNL G +E  MF  L+NL 
Sbjct: 443 HIDEFQSPSLESIDLSSNELDGPVPSSIFELVNLTYLQLSSNNLGGIVETDMFMNLENLV 502

Query: 307 YLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGR 366
           YL LS N L+++    +N   P L  L LS+CNISEFP FL SQ+ LE+L LS NKIYG+
Sbjct: 503 YLDLSYNILTLSNYSHSNCALPFLETLLLSSCNISEFPRFLCSQEVLEFLDLSNNKIYGQ 562

Query: 367 IPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSI 426
           +P W W++G +TL   NLS N LT  E+ P KN+ FLDL SNLLQG +    P LI    
Sbjct: 563 LPKWAWNMGTETLSYFNLSQNLLTRFERFPWKNMLFLDLHSNLLQGPL----PSLI---- 614

Query: 427 SNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVD-SITLIWLDLHLNSFNGSIPQ 485
                        C  + I  +D SNN+LSG IP+CL + S +L  LDL +N  +G+IP+
Sbjct: 615 -------------CEMSYISVLDFSNNNLSGLIPQCLGNFSESLSVLDLRMNQLHGNIPE 661

Query: 486 ISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLI 545
             + G+ + NL  N NQ EGPLP+SL NC RLQVL++ NNRI+DTFP+WL  LPEL VLI
Sbjct: 662 TFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYWLETLPELQVLI 721

Query: 546 LRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQY 605
           LRSN+F+G I  ++ +  FPKLRI+DLSRN+F+G LP  Y +N KAMM  +    ++++Y
Sbjct: 722 LRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMNVTE-DKMKLKY 780

Query: 606 MHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNH 665
           M  +    S   T+KG D E  ILS F  ID SSNRF+G+I + +G L+ L+ LN SHN+
Sbjct: 781 MGEYYYRDSIMGTIKGFDFEFVILSTFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNN 840

Query: 666 LTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFN 725
           LTG IPSSL NL VLESLDLSSN+L G+IP +LTSL FL  LNLS N L G IP+G QF+
Sbjct: 841 LTGHIPSSLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFD 900

Query: 726 TFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAPR---DTWSWFDWKVAMMGYASGLVIGF 782
           TF ++SY GN+GLCG PLS KC  +D+A +P      ++ + FDWKV +MGY  GLV+G 
Sbjct: 901 TFANNSYSGNIGLCGLPLSKKCV-VDEAPQPPKEEEVESDTGFDWKVILMGYGCGLVVGL 959

Query: 783 SIGYMAFATGRPRWLVRMVERKRIRR 808
            +G + F T +P+W V M+E  R ++
Sbjct: 960 FMGCLVFLTRKPKWFVTMIEGDRHKK 985

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/876 (45%), Positives = 523/876 (59%), Gaps = 72/876 (8%)

Query: 3   TGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNL 62
           TG VIGL L+ S L+GSI S+S+LF L +L+ L+L  NDFN S I  G G+L  L  L+L
Sbjct: 95  TGHVIGLHLASSCLYGSINSSSTLFSLVHLQRLDLSDNDFNYSEIPFGVGQLSRLRSLDL 154

Query: 63  SNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTI 122
           S S FSGQIPSE+  LSK++ LDLS N +++++ P  + L++NLT LK+L LS+V++S+ 
Sbjct: 155 SFSGFSGQIPSELLALSKLVFLDLSANPKLQLQKPGLRNLVQNLTHLKKLHLSQVNISST 214

Query: 123 V---------------------------------LDYSLT--NL-----------SSSLS 136
           +                                 L Y     NL           +S L 
Sbjct: 215 IPYELASLSSLTSLFLGECGLHGEFPMKIFQLPSLQYLTVRDNLDLISYLPEFQETSPLK 274

Query: 137 YLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG 196
            L L G +  G +P S+  L  LT L +S  +F+G +PS L HL QLYYL+L  N+  G 
Sbjct: 275 MLDLAGTSFSGELPTSIGRLGSLTELDISSCNFTGSVPSSLGHLTQLYYLDLSNNHFSGQ 334

Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
           IP S  NLTQL +L LSWN       S L     L  L L+  +L G IP  L   +  L
Sbjct: 335 IPSSMANLTQLIYLSLSWNDFNVGTLSWLGQQTKLTYLYLNQINLIGEIPFSLVN-MSQL 393

Query: 257 EVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
            ++ L DN+ +G IPS++FELVNL  + L SN L+G +EL + ++LKNL YL LS NRLS
Sbjct: 394 NILSLSDNQLSGQIPSSLFELVNLQGLYLLSNYLNGTVELQLLSKLKNLIYLQLSDNRLS 453

Query: 317 VNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK 376
             +    N+T PK   LGL +CN++EFPDFL++Q  LE + LSENKI+G IP W W+I K
Sbjct: 454 FLSYTRTNATLPKFKHLGLGSCNLTEFPDFLQNQHELEIITLSENKIHGPIPKWVWNISK 513

Query: 377 DTLYNLNLSDNFLTDVEQ----VPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLT 432
           +TL  L LS+NFLT  +Q    +P   L  L L SN+LQG + V PP  + + +S NKLT
Sbjct: 514 ETLVTLELSENFLTGFDQRPFVLPWSKLHTLRLDSNMLQGPLPVPPPSTVEYLVSGNKLT 573

Query: 433 GEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVD-SITLIWLDLHLNSFNGSIPQISANGS 491
           GEI    C    +E +DLS+N+LSG IP+CL + S +L  LDL  NS +G IP+I     
Sbjct: 574 GEISPLICNMTSLELLDLSSNNLSGRIPQCLANFSRSLFVLDLGSNSLDGPIPEICTVSH 633

Query: 492 GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
            L  + L DNQF+G +P+SL NC+ L+ L + NN+I+D FP WL  LP+L VLILRSN+F
Sbjct: 634 NLNVIDLGDNQFQGQIPRSLVNCTMLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRF 693

Query: 552 YGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMR---GSNTSTVQVQYMHR 608
           +G IG+      FPKLRI+DLS NEF G LP+ YFQN  AM      S    +Q+  M  
Sbjct: 694 HGAIGSWHTNFRFPKLRIIDLSDNEFIGDLPSEYFQNWDAMKLTDIASGLRYMQISPMID 753

Query: 609 F-------GRYYSAFFTLKGID-VEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLN 660
                   G  YS   T KG+      IL  F+ IDFS N F+GQIP  +G L  + +LN
Sbjct: 754 LKNNVMITGYMYSMTMTNKGMQRFYERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLN 813

Query: 661 FSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ 720
              N LTG IPSSL NLT LESLDLS N+L G+IP QLT L FL   N+SHN L G IPQ
Sbjct: 814 LGGNDLTGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQ 873

Query: 721 GPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEP----APRDTWSWFDWKVAMMGYAS 776
           G QF TF++ S+ GNLGLCG PLS +C +  +A  P    + + + + FDWK+ +MGY S
Sbjct: 874 GKQFATFENASFDGNLGLCGSPLSRECGS-SEALPPTSSSSKQGSTTKFDWKIVLMGYGS 932

Query: 777 GLVIGFSIGYMAFATGRPRWLVRMV---ERKRIRRQ 809
           GL+IG SIGY    + +  W V+ +   +RK  R++
Sbjct: 933 GLLIGVSIGY-CLTSWKHEWFVKTIGKRQRKWTRKE 967

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 404/910 (44%), Positives = 527/910 (57%), Gaps = 131/910 (14%)

Query: 2   VTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
           VTG +IGLDLSCSWL G I SNS+LFL P+L  LNL SNDF+ S +S GFGR  SLTHLN
Sbjct: 88  VTGHIIGLDLSCSWLFGIIHSNSTLFLFPHLRRLNLASNDFSGSSVSVGFGRFSSLTHLN 147

Query: 62  LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
           LS+S FSG I SEIS LS ++SLDLS N +       +  L++NLTKL++L L  + +S+
Sbjct: 148 LSDSGFSGLISSEISHLSNLVSLDLSWNSDAEFAPHGFNSLVQNLTKLQKLHLRGISISS 207

Query: 122 I------------------------------------VLDYSLTN----------LSSSL 135
           +                                    VLD    N           ++SL
Sbjct: 208 VFPDSLLNRSSLISLDLSSCGLHGRFPDHDIHFPKLEVLDLQGNNDLSGNFPRFSENNSL 267

Query: 136 SYLHLTGCNLIGPIPA------------------------SLANLPQLTSLSLSYNHFSG 171
             L+L+  N  G +PA                        SL NL Q+TSL+L  N FSG
Sbjct: 268 MELYLSSKNFSGELPASIGNLKSLQTLYISNCEFSGSIPASLENLTQITSLNLDENLFSG 327

Query: 172 HIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNL 231
            IP+  S+L+ L  L+L  NN  G +P S  NLT L  L+L  NQL G +PS + G  +L
Sbjct: 328 KIPNVFSNLRNLISLHLHGNNFSGQLPSSIGNLTNLQGLNLYDNQLEGVIPSFVNGFLSL 387

Query: 232 VTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS---------------------- 269
             + L  N  NG IPSWL+  LP L V++L  N+ TG                       
Sbjct: 388 SYVDLGYNLFNGIIPSWLY-ALPSLVVLYLDHNKLTGHIGEFQSDSLELICLKMNKLHGP 446

Query: 270 IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPK 329
           IPS+IF+LVNL  + LSSNNLSG +E   F +L+NL  L LS N LS  T  ++NS  P 
Sbjct: 447 IPSSIFKLVNLRYLHLSSNNLSGVLETSNFGKLRNLTSLDLSNNMLSSITSSNSNSILPS 506

Query: 330 LLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFL 389
           + +L  S  NIS                            W W++GK+TL  LNLS N +
Sbjct: 507 IQRLDFSNNNISGV--------------------------WSWNMGKNTLQYLNLSYNSI 540

Query: 390 TDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFID 449
           +  E +P +NL  LDL SNLLQG +  LP    FFS+S+NKL+GEI    C A+ +   D
Sbjct: 541 SGFEMLPWENLYTLDLHSNLLQGPLPTLPNSTFFFSVSHNKLSGEISSLICKASSMRIFD 600

Query: 450 LSNNSLSGPIPECLVD-SITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLP 508
           LSNN+LSG +P CL + S  L  L+L  N F+G IPQ    G+ + NL  NDNQ EGP+P
Sbjct: 601 LSNNNLSGVLPHCLGNFSKDLFVLNLRRNQFHGIIPQTFLKGNAIRNLDFNDNQLEGPVP 660

Query: 509 QSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLR 568
           +SL  C +L+VL++ NN+I+DTFPHWL  LPEL VL+LRSN F+G IG +  +  F  LR
Sbjct: 661 RSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGRSKIKSPFMSLR 720

Query: 569 ILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYY--SAFFTLKGIDVE- 625
           I+DL+ N+F G LP  Y ++LKA+M   +   +  +YM     YY  S   T+K +++E 
Sbjct: 721 IIDLAHNDFEGDLPEMYLRSLKAIMN-IDEGNMTRKYMGE--EYYQDSIVVTIKRLEIEF 777

Query: 626 MNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDL 685
           + IL+ F  ID SSN+F+G+IP+ +G LN L+ LN SHN+L G IPSS  NL +LESLDL
Sbjct: 778 VKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGNLKLLESLDL 837

Query: 686 SSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSD 745
           SSN+L+G+IP +LTSL FL  LNLS N L G IPQG QF+TF +DSY  N GLCGFPLS 
Sbjct: 838 SSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPQGNQFDTFGNDSYNENSGLCGFPLSK 897

Query: 746 KCSNIDDAQEPAPRDTWSW---FDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVE 802
           KC  ID+  E +      +   FDWK+ +MGY  GL+IG S+G + F TG+P+WL  MVE
Sbjct: 898 KCI-IDETPESSKETDAEFDGGFDWKITLMGYGCGLIIGLSLGCLIFLTGKPKWLTTMVE 956

Query: 803 RKRIRRQSTR 812
            + I ++ TR
Sbjct: 957 -ENIHKKITR 965

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493479|ref|XP_003634609.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 388/828 (46%), Positives = 505/828 (60%), Gaps = 86/828 (10%)

Query: 2   VTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
           VTG VIGLDLSCSWL+G+I SNS+LFL P+L  LNL  NDFN S IS+G     SL  L+
Sbjct: 26  VTGHVIGLDLSCSWLYGTIHSNSTLFLFPHLRRLNLAFNDFNGSSISAGENN--SLMELD 83

Query: 62  LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
           LSN+ FSG++P+ +  L  + +LDL  N ++    P                        
Sbjct: 84  LSNTNFSGELPASMGNLKFLQTLDL-HNCKLSRSIPT----------------------- 119

Query: 122 IVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLK 181
                S+ NL S L  L LT C   G IPASL NL Q+TSL L+ NHFSG+IP+  ++L+
Sbjct: 120 -----SIGNLKS-LQTLDLTFCEFSGSIPASLENLTQITSLYLNGNHFSGNIPNVFNNLR 173

Query: 182 QLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL 241
            L  L L  NN  G +P S  NLT L +LD+S NQL G + S + G  +L  + L  N  
Sbjct: 174 NLISLVLSSNNFSGQLPPSIGNLTNLKYLDISNNQLEGVIFSHVNGFSSLSFVNLGYNLF 233

Query: 242 NGTIPSWLFTV---------------------LPYLEVIHLRDNRFTGSIPSTIFELVNL 280
           NGTIPSWL+T+                     +  LE I+L  N+  GSIPS+IF+L+NL
Sbjct: 234 NGTIPSWLYTLPSLVSLSLSHNKLTGHIGEIQIASLEAINLSMNQLYGSIPSSIFKLINL 293

Query: 281 TSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNI 340
            S+ LSSNNLSG +E   F +L+NL +L LS N LS+ T   +NS  P ++ L       
Sbjct: 294 RSLYLSSNNLSGILETSTFVKLRNLAWLDLSNNMLSLTTSSSSNSILPNIVGL------- 346

Query: 341 SEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNL 400
                            LS NKI G+   W W++GKDTL +LNLS N ++  E +P K +
Sbjct: 347 ----------------DLSNNKISGK---WTWNMGKDTLKSLNLSYNLISGFELLPWKKI 387

Query: 401 RFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIP 460
           + LDLRSNLLQG +   P    FF+ISNNKL+GEI  S C    I  +DLSNN+LSG +P
Sbjct: 388 QILDLRSNLLQGPLPTPPYSTFFFAISNNKLSGEISPSICKVHSIGVLDLSNNNLSGRLP 447

Query: 461 ECLVD-SITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQV 519
            CL + S  L  L+L  N F+G+IPQ    G+ + NL  N NQ EG +P+SL  C  L+V
Sbjct: 448 HCLGNFSKDLSVLNLQGNRFHGTIPQTFLKGNVIRNLDFNGNQLEGLVPRSLIICRELEV 507

Query: 520 LNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTG 579
           L++ NN+I+DTFPHWL  LP+L VL+LRSN F+G IG +  +  F  LRI+DL+RN+F G
Sbjct: 508 LDLGNNKINDTFPHWLETLPKLQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLARNDFEG 567

Query: 580 VLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEM-NILSIFLVIDFS 638
            LP  Y ++LKA+M   +   +  +YM       S   T+KG+++E+  IL+ F  ID S
Sbjct: 568 DLPEMYLRSLKAIMN-VDEGKMTRKYMGDHYYQDSIMVTIKGLEIELVKILNTFTTIDLS 626

Query: 639 SNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQL 698
           SN+F+G+IPE +G LN L+ LN SHN+L G IPSS  NL +LESLDLSSN+L+G+IP +L
Sbjct: 627 SNKFQGEIPESIGNLNSLRELNLSHNNLVGHIPSSFGNLKLLESLDLSSNKLIGRIPQEL 686

Query: 699 TSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEP-- 756
           TSL FL  LNLS N L G IP+G QF TF +DSY GN GLCGFPLS KC+  D+  EP  
Sbjct: 687 TSLTFLEVLNLSQNHLTGFIPRGNQFETFGNDSYNGNSGLCGFPLSKKCT-TDETLEPSK 745

Query: 757 -APRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVER 803
            A  +  S FDWK+ +MGY  GLVIG S+G   F TG+P W VR++E 
Sbjct: 746 EADAEFESGFDWKITLMGYGCGLVIGLSLGCFIFLTGKPEWFVRIIEE 793

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 397/911 (43%), Positives = 530/911 (58%), Gaps = 135/911 (14%)

Query: 2   VTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
           VTG VI LDLSCSWL G+I SN++LFLLP+++ LNL  N+F+ S IS GFGR  SLTHLN
Sbjct: 88  VTGHVIELDLSCSWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHLN 147

Query: 62  LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
           LS+S FSG I  EIS LS ++SLDLS N +       +  L++NLTKL++L L  + +S+
Sbjct: 148 LSDSGFSGLISPEISHLSNLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGGISISS 207

Query: 122 IVLDYSLT----------------------------------------------NLSSSL 135
           +  +  L                                               N ++SL
Sbjct: 208 VFPNSLLNRSSLISLHLSSCGLHGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRFNENNSL 267

Query: 136 SYLHLTGCNLIGPIP------------------------ASLANLPQLTSLSLSYNHFSG 171
           + L+L+  N  G +P                        ASL NL Q+TSL+L+ NHFSG
Sbjct: 268 TELYLSSKNFSGELPASIGNLKSLQTLDLSNCEFSGSIPASLENLTQITSLNLNGNHFSG 327

Query: 172 HIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKG--LR 229
            IP+  ++L+ L  + L  N+  G  P S  NLT L +LD S+NQL G +PS +      
Sbjct: 328 KIPNIFNNLRNLISIGLSNNHFSGQFPPSIGNLTNLYYLDFSYNQLEGVIPSHVNEFLFS 387

Query: 230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS-------------------- 269
           +L  + L  N  NG IPSWL+T+L  L V+HL  N+ TG                     
Sbjct: 388 SLSYVYLGYNLFNGIIPSWLYTLLS-LVVLHLGHNKLTGHIGEFQFDSLEMIDLSMNELH 446

Query: 270 --IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTF 327
             IPS+IF+LVNL S+ LSSNNLSG +E   F +L+NL  LYLS N LS+ T  ++N   
Sbjct: 447 GPIPSSIFKLVNLRSLYLSSNNLSGVLETSNFGKLRNLINLYLSNNMLSLTTSSNSNCIL 506

Query: 328 PKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDN 387
           PK                       +E + LS NKI G    W W++GKDTL+ LNLS N
Sbjct: 507 PK-----------------------IESIDLSNNKISGV---WSWNMGKDTLWYLNLSYN 540

Query: 388 FLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEF 447
            ++  E +P KN+  LDL SNLLQG++   P    FFS+ +NKL+G I    C  + I  
Sbjct: 541 SISGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIRV 600

Query: 448 IDLSNNSLSGPIPECLVD-SITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGP 506
           +DLS+N+LSG +P CL + S  L  L+L  N F+G+IPQ    G+ + NL  NDN+ EG 
Sbjct: 601 LDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGL 660

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPK 566
           +P+SL  C +L+VLN+ NN+I+DTFPHWL  LPEL VL+LRSN F+G IG +  +  F  
Sbjct: 661 VPRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMS 720

Query: 567 LRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYY--SAFFTLKGIDV 624
           LRI+DL+ N+F G LP  Y ++LK  M   +   +  +YM   G YY  S   T+KG+++
Sbjct: 721 LRIIDLAHNDFEGDLPEMYLRSLKVTMN-VDEDNMTRKYMG--GNYYEDSVMVTIKGLEI 777

Query: 625 E-MNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESL 683
           E + IL+ F  ID SSN+F+G+IP+ +G LN L+ LN SHN+LTG IPSS  NL +LESL
Sbjct: 778 EFVKILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIPSSFGNLKLLESL 837

Query: 684 DLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPL 743
           DLSSN+L+G IP QLTSL FL  LNLS N L G IP+G QF+TF +DSY GN  LCGFPL
Sbjct: 838 DLSSNKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDSYNGNSELCGFPL 897

Query: 744 SDKCSNIDDAQEPAPRDTWSW---FDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRM 800
           S KC   D+  EP+  +   +   FDWK  ++GY  GLV G S+G + F  G+P+W V +
Sbjct: 898 SKKCI-ADETPEPSKEEDAEFENKFDWKFMLVGYGCGLVYGLSLGGIIFLIGKPKWFVSI 956

Query: 801 VE---RKRIRR 808
           +E    K+IRR
Sbjct: 957 IEENIHKKIRR 967

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 360/699 (51%), Positives = 457/699 (65%), Gaps = 23/699 (3%)

Query: 134 SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNL 193
           S+  L L  C   G +PASL NL QL  L LS N+++G IP    +L +L  L+L+  N 
Sbjct: 224 SIKVLDLGNCAFYGSVPASLGNLQQLNQLDLSNNNWTGQIPDVFGNLSKLNSLSLQVGNF 283

Query: 194 VGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVL 253
            G +P S  NLT+L  LDLS NQL G LP  + GL N+  L LS N L+GTIPS LF  L
Sbjct: 284 SGMLPSSVFNLTELLRLDLSQNQLEGTLPDHICGLDNVTYLDLSYNLLSGTIPSCLFG-L 342

Query: 254 PYLEVIHLRDNRFTGS-----------IPSTIFELVNLTSIRLSSNNLSGHIELCMFARL 302
           P L   +L +N  TG            IP +I ELVNLT+  +SSNNLSG ++L +F+ +
Sbjct: 343 PSLVWFNLNNNHLTGELGEHCNKINGLIPPSISELVNLTNFDVSSNNLSGIVDLNLFSNM 402

Query: 303 KNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENK 362
           KNL  L LS N LSV T  + NST+P+  KL LS+CNI EFPDFL+ Q++L +L LS N+
Sbjct: 403 KNLWGLDLSHNSLSVVTNNNRNSTWPQFYKLALSSCNIIEFPDFLKIQNQLNFLSLSHNR 462

Query: 363 IYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLI 422
           I+G IP W    G  +L  L+LS NFLT V ++P  +L++LDL SNLLQ    +LP  + 
Sbjct: 463 IHGEIPKWLSAKGMQSLQYLDLSHNFLTIVNELP-PSLQYLDLTSNLLQQPFPILPQSMY 521

Query: 423 FFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVD-SITLIWLDLHLNSFNG 481
              I+NNKLTGEIP   C     + I+LSNNSLSG IP+CL + S  L  L+L  NSF+G
Sbjct: 522 ILLIANNKLTGEIPPWICNITTFQIINLSNNSLSGNIPQCLGNFSTELSVLNLRSNSFHG 581

Query: 482 SIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL 541
           +IP     G+ + +L LN N+ EG LP SLANC  L+VL++ NN I+D+FP WL  LP+L
Sbjct: 582 TIPGSFTEGNKIRSLDLNGNELEGSLPLSLANCKMLEVLDLGNNYINDSFPLWLQTLPKL 641

Query: 542 LVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTV 601
            VL+LRSN+ +G IGN  A   F  LRI+DLS NEF G+LPT+Y  N +AM +       
Sbjct: 642 QVLVLRSNRLHGSIGNPTAISPFSSLRIIDLSHNEFIGLLPTQYIANFQAMKKVDGEVKA 701

Query: 602 QVQYMHRFGRYYSAFFTLKGIDVEMN-ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLN 660
             +Y+       S   T+KG ++ M  IL+IF  ID SSNRFEGQIP+ VG L+ L +LN
Sbjct: 702 TPKYIGEIYYQDSIVLTMKGTEIPMERILTIFTTIDLSSNRFEGQIPKEVGLLSSLIVLN 761

Query: 661 FSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ 720
            S N +TG+IPSSL NLT LESLDLSSN L G IP+QLT L FL+ LNLS+NQL GPIP 
Sbjct: 762 ISRNSVTGQIPSSLGNLTALESLDLSSNGLGGGIPSQLTRLTFLAVLNLSYNQLVGPIPH 821

Query: 721 GPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAP----RDTWSWFDWKVAMMGYAS 776
           G QF+TFQ+DSY+GNL LCGFPLS KCS  D A +P P     D  S F+WK AM+GY  
Sbjct: 822 GSQFDTFQNDSYVGNLRLCGFPLSVKCSG-DVAPQPPPFQEKEDPASLFNWKFAMIGYGC 880

Query: 777 GLVIGFSIGYMAFATGRPRWLVRMVE---RKRIRRQSTR 812
           GLVIG S+GY+ F TG+P+W VR VE   +K +RR++ R
Sbjct: 881 GLVIGLSVGYIVFTTGKPQWFVRKVEVEQKKWLRRRTKR 919

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 394/910 (43%), Positives = 525/910 (57%), Gaps = 102/910 (11%)

Query: 3    TGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNL 62
            TG VIGL L+ S L+GSI S+S+LF L +L  L+L  NDFN S+I  G G+L  L  L+L
Sbjct: 95   TGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDLSDNDFNYSVIPFGVGQLSRLRSLDL 154

Query: 63   SNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDM-ST 121
            S S FSGQIPS++  LSK++ LDLS N  ++++ P  + L++NLT LK+L LS+V++ ST
Sbjct: 155  SYSRFSGQIPSKLLALSKLVFLDLSANPMLQLQKPGLRNLVQNLTHLKKLHLSQVNIFST 214

Query: 122  IVLDY----------------------------SLTNLS-----------------SSLS 136
            I  +                             SL  LS                 S L 
Sbjct: 215  IPHELASLSSLTSLFLRECGLHGEFPMKIFQLPSLQYLSVRYNPDLIGYLPEFQETSPLK 274

Query: 137  YLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG 196
             L+L G +  G +PAS+ +L  LT L +S  +F+   PS L+H+ QL  L+L  N+  G 
Sbjct: 275  MLYLAGTSFYGELPASIGSLDSLTELDISSCNFTRLFPSPLAHIPQLSLLDLSNNSFSGQ 334

Query: 197  IPDSFVNLTQLSFLDLSWNQ------------------------LTGRLPSCLKGLRNLV 232
            IP    NLTQL++LDLS N                         LTG +PS L  +  L 
Sbjct: 335  IPSFMANLTQLTYLDLSSNDFSVGTLAWVGKQTKLTYLYLDQMNLTGEIPSSLVNMSELT 394

Query: 233  TLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSG 292
             L LS N L G IPSWL   L  L  ++L +N+  G IPS++FELVNL S+ L SN L+G
Sbjct: 395  ILSLSRNQLIGQIPSWLMN-LTQLTELYLEENKLEGPIPSSLFELVNLQSLYLHSNYLTG 453

Query: 293  HIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDR 352
             +EL M ++LKNL  L LS NRLS+ +    N+T P    LGL +CN++EFPDFL++QD 
Sbjct: 454  TVELHMLSKLKNLTGLLLSGNRLSLLSYTRTNATLPTFKLLGLGSCNLTEFPDFLQNQDE 513

Query: 353  LEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPL----KNLRFLDLRSN 408
            L  L LS+NKI+G IP W W+I K+TL  L LS NFLT  +Q P+      L  L L  N
Sbjct: 514  LVVLSLSDNKIHGPIPKWVWNISKETLEALRLSGNFLTGFDQRPVVLPWSRLYSLQLDFN 573

Query: 409  LLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVD-SI 467
            +LQG + + PP  I +S+  NKLTGEI    C  + ++ +DL+ N+LSG IP+CL + S 
Sbjct: 574  MLQGPLPIPPPSTILYSVYGNKLTGEISPLICNMSSLKLLDLARNNLSGRIPQCLANFSK 633

Query: 468  TLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRI 527
            +L  LDL  NS +G IPQ     + L  + L +NQF G +P+S ANC  L+ L + NN+I
Sbjct: 634  SLSVLDLGSNSLDGPIPQTCTVPNNLRVIDLGENQFRGQIPRSFANCMMLEHLVLGNNQI 693

Query: 528  DDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQ 587
            DD FP WL  LP+L VLILRSN+F+G IG+      FPKL I+DLS NEFTG LP+ YFQ
Sbjct: 694  DDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKLHIIDLSYNEFTGNLPSEYFQ 753

Query: 588  NLKAM-------MRGSNTSTVQVQYMHRFGRYYSAF----------FTLKGIDVEM-NIL 629
            NL AM       +     + VQ+  + R                    +KG+  E  NI 
Sbjct: 754  NLDAMRILDGGQLGYKKANVVQLPIVLRTKYMMGDMVGPRNDTHIKMMIKGMRREYKNIP 813

Query: 630  SIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNR 689
               + ID SSN+F+G+IPE +G L  L  LN S+N LTG I +SL NLT LE+LDLS N+
Sbjct: 814  YNLMNIDLSSNKFDGEIPESIGGLVGLYSLNLSNNALTGPILTSLANLTQLEALDLSQNK 873

Query: 690  LVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSN 749
            L+G+IP QLT L FL+  ++SHN L GPIPQG QFNTF + S+ GN GLCG PLS  C +
Sbjct: 874  LLGEIPQQLTQLTFLAVFSVSHNHLTGPIPQGKQFNTFSNSSFDGNPGLCGSPLSRVCGS 933

Query: 750  IDDAQEPAPRDTW-----SWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVER- 803
                    P  T+     S FDWK+ +MGY SG+V+G SIGY      +  W V+   R 
Sbjct: 934  SKGWSLTPPPSTFGNGSPSDFDWKIVLMGYGSGIVMGVSIGY-CLTVWKHEWFVKTFGRQ 992

Query: 804  -KRIRRQSTR 812
             +++R++  +
Sbjct: 993  QRKLRKKEQK 1002

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568090|ref|XP_002525021.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223535683|gb|EEF37348.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 402/923 (43%), Positives = 527/923 (57%), Gaps = 123/923 (13%)

Query: 2   VTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFN-SSLISSGFGRLISLTHL 60
           +TG VIGLDLSC  L G I  N++L LL +L+ LNL    F+ SS+ SSGF    +LT+L
Sbjct: 78  LTGDVIGLDLSCRPLGGKIAPNTTLLLLSHLQRLNLAYTYFDDSSIPSSGFSLWTNLTYL 137

Query: 61  NLSNSYFSGQIPSEISQLSKMLSLDLSKND-EVRIESPVWKGLIENLTKLKELVLSEVDM 119
           NLS    SGQ PS++ +LSK++SLDLS ND E    +   + ++ NLT+L +L LSEV+M
Sbjct: 138 NLSTCGLSGQTPSDLHRLSKLVSLDLSGNDLEFDFNTNGLENILANLTELIDLDLSEVNM 197

Query: 120 STIVLDYSLTNLSSSLSYLHLTGCNLIGPI------------------------------ 149
           S I  + +  NLSSSL  L  + C+L G                                
Sbjct: 198 SLISSE-AFLNLSSSLRTLRFSDCSLRGNFDGDFARFKSLELFDLSYNNDFVLNMTTANW 256

Query: 150 PASL-------------------ANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQ 190
           P+SL                    NL  +  L LS+N+  G IP+ L +L+ L YL L  
Sbjct: 257 PSSLRSLNLYATGSSGELLEHSIGNLKSMEYLDLSFNNLFGLIPTSLGNLESLEYLYLRN 316

Query: 191 NNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSG------------ 238
           NNL G +P +  NL QL FLDLS N  +G++P     LR L  L L G            
Sbjct: 317 NNLSGSVPHTLGNLKQLKFLDLSSNHFSGQIPDIYADLRKLEFLYLFGNDFSGQLPPSMF 376

Query: 239 ------------NSLNGTIPSWLFTVL---------------------PY---LEVIHLR 262
                       N+LNGTIPSWLF +                      P+   L+ + L 
Sbjct: 377 KFTELYSLDISFNNLNGTIPSWLFALPSLNGLDLQNNNLNGPIKHFQNPHHSSLKYVRLS 436

Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFA-RLKNLQYLYLSQNRLSVNTKL 321
           DN   G IP +IFEL NLT + LSSN LSG IE  M             + ++LS+ +  
Sbjct: 437 DNMIDGPIPISIFELTNLTELDLSSNKLSGIIEWSMLQKLKNLENLNLSNNSQLSLTSNT 496

Query: 322 DANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYN 381
           D +     L K+ LS+CNI+EFP FL +Q  L  L LS N+I+G+      + G  +L  
Sbjct: 497 DISFNLTNLWKMTLSSCNITEFPYFLSTQQALTALDLSNNRIHGQFSKQKSE-GWKSLQF 555

Query: 382 LNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCT 441
           LNLS NFLT ++Q P +N+  LDL  N LQG + V PP +  F +SNN+L+GEIP   C 
Sbjct: 556 LNLSGNFLTGLDQHPWQNIDTLDLNFNWLQGQLSVPPPSIRQFMVSNNRLSGEIPSFICN 615

Query: 442 AAPIEFIDLSNNSLSGPIPECLVDSITLIW---LDLHLNSFNGSIPQISANGSGLVNLIL 498
              I+ +DLSNN  SG IP+CL   I + W   LDL  N+F+G IP++  N   LV L L
Sbjct: 616 LGSIQVLDLSNNGFSGLIPKCL--GIMMNWLVILDLRNNNFSGKIPEVFGNSGSLVYLNL 673

Query: 499 NDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNT 558
           + N FEGPLP SL NCS L++L+  NN I DTFPHWL  LP L +LILRSN F+G +G+ 
Sbjct: 674 HGNNFEGPLPPSLGNCSGLRILDFGNNNIRDTFPHWLEALPNLEILILRSNSFHGEVGDP 733

Query: 559 DARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRF--GRYYSAF 616
                FP L+ILDLS N FTG +P +  QNLK+++     + +      +   GRY    
Sbjct: 734 SVDHPFPSLQILDLSHNHFTGFVPIKLMQNLKSVVYVDKDANLPEYVGDKLFVGRYQYFL 793

Query: 617 -------FTLKGIDVEM-NILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG 668
                    +KG  VE+  IL+I  V+D SSN F G+IPE +G L  L +LNFSHN LTG
Sbjct: 794 VDAPLISLIIKGWGVELRKILTILTVVDCSSNEFRGEIPEEIGMLKSLVVLNFSHNSLTG 853

Query: 669 RIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQ 728
           RIP S  NLT +ESLDLSSN+LVG+IP+QLT L+FL+ LNL+ NQL+G IPQG QFNTF 
Sbjct: 854 RIPLSFANLTNMESLDLSSNKLVGEIPSQLTLLSFLAVLNLTFNQLKGQIPQGKQFNTFA 913

Query: 729 SDSYIGNLGLCGFPLSDKCSNIDDAQ-EPAP-----RDTWSWFDWKVAMMGYASGLVIGF 782
           +DSY+GNLGLCGFPLS KCS+ +  Q  P+P      D+  WFDWK A+MGY  G+V G 
Sbjct: 914 NDSYVGNLGLCGFPLSQKCSSGEPPQLSPSPIPHEEEDSQGWFDWKFALMGYGCGMVFGL 973

Query: 783 SIGYMAFATGRPRWLVRMVERKR 805
           S+GY+  AT +P+W+VR++E ++
Sbjct: 974 SMGYIVLATRKPQWIVRIIEERQ 996

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 395/909 (43%), Positives = 513/909 (56%), Gaps = 128/909 (14%)

Query: 2   VTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
           VTG VIGLDLSCSWL+G+I SNS+LFL P+L  LNL  NDFN S +S+ FGR  SLTHLN
Sbjct: 88  VTGHVIGLDLSCSWLYGTIHSNSTLFLFPHLRRLNLAFNDFNGSSVSTRFGRFSSLTHLN 147

Query: 62  LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
           LS S FSG I  EIS L+ ++SLDLS N         +  L+ NLTKL++L L  + +S+
Sbjct: 148 LSESLFSGLISPEISHLANLVSLDLSGNG-AEFAPHGFNSLLLNLTKLQKLHLGGISISS 206

Query: 122 ------------IVLDYSLTNL----------------------------------SSSL 135
                       I LD S   L                                  ++SL
Sbjct: 207 VFPNSLLNQSSLISLDLSDCGLHGSFHDHDIHLPKLEVLNLWGNNALNGNFPRFSENNSL 266

Query: 136 SYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVG 195
             L L   N  G +PAS+ NL  L +L LS   F G IP+ L +LKQ+  LNL  N+  G
Sbjct: 267 LELVLASTNFSGELPASIGNLKSLKTLDLSICQFLGSIPTSLENLKQITSLNLIGNHFSG 326

Query: 196 GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL-------------- 241
            IP+ F NL  L  L LS N  +G  P  +  L NL  L  S N L              
Sbjct: 327 KIPNIFNNLRNLISLGLSNNNFSGHFPPSIGNLTNLYELDFSNNQLEGVIHSHVNEFSFS 386

Query: 242 ------------NGTIPSWLFTV---------------------LPYLEVIHLRDNRFTG 268
                       NGTIPSWL+T+                        LE I+L  N   G
Sbjct: 387 SLSYVNLGYNLFNGTIPSWLYTLSSLVVLDLSHNKLTGHIDEFQFDSLENIYLNMNELHG 446

Query: 269 SIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFP 328
            IPS+IF+LVNL  + LSSNNLS  +E   F  L+NL  L LS N L + T  ++NS  P
Sbjct: 447 PIPSSIFKLVNLRYLYLSSNNLSEVLETNKFGNLRNLIELDLSNNMLLLTTSGNSNSILP 506

Query: 329 KLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNF 388
                                   +E L LS NKI G    W W++G DTL+ LNLS N 
Sbjct: 507 N-----------------------IESLDLSNNKISGV---WSWNMGNDTLWYLNLSYNS 540

Query: 389 LTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFI 448
           ++  + +P KN+  LDL SNLLQG +   P    FFS+S+NKL+GEI    C A+ +E +
Sbjct: 541 ISGFKMLPWKNIGILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEISSLICRASSMEIL 600

Query: 449 DLSNNSLSGPIPECLVD-SITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPL 507
           DLS+N+LSG +P CL + S  L  L+L  N F+G+IPQ    G+ + +L  NDNQ +G +
Sbjct: 601 DLSDNNLSGRLPHCLGNFSKYLSVLNLRRNRFHGNIPQTFLKGNAIRDLDFNDNQLDGLV 660

Query: 508 PQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKL 567
           P+SL  C +L+VL++ NN+I+DTFPHWL  L +L VL+LRSN F+G I ++  +  F  L
Sbjct: 661 PRSLIICRKLEVLDLGNNKINDTFPHWLGTLSKLQVLVLRSNSFHGHIRHSKIKSPFMSL 720

Query: 568 RILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVE-M 626
           RI+DL+ N+F G LP  Y ++LKA+M   N   +  +YM       S   T+KG+++E +
Sbjct: 721 RIIDLAHNDFEGDLPELYLRSLKAIMN-VNEGNMTRKYMGNNYYQDSIMVTIKGLEIEFV 779

Query: 627 NILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLS 686
            IL+ F  ID SSN+F+G+IP+ +G LN L+ LN SHN+L G IPS L NL  LESLDLS
Sbjct: 780 KILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLGGHIPSPLGNLKSLESLDLS 839

Query: 687 SNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDK 746
           SN+L+G+IP +LTSL FL  LNLS N L G IP+G QF TF +DSY  N GLCGFPLS K
Sbjct: 840 SNKLIGRIPQELTSLTFLEVLNLSQNNLTGFIPRGNQFETFGNDSYNENSGLCGFPLSKK 899

Query: 747 CSNIDDAQEPAPRDTWSW---FDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVER 803
           C+  D+  EP+      +   FDWK+ +MGY  GLVIG S+G + F TG+P WL RMVE 
Sbjct: 900 CT-ADETLEPSKEANTEFDGGFDWKITLMGYGCGLVIGLSLGCLVFLTGKPEWLTRMVE- 957

Query: 804 KRIRRQSTR 812
           + I +  TR
Sbjct: 958 ENIHKTITR 966

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147793123|emb|CAN75335.1| hypothetical protein VITISV_032542 [Vitis vinifera]

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 388/889 (43%), Positives = 515/889 (57%), Gaps = 132/889 (14%)

Query: 2   VTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
           VTG VI LDLSCSWL G+I SN++LFLLP+++ LNL  N+F+ S IS GFGR  SLTHLN
Sbjct: 89  VTGHVIELDLSCSWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHLN 148

Query: 62  LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
           LS+S FSG I  EIS LS ++SLDLS N +       +  L++NLTKL++L L  + +S+
Sbjct: 149 LSDSGFSGLISPEISHLSNLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGGISISS 208

Query: 122 IVLDYSLT----------------------------------------------NLSSSL 135
           +  +  L                                               N ++SL
Sbjct: 209 VFPNSLLNRSSLISLHLSSCGLHGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRFNENNSL 268

Query: 136 SYLHLTGCNLIGPIPA------------------------SLANLPQLTSLSLSYNHFSG 171
           + L+L   N  G +PA                        SL NL Q+TSL+L+ NHFSG
Sbjct: 269 TELYLLSKNFSGELPASIGNLKSLQTLDLSNCEFSGSIPASLENLTQITSLNLNGNHFSG 328

Query: 172 HIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKG--LR 229
            IP+  ++L+ L  + L  N+  G  P S  NLT L +LD S+NQL G +PS +      
Sbjct: 329 KIPNIFNNLRNLISIGLSNNHFSGQFPPSIGNLTNLYYLDFSYNQLEGVIPSHVNEFLFS 388

Query: 230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS-------------------- 269
           +L  + L  N  NG IPSWL+T+L  L V+HL  N+ TG                     
Sbjct: 389 SLSYVYLGYNLFNGIIPSWLYTLLS-LVVLHLGHNKLTGHIGEFQFDSLEMIDLSMNELH 447

Query: 270 --IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTF 327
             IPS+IF+LVNL S+ LSSNNLSG +E   F +L+NL  LYLS N LS+ T  ++N   
Sbjct: 448 GPIPSSIFKLVNLRSLYLSSNNLSGVLETSNFGKLRNLINLYLSNNMLSLTTSSNSNCIL 507

Query: 328 PKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDN 387
           PK                       +E + LS NKI G    W W++GKDTL+ LNLS N
Sbjct: 508 PK-----------------------IESIDLSNNKISGV---WSWNMGKDTLWYLNLSYN 541

Query: 388 FLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEF 447
            ++  E +P KN+  LDL SNLLQG++   P    FFS+ +NKL+G I    C  + I  
Sbjct: 542 SISGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIRV 601

Query: 448 IDLSNNSLSGPIPECLVD-SITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGP 506
           +DLS+N+LSG +P CL + S  L  L+L  N F+G+IPQ    G+ + NL  NDN+ EG 
Sbjct: 602 LDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGL 661

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPK 566
           +P+SL  C +L+VLN+ NN+I+DTFPHWL  LPEL VL+LRSN F+G IG +  +  F  
Sbjct: 662 VPRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMS 721

Query: 567 LRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYY--SAFFTLKGIDV 624
           LRI+DL+ N+F G LP  Y ++LK  M   +   +  +YM   G YY  S   T+KG+++
Sbjct: 722 LRIIDLAHNDFEGDLPEMYLRSLKVTMN-VDEDNMTRKYMG--GNYYEDSVMVTIKGLEI 778

Query: 625 E-MNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESL 683
           E + IL+ F  ID SSN+F+G+IP+ +G LN L+ LN SHN+LTG IPSS  NL +LESL
Sbjct: 779 EFVKILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIPSSFGNLKLLESL 838

Query: 684 DLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPL 743
           DLSSN+L+G IP QLTSL FL  LNLS N L G IP+G QF+TF +DSY GN  LCGFPL
Sbjct: 839 DLSSNKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDSYNGNSELCGFPL 898

Query: 744 SDKCSNIDDAQEPAPRDTWSW---FDWKVAMMGYASGLVIGFSIGYMAF 789
           S KC   D+  EP+  +   +   FDWK  ++GY  GLV G S+G + F
Sbjct: 899 SKKCI-ADETPEPSKEEDAEFENKFDWKFMLVGYGCGLVYGLSLGGIIF 946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	816
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.969	0.888	0.374	4.6e-121
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.965	0.861	0.377	1.2e-120
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.962	0.882	0.378	1.1e-119
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.971	0.778	0.368	9.8e-119
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.963	0.889	0.382	9.8e-119
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.963	0.892	0.370	9.8e-119
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.973	0.798	0.374	2e-118
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.808	0.816	0.399	1.4e-112
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.941	0.888	0.365	5.9e-112
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.943	0.816	0.362	1.6e-111

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 312/834 (37%), Positives = 445/834 (53%)

Query:     3 TGQVIGLDL-SCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
             TG V  L L  C  L G++ SNSSLF    L  ++L +N+  SS + SGFG L  L  L 
Sbjct:    72 TGAVAVLQLRKC--LSGTLKSNSSLFGFHQLRYVDLQNNNLTSSSLPSGFGNLKRLEGLF 129

Query:    62 LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
             LS++ F GQ+PS  S L+ +  LDLS N ++    P    L+  L KL  L LS    S 
Sbjct:   130 LSSNGFLGQVPSSFSNLTMLAQLDLSYN-KLTGSFP----LVRGLRKLIVLDLSYNHFSG 184

Query:   122 IVLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHXX 181
              +                    N    +P+   NL +L +L LS N FSG +PS +S+  
Sbjct:   185 TLNPNSSLFELHQLRYLNLAFNNFSSSLPSKFGNLHRLENLILSSNGFSGQVPSTISNLT 244

Query:   182 XXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL 241
                             P    NLT L  LDLS+N+  G +PS L  L  L  L L  N+L
Sbjct:   245 RLTKLYLDQNKLTSSFP-LVQNLTNLYELDLSYNKFFGVIPSSLLTLPFLAHLALRENNL 303

Query:   242 NGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFAR 301
              G++     +    LE+++L  N F G I   I +L+NL  + LS  N S  I+L +F+ 
Sbjct:   304 AGSVEVSNSSTSSRLEIMYLGSNHFEGQILEPISKLINLKHLDLSFLNTSYPIDLKLFSS 363

Query:   302 LKNLQYLYLSQNRLSVNTKLDANSTFPKLLK-LGLSACNISEFPDFLRSQDRLEWLQLSE 360
             LK+L+ L LS N +S +  L ++S  P  L+ L L  C+I+EFP+ L++   L ++ +S 
Sbjct:   364 LKSLRSLDLSGNSIS-SASLSSDSYIPLTLEMLTLRHCDINEFPNILKTLKELVYIDISN 422

Query:   361 NKIYGRIPNWFWDIGKDTLYNLNLSDNFLT----DVEQVPLKNLRFLDLRSNLLQGSVMV 416
             N++ G+IP W W +    L ++ L +N+ T      E +   ++  L L SN  +G++  
Sbjct:   423 NRMKGKIPEWLWSL--PLLQSVTLGNNYFTGFQGSAEILVNSSVLLLYLDSNNFEGALPD 480

Query:   417 LPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHL 476
             LP  +  F +++N  T EIP S C  + +  IDLS N+ +GPIP CL  ++ L++L    
Sbjct:   481 LPLSIKGFGVASNSFTSEIPLSICNRSSLAAIDLSYNNFTGPIPPCL-RNLELVYL--RN 537

Query:   477 NSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLA 536
             N+  GSIP    +G+ L  L ++ N+  G LP+S  NCS L+ L+V NNRI+DTFP WL 
Sbjct:   538 NNLEGSIPDALCDGASLRTLDVSHNRLTGKLPRSFVNCSSLKFLSVINNRIEDTFPFWLK 597

Query:   537 QLPELLVLILRSNKFYGLIGNTDARVI-FPKLRILDLSRNEFTGVLPTRYFQNLKAMMRG 595
              LP L VL LRSN+FYG I       + FP+LRI ++S N+FTG LP  YF N KA  R 
Sbjct:   598 ALPNLQVLTLRSNRFYGPISPPHQGPLGFPELRIFEISDNKFTGSLPPNYFVNWKASSRT 657

Query:   596 SNTST-VQVQYMHRF---GRY-YSAFFTL--KGIDVEM-NILSIFLVIDFSSNRFEGQIP 647
              N    + + Y  +    G Y Y+    L  KG+ +E    L+ +  IDFS NR EGQIP
Sbjct:   658 MNQDGGLYMVYEEKLFDEGGYGYTDALDLQYKGLHMEQAKALTSYAAIDFSGNRLEGQIP 717

Query:   648 EVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKL 707
             E +G L  L  +N S+N  TG IP S+ NL  LESLD+S N+L G IP  L S++FL+ +
Sbjct:   718 ESIGLLKALIAVNISNNAFTGHIPLSMANLENLESLDMSRNQLSGTIPNGLGSISFLAYI 777

Query:   708 NLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNID------------DAQE 755
             N+SHNQL G IPQG Q       S+ GN GLCG PL + C                + +E
Sbjct:   778 NVSHNQLTGEIPQGTQITGQSKSSFEGNAGLCGLPLKESCFGTGAPPMYHQKQEDKEEEE 837

Query:   756 PAPRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVE-RKRIRR 808
                 +     + +   +GY SGL++G +I  +  A+ +P WLV+++   KR +R
Sbjct:   838 EEEEEEEEVLNGRAVAIGYGSGLLLGLAIAQV-IASYKPEWLVKIIGLNKRRKR 890

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
 Identities = 312/826 (37%), Positives = 447/826 (54%)

Query:     3 TGQVIGLDL-SCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
             TG V  L L +C  L G++  NSSLF   +L +L L  N+F SS ISS FG L +L  L+
Sbjct:   103 TGAVTMLQLRAC--LSGTLKPNSSLFQFHHLRSLLLPHNNFTSSSISSKFGMLNNLEVLS 160

Query:    62 LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
             LS+S F  Q+P   S LS + +L LS ND     S        NL KL+ L +S    S 
Sbjct:   161 LSSSGFLAQVPFSFSNLSMLSALVLSNNDLTGSLS-----FARNLRKLRVLDVSYNHFSG 215

Query:   122 IVLDXXXXXXXXXXXXXXXXGCNLIGP-IPASLANLPQLTSLSLSYNHFSGHIPSFLSHX 180
             I+                    N     +P    NL +L  L +S N F G +P  +S+ 
Sbjct:   216 ILNPNSSLFELHHIIYLNLRYNNFTSSSLPYEFGNLNKLEVLDVSSNSFFGQVPPTISNL 275

Query:   181 XXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNS 240
                           G +P    NLT+LS L L  N  +G +PS L  +  L  L L GN+
Sbjct:   276 TQLTELYLPLNHFTGSLP-LVQNLTKLSILHLFGNHFSGTIPSSLFTMPFLSYLSLKGNN 334

Query:   241 LNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFA 300
             LNG+I     +    LE +HL +N F G I   I +L+NL  + LS  N S  I+L +F+
Sbjct:   335 LNGSIEVPNSSSSSRLESLHLGENHFEGKILEPISKLINLKELDLSFLNTSYPIDLSLFS 394

Query:   301 RLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK-LGLSACNISEFPDFLRSQDRLEWLQLS 359
              LK+L  L LS + +S    L  +S  P  L+ L L  C+IS+FP+  ++   LE++ LS
Sbjct:   395 SLKSLLLLDLSGDWIS-KASLTLDSYIPSTLEVLRLEHCDISDFPNVFKTLHNLEYIALS 453

Query:   360 ENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVE---QVPLKN-LRFLDLRSNLLQGSVM 415
              N+I G+ P W W + +  L ++ ++DN LT  E   +V + + ++ L L +N L+G++ 
Sbjct:   454 NNRISGKFPEWLWSLPR--LSSVFITDNLLTGFEGSSEVLVNSSVQILSLDTNSLEGALP 511

Query:   416 VLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLH 475
              LP  + +FS  +N+  G+IP S C  + ++ +DLS N+ +GPIP CL +   L++L L 
Sbjct:   512 HLPLSINYFSAIDNRFGGDIPLSICNRSSLDVLDLSYNNFTGPIPPCLSN---LLYLKLR 568

Query:   476 LNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWL 535
              N+  GSIP      + L +L +  N+  G LP+SL NCS LQ L+V +N I DTFP  L
Sbjct:   569 KNNLEGSIPDKYYEDTPLRSLDVGYNRLTGKLPRSLINCSALQFLSVDHNGIKDTFPFSL 628

Query:   536 AQLPELLVLILRSNKFYG-LIGNTDARVIFPKLRILDLSRNEFTG-VLPTRYFQNLKAMM 593
               LP+L VL+L SNKFYG L    +  + FP+LRIL+++ N+ TG  L + +F N KA  
Sbjct:   629 KALPKLQVLLLSSNKFYGPLSPPNEGPLGFPELRILEIAGNKLTGSFLSSDFFVNWKASS 688

Query:   594 RGSNTSTVQVQYMHR--FGRYYSAFF-TL----KGIDVEM-NILSIFLVIDFSSNRFEGQ 645
                N          +  FG Y+  ++ T+    KG+ +E  N+L+    IDFS NR EG+
Sbjct:   689 HTMNEDLGLYMVYGKVIFGNYHLTYYETIDLRYKGLSMEQRNVLTSSATIDFSGNRLEGE 748

Query:   646 IPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLS 705
             IPE +G L  L  LN S+N  TG IP S  NL  +ESLDLSSN+L G IP  L +L+FL+
Sbjct:   749 IPESIGLLKALIALNLSNNAFTGHIPLSFANLKKMESLDLSSNQLSGTIPNGLRTLSFLA 808

Query:   706 KLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKC--SNIDDAQEPAPRDTWS 763
              +N+SHNQL G IPQG Q       S+ GN GLCGFPL + C  +N   AQ P  ++   
Sbjct:   809 YVNVSHNQLIGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNTPPAQHPKEQEEEE 868

Query:   764 W----FDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKR 805
                   +WK   +GY  G+++G +I  +  +  +P+WL  +V + R
Sbjct:   869 EDEQVLNWKAVAIGYGIGVLLGLAIAQL-ISLYKPKWLASLVIKSR 913

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
 Identities = 312/825 (37%), Positives = 452/825 (54%)

Query:     3 TGQVIGLDL-SCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
             TG V  L L +C  L G++  NSSLF   +L +L L  N+F SS ISS FG L +L  L+
Sbjct:    72 TGAVTMLQLRAC--LSGTLKPNSSLFQFHHLRSLLLPHNNFTSSSISSKFGMLNNLEVLS 129

Query:    62 LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
             LS+S F  Q+P   S LS + +LDLSKN+     S      + NL KL+ L +S    S 
Sbjct:   130 LSSSGFLAQVPFSFSNLSMLSALDLSKNELTGSLS-----FVRNLRKLRVLDVSYNHFSG 184

Query:   122 IVLDXXXXXXXXXXXXXXXXGCNLIGP-IPASLANLPQLTSLSLSYNHFSGHIPSFLSHX 180
             I+                    N     +P    NL +L  L +S N F G +P  +S+ 
Sbjct:   185 ILNPNSSLFELHHLIYLNLRYNNFTSSSLPYEFGNLNKLEVLDVSSNSFFGQVPPTISNL 244

Query:   181 XXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNS 240
                           G +P    NLT+LS L L  N  +G +PS L  +  L ++ L+ N+
Sbjct:   245 TQLTELYLPLNDFTGSLP-LVQNLTKLSILHLFGNHFSGTIPSSLFTMPFLSSIYLNKNN 303

Query:   241 LNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFA 300
             L+G+I     +    LE ++L  N   G I   I +LVNL  + LS  N S  I+L +F+
Sbjct:   304 LSGSIEVPNSSSSSRLEHLYLGKNHL-GKILEPIAKLVNLKELDLSFLNTSHPIDLSLFS 362

Query:   301 RLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK-LGLSACNISEFPDFLRSQDRLEWLQLS 359
              LK+L  L LS + +S    L  +S  P  L+ L L  C+ISEFP+  ++   LE++ LS
Sbjct:   363 SLKSLLLLDLSGDWIS-KASLTLDSYIPSTLEVLRLEHCDISEFPNVFKTLHNLEYIALS 421

Query:   360 ENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVE---QVPLKN-LRFLDLRSNLLQGSVM 415
              N+I G+ P W W + +  L ++ ++DN LT  E   +V + + ++ L L +N L+G++ 
Sbjct:   422 NNRISGKFPEWLWSLPR--LSSVFITDNLLTGFEGSSEVLVNSSVQILSLDTNSLEGALP 479

Query:   416 VLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLH 475
              LP  + +FS  +N+  G+IP S C  + ++ +DLS N+ SG IP CL +   L++L L 
Sbjct:   480 HLPLSINYFSAIDNRFGGDIPLSICNRSSLDVLDLSYNNFSGQIPPCLSN---LLYLKLR 536

Query:   476 LNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWL 535
              N+  GSIP      + L +  +  N+  G LP+SL NCS LQ L+V +N I DTFP +L
Sbjct:   537 KNNLEGSIPDKYYVDTPLRSFDVGYNRLTGKLPRSLINCSALQFLSVDHNGIKDTFPFYL 596

Query:   536 AQLPELLVLILRSNKFYGLIGNTDARVI-FPKLRILDLSRNEFTGVLPTRYFQNLKAMMR 594
               LP+L VL+L SN+FYG +   +   + FP+LRIL+++ N+ TG LP  +F N KA   
Sbjct:   597 KALPKLQVLLLSSNEFYGPLSPPNQGPLGFPELRILEIAGNKLTGSLPPDFFVNWKASSH 656

Query:   595 GSNTST-VQVQYMHR-FGRYYSAFF-TL----KGIDVEM-NILSIFLVIDFSSNRFEGQI 646
               N    + + Y    FG Y+  ++ T+    KG+ +E  N+L+    ID S NR EG+I
Sbjct:   657 TMNEDLGLYMVYSKVIFGNYHLTYYETIDLRYKGLSMEQENVLTSSATIDLSGNRLEGEI 716

Query:   647 PEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSK 706
             PE +G L  L  LN S+N  TG IP SL NL  +ESLDLSSN+L G IP  L +L+FL+ 
Sbjct:   717 PESLGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGLGTLSFLAY 776

Query:   707 LNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKC--SNIDDAQEP-----APR 759
             +N+SHNQL G IPQG Q       S+ GN GLCGFPL + C  +N   AQ+P     A  
Sbjct:   777 MNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNAPPAQKPKEEEEAEE 836

Query:   760 DTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERK 804
             D     +WK   +GY  G+++G +I  +  A+ +P WLV +V+ +
Sbjct:   837 DEQE-LNWKAVAIGYGVGVLLGLAIAQL-IASYKPEWLVCLVKSR 879

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 310/841 (36%), Positives = 449/841 (53%)

Query:     5 QVIGLDLSCSWLHGS-----IPSNSSLFLLPYLETLNLGSNDFN----SSLISSGFGRLI 55
             +++ LDLS S   G      +  + S   L      NL   D +    SS I   F  + 
Sbjct:   192 KLVSLDLSSSDFFGDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKISSEIPEEFSNIR 251

Query:    56 SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
             SL  LNL+     G+ PS I  +  + S+DL  N  +R   PV+    EN + LK L + 
Sbjct:   252 SLRSLNLNGCNLFGEFPSSILLIPNLQSIDLGNNPNLRGNLPVFH---ENNSLLK-LTIL 307

Query:   116 EVDMSTIVLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS 175
                 S  + D                  +  G IP SL NL  L+ LSLS N+  G IPS
Sbjct:   308 YTSFSGAIPDSISSLKNLTSLTLSVSYFS--GKIPFSLGNLSHLSHLSLSSNNLIGEIPS 365

Query:   176 FLSHXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLR 235
              + +               G +P +  NLT+L+ + LS NQ TG LP  +  L  L    
Sbjct:   366 SIGNLNQLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQFTGSLPPSISQLSKLKFFF 425

Query:   236 LSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIP-STIFELVNLTSIRLSSNNLSG-- 292
                N   G I S L  + P L  IHL  N+    +    IF L NL +  +   N +   
Sbjct:   426 ADDNPFIGAILSPLLKI-PSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYTKVR 484

Query:   293 HIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK-LGLSACNISEFPDFLRSQD 351
              ++L +F+ LK L  LY+S  R+ ++T  +  S FP  L+ L L +CNI++FP+F+R   
Sbjct:   485 PLDLNVFSSLKQLGTLYIS--RIPISTT-NITSDFPSNLEYLSLRSCNITDFPEFIRKGR 541

Query:   352 RLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLT----DVEQVPLKNLRFLDLRS 407
              L+ L LS NKI G++P+W W +   TL +++LS+N L+     V+  P   L  +DL S
Sbjct:   542 NLQILDLSNNKIKGQVPDWLWRM--PTLNSVDLSNNSLSGFHVSVKASPESQLTSVDLSS 599

Query:   408 NLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSI 467
             N  QG + +    L +FS SNN  TG+IP S C  + +E +DLSNN+L+G +P CL   +
Sbjct:   600 NAFQGPLFLPSKSLRYFSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLETLM 659

Query:   468 T-LIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNR 526
             + L  LDL  NS +GS+P+I  N + L +L ++ N+ EG LP SL  CS L+VLNV +NR
Sbjct:   660 SSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNR 719

Query:   527 IDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVI-FPKLRILDLSRNEFTGVLPTRY 585
             I+D FP  L  L +L VL+L SNKF+G + N D     FP+L+I+D+S N+F G+LP+ Y
Sbjct:   720 INDMFPFELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDY 779

Query:   586 FQNLKAMM--RGSNTSTVQVQ----YMHRFGRYYSAFFTLKGIDVEMN-ILSIFLVIDFS 638
             F N  AM   + +N     +Q    Y    G Y S     KG+ +EM  +L+I+  ID S
Sbjct:   780 FMNWTAMSSKKDNNIEPEYIQNPSVYGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLS 839

Query:   639 SNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQL 698
              N+  G+IP+ +G L  L++LN S N  TG IPSSL NL  LESLD+S N + G+IP +L
Sbjct:   840 GNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPEL 899

Query:   699 TSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQ--EP 756
              +L+ L+ +N+SHNQL G IPQG QF   +  SY GN GL G  L + C +I ++   + 
Sbjct:   900 GTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKESTPTQT 959

Query:   757 APRDTWSW-----FDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIRRQST 811
              P +T        F W  A +G+A G+V G ++GY+  +  + +W ++   R +  +Q+T
Sbjct:   960 EPLETKEEEEEESFSWIAAGLGFAPGVVFGLAMGYIVVSY-KHQWFMKTFGRSK--QQNT 1016

Query:   812 R 812
             R
Sbjct:  1017 R 1017

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 316/826 (38%), Positives = 439/826 (53%)

Query:     3 TGQVIGLDL-SCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
             TG V+ L L +C  L G++ SNSSLF    L  L L  N+F  S I S FG L  L  L 
Sbjct:    73 TGAVMKLRLRAC--LSGTLKSNSSLFQFHQLRHLYLSYNNFTPSSIPSEFGMLNKLEVLF 130

Query:    62 LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
             +S   F GQ+PS  S LS + +L L  N+     S      + NL KL  L +S    S 
Sbjct:   131 MSTGGFLGQVPSSFSNLSMLSALLLHHNELTGSLS-----FVRNLRKLTILDVSHNHFSG 185

Query:   122 IVLDXXXXXXXXXXXXXXXXGCNLI--GPIPASLANLPQLTSLSLSYNHFSGHIPSFLSH 179
               L+                G N      +P    NL +L  L +S N F G +P  +S+
Sbjct:   186 -TLNPNSSLFELHNLAYLDLGSNNFTSSSLPYEFGNLNKLELLDVSSNSFFGQVPPTISN 244

Query:   180 XXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGN 239
                            G +P    NLT+LS L LS N  +G +PS L  +  L  L L GN
Sbjct:   245 LTQLTELYLPLNDFTGSLP-LVQNLTKLSILHLSDNHFSGTIPSSLFTMPFLSYLDLGGN 303

Query:   240 SLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMF 299
             +L+G+I     ++   LE ++L +N F G I   I +L+NL  + LS  N S  I L +F
Sbjct:   304 NLSGSIEVPNSSLSSRLENLNLGENHFEGKIIEPISKLINLKELHLSFLNTSYPINLKLF 363

Query:   300 ARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK-LGLSACNISEFPDFLRSQDRLEWLQL 358
             + LK L  L LS   +S    L  +S  P  L+ L L  CNIS FP+ L++   LE++ L
Sbjct:   364 SSLKYLLLLDLSGGWIS-QASLSLDSYIPSTLEALLLKHCNISVFPNILKTLPNLEFIAL 422

Query:   359 SENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVE---QVPLKN-LRFLDLRSNLLQGSV 414
             S NKI G+IP W W + +  L ++ + +N  T  E   ++ + + +R L+L SN L+G++
Sbjct:   423 STNKISGKIPEWLWSLPR--LSSVFIEENLFTGFEGSSEILVNSSVRILNLLSNNLEGAL 480

Query:   415 MVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDL 474
               LP  + +FS  NN+  G+IP S C+   + F+DLS N+ +GPIP C   S  LI L+L
Sbjct:   481 PHLPLSVNYFSARNNRYGGDIPLSICSRRSLVFLDLSYNNFTGPIPPC--PSNFLI-LNL 537

Query:   475 HLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHW 534
               N+  GSIP      + L +L +  N+  G LP+SL NCS LQ L+V +N I DTFP  
Sbjct:   538 RKNNLEGSIPDTYYADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIKDTFPFS 597

Query:   535 LAQLPELLVLILRSNKFYGLIGNTDARVI-FPKLRILDLSRNEFTGVLPTRYFQNLKAMM 593
             L  LP+L VLIL SN FYG +   +   + FP+LRIL+++ N+FTG LP  +F+N KA  
Sbjct:   598 LKALPKLQVLILHSNNFYGPLSPPNQGSLGFPELRILEIAGNKFTGSLPPDFFENWKASS 657

Query:   594 RGSNTSTVQVQYMHR--FGRYY----SAF-FTLKGIDVEMN-ILSIFLVIDFSSNRFEGQ 645
                N         ++  +G YY     A     KG+ +E N +LS    IDFS NR EG+
Sbjct:   658 LTMNEDQGLYMVYNKVVYGTYYFTSLEAIDLQYKGLSMEQNRVLSSSATIDFSGNRLEGE 717

Query:   646 IPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLS 705
             IPE +G L  L  LN S+N  TG IP SL NL  +ESLDLSSN+L G IP  + +L+FL+
Sbjct:   718 IPESIGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLA 777

Query:   706 KLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKC--SNIDDAQEPAPRDTWS 763
              +N+SHNQL G IPQG Q       S+ GN GLCG PL + C  +N   AQ P   +   
Sbjct:   778 YMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQESCFGTNAPPAQHPKEEEEEE 837

Query:   764 W-----FDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERK 804
                    +WK   +GY  G+++G +I  +  A+ +P WLV + + +
Sbjct:   838 EEEEQVLNWKGVGIGYGVGVLLGLAIAQL-IASYKPEWLVFLFQSR 882

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 305/824 (37%), Positives = 448/824 (54%)

Query:     3 TGQVIGLD-LSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
             TG V  +  ++C  L G++ SNSSLF    L +L L  N+F SS ISS FG L  L  L 
Sbjct:    72 TGAVTKIQFMAC--LSGTLKSNSSLFQFHELRSLLLIHNNFTSSSISSKFGMLNKLEVLF 129

Query:    62 LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
             LS+S F GQ+P   S LS + +LDLS N+     S      + NL KL+ L +S    S 
Sbjct:   130 LSSSGFLGQVPFSFSNLSMLSALDLSDNELTGSLS-----FVRNLRKLRVLDVSYNHFSG 184

Query:   122 IVLDXXXXXXXXXXXXXXXXGCNLI--GPIPASLANLPQLTSLSLSYNHFSGHIPSFLSH 179
             I L+                G N      +P    NL +L  L +S N F G +P  +S+
Sbjct:   185 I-LNPNSSLFELHHLTYLSLGSNSFTSSTLPYEFGNLNKLELLDVSSNSFFGQVPPTISN 243

Query:   180 XXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGN 239
                            G +P    NLT+LS L L  N  +G +PS L  +  L  L L GN
Sbjct:   244 LTQLTELYLPLNDFTGSLP-LVQNLTKLSILALFGNHFSGTIPSSLFTMPFLSYLSLKGN 302

Query:   240 SLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMF 299
             +LNG+I     +    LE ++L  N F G I   I +L+NL  + LS  + S  I+L +F
Sbjct:   303 NLNGSIEVPNSSSSSRLESLYLGKNHFEGKILKPISKLINLKELDLSFLSTSYPIDLSLF 362

Query:   300 ARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK-LGLSACNISEFPDFLRSQDRLEWLQL 358
             +  K+L  L L+ + +S    L ++S     L+ L +  CNIS+FP+ L+S   LE + +
Sbjct:   363 SSFKSLLVLDLTGDWIS-QAGLSSDSYISLTLEALYMKQCNISDFPNILKSLPNLECIDV 421

Query:   359 SENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVE---QVPLKN-LRFLDLRSNLLQGSV 414
             S N++ G+IP W W + +  L ++ + DN LT  E   ++ + + ++ L L SN L+G++
Sbjct:   422 SNNRVSGKIPEWLWSLPR--LSSVFIGDNLLTGFEGSSEILVNSSVQILVLDSNSLEGAL 479

Query:   415 MVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDL 474
               LP  +I+FS   N+  G+IP S C  + ++ +DL  N+ +GPIP CL +   L++L+L
Sbjct:   480 PHLPLSIIYFSARYNRFKGDIPLSICNRSSLDVLDLRYNNFTGPIPPCLSN---LLFLNL 536

Query:   475 HLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHW 534
               N+  GSIP      + L +L +  N+  G LP+SL NCS LQ L+V +N I+DTFP +
Sbjct:   537 RKNNLEGSIPDTYFADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIEDTFPFY 596

Query:   535 LAQLPELLVLILRSNKFYGLIGNTDARVI-FPKLRILDLSRNEFTGVLPTRYFQNLKA-- 591
             L  LP+L VL+L SNKFYG +   +   + FP+LRIL+++ N+ TG LP  +F N KA  
Sbjct:   597 LKVLPKLQVLLLSSNKFYGPLSPPNQGSLGFPELRILEIAGNKLTGSLPQDFFVNWKASS 656

Query:   592 MMRGSNTSTVQVQYMHRFGRYYSAFF-TL----KGIDVEMN-ILSIFLVIDFSSNRFEGQ 645
             +    +     V     +G YY ++  T+    KG+ +E   +L+    ID S NR EG+
Sbjct:   657 LTMNEDQGLYMVYSKVVYGIYYLSYLATIDLQYKGLSMEQKWVLTSSATIDLSGNRLEGE 716

Query:   646 IPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLS 705
             IPE +G L  L  LN S+N  TG IP SL NL  +ESLDLSSN+L G IP  L +L+FL+
Sbjct:   717 IPESIGLLKALIALNLSNNAFTGHIPLSLANLVKIESLDLSSNQLSGTIPNGLGTLSFLA 776

Query:   706 KLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKC--SNIDDA---QEPAPRD 760
              +N+SHNQL G IPQG Q       S+ GN GLCG PL  +C  +N   A   +E    +
Sbjct:   777 YVNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQQRCFGTNAPPAHQFKEEEDEE 836

Query:   761 TWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERK 804
                  +W+   +GY  G+++G +I  +  A+ +P WL  +++ +
Sbjct:   837 QEQVLNWEGVAIGYGVGVLLGLAIAQL-IASYKPEWLACLIKSR 879

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 312/834 (37%), Positives = 438/834 (52%)

Query:     6 VIGLDLSCSWLHG--SIPSNSSLFL-LPYLETLNLGSNDFNSSLISSG----FGRLISLT 58
             ++ LDLS S+ +   S+     LFL L  L  +NL   D +S  ISS     F  + SL 
Sbjct:   174 LVSLDLSSSFPYSPSSLSIEKPLFLHLLALNFMNLRELDMSSVDISSAIPIEFSYMWSLR 233

Query:    59 HLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVD 118
              L L      G+ P+ +  +  + S+ L  N  + +E  +    + N + LK L +    
Sbjct:   234 SLTLKGCNLLGRFPNSVLLIPNLESISLDHN--LNLEGSL-PNFLRNNSLLK-LSIYNTS 289

Query:   119 MSTIVLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLS 178
              S  + +                  +  G IP+SL +L  L++L LS N+F G IPS +S
Sbjct:   290 FSGTIPNSISNLKHLTSLKLQQSAFS--GRIPSSLRSLSHLSNLVLSENNFVGEIPSSVS 347

Query:   179 HXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSG 238
             +               G  P S +NL QL ++D+  N  TG LP  +  L NL       
Sbjct:   348 NLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTISQLSNLEFFSACD 407

Query:   239 NSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIP-STIFELVNLTSIRLSSNNL-SGHIEL 296
             NS  G+IPS LF +   L  + L  N+   +     I  L NL  + L +NN  +  ++L
Sbjct:   408 NSFTGSIPSSLFNISS-LTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDNNNFKASQVDL 466

Query:   297 CMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK-LGLSACNISEFPDFLRSQDRLEW 355
              +F  LK L  L LS   LS  T + ++S F   L+ L LS CNI EFP+F+R+Q  L  
Sbjct:   467 DVFLSLKRLVSLALSGIPLST-TNITSDSEFSSHLEYLELSGCNIIEFPEFIRNQRNLSS 525

Query:   356 LQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLT----DVEQVPLKNLRFLDLRSNLLQ 411
             + LS N I G++PNW W + +  L  ++LS+N L      ++ +    +  LDL SN  Q
Sbjct:   526 IDLSNNNIKGQVPNWLWRLPE--LSTVDLSNNSLIGFNGSLKALSGSKIVMLDLSSNAFQ 583

Query:   412 GSVMVLPPRLI-FFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT-L 469
             G +  +PPR I +F  S N  TG IP S C  A    +DLSNN+L G IP CL   ++ L
Sbjct:   584 GPLF-MPPRGIQYFLGSYNNFTGYIPPSICGLANPLILDLSNNNLHGLIPRCLEAQMSSL 642

Query:   470 IWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDD 529
               L+L  NS +GS+P I  N   L +L ++ N  EG LP SLA CS L++LNV +N I+D
Sbjct:   643 SVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVESNNIND 702

Query:   530 TFPHWLAQLPELLVLILRSNKFYGLIGNTDARVI-FPKLRILDLSRNEFTGVLPTRYFQN 588
             TFP WL  LP+L VL+LRSN F G + N D     FP LRI D+S N+F G LP+ YF N
Sbjct:   703 TFPFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFVGTLPSDYFMN 762

Query:   589 LKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMN-ILSIFLVIDFSSNRFEGQIP 647
               A+ + S T    +     +G Y S     KG+ +EM  IL+ + VIDF+ N+ +G+IP
Sbjct:   763 WTAISK-SETELQYIGDPEDYGYYTSLVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIP 821

Query:   648 EVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKL 707
             E VG L  L +LN S N  TG IPSSL NLT LESLD+S N++ G+IP +L +L+ L  +
Sbjct:   822 ESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWI 881

Query:   708 NLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPA---PRDTWS- 763
             N+SHNQL G IPQG QF+     SY GN G+ G  L D C +I   + P    P  + S 
Sbjct:   882 NVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIHAPRPPQAVLPHSSSSS 941

Query:   764 -----WFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIRRQSTR 812
                     W  A +G+A G+V G ++GY+   + +  W +    R++ R   TR
Sbjct:   942 SEEDELISWIAACLGFAPGMVFGLTMGYI-MTSHKHEWFMDTFGRRKGRSTRTR 994

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
 Identities = 273/683 (39%), Positives = 383/683 (56%)

Query:   149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFV-NLTQL 207
             +P+   NL +L  L LS N F G +PS  S+               G  P  FV NLT+L
Sbjct:   114 LPSGFGNLNRLEVLYLSSNGFLGQVPSSFSNLSQLNILDLSHNELTGSFP--FVQNLTKL 171

Query:   208 SFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267
             S L LS+N  +G +PS L  L  L +L L  N L G+I +   +    LE ++L +N F 
Sbjct:   172 SILVLSYNHFSGTIPSSLLTLPFLSSLDLRENYLTGSIEAPNSSTSSRLEFMYLGNNHFE 231

Query:   268 GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTF 327
             G I   I +L+NL  + LS    S  I+L +F+  K+L  L LS N L + T + ++S  
Sbjct:   232 GQILEPISKLINLKHLDLSFLKTSYPIDLNLFSSFKSLVRLVLSGNSL-LATSITSDSKI 290

Query:   328 P-KLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD 386
             P  L  L L +C + EFP  L++  +LE + LS NKI G++P WFW++ +  L  +NL +
Sbjct:   291 PLNLENLVLLSCGLIEFPTILKNLTKLEHIDLSNNKIKGKVPEWFWNLPR--LRRVNLFN 348

Query:   387 NFLTDVE--QVPLKN--LRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTA 442
             N  TD+E  +  L N  +R LDL  N  +G     P  +   S  NN  TG IP   C  
Sbjct:   349 NLFTDLEGSEEVLVNSSVRLLDLAYNHFRGPFPKPPLSINLLSAWNNSFTGNIPLETCNR 408

Query:   443 APIEFIDLSNNSLSGPIPECLVD-SITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDN 501
             + +  +DLS N+L+GPIP CL D   +LI ++L  N+  GS+P I ++G+ L  L +  N
Sbjct:   409 SSLAILDLSYNNLTGPIPRCLSDFQESLIVVNLRKNNLEGSLPDIFSDGALLRTLDVGYN 468

Query:   502 QFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTD-A 560
             Q  G LP+SL NCS L+ ++V +N+I DTFP WL  LP+L  L LRSNKF+G I   D  
Sbjct:   469 QLTGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWLKALPDLQALTLRSNKFHGPISPPDRG 528

Query:   561 RVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGR-YYSAFFTL 619
              + FPKLRIL++S N FTG LP  YF N +A     N    ++ YM  +   YY    T+
Sbjct:   529 PLAFPKLRILEISDNNFTGSLPPNYFVNWEASSLQMNEDG-RI-YMGDYNNPYYIYEDTV 586

Query:   620 ----KGIDVEMN-ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSL 674
                 KG+ +E   +L+ +  IDFS N+ EGQIPE +G L  L  LN S+N  TG IP SL
Sbjct:   587 DLQYKGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSL 646

Query:   675 RNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIG 734
              N+T LESLDLS N+L G IP  L +L+FL+ ++++HNQL G IPQG Q       S+ G
Sbjct:   647 ANVTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEG 706

Query:   735 NLGLCGFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRP 794
             N GLCG PL   C      Q     +     +WK  ++GY  GL++G  + ++  A+ +P
Sbjct:   707 NAGLCGLPLQGSCFAPPTPQPKEEDEDEEVLNWKAVVIGYWPGLLLGLIMAHV-IASFKP 765

Query:   795 RWLVRMV-ERKRIRRQSTRIFLS 816
             +WLV++V   KR      R+F++
Sbjct:   766 KWLVKIVGPEKRKEDNPVRLFMT 788

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 293/801 (36%), Positives = 420/801 (52%)

Query:    22 SNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKM 81
             S  ++ +L   + L+ G+   NSSL   GF +L  L  LN  N++ S  +PSE   L+K+
Sbjct:    74 STGAVTVLQLRDCLS-GTLKSNSSLF--GFHQLRYLA-LN-RNNFTSASLPSEFCNLNKL 128

Query:    82 LSLDLSKNDEVRIESPVWKG---LIENLTKLKELVLSEVDMSTIVLDXXXXXXXXXXXXX 138
               L L  N  + +      G   L+ NL KL  L LS+   S  +               
Sbjct:   129 KLLSLFSNGFIDLSHNDLMGSFPLVRNLGKLAVLDLSDNHFSGTLNPNNSLFELHSLRYL 188

Query:   139 XXXGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIP 198
                  N+   +P+   NL +L  LSLS+N FSG     +S+               G  P
Sbjct:   189 NLAFNNISSSLPSKFGNLNKLEVLSLSFNGFSGQCFPTISNLTRITQLYLHNNELTGSFP 248

Query:   199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
                 NLT+LSFL LS N  +G +PS L    +L TL L  N L+G+I     +    LE+
Sbjct:   249 -LVQNLTKLSFLGLSDNLFSGTIPSYLFTFPSLSTLDLRENDLSGSIEVPNSSTSSKLEI 307

Query:   259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
             ++L  N   G I   I +L+NL  + LS  N S  I+L + + LK+L YL  S N LS  
Sbjct:   308 MYLGFNHLEGKILEPISKLINLKRLDLSFLNTSYPIDLNLLSPLKSLSYLDFSGNSLSP- 366

Query:   319 TKLDANSTFPKLLK-LGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKD 377
               L ++S  P  ++ + LS C I EFP+ L+    L  + ++ N+I G+IP W W + + 
Sbjct:   367 ASLSSSSYIPLSMESIVLSLCGIREFPNILKHLQNLIHIDITSNQIKGKIPEWLWTLPQL 426

Query:   378 TLYNL--NLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEI 435
             +  ++  N  + F    E     ++R L L +N  +G++  LP  +I FS  +N  TGEI
Sbjct:   427 SFVDISNNSFNGFQGSAEVFVNLSVRILMLDANNFEGALPTLPLSIIGFSAIHNSFTGEI 486

Query:   436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
             P S C    +  +DLS N+ +GPIP+CL +    ++++L  N   GSIP      S L +
Sbjct:   487 PLSICNRTSLTMVDLSYNNFTGPIPQCLSN---FMFVNLRKNDLEGSIPDTFYTDSSLKS 543

Query:   496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
             L +  N+  G LP+SL NCS L+ L+V NNR+ DTFP WL  LP L VL LRSNKFYG I
Sbjct:   544 LDVGYNRLTGKLPRSLLNCSSLRFLSVDNNRVKDTFPFWLKALPNLRVLTLRSNKFYGPI 603

Query:   556 GNTDARVI-FPKLRILDLSRNEFTGVLPTRYFQNLKA--MMRGSNTSTVQVQYMHRFG-- 610
                    + FP+LRI +++ N FTG LP  +F N KA  + +  +     V    +    
Sbjct:   604 SPPHQGPLGFPELRIFEIADNMFTGSLPPSFFVNWKASALTKNEDGGLYMVYEYDKAANS 663

Query:   611 --RY-YSAFFTL--KGIDVEMN-ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHN 664
               RY Y+    L  KG+ +E   +L+ +  IDFS NR +GQIPE +G L  L  LN S+N
Sbjct:   664 PVRYTYTDTIDLQYKGLHMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNN 723

Query:   665 HLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQF 724
               TG IP S  NL  LESLD+S N+L G IP  L SL+FL  ++++HN+L+G IPQG Q 
Sbjct:   724 AFTGHIPLSFANLMNLESLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQI 783

Query:   725 NTFQSDSYIGNLGLCGFPLSDKC--SNIDDAQEPAPRDTWSW--FDWKVAMMGYASGLVI 780
                   S+ GN GLCG PL + C  S++   Q P   D       +WK   +GYA GL+ 
Sbjct:   784 TGQIKSSFEGNAGLCGLPLQETCFDSSVPPIQ-PKQEDEEKGEVINWKAVAIGYAPGLLF 842

Query:   781 GFSIGYMAFATGRPRWLVRMV 801
             G +I ++  A+ +P WLV+++
Sbjct:   843 GLAIAHL-IASYKPEWLVKII 862

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
 Identities = 306/844 (36%), Positives = 424/844 (50%)

Query:     9 LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
             LDL+ + L G IPS  S+  L +L +L+L  N F   LI S    L  LT L+LS++ FS
Sbjct:   130 LDLTQNDLDGEIPS--SIGNLSHLTSLHLSYNQF-LGLIPSSIENLSRLTSLHLSSNQFS 186

Query:    69 GQIPSEISQLSKMLSLDLSKND-EVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDXX 127
             GQIPS I  LS + SL+LS N    +I S +  G + NLT L    L   D    +    
Sbjct:   187 GQIPSSIGNLSHLTSLELSSNQFSGQIPSSI--GNLSNLTFLS---LPSNDFFGQIPSSI 241

Query:   128 XXXXXXXXXXXXXXGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHXXXXXXXX 187
                             N +G IP+S  NL QL  L +  N  SG++P  L +        
Sbjct:   242 GNLARLTYLYLSYN--NFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALL 299

Query:   188 XXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
                    G IP++   L+ L   + S N  TG LPS L  +  L+ L LS N LNGT+  
Sbjct:   300 LSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLHF 359

Query:   248 WLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGH-IELCMFARLKNLQ 306
                +    L+ + +  N F G+IP ++   VNLT   LS  N     ++  +F+ LK+L 
Sbjct:   360 GNISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCRPVDFSIFSHLKSLD 419

Query:   307 -----YL------------Y--------LSQNRLSVNTKLDANSTFPK--LLKLGLSACN 339
                  YL            Y        +S N +S   K   +S  P   +  L LS C 
Sbjct:   420 DLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSLYLSGCG 479

Query:   340 ISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKN 399
             I++FP+ LR+Q  L +L +S NKI G++P W W +    L+ LNLS+N     E    K+
Sbjct:   480 ITDFPEILRTQHELGFLDVSNNKIKGQVPGWLWTL--PNLFYLNLSNNTFISFESSSKKH 537

Query:   400 LRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPI 459
                         G   V  P +I    SNN  TG+IP   C    +  +DLS N+ +G I
Sbjct:   538 ------------GLSSVRKPSMIHLFASNNNFTGKIPSFICGLRSLNTLDLSENNYNGSI 585

Query:   460 PECLVD-SITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQ 518
             P C+     TL  L+L  N+ +G +P+       L +L +  N   G LP+SL   S L+
Sbjct:   586 PRCMEKLKSTLFVLNLRQNNLSGGLPKHIFES--LRSLDVGHNLLVGKLPRSLIRFSNLE 643

Query:   519 VLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFT 578
             VLNV +NRI+DTFP WL+ L +L VL+LRSN F+G I        FP+LRI+D+S N F 
Sbjct:   644 VLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPIHEAT----FPELRIIDISHNHFN 699

Query:   579 GVLPTRYFQNLKAMMR-GSNTSTVQVQYMHRFGRYYSAFFTL--KGIDVEM-NILSIFLV 634
             G LPT YF    AM   G N      +YM   G YY     L  KG+ +E+  IL+I+  
Sbjct:   700 GTLPTEYFVKWSAMSSLGKNEDQSNEKYMGS-GLYYQDSMVLMNKGLAMELVRILTIYTA 758

Query:   635 IDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQI 694
             +DFS N+FEG+IP+ +G L  L +LN S+N   G IPSS+ NLT LESLD+S N+L G+I
Sbjct:   759 LDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEI 818

Query:   695 PTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKC------- 747
             P +L  L+FL+ +N SHNQL G +P G QF      ++  NLGL G  L + C       
Sbjct:   819 PQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPA 878

Query:   748 SNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRMVERKRIR 807
             S  ++  E    D      W  A +G+  G+V G +IGY+   + +P W +    R   R
Sbjct:   879 SQQNETTETEEEDEEE-ISWIAAAIGFIPGIVFGLTIGYI-LVSYKPEWFMNPFGRNNRR 936

Query:   808 RQST 811
             R++T
Sbjct:   937 RRNT 940

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	816
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-73
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-63
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  256 bits (656), Expect = 7e-73
 Identities = 209/682 (30%), Positives = 310/682 (45%), Gaps = 92/682 (13%)

Query: 130 NLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHL-KQLYYLNL 188
           N SS +  + L+G N+ G I +++  LP + +++LS N  SG IP  +      L YLNL
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW 248
             NN  G IP   +    L  LDLS N L+G +P+ +    +L  L L GN L G IP+ 
Sbjct: 126 SNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 249 LFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL 308
           L T L  LE + L  N+  G IP  + ++ +L  I L  NNLSG I       L +L +L
Sbjct: 184 L-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHL 241

Query: 309 YLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP 368
            L  N L+                           P  L +   L++L L +NK+ G IP
Sbjct: 242 DLVYNNLT------------------------GPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Query: 369 NWFWDIGKDTLYNLNLSDNFLTDVEQVP-----LKNLRFLDLRSNLLQGSVMVLP---PR 420
              + + K  L +L+LSDN L+   ++P     L+NL  L L SN   G + V     PR
Sbjct: 278 PSIFSLQK--LISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 421 LIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFN 480
           L    + +NK +GEIP +      +  +DLS N+L+G IPE L  S  L  L L  NS  
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 481 GSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPE 540
           G IP+       L  + L DN F G LP        +  L+++NN +          +P 
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 541 LLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTST 600
           L +L L  NKF+G + ++       +L  LDLSRN+F+G +P +   +L  +M+      
Sbjct: 454 LQMLSLARNKFFGGLPDSFGS---KRLENLDLSRNQFSGAVPRK-LGSLSELMQ------ 503

Query: 601 VQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLN 660
                                             +  S N+  G+IP+ +     L  L+
Sbjct: 504 ----------------------------------LKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 661 FSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ 720
            SHN L+G+IP+S   + VL  LDLS N+L G+IP  L ++  L ++N+SHN L G +P 
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Query: 721 GPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVI 780
              F    + +  GN+ LCG    D  S +   +      +W WF     +  +    ++
Sbjct: 590 TGAFLAINASAVAGNIDLCG---GDTTSGLPPCKRVRKTPSW-WFYITCTLGAFLVLALV 645

Query: 781 GFSIGYMAFATGRPRWLVRMVE 802
            F      F  GR    ++ VE
Sbjct: 646 AFGF---VFIRGRNNLELKRVE 664

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  229 bits (585), Expect = 3e-63
 Identities = 189/567 (33%), Positives = 278/567 (49%), Gaps = 55/567 (9%)

Query: 5   QVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSN 64
           +V+ +DLS   + G I  +S++F LPY++T+NL +N  +  +    F    SL +LNLSN
Sbjct: 70  RVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 65  SYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVL 124
           + F+G IP     +  + +LDLS N+ +  E P   G   +L  L        D+   VL
Sbjct: 128 NNFTGSIPR--GSIPNLETLDLS-NNMLSGEIPNDIGSFSSLKVL--------DLGGNVL 176

Query: 125 ----DYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHL 180
                 SLTNL+S L +L L    L+G IP  L  +  L  + L YN+ SG IP  +  L
Sbjct: 177 VGKIPNSLTNLTS-LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 181 KQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNS 240
             L +L+L  NNL G IP S  NL  L +L L  N+L+G +P  +  L+ L++L LS NS
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 241 LNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFA 300
           L+G IP  L   L  LE++HL  N FTG IP  +  L  L  ++L SN  SG I      
Sbjct: 296 LSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP----- 349

Query: 301 RLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNIS-EFPDFLRSQDRLEWLQLS 359
             KNL       N L+V               L LS  N++ E P+ L S   L  L L 
Sbjct: 350 --KNLG----KHNNLTV---------------LDLSTNNLTGEIPEGLCSSGNLFKLILF 388

Query: 360 ENKIYGRIPNWFWD---IGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMV 416
            N + G IP        + +  L + + S    ++  ++PL    FLD+ +N LQG +  
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY--FLDISNNNLQGRINS 446

Query: 417 LP---PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLD 473
                P L   S++ NK  G +P SF  +  +E +DLS N  SG +P  L     L+ L 
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLK 505

Query: 474 LHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPH 533
           L  N  +G IP   ++   LV+L L+ NQ  G +P S +    L  L+++ N++    P 
Sbjct: 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 534 WLAQLPELLVLILRSNKFYGLIGNTDA 560
            L  +  L+ + +  N  +G + +T A
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLPSTGA 592

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 1e-14
 Identities = 43/107 (40%), Positives = 52/107 (48%), Gaps = 14/107 (13%)

Query: 644 GQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNF 703
           G IP  + KL  L+ +N S N + G IP SL ++T LE LDLS N   G IP  L  L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 704 LSKLNLSHNQLEGPIP--------QGPQFNTFQSDSYIGNLGLCGFP 742
           L  LNL+ N L G +P            FN      +  N GLCG P
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 36/88 (40%), Positives = 51/88 (57%)

Query: 162 LSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRL 221
           L L      G IP+ +S L+ L  +NL  N++ G IP S  ++T L  LDLS+N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 222 PSCLKGLRNLVTLRLSGNSLNGTIPSWL 249
           P  L  L +L  L L+GNSL+G +P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 6e-10
 Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 210 LDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS 269
           L L    L G +P+ +  LR+L ++ LSGNS+ G IP  L ++   LEV+ L  N F GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 270 IPSTIFELVNLTSIRLSSNNLSGHIELCMFARL 302
           IP ++ +L +L  + L+ N+LSG +   +  RL
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 36/91 (39%), Positives = 50/91 (54%)

Query: 138 LHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGI 197
           L L    L G IP  ++ L  L S++LS N   G+IP  L  +  L  L+L  N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGL 228
           P+S   LT L  L+L+ N L+GR+P+ L G 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.4 bits (141), Expect = 6e-09
 Identities = 82/288 (28%), Positives = 113/288 (39%), Gaps = 35/288 (12%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
           SL+ L   +      I S     + +  L L   D            +  LT L  L L 
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLD 124

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS 175
             +++ I     +  L S+L  L L   N I  +P+ L NLP L +L LS+N  S  +P 
Sbjct: 125 NNNITDIPP--LIGLLKSNLKELDL-SDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPK 180

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLR 235
            LS+L  L  L+L   N +  +P     L+ L  LDLS N +   L S L  L+NL  L 
Sbjct: 181 LLSNLSNLNNLDL-SGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE 238

Query: 236 LSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIE 295
           LS N L                            +P +I  L NL ++ LS+N +S    
Sbjct: 239 LSNNKLE--------------------------DLPESIGNLSNLETLDLSNNQIS---S 269

Query: 296 LCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEF 343
           +     L NL+ L LS N LS    L A       L L L     +  
Sbjct: 270 ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE 317

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 28/66 (42%), Positives = 39/66 (59%)

Query: 135 LSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLV 194
           L  ++L+G ++ G IP SL ++  L  L LSYN F+G IP  L  L  L  LNL  N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 195 GGIPDS 200
           G +P +
Sbjct: 504 GRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 4e-08
 Identities = 34/87 (39%), Positives = 44/87 (50%)

Query: 425 SISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIP 484
            + N  L G IP        ++ I+LS NS+ G IP  L    +L  LDL  NSFNGSIP
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 485 QISANGSGLVNLILNDNQFEGPLPQSL 511
           +     + L  L LN N   G +P +L
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 77/312 (24%), Positives = 107/312 (34%), Gaps = 64/312 (20%)

Query: 210 LDLSWNQL-TGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY---LEVIHLRDN- 264
           L L    L T R    L  L  L  LRL GN+L       L + L     L+ + L  N 
Sbjct: 3   LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE 62

Query: 265 -----RFTGSIPSTIFELVNLTSIRLSSNNLSGH----IELCMFARLKNLQYLYLSQNRL 315
                R   S+   + +   L  + LS N L       +E  +  R  +LQ L L+ N L
Sbjct: 63  TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL--RSSSLQELKLNNNGL 120

Query: 316 SVN-TKLDANS---TFPKLLKLGLSACNIS-----EFPDFLRSQDRLEWLQLSENKIYGR 366
                +L A       P L KL L    +           LR+   L+ L L+ N I   
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

Query: 367 IPNWFWDIGKDT--LYNLNLSDNFLTDVEQVPL-------KNLRFLDLRSNLLQGSVMVL 417
                 +  K    L  L+L++N LTD     L       K+L  L+L            
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL------------ 228

Query: 418 PPRLIFFSISNNKLTGEIPCSFCTAAPIEFI-----DLSNNSL--SGPIPECLV--DSIT 468
                     +N LT     +  +A     I      LS N +   G      V  +  +
Sbjct: 229 ---------GDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279

Query: 469 LIWLDLHLNSFN 480
           L+ LDL  N F 
Sbjct: 280 LLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 5e-07
 Identities = 83/239 (34%), Positives = 110/239 (46%), Gaps = 41/239 (17%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           LDL+ + L  +I   S L  L  L +L+L +N+     I      LI L   NL      
Sbjct: 98  LDLNLNRLRSNI---SELLELTNLTSLDLDNNNITD--IPP----LIGLLKSNLKE---- 144

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSL 128
                          LDLS N    + SP     + NL  LK L LS  D+S +     L
Sbjct: 145 ---------------LDLSDNKIESLPSP-----LRNLPNLKNLDLSFNDLSDL---PKL 181

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
            +  S+L+ L L+G N I  +P  +  L  L  L LS N     + S LS+LK L  L L
Sbjct: 182 LSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
             NN +  +P+S  NL+ L  LDLS NQ++    S L  L NL  L LSGNSL+  +P 
Sbjct: 240 -SNNKLEDLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 621 GIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSL 674
            I   +  ++   V+D S N F G IPE +G+L  L++LN + N L+GR+P++L
Sbjct: 457 NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 659 LNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPI 718
           L   +  L G IP+ +  L  L+S++LS N + G IP  L S+  L  L+LS+N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 719 PQ 720
           P+
Sbjct: 483 PE 484

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 256 LEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNR 314
           L+ + L +NR T  IP   F+ L NL  + LS NNL+  I    F+ L +L+ L LS N 
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 315 L 315
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 23/60 (38%), Positives = 27/60 (45%)

Query: 158 QLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQL 217
            L SL LS N  +         L  L  L+L  NNL    P++F  L  L  LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 23/59 (38%), Positives = 30/59 (50%)

Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714
           LK L+ S+N LT     + + L  L+ LDLS N L    P   + L  L  L+LS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 30/118 (25%)

Query: 60  LNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDM 119
           L L N    G IP++IS+L  + S++LS N  +R   P   G I +L             
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLE------------ 469

Query: 120 STIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFL 177
              VLD S  + +              G IP SL  L  L  L+L+ N  SG +P+ L
Sbjct: 470 ---VLDLSYNSFN--------------GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 25/60 (41%), Positives = 30/60 (50%)

Query: 182 QLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL 241
            L  L+L  N L      +F  L  L  LDLS N LT   P    GL +L +L LSGN+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 461 ECLVDSITLIW----LDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSR 516
           +C  DS    W    L L      G IP   +    L ++ L+ N   G +P SL + + 
Sbjct: 408 DCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS 467

Query: 517 LQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYG 553
           L+VL+++ N  + + P  L QL  L +L L  N   G
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 47.4 bits (112), Expect = 3e-05
 Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 55/287 (19%)

Query: 269 SIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFP 328
           +IP+ I E   +T++ L +N L    E        N++ LY + N+L   T + A  T P
Sbjct: 192 TIPACIPE--QITTLILDNNELKSLPENLQ----GNIKTLYANSNQL---TSIPA--TLP 240

Query: 329 KLLK-LGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDN 387
             ++ + LS   I+E P+ L S   L+ L L  NKI   +P    +   + L  L++ DN
Sbjct: 241 DTIQEMELSINRITELPERLPSA--LQSLDLFHNKISC-LP----ENLPEELRYLSVYDN 293

Query: 388 FLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEF 447
            +  +       +  L+++SN L      LPP L       N LT  +P S      ++ 
Sbjct: 294 SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLPPE--LQV 350

Query: 448 IDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPL 507
           +D+S N ++  +PE L  +IT + +                      N + N       L
Sbjct: 351 LDVSKNQIT-VLPETLPPTITTLDVSR--------------------NALTN-------L 382

Query: 508 PQSLANCSRLQVLNVANN---RIDDTFPHWLAQLPELLVLILRSNKF 551
           P++L   + LQ++  + N   R+ ++ PH+  + P+   +I+  N F
Sbjct: 383 PENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 437 CSFCTAAPIEFID---LSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGL 493
           C F +     FID   L N  L G IP  +     L  ++L  NS  G+IP    + + L
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468

Query: 494 VNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLP 539
             L L+ N F G +P+SL   + L++LN+  N +    P  L    
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 4e-05
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 8   GLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYF 67
           GL L    L G IP++ S   L +L+++NL S +     I    G + SL  L+LS + F
Sbjct: 422 GLGLDNQGLRGFIPNDISK--LRHLQSINL-SGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 68  SGQIPSEISQLSKMLSLDLSKN 89
           +G IP  + QL+ +  L+L+ N
Sbjct: 479 NGSIPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 53/256 (20%), Positives = 84/256 (32%), Gaps = 43/256 (16%)

Query: 4   GQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLS 63
           G  +G + +   L  ++    SL  L  L     G        +  G  +   L  L+LS
Sbjct: 32  GNTLG-EEAAKALASALRPQPSLKEL-CLSLNETGRIPRGLQSLLQGLTKGCGLQELDLS 89

Query: 64  NSYFSGQIPSEISQLSKMLSL-DLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTI 122
           ++         +  L +  SL +L  N+                           D    
Sbjct: 90  DNALGPDGCGVLESLLRSSSLQELKLNNN-----------------------GLGDRGLR 126

Query: 123 VLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANL----PQLTSLSLSYNHFSG----HIP 174
           +L   L +L  +L  L L    L G    +LA        L  L+L+ N         + 
Sbjct: 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186

Query: 175 SFLSHLKQLYYLNLEQNNL----VGGIPDSFVNLTQLSFLDLSWNQLTGR-----LPSCL 225
             L     L  L+L  N L       + ++  +L  L  L+L  N LT         + L
Sbjct: 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246

Query: 226 KGLRNLVTLRLSGNSL 241
               +L+TL LS N +
Sbjct: 247 SPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 15/203 (7%)

Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
            NR   +I S + EL NLTS+ L +NN++  I   +     NL+ L LS N++   +   
Sbjct: 102 LNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE--SLPS 157

Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
                P L  L LS  ++S+ P  L +   L  L LS NKI   +P    +I   + L  
Sbjct: 158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI-SDLPP---EIELLSALEE 213

Query: 382 LNLSDNFLTDVEQV--PLKNLRFLDLRSNLLQGSVMVL--PPRLIFFSISNNKLTGEIPC 437
           L+LS+N + ++      LKNL  L+L +N L+     +     L    +SNN+++  I  
Sbjct: 214 LDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SIS- 271

Query: 438 SFCTAAPIEFIDLSNNSLSGPIP 460
           S  +   +  +DLS NSLS  +P
Sbjct: 272 SLGSLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 70/255 (27%), Positives = 107/255 (41%), Gaps = 44/255 (17%)

Query: 98  VWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLP 157
           +W G + +LT L+ + L        + D S+   +++L  L L+ C+ +  +P+S+  L 
Sbjct: 626 LWDG-VHSLTGLRNIDLRGSKNLKEIPDLSM---ATNLETLKLSDCSSLVELPSSIQYLN 681

Query: 158 QLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQL 217
           +L  L +S       +P+ ++ LK LY LNL   + +   PD   N   +S+LDL    +
Sbjct: 682 KLEDLDMSRCENLEILPTGIN-LKSLYRLNLSGCSRLKSFPDISTN---ISWLDLDETAI 737

Query: 218 TGRLPSCLKGLRNLVTLRL----SGNSLNGTIP-SWLFTVL-PYLEVIHLRDNRFTGSIP 271
               PS L+ L NL  L L    S        P + L T+L P L  + L D      +P
Sbjct: 738 E-EFPSNLR-LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795

Query: 272 STIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLL 331
           S+I  L  L  +          IE C      NL+ L    N                L 
Sbjct: 796 SSIQNLHKLEHL---------EIENC-----INLETLPTGIN-------------LESLE 828

Query: 332 KLGLSACN-ISEFPD 345
            L LS C+ +  FPD
Sbjct: 829 SLDLSGCSRLRTFPD 843

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           ++LS + + G+IP   SL  +  LE L+L  N FN S I    G+L SL  LNL+ +  S
Sbjct: 447 INLSGNSIRGNIPP--SLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLS 503

Query: 69  GQIPSEI 75
           G++P+ +
Sbjct: 504 GRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 134 SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNL 193
           +L  L L+   L      +   LP L  L LS N+ +   P   S L  L  L+L  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 22/57 (38%), Positives = 28/57 (49%)

Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRL 690
            +D S+NR           L  LK+L+ S N+LT   P +   L  L SLDLS N L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 500 DNQ-FEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNT 558
           DNQ   G +P  ++    LQ +N++ N I    P  L  +  L VL L  N F G I  +
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 559 DARVIFPKLRILDLSRNEFTGVLP 582
             ++    LRIL+L+ N  +G +P
Sbjct: 486 LGQLT--SLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 42.4 bits (99), Expect = 9e-04
 Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 45/224 (20%)

Query: 377 DTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIP 436
           + +  L L +N L  + +    N++ L   SN L      LP  +    +S N++T E+P
Sbjct: 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELP 257

Query: 437 -------------CSFCTAAP------IEFIDLSNNSLSGPIPECLVDSITLIWLDLHLN 477
                         +  +  P      + ++ + +NS+   +P  L   IT      HLN
Sbjct: 258 ERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRT-LPAHLPSGIT------HLN 310

Query: 478 SFNGSIPQISAN-GSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID---DTFPH 533
             + S+  +      GL  L   +N     LP SL     LQVL+V+ N+I    +T P 
Sbjct: 311 VQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETLP- 366

Query: 534 WLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEF 577
                P +  L +  N    L  N  A      L+I+  SRN  
Sbjct: 367 -----PTITTLDVSRNALTNLPENLPA-----ALQIMQASRNNL 400

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNN 289
           NL +L LS N L        F  LP L+V+ L  N  T   P     L +L S+ LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGA-FKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 290 L 290
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 279 NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANS--TFPKLLKLGLS 336
           NL S+ LS+N L+  I    F  L NL+ L LS N L+    +   +    P L  L LS
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTS---ISPEAFSGLPSLRSLDLS 56

Query: 337 ACNI 340
             N+
Sbjct: 57  GNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	816
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PLN03150	623	hypothetical protein; Provisional	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.52
PLN03150	623	hypothetical protein; Provisional	99.3
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.69
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.45
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.26
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG4341	483	consensus F-box protein containing LRR [General fu	98.21
KOG4341	483	consensus F-box protein containing LRR [General fu	98.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.43
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.38
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.46
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.36
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.76
KOG4308	478	consensus LRR-containing protein [Function unknown	94.93
KOG4308	478	consensus LRR-containing protein [Function unknown	92.97
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.63
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.87
smart00370	26	LRR Leucine-rich repeats, outliers.	89.87
smart00370	26	LRR Leucine-rich repeats, outliers.	86.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.94
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.53
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.39
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.67
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.91

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.8e-64  Score=608.74  Aligned_cols=543  Identities=35%  Similarity=0.555  Sum_probs=385.0

Q ss_pred             CCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhh-cCCCCCEEeCCCCCCccccCCcHHHHhhcCC
Q 003488           29 LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEIS-QLSKMLSLDLSKNDEVRIESPVWKGLIENLT  107 (816)
Q Consensus        29 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~  107 (816)
                      ..+++.|+|+++.+++. ++..|..+++|++|+|++|.+++.+|..+. .+++|++|++++|.+.....           
T Consensus        68 ~~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-----------  135 (968)
T PLN00113         68 SSRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-----------  135 (968)
T ss_pred             CCcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-----------
Confidence            45789999999988876 678899999999999999999888887665 78888888888875542111           


Q ss_pred             CCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEE
Q 003488          108 KLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN  187 (816)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  187 (816)
                                       .   ..+ ++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+.++++|++|+
T Consensus       136 -----------------~---~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  194 (968)
T PLN00113        136 -----------------R---GSI-PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT  194 (968)
T ss_pred             -----------------c---ccc-CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence                             0   112 5566666666666666666666666677777766666666666666666677777


Q ss_pred             ccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCC
Q 003488          188 LEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT  267 (816)
Q Consensus       188 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  267 (816)
                      +++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.
T Consensus       195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~  273 (968)
T PLN00113        195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLS  273 (968)
T ss_pred             ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeee
Confidence            7666666666666666666666666666666666666666666666666666666555555443 666666666666666


Q ss_pred             ccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCccc
Q 003488          268 GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFL  347 (816)
Q Consensus       268 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l  347 (816)
                      +.+|..+..+++|++|++++|.+.+.++ ..+.++++|+.|++++|.+.                        ..+|..+
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~------------------------~~~~~~~  328 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFT------------------------GKIPVAL  328 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccC------------------------CcCChhH
Confidence            6666666666666666666665554443 22333333443333333221                        0122333


Q ss_pred             cCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEcc
Q 003488          348 RSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSIS  427 (816)
Q Consensus       348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~  427 (816)
                      ..+++|+.|++++|.+.+.                                                             
T Consensus       329 ~~l~~L~~L~L~~n~l~~~-------------------------------------------------------------  347 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGE-------------------------------------------------------------  347 (968)
T ss_pred             hcCCCCCEEECcCCCCcCc-------------------------------------------------------------
Confidence            3344444444444444433                                                             


Q ss_pred             CCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCC
Q 003488          428 NNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPL  507 (816)
Q Consensus       428 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  507 (816)
                             +|..+..+++|+.|++++|++.+.+|..+..+.+|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..
T Consensus       348 -------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~  420 (968)
T PLN00113        348 -------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL  420 (968)
T ss_pred             -------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence                   3344444455556666666665555655555566666666666666666666666666666666666666666


Q ss_pred             CcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHh
Q 003488          508 PQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQ  587 (816)
Q Consensus       508 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~  587 (816)
                      |..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+..|..   ...++|+.||+++|++++.+|..+. 
T Consensus       421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~---~~~~~L~~L~ls~n~l~~~~~~~~~-  496 (968)
T PLN00113        421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS---FGSKRLENLDLSRNQFSGAVPRKLG-  496 (968)
T ss_pred             ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc---cccccceEEECcCCccCCccChhhh-
Confidence            666777777777777777777777766667777777777777776665422   2357889999999999988875431 


Q ss_pred             hhhhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCc
Q 003488          588 NLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT  667 (816)
Q Consensus       588 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  667 (816)
                                                              .++.|+.|+|++|++++.+|..++++++|++|+|++|.++
T Consensus       497 ----------------------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  536 (968)
T PLN00113        497 ----------------------------------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS  536 (968)
T ss_pred             ----------------------------------------hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence                                                    4667889999999999999999999999999999999999


Q ss_pred             ccCCccccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCccCccccCCCCCCCCCccccccccCccCCCCCC
Q 003488          668 GRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFP  742 (816)
Q Consensus       668 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~  742 (816)
                      |.+|..++++++|+.|||++|+++|.+|..+..+++|+.|++++|+++|.+|..+++.++...+|.||+.+||.+
T Consensus       537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6e-56  Score=540.07  Aligned_cols=497  Identities=35%  Similarity=0.558  Sum_probs=376.8

Q ss_pred             CCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhh-cCCCCCCEEEccCCcCCCCCCccccCCCCccEEE
Q 003488          133 SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFL-SHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLD  211 (816)
Q Consensus       133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  211 (816)
                      .+++.|++++|.+.+.++..+..+++|+.|+|++|.+++.+|..+ ..+++|++|++++|.+++.+|.  +.+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            456666666666666666666666677777777666665555543 3666677777776666655553  3456677777


Q ss_pred             cccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCc
Q 003488          212 LSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS  291 (816)
Q Consensus       212 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  291 (816)
                      +++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++.+++|++|++++|.+.
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            7777666666666666667777777776666666665444 666777777777666666666666677777777777666


Q ss_pred             CccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchh
Q 003488          292 GHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWF  371 (816)
Q Consensus       292 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~  371 (816)
                      +.++ ..+.++++|++|++++|.+.                        ..+|..+..+++|++|++++|.+.+.+|..+
T Consensus       226 ~~~p-~~l~~l~~L~~L~L~~n~l~------------------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  280 (968)
T PLN00113        226 GEIP-YEIGGLTSLNHLDLVYNNLT------------------------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI  280 (968)
T ss_pred             CcCC-hhHhcCCCCCEEECcCceec------------------------cccChhHhCCCCCCEEECcCCeeeccCchhH
Confidence            5555 34566666666666666432                        1223334444455555555555544444444


Q ss_pred             hccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCC
Q 003488          372 WDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLS  451 (816)
Q Consensus       372 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls  451 (816)
                      .  .+++|++|++++|.+.+..+..+                  ..+++|+.|++++|.+++.+|..+..+++|+.|+++
T Consensus       281 ~--~l~~L~~L~Ls~n~l~~~~p~~~------------------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  340 (968)
T PLN00113        281 F--SLQKLISLDLSDNSLSGEIPELV------------------IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW  340 (968)
T ss_pred             h--hccCcCEEECcCCeeccCCChhH------------------cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence            3  33333333333333322111100                  123345556666677777788888899999999999


Q ss_pred             CCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCC
Q 003488          452 NNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTF  531 (816)
Q Consensus       452 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  531 (816)
                      +|.+.+.+|..+..+.+|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..
T Consensus       341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~  420 (968)
T PLN00113        341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL  420 (968)
T ss_pred             CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeecccccc
Q 003488          532 PHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGR  611 (816)
Q Consensus       532 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  611 (816)
                      |..+..+++|+.|++++|.+.+..+  ..+..+++|+.|++++|++.+.+|..+                          
T Consensus       421 p~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~~~~~~p~~~--------------------------  472 (968)
T PLN00113        421 PSEFTKLPLVYFLDISNNNLQGRIN--SRKWDMPSLQMLSLARNKFFGGLPDSF--------------------------  472 (968)
T ss_pred             ChhHhcCCCCCEEECcCCcccCccC--hhhccCCCCcEEECcCceeeeecCccc--------------------------
Confidence            9999999999999999999998865  345678999999999999998887432                          


Q ss_pred             ceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCccc
Q 003488          612 YYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV  691 (816)
Q Consensus       612 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  691 (816)
                                      ....|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++|.++
T Consensus       473 ----------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  536 (968)
T PLN00113        473 ----------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS  536 (968)
T ss_pred             ----------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence                            2356889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccccCCcCcCCeEeCccCccccCCCCC
Q 003488          692 GQIPTQLTSLNFLSKLNLSHNQLEGPIPQG  721 (816)
Q Consensus       692 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  721 (816)
                      +.+|..+..+++|+.|++++|+++|.+|..
T Consensus       537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             ccCChhHhCcccCCEEECCCCcccccCChh
Confidence            999999999999999999999999999975

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-37  Score=313.39  Aligned_cols=364  Identities=28%  Similarity=0.306  Sum_probs=196.0

Q ss_pred             CEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcc
Q 003488          110 KELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLE  189 (816)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  189 (816)
                      +.|++++|.+...... .+.++ ++|+++++..|.++ .+|...+...+|+.|+|.+|.|+....+.+..++.|+.|||+
T Consensus        81 ~~LdlsnNkl~~id~~-~f~nl-~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFE-FFYNL-PNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeccccccccCcHH-HHhcC-Ccceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            3455555555444443 44555 55555555555554 344444444456666666666655555555556666666666


Q ss_pred             CCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCcc
Q 003488          190 QNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS  269 (816)
Q Consensus       190 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  269 (816)
                      .|.|+...-..|..-.++++|+|++|+++..-...|..+.+|..|.|++|+++ .+|...|+.+++|+.|+|..|++.-.
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeee
Confidence            66655444444555555666666666665555555555556666666666665 55555555566666666665555433


Q ss_pred             CchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCC-cccc
Q 003488          270 IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFP-DFLR  348 (816)
Q Consensus       270 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~  348 (816)
                      -.-+|..+++|+.|.+..|.+. .+..+.|..+.++++|+|+.|++                         .++. .|+.
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l-------------------------~~vn~g~lf  290 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRL-------------------------QAVNEGWLF  290 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchh-------------------------hhhhccccc
Confidence            2334555555555555555554 33334444444444444444433                         3222 3556


Q ss_pred             CCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccC
Q 003488          349 SQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISN  428 (816)
Q Consensus       349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  428 (816)
                      .++.|+.|++++|.|..+-++...  .+++|+.|+|++                                          
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~Ws--ftqkL~~LdLs~------------------------------------------  326 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWS--FTQKLKELDLSS------------------------------------------  326 (873)
T ss_pred             ccchhhhhccchhhhheeecchhh--hcccceeEeccc------------------------------------------
Confidence            666666666666666655444433  333444444444                                          


Q ss_pred             CcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCc---cccCCCCccEEEccCCcccC
Q 003488          429 NKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQ---ISANGSGLVNLILNDNQFEG  505 (816)
Q Consensus       429 n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~  505 (816)
                      |+++...+.+|..+..|++|+|++|.+.......|..+++|+.|||++|.++..+.+   .|.++++|+.|++.+|++..
T Consensus       327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~  406 (873)
T KOG4194|consen  327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS  406 (873)
T ss_pred             cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence            333434444455555555555555555544444555555555555555555543322   34555666666666666664


Q ss_pred             CCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccC
Q 003488          506 PLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRS  548 (816)
Q Consensus       506 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  548 (816)
                      +...+|.++.+|++|||.+|.|..+-|++|..+ .|++|.+..
T Consensus       407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            444556666666666666666665666666555 555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-37  Score=313.01  Aligned_cols=379  Identities=24%  Similarity=0.261  Sum_probs=291.1

Q ss_pred             CCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECc
Q 003488          158 QLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLS  237 (816)
Q Consensus       158 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  237 (816)
                      .-+.||+++|.++...+..|.++++|+++++..|.++ .+|...+...+|+.|+|.+|.+..+-.+.++.++.|+.|||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            4456888888888877788888888888888888876 667655666678888888888887777778888888888888


Q ss_pred             CCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccc
Q 003488          238 GNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV  317 (816)
Q Consensus       238 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~  317 (816)
                      .|.|+ .+|...|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++ .+|...|.++++|+.|+|..|+|..
T Consensus       158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceee
Confidence            88887 777766665677888888888888777777888888888888888888 7777888888888888888887754


Q ss_pred             cccCCCCCCCcCccEEeccCCCCCCCCc-cccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCC
Q 003488          318 NTKLDANSTFPKLLKLGLSACNISEFPD-FLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP  396 (816)
Q Consensus       318 ~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  396 (816)
                      .. .-.+..+++|+.|.+..|.+..+.+ .|..+.++++|+|+.|++...-..|+.  ++++                  
T Consensus       236 ve-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~------------------  294 (873)
T KOG4194|consen  236 VE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTS------------------  294 (873)
T ss_pred             eh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc--ccch------------------
Confidence            32 2233445555555555555554432 344555555555555555544444443  3333                  


Q ss_pred             CCCCCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccC
Q 003488          397 LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHL  476 (816)
Q Consensus       397 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~  476 (816)
                                              |+.|++++|.|....++++..+++|+.|+|++|+++..-++.|..+..|++|+|++
T Consensus       295 ------------------------L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~  350 (873)
T KOG4194|consen  295 ------------------------LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH  350 (873)
T ss_pred             ------------------------hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence                                    34455555666667778888899999999999999988888899999999999999


Q ss_pred             CcCccCCCccccCCCCccEEEccCCcccCCCCc---ccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCccccc
Q 003488          477 NSFNGSIPQISANGSGLVNLILNDNQFEGPLPQ---SLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYG  553 (816)
Q Consensus       477 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  553 (816)
                      |++...-..+|..+.+|+.|||++|.++..+.+   .|.++++|+.|++.+|++..+.-.+|.++++|++|+|.+|.+..
T Consensus       351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence            999988788899999999999999999866554   58899999999999999998888899999999999999999998


Q ss_pred             ccCCCcccccCCCCceeeCCCCcccccCchHHHh
Q 003488          554 LIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQ  587 (816)
Q Consensus       554 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~  587 (816)
                      +.+  .++..+ .|+.|.+..-.|-+.....|+.
T Consensus       431 Iq~--nAFe~m-~Lk~Lv~nSssflCDCql~Wl~  461 (873)
T KOG4194|consen  431 IQP--NAFEPM-ELKELVMNSSSFLCDCQLKWLA  461 (873)
T ss_pred             ecc--cccccc-hhhhhhhcccceEEeccHHHHH
Confidence            865  456666 7888888777666555545543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.3e-39  Score=316.39  Aligned_cols=474  Identities=27%  Similarity=0.368  Sum_probs=292.4

Q ss_pred             CCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEc
Q 003488          133 SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL  212 (816)
Q Consensus       133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  212 (816)
                      ..++.+.+++|.+.. +...+.++..|++|++++|++. ..|.+++.+..++.++.++|++. .+|..+..+..|..++.
T Consensus        45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            456777777777653 3345666777777777777776 45666777777777777777765 56666777777777777


Q ss_pred             ccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcC
Q 003488          213 SWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSG  292 (816)
Q Consensus       213 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  292 (816)
                      ++|.+. ..|+.++.+..|+.++..+|++. ..|..++. +.+|..+++.+|+++...|..+. ++.|+++|...|.+. 
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-  196 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-  196 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence            777766 45556666667777777777776 66665555 66666666666666643333333 566666666655554 


Q ss_pred             ccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchhh
Q 003488          293 HIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFW  372 (816)
Q Consensus       293 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~  372 (816)
                      .+| ..++.+.+|+.|++.                         .|++..+| .|..|..|+++.++.|+|. .+|....
T Consensus       197 tlP-~~lg~l~~L~~LyL~-------------------------~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~  248 (565)
T KOG0472|consen  197 TLP-PELGGLESLELLYLR-------------------------RNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHL  248 (565)
T ss_pred             cCC-hhhcchhhhHHHHhh-------------------------hcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHh
Confidence            343 233444444444443                         34445555 4667777777777777776 3333322


Q ss_pred             ccCCCccceEEcCCCcCCCCCCC--CCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeC
Q 003488          373 DIGKDTLYNLNLSDNFLTDVEQV--PLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL  450 (816)
Q Consensus       373 ~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  450 (816)
                      . .++++..||+.+|+++.++..  -+++|+                     .||+++|.++ ..|..++++ .|+.|-+
T Consensus       249 ~-~L~~l~vLDLRdNklke~Pde~clLrsL~---------------------rLDlSNN~is-~Lp~sLgnl-hL~~L~l  304 (565)
T KOG0472|consen  249 K-HLNSLLVLDLRDNKLKEVPDEICLLRSLE---------------------RLDLSNNDIS-SLPYSLGNL-HLKFLAL  304 (565)
T ss_pred             c-ccccceeeeccccccccCchHHHHhhhhh---------------------hhcccCCccc-cCCcccccc-eeeehhh
Confidence            1 445555566665555554443  223333                     3333334443 344556666 6666677


Q ss_pred             CCCCCCCCCCchhhccC---CCCEE-------EccCCcC----ccC-CCcc---ccCCCCccEEEccCCcccCCCCcccC
Q 003488          451 SNNSLSGPIPECLVDSI---TLIWL-------DLHLNSF----NGS-IPQI---SANGSGLVNLILNDNQFEGPLPQSLA  512 (816)
Q Consensus       451 s~n~l~~~~~~~~~~~~---~L~~L-------~l~~n~l----~~~-~~~~---~~~l~~L~~L~L~~n~l~~~~~~~l~  512 (816)
                      .+|++.. +-..+..+.   -|++|       .++...=    ... .+..   .....+.+.|++++-+++ .+|....
T Consensus       305 eGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVf  382 (565)
T KOG0472|consen  305 EGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVF  382 (565)
T ss_pred             cCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHH
Confidence            7776541 111111110   01111       0110000    000 0011   112345677777777777 4555433


Q ss_pred             CCC---CCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhh
Q 003488          513 NCS---RLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNL  589 (816)
Q Consensus       513 ~l~---~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l  589 (816)
                      .-.   -....+++.|++.. +|..+..+..+.+.-+..|+..+.+|  ..++.+++|..|+|++|.+. .+|.+++   
T Consensus       383 ea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~--~~l~~l~kLt~L~L~NN~Ln-~LP~e~~---  455 (565)
T KOG0472|consen  383 EAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVP--LELSQLQKLTFLDLSNNLLN-DLPEEMG---  455 (565)
T ss_pred             HHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccch--HHHHhhhcceeeecccchhh-hcchhhh---
Confidence            222   36778888888764 56666655555544444444444432  45677888888888888775 4554442   


Q ss_pred             hhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCccc
Q 003488          590 KAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGR  669 (816)
Q Consensus       590 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  669 (816)
                                                            .+..|+.||+|+|+|. .+|+.+..+..++.+-.++|++...
T Consensus       456 --------------------------------------~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v  496 (565)
T KOG0472|consen  456 --------------------------------------SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV  496 (565)
T ss_pred             --------------------------------------hhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence                                                  4566889999999998 7899988888888888888999877


Q ss_pred             CCccccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCccCccc
Q 003488          670 IPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE  715 (816)
Q Consensus       670 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  715 (816)
                      .|+.+++|.+|.+|||.+|.+. .+|+.+++|++|+.|++++|+|+
T Consensus       497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            7777999999999999999998 67889999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.7e-38  Score=311.38  Aligned_cols=477  Identities=27%  Similarity=0.374  Sum_probs=270.3

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhcCCCCC
Q 003488           31 YLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLK  110 (816)
Q Consensus        31 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~  110 (816)
                      -++.|.+++|.+..  +.+.+.++..|.+|++++|... ..|++++.+.+++.++.++|.+..++.     .+..+.+|+
T Consensus        46 ~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~-----~i~s~~~l~  117 (565)
T KOG0472|consen   46 DLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPE-----QIGSLISLV  117 (565)
T ss_pred             chhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccH-----HHhhhhhhh
Confidence            45666677766654  4455667777777777777766 566667777777777777766655443     255666677


Q ss_pred             EEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccC
Q 003488          111 ELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQ  190 (816)
Q Consensus       111 ~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  190 (816)
                      .+++++|.+....+  .+..+ ..++.++..+|++. ..|.++..+.++..+++.+|.+....|..+. ++.|++|+...
T Consensus       118 ~l~~s~n~~~el~~--~i~~~-~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~  192 (565)
T KOG0472|consen  118 KLDCSSNELKELPD--SIGRL-LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS  192 (565)
T ss_pred             hhhccccceeecCc--hHHHH-hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccch
Confidence            77777776655443  35555 56777777777766 3566667777777777777777755554444 77777777777


Q ss_pred             CcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccC
Q 003488          191 NNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSI  270 (816)
Q Consensus       191 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  270 (816)
                      |.+. .+|..++.+.+|..|++..|.+. ..| .|.+|..|++++++.|++. .+|...+..++++..||++.|+++ ..
T Consensus       193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~  267 (565)
T KOG0472|consen  193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EV  267 (565)
T ss_pred             hhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cC
Confidence            7665 66667777777777777777776 455 5777777777777777776 677777766777777777777776 56


Q ss_pred             chhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCC----CCCcCccE----EeccCCCCC-
Q 003488          271 PSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDAN----STFPKLLK----LGLSACNIS-  341 (816)
Q Consensus       271 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~~~~~L~~----L~l~~~~l~-  341 (816)
                      |+.+.-+.+|++||+++|.++ .+| ..++++ .|+.|.+.+|.+......-..    ..+..|+.    =.++...-+ 
T Consensus       268 Pde~clLrsL~rLDlSNN~is-~Lp-~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~  344 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDIS-SLP-YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT  344 (565)
T ss_pred             chHHHHhhhhhhhcccCCccc-cCC-cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence            777777777777777777776 333 346666 677777777755321100000    00111111    011111100 


Q ss_pred             ----CCCc----cccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCC--CCCCCCEEecCCCcCC
Q 003488          342 ----EFPD----FLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV--PLKNLRFLDLRSNLLQ  411 (816)
Q Consensus       342 ----~lp~----~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~  411 (816)
                          ..|.    ......+.+.|+++.-+++.+....|......-+..++++.|.+..++..  .++.+           
T Consensus       345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkel-----------  413 (565)
T KOG0472|consen  345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKEL-----------  413 (565)
T ss_pred             cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHH-----------
Confidence                1111    12234567788888888875444433321222245566666555444321  00000           


Q ss_pred             CcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCC
Q 003488          412 GSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS  491 (816)
Q Consensus       412 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  491 (816)
                               ++.+.+++|.+ +.+|..++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. ..|..+..+.
T Consensus       414 ---------vT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq  481 (565)
T KOG0472|consen  414 ---------VTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQ  481 (565)
T ss_pred             ---------HHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHH
Confidence                     11122222222 244455555555555555555554 45555555555555555555554 3444444444


Q ss_pred             CccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccc
Q 003488          492 GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFY  552 (816)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  552 (816)
                      .++.+..++|++....|..+.++.+|..||+.+|.+. .+|..+++|++|++|.+.+|+|.
T Consensus       482 ~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  482 TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            4555555555555433344555555555555555554 23444455554444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1e-35  Score=321.20  Aligned_cols=480  Identities=26%  Similarity=0.324  Sum_probs=316.6

Q ss_pred             EEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCC
Q 003488          138 LHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQL  217 (816)
Q Consensus       138 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  217 (816)
                      +|.+.+.+. .+|..+.....++.|+++.|.+....-+...+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            344555444 45555554445666666666554332333444444666666666554 5555555566666666666655


Q ss_pred             CcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccc
Q 003488          218 TGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELC  297 (816)
Q Consensus       218 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  297 (816)
                      . ..|....++.+|+++.|.+|.+. ..|..+.. +.+|+.|+++.|.+. .+|..+..+..+..+..++|.....    
T Consensus        81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~-lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----  152 (1081)
T KOG0618|consen   81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISE-LKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----  152 (1081)
T ss_pred             h-hCchhhhhhhcchhheeccchhh-cCchhHHh-hhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----
Confidence            5 34455555566666666666554 55554433 555555666655554 4555555555555555555511101    


Q ss_pred             cccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCC-CCCccccCCcccceeecccccccCCCCchhhccCC
Q 003488          298 MFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNIS-EFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK  376 (816)
Q Consensus       298 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  376 (816)
                       ++..                          .++.+++..+.+. .++.....++.  .+|+.+|.+. ...  +.  .+
T Consensus       153 -lg~~--------------------------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d--ls--~~  198 (1081)
T KOG0618|consen  153 -LGQT--------------------------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD--LS--NL  198 (1081)
T ss_pred             -hccc--------------------------cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh--hh--hc
Confidence             1111                          1333344443332 23332333332  4677777665 111  11  44


Q ss_pred             CccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCC-CCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCC
Q 003488          377 DTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMV-LPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSL  455 (816)
Q Consensus       377 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l  455 (816)
                      ..++.+....|++..+... -++++.|+.++|.+...... .+..+++++++.|++++. |.+++.|.+|+.++..+|++
T Consensus       199 ~~l~~l~c~rn~ls~l~~~-g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  199 ANLEVLHCERNQLSELEIS-GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             cchhhhhhhhcccceEEec-CcchheeeeccCcceeeccccccccceeeecchhhhhcc-hHHHHhcccceEecccchhH
Confidence            5666666666666654432 36778888888887743333 567788999999998854 58899999999999999999


Q ss_pred             CCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcc-cCCCCC-CcEEECcCCcCCCCCcc
Q 003488          456 SGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQS-LANCSR-LQVLNVANNRIDDTFPH  533 (816)
Q Consensus       456 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~-L~~L~Ls~N~l~~~~~~  533 (816)
                      + .+|..+....+|+.|.+.+|.+. .+|....+..+|++|+|..|++. .+|+. +.-... |+.|+.+.|++......
T Consensus       277 ~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~  353 (1081)
T KOG0618|consen  277 V-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSY  353 (1081)
T ss_pred             H-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccc
Confidence            6 78888888889999999999998 56667777899999999999998 45543 344433 78888888888754433


Q ss_pred             cccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccce
Q 003488          534 WLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYY  613 (816)
Q Consensus       534 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  613 (816)
                      .=..++.|+.|++.+|.+++..  +..+..++.|++|+|++|++. .+|+..+.+                         
T Consensus       354 ~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k-------------------------  405 (1081)
T KOG0618|consen  354 EENNHAALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLN-SFPASKLRK-------------------------  405 (1081)
T ss_pred             cchhhHHHHHHHHhcCcccccc--hhhhccccceeeeeecccccc-cCCHHHHhc-------------------------
Confidence            3335778999999999998752  345678889999999999986 677776554                         


Q ss_pred             eeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCccccc
Q 003488          614 SAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ  693 (816)
Q Consensus       614 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  693 (816)
                                     +..|+.|+||+|+++ .+|.++.++..|++|....|++. ..| .+..+++|+.+|+|.|+|+..
T Consensus       406 ---------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  406 ---------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             ---------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence                           444567889999998 67888999999999999999987 666 788899999999999998854


Q ss_pred             C-ccccCCcCcCCeEeCccCc
Q 003488          694 I-PTQLTSLNFLSKLNLSHNQ  713 (816)
Q Consensus       694 ~-p~~l~~l~~L~~L~ls~N~  713 (816)
                      . |..... ++|++||+++|.
T Consensus       468 ~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  468 TLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhCCC-cccceeeccCCc
Confidence            3 433333 789999999884

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-35  Score=315.58  Aligned_cols=439  Identities=28%  Similarity=0.334  Sum_probs=211.0

Q ss_pred             CCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEcc
Q 003488          134 SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLS  213 (816)
Q Consensus       134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  213 (816)
                      .|+.|+++.|.+. ..|.+..++.+|++|.|..|.+. ..|..+..+++|++|++++|.+. .+|..+..+..++.+..+
T Consensus        69 ~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s  145 (1081)
T KOG0618|consen   69 HLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAAS  145 (1081)
T ss_pred             HHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhh
Confidence            3344444433333 23344444445555555544444 34444555555555555555443 444444445555555555


Q ss_pred             cCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCc
Q 003488          214 WNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGH  293 (816)
Q Consensus       214 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  293 (816)
                      +|.....    ++... ++.+++..|.+.+.++..... +..  .|++++|.+.   ...+..+.+|+.+....|.+. .
T Consensus       146 ~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~  213 (1081)
T KOG0618|consen  146 NNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-E  213 (1081)
T ss_pred             cchhhhh----hcccc-chhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-e
Confidence            5511111    11111 444455555444444433322 222  3555555554   123445556666666666555 2


Q ss_pred             cccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchhhc
Q 003488          294 IELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWD  373 (816)
Q Consensus       294 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  373 (816)
                      +.    -.-++|+.|+.++|.+.   .........+|+.++++.+++..+|+|+..+.+|+.+++.+|.++ .+|..+. 
T Consensus       214 l~----~~g~~l~~L~a~~n~l~---~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-  284 (1081)
T KOG0618|consen  214 LE----ISGPSLTALYADHNPLT---TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRIS-  284 (1081)
T ss_pred             EE----ecCcchheeeeccCcce---eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHh-
Confidence            21    23356666666666543   112222344566666666666677777777777777777776664 3333332 


Q ss_pred             cCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCC
Q 003488          374 IGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNN  453 (816)
Q Consensus       374 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n  453 (816)
                       ...+|+.+.+..|.+.-                                           +|......++|++|++..|
T Consensus       285 -~~~~L~~l~~~~nel~y-------------------------------------------ip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  285 -RITSLVSLSAAYNELEY-------------------------------------------IPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             -hhhhHHHHHhhhhhhhh-------------------------------------------CCCcccccceeeeeeehhc
Confidence             33344444444433332                                           2333333444555555555


Q ss_pred             CCCCCCCchhhc-cC-CCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCC
Q 003488          454 SLSGPIPECLVD-SI-TLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTF  531 (816)
Q Consensus       454 ~l~~~~~~~~~~-~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  531 (816)
                      .+. .+|..+.. .. .|..++.+.|++....-..                        =...+.|+.|.+.+|.+++..
T Consensus       321 ~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~------------------------e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  321 NLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE------------------------ENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             ccc-ccchHHHhhhhHHHHHHhhhhcccccccccc------------------------chhhHHHHHHHHhcCcccccc
Confidence            544 23322111 11 1333444444443211001                        112234444444444444444


Q ss_pred             cccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeecccccc
Q 003488          532 PHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGR  611 (816)
Q Consensus       532 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  611 (816)
                      -+.+.+.++|++|+|++|++....  ...+.+++.|+.|+||+|+++ .+|..+.                         
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fp--as~~~kle~LeeL~LSGNkL~-~Lp~tva-------------------------  427 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFP--ASKLRKLEELEELNLSGNKLT-TLPDTVA-------------------------  427 (1081)
T ss_pred             hhhhccccceeeeeecccccccCC--HHHHhchHHhHHHhcccchhh-hhhHHHH-------------------------
Confidence            444444444555555554444331  123445555555555555555 2332221                         


Q ss_pred             ceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCccc-CCccccccCCCCeEeCCCCcc
Q 003488          612 YYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGR-IPSSLRNLTVLESLDLSSNRL  690 (816)
Q Consensus       612 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l  690 (816)
                                      .+..|++|...+|++. ..| ++..++.|+.+|+|.|+++.. +|.... -++|++|||++|.-
T Consensus       428 ----------------~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  428 ----------------NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR  488 (1081)
T ss_pred             ----------------hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence                            2344445555566665 456 677777777777777777543 333332 26788888888875


Q ss_pred             cccCccccCCcCcCCeEeCccC
Q 003488          691 VGQIPTQLTSLNFLSKLNLSHN  712 (816)
Q Consensus       691 ~~~~p~~l~~l~~L~~L~ls~N  712 (816)
                      ....-..|..+.++..+++.-|
T Consensus       489 l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  489 LVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cccchhhhHHhhhhhheecccC
Confidence            4444455566666666666555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-32  Score=283.08  Aligned_cols=370  Identities=29%  Similarity=0.416  Sum_probs=275.7

Q ss_pred             CCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCE
Q 003488          106 LTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYY  185 (816)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  185 (816)
                      ++-.+-.|+++|++++...+..+... ++++.|.|...++. .+|..++.+.+|++|.+++|++. .+...+..++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence            45566777888888866555467777 78888888887776 57888999999999999999887 44567788899999


Q ss_pred             EEccCCcCC-CCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCC
Q 003488          186 LNLEQNNLV-GGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN  264 (816)
Q Consensus       186 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  264 (816)
                      +.+.+|++. .-+|..+..+..|+.||||+|++. ..|..+..-+++-+|+|++|+|. .||..+|-++..|-.||+++|
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence            999999885 346777888999999999999998 68888999999999999999998 999999998999999999999


Q ss_pred             cCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCC
Q 003488          265 RFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFP  344 (816)
Q Consensus       265 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp  344 (816)
                      ++. .+|+.+..+.+|++|+|++|.+. ......+..+++|+.|.+++.+-+.                       ..+|
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl-----------------------~N~P  215 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTL-----------------------DNIP  215 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchh-----------------------hcCC
Confidence            997 78888999999999999999876 3333445556666666666654322                       2455


Q ss_pred             ccccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCC--CCCCCCEEecCCCcCCCcCCCCCCCcc
Q 003488          345 DFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV--PLKNLRFLDLRSNLLQGSVMVLPPRLI  422 (816)
Q Consensus       345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~L~  422 (816)
                      ..+..+.+|..+|++.|.+. ..|+.+.  .+++|+.|+|++|+++.+...  ...+|++|+++.|++            
T Consensus       216 tsld~l~NL~dvDlS~N~Lp-~vPecly--~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL------------  280 (1255)
T KOG0444|consen  216 TSLDDLHNLRDVDLSENNLP-IVPECLY--KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL------------  280 (1255)
T ss_pred             CchhhhhhhhhccccccCCC-cchHHHh--hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh------------
Confidence            55666666666666666665 3444444  555666666666665554332  334444444444443            


Q ss_pred             EEEccCCcccccccccccCCCCCCeEeCCCCCCC-CCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCC
Q 003488          423 FFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS-GPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDN  501 (816)
Q Consensus       423 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  501 (816)
                               + .+|.++|.++.|+.|.+.+|+++ .-+|..++.+.+|+.+..++|.+. ..|+.++.|..|+.|.|+.|
T Consensus       281 ---------t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  281 ---------T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN  349 (1255)
T ss_pred             ---------c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence                     3 56777888888888888888775 246777777778888888877776 67777778888888888888


Q ss_pred             cccCCCCcccCCCCCCcEEECcCCcCCCCCc
Q 003488          502 QFEGPLPQSLANCSRLQVLNVANNRIDDTFP  532 (816)
Q Consensus       502 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  532 (816)
                      ++. .+|.++.-++.|++||+.+|.-.-..|
T Consensus       350 rLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  350 RLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             cee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            777 677777778888888888776443333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=4.1e-32  Score=279.94  Aligned_cols=390  Identities=29%  Similarity=0.404  Sum_probs=261.4

Q ss_pred             cccCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhc
Q 003488           26 LFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIEN  105 (816)
Q Consensus        26 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~  105 (816)
                      .+-+|..|-.|+++|.+++..+|.....|+.++.|.|....+. .+|..++.+.+|++|.+++|++..+...     +..
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGE-----Ls~   76 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGE-----LSD   76 (1255)
T ss_pred             ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhh-----hcc
Confidence            3557778888999999987778888999999999999998887 7899999999999999999987776542     344


Q ss_pred             CCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCC-CCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCC
Q 003488          106 LTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLI-GPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLY  184 (816)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  184 (816)
                      ++.                          |+.+.+..|++. .-+|..+.++..|+.||||+|+++ ..|..+..-+++-
T Consensus        77 Lp~--------------------------LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~i  129 (1255)
T KOG0444|consen   77 LPR--------------------------LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSI  129 (1255)
T ss_pred             chh--------------------------hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcE
Confidence            444                          444444444443 235666667777777777777776 5566666667777


Q ss_pred             EEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCC
Q 003488          185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN  264 (816)
Q Consensus       185 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  264 (816)
                      +|+|++|+|..+....|.+++.|-+||||+|++. .+|+.+..+..|++|+|++|.+.-.--..+ ..+++|+.|.+++.
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNT  207 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccc
Confidence            7777777776444445667777777777777776 455566677777777777776541111111 11555666666665


Q ss_pred             cCC-ccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCC
Q 003488          265 RFT-GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEF  343 (816)
Q Consensus       265 ~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l  343 (816)
                      +-+ ..+|.++..+.+|..+|++.|.+. .+| ..+-++++|+.|+|++|+|+....  ......+|++|+++.|+++.+
T Consensus       208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP-ecly~l~~LrrLNLS~N~iteL~~--~~~~W~~lEtLNlSrNQLt~L  283 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP-ECLYKLRNLRRLNLSGNKITELNM--TEGEWENLETLNLSRNQLTVL  283 (1255)
T ss_pred             cchhhcCCCchhhhhhhhhccccccCCC-cch-HHHhhhhhhheeccCcCceeeeec--cHHHHhhhhhhccccchhccc
Confidence            533 356666677777777777777665 444 345556666666666665432111  011223445555555555555


Q ss_pred             CccccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccE
Q 003488          344 PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIF  423 (816)
Q Consensus       344 p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~  423 (816)
                      |+.+..+++|+.|.+.+|+++-                                                          
T Consensus       284 P~avcKL~kL~kLy~n~NkL~F----------------------------------------------------------  305 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTF----------------------------------------------------------  305 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccc----------------------------------------------------------
Confidence            5555555555555544444320                                                          


Q ss_pred             EEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcc
Q 003488          424 FSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQF  503 (816)
Q Consensus       424 L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  503 (816)
                               .-+|..++.+..|+.+..++|.+. .+|+.++.|..|+.|.|++|++. .+|+++.-++.|+.|++..|.=
T Consensus       306 ---------eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  306 ---------EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             ---------cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence                     135677888889999999999987 89999999999999999999997 6899999999999999999975


Q ss_pred             cCCCCcccCCCCCCcEEECc
Q 003488          504 EGPLPQSLANCSRLQVLNVA  523 (816)
Q Consensus       504 ~~~~~~~l~~l~~L~~L~Ls  523 (816)
                      .-..|..-..-++|+.-++.
T Consensus       375 LVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  375 LVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             ccCCCCcchhhhcceeeecc
Confidence            53434322222566655554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=1.4e-25  Score=220.70  Aligned_cols=290  Identities=25%  Similarity=0.252  Sum_probs=188.3

Q ss_pred             CCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcC-CCCCcccchhhhhCCCCccEEE
Q 003488          182 QLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSG-NSLNGTIPSWLFTVLPYLEVIH  260 (816)
Q Consensus       182 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~  260 (816)
                      .-..++|..|+|+...+.+|..+++|+.|||++|.|+.+.|++|.++++|.+|-+.+ |+|+ .+|...|.++..|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            456777777887777777788888888888888888877888888888777766655 7776 78888888888888888


Q ss_pred             ccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCC
Q 003488          261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNI  340 (816)
Q Consensus       261 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l  340 (816)
                      +.-|++.....+.|..++++..|.+.+|.+. .+....|..+..++.+.+..|........      +.+... +     
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL------~wla~~-~-----  213 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNL------PWLADD-L-----  213 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccccc------chhhhH-H-----
Confidence            8888888777788888888888888888877 66666777888888887777753211110      000000 0     


Q ss_pred             CCCCccccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCC
Q 003488          341 SEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPR  420 (816)
Q Consensus       341 ~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  420 (816)
                      ...|..++......-..+.+.++..+.+..|..    +++.+                  .+                  
T Consensus       214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c----~~esl------------------~s------------------  253 (498)
T KOG4237|consen  214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLC----SLESL------------------PS------------------  253 (498)
T ss_pred             hhchhhcccceecchHHHHHHHhcccchhhhhh----hHHhH------------------HH------------------
Confidence            001111222222222333333333332222210    00000                  00                  


Q ss_pred             ccEEEccCCccccc-ccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEcc
Q 003488          421 LIFFSISNNKLTGE-IPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILN  499 (816)
Q Consensus       421 L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  499 (816)
                        .+. +.+...+. ....|..+++|+++++++|+++++-+.+|.....++.|.|..|++..+....|.++..|++|+|.
T Consensus       254 --~~~-~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~  330 (498)
T KOG4237|consen  254 --RLS-SEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY  330 (498)
T ss_pred             --hhc-cccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence              000 00111111 22346777888888888888887778888888888888888888877667777888888888888


Q ss_pred             CCcccCCCCcccCCCCCCcEEECcCCcCC
Q 003488          500 DNQFEGPLPQSLANCSRLQVLNVANNRID  528 (816)
Q Consensus       500 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  528 (816)
                      +|+|+...|.+|..+.+|.+|++-.|.+.
T Consensus       331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  331 DNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             CCeeEEEecccccccceeeeeehccCccc
Confidence            88888778888888888888888777653

>PLN03210 Resistant to P

Probab=99.89  E-value=1.6e-21  Score=237.84  Aligned_cols=359  Identities=22%  Similarity=0.290  Sum_probs=256.9

Q ss_pred             CCcEEEEECCCCCCcc-ccCCccccccCCCCCEEeCCCCCCCC-----CCCCccccCCC-CCCEEECCCCCCCccCchhh
Q 003488            3 TGQVIGLDLSCSWLHG-SIPSNSSLFLLPYLETLNLGSNDFNS-----SLISSGFGRLI-SLTHLNLSNSYFSGQIPSEI   75 (816)
Q Consensus         3 ~~~l~~L~L~~~~~~~-~~~~~~~~~~l~~L~~L~Ls~~~~~~-----~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~l   75 (816)
                      |.+|+.+.+.-..+.. .+. ..+|..+++|++|.+..+....     ..+|..+..++ +|+.|++.++.+. .+|..+
T Consensus       531 ~~~v~~i~l~~~~~~~~~i~-~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f  608 (1153)
T PLN03210        531 TKKVLGITLDIDEIDELHIH-ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF  608 (1153)
T ss_pred             cceeeEEEeccCccceeeec-HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC
Confidence            3467766665444322 122 2268899999999997653211     12667777764 6999999999887 667766


Q ss_pred             hcCCCCCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCC
Q 003488           76 SQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLAN  155 (816)
Q Consensus        76 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~  155 (816)
                       ...+|++|+++++.+..++.+     +..+++|+.|+++++......+  .+..+ ++|++|++++|.....+|..+.+
T Consensus       609 -~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l-~~Le~L~L~~c~~L~~lp~si~~  679 (1153)
T PLN03210        609 -RPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIP--DLSMA-TNLETLKLSDCSSLVELPSSIQY  679 (1153)
T ss_pred             -CccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCC--ccccC-CcccEEEecCCCCccccchhhhc
Confidence             578999999999977765433     5679999999999876554444  35555 89999999999877788999999


Q ss_pred             CCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEE
Q 003488          156 LPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLR  235 (816)
Q Consensus       156 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  235 (816)
                      +++|+.|++++|..-..+|..+ ++++|+.|++++|.....+|..   ..+|++|++++|.+. .+|..+ .+++|++|+
T Consensus       680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~  753 (1153)
T PLN03210        680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELI  753 (1153)
T ss_pred             cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccccccccc
Confidence            9999999999976555666655 7899999999998765555543   468899999999987 566554 578888888


Q ss_pred             CcCCCCC------cccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceee
Q 003488          236 LSGNSLN------GTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLY  309 (816)
Q Consensus       236 l~~n~l~------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  309 (816)
                      +.++...      ..++...+...++|+.|++++|...+.+|..++++++|+.|++++|...+.+|...  .+++|+.|+
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~  831 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLD  831 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEE
Confidence            8774321      01222223336789999999998877889999999999999999986555666432  688899999


Q ss_pred             CCCccccccccCCCCCCCcCccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchhhccCCCccceEEcCC
Q 003488          310 LSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD  386 (816)
Q Consensus       310 L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~  386 (816)
                      +++|..  .....  ...++|+.|++++|.+.++|.++..+++|+.|++++|.--..+|....  .++.|+.+++++
T Consensus       832 Ls~c~~--L~~~p--~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~  902 (1153)
T PLN03210        832 LSGCSR--LRTFP--DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSD  902 (1153)
T ss_pred             CCCCCc--ccccc--ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCC
Confidence            988742  11111  124578888888888888888888888888888887543333444333  344455555444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=1.6e-21  Score=237.74  Aligned_cols=213  Identities=21%  Similarity=0.238  Sum_probs=128.8

Q ss_pred             CcCccEEeccCC-CCCCCCccccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCC-CCCCCCEEe
Q 003488          327 FPKLLKLGLSAC-NISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV-PLKNLRFLD  404 (816)
Q Consensus       327 ~~~L~~L~l~~~-~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~  404 (816)
                      +++|+.|++++| .+..+|..+ .+++|+.|++++|...+.+|.     ...+|++|++++|.+..++.. .+++|+.|+
T Consensus       680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~  753 (1153)
T PLN03210        680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDETAIEEFPSNLRLENLDELI  753 (1153)
T ss_pred             cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc-----ccCCcCeeecCCCcccccccccccccccccc
Confidence            334444444443 233444322 344555555555543333332     123455555555555444332 345555555


Q ss_pred             cCCCcCC----------CcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEc
Q 003488          405 LRSNLLQ----------GSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDL  474 (816)
Q Consensus       405 l~~n~l~----------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l  474 (816)
                      +.++...          ......+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|++
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L  832 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL  832 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence            5443211          1111235678888888887777778888888888888888876555666654 5778888888


Q ss_pred             cCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcc
Q 003488          475 HLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNK  550 (816)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  550 (816)
                      ++|.....+|..   .++|+.|++++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus       833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        833 SGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            887655455443   356788888888887 567778888888888888764444466667777888888887774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=2.9e-25  Score=218.54  Aligned_cols=296  Identities=25%  Similarity=0.185  Sum_probs=172.6

Q ss_pred             hhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccC-CcCCCCCCccccCCC
Q 003488          127 SLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQ-NNLVGGIPDSFVNLT  205 (816)
Q Consensus       127 ~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~  205 (816)
                      ...++|+...+++|..|+|+...+.+|+.+++|+.||||+|.|+.+.|++|.++++|..|-+.+ |+|+....+.|+++.
T Consensus        61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            3445666677777777777766666677777777777777777766666776666666655554 666655555666666


Q ss_pred             CccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEc
Q 003488          206 QLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRL  285 (816)
Q Consensus       206 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  285 (816)
                      .|+.|.+.-|++.....+.|..+++|..|.+..|.+. .++...+..+..++.+.+..|.+...                
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icd----------------  203 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICD----------------  203 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccc----------------
Confidence            6666666666666555555666666666666666555 55554444455555555555543210                


Q ss_pred             ccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCc--cccCCcccceeecccccc
Q 003488          286 SSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPD--FLRSQDRLEWLQLSENKI  363 (816)
Q Consensus       286 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~--~l~~~~~L~~L~l~~n~l  363 (816)
                                    .+++.+... +..+.+.       ...+....-..+.+.++..++.  +......+..--.+.+..
T Consensus       204 --------------CnL~wla~~-~a~~~ie-------tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~  261 (498)
T KOG4237|consen  204 --------------CNLPWLADD-LAMNPIE-------TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP  261 (498)
T ss_pred             --------------cccchhhhH-Hhhchhh-------cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc
Confidence                          111111100 0000000       0001111111122222222221  000001111111112222


Q ss_pred             cCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCC
Q 003488          364 YGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAA  443 (816)
Q Consensus       364 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  443 (816)
                      .+.-|..-                                           +..+++|+.+++++|++++.-+.+|....
T Consensus       262 d~~cP~~c-------------------------------------------f~~L~~L~~lnlsnN~i~~i~~~aFe~~a  298 (498)
T KOG4237|consen  262 DSICPAKC-------------------------------------------FKKLPNLRKLNLSNNKITRIEDGAFEGAA  298 (498)
T ss_pred             CCcChHHH-------------------------------------------HhhcccceEeccCCCccchhhhhhhcchh
Confidence            22222111                                           11234455566666777777778888899


Q ss_pred             CCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCccc
Q 003488          444 PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFE  504 (816)
Q Consensus       444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (816)
                      .+++|.+..|++...-...|.++..|+.|+|.+|+++...|.+|..+.+|.+|.+-.|.+.
T Consensus       299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            9999999999998777778999999999999999999999999999999999999998775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.7e-21  Score=219.45  Aligned_cols=261  Identities=28%  Similarity=0.330  Sum_probs=135.5

Q ss_pred             cceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCccc
Q 003488          353 LEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLT  432 (816)
Q Consensus       353 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~  432 (816)
                      -..|+++++.++ .+|..+.    +.++.|++.+|+++.++. ..++|++|++++|.++.. +..++             
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP~-lp~~Lk~LdLs~N~LtsL-P~lp~-------------  262 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSL-PVLPP-------------  262 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCCC-CCCCCcEEEecCCccCcc-cCccc-------------
Confidence            445666666665 3444332    245566666666555443 234455555555544422 22333             


Q ss_pred             ccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccC
Q 003488          433 GEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLA  512 (816)
Q Consensus       433 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  512 (816)
                                 +|+.|++++|.+. .+|..   ..+|+.|++++|+++. +|.   ..++|+.|++++|++++ +|..  
T Consensus       263 -----------sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l--  320 (788)
T PRK15387        263 -----------GLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL--  320 (788)
T ss_pred             -----------ccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC--
Confidence                       4555555555544 22221   1245555555555542 222   12445555555555553 2321  


Q ss_pred             CCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhh
Q 003488          513 NCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAM  592 (816)
Q Consensus       513 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l  592 (816)
                       ..+|+.|++++|++++ +|..   .++|+.|++++|++++..+      ..++|+.|++++|.+++ +|.         
T Consensus       321 -p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~L~~-LP~---------  379 (788)
T PRK15387        321 -PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTS-LPA---------  379 (788)
T ss_pred             -cccccccccccCcccc-cccc---ccccceEecCCCccCCCCC------CCcccceehhhcccccc-Ccc---------
Confidence             1245555566665553 2321   1355666666666654321      12455666666666653 331         


Q ss_pred             hccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCc
Q 003488          593 MRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPS  672 (816)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  672 (816)
                                                         ....|+.||+++|+|++ +|..   .++|+.|++++|++++ +|.
T Consensus       380 -----------------------------------l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~  419 (788)
T PRK15387        380 -----------------------------------LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPM  419 (788)
T ss_pred             -----------------------------------cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCc
Confidence                                               11235566677777663 4432   2456677777777763 554


Q ss_pred             cccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCccCccccCCCC
Q 003488          673 SLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ  720 (816)
Q Consensus       673 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  720 (816)
                      ..   .+|+.|++++|+++ .+|.++.++++|+.|++++|+|+|.+|.
T Consensus       420 l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        420 LP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            32   35666777777776 5666677777777777777777766554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.5e-21  Score=218.07  Aligned_cols=266  Identities=27%  Similarity=0.327  Sum_probs=161.1

Q ss_pred             CccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCC
Q 003488          329 KLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSN  408 (816)
Q Consensus       329 ~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  408 (816)
                      .-..|+++.+.++++|..+.  ++|+.|++.+|+++. +|.     ..++|++|++++|+++.++. ..++|+.|++++|
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~-----lp~~Lk~LdLs~N~LtsLP~-lp~sL~~L~Ls~N  272 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSN  272 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCC-----CCCCCcEEEecCCccCcccC-cccccceeeccCC
Confidence            45678999999999998665  489999999999986 443     35789999999999998864 3578999999999


Q ss_pred             cCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCcccc
Q 003488          409 LLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISA  488 (816)
Q Consensus       409 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  488 (816)
                      .++.. +..+..|+.|++++|+++.. |.   ..++|+.|++++|++++ +|..   ...|+.|++++|.+         
T Consensus       273 ~L~~L-p~lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L---------  334 (788)
T PRK15387        273 PLTHL-PALPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL---------  334 (788)
T ss_pred             chhhh-hhchhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcc---------
Confidence            87642 22445566666666665532 22   12445555555555553 2221   12344444444444         


Q ss_pred             CCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCc
Q 003488          489 NGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLR  568 (816)
Q Consensus       489 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  568 (816)
                                     ++ +|..   ..+|+.|++++|++++ +|..   .++|+.|++++|++.+...      ...+|+
T Consensus       335 ---------------~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~------l~~~L~  385 (788)
T PRK15387        335 ---------------TS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA------LPSGLK  385 (788)
T ss_pred             ---------------cc-cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc------cccccc
Confidence                           42 2321   1345555555555553 2221   1345555555555554311      123466


Q ss_pred             eeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCcccccCch
Q 003488          569 ILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPE  648 (816)
Q Consensus       569 ~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~  648 (816)
                      .|++++|++++ +|.                                            ..+.|+.||+|+|++++ +|.
T Consensus       386 ~LdLs~N~Lt~-LP~--------------------------------------------l~s~L~~LdLS~N~Lss-IP~  419 (788)
T PRK15387        386 ELIVSGNRLTS-LPV--------------------------------------------LPSELKELMVSGNRLTS-LPM  419 (788)
T ss_pred             eEEecCCcccC-CCC--------------------------------------------cccCCCEEEccCCcCCC-CCc
Confidence            66666666653 331                                            12235566777777663 554


Q ss_pred             hhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCC
Q 003488          649 VVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTS  700 (816)
Q Consensus       649 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  700 (816)
                      ..   .+|+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..+..
T Consensus       420 l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        420 LP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             ch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            32   35666777777776 56777777777777777777777776665533

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=3.2e-19  Score=202.82  Aligned_cols=98  Identities=32%  Similarity=0.405  Sum_probs=41.1

Q ss_pred             CCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECc
Q 003488          444 PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVA  523 (816)
Q Consensus       444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  523 (816)
                      +|+.|++++|++. .+|..+.  .+|+.|++++|++.. +|..+.  ++|+.|++++|++++ +|..+.  ++|+.|+++
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQ  312 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhc
Confidence            3444555555444 3333332  244555555554442 333221  244555555554442 232221  244455555


Q ss_pred             CCcCCCCCcccccCCCCCcEEEccCccccc
Q 003488          524 NNRIDDTFPHWLAQLPELLVLILRSNKFYG  553 (816)
Q Consensus       524 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  553 (816)
                      +|+++. +|..+  .++|+.|++++|.+++
T Consensus       313 ~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        313 SNSLTA-LPETL--PPGLKTLEAGENALTS  339 (754)
T ss_pred             CCcccc-CCccc--cccceeccccCCcccc
Confidence            555443 22221  1344445555554443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=6.3e-19  Score=200.41  Aligned_cols=246  Identities=26%  Similarity=0.379  Sum_probs=181.9

Q ss_pred             CCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcC
Q 003488          400 LRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSF  479 (816)
Q Consensus       400 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l  479 (816)
                      ...|+++++.++..+...++.++.|++++|.++. +|..+.  ++|+.|++++|+++ .+|..+.  .+|+.|++++|.+
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L  253 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRI  253 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCcc
Confidence            3445555555554333345566677777777764 444443  47999999999988 5676554  4799999999999


Q ss_pred             ccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCc
Q 003488          480 NGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTD  559 (816)
Q Consensus       480 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  559 (816)
                      . .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++....   
T Consensus       254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~---  321 (754)
T PRK15370        254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPE---  321 (754)
T ss_pred             C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCc---
Confidence            8 5565543  57999999999998 5676553  589999999999986 444432  478999999999986522   


Q ss_pred             ccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccC
Q 003488          560 ARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSS  639 (816)
Q Consensus       560 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~  639 (816)
                        ...++|+.|++++|.+++ +|..+                                           .+.|+.|++++
T Consensus       322 --~l~~sL~~L~Ls~N~Lt~-LP~~l-------------------------------------------~~sL~~L~Ls~  355 (754)
T PRK15370        322 --TLPPGLKTLEAGENALTS-LPASL-------------------------------------------PPELQVLDVSK  355 (754)
T ss_pred             --cccccceeccccCCcccc-CChhh-------------------------------------------cCcccEEECCC
Confidence              124689999999999885 55322                                           34678899999


Q ss_pred             CcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccc----cCCcCcCCeEeCccCccc
Q 003488          640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQ----LTSLNFLSKLNLSHNQLE  715 (816)
Q Consensus       640 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~  715 (816)
                      |+|+ .+|..+.  ++|++|+|++|+++ .+|..+.  ..|+.|++++|+++ .+|.+    +..++.+..+++.+|+++
T Consensus       356 N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        356 NQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            9998 5777664  68999999999998 5677665  47999999999998 44544    445588899999999987


Q ss_pred             c
Q 003488          716 G  716 (816)
Q Consensus       716 g  716 (816)
                      .
T Consensus       429 ~  429 (754)
T PRK15370        429 E  429 (754)
T ss_pred             H
Confidence            4

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=2e-18  Score=183.40  Aligned_cols=278  Identities=24%  Similarity=0.267  Sum_probs=136.0

Q ss_pred             EeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCcc----CchhhhcCCCCCEEeCCCCCCcccc--CCcHHHHhhcCCC
Q 003488           35 LNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQ----IPSEISQLSKMLSLDLSKNDEVRIE--SPVWKGLIENLTK  108 (816)
Q Consensus        35 L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~--~~~~~~~l~~l~~  108 (816)
                      |+|..+.+++..+...+..+.+|++|+++++.++..    ++..+...++|++++++++.+...+  .......+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            334444443222333344444455555554444321    2233334444555555444332100  0111223444555


Q ss_pred             CCEEeCCCccCCCccchhhhhccC--CCCcEEEccCCcCCC----CCCccCCCC-CCCCEEEccCCCCCCC----chhhh
Q 003488          109 LKELVLSEVDMSTIVLDYSLTNLS--SSLSYLHLTGCNLIG----PIPASLANL-PQLTSLSLSYNHFSGH----IPSFL  177 (816)
Q Consensus       109 L~~L~l~~~~~~~~~~~~~~~~l~--~~L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~~~  177 (816)
                      |+.|++++|.+...... .+..+.  ++|++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..+
T Consensus        83 L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          83 LQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             eeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            55555555555433222 222221  126666666555542    122233444 6667777777666632    23345


Q ss_pred             cCCCCCCEEEccCCcCCCC----CCccccCCCCccEEEcccCCCCcC----CcccCCCCCCCcEEECcCCCCCcccchhh
Q 003488          178 SHLKQLYYLNLEQNNLVGG----IPDSFVNLTQLSFLDLSWNQLTGR----LPSCLKGLRNLVTLRLSGNSLNGTIPSWL  249 (816)
Q Consensus       178 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  249 (816)
                      ..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+++.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            5566677777777766532    223344556777777777766532    22345566777777777777664222222


Q ss_pred             hhC----CCCccEEEccCCcCCc----cCchhhhcCCCCCEEEcccCCCcCccc---cccccCC-CccceeeCCCc
Q 003488          250 FTV----LPYLEVIHLRDNRFTG----SIPSTIFELVNLTSIRLSSNNLSGHIE---LCMFARL-KNLQYLYLSQN  313 (816)
Q Consensus       250 ~~~----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l-~~L~~L~L~~n  313 (816)
                      ...    .+.|++|++++|.+++    .+...+..+++|+++++++|.+...-.   ...+... +.|+++++.+|
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            221    3577777777777652    223344555677777777777663310   0122222 45566665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2.9e-18  Score=182.17  Aligned_cols=279  Identities=24%  Similarity=0.279  Sum_probs=202.3

Q ss_pred             EEECCCCCCcc-ccCCccccccCCCCCEEeCCCCCCCCC---CCCccccCCCCCCEEECCCCCCCc------cCchhhhc
Q 003488            8 GLDLSCSWLHG-SIPSNSSLFLLPYLETLNLGSNDFNSS---LISSGFGRLISLTHLNLSNSYFSG------QIPSEISQ   77 (816)
Q Consensus         8 ~L~L~~~~~~~-~~~~~~~~~~l~~L~~L~Ls~~~~~~~---~~~~~~~~l~~L~~L~Ls~n~~~~------~~~~~l~~   77 (816)
                      .|+|.++.+.+ .+..  -+..+++|++|+++++.++..   .++..+...++|++|+++++.+.+      .++..+.+
T Consensus         2 ~l~L~~~~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGELLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCcccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            47788888863 3433  566788899999999988542   144567788889999999998762      24456778


Q ss_pred             CCCCCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCccCCCccchh---hhhccCCCCcEEEccCCcCCCC----CC
Q 003488           78 LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDY---SLTNLSSSLSYLHLTGCNLIGP----IP  150 (816)
Q Consensus        78 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~~L~~L~L~~n~l~~~----~~  150 (816)
                      +++|++|++++|.+.......+...... ++|++|++++|.+++.....   .+..++++|++|++++|.+++.    ++
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            9999999999997764333334443444 66999999999987543321   3344447899999999998843    34


Q ss_pred             ccCCCCCCCCEEEccCCCCCCC----chhhhcCCCCCCEEEccCCcCCCC----CCccccCCCCccEEEcccCCCCcCCc
Q 003488          151 ASLANLPQLTSLSLSYNHFSGH----IPSFLSHLKQLYYLNLEQNNLVGG----IPDSFVNLTQLSFLDLSWNQLTGRLP  222 (816)
Q Consensus       151 ~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~  222 (816)
                      ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+...
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            4566778999999999999843    334556678999999999998743    33456788999999999999875322


Q ss_pred             ccC-----CCCCCCcEEECcCCCCCcc----cchhhhhCCCCccEEEccCCcCCcc----CchhhhcC-CCCCEEEcccC
Q 003488          223 SCL-----KGLRNLVTLRLSGNSLNGT----IPSWLFTVLPYLEVIHLRDNRFTGS----IPSTIFEL-VNLTSIRLSSN  288 (816)
Q Consensus       223 ~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~L~~n  288 (816)
                      ..+     ...+.|++|++++|.+++.    +... ...+++|+++++++|.++..    ....+... +.|+++++.+|
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            222     1347999999999998622    2232 33368999999999999854    44444455 68999998887


Q ss_pred             CC
Q 003488          289 NL  290 (816)
Q Consensus       289 ~l  290 (816)
                      .+
T Consensus       318 ~~  319 (319)
T cd00116         318 SF  319 (319)
T ss_pred             CC
Confidence            53

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.2e-18  Score=150.67  Aligned_cols=182  Identities=31%  Similarity=0.567  Sum_probs=138.2

Q ss_pred             CCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCc
Q 003488          489 NGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLR  568 (816)
Q Consensus       489 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  568 (816)
                      .+..++.|.+++|+++ ..|..+..+.+|++|++++|++.+ .|..++.++.|+.|+++-|++...   +..++.+|.|+
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~l---prgfgs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNIL---PRGFGSFPALE  105 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhcC---ccccCCCchhh
Confidence            3455666777777777 566677777788888888887764 566777788888888888877665   35778888888


Q ss_pred             eeeCCCCcccc-cCchHHHhhhhhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCcccccCc
Q 003488          569 ILDLSRNEFTG-VLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIP  647 (816)
Q Consensus       569 ~L~Ls~N~l~~-~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  647 (816)
                      .||+++|++.. .+|..+|                                         .+..|..|.|+.|.+. .+|
T Consensus       106 vldltynnl~e~~lpgnff-----------------------------------------~m~tlralyl~dndfe-~lp  143 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFF-----------------------------------------YMTTLRALYLGDNDFE-ILP  143 (264)
T ss_pred             hhhccccccccccCCcchh-----------------------------------------HHHHHHHHHhcCCCcc-cCC
Confidence            88888888864 4454443                                         2344556788899988 789


Q ss_pred             hhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCcCc---CCeEeCccCccccCCC
Q 003488          648 EVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNF---LSKLNLSHNQLEGPIP  719 (816)
Q Consensus       648 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~ls~N~l~g~ip  719 (816)
                      ..++++++|+.|.+..|.+. .+|..++.++.|+.|++.+|+++ .+|+.++++.-   =+.+.+.+|+...+|-
T Consensus       144 ~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  144 PDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             hhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            99999999999999999998 78999999999999999999999 55667766542   2445666777765543

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=2.1e-15  Score=171.53  Aligned_cols=118  Identities=36%  Similarity=0.562  Sum_probs=105.5

Q ss_pred             cceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCc
Q 003488          631 IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLS  710 (816)
Q Consensus       631 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  710 (816)
                      .++.|+|++|.++|.+|..++++++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccccCCCCCCC--CCccccccccCccCCCCCCCCCCCC
Q 003488          711 HNQLEGPIPQGPQ--FNTFQSDSYIGNLGLCGFPLSDKCS  748 (816)
Q Consensus       711 ~N~l~g~ip~~~~--~~~~~~~~~~~n~~lcg~~~~~~c~  748 (816)
                      +|+++|.+|....  +.......+.+|+.+||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997522  1222344578999999987666774

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.52  E-value=2.6e-16  Score=137.78  Aligned_cols=153  Identities=31%  Similarity=0.500  Sum_probs=88.9

Q ss_pred             CCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEc
Q 003488          133 SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL  212 (816)
Q Consensus       133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  212 (816)
                      ..++.|.|++|+++ .+|..++.+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++. ..|..|+.+|.|+.||+
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            44555555555555 34445555666666666666655 44555566666666666665554 55556666666666666


Q ss_pred             ccCCCCc-CCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCc
Q 003488          213 SWNQLTG-RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS  291 (816)
Q Consensus       213 ~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  291 (816)
                      .+|.+.+ ..|..|..++.|+.|+++.|.+. .+|..+.. +++|+.|.++.|.+- .+|..++.++.|++|.+.+|+++
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~-lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            6655543 34555555566666666666655 55555554 666666666666554 45566666666666666666655

>PLN03150 hypothetical protein; Provisional

Probab=99.30  E-value=5.3e-12  Score=143.95  Aligned_cols=113  Identities=31%  Similarity=0.481  Sum_probs=101.1

Q ss_pred             CCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCccccc
Q 003488          566 KLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQ  645 (816)
Q Consensus       566 ~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  645 (816)
                      .++.|+|++|.++|.+|..+.                                         .++.|+.|+|++|+++|.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~-----------------------------------------~L~~L~~L~Ls~N~l~g~  457 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDIS-----------------------------------------KLRHLQSINLSGNSIRGN  457 (623)
T ss_pred             EEEEEECCCCCccccCCHHHh-----------------------------------------CCCCCCEEECCCCcccCc
Confidence            478899999999999986542                                         567889999999999999


Q ss_pred             CchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCc-CcCCeEeCccCccccCCC
Q 003488          646 IPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSL-NFLSKLNLSHNQLEGPIP  719 (816)
Q Consensus       646 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip  719 (816)
                      +|..++.+++|+.|||++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ .++..+++++|+..+.+|
T Consensus       458 iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999999999999999999999999999999999999999999999998764 467889999997655455

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=9.7e-13  Score=129.31  Aligned_cols=252  Identities=24%  Similarity=0.278  Sum_probs=155.4

Q ss_pred             cccCCCCCEEeCCCCCCCCC---CCCccccCCCCCCEEECCCCC---CCccCchh-------hhcCCCCCEEeCCCCCCc
Q 003488           26 LFLLPYLETLNLGSNDFNSS---LISSGFGRLISLTHLNLSNSY---FSGQIPSE-------ISQLSKMLSLDLSKNDEV   92 (816)
Q Consensus        26 ~~~l~~L~~L~Ls~~~~~~~---~~~~~~~~l~~L~~L~Ls~n~---~~~~~~~~-------l~~l~~L~~L~Ls~n~~~   92 (816)
                      +..+..+++++||+|.+...   .+...+.+.+.|+..++++-.   ....+|..       +..+++|++||||.|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            44566777888888776432   023345666777777777642   22234433       345678888888888766


Q ss_pred             cccCCcHHHHhhcCCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCC
Q 003488           93 RIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGH  172 (816)
Q Consensus        93 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  172 (816)
                      .-....+...+.+++.|++|.|.+|.+....-. .++   ..|.+|.  .++       ..+.-++|+++....|.+...
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~-~l~---~al~~l~--~~k-------k~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG-RLG---RALFELA--VNK-------KAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHH-HHH---HHHHHHH--HHh-------ccCCCcceEEEEeeccccccc
Confidence            655566777777788888888887776644322 111   2222222  111       223446788888888877632


Q ss_pred             ----chhhhcCCCCCCEEEccCCcCCC----CCCccccCCCCccEEEcccCCCCcC----CcccCCCCCCCcEEECcCCC
Q 003488          173 ----IPSFLSHLKQLYYLNLEQNNLVG----GIPDSFVNLTQLSFLDLSWNQLTGR----LPSCLKGLRNLVTLRLSGNS  240 (816)
Q Consensus       173 ----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~  240 (816)
                          +...|...+.|+.+.++.|.|..    ....+|..+++|+.|||.+|.++..    +...+..+++|+.+++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                33466777888888888887752    2334577888888888888877642    33445667778888888887


Q ss_pred             CCcccchh----hhhCCCCccEEEccCCcCCcc----CchhhhcCCCCCEEEcccCCC
Q 003488          241 LNGTIPSW----LFTVLPYLEVIHLRDNRFTGS----IPSTIFELVNLTSIRLSSNNL  290 (816)
Q Consensus       241 l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l  290 (816)
                      +.......    +-...|.|+.+.+.+|.++..    +...+...+.|..|++++|.+
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            76443322    223356777777777776522    122233455666666666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=4.7e-13  Score=139.18  Aligned_cols=189  Identities=30%  Similarity=0.482  Sum_probs=118.4

Q ss_pred             EEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCccc
Q 003488          472 LDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF  551 (816)
Q Consensus       472 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  551 (816)
                      .|++.|++. .+|..++.+..|+.+.+..|.+. .+|.++.++..|..|||+.|+++. .|..+..|+ |+.|.+++|++
T Consensus        80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCcc
Confidence            344444443 33444444444555555555554 455555566666666666666553 344444443 56666666666


Q ss_pred             ccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccceeeEEEeecceeccccccc
Q 003488          552 YGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSI  631 (816)
Q Consensus       552 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  631 (816)
                      +....   ..+..++|..||.+.|.+. .+|...                                         +.+.+
T Consensus       156 ~~lp~---~ig~~~tl~~ld~s~nei~-slpsql-----------------------------------------~~l~s  190 (722)
T KOG0532|consen  156 TSLPE---EIGLLPTLAHLDVSKNEIQ-SLPSQL-----------------------------------------GYLTS  190 (722)
T ss_pred             ccCCc---ccccchhHHHhhhhhhhhh-hchHHh-----------------------------------------hhHHH
Confidence            65532   3345667777777777775 233222                                         13455


Q ss_pred             ceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCcccc---CCcCcCCeEe
Q 003488          632 FLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQL---TSLNFLSKLN  708 (816)
Q Consensus       632 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~  708 (816)
                      |..|.+..|++. ..|+++.. -.|..||+|+|+++ .||-.|.+|+.|++|-|.+|.|.. .|..+   +...=.++|+
T Consensus       191 lr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~  266 (722)
T KOG0532|consen  191 LRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLS  266 (722)
T ss_pred             HHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeec
Confidence            666777788887 57888884 46788999999998 899999999999999999999984 44443   3444566776


Q ss_pred             CccCc
Q 003488          709 LSHNQ  713 (816)
Q Consensus       709 ls~N~  713 (816)
                      ..-++
T Consensus       267 ~qA~q  271 (722)
T KOG0532|consen  267 TQACQ  271 (722)
T ss_pred             chhcc
Confidence            66553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.7e-11  Score=123.94  Aligned_cols=163  Identities=25%  Similarity=0.220  Sum_probs=78.6

Q ss_pred             cCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCcc--CchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhc
Q 003488           28 LLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQ--IPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIEN  105 (816)
Q Consensus        28 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~  105 (816)
                      ++.+||...|.++.............|++++.||||+|-+..-  +-.....+++|+.|+++.|.+....+....   ..
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~~  195 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---LL  195 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch---hh
Confidence            5666666666666543310112455666677777776665532  112234566666666666654432222111   13


Q ss_pred             CCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCc-hhhhcCCCCCC
Q 003488          106 LTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHI-PSFLSHLKQLY  184 (816)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~  184 (816)
                      ++.|+.|.++.|.++..........+ |+|+.|+|..|............+..|+.|||++|++-... -...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~f-Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTF-PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhC-CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            45555555666655544333222333 55555555555322222222333445555555555543211 12334455555


Q ss_pred             EEEccCCcCC
Q 003488          185 YLNLEQNNLV  194 (816)
Q Consensus       185 ~L~L~~n~l~  194 (816)
                      .|+++.+.+.
T Consensus       275 ~Lnls~tgi~  284 (505)
T KOG3207|consen  275 QLNLSSTGIA  284 (505)
T ss_pred             hhhccccCcc
Confidence            5555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=9.8e-12  Score=122.38  Aligned_cols=237  Identities=20%  Similarity=0.215  Sum_probs=132.6

Q ss_pred             CcEEEEECCCCCCcc----ccCCccccccCCCCCEEeCCCCCCCCCC---CCc-------cccCCCCCCEEECCCCCCCc
Q 003488            4 GQVIGLDLSCSWLHG----SIPSNSSLFLLPYLETLNLGSNDFNSSL---ISS-------GFGRLISLTHLNLSNSYFSG   69 (816)
Q Consensus         4 ~~l~~L~L~~~~~~~----~~~~~~~~~~l~~L~~L~Ls~~~~~~~~---~~~-------~~~~l~~L~~L~Ls~n~~~~   69 (816)
                      ..+++|+|++|.+.-    .+..  .+.+.++|+.-++|+- +++..   +|+       ++..+++|++||||+|.+..
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~--~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAK--VLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHH--HHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            358999999999832    2333  5678889999999875 33321   332       35567899999999999876


Q ss_pred             cCchh----hhcCCCCCEEeCCCCCCccccCCcHHHH---------hhcCCCCCEEeCCCccCCCccchhhhhccCCCCc
Q 003488           70 QIPSE----ISQLSKMLSLDLSKNDEVRIESPVWKGL---------IENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLS  136 (816)
Q Consensus        70 ~~~~~----l~~l~~L~~L~Ls~n~~~~~~~~~~~~~---------l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~  136 (816)
                      ..++.    +.+++.|++|.|.+|.+.......+...         .+.-++||.+...+|.+.......          
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~----------  176 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA----------  176 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH----------
Confidence            55544    4679999999999997776554443322         233445555555555554433220          


Q ss_pred             EEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCC----CchhhhcCCCCCCEEEccCCcCCC----CCCccccCCCCcc
Q 003488          137 YLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSG----HIPSFLSHLKQLYYLNLEQNNLVG----GIPDSFVNLTQLS  208 (816)
Q Consensus       137 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~  208 (816)
                                  +...|...+.|+.+.++.|.|..    .....+..+++|+.|||.+|-++.    .+...+..+++|+
T Consensus       177 ------------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  177 ------------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR  244 (382)
T ss_pred             ------------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence                        11122333444444444444431    122344455555555555554432    1223344455555


Q ss_pred             EEEcccCCCCcCCcccC-----CCCCCCcEEECcCCCCCccc----chhhhhCCCCccEEEccCCcC
Q 003488          209 FLDLSWNQLTGRLPSCL-----KGLRNLVTLRLSGNSLNGTI----PSWLFTVLPYLEVIHLRDNRF  266 (816)
Q Consensus       209 ~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~l  266 (816)
                      .|++++|.+...-...+     ...++|+++.+.+|.++..-    ...+. ..|.|+.|++++|.+
T Consensus       245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~-ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA-EKPDLEKLNLNGNRL  310 (382)
T ss_pred             eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh-cchhhHHhcCCcccc
Confidence            55555555543222111     23456666666666654211    11112 256677777777766

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=3.1e-12  Score=133.16  Aligned_cols=191  Identities=29%  Similarity=0.419  Sum_probs=126.2

Q ss_pred             CeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCC
Q 003488          446 EFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANN  525 (816)
Q Consensus       446 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  525 (816)
                      ...|++.|++. ++|..+..+..|+.+.+..|.+. .+|...+++..|+.++|+.|+++ .+|..+..|+ |+.|-+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            34556666665 55555555556666666666665 45556666666666666666666 4555555554 666666666


Q ss_pred             cCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceee
Q 003488          526 RIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQY  605 (816)
Q Consensus       526 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~  605 (816)
                      +++ .+|+.++..+.|..|+.+.|.+....   ..++.+.+|+.|.+..|++.. +|.+..                   
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~slp---sql~~l~slr~l~vrRn~l~~-lp~El~-------------------  209 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQSLP---SQLGYLTSLRDLNVRRNHLED-LPEELC-------------------  209 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhhhch---HHhhhHHHHHHHHHhhhhhhh-CCHHHh-------------------
Confidence            665 35555666666666666666666552   355666667777777776652 333321                   


Q ss_pred             ccccccceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccc---cccCCCCe
Q 003488          606 MHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSL---RNLTVLES  682 (816)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~  682 (816)
                                             .-.|..||+|+|+++ .||-+|.+|+.|++|-|.+|.+. ..|..+   |+..--++
T Consensus       210 -----------------------~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKy  264 (722)
T KOG0532|consen  210 -----------------------SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKY  264 (722)
T ss_pred             -----------------------CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeee
Confidence                                   112567999999999 79999999999999999999998 667654   55566678


Q ss_pred             EeCCCCc
Q 003488          683 LDLSSNR  689 (816)
Q Consensus       683 L~Ls~N~  689 (816)
                      |+..-++
T Consensus       265 L~~qA~q  271 (722)
T KOG0532|consen  265 LSTQACQ  271 (722)
T ss_pred             ecchhcc
Confidence            8888875

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=3.4e-11  Score=115.56  Aligned_cols=133  Identities=32%  Similarity=0.353  Sum_probs=99.2

Q ss_pred             CCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccceeeE
Q 003488          537 QLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAF  616 (816)
Q Consensus       537 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  616 (816)
                      ..+.|++++|++|.|+...   ......|.++.|++|+|.+...-.      +                           
T Consensus       282 TWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~n------L---------------------------  325 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQN------L---------------------------  325 (490)
T ss_pred             hHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehh------h---------------------------
Confidence            3456677777777766652   345567778888888887763211      1                           


Q ss_pred             EEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCc-
Q 003488          617 FTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIP-  695 (816)
Q Consensus       617 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p-  695 (816)
                                ..+++|+.||||+|.++ .+-..-.++.+.+.|+|++|.+...  ..++++-+|+.||+++|++..... 
T Consensus       326 ----------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV  392 (490)
T KOG1259|consen  326 ----------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEV  392 (490)
T ss_pred             ----------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHh
Confidence                      14667788888888887 3444455678899999999999754  678999999999999999985543 


Q ss_pred             cccCCcCcCCeEeCccCccccCC
Q 003488          696 TQLTSLNFLSKLNLSHNQLEGPI  718 (816)
Q Consensus       696 ~~l~~l~~L~~L~ls~N~l~g~i  718 (816)
                      .++++++-|+.+.+.+|++++.+
T Consensus       393 ~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  393 NHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             cccccccHHHHHhhcCCCccccc
Confidence            56889999999999999999753

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=1.4e-10  Score=126.78  Aligned_cols=84  Identities=36%  Similarity=0.515  Sum_probs=43.3

Q ss_pred             ceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCcc
Q 003488          632 FLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSH  711 (816)
Q Consensus       632 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  711 (816)
                      |..+++++|.+. .++..+.++..+..+.+++|++. .+|..++.++++++|++++|.++...+  +..+.+|+.|++++
T Consensus       211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~  286 (394)
T COG4886         211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG  286 (394)
T ss_pred             hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence            344444555322 34444555555555555555554 224455555555555555555553332  55555555555555


Q ss_pred             CccccCCC
Q 003488          712 NQLEGPIP  719 (816)
Q Consensus       712 N~l~g~ip  719 (816)
                      |.++...|
T Consensus       287 n~~~~~~~  294 (394)
T COG4886         287 NSLSNALP  294 (394)
T ss_pred             ccccccch
Confidence            55554444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.6e-11  Score=122.64  Aligned_cols=136  Identities=29%  Similarity=0.367  Sum_probs=60.3

Q ss_pred             CCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccce
Q 003488          228 LRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY  307 (816)
Q Consensus       228 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  307 (816)
                      +++|+.|.++.|.++-.--.+....+|+|+.|++..|...........-+..|+.|+|++|++...-.......++.|+.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            34455555555555422222223335555555555553221222223334455555555555543322233445555555


Q ss_pred             eeCCCccccccccCCC-----CCCCcCccEEeccCCCCCCCCc--cccCCcccceeecccccc
Q 003488          308 LYLSQNRLSVNTKLDA-----NSTFPKLLKLGLSACNISEFPD--FLRSQDRLEWLQLSENKI  363 (816)
Q Consensus       308 L~L~~n~i~~~~~~~~-----~~~~~~L~~L~l~~~~l~~lp~--~l~~~~~L~~L~l~~n~l  363 (816)
                      |+++.+.+......+.     ...+++|+.|++..|++.+++.  .+..+++|+.|.+..|.+
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            5555554443332222     1234555555555555544432  222333444444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=2.2e-10  Score=125.19  Aligned_cols=201  Identities=34%  Similarity=0.463  Sum_probs=132.9

Q ss_pred             eEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCC-CccEEEccCCcccCCCCcccCCCCCCcEEECcCC
Q 003488          447 FIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS-GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANN  525 (816)
Q Consensus       447 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  525 (816)
                      .++++.|.+.... ........++.|++.+|.+.. ++....... +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4556666553222 223334566777777777763 333444443 6777777777777 45566777788888888888


Q ss_pred             cCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceee
Q 003488          526 RIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQY  605 (816)
Q Consensus       526 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~  605 (816)
                      +++.. |...+..+.|+.|++++|++....+   .......|+.+++++|++...+. .                     
T Consensus       174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~~l~~---~~~~~~~L~~l~~~~N~~~~~~~-~---------------------  227 (394)
T COG4886         174 DLSDL-PKLLSNLSNLNNLDLSGNKISDLPP---EIELLSALEELDLSNNSIIELLS-S---------------------  227 (394)
T ss_pred             hhhhh-hhhhhhhhhhhheeccCCccccCch---hhhhhhhhhhhhhcCCcceecch-h---------------------
Confidence            87753 3333367777788888887776632   11234447777888775321111 0                     


Q ss_pred             ccccccceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeC
Q 003488          606 MHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDL  685 (816)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L  685 (816)
                                          +..+..+..+.+++|++.. +|..++.++.++.|++++|.++. ++. ++.+.+++.||+
T Consensus       228 --------------------~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~  284 (394)
T COG4886         228 --------------------LSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDL  284 (394)
T ss_pred             --------------------hhhcccccccccCCceeee-ccchhccccccceeccccccccc-ccc-ccccCccCEEec
Confidence                                1144555666788888873 47788899999999999999984 444 889999999999


Q ss_pred             CCCcccccCccccC
Q 003488          686 SSNRLVGQIPTQLT  699 (816)
Q Consensus       686 s~N~l~~~~p~~l~  699 (816)
                      ++|.++...|....
T Consensus       285 s~n~~~~~~~~~~~  298 (394)
T COG4886         285 SGNSLSNALPLIAL  298 (394)
T ss_pred             cCccccccchhhhc
Confidence            99999987775544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1e-11  Score=119.15  Aligned_cols=180  Identities=21%  Similarity=0.252  Sum_probs=123.4

Q ss_pred             CCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhcCCCCC
Q 003488           31 YLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLK  110 (816)
Q Consensus        31 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~  110 (816)
                      .|++||||+..++...+-..+..|.+|+.|.|.++.+++.+...+++-.+|+.|+++.+.  .+...+....+.+|+.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccchhHHHHHHHhhhhHh
Confidence            599999999888765455678899999999999999999899999999999999999862  233356667789999999


Q ss_pred             EEeCCCccCCCccchhhhhccCCCCcEEEccCCcCC---CCCCccCCCCCCCCEEEccCCC-CCCCchhhhcCCCCCCEE
Q 003488          111 ELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLI---GPIPASLANLPQLTSLSLSYNH-FSGHIPSFLSHLKQLYYL  186 (816)
Q Consensus       111 ~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L  186 (816)
                      +|++++|..........+.+..++|+.|+++++.-.   ..+..-...+++|..|||++|. ++......|.+++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            999999998887766677777788888888876421   1111122446666666666543 333333344555556665


Q ss_pred             EccCCcCCCCCCcc---ccCCCCccEEEccc
Q 003488          187 NLEQNNLVGGIPDS---FVNLTQLSFLDLSW  214 (816)
Q Consensus       187 ~L~~n~l~~~~~~~---~~~l~~L~~L~L~~  214 (816)
                      .++.|-  +.+|..   +...|.|.+||+-+
T Consensus       344 SlsRCY--~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  344 SLSRCY--DIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             ehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence            555553  233332   23344444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=1.2e-10  Score=111.84  Aligned_cols=128  Identities=30%  Similarity=0.336  Sum_probs=64.8

Q ss_pred             CCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEE
Q 003488          181 KQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH  260 (816)
Q Consensus       181 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  260 (816)
                      +.|+++||++|.|+ .+.++..-.|.++.|++++|.+....  .++.+++|+.||+++|.++ .+..|-.. +-+.+.|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K-LGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLK-LGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhh-hcCEeeee
Confidence            44556666666554 33344455556666666666655321  2555556666666666554 44333333 55555555


Q ss_pred             ccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccc
Q 003488          261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL  315 (816)
Q Consensus       261 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i  315 (816)
                      ++.|.+...  ..++.+-+|..||+++|+|...-....++++|-|+.+.+.+|.+
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            555555311  23444455555555555554333334444444444444444433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.89  E-value=8.8e-10  Score=102.40  Aligned_cols=110  Identities=30%  Similarity=0.383  Sum_probs=36.9

Q ss_pred             ccCCCCccEEEcccCCCCcCCcccCC-CCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhh-hcCC
Q 003488          201 FVNLTQLSFLDLSWNQLTGRLPSCLK-GLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTI-FELV  278 (816)
Q Consensus       201 ~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~  278 (816)
                      +.+..++++|+|.+|.+..+  +.+. .+.+|+.|++++|.++ .++.  +..++.|++|++++|.++.. ...+ ..++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSI-SEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-T
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence            44556778888888888743  2354 5678888888888887 5543  33378888888888888743 3333 3577


Q ss_pred             CCCEEEcccCCCcCccccccccCCCccceeeCCCcccc
Q 003488          279 NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS  316 (816)
Q Consensus       279 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~  316 (816)
                      +|++|++++|++...-....+..+++|+.|++.+|++.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            88888888887775444556667777777777777653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.89  E-value=1.2e-09  Score=101.48  Aligned_cols=130  Identities=29%  Similarity=0.330  Sum_probs=50.7

Q ss_pred             hcCCCCCCEEEccCCcCCCCCCcccc-CCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCC
Q 003488          177 LSHLKQLYYLNLEQNNLVGGIPDSFV-NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY  255 (816)
Q Consensus       177 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  255 (816)
                      +.+..++++|+|.+|.|+..  +.++ .+.+|+.|++++|.+...  +.+..+++|++|++++|.++ .+...+...+|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            44556789999999998743  3454 578899999999999854  35788899999999999998 666555444899


Q ss_pred             ccEEEccCCcCCccC-chhhhcCCCCCEEEcccCCCcCccc--cccccCCCccceeeCC
Q 003488          256 LEVIHLRDNRFTGSI-PSTIFELVNLTSIRLSSNNLSGHIE--LCMFARLKNLQYLYLS  311 (816)
Q Consensus       256 L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L~  311 (816)
                      |++|++++|++...- -..+..+++|++|++.+|.+...-.  ...+..+|+|+.||-.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            999999999987422 2456788999999999998874322  1234566777776653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1.2e-09  Score=83.28  Aligned_cols=60  Identities=43%  Similarity=0.555  Sum_probs=38.8

Q ss_pred             CCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCccCcc
Q 003488          655 LLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL  714 (816)
Q Consensus       655 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  714 (816)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655445666666666666666666666666666666666666666654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=3.2e-10  Score=123.93  Aligned_cols=225  Identities=24%  Similarity=0.246  Sum_probs=122.3

Q ss_pred             ccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCc
Q 003488          439 FCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQ  518 (816)
Q Consensus       439 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  518 (816)
                      +..+.+|+.+++.+|.+... ...+..+++|++|++++|.++...  .+..++.|+.|++++|.++..  ..+..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhh
Confidence            34455566666666655522 211344555555555555555332  233344455555555555421  2333455555


Q ss_pred             EEECcCCcCCCCCc-ccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCC
Q 003488          519 VLNVANNRIDDTFP-HWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSN  597 (816)
Q Consensus       519 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~  597 (816)
                      .+++++|++...-+ . ...+.+++.+++.+|.+....    ....+..+..+++..|.++..-+..             
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n~i~~~~~l~-------------  227 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDNKISKLEGLN-------------  227 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc----chHHHHHHHHhhcccccceeccCcc-------------
Confidence            55555555544332 1 234444555555555444331    1122222333344444443211100             


Q ss_pred             CcccceeeccccccceeeEEEeecceecccccc--cceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCcccc
Q 003488          598 TSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILS--IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLR  675 (816)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  675 (816)
                                                    .+.  +|+.+++++|++. .++..+..+..+..|+++.|++...  ..+.
T Consensus       228 ------------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~  274 (414)
T KOG0531|consen  228 ------------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLE  274 (414)
T ss_pred             ------------------------------cchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cccc
Confidence                                          111  3677888888887 4446677788888899999888755  4456


Q ss_pred             ccCCCCeEeCCCCccccc---Cccc-cCCcCcCCeEeCccCccccCCC
Q 003488          676 NLTVLESLDLSSNRLVGQ---IPTQ-LTSLNFLSKLNLSHNQLEGPIP  719 (816)
Q Consensus       676 ~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~g~ip  719 (816)
                      ....+..+.++.|.+...   .... ....+.++...+.+|+.....+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            677788888888887732   1221 4566778888888887776554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=2.7e-09  Score=81.33  Aligned_cols=61  Identities=34%  Similarity=0.484  Sum_probs=56.7

Q ss_pred             ccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcc
Q 003488          630 SIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRL  690 (816)
Q Consensus       630 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  690 (816)
                      ++|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678999999999977778999999999999999999988888999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=1.1e-08  Score=119.37  Aligned_cols=271  Identities=24%  Similarity=0.225  Sum_probs=148.3

Q ss_pred             CcEEEEECCCCCCccccCCccccccCCCCCEEeCCCCC--CCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCC
Q 003488            4 GQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSND--FNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKM   81 (816)
Q Consensus         4 ~~l~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~--~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L   81 (816)
                      ..++++.+-++.+. .++.   -...+.|++|-+..|.  +... ..+.|..++.|++|||++|.--+.+|..++.+-+|
T Consensus       523 ~~~rr~s~~~~~~~-~~~~---~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAG---SSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             hheeEEEEeccchh-hccC---CCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            34666666666653 1222   1345578888877775  3331 33457788889999998887666888888888889


Q ss_pred             CEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCC--CCCCccCCCCCCC
Q 003488           82 LSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLI--GPIPASLANLPQL  159 (816)
Q Consensus        82 ~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~--~~~~~~l~~l~~L  159 (816)
                      |+|++++..+..++     ..+++++.|.+|++..+......+. ....+ ++|++|.+......  ...-..+.++.+|
T Consensus       598 ryL~L~~t~I~~LP-----~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L-~~Lr~L~l~~s~~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  598 RYLDLSDTGISHLP-----SGLGNLKKLIYLNLEVTGRLESIPG-ILLEL-QSLRVLRLPRSALSNDKLLLKELENLEHL  670 (889)
T ss_pred             hcccccCCCccccc-----hHHHHHHhhheeccccccccccccc-hhhhc-ccccEEEeeccccccchhhHHhhhcccch
Confidence            98888888766544     3477888888888887765444432 33445 77888877654311  1122233444555


Q ss_pred             CEEEccCCCCCCCchhhhcCCCCCC----EEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCC------CC
Q 003488          160 TSLSLSYNHFSGHIPSFLSHLKQLY----YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKG------LR  229 (816)
Q Consensus       160 ~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~  229 (816)
                      +.+.......  .+-..+..+..|+    .+.+.++... ..+..+..+.+|+.|.+.++.+..........      ++
T Consensus       671 ~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~  747 (889)
T KOG4658|consen  671 ENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP  747 (889)
T ss_pred             hhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence            5554433222  1111222222222    2222222222 34455677778888888877765332222111      12


Q ss_pred             CCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCc
Q 003488          230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS  291 (816)
Q Consensus       230 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  291 (816)
                      ++..+...++... ..+.+..- .|+|+.|.+..+.....+.+....+..+..+.+..+.+.
T Consensus       748 ~l~~~~~~~~~~~-r~l~~~~f-~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  748 NLSKVSILNCHML-RDLTWLLF-APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             HHHHHHhhccccc-cccchhhc-cCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            2333333333222 12222211 577777777777665555555555555555444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=2.8e-09  Score=116.47  Aligned_cols=248  Identities=27%  Similarity=0.257  Sum_probs=142.3

Q ss_pred             CCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchhhccCCCccc
Q 003488          301 RLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLY  380 (816)
Q Consensus       301 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  380 (816)
                      .+..++.+.+..|.+..  .......+.+++.+++.+|.+..+...+..+++|++|++++|.|+...+-.    .++.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchh
Confidence            34455555566664432  112233455566666666666555544455555555555555555433322    223345


Q ss_pred             eEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCccccccc-ccccCCCCCCeEeCCCCCCCCCC
Q 003488          381 NLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIP-CSFCTAAPIEFIDLSNNSLSGPI  459 (816)
Q Consensus       381 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~  459 (816)
                      .|++++|.++.+....                    .++.|+.+++++|.++..-+ . ...+.+++.+++.+|.+..  
T Consensus       144 ~L~l~~N~i~~~~~~~--------------------~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--  200 (414)
T KOG0531|consen  144 ELNLSGNLISDISGLE--------------------SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--  200 (414)
T ss_pred             hheeccCcchhccCCc--------------------cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--
Confidence            5555555554444331                    24555555566666554433 2 3556677778888887752  


Q ss_pred             CchhhccCCCCEEEccCCcCccCCCccccCCC--CccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccC
Q 003488          460 PECLVDSITLIWLDLHLNSFNGSIPQISANGS--GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQ  537 (816)
Q Consensus       460 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  537 (816)
                      ...+..+..+..+++..|.++..-+  +..+.  .|+.+++.+|++. ..+..+..+..+..|++.+|++...-  .+..
T Consensus       201 i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~  275 (414)
T KOG0531|consen  201 IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLER  275 (414)
T ss_pred             ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccc
Confidence            2233334445555777777764322  22223  3788888888887 33356777888888899888876532  3455


Q ss_pred             CCCCcEEEccCcccccccCCCcc--cccCCCCceeeCCCCcccccCc
Q 003488          538 LPELLVLILRSNKFYGLIGNTDA--RVIFPKLRILDLSRNEFTGVLP  582 (816)
Q Consensus       538 l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~Ls~N~l~~~~p  582 (816)
                      .+.+..+....|++.........  ....+.++.+.+..|++....+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            66777777777777643221222  4566788888888888876554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.69  E-value=1.6e-08  Score=117.88  Aligned_cols=203  Identities=27%  Similarity=0.300  Sum_probs=108.7

Q ss_pred             CCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCc--CCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEE
Q 003488          157 PQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNN--LVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTL  234 (816)
Q Consensus       157 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  234 (816)
                      ...+...+.+|.+... +.. ..+++|++|-+.+|.  +.....+.|..++.|++||+++|.-.+.+|..++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            4555566655555422 222 123456666666664  333333446667777777777666555677777777777777


Q ss_pred             ECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCc-CccccccccCCCccceeeCCCc
Q 003488          235 RLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS-GHIELCMFARLKNLQYLYLSQN  313 (816)
Q Consensus       235 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n  313 (816)
                      ++++..+. .+|..+.. +..|.+|++..+.-...+|.....+++|++|.+...... +......+.++.+|+.+.....
T Consensus       601 ~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             cccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            77777766 66766655 677777777766655455555566777777776554311 1112223344444444444332


Q ss_pred             cccccccCCCCCCCcCcc----EEeccCCCCCCCCccccCCcccceeecccccccCC
Q 003488          314 RLSVNTKLDANSTFPKLL----KLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGR  366 (816)
Q Consensus       314 ~i~~~~~~~~~~~~~~L~----~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~  366 (816)
                      ..   .........++|.    .+.+.++.....+..+..+.+|+.|.+.++.+...
T Consensus       679 s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  679 SV---LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI  732 (889)
T ss_pred             hh---HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence            11   0001111122222    22222333344445566667777777777766543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.45  E-value=2.3e-09  Score=115.00  Aligned_cols=58  Identities=36%  Similarity=0.408  Sum_probs=29.1

Q ss_pred             CCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCccc
Q 003488          516 RLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFT  578 (816)
Q Consensus       516 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~  578 (816)
                      .|...+.+.|++.- ..+.+.-++.|+.|+|++|+++..    +.+..++.|++|||++|.++
T Consensus       165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~  222 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLR  222 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhc
Confidence            34455555555542 223344455555555555555544    23444555555555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.45  E-value=9.8e-09  Score=87.42  Aligned_cols=59  Identities=24%  Similarity=0.384  Sum_probs=35.5

Q ss_pred             cceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCccc
Q 003488          631 IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV  691 (816)
Q Consensus       631 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  691 (816)
                      .++.++|++|.|+ .+|.++..++.|+.||++.|.+. ..|..+..|.+|..||.-+|.+.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            3445566666666 45666666666666666666665 44555555666666666666555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.34  E-value=1.1e-07  Score=90.57  Aligned_cols=161  Identities=25%  Similarity=0.264  Sum_probs=81.7

Q ss_pred             cCCCCCCCCEEEccCCCCCCCchh----hhcCCCCCCEEEccCCcCCCCCCc-------------cccCCCCccEEEccc
Q 003488          152 SLANLPQLTSLSLSYNHFSGHIPS----FLSHLKQLYYLNLEQNNLVGGIPD-------------SFVNLTQLSFLDLSW  214 (816)
Q Consensus       152 ~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~L~~  214 (816)
                      ++.+||+|+..+||.|.+....|.    .+++-+.|++|.+++|.+--.--.             -.++-|.|++.+...
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            344556666666666655543332    334555666666666654311100             113446677777777


Q ss_pred             CCCCcCCcc-----cCCCCCCCcEEECcCCCCCcc-----cchhhhhCCCCccEEEccCCcCCcc----CchhhhcCCCC
Q 003488          215 NQLTGRLPS-----CLKGLRNLVTLRLSGNSLNGT-----IPSWLFTVLPYLEVIHLRDNRFTGS----IPSTIFELVNL  280 (816)
Q Consensus       215 n~l~~~~~~-----~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L  280 (816)
                      |++.. .+.     .+.....|+++.+..|.|.-.     +...++. +.+|+.||+..|.++-.    +...+...+.|
T Consensus       167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            76652 221     123335677777777766421     0112222 56777777777766522    22333445566


Q ss_pred             CEEEcccCCCcCccccccc-----cCCCccceeeCCCcc
Q 003488          281 TSIRLSSNNLSGHIELCMF-----ARLKNLQYLYLSQNR  314 (816)
Q Consensus       281 ~~L~L~~n~l~~~~~~~~~-----~~l~~L~~L~L~~n~  314 (816)
                      +.|.+..|-++..-....+     ...++|..|...+|.
T Consensus       245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             hhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence            7777777765532221111     123556666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=1.6e-08  Score=108.73  Aligned_cols=200  Identities=31%  Similarity=0.325  Sum_probs=131.2

Q ss_pred             CCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCC-CCCCEEEccCCCCCCCchhhhcC-----
Q 003488          106 LTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANL-PQLTSLSLSYNHFSGHIPSFLSH-----  179 (816)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~-----  179 (816)
                      +++++.|.+-...-.+......+..+ .+|++|.+.+|.+...  ..+..+ .+|++|..++ .+. .....|..     
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF-~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~  157 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPF-RSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLD-ALRHVFASCGGDI  157 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccc-cceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHH-HHHHHHHHhcccc
Confidence            44444444443332222212255666 7888888888877531  112111 2455553332 211 01111111     


Q ss_pred             -----CCCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCC
Q 003488          180 -----LKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP  254 (816)
Q Consensus       180 -----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  254 (816)
                           ...|...+.++|.+. ....++.-++.|+.|+|++|+++...  .+..|++|++||+++|.+. .+|..-..++.
T Consensus       158 ~ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~  233 (1096)
T KOG1859|consen  158 SNSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK  233 (1096)
T ss_pred             ccchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh
Confidence                 135777888888876 45567788889999999999988543  6788899999999999887 77764433344


Q ss_pred             CccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccc
Q 003488          255 YLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV  317 (816)
Q Consensus       255 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~  317 (816)
                       |+.|.+++|.++..  ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+..
T Consensus       234 -L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  234 -LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             -heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence             89999999988733  4567888999999999988876666667778889999999997643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=2.8e-08  Score=95.93  Aligned_cols=133  Identities=23%  Similarity=0.199  Sum_probs=76.7

Q ss_pred             CCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCC-CcCccccccccCCCcccee
Q 003488          230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNN-LSGHIELCMFARLKNLQYL  308 (816)
Q Consensus       230 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L  308 (816)
                      .|+++||++..++..--..+.+.+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+. ++..-..-.+.+|+.|++|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466667766666533333444456777777777777776666667777777777777653 2221112345677777777


Q ss_pred             eCCCccccccccCCCCC-CCcCccEEeccCCC----CCCCCccccCCcccceeeccccc
Q 003488          309 YLSQNRLSVNTKLDANS-TFPKLLKLGLSACN----ISEFPDFLRSQDRLEWLQLSENK  362 (816)
Q Consensus       309 ~L~~n~i~~~~~~~~~~-~~~~L~~L~l~~~~----l~~lp~~l~~~~~L~~L~l~~n~  362 (816)
                      ++++|.+.......... .-++|+.|+++++.    ...+......+++|.+||+++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            77777543222111111 23466677777662    12333345567777777777664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=2e-07  Score=90.11  Aligned_cols=84  Identities=35%  Similarity=0.366  Sum_probs=40.9

Q ss_pred             CCCcEEEccCCcCCC--CCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCC-CCccccCCCCccE
Q 003488          133 SSLSYLHLTGCNLIG--PIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG-IPDSFVNLTQLSF  209 (816)
Q Consensus       133 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  209 (816)
                      +.++++||.+|.++.  .+...+.++|.|+.|+|+.|++...+...-..+.+|++|.|.+..+... ....+..+|.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            444444444444431  1223344556666666666655533322113445666666666555422 2223455666666


Q ss_pred             EEcccCC
Q 003488          210 LDLSWNQ  216 (816)
Q Consensus       210 L~L~~n~  216 (816)
                      |.++.|.
T Consensus       151 lHmS~N~  157 (418)
T KOG2982|consen  151 LHMSDNS  157 (418)
T ss_pred             hhhccch
Confidence            6666663

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=2.9e-07  Score=89.00  Aligned_cols=187  Identities=23%  Similarity=0.269  Sum_probs=89.5

Q ss_pred             CCCCCCEEEccCCcCCC--CCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCc
Q 003488          179 HLKQLYYLNLEQNNLVG--GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL  256 (816)
Q Consensus       179 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  256 (816)
                      .++.++++||.+|.++.  .+...+.++|.|++|+++.|++...+...=....+|++|-|.+..+.-.-.......+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            34556666666665541  2223345566666666666665532221112445566666655544322223333345666


Q ss_pred             cEEEccCCcCCccC--chhhhc-CCCCCEEEcccCCCcCccccc-cccCCCccceeeCCCccccccccCCCCCCCcCccE
Q 003488          257 EVIHLRDNRFTGSI--PSTIFE-LVNLTSIRLSSNNLSGHIELC-MFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK  332 (816)
Q Consensus       257 ~~L~l~~n~l~~~~--~~~l~~-l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~  332 (816)
                      ++|.++.|.+....  ...... -+.++++....|...-..... .-.-++++..+.+..|.+...........+|.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            66666666322100  000111 123344444333322111100 11234566666666665554444444555666666


Q ss_pred             EeccCCCCCCCC--ccccCCcccceeecccccccC
Q 003488          333 LGLSACNISEFP--DFLRSQDRLEWLQLSENKIYG  365 (816)
Q Consensus       333 L~l~~~~l~~lp--~~l~~~~~L~~L~l~~n~l~~  365 (816)
                      |.++.+++.++.  +.+..++.|..|.++++.+.+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            667666666543  245566667777776666553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.21  E-value=5.2e-08  Score=98.66  Aligned_cols=278  Identities=20%  Similarity=0.121  Sum_probs=127.0

Q ss_pred             CCCEEeCCCCCCCCC-CCCccccCCCCCCEEECCCCC-CCccCchhh-hcCCCCCEEeCCCCCCccccCCcHHHHhhcCC
Q 003488           31 YLETLNLGSNDFNSS-LISSGFGRLISLTHLNLSNSY-FSGQIPSEI-SQLSKMLSLDLSKNDEVRIESPVWKGLIENLT  107 (816)
Q Consensus        31 ~L~~L~Ls~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~  107 (816)
                      .|+.|.+.++.-.+. .+-....+++++.+|.+.++. +++..-..+ ..+++|++|++..+  ..+.+..+......|+
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c--~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC--SSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc--chhHHHHHHHHHHhhh
Confidence            466666666643222 122344566777777776664 332222223 35677777777664  1122233333455677


Q ss_pred             CCCEEeCCCccC-CCccchhhhhccCCCCcEEEccCCcCCCCCCccC----CCCCCCCEEEccCCC-CCCCc-hhhhcCC
Q 003488          108 KLKELVLSEVDM-STIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASL----ANLPQLTSLSLSYNH-FSGHI-PSFLSHL  180 (816)
Q Consensus       108 ~L~~L~l~~~~~-~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l  180 (816)
                      +|++++++++.- ++.......... ..++.+.+.+|.=.+  ..++    +.+..+.++++..+. ++... ...-..+
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~-~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGC-KELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccc-hhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            777777777642 332222222333 445555555542110  1111    233445555554442 22211 1112345


Q ss_pred             CCCCEEEccCCcCCCC-CCcc-ccCCCCccEEEcccCCC-CcCCcccC-CCCCCCcEEECcCCCCCccc-chhhhhCCCC
Q 003488          181 KQLYYLNLEQNNLVGG-IPDS-FVNLTQLSFLDLSWNQL-TGRLPSCL-KGLRNLVTLRLSGNSLNGTI-PSWLFTVLPY  255 (816)
Q Consensus       181 ~~L~~L~L~~n~l~~~-~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~  255 (816)
                      ..|+.|+.+++.-.+. .-.+ -.++++|+.+-++.++- +..--..+ .+++.|+.+++..+...... -..+..+++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            5666666665532111 1111 24456666666666642 11100111 24455666666655432111 1122334566


Q ss_pred             ccEEEccCCcCC-ccC----chhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCc
Q 003488          256 LEVIHLRDNRFT-GSI----PSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN  313 (816)
Q Consensus       256 L~~L~l~~n~l~-~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  313 (816)
                      |+.+.++.|... +..    ...-.....+..+.++++.....-....+..+++|+.+++.++
T Consensus       374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            666666655432 110    0111233456666666665543333344555666666665555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.07  E-value=2.4e-07  Score=94.00  Aligned_cols=86  Identities=23%  Similarity=0.290  Sum_probs=45.3

Q ss_pred             CCCEEECCCCCCCccCc--hhhhcCCCCCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCc-cCCCccchhhhhccC
Q 003488           56 SLTHLNLSNSYFSGQIP--SEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEV-DMSTIVLDYSLTNLS  132 (816)
Q Consensus        56 ~L~~L~Ls~n~~~~~~~--~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l~  132 (816)
                      .|+.|.+.++.-.+.-+  ..-.+++++++|.+.++.  .+.+..+...-+.|++|+++++..| .++..... .+..-+
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk-~la~gC  215 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK-YLAEGC  215 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHHH-HHHHhh
Confidence            46666666665332211  223456666666666653  4444455555556666666666663 33433333 333333


Q ss_pred             CCCcEEEccCCc
Q 003488          133 SSLSYLHLTGCN  144 (816)
Q Consensus       133 ~~L~~L~L~~n~  144 (816)
                      ++|++|++++|.
T Consensus       216 ~kL~~lNlSwc~  227 (483)
T KOG4341|consen  216 RKLKYLNLSWCP  227 (483)
T ss_pred             hhHHHhhhccCc
Confidence            666666666653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=5.3e-06  Score=57.56  Aligned_cols=36  Identities=42%  Similarity=0.643  Sum_probs=17.0

Q ss_pred             CCcEEEccCCcCcccCCccccccCCCCeEeCCCCccc
Q 003488          655 LLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV  691 (816)
Q Consensus       655 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  691 (816)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555554 33444555555555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=6.5e-05  Score=78.83  Aligned_cols=57  Identities=18%  Similarity=0.183  Sum_probs=32.1

Q ss_pred             hhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCC
Q 003488          463 LVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANN  525 (816)
Q Consensus       463 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  525 (816)
                      +..+..++.|++++|.++ .+|.   -.++|+.|.+++|.--..+|..+  .++|+.|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            334567777777777665 3342   12357777776643323445433  246666666666

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.86  E-value=5.6e-07  Score=76.95  Aligned_cols=113  Identities=29%  Similarity=0.408  Sum_probs=69.9

Q ss_pred             CCcEEEccCCcCCCCCCc---cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 003488          134 SLSYLHLTGCNLIGPIPA---SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFL  210 (816)
Q Consensus       134 ~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  210 (816)
                      .+..++|+.|.+. .+++   .+.....|+..+|++|.+....+..-.+.+.++.+++++|.++ .+|..++.++.|+.|
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            3445566666543 1222   2334455666677777776433333344557777777777776 556667777777777


Q ss_pred             EcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhh
Q 003488          211 DLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLF  250 (816)
Q Consensus       211 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  250 (816)
                      +++.|.+. ..|..+..+.++-.|+..+|.+. .+|..++
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~  143 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF  143 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence            77777776 55666666777777777777665 5665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=6.9e-06  Score=93.76  Aligned_cols=108  Identities=24%  Similarity=0.274  Sum_probs=46.7

Q ss_pred             CCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCC-CCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCE
Q 003488          107 TKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGP-IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYY  185 (816)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  185 (816)
                      .+|++|++++...........++...|+|++|.+.+-.+... ......++++|..||+|+.+++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            345555555443333222223333335555555554333211 112223445555555555555433  44455555555


Q ss_pred             EEccCCcCCC-CCCccccCCCCccEEEcccCC
Q 003488          186 LNLEQNNLVG-GIPDSFVNLTQLSFLDLSWNQ  216 (816)
Q Consensus       186 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~  216 (816)
                      |.+.+=.+.. ..-..+.++++|+.||+|...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            5554443331 111223344555555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.85  E-value=1.1e-05  Score=77.41  Aligned_cols=235  Identities=17%  Similarity=0.159  Sum_probs=167.0

Q ss_pred             CcEEEEECCCCCCccc----cCCccccccCCCCCEEeCCCCCCCCCC----------CCccccCCCCCCEEECCCCCCCc
Q 003488            4 GQVIGLDLSCSWLHGS----IPSNSSLFLLPYLETLNLGSNDFNSSL----------ISSGFGRLISLTHLNLSNSYFSG   69 (816)
Q Consensus         4 ~~l~~L~L~~~~~~~~----~~~~~~~~~l~~L~~L~Ls~~~~~~~~----------~~~~~~~l~~L~~L~Ls~n~~~~   69 (816)
                      ..++.++||+|.+..+    +..  .+.+-++|+..+++.-. ++..          +..++.+|++|+..+||.|.|..
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~--~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCN--VIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHH--HHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            4589999999998532    223  56678889999998753 2210          22357789999999999999987


Q ss_pred             cCch----hhhcCCCCCEEeCCCCCCccccCCcHHHH---------hhcCCCCCEEeCCCccCCCccchh---hhhccCC
Q 003488           70 QIPS----EISQLSKMLSLDLSKNDEVRIESPVWKGL---------IENLTKLKELVLSEVDMSTIVLDY---SLTNLSS  133 (816)
Q Consensus        70 ~~~~----~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~---------l~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~  133 (816)
                      ..|.    .+++-+.|++|.+++|.+-.+..+.+...         .++-+.|+......|.+.......   .+..- .
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh-~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH-E  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-c
Confidence            7664    45678999999999998877665554422         346789999999999886554321   22222 6


Q ss_pred             CCcEEEccCCcCCCCC-----CccCCCCCCCCEEEccCCCCCCC----chhhhcCCCCCCEEEccCCcCCCCCCccc---
Q 003488          134 SLSYLHLTGCNLIGPI-----PASLANLPQLTSLSLSYNHFSGH----IPSFLSHLKQLYYLNLEQNNLVGGIPDSF---  201 (816)
Q Consensus       134 ~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---  201 (816)
                      .|+++.+..|.|...-     -..+..+.+|+.|||..|.++..    ...++...+.|++|.+.+|-++.....++   
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            8999999999876331     11335678999999999998743    23455667789999999998875443332   


Q ss_pred             ---cCCCCccEEEcccCCCCcCCccc-----C--CCCCCCcEEECcCCCCC
Q 003488          202 ---VNLTQLSFLDLSWNQLTGRLPSC-----L--KGLRNLVTLRLSGNSLN  242 (816)
Q Consensus       202 ---~~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~l~~n~l~  242 (816)
                         ...|+|..|...+|.+.+.+-..     +  ..++-|..|.+.+|++.
T Consensus       266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence               24688999999998765422111     1  35677888888888886

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.7e-05  Score=55.01  Aligned_cols=37  Identities=27%  Similarity=0.453  Sum_probs=32.2

Q ss_pred             cceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcc
Q 003488          631 IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG  668 (816)
Q Consensus       631 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  668 (816)
                      +|++|++++|+|+ .+|.++++|++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            5789999999999 577789999999999999999984

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=0.0002  Score=75.24  Aligned_cols=13  Identities=15%  Similarity=0.253  Sum_probs=6.3

Q ss_pred             CCccceeeCCCcc
Q 003488          302 LKNLQYLYLSQNR  314 (816)
Q Consensus       302 l~~L~~L~L~~n~  314 (816)
                      +.+++.|++++|.
T Consensus        51 ~~~l~~L~Is~c~   63 (426)
T PRK15386         51 ARASGRLYIKDCD   63 (426)
T ss_pred             hcCCCEEEeCCCC
Confidence            3445555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.67  E-value=7.7e-05  Score=68.76  Aligned_cols=58  Identities=34%  Similarity=0.378  Sum_probs=26.2

Q ss_pred             CccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcC
Q 003488          206 QLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF  266 (816)
Q Consensus       206 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  266 (816)
                      +...+||++|.+...  ..|..++.|.+|.+.+|+|+ .|...+...+|+|..|.+.+|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcch
Confidence            344455555554321  23444455555555555554 33333333344444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.65  E-value=7.5e-05  Score=68.83  Aligned_cols=84  Identities=27%  Similarity=0.350  Sum_probs=45.6

Q ss_pred             CCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCcccee
Q 003488          229 RNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL  308 (816)
Q Consensus       229 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  308 (816)
                      .+...+||++|.+. .++.  +..++.|..|.+.+|+|+..-|.--.-+++|..|.+.+|.+....+...+..|++|++|
T Consensus        42 d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            34556667766654 3322  33366666666666666644444333445566666666665543333445555555555


Q ss_pred             eCCCccc
Q 003488          309 YLSQNRL  315 (816)
Q Consensus       309 ~L~~n~i  315 (816)
                      .+-+|++
T Consensus       119 tll~Npv  125 (233)
T KOG1644|consen  119 TLLGNPV  125 (233)
T ss_pred             eecCCch
Confidence            5555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.63  E-value=2.5e-05  Score=89.21  Aligned_cols=152  Identities=21%  Similarity=0.263  Sum_probs=108.7

Q ss_pred             CCCCEEECCCCC-CCccCchhhh-cCCCCCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCccCCCccchhhhhccC
Q 003488           55 ISLTHLNLSNSY-FSGQIPSEIS-QLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLS  132 (816)
Q Consensus        55 ~~L~~L~Ls~n~-~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  132 (816)
                      .+|++||+++.. +....|..++ .+|+|++|.+++-.+..   ..|.....++++|..||+|+++++...   .++++ 
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl~---GIS~L-  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNLS---GISRL-  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCcH---HHhcc-
Confidence            689999998864 3334556666 47999999998753433   447778889999999999999988773   78888 


Q ss_pred             CCCcEEEccCCcCCC-CCCccCCCCCCCCEEEccCCCCCCCc--h----hhhcCCCCCCEEEccCCcCCCCCCccc-cCC
Q 003488          133 SSLSYLHLTGCNLIG-PIPASLANLPQLTSLSLSYNHFSGHI--P----SFLSHLKQLYYLNLEQNNLVGGIPDSF-VNL  204 (816)
Q Consensus       133 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~--~----~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l  204 (816)
                      ++|++|.+.+=.+.. ..-..+.++++|+.||+|........  .    +.-..+++||.||.+++.+.+..-+.+ ...
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH  274 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH  274 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence            899999988766653 22235678999999999986554221  1    223468999999999988875443333 345


Q ss_pred             CCccEEEcc
Q 003488          205 TQLSFLDLS  213 (816)
Q Consensus       205 ~~L~~L~L~  213 (816)
                      ++|+.+..-
T Consensus       275 ~~L~~i~~~  283 (699)
T KOG3665|consen  275 PNLQQIAAL  283 (699)
T ss_pred             ccHhhhhhh
Confidence            556555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.43  E-value=0.00039  Score=62.35  Aligned_cols=58  Identities=19%  Similarity=0.205  Sum_probs=18.2

Q ss_pred             CCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEc
Q 003488          153 LANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL  212 (816)
Q Consensus       153 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  212 (816)
                      |.++++|+.+.+.. .+.......|..+++|+.+.+.++ +......+|.++++++.+.+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence            34444444444432 233222333444444444444332 32222333444434444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.38  E-value=0.0005  Score=61.64  Aligned_cols=123  Identities=21%  Similarity=0.252  Sum_probs=50.9

Q ss_pred             hhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCC
Q 003488          175 SFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP  254 (816)
Q Consensus       175 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  254 (816)
                      .+|..+++|+.+.+.. .+......+|.++++|+.+.+..+ +.......|.++++++.+.+.+ .+. .++...+..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            3455666666666653 344444455666666666666554 4444445566666666666654 332 44455555566


Q ss_pred             CccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCcc
Q 003488          255 YLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNL  305 (816)
Q Consensus       255 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  305 (816)
                      +|+.+++..+ +.......+.++ +++.+.+.. .+. .++...|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            6666666544 333333445554 666666554 222 3444556655554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.16  E-value=7.6e-05  Score=84.27  Aligned_cols=114  Identities=25%  Similarity=0.236  Sum_probs=49.5

Q ss_pred             CCCCCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCc-cCCCccc--hhhhhccCCCCcEEEccCCc-CCCCCCccC
Q 003488           78 LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEV-DMSTIVL--DYSLTNLSSSLSYLHLTGCN-LIGPIPASL  153 (816)
Q Consensus        78 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~--~~~~~~l~~~L~~L~L~~n~-l~~~~~~~l  153 (816)
                      ++.|+.|.+..+..  +....+......+++|++|+++.+ .......  ...+...+++|+.|+++.+. ++...-..+
T Consensus       187 ~~~L~~l~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSK--ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhccccc--CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            45555555554411  111223344555556666665542 1111111  00122222556666666555 332222222


Q ss_pred             CC-CCCCCEEEccCCC-CCCCch-hhhcCCCCCCEEEccCCcC
Q 003488          154 AN-LPQLTSLSLSYNH-FSGHIP-SFLSHLKQLYYLNLEQNNL  193 (816)
Q Consensus       154 ~~-l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l  193 (816)
                      +. +++|++|.+.++. ++...- .....++.|++|+++++..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            22 5566666655554 332211 2234455666666665544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.89  E-value=0.00088  Score=64.82  Aligned_cols=91  Identities=22%  Similarity=0.242  Sum_probs=63.6

Q ss_pred             ccccCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCC--CCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHH
Q 003488           25 SLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNS--YFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGL  102 (816)
Q Consensus        25 ~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~  102 (816)
                      -.-.+..|+.|.+.+..++..   ..+-.+++|+.|.++.|  ++.+.++....++++|++|++++|++..+...   .-
T Consensus        38 l~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl---~p  111 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL---RP  111 (260)
T ss_pred             ccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc---ch
Confidence            344677788888887776542   34667889999999999  66666666667779999999999977653321   12


Q ss_pred             hhcCCCCCEEeCCCccCCC
Q 003488          103 IENLTKLKELVLSEVDMST  121 (816)
Q Consensus       103 l~~l~~L~~L~l~~~~~~~  121 (816)
                      ++.+.+|..|++..|..+.
T Consensus       112 l~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcchhhhhcccCCccc
Confidence            5566677777777765544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.68  E-value=0.00044  Score=78.07  Aligned_cols=239  Identities=24%  Similarity=0.211  Sum_probs=133.5

Q ss_pred             cCCCCCEEeCCCCCC-CCCCCCccccCCCCCCEEECCCC-CCCccCc----hhhhcCCCCCEEeCCCCCCccccCCcHHH
Q 003488           28 LLPYLETLNLGSNDF-NSSLISSGFGRLISLTHLNLSNS-YFSGQIP----SEISQLSKMLSLDLSKNDEVRIESPVWKG  101 (816)
Q Consensus        28 ~l~~L~~L~Ls~~~~-~~~~~~~~~~~l~~L~~L~Ls~n-~~~~~~~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~  101 (816)
                      .++.|+.|.+..+.- ....+-.....++.|+.|+++++ ......+    .....+++|+.|+++++..  +.+..+..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--isd~~l~~  263 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL--VTDIGLSA  263 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc--cCchhHHH
Confidence            478899998888743 32212345668899999999873 2211212    2344678999999988753  33455555


Q ss_pred             HhhcCCCCCEEeCCCcc-CCCccchhhhhccCCCCcEEEccCCcCCCC--CCccCCCCCCCCEEEccCCCCCCCchhhhc
Q 003488          102 LIENLTKLKELVLSEVD-MSTIVLDYSLTNLSSSLSYLHLTGCNLIGP--IPASLANLPQLTSLSLSYNHFSGHIPSFLS  178 (816)
Q Consensus       102 ~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  178 (816)
                      ....|++|++|.+..+. +++.... .+...++.|++|++++|.....  +.....++++++.|.+....-         
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~-~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------  333 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLV-SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------  333 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHH-HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------
Confidence            55668999999988887 5777666 4444448899999998865421  222234466666655433221         


Q ss_pred             CCCCCCEEEccCCcCC---CCCCccccCCCCccEEEcccCCCCcCC-cccCCCCCCCcEEECcCCCCCcccchhhhhCCC
Q 003488          179 HLKQLYYLNLEQNNLV---GGIPDSFVNLTQLSFLDLSWNQLTGRL-PSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP  254 (816)
Q Consensus       179 ~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  254 (816)
                       +..++.+.+......   .........+++++.+.+..+...... ...+.+++.|. ..+...          .....
T Consensus       334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~~~  401 (482)
T KOG1947|consen  334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCRSD  401 (482)
T ss_pred             -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hccCC
Confidence             344444444433221   122233466777777777777633222 23345555552 211111          11122


Q ss_pred             CccEEEccCCcCCc-cCchhhhc-CCCCCEEEcccCCC
Q 003488          255 YLEVIHLRDNRFTG-SIPSTIFE-LVNLTSIRLSSNNL  290 (816)
Q Consensus       255 ~L~~L~l~~n~l~~-~~~~~l~~-l~~L~~L~L~~n~l  290 (816)
                      .++.|+++.+.... ..-..... +..++.+++.++..
T Consensus       402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             ccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            26777777765431 11111111 55666666666643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.00013  Score=70.54  Aligned_cols=88  Identities=23%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             cCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhcCC
Q 003488           28 LLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLT  107 (816)
Q Consensus        28 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~  107 (816)
                      .+.+.+.|+..+|++++.   ....+|+.|++|.||-|.|+..-|  +..|++|+.|.|..|.|.++++   -..+++++
T Consensus        17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE---L~YLknlp   88 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE---LEYLKNLP   88 (388)
T ss_pred             HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH---HHHHhcCc
Confidence            456677888888887664   234578888888888888874433  6678888888888887766543   23366777


Q ss_pred             CCCEEeCCCccCCCcc
Q 003488          108 KLKELVLSEVDMSTIV  123 (816)
Q Consensus       108 ~L~~L~l~~~~~~~~~  123 (816)
                      +|+.|.|..|...+..
T Consensus        89 sLr~LWL~ENPCc~~a  104 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEA  104 (388)
T ss_pred             hhhhHhhccCCccccc
Confidence            7777777777666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.46  E-value=0.0022  Score=62.12  Aligned_cols=66  Identities=26%  Similarity=0.336  Sum_probs=33.6

Q ss_pred             CCCCCcEEECcCC--cCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccc
Q 003488          513 NCSRLQVLNVANN--RIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTG  579 (816)
Q Consensus       513 ~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  579 (816)
                      .+++|+.|+++.|  ++.+..+.....+|+|++|++++|++... ........+++|..||+.+|..+.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchhhhhcccCCccc
Confidence            3445555555555  33333333333445555555555555432 112234455667777777776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.00023  Score=68.85  Aligned_cols=83  Identities=27%  Similarity=0.370  Sum_probs=64.0

Q ss_pred             CCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccce
Q 003488          228 LRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY  307 (816)
Q Consensus       228 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  307 (816)
                      +.+.+.|++.+|.++ .|  .++..++.|+.|.|+-|.++..  ..+..|++|++|.|..|.|...-+...+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            446677888888776 33  3455688999999999988744  347788899999999998886555667888899999


Q ss_pred             eeCCCccc
Q 003488          308 LYLSQNRL  315 (816)
Q Consensus       308 L~L~~n~i  315 (816)
                      |+|..|..
T Consensus        93 LWL~ENPC  100 (388)
T KOG2123|consen   93 LWLDENPC  100 (388)
T ss_pred             HhhccCCc
Confidence            99988853

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.95  E-value=0.0031  Score=36.21  Aligned_cols=18  Identities=56%  Similarity=0.826  Sum_probs=7.9

Q ss_pred             CCeEeCCCCcccccCcccc
Q 003488          680 LESLDLSSNRLVGQIPTQL  698 (816)
Q Consensus       680 L~~L~Ls~N~l~~~~p~~l  698 (816)
                      |++|||++|+++ .+|++|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.76  E-value=0.0034  Score=36.08  Aligned_cols=19  Identities=53%  Similarity=0.756  Sum_probs=9.7

Q ss_pred             CcEEEccCCcCcccCCcccc
Q 003488          656 LKMLNFSHNHLTGRIPSSLR  675 (816)
Q Consensus       656 L~~L~Ls~N~l~~~ip~~l~  675 (816)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.93  E-value=0.00027  Score=77.39  Aligned_cols=43  Identities=21%  Similarity=0.183  Sum_probs=28.2

Q ss_pred             CCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCccCCCcc
Q 003488           81 MLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIV  123 (816)
Q Consensus        81 L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  123 (816)
                      +.+|.|.+|.+..-....+...+.....|..|++++|.+.+..
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g  131 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEG  131 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHh
Confidence            6677777776666544455555666777777777777776443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.97  E-value=0.0011  Score=72.68  Aligned_cols=190  Identities=26%  Similarity=0.243  Sum_probs=97.5

Q ss_pred             CCEEECCCCCCCccCc----hhhhcCCCCCEEeCCCCCCccccCCcHHHHhhcC-CCCCEEeCCCccCCCccchhhhhcc
Q 003488           57 LTHLNLSNSYFSGQIP----SEISQLSKMLSLDLSKNDEVRIESPVWKGLIENL-TKLKELVLSEVDMSTIVLDYSLTNL  131 (816)
Q Consensus        57 L~~L~Ls~n~~~~~~~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l  131 (816)
                      +..|.|.+|.+.....    ..+.....|+.|++++|.+.......+...+... ..++.|++..|.++......     
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~-----  163 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP-----  163 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH-----
Confidence            7788888888875543    3445678888899998866632222222222222 33445555555554443221     


Q ss_pred             CCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCC----Cchhh----hcCCCCCCEEEccCCcCCCC----CCc
Q 003488          132 SSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSG----HIPSF----LSHLKQLYYLNLEQNNLVGG----IPD  199 (816)
Q Consensus       132 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~----~~~l~~L~~L~L~~n~l~~~----~~~  199 (816)
                                       +...+.....++.++++.|.+..    .++..    +....++++|.+.+|.++..    ...
T Consensus       164 -----------------l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~  226 (478)
T KOG4308|consen  164 -----------------LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDE  226 (478)
T ss_pred             -----------------HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHH
Confidence                             22223333444444444443321    11112    22345566666666655421    112


Q ss_pred             cccCCCC-ccEEEcccCCCCcC----CcccCCCC-CCCcEEECcCCCCCcccchhhh---hCCCCccEEEccCCcCCc
Q 003488          200 SFVNLTQ-LSFLDLSWNQLTGR----LPSCLKGL-RNLVTLRLSGNSLNGTIPSWLF---TVLPYLEVIHLRDNRFTG  268 (816)
Q Consensus       200 ~~~~l~~-L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~  268 (816)
                      .+...+. +..+++..|.+.+.    ..+.+..+ ..+++++++.|.++..-...+.   ..++.++++.+.+|.+..
T Consensus       227 ~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  227 VLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            2334444 55567777666532    22234444 5667777777777644332221   125577777787777653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.63  E-value=0.12  Score=27.46  Aligned_cols=11  Identities=45%  Similarity=0.791  Sum_probs=3.6

Q ss_pred             CcEEEccCCcC
Q 003488          656 LKMLNFSHNHL  666 (816)
Q Consensus       656 L~~L~Ls~N~l  666 (816)
                      |+.|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.92  E-value=0.011  Score=56.07  Aligned_cols=85  Identities=19%  Similarity=0.185  Sum_probs=70.7

Q ss_pred             ccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCcCcCCeE
Q 003488          628 ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKL  707 (816)
Q Consensus       628 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  707 (816)
                      .....+.||+|.|++-. .-..|.-++.|..||++.|++. ..|..++.+..+..+++..|.++ ..|-++.+.+.++++
T Consensus        40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            34556789999999873 4456777888999999999997 78889999999999999888888 568889999999999


Q ss_pred             eCccCccc
Q 003488          708 NLSHNQLE  715 (816)
Q Consensus       708 ~ls~N~l~  715 (816)
                      +.-.|++.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99988763

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.87  E-value=0.23  Score=29.75  Aligned_cols=16  Identities=44%  Similarity=0.530  Sum_probs=7.5

Q ss_pred             CCCCeEeCCCCccccc
Q 003488          678 TVLESLDLSSNRLVGQ  693 (816)
Q Consensus       678 ~~L~~L~Ls~N~l~~~  693 (816)
                      ++|++|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3444555555554433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.87  E-value=0.23  Score=29.75  Aligned_cols=16  Identities=44%  Similarity=0.530  Sum_probs=7.5

Q ss_pred             CCCCeEeCCCCccccc
Q 003488          678 TVLESLDLSSNRLVGQ  693 (816)
Q Consensus       678 ~~L~~L~Ls~N~l~~~  693 (816)
                      ++|++|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3444555555554433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.94  E-value=0.48  Score=28.32  Aligned_cols=17  Identities=35%  Similarity=0.493  Sum_probs=12.1

Q ss_pred             CCCCcEEEccCCcCccc
Q 003488          653 LNLLKMLNFSHNHLTGR  669 (816)
Q Consensus       653 l~~L~~L~Ls~N~l~~~  669 (816)
                      +++|+.|+|++|+|+..
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00370        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            45677888888888743

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.94  E-value=0.48  Score=28.32  Aligned_cols=17  Identities=35%  Similarity=0.493  Sum_probs=12.1

Q ss_pred             CCCCcEEEccCCcCccc
Q 003488          653 LNLLKMLNFSHNHLTGR  669 (816)
Q Consensus       653 l~~L~~L~Ls~N~l~~~  669 (816)
                      +++|+.|+|++|+|+..
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00369        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            45677888888888743

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.53  E-value=0.15  Score=47.72  Aligned_cols=84  Identities=19%  Similarity=0.172  Sum_probs=47.4

Q ss_pred             CCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcc-cchhhhhCCCCccEEEccCCc-CCccCchhhhcCCCCC
Q 003488          204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT-IPSWLFTVLPYLEVIHLRDNR-FTGSIPSTIFELVNLT  281 (816)
Q Consensus       204 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~  281 (816)
                      -..++.+|-++..+..+.-+.+..++.++.|.+.+|.--+. --..+....++|+.|++++|. |++..-..+..+++|+
T Consensus       100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            34566677777766655555566667777777776643211 111122235667777777653 5544445555666666


Q ss_pred             EEEccc
Q 003488          282 SIRLSS  287 (816)
Q Consensus       282 ~L~L~~  287 (816)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            665543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.39  E-value=0.13  Score=48.16  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=42.0

Q ss_pred             CCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCcc-Cchhhh-cCCCCCEEeCCCCCCccccCCcHHHHhhcCCCC
Q 003488           32 LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQ-IPSEIS-QLSKMLSLDLSKNDEVRIESPVWKGLIENLTKL  109 (816)
Q Consensus        32 L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L  109 (816)
                      ++.+|-+++.+..+ --+.+.+++.++.|.+.+|.--+. --..++ -.++|+.|++++|.-  |.+.++ ..+.++++|
T Consensus       103 IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r--IT~~GL-~~L~~lknL  178 (221)
T KOG3864|consen  103 IEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR--ITDGGL-ACLLKLKNL  178 (221)
T ss_pred             EEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe--echhHH-HHHHHhhhh
Confidence            45566666655443 223455666666666666643211 111122 246777777776622  222222 235666777


Q ss_pred             CEEeCCCc
Q 003488          110 KELVLSEV  117 (816)
Q Consensus       110 ~~L~l~~~  117 (816)
                      +.|.+.+-
T Consensus       179 r~L~l~~l  186 (221)
T KOG3864|consen  179 RRLHLYDL  186 (221)
T ss_pred             HHHHhcCc
Confidence            77766654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.67  E-value=0.034  Score=52.80  Aligned_cols=85  Identities=18%  Similarity=0.238  Sum_probs=38.2

Q ss_pred             cccCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhc
Q 003488           26 LFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIEN  105 (816)
Q Consensus        26 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~  105 (816)
                      +..+...+.||++.|++..  +-..|+.++.|..||++.|.+. ..|..++....++++++..|.....+.     .++.
T Consensus        38 i~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~-----s~~k  109 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPK-----SQKK  109 (326)
T ss_pred             hhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCc-----cccc
Confidence            3444455555555554332  2233444444555555554444 344444444445555544443333222     1344


Q ss_pred             CCCCCEEeCCCcc
Q 003488          106 LTKLKELVLSEVD  118 (816)
Q Consensus       106 l~~L~~L~l~~~~  118 (816)
                      .+.++.+++..+.
T Consensus       110 ~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  110 EPHPKKNEQKKTE  122 (326)
T ss_pred             cCCcchhhhccCc
Confidence            4444444444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.91  E-value=0.37  Score=28.17  Aligned_cols=15  Identities=33%  Similarity=0.443  Sum_probs=6.6

Q ss_pred             CCCCEEECCCCCCCc
Q 003488           55 ISLTHLNLSNSYFSG   69 (816)
Q Consensus        55 ~~L~~L~Ls~n~~~~   69 (816)
                      ++|++|+|++|.+++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            445555555555443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	816
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-48
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-15
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-48
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-15
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		3e-07
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-07
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-07
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-06
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-06
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		8e-06
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-05
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		4e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		5e-05
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		7e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		9e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		3e-04
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		3e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		4e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		4e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		5e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		5e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		6e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		6e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		7e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		7e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		8e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		8e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		9e-04
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		9e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		9e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		9e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  189 bits (481), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 201/677 (29%), Positives = 293/677 (43%), Gaps = 123/677 (18%)
Query: 158 QLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQL 217
            LTSL LS N  SG + +  S                        + + L FL++S N L
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTS----------------------LGSCSGLKFLNVSSNTL 138
Query: 218 T--GRLPSCLKGLRNLVTLRLSGNSLNGT-IPSWLFT-VLPYLEVIHLRDNRFTGSIPST 273
              G++   LK L +L  L LS NS++G  +  W+ +     L+ + +  N+ +G +   
Sbjct: 139 DFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--D 195
Query: 274 IFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKL 333
           +   VNL  + +SSNN S  I          LQ+L +S N+LS +    A ST  +L  L
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLL 252
Query: 334 GLSACNI-----------------------SEFPDFLRSQ-DRLEWLQLSENKIYGRIPN 369
            +S+                           E PDFL    D L  L LS N  YG +P 
Sbjct: 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 370 WFW-----------------DIGKDTLYN------LNLSDNFLTDVEQVPLKNLRF---- 402
           +F                  ++  DTL        L+LS N  +      L NL      
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 403 LDLRSNLLQGSVM---VLPPR--LIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSG 457
           LDL SN   G ++      P+  L    + NN  TG+IP +    + +  + LS N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 458 PIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRL 517
            IP  L     L  L L LN   G IPQ       L  LIL+ N   G +P  L+NC+ L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 518 QVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNT--DARVIFPKLRILDLSRN 575
             ++++NNR+    P W+ +L  L +L L +N F G I     D R     L  LDL+ N
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR----SLIWLDLNTN 548
Query: 576 EFTGVLPTRYFQNLKAM----MRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVE-MNILS 630
            F G +P   F+    +    + G     ++   M +           +GI  E +N LS
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 631 I------------------------FLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHL 666
                                     + +D S N   G IP+ +G +  L +LN  HN +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 667 TGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNT 726
           +G IP  + +L  L  LDLSSN+L G+IP  +++L  L++++LS+N L GPIP+  QF T
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
Query: 727 FQSDSYIGNLGLCGFPL 743
           F    ++ N GLCG+PL
Sbjct: 729 FPPAKFLNNPGLCGYPL 745

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 159/382 (41%), Gaps = 92/382 (24%)
Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECL------------VDSITLIW-- 471
           +SN+ + G +    C+A+ +  +DLS NSLSGP+                V S TL +  
Sbjct: 84  LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 472 -------------LDLHLNSFNGS--IPQISANGSG-LVNLILNDNQFEGPLPQS----- 510
                        LDL  NS +G+  +  + ++G G L +L ++ N+  G +  S     
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL 202
Query: 511 ----------------LANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGL 554
                           L +CS LQ L+++ N++   F   ++   EL +L + SN+F G 
Sbjct: 203 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 555 IGNTDARVIFPKLRILDLSRNEFTGVLP-----------------TRYFQNLKAMMRGSN 597
           I      +    L+ L L+ N+FTG +P                   ++  +       +
Sbjct: 263 I----PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 598 TSTVQVQYMHRFGRY--YSAFFTLKGIDV----------EM-----NILSIFLVIDFSSN 640
                    + F           ++G+ V          E+     N+ +  L +D SSN
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 641 RFEGQI-PEVV-GKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQL 698
            F G I P +     N L+ L   +N  TG+IP +L N + L SL LS N L G IP+ L
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 699 TSLNFLSKLNLSHNQLEGPIPQ 720
            SL+ L  L L  N LEG IPQ
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQ 460

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  189 bits (480), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 201/676 (29%), Positives = 293/676 (43%), Gaps = 123/676 (18%)
Query: 159 LTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLT 218
           LTSL LS N  SG + +  S                        + + L FL++S N L 
Sbjct: 99  LTSLDLSRNSLSGPVTTLTS----------------------LGSCSGLKFLNVSSNTLD 136
Query: 219 --GRLPSCLKGLRNLVTLRLSGNSLNGT-IPSWLFT-VLPYLEVIHLRDNRFTGSIPSTI 274
             G++   LK L +L  L LS NS++G  +  W+ +     L+ + +  N+ +G +   +
Sbjct: 137 FPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DV 193
Query: 275 FELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLG 334
              VNL  + +SSNN S  I          LQ+L +S N+LS +    A ST  +L  L 
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLN 250
Query: 335 LSACNI-----------------------SEFPDFLRSQ-DRLEWLQLSENKIYGRIPNW 370
           +S+                           E PDFL    D L  L LS N  YG +P +
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 371 FW-----------------DIGKDTLYN------LNLSDNFLTDVEQVPLKNLRF----L 403
           F                  ++  DTL        L+LS N  +      L NL      L
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 404 DLRSNLLQGSVM---VLPPR--LIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
           DL SN   G ++      P+  L    + NN  TG+IP +    + +  + LS N LSG 
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 459 IPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQ 518
           IP  L     L  L L LN   G IPQ       L  LIL+ N   G +P  L+NC+ L 
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 519 VLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNT--DARVIFPKLRILDLSRNE 576
            ++++NNR+    P W+ +L  L +L L +N F G I     D R     L  LDL+ N 
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR----SLIWLDLNTNL 546
Query: 577 FTGVLPTRYFQNLKAM----MRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVE-MNILSI 631
           F G +P   F+    +    + G     ++   M +           +GI  E +N LS 
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 632 ------------------------FLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT 667
                                    + +D S N   G IP+ +G +  L +LN  HN ++
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 668 GRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTF 727
           G IP  + +L  L  LDLSSN+L G+IP  +++L  L++++LS+N L GPIP+  QF TF
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Query: 728 QSDSYIGNLGLCGFPL 743
               ++ N GLCG+PL
Sbjct: 727 PPAKFLNNPGLCGYPL 742

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 159/382 (41%), Gaps = 92/382 (24%)
Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECL------------VDSITLIW-- 471
           +SN+ + G +    C+A+ +  +DLS NSLSGP+                V S TL +  
Sbjct: 81  LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 472 -------------LDLHLNSFNGS--IPQISANGSG-LVNLILNDNQFEGPLPQS----- 510
                        LDL  NS +G+  +  + ++G G L +L ++ N+  G +  S     
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL 199
Query: 511 ----------------LANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGL 554
                           L +CS LQ L+++ N++   F   ++   EL +L + SN+F G 
Sbjct: 200 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 555 IGNTDARVIFPKLRILDLSRNEFTGVLP-----------------TRYFQNLKAMMRGSN 597
           I      +    L+ L L+ N+FTG +P                   ++  +       +
Sbjct: 260 I----PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 598 TSTVQVQYMHRFGRY--YSAFFTLKGIDV----------EM-----NILSIFLVIDFSSN 640
                    + F           ++G+ V          E+     N+ +  L +D SSN
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 641 RFEGQI-PEVV-GKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQL 698
            F G I P +     N L+ L   +N  TG+IP +L N + L SL LS N L G IP+ L
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 699 TSLNFLSKLNLSHNQLEGPIPQ 720
            SL+ L  L L  N LEG IPQ
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQ 457

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 114/252 (45%), Gaps = 54/252 (21%)
Query: 144 NLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVN 203
           NL+GPIP ++A L QL  L +++ + SG IP FLS                         
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------------------------ 123
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           +  L  LD S+N L+G LP  +  L NLV +   GN ++G IP    +       + +  
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDA 323
           NR TG IP T F  +NL  + LS N L G   + +F   KN Q ++L++N L+ +     
Sbjct: 184 NRLTGKIPPT-FANLNLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFD----- 236
Query: 324 NSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLN 383
                 L K+GLS                L  L L  N+IYG +P     +    L++LN
Sbjct: 237 ------LGKVGLSK--------------NLNGLDLRNNRIYGTLPQGLTQL--KFLHSLN 274
Query: 384 LS-DNFLTDVEQ 394
           +S +N   ++ Q
Sbjct: 275 VSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 102/246 (41%), Gaps = 26/246 (10%)
Query: 501 NQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDA 560
           N   GP+P ++A  ++L  L + +  +    P +L+Q+  L+ L    N   G +  + +
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 561 RVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLK 620
            +  P L  +    N  +G +P  Y    K        +++ +      G+    F  L 
Sbjct: 147 SL--PNLVGITFDGNRISGAIPDSYGSFSKLF------TSMTISRNRLTGKIPPTFANLN 198
Query: 621 GIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT---GRIPSSLRNL 677
                         +D S N  EG    + G     + ++ + N L    G++  S    
Sbjct: 199 -----------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN-- 245
Query: 678 TVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLG 737
             L  LDL +NR+ G +P  LT L FL  LN+S N L G IPQG     F   +Y  N  
Sbjct: 246 --LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 738 LCGFPL 743
           LCG PL
Sbjct: 304 LCGSPL 309

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 142/562 (25%), Positives = 227/562 (40%), Gaps = 91/562 (16%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
           IPD     + ++ L+L+ NQL    P+       L  L    NS++   P  L  +LP L
Sbjct: 19  IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLL 75
Query: 257 EVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
           +V++L+ N  +     T     NLT + L SN++   I+   F   KNL  L LS N LS
Sbjct: 76  KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHK-IKSNPFKNQKNLIKLDLSHNGLS 134
Query: 317 VNTKLDANSTF--------------------------PKLLKLGLSACNISEF-PDFLRS 349
            +TKL                                  L KL LS+  + EF P   ++
Sbjct: 135 -STKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQT 193
Query: 350 QDRLEWLQLSENKIYGRIPNWF-WDIGKDTLYNLNLSDNFLTDVEQVPLKNLRF-----L 403
             +L  L L+  ++   +     W++   ++ NL+L++N L    +     L++     L
Sbjct: 194 IGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQL 253
Query: 404 DLRSNLLQ----GSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL----SNNSL 455
           DL  N L     GS   L P L + S+  N +    P SF   + + ++ L    +  S+
Sbjct: 254 DLSYNNLHDVGNGSFSYL-PSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV 312
Query: 456 S-GPIPECLVDSITLIWLDL--HLNSFNGSIPQISANG-SGLVNLILNDNQFEGPLPQSL 511
           S    P   +D  +  WL    +LN  + +IP   +N  +GLV               SL
Sbjct: 313 SLASHPN--IDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLV---------------SL 355
Query: 512 ANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILD 571
              S  +         ++TF   LA  P LL L L  N    +   T + +   +LRILD
Sbjct: 356 KYLSLSKTFTSLQTLTNETFVS-LAHSP-LLTLNLTKNHISKIANGTFSWL--GQLRILD 411
Query: 572 LSRNEFTGVLPTRYFQNLKAMM-------RGSNTSTVQVQYMHRFGRYYSAFFTLKGIDV 624
           L  NE    L  + ++ L+ +        +    ST     +    R       LK +D+
Sbjct: 412 LGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDI 471
Query: 625 E---MNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT--------GRIPSS 673
                  L    ++D S+N       +++  L  L++L+F HN+L         G   + 
Sbjct: 472 SPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNF 531
Query: 674 LRNLTVLESLDLSSNRLVGQIP 695
           L+ L+ L  L+L SN L  +IP
Sbjct: 532 LKGLSHLHILNLESNGL-DEIP 552

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
           +F  LT+L++L+L +NQL          L  L TL L+ N L  ++P  +F  L  L+ +
Sbjct: 54  TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 260 HLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           +L  N+   S+PS +F+ L  L  +RL++N L   I    F +L NLQ L LS N+L
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
           +F  LT+L++L+L +NQL          L  L TL L+ N L  ++P  +F  L  L+ +
Sbjct: 54  TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 260 HLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           +L  N+   S+PS +F+ L  L  +RL++N L   I    F +L NLQ L LS N+L
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
Query: 200 SFVNLTQLSFLDLSWN-QLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
           +F  L  L  LDLS N QL    P+   GL  L TL L    L    P  LF  L  L+ 
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQY 133
Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           ++L+DN        T  +L NLT + L  N +S   E   F  L +L  L L QNR++ +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVA-H 191
Query: 319 TKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRI---PNWFW 372
               A     +L+ L L A N+S  P + L     L++L+L++N         P W W
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
Query: 200 SFVNLTQLSFLDLSWN-QLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
           +F  L  L  LDLS N QL    P+   GL  L TL L    L    P  LF  L  L+ 
Sbjct: 74  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQY 132
Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           ++L+DN        T  +L NLT + L  N +S   E   F  L +L  L L QNR++ +
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVA-H 190
Query: 319 TKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRI---PNWFW 372
               A     +L+ L L A N+S  P + L     L++L+L++N         P W W
Sbjct: 191 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 248

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 114/282 (40%), Gaps = 29/282 (10%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
           ++F  L  L  L+LS+N L     S   GL  +  + L  N +   I    F  L  L+ 
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQT 366
Query: 259 IHLRDN-----RFTGSIPSTIFE--------LVNLTS--IRLSSNNLSGHIELCMFARLK 303
           + LRDN      F  SIP              +NLT+  I LS N L     L    R+ 
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426
Query: 304 NLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLS------ACNISEFPDFLRSQDRLEWLQ 357
           +LQ L L+QNR S  +     S  P L +L L       A       D       L+ L 
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486
Query: 358 LSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPL-KNLRFLDLRSNLLQGSVMV 416
           L+ N +    P  F  +    L  L+L+ N LT +    L  NL  LD+  N L      
Sbjct: 487 LNHNYLNSLPPGVFSHLT--ALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPD 544
Query: 417 LPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
           +   L    I++NK   E  C   T   I +++ +N +++GP
Sbjct: 545 VFVSLSVLDITHNKFICE--CELSTF--INWLNHTNVTIAGP 582

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 200 SFVNLTQLSFLDLSWN-QLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
           +F  LT L  LDLS N QL    P+  +GL +L TL L    L    P  LF  L  L+ 
Sbjct: 74  AFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPG-LFRGLAALQY 132
Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           ++L+DN       +T  +L NLT + L  N +    E   F  L +L  L L QN ++  
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEH-AFRGLHSLDRLLLHQNHVA-R 190
Query: 319 TKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRI---PNWFW 372
               A     +L+ L L A N+S  P + L     L++L+L++N         P W W
Sbjct: 191 VHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAW 248

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 24/271 (8%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
           D F +   L  L+L+ N ++   P     L NL TL L  N L   IP  +FT L  L  
Sbjct: 50  DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTK 108
Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           + + +N+    +     +L NL S+ +  N+L  +I    F+ L +L+ L L +  L+ +
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-S 166
Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFW--DIGK 376
              +A S    L+ L L   NI+   D+  S  RL  L++ E      I +W +   +  
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLE------ISHWPYLDTMTP 218
Query: 377 DTLYNLNLSDNFLT--DVEQVP------LKNLRFLDLRSN---LLQGSVMVLPPRLIFFS 425
           + LY LNL+   +T  ++  VP      L  LRFL+L  N    ++GS++    RL    
Sbjct: 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278
Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS 456
           +   +L    P +F     +  +++S N L+
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
           F  L  L  L+L  NQLTG  P+  +G  ++  L+L  N +   I + +F  L  L+ ++
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN 108
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFAR 301
           L DN+ +  +P +   L +LTS+ L+SN  + +  L  FA 
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 165/370 (44%), Gaps = 43/370 (11%)
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
           NLTQ++F   S NQLT   P  LK L  LV + ++ N +    P      L  L  + L 
Sbjct: 64  NLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 115
Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
           +N+ T   P  +  L NL  + LSSN +S   ++   + L +LQ L  S N++   T L 
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFSSNQV---TDLK 167
Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
             +    L +L +S+  +S+    L     LE L  + N+I    P     +G  T L  
Sbjct: 168 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-----LGILTNLDE 221
Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPP-----RLIFFSISNNKLTGEI 435
           L+L+ N L D+  +  L NL  LDL +N +      L P     +L    +  N+++   
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISNIS 277
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
           P +  TA  +  ++L+ N L    P   + ++T  +L L+ N+ +   P  S   + L  
Sbjct: 278 PLAGLTA--LTNLELNENQLEDISPISNLKNLT--YLTLYFNNISDISPVSSL--TKLQR 331
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
           L  ++N+       SLAN + +  L+  +N+I D  P  LA L  +  L L    +    
Sbjct: 332 LFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 387
Query: 556 GNTDARVIFP 565
            N  A V  P
Sbjct: 388 VNYKANVSIP 397

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 185/450 (41%), Gaps = 81/450 (18%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSC-LKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
           +PD     T ++ L+L+ NQL  RLP+        L +L +  N+++   P  L   LP 
Sbjct: 24  VPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPM 79
Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           L+V++L+ N  +     T     NLT + L SN++   I+   F + KNL  L LS N L
Sbjct: 80  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL 138
Query: 316 SVNTKLDANSTFPKLLKLGLSACNI----SEFPDFLRSQDRLEWLQLSENKIYGRIPNWF 371
           S +TKL        L +L LS   I    SE  D   +   L+ L+LS N+I    P  F
Sbjct: 139 S-STKLGTQVQLENLQELLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQIKEFSPGCF 196
Query: 372 WDIGK-------------------------DTLYNLNLSDNFLTDVEQVPL-----KNLR 401
             IG+                          ++ NL+LS++ L+             NL 
Sbjct: 197 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 256
Query: 402 FLDLRS---NLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL----SNNS 454
            LDL     N++        P+L +F +  N +      S      + +++L    +  S
Sbjct: 257 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 316
Query: 455 LS-GPIPECLVDSITLIWLDL--HLNSFNGSIPQISANG-SGLVNL-------------I 497
           +S   +P+  +D  +  WL    HLN  +  IP I +N  +GL+NL              
Sbjct: 317 ISLASLPK--IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 374
Query: 498 LNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGN 557
           L +  F      SLA+ S L +LN+  N+I        + L  L VL L  N+    +  
Sbjct: 375 LTNETF-----VSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 428
Query: 558 TDAR-------VIFPKLRILDLSRNEFTGV 580
            + R       +     + L L+RN F  V
Sbjct: 429 QEWRGLENIFEIYLSYNKYLQLTRNSFALV 458

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 185/450 (41%), Gaps = 81/450 (18%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSC-LKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
           +PD     T ++ L+L+ NQL  RLP+        L +L +  N+++   P  L   LP 
Sbjct: 29  VPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPM 84
Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           L+V++L+ N  +     T     NLT + L SN++   I+   F + KNL  L LS N L
Sbjct: 85  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL 143
Query: 316 SVNTKLDANSTFPKLLKLGLSACNI----SEFPDFLRSQDRLEWLQLSENKIYGRIPNWF 371
           S +TKL        L +L LS   I    SE  D   +   L+ L+LS N+I    P  F
Sbjct: 144 S-STKLGTQVQLENLQELLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQIKEFSPGCF 201
Query: 372 WDIGK-------------------------DTLYNLNLSDNFLTDVEQVPL-----KNLR 401
             IG+                          ++ NL+LS++ L+             NL 
Sbjct: 202 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 261
Query: 402 FLDLRS---NLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL----SNNS 454
            LDL     N++        P+L +F +  N +      S      + +++L    +  S
Sbjct: 262 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 321
Query: 455 LS-GPIPECLVDSITLIWLDL--HLNSFNGSIPQISANG-SGLVNL-------------I 497
           +S   +P+  +D  +  WL    HLN  +  IP I +N  +GL+NL              
Sbjct: 322 ISLASLPK--IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 379
Query: 498 LNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGN 557
           L +  F      SLA+ S L +LN+  N+I        + L  L VL L  N+    +  
Sbjct: 380 LTNETF-----VSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 433
Query: 558 TDAR-------VIFPKLRILDLSRNEFTGV 580
            + R       +     + L L+RN F  V
Sbjct: 434 QEWRGLENIFEIYLSYNKYLQLTRNSFALV 463

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 171/408 (41%), Gaps = 79/408 (19%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSC-LKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
           +PD     T ++ L+L+ NQL  RLP+        L +L +  N+++   P  L   LP 
Sbjct: 19  VPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPM 74
Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           L+V++L+ N  +     T     NLT + L SN++   I+   F + KNL  L LS N L
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL 133
Query: 316 SVNTKLDANSTFPKLLKLGLSACNI----SEFPDFLRSQDRLEWLQLSENKIYGRIPNWF 371
           S +TKL        L +L LS   I    SE  D   +   L+ L+LS N+I    P  F
Sbjct: 134 S-STKLGTQVQLENLQELLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQIKEFSPGCF 191
Query: 372 WDIGK-------------------------DTLYNLNLSDNFLTDVEQVPL-----KNLR 401
             IG+                          ++ NL+LS++ L+             NL 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251
Query: 402 FLDLRS---NLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL----SNNS 454
            LDL     N++        P+L +F +  N +      S      + +++L    +  S
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311
Query: 455 LS-GPIPECLVDSITLIWLDL--HLNSFNGSIPQISANG-SGLVNL-------------I 497
           +S   +P+  +D  +  WL    HLN  +  IP I +N  +GL+NL              
Sbjct: 312 ISLASLPK--IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Query: 498 LNDNQFEGPLPQSLANCSRLQVLNVANNRI----DDTFPHWLAQLPEL 541
           L +  F      SLA+ S L +LN+  N+I     D F  WL  L  L
Sbjct: 370 LTNETF-----VSLAH-SPLHILNLTKNKISKIESDAFS-WLGHLEVL 410

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 164/370 (44%), Gaps = 43/370 (11%)
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
           NLTQ++F   S NQLT   P  LK L  LV + ++ N +    P      L  L  + L 
Sbjct: 64  NLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 115
Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
           +N+ T   P  +  L NL  + LSSN +S   ++   + L +LQ L  S N++   T L 
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFSSNQV---TDLK 167
Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
             +    L +L +S+  +S+    L     LE L  + N+I    P     +G  T L  
Sbjct: 168 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-----LGILTNLDE 221
Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPP-----RLIFFSISNNKLTGEI 435
           L+L+ N L D+  +  L NL  LDL +N +      L P     +L    +  N+++   
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISNIS 277
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
           P +  TA  +  ++L+ N L    P   + ++T  +L L+ N+ +   P  S   + L  
Sbjct: 278 PLAGLTA--LTNLELNENQLEDISPISNLKNLT--YLTLYFNNISDISPVSSL--TKLQR 331
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
           L   +N+       SLAN + +  L+  +N+I D  P  LA L  +  L L    +    
Sbjct: 332 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 387
Query: 556 GNTDARVIFP 565
            N  A V  P
Sbjct: 388 VNYKANVSIP 397

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 164/370 (44%), Gaps = 43/370 (11%)
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
           NLTQ++F   S NQLT   P  LK L  LV + ++ N +    P      L  L  + L 
Sbjct: 64  NLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 115
Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
           +N+ T   P  +  L NL  + LSSN +S   ++   + L +LQ L  S N++   T L 
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLNFSSNQV---TDLK 167
Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
             +    L +L +S+  +S+    L     LE L  + N+I    P     +G  T L  
Sbjct: 168 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-----LGILTNLDE 221
Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPP-----RLIFFSISNNKLTGEI 435
           L+L+ N L D+  +  L NL  LDL +N +      L P     +L    +  N+++   
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISNIS 277
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
           P +  TA  +  ++L+ N L    P   + ++T  +L L+ N+ +   P  S   + L  
Sbjct: 278 PLAGLTA--LTNLELNENQLEDISPISNLKNLT--YLTLYFNNISDISPVSSL--TKLQR 331
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
           L   +N+       SLAN + +  L+  +N+I D  P  LA L  +  L L    +    
Sbjct: 332 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 387
Query: 556 GNTDARVIFP 565
            N  A V  P
Sbjct: 388 VNYKANVSIP 397

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 12/215 (5%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
           +SF +L  L  L LS N +         GL NL TL L  N L  TIP+  F  L  L+ 
Sbjct: 82  NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKE 140
Query: 259 IHLRDNRFTGSIPSTIFELV-NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV 317
           + LR+N    SIPS  F  + +L  + L       +I    F  L NL+YL L+   L  
Sbjct: 141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199
Query: 318 NTKLDANSTFPKLLKLGLSACNISEF-PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK 376
              L   +   KL +L LS  ++S   P   +    L+ L + +++I     N F ++  
Sbjct: 200 IPNL---TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL-- 254
Query: 377 DTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSN 408
            +L  +NL+ N LT +      PL +L  + L  N
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 8/79 (10%)
Query: 378 TLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPC 437
           +L  LN+ DN+LTD+ ++P ++L FLD+  N+  G +  LPP L + + S+N++      
Sbjct: 258 SLEALNVRDNYLTDLPELP-QSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIR----- 310
Query: 438 SFCTAAP-IEFIDLSNNSL 455
           S C   P +E +++SNN L
Sbjct: 311 SLCDLPPSLEELNVSNNKL 329

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           L  L+ LD+S+N+LT      L+GL  L  L L GN L  T+P  L T  P LE + L +
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
           N+ T  +P+ +   L NL ++ L  N+L
Sbjct: 158 NQLT-ELPAGLLNGLENLDTLLLQENSL 184

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           L  L+ LD+S+N+LT      L+GL  L  L L GN L  T+P  L T  P LE + L +
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNL 290
           N+ T      +  L NL ++ L  N+L
Sbjct: 158 NQLTELPAGLLNGLENLDTLLLQENSL 184

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           L  L+ LD+S+N+LT      L+GL  L  L L GN L  T+P  L T  P LE + L +
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNL 290
           N+ T      +  L NL ++ L  N+L
Sbjct: 158 NQLTELPAGLLNGLENLDTLLLQENSL 184

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
           +  +LT L+ LDL+ NQ++   P  L GL  L  L+L  N ++   P    T L  LE  
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE-- 288
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
            L +N+     P  I  L NLT + L  NN+S   ++   + L  LQ L+ S N++S
Sbjct: 289 -LNENQLEDISP--ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFSNNKVS 339

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           L  L+ LD+S+N+LT      L+GL  L  L L GN L  T+P  L T  P LE + L +
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNL 290
           N+ T      +  L NL ++ L  N+L
Sbjct: 158 NQLTELPAGLLNGLENLDTLLLQENSL 184

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           L  L+ LD+S+N+LT      L+GL  L  L L GN L  T+P  L T  P LE + L +
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
           N  T  +P+ +   L NL ++ L  N+L
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSL 184

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           L  L+ LD+S+N+LT      L+GL  L  L L GN L  T+P  L T  P LE + L +
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
           N  T  +P+ +   L NL ++ L  N+L
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSL 184

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           L  L+ LD+S+N+LT      L+GL  L  L L GN L  T+P  L T  P LE + L +
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
           N  T  +P+ +   L NL ++ L  N+L
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSL 184

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           L  L+ LD+S+N+LT      L+GL  L  L L GN L  T+P  L T  P LE + L +
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
           N  T  +P+ +   L NL ++ L  N+L
Sbjct: 158 NDLT-ELPAGLLNGLENLDTLLLQENSL 184

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           L  L+ LD+S+N+LT      L+GL  L  L L GN L  T+P  L T  P LE + L +
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 158
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNL 290
           N  T      +  L NL ++ L  N+L
Sbjct: 159 NNLTELPAGLLNGLENLDTLLLQENSL 185

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
           L  L+ LD+S+N+LT      L+GL  L  L L GN L  T+P  L T  P LE + L +
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNL 290
           N  T      +  L NL ++ L  N+L
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSL 184

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
           FP+L++LDLSR E   +    Y    +L  ++   N     +Q +   G +       K 
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 105
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
           + VE N+ S+               P  +G L  LK LN +HN +   ++P    NLT L
Sbjct: 106 VAVETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
           E LDLSSN++     T L  L+
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLH 173

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
           FP+L++LDLSR E   +    Y    +L  ++   N     +Q +   G +       K 
Sbjct: 53  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 107
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
           + VE N+ S+               P  +G L  LK LN +HN +   ++P    NLT L
Sbjct: 108 VAVETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
           E LDLSSN++     T L  L+
Sbjct: 154 EHLDLSSNKIQSIYCTDLRVLH 175

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
           FP+L++LDLSR E   +    Y    +L  ++   N     +Q +   G +       K 
Sbjct: 52  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 106
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
           + VE N+ S+               P  +G L  LK LN +HN +   ++P    NLT L
Sbjct: 107 VAVETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 152
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
           E LDLSSN++     T L  L+
Sbjct: 153 EHLDLSSNKIQSIYCTDLRVLH 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	816
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-102
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-83
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-78
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-38
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-71
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-64
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-40
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-40
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-33
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-32
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-32
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-31
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-24
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  569 bits (1470), Expect = 0.0
 Identities = 217/790 (27%), Positives = 326/790 (41%), Gaps = 120/790 (15%)

Query: 3   TGQVIGLDLSCSWLHGSIPS-NSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
             +V  +DLS   L+    + +SSL  L  LE+L L ++  N S+  SGF    SLT L+
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--SGFKCSASLTSLD 106

Query: 62  LSNSYFSGQIPS--EISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDM 119
           LS +  SG + +   +   S +  L++S N    ++ P        L  L+ L LS   +
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT---LDFPGKVSGGLKLNSLEVLDLSANSI 163

Query: 120 S-TIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLS 178
           S   V+ + L++    L +L ++G  + G +   ++    L  L +S N+FS  IP  L 
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LG 220

Query: 179 HLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSG 238
               L +L++  N L G    +    T+L  L++S NQ  G +P     L++L  L L+ 
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAE 278

Query: 239 NSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCM 298
           N   G IP +L      L  + L  N F G++P        L S+ LSSNN SG + +  
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

Query: 299 FARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQL 358
             +++ L+ L LS N  S                                          
Sbjct: 339 LLKMRGLKVLDLSFNEFS------------------------------------------ 356

Query: 359 SENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSV---- 414
                 G +P              NLS             +L  LDL SN   G +    
Sbjct: 357 ------GELPESLT----------NLS------------ASLLTLDLSSNNFSGPILPNL 388

Query: 415 -MVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLD 473
                  L    + NN  TG+IP +    + +  + LS N LSG IP  L     L  L 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 474 LHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPH 533
           L LN   G IPQ       L  LIL+ N   G +P  L+NC+ L  ++++NNR+    P 
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

Query: 534 WLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMM 593
           W+ +L  L +L L +N F G I           L  LDL+ N F G +P   F+    + 
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566

Query: 594 RGSNTSTVQVQ---------------YMHRFGRYYSAFFTLKG--------------IDV 624
                    V                 +   G        L                   
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 625 EMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLD 684
             +     + +D S N   G IP+ +G +  L +LN  HN ++G IP  + +L  L  LD
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 685 LSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLS 744
           LSSN+L G+IP  +++L  L++++LS+N L GPIP+  QF TF    ++ N GLCG+PL 
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746

Query: 745 DKCSNIDDAQ 754
               +  D  
Sbjct: 747 RCDPSNADGY 756

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  289 bits (743), Expect = 2e-86
 Identities = 138/535 (25%), Positives = 215/535 (40%), Gaps = 91/535 (17%)

Query: 203 NLTQLSFLDLSWNQLT---GRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
              +++ +DLS   L      + S L  L  L +L LS + +NG++    F     L  +
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSL 105

Query: 260 HLRDNRFTGSIPS--TIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS- 316
            L  N  +G + +  ++     L  + +SSN L    ++    +L +L+ L LS N +S 
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 317 -VNTKLDANSTFPKLLKLGLSACNIS-EFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDI 374
                   +    +L  L +S   IS +    +     LE+L +S N     IP     +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP----FL 219

Query: 375 GKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPP------RLIFFSISN 428
           G                        L+ LD+  N L G              L   +IS+
Sbjct: 220 GD--------------------CSALQHLDISGNKLSGD---FSRAISTCTELKLLNISS 256

Query: 429 NKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT-LIWLDLHLNSFNGSIPQIS 487
           N+  G IP     +  ++++ L+ N  +G IP+ L  +   L  LDL  N F G++P   
Sbjct: 257 NQFVGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 488 ANGSGLVNLILNDNQFEGPLP-QSLANCSRLQVLNVANNRIDDTFPHWLAQL-PELLVLI 545
            + S L +L L+ N F G LP  +L     L+VL+++ N      P  L  L   LL L 
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 546 LRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQY 605
           L SN F G I     +     L+ L L  N FTG +P     N   ++            
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELV------------ 421

Query: 606 MHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNH 665
                                        +  S N   G IP  +G L+ L+ L    N 
Sbjct: 422 ----------------------------SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 666 LTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ 720
           L G IP  L  +  LE+L L  N L G+IP+ L++   L+ ++LS+N+L G IP+
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  331 bits (850), Expect = e-102
 Identities = 136/648 (20%), Positives = 235/648 (36%), Gaps = 46/648 (7%)

Query: 130 NLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLE 189
           +L ++++ L+LT   L     A+     QLTSL + +N  S   P     L  L  LNL+
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 190 QNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWL 249
            N L      +F   T L+ L L  N +     +     +NL+TL LS N L+ T     
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 250 FTVLPYLEVIHLRDNRFTGSIPSTI--FELVNLTSIRLSSNNLSGHIELCMFARLKNLQY 307
              L  L+ + L +N+        +  F   +L  + LSSN +      C F  +  L  
Sbjct: 142 VQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFG 199

Query: 308 LYLSQNRLS--VNTKLDANSTFPKLLKLGLSACNISEFPD---FLRSQDRLEWLQLSENK 362
           L+L+  +L   +  KL        +  L LS   +S   +          L  L LS N 
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 363 IYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV---PLKNLRFLDLRSNLLQGSVMVLP- 418
           +     + F  + +  L    L  N +  +       L N+R+L+L+ +  + S+ +   
Sbjct: 260 LNVVGNDSFAWLPQ--LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 419 -----------PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLV--- 464
                        L   ++ +N + G     F     ++++ LSN+  S           
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 465 -DSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLP-QSLANCSRLQVLNV 522
                L  L+L  N  +       +    L  L L  N+    L  Q       +  + +
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437

Query: 523 ANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLP 582
           + N+      +  A +P L  L+LR      +  +         L ILDLS N     + 
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-IN 496

Query: 583 TRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRF 642
               + L+ +    +     +  + +        + LKG       LS   +++  SN F
Sbjct: 497 DDMLEGLEKLEI-LDLQHNNLARLWKHANPGGPIYFLKG-------LSHLHILNLESNGF 548

Query: 643 EGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQL-TSL 701
           +    EV   L  LK+++   N+L     S   N   L+SL+L  N +          + 
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 702 NFLSKLNLSHNQLEGPIPQGPQF-----NTFQSDSYIGNLGLCGFPLS 744
             L++L++  N  +        F      T  +   + +  LC  P  
Sbjct: 609 RNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  256 bits (657), Expect = 5e-75
 Identities = 117/575 (20%), Positives = 194/575 (33%), Gaps = 79/575 (13%)

Query: 158 QLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQL 217
                  S+   +       +++     LNL  N L      +F   +QL+ LD+ +N +
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 218 TGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFEL 277
           +   P   + L  L  L L  N L+       F     L  +HL  N       +   + 
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDK-TFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 278 VNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS-VNTKLDANSTFPKLLKLGLS 336
            NL ++ LS N LS   +L    +L+NLQ L LS N++  + ++         L KL LS
Sbjct: 121 KNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 337 ACNISEF-PDFLRSQDRLEWLQLSENKIYGRIPNW-FWDIGKDTLYNLNLSDNFLTDV-- 392
           +  I EF P    +  RL  L L+  ++   +      ++   ++ NL+LS++ L+    
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 393 ---EQVPLKNLRFLDLRSNLLQG---SVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIE 446
                +   NL  LDL  N L           P+L +F +  N +      S      + 
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

Query: 447 FIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGP 506
           +++L  +                    + L S              L +L + DN   G 
Sbjct: 300 YLNLKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLA----QLPELLVLILRSNKFYGLIGNTDARV 562
                     L+ L+++N+                   L +L L  NK   +  +  +  
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW- 403

Query: 563 IFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGI 622
               L +LDL  NE    L  + ++ L+ +                              
Sbjct: 404 -LGHLEVLDLGLNEIGQELTGQEWRGLENIF----------------------------- 433

Query: 623 DVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG--RIPSSLRNLTVL 680
                       I  S N++          +  L+ L      L      PS  + L  L
Sbjct: 434 -----------EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 681 ESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
             LDLS+N +       L  L  L  L+L HN L 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  231 bits (591), Expect = 7e-66
 Identities = 110/510 (21%), Positives = 183/510 (35%), Gaps = 61/510 (11%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           L LS + +         +F    L+ L L SN          F  +  L  L L+N    
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSL 128
             +  ++                               T ++ L LS   +ST   + + 
Sbjct: 209 PSLTEKLCLEL-------------------------ANTSIRNLSLSNSQLSTT-SNTTF 242

Query: 129 TNLS-SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187
             L  ++L+ L L+  NL      S A LPQL    L YN+        L  L  + YLN
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 188 LEQN---------NLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSG 238
           L+++         +L      SF  L  L  L++  N + G   +   GL NL  L LS 
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 239 NSLN-GTIPSWLFTVLP--YLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIE 295
           +  +  T+ +  F  L    L +++L  N+ +         L +L  + L  N +   + 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 296 LCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEF---PDFLRSQDR 352
              +  L+N+  +YLS N+    T+ ++ +  P L +L L    +      P   +    
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 353 LEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP-----------LKNLR 401
           L  L LS N I     +    + K  L  L+L  N L  + +             L +L 
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEK--LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 402 FLDLRSNLLQG-SVMVLP--PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
            L+L SN      V V      L    +  N L       F     ++ ++L  N ++  
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599

Query: 459 IPECLVDSIT-LIWLDLHLNSFNGSIPQIS 487
             +    +   L  LD+  N F+ +   I+
Sbjct: 600 EKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (569), Expect = 1e-62
 Identities = 107/544 (19%), Positives = 179/544 (32%), Gaps = 77/544 (14%)

Query: 205 TQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN 264
                 D S  +LT ++P  L    N+  L L+ N L   +P+  FT    L  + +  N
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59

Query: 265 RFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDAN 324
             +   P    +L  L  + L  N LS   +   FA   NL  L+L  N +    K+  N
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDK-TFAFCTNLTELHLMSNSI---QKIKNN 115

Query: 325 S--TFPKLLKLGLSACNISEF-PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYN 381
                  L+ L LS   +S          + L+ L LS NKI              +L  
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 382 LNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQGSVMVLP------PRLIFFSISNNKLT 432
           L LS N + +        +  L  L L +  L  S+            +   S+SN++L+
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 433 GEIPCSF--CTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANG 490
                +F       +  +DLS N+L+    +       L +  L  N+            
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 491 SGLVNLILNDNQFEGPL---------PQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL 541
             +  L L  +  +  +           S      L+ LN+ +N I     +    L  L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 542 LVLILRSN--KFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTS 599
             L L ++      L   T   +    L IL+L++N+ + +     F  L  +       
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-DAFSWLGHL------- 407

Query: 600 TVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIP-EVVGKLNLLKM 658
                                             V+D   N    ++  +    L  +  
Sbjct: 408 ---------------------------------EVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 659 LNFSHNHLTGRIPSSLRNLTVLESLDLSSNRL--VGQIPTQLTSLNFLSKLNLSHNQLEG 716
           +  S+N       +S   +  L+ L L    L  V   P+    L  L+ L+LS+N +  
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 717 PIPQ 720
               
Sbjct: 495 INDD 498

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  277 bits (711), Expect = 2e-83
 Identities = 128/592 (21%), Positives = 196/592 (33%), Gaps = 68/592 (11%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
            IP N    L    + L+L  N     L S  F     L  L+LS              L
Sbjct: 21  KIPDN----LPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
           S + +L L+ N                +  L     S               L SSL  L
Sbjct: 76  SHLSTLILTGN---------------PIQSLALGAFS--------------GL-SSLQKL 105

Query: 139 HLTGCNLIGPIPASLANLPQLTSLSLSYNHF-SGHIPSFLSHLKQLYYLNLEQNNLVGGI 197
                NL       + +L  L  L++++N   S  +P + S+L  L +L+L  N +    
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 198 PDSFVNLTQLSF----LDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVL 253
                 L Q+      LDLS N +    P   K +  L  L L  N  +  +       L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 254 PYLEVIHLRDNRFTGS------IPSTIFELVNLT--SIRLSSNNLSGHIELCMFARLKNL 305
             LEV  L    F           S +  L NLT    RL+  +      + +F  L N+
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 306 QYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYG 365
               L    +    ++   S       L L  C   +FP        L+ L  + NK   
Sbjct: 285 SSFSLVSVTIE---RVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGN 339

Query: 366 RIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP-----LKNLRFLDLRSNLLQGSVMVL--P 418
                   +   +L  L+LS N L+             +L++LDL  N +          
Sbjct: 340 AFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 419 PRLIFFSISNNKLTGEIPCS-FCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLN 477
            +L      ++ L      S F +   + ++D+S+               +L  L +  N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 478 SFNGSI-PQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLA 536
           SF  +  P I      L  L L+  Q E   P +  + S LQVLN+++N           
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 537 QLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQN 588
            L  L VL    N           +     L  L+L++N+F      + F  
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  264 bits (677), Expect = 1e-78
 Identities = 111/603 (18%), Positives = 182/603 (30%), Gaps = 80/603 (13%)

Query: 130 NLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLE 189
           NL  S   L L+   L      S  + P+L  L LS              L  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 190 QNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWL 249
            N +      +F  L+ L  L      L       +  L+ L  L ++ N +        
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 250 FTVLPYLEVIHLRDNRFTGSIPSTIFELVNLT----SIRLSSNNLSGHIELCMFARLKNL 305
           F+ L  LE + L  N+      + +  L  +     S+ LS N ++  I+   F  +  L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RL 202

Query: 306 QYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQ----DRLEWLQLSEN 361
             L L  N  S+N           L    L         +  +      + L  L + E 
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 362 KIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSV-MVLPPR 420
           +                L  L+   + + D+    L N+    L S  ++          
Sbjct: 263 R----------------LAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 421 LIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLN--S 478
                + N K          +        L+  S  G      VD  +L +LDL  N  S
Sbjct: 306 WQHLELVNCKFGQFPTLKLKS-----LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 479 FNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHW-LAQ 537
           F G   Q     + L  L L+ N     +  +     +L+ L+  ++ +           
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 538 LPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSN 597
           L  L+ L +                    L +L ++ N F        F  L+ +     
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNSFQENFLPDIFTELRNL----- 472

Query: 598 TSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLK 657
                                                +D S  + E   P     L+ L+
Sbjct: 473 -----------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 658 MLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSL-NFLSKLNLSHNQLEG 716
           +LN SHN+         + L  L+ LD S N ++     +L    + L+ LNL+ N    
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

Query: 717 PIP 719
              
Sbjct: 558 TCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  197 bits (504), Expect = 2e-54
 Identities = 95/525 (18%), Positives = 168/525 (32%), Gaps = 54/525 (10%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           L    + L         +  L  L+ LN+  N   S  +   F  L +L HL+LS++   
Sbjct: 105 LVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 69  GQIPSEISQLSKM----LSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVL 124
               +++  L +M    LSLDLS N    I+   +K +     +L +L L     S  V+
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLHKLTLRNNFDSLNVM 217

Query: 125 DYSLTNLSS----SLSYLHLTGCNLI-GPIPASLANLPQLTSLSLSYNH---FSGHIPSF 176
              +  L+      L          +     ++L  L  LT       +   +   I   
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 177 LSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRL 236
            + L  +   +L    +       F        L+L   +        LK L+ L     
Sbjct: 278 FNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 237 SGNSLNGTIPSWLFTVLPYLEVIHLRDNR--FTGSIPSTIFELVNLTSIRLSSNNLSGHI 294
            G +            LP LE + L  N   F G    + F   +L  + LS N +    
Sbjct: 336 KGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 295 ELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEF-PDFLRSQDRL 353
               F  L+ L++L    + L   ++     +   L+ L +S  +              L
Sbjct: 390 SN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 354 EWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGS 413
           E L+++ N          +   +  L  L+LS   L  +      +L             
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSL------------- 493

Query: 414 VMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT-LIWL 472
                  L   ++S+N         +     ++ +D S N +     + L    + L +L
Sbjct: 494 -----SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 473 DLHLNSFNGSIPQIS--ANGSGLVNLILNDNQFEGPLPQSLANCS 515
           +L  N F  +    S          L++   + E   P       
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  172 bits (437), Expect = 1e-45
 Identities = 81/411 (19%), Positives = 141/411 (34%), Gaps = 49/411 (11%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSS-----LISSGFGRLISLTHLNLS 63
           L L  ++   ++     +  L  LE   L   +F +         S    L +LT     
Sbjct: 205 LTLRNNFDSLNVMKTC-IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 64  NSY---FSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMS 120
            +Y   +   I    + L+ + S  L      R++              + L L      
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD------FSYNFGWQHLELVNCKFG 317

Query: 121 TIVLDYSLTNLS-----------------SSLSYLHLTGCNL--IGPIPASLANLPQLTS 161
                   +                     SL +L L+   L   G    S      L  
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 162 LSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDS-FVNLTQLSFLDLSWNQLTGR 220
           L LS+N       +FL  L+QL +L+ + +NL      S F++L  L +LD+S       
Sbjct: 378 LDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 221 LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNL 280
                 GL +L  L+++GNS        +FT L  L  + L   +     P+    L +L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 281 TSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSA--- 337
             + +S NN         +  L +LQ L  S N +  + K +       L  L L+    
Sbjct: 497 QVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

Query: 338 ---CNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLS 385
              C    F  +++ Q +   L +   ++    P+    +    + +LN++
Sbjct: 556 ACTCEHQSFLQWIKDQRQ---LLVEVERMECATPSDKQGM---PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (381), Expect = 3e-38
 Identities = 87/522 (16%), Positives = 140/522 (26%), Gaps = 141/522 (27%)

Query: 207 LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
              LDLS+N L             L  L LS   +        +  L +L  + L  N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPI 88

Query: 267 TGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANST 326
                     L +L  +     NL+          LK L+ L ++ N +           
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQS--------- 138

Query: 327 FPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD 386
                          + P++  +   LE L LS NKI                       
Sbjct: 139 --------------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL--------------- 169

Query: 387 NFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIE 446
                     L  +  L+L  +L                 S N +    P +F     + 
Sbjct: 170 --------RVLHQMPLLNLSLDL-----------------SLNPMNFIQPGAF-KEIRLH 203

Query: 447 FIDLSNNSLSGPIPECLVDSIT-LIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEG 505
            + L NN  S  + +  +  +  L    L L  F                   N+   E 
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR------------------NEGNLEK 245

Query: 506 PLPQSLANCSRLQVLNVANNRIDDTF---PHWLAQLPELLVLILRSNKFYGLIGNTDARV 562
               +L     L +       +D            L  +    L S     +   +    
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---- 301

Query: 563 IFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGI 622
                + L+L   +F    PT   ++LK                                
Sbjct: 302 YNFGWQHLELVNCKFGQ-FPTLKLKSLK-------------------------------- 328

Query: 623 DVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT--GRIPSSLRNLTVL 680
                       + F+SN+      E    L  L+ L+ S N L+  G    S    T L
Sbjct: 329 -----------RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 681 ESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGP 722
           + LDLS N ++  + +    L  L  L+  H+ L+       
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (293), Expect = 3e-27
 Identities = 52/374 (13%), Positives = 107/374 (28%), Gaps = 52/374 (13%)

Query: 383 NLSDNFLTDVEQVPLKNLRFLDLRSNLLQG---SVMVLPPRLIFFSISNNKLTGEIPCSF 439
              +     +      + + LDL  N L+          P L    +S  ++      ++
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 440 CTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILN 499
            + + +  + L+ N +            +L  L     +          +   L  L + 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 500 DNQFEG-PLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL----LVLILRSNKFYGL 554
            N  +   LP+  +N + L+ L++++N+I   +   L  L ++    L L L  N    +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 555 IGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYS 614
                  +   +L  L L  N  +  +     Q L                         
Sbjct: 193 QPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGLA------------------------ 225

Query: 615 AFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHL---TGRIP 671
                      + +  + L    +    E      +  L  L +  F   +L      I 
Sbjct: 226 ----------GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 672 SSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDS 731
                LT + S  L S  +        +       L L + +         +  + +  +
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLT 331

Query: 732 YIGNLGLCGFPLSD 745
           +  N G   F   D
Sbjct: 332 FTSNKGGNAFSEVD 345

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  255 bits (654), Expect = 5e-75
 Identities = 107/578 (18%), Positives = 192/578 (33%), Gaps = 50/578 (8%)

Query: 39  SNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPV 98
             D   +           +T L+L     SG++P  I QL+++  L L  + E   E   
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 99  WKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQ 158
               I      ++     +      +DY      S L    +        I  S     +
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 159 LTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLT 218
            T +    N+ +  +   +  L +L    +  +  V                +  + Q  
Sbjct: 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQY 238

Query: 219 GRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT--------GSI 270
                    L++L  + +        +P++L   LP +++I++  NR             
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQA 297

Query: 271 PSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKL 330
            +       +  I +  NNL          ++K L  L    N+L    KL A  +  KL
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE--GKLPAFGSEIKL 355

Query: 331 LKLGLSACNISEFPDFLRSQ-DRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFL 389
             L L+   I+E P       +++E L  + NK+   IPN F       +  ++ S N +
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEI 414

Query: 390 TDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFID 449
             V+      L     +              +   ++SNN+++      F T +P+  I+
Sbjct: 415 GSVDGKNFDPLDPTPFKG-----------INVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 450 LSNNSLSG-------PIPECLVDSITLIWLDLHLNSFNGSIPQISANG-SGLVNLILNDN 501
           L  N L+           E   ++  L  +DL  N          A     LV + L+ N
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 502 QFEGPLPQSLANCSRLQVL------NVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
            F    P    N S L+        +   NR    +P  +   P L  L + SN    + 
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN 582

Query: 556 GNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMM 593
                  I P + +LD+  N    +  +     ++A M
Sbjct: 583 EK-----ITPNISVLDIKDNPNISIDLSYVCPYIEAGM 615

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  218 bits (558), Expect = 1e-61
 Identities = 80/596 (13%), Positives = 165/596 (27%), Gaps = 104/596 (17%)

Query: 143 CNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG----IP 198
                    SL +  ++T LSL     SG +P  +  L +L  L L  +          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLR--NLVTLRLSGNSLNGTIPSWLFTVLPYL 256
                                            +L+   ++ +    +I      +    
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-SSRITLKD 185

Query: 257 EVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
             I    N  T  +   +  L  L    + ++       +C     +N +Y    +    
Sbjct: 186 TQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAEN-ICEAWENENSEYAQQYKT--- 240

Query: 317 VNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK 376
                             L   N+ +          L  +++       ++P +   + +
Sbjct: 241 ----------------EDLKWDNLKD----------LTDVEVYNCPNLTKLPTFLKALPE 274

Query: 377 DTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKL-TGEI 435
             +  +N++ N     EQ+            +    +   +  ++    I  N L T  +
Sbjct: 275 --MQLINVACNRGISGEQLK----------DDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
             S      +  ++   N L G +P      I L  L+L  N               + N
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 496 LILNDNQFEG-PLPQSLANCSRLQVLNVANNRID-------DTFPHWLAQLPELLVLILR 547
           L    N+ +  P      + S +  ++ + N I        D       +   +  + L 
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 548 SNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMH 607
           +N+         +      L  ++L  N  T +                           
Sbjct: 442 NNQISKFPKELFST--GSPLSSINLMGNMLTEIPKN------------------------ 475

Query: 608 RFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEV-VGKLNLLKMLNFSHNHL 666
                     +LK  +       +   ID   N+      +     L  L  ++ S+N  
Sbjct: 476 ----------SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525

Query: 667 TGRIPSSLRNLTVLESL------DLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEG 716
           +   P+   N + L+        D   NR + + P  +T    L++L +  N +  
Sbjct: 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  208 bits (532), Expect = 5e-58
 Identities = 75/487 (15%), Positives = 152/487 (31%), Gaps = 89/487 (18%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDF------------------NSSLISSG 50
           +    + +   +    ++  L  L    +G++ F                          
Sbjct: 188 IGQLSNNI-TFVSK--AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244

Query: 51  FGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLK 110
           +  L  LT + + N     ++P+ +  L +M  ++++ N                    +
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN---------------RGISGE 289

Query: 111 ELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFS 170
           +L      ++   +   +  +   + Y +L       P+  SL  + +L  L   YN   
Sbjct: 290 QLKDDWQALADAPVGEKIQIIY--IGYNNLKT----FPVETSLQKMKKLGMLECLYNQLE 343

Query: 171 GHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPS--CLKGL 228
           G +P+F     +L  LNL  N +     +      Q+  L  + N+L   +P+    K +
Sbjct: 344 GKLPAF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSV 401

Query: 229 RNLVTLRLSGNSLNGTIPSWLFTVLPY-------LEVIHLRDNRFTGSIPSTIFELVNLT 281
             +  +  S N +   +    F  L         +  I+L +N+ +            L+
Sbjct: 402 SVMSAIDFSYNEIGS-VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 282 SIRLSSNNLSGHIELCM------FARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGL 335
           SI L  N L+   +  +      F     L  + L  N+L+  +     +T P L+ + L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 336 SACNISEFPDFLRSQDRLEWLQLSE------NKIYGRIPNWFWDIGKDTLYNLNLSDNFL 389
           S  + S+FP    +   L+   +        N+     P          L  L +  N +
Sbjct: 521 SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS--LTQLQIGSNDI 578

Query: 390 TDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFID 449
             V +    N+  LD+                      +N          C         
Sbjct: 579 RKVNEKITPNISVLDI---------------------KDNPNISIDLSYVCPYIEAGMYM 617

Query: 450 LSNNSLS 456
           L  +   
Sbjct: 618 LFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  172 bits (437), Expect = 2e-45
 Identities = 67/539 (12%), Positives = 147/539 (27%), Gaps = 106/539 (19%)

Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
           +  +++ L L     +GR+P  +  L  L  L L  +                       
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL--------------- 123

Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
                   P  I   ++    +    +                 +  L ++ ++ + +  
Sbjct: 124 ------FGPKGISANMSDEQKQKMRMHYQKTF----VDYDPREDFSDLIKDCINSDPQQ- 172

Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNL 382
              +  K  ++ L                    +    N I   +               
Sbjct: 173 --KSIKKSSRITLK----------------DTQIGQLSNNITF-VSKAVMR--------- 204

Query: 383 NLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTA 442
                         L  LR   + ++        +       +    +        +   
Sbjct: 205 --------------LTKLRQFYMGNSPFVAEN--ICEAWENENSEYAQQYKTEDLKWDNL 248

Query: 443 APIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSF--------NGSIPQISANGSGLV 494
             +  +++ N      +P  L     +  +++  N          +      +  G  + 
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 495 NLILNDNQF-EGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYG 553
            + +  N     P+  SL    +L +L    N+++   P       +L  L L  N+   
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE 367

Query: 554 LIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMR---GSNTSTVQVQYMHRFG 610
           +  N        ++  L  + N+   +      +++  M       N            G
Sbjct: 368 IPANFCGF--TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN----------EIG 415

Query: 611 RYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-- 668
                 F    +D           I+ S+N+      E+    + L  +N   N LT   
Sbjct: 416 SVDGKNFD--PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 669 -----RIPSSLRNLTVLESLDLSSNRLVGQIPT-QLTSLNFLSKLNLSHNQLEGPIPQG 721
                    + +N  +L S+DL  N+L       + T+L +L  ++LS+N      P  
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  148 bits (376), Expect = 2e-37
 Identities = 59/478 (12%), Positives = 129/478 (26%), Gaps = 116/478 (24%)

Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDA 323
           + +      ++     +T + L     SG +      +L  L+ L L  +   VN     
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVN----- 120

Query: 324 NSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLN 383
                               P  + +    E  Q           ++        L    
Sbjct: 121 ---------------ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 384 LSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAA 443
           ++ +         +K    + L+   +                 +N +T  +  +     
Sbjct: 166 INSDPQQ----KSIKKSSRITLKDTQI--------------GQLSNNITF-VSKAVMRLT 206

Query: 444 PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQF 503
            +    + N+                   +        +      N   L ++ + +   
Sbjct: 207 KLRQFYMGNSPFVAENICEA-----WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 504 EGPLPQSLANCSRLQVLNVANNRI--------DDTFPHWLAQLPELLVLILRSNKFYGL- 554
              LP  L     +Q++NVA NR         D           ++ ++ +  N      
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 555 ----IGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFG 610
               +          KL +L+   N+  G LP   F +   +                  
Sbjct: 322 VETSLQK------MKKLGMLECLYNQLEGKLPA--FGSEIKLA----------------- 356

Query: 611 RYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRI 670
                                   ++ + N+         G    ++ L+F+HN L   I
Sbjct: 357 -----------------------SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-I 392

Query: 671 PSSL--RNLTVLESLDLSSNRLVG-------QIPTQLTSLNFLSKLNLSHNQLEGPIP 719
           P+    ++++V+ ++D S N +          +         +S +NLS+NQ+     
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (298), Expect = 8e-28
 Identities = 44/340 (12%), Positives = 106/340 (31%), Gaps = 48/340 (14%)

Query: 420 RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP----IPECLVDSITLIWLDLH 475
           R+   S+     +G +P +      +E + L ++          P+ +  +++       
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 476 LNSFNGSIPQ--ISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPH 533
              +  +        + S L+   +N +  +  + +S     +   +   +N I      
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSK 200

Query: 534 WLAQLPELLVLILRSNKFYGLIGNTDARVI-----------------FPKLRILDLSRNE 576
            + +L +L    + ++ F                                L  +++    
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 577 FTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFL--- 633
               LPT + + L  M         Q+  +       +   + + +  +   L+      
Sbjct: 261 NLTKLPT-FLKALPEM---------QLINV-----ACNRGISGEQLKDDWQALADAPVGE 305

Query: 634 ---VIDFSSNRF-EGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNR 689
              +I    N      +   + K+  L ML   +N L G    +  +   L SL+L+ N+
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQ 364

Query: 690 LVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQS 729
           +             +  L+ +HN+L+  IP      +   
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSV 403

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 31/271 (11%), Positives = 77/271 (28%), Gaps = 28/271 (10%)

Query: 471 WLDLHLNSFNGSIPQISANGSG-LVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRI-- 527
           W         G+ P +S N +G +  L L      G +P ++   + L+VL + ++    
Sbjct: 60  WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119

Query: 528 --DDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRY 585
                 P  ++              +     + D R  F  L    ++ +     +    
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-- 177

Query: 586 FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQ 645
                           Q+  +            +  +   +  L+        ++ F  +
Sbjct: 178 -------SSRITLKDTQIGQLSNN---------ITFVSKAVMRLTKLRQFYMGNSPFVAE 221

Query: 646 IPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLS 705
                      +  N  +            NL  L  +++ +   + ++PT L +L  + 
Sbjct: 222 NI-----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 706 KLNLSHNQLEGPIPQGPQFNTFQSDSYIGNL 736
            +N++ N+          +           +
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKI 307

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 4/89 (4%)

Query: 660 NFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGP-- 717
           N   +    +   SL +   +  L L      G++P  +  L  L  L L  +  +    
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 718 --IPQGPQFNTFQSDSYIGNLGLCGFPLS 744
              P+G   N          +      + 
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVD 151

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  250 bits (640), Expect = 2e-71
 Identities = 107/578 (18%), Positives = 186/578 (32%), Gaps = 54/578 (9%)

Query: 41  DFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWK 100
           D               +T L+L+     G++P  I QL+++  L    + E         
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 101 GLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLT 160
             +      +      +    + LDY      S L    +     + PI        + T
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 161 SLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGR 220
            +    N  +  I   +  L +L  +    +                   +  + +    
Sbjct: 429 QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYEN 482

Query: 221 LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTG---------SIP 271
                  L++L  + L        +P +L+  LP L+ +++  NR             + 
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 272 STIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLL 331
                   +    +  NNL          ++  L  L    N++     L+A  T  KL 
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV---RHLEAFGTNVKLT 598

Query: 332 KLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLT 390
            L L    I E P DF    D++E L  S NK+   IPN F       + +++ S N + 
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 391 DVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL 450
                            N+               ++S N++       F T +PI  I L
Sbjct: 658 -------------SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 451 SNNSLS-------GPIPECLVDSITLIWLDLHLNSFNGSIPQISANG-SGLVNLILNDNQ 502
           SNN ++        P      ++  L  +DL  N          A     L N+ ++ N 
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 503 FEGPLPQSLANCSRLQVLN------VANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIG 556
           F    P    N S+L+            NRI   +P  +   P L+ L + SN    +  
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823

Query: 557 NTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMR 594
                 + P+L ILD++ N    +  T     ++A M 
Sbjct: 824 K-----LTPQLYILDIADNPNISIDVTSVCPYIEAGMY 856

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  229 bits (585), Expect = 8e-64
 Identities = 90/578 (15%), Positives = 177/578 (30%), Gaps = 69/578 (11%)

Query: 4   GQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLS 63
           G+V GL L+     G +P   ++  L  L+ L+ G++    S    G   L         
Sbjct: 323 GRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 64  NSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIV 123
           +          +    ++   DL ++   R    +     ++   LK+  +  +      
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRN-PEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 124 LDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQL 183
           +  ++  L+  L  ++           A           +  Y     +     S+LK L
Sbjct: 440 ISKAIQRLTK-LQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDL 493

Query: 184 YYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG---------RLPSCLKGLRNLVTL 234
             + L     +  +PD   +L +L  L+++ N+            RL         +   
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 235 RLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHI 294
            +  N+L     S     +  L ++    N+            V LT ++L  N +   I
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EI 610

Query: 295 ELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQD--- 351
                A    ++ L  S N+L     +    +   +  +  S   I      +       
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 352 ---RLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP----------LK 398
                  + LS N+I       F       +  + LS+N +T + +              
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSP--ISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 399 NLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
            L  +DLR N L      L       ++                  +  +D+S N  S  
Sbjct: 729 LLTTIDLRFNKLTS----LSDDFRATTLPY----------------LSNMDVSYNCFSS- 767

Query: 459 IPECLVDSITLIWLDLHL------NSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLA 512
            P   ++S  L    +        N      P        L+ L +  N     + + L 
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL- 825

Query: 513 NCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNK 550
              +L +L++A+N         +    E  + +L  +K
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  210 bits (537), Expect = 2e-57
 Identities = 80/619 (12%), Positives = 168/619 (27%), Gaps = 104/619 (16%)

Query: 161 SLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGR 220
           + +   + +       L +  ++  L+L      G +PD+   LT+L  L    +  T  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 221 LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT-----GSIPSTIF 275
                             + +              L +  L  +          I     
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 276 ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGL 335
             +  T I   +N ++   +     RL  LQ +Y + +  + +     N           
Sbjct: 423 ISLKDTQIGNLTNRITFISK--AIQRLTKLQIIYFANSPFTYD-----NIAVDWEDANSD 475

Query: 336 SACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV 395
            A           +   L  ++L       ++P++ +D+ +  L +LN++ N      Q+
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE--LQSLNIACNRGISAAQL 533

Query: 396 P------------LKNLRFLDLRSNLLQGSVMVLPPRLIFFS--------ISNNKLTGEI 435
                           ++   +  N L+      P                 +NK+   +
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEE----FPASASLQKMVKLGLLDCVHNKVR-HL 588

Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS--GL 493
             +F T   +  + L  N +     +    +  +  L    N     IP I    S   +
Sbjct: 589 E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646

Query: 494 VNLILNDNQFEG-----PLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRS 548
            ++  + N+                      + ++ N I        A    +  +IL +
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 549 NKFYGLIGNTDARVIF-----PKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQV 603
           N    +  N+             L  +DL  N+ T +        L  +           
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL----------- 755

Query: 604 QYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSH 663
                                          +D S N F    P      + LK     H
Sbjct: 756 -----------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785

Query: 664 ------NHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL-EG 716
                 N +  + P+ +     L  L + SN +   +  +L     L  L+++ N     
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISI 842

Query: 717 PIPQGPQFNTFQSDSYIGN 735
            +     +        + +
Sbjct: 843 DVTSVCPYIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  188 bits (479), Expect = 6e-50
 Identities = 77/468 (16%), Positives = 145/468 (30%), Gaps = 76/468 (16%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           +  + S       +          E  N        +   S +  L  LT + L N    
Sbjct: 453 IYFANSPFTYDNIAVD-------WEDANSDYAKQYENEELS-WSNLKDLTDVELYNCPNM 504

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSL 128
            Q+P  +  L ++ SL+++ N   R  S     L  + T+L +                 
Sbjct: 505 TQLPDFLYDLPELQSLNIACN---RGISAA--QLKADWTRLAD---------------DE 544

Query: 129 TNLSSSLSYLHLTGCNLIG-PIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187
                 +   ++   NL   P  ASL  + +L  L   +N    H+ +F     +L  L 
Sbjct: 545 DTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAF-GTNVKLTDLK 601

Query: 188 LEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSC--LKGLRNLVTLRLSGNSLNGTI 245
           L+ N +     D      Q+  L  S N+L   +P+    K +  + ++  S N +    
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS-E 659

Query: 246 PSWLFTVLPY-----LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS------GHI 294
              +   +          + L  N               +++I LS+N ++         
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 295 ELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLE 354
           +   +     L  + L  N+L+  +     +T P L  + +S    S FP    +  +L+
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLK 779

Query: 355 WLQLSE------NKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSN 408
              +        N+I  + P          L  L +  N +  V++     L  LD+   
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPS--LIQLQIGSNDIRKVDEKLTPQLYILDI--- 834

Query: 409 LLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS 456
                             ++N        S C         L  +   
Sbjct: 835 ------------------ADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  150 bits (379), Expect = 2e-37
 Identities = 65/568 (11%), Positives = 159/568 (27%), Gaps = 124/568 (21%)

Query: 160 TSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG 219
            ++ +     + +I  + +       L+ +      G  ++ ++    +F +   +    
Sbjct: 255 ANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGD 313

Query: 220 RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVN 279
           +    L     +  L L+G    G +P  +   L  L+V+    +  T S      E + 
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 280 LTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKL----DANSTFPKLLKLGL 335
                   + +  H +       + L    L Q+ ++ N ++      +    K  ++G 
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 336 SACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV 395
               I+     ++   +L+ +  + +                   + N       + E++
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-------AVDWEDANSDYAKQYENEEL 485

Query: 396 PLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSL 455
              NL+                   L    + N     ++P        ++ ++++ N  
Sbjct: 486 SWSNLK------------------DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 456 SGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEG-PLPQSLANC 514
                               L +    +      G  +    +  N  E  P   SL   
Sbjct: 528 ISAAQ---------------LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 515 SRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSR 574
            +L +L+  +N+        +  L                           KL  L L  
Sbjct: 573 VKLGLLDCVHNK--------VRHLEAFGTN--------------------VKLTDLKLDY 604

Query: 575 NEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLV 634
           N+    +P  +      +                                          
Sbjct: 605 NQIEE-IPEDFCAFTDQV----------------------------------------EG 623

Query: 635 IDFSSNRFEGQIPEVVGKLNL--LKMLNFSHNHLTGRIPS-----SLRNLTVLESLDLSS 687
           + FS N+ +  IP +    ++  +  ++FS+N +     +              ++ LS 
Sbjct: 624 LGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 688 NRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
           N +         + + +S + LS+N + 
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  126 bits (317), Expect = 6e-30
 Identities = 49/300 (16%), Positives = 102/300 (34%), Gaps = 33/300 (11%)

Query: 24  SSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPS--EISQLSKM 81
            +      L  L L  N     +          +  L  S++     IP+      +  M
Sbjct: 589 EAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVM 646

Query: 82  LSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMS----TIVLDYSLTNLSSSLSY 137
            S+D S N   +I S   + +  ++   K +  S V +S               S  +S 
Sbjct: 647 GSVDFSYN---KIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP-IST 701

Query: 138 LHLTGCNL-------IGPIPASLANLPQLTSLSLSYNHFSGHIPSF-LSHLKQLYYLNLE 189
           + L+   +       + P   +  N   LT++ L +N  +     F  + L  L  +++ 
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS 761

Query: 190 QNNLVGGIPDSFVNLTQLSFLDL------SWNQLTGRLPSCLKGLRNLVTLRLSGNSLNG 243
            N      P   +N +QL    +        N++  + P+ +    +L+ L++  N +  
Sbjct: 762 YNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR- 819

Query: 244 TIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLK 303
            +   L    P L ++ + DN       +++   +      L  +     I  C    ++
Sbjct: 820 KVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ-DIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  109 bits (275), Expect = 7e-25
 Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 21/248 (8%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNS----SLISSGFGRLISLTHLNLSN 64
           L  S + L   IP+  +   +  + +++   N   S       S    + I+ + + LS 
Sbjct: 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 65  SYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGL---IENLTKLKELVLSEVDMST 121
           +          +  S + ++ LS N    I     K      +N   L  + L    +++
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 122 IVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSY------NHFSGHIPS 175
           +  D+  T L   LS + ++        P    N  QL +  + +      N      P+
Sbjct: 743 LSDDFRATTLPY-LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLT-GRLPSCLKGLR-NLVT 233
            ++    L  L +  N++   + +      QL  LD++ N      + S    +   +  
Sbjct: 801 GITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857

Query: 234 LRLSGNSL 241
           L       
Sbjct: 858 LLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.0 bits (231), Expect = 1e-19
 Identities = 38/280 (13%), Positives = 86/280 (30%), Gaps = 22/280 (7%)

Query: 448 IDLSNNSLSGPIPECLVDSITLIW-LDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGP 506
           +D  N           + S+   W  +  L+ +         N   +  L L     +G 
Sbjct: 281 LDGKNWRYYSGTINNTIHSLN--WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPK 566
           +P ++   + L+VL+   +    +   +  +     +   R ++               +
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK-MFLDYDQR 397

Query: 567 LRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEM 626
           L + DL ++        +  +         +    Q+  +            +  I   +
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKD----SRISLKDTQIGNL---------TNRITFISKAI 444

Query: 627 NILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLS 686
             L+   +I F+++ F      V       +  N  +         S  NL  L  ++L 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 687 SNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNT 726
           +   + Q+P  L  L  L  LN++ N+          +  
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  235 bits (601), Expect = 7e-68
 Identities = 115/598 (19%), Positives = 192/598 (32%), Gaps = 69/598 (11%)

Query: 3   TGQVIGLDLSCSWLH-GSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
              V  +   C       +P +    +    + ++L  N     L S  F     L  L+
Sbjct: 8   IEVVPNITYQCMDQKLSKVPDD----IPSSTKNIDLSFNPL-KILKSYSFSNFSELQWLD 62

Query: 62  LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
           LS              L  + +L L+ N           G    LT L+ LV        
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAV------ 112

Query: 122 IVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSG-HIPSFLSHL 180
                                  L       +  L  L  L++++N      +P++ S+L
Sbjct: 113 --------------------ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 181 KQLYYLNLEQNNLVGGIPDSFVNLTQLSF----LDLSWNQLTGRLPSCLKGLRNLVTLRL 236
             L +++L  N +     +    L +       LD+S N +        +G+  L  L L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTL 211

Query: 237 SGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSI------PSTIFELVNLTSIRLS-SNN 289
            GN  +  I       L  L V  L    F          PS +  L ++T      +  
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 290 LSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRS 349
                ++  F  L N+  + L+   +     L+      K   L +  C + +FP     
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQFPTL--D 326

Query: 350 QDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ-----VPLKNLRFLD 404
              L+ L L+ NK    I      +    L  L+LS N L+         +   +LR LD
Sbjct: 327 LPFLKSLTLTMNKG--SISFKKVALPS--LSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 405 LRSNLLQGSVMVLP--PRLIFFSISNNKLTGEIPCS-FCTAAPIEFIDLSNNSLSGPIPE 461
           L  N              L      ++ L      S F +   + ++D+S  +       
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 462 CLVDSITLIWLDLHLNSFNGSIPQ-ISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVL 520
             +   +L  L +  NSF  +    + AN + L  L L+  Q E           RLQ+L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 521 NVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFT 578
           N+++N +         QL  L  L    N+     G    +     L   +L+ N   
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI--LQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  224 bits (574), Expect = 4e-64
 Identities = 109/622 (17%), Positives = 187/622 (30%), Gaps = 110/622 (17%)

Query: 107 TKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSY 166
           +  K + LS   +  +   YS +N S  L +L L+ C +      +   L  L++L L+ 
Sbjct: 32  SSTKNIDLSFNPLKIL-KSYSFSNFSE-LQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 167 NHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG-RLPSCL 225
           N      P   S L  L  L   +  L          L  L  L+++ N +   +LP+  
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 226 KGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL----EVIHLRDNRFTGSIPSTIFELVNLT 281
             L NLV + LS N +   I       L         + +  N     I    F+ + L 
Sbjct: 150 SNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLH 207

Query: 282 SIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDA--NSTFPKLLKLGLSACN 339
            + L  N  S +I       L  L    L          L+    S    L  + +    
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 340 ISEF------PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVE 393
           ++                 +  + L+   I   + +           +L++    L    
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDVPKHFK---WQSLSIIRCQLKQFP 323

Query: 394 QVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNN 453
            + L  L+ L L                     + NK +         +  + ++DLS N
Sbjct: 324 TLDLPFLKSLTL---------------------TMNKGSISFKKVALPS--LSYLDLSRN 360

Query: 454 SLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLAN 513
           +LS                     S++          + L +L L+ N     +  +   
Sbjct: 361 ALSF----------------SGCCSYSDL------GTNSLRHLDLSFNGAII-MSANFMG 397

Query: 514 CSRLQVLNVANNRIDDTFPHW-LAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDL 572
              LQ L+  ++ +           L +LL L +                    L  L +
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--LTSLNTLKM 455

Query: 573 SRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIF 632
           + N F     +  F N   +                                        
Sbjct: 456 AGNSFKDNTLSNVFANTTNLT--------------------------------------- 476

Query: 633 LVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVG 692
             +D S  + E     V   L+ L++LN SHN+L     S    L  L +LD S NR+  
Sbjct: 477 -FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 693 QIPTQLTSLNFLSKLNLSHNQL 714
                      L+  NL++N +
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  222 bits (568), Expect = 3e-63
 Identities = 97/579 (16%), Positives = 167/579 (28%), Gaps = 88/579 (15%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
            ++ SS   + L+   L      S +N  +L  L LS              L  L  L L
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW 248
             N +    P SF  LT L  L     +L       +  L  L  L ++ N ++      
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 249 LFTVLPYLEVIHLRDNRFTG---------------------------SIPSTIFELVNLT 281
            F+ L  L  + L  N                                I    F+ + L 
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207

Query: 282 SIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDA--NSTFPKLLKLGLSACN 339
            + L  N  S +I       L  L    L          L+    S    L  + +    
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 340 ISEF------PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVE 393
           ++                 +  + L+   I   + +           +L++    L    
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDVPKHFK---WQSLSIIRCQLKQFP 323

Query: 394 QVPLKNLRFLDLRSNLLQGSVM-VLPPRLIFFSISNNKLTGEIPCSFCTAAP--IEFIDL 450
            + L  L+ L L  N    S   V  P L +  +S N L+    CS+       +  +DL
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 451 SNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQIS-ANGSGLVNLILNDNQFEGPLPQ 509
           S N     +    +    L  LD   ++        +  +   L+ L ++    +     
Sbjct: 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 510 SLANCSRLQVLNVANNRI-DDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLR 568
                + L  L +A N   D+T  +  A    L  L L   +   +           +L+
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT--LHRLQ 500

Query: 569 ILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNI 628
           +L++S N     L + ++  L +                           L         
Sbjct: 501 LLNMSHNNLLF-LDSSHYNQLYS---------------------------LS-------- 524

Query: 629 LSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT 667
                 +D S NR E     +      L   N ++N + 
Sbjct: 525 -----TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  212 bits (543), Expect = 8e-60
 Identities = 103/579 (17%), Positives = 183/579 (31%), Gaps = 48/579 (8%)

Query: 147 GPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQ 206
           G +   +  +P +T         S  +P  +        ++L  N L      SF N ++
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 207 LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
           L +LDLS  ++         GL +L  L L+GN +    P   F+ L  LE +   + + 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKL 116

Query: 267 TGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD---A 323
                  I +L+ L  + ++ N +        F+ L NL ++ LS N +   T  D    
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 324 NSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLN 383
                  L L +S   I    D      +L  L L  N     I           L+   
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHR 235

Query: 384 LSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAA 443
           L      D   + +     ++   ++           +  F ++      +    F   A
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDV----------TIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 444 PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQF 503
            +  + L+  S+     E +        L +         P  + +   L +L L  N+ 
Sbjct: 286 NVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLK-QFP--TLDLPFLKSLTLTMNKG 340

Query: 504 EGPLPQSLANCSRLQVLNVANNRIDDTFPH--WLAQLPELLVLILRSNKFYGLIGNTDAR 561
                        L  L+++ N +  +            L  L L  N    +  N    
Sbjct: 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG- 397

Query: 562 VIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
               +L+ LD   +    V     F +L           + + Y +    +   F  L  
Sbjct: 398 --LEELQHLDFQHSTLKRVTEFSAFLSL------EKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIP-EVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVL 680
           +            +  + N F+      V      L  L+ S   L          L  L
Sbjct: 450 L----------NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

Query: 681 ESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIP 719
           + L++S N L+    +    L  LS L+ S N++E    
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  205 bits (523), Expect = 5e-57
 Identities = 102/553 (18%), Positives = 167/553 (30%), Gaps = 53/553 (9%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           LDLS   +        +   L +L  L L  N    S     F  L SL +L    +  +
Sbjct: 61  LDLSRCEIETIEDK--AWHGLHHLSNLILTGNPI-QSFSPGSFSGLTSLENLVAVETKLA 117

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLD--Y 126
                 I QL  +  L+++ N    I S        NLT L  + LS   + TI ++   
Sbjct: 118 SLESFPIGQLITLKKLNVAHN---FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 127 SLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS-FLSHLKQLYY 185
            L         L ++  N I  I        +L  L+L  N  S +I    L +L  L+ 
Sbjct: 175 FLRENPQVNLSLDMSL-NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 186 LNLEQNNLVGGI------PDSFVNLTQLSF--LDLSWNQLTGRLPSCLKGLRNLVTLRLS 237
             L               P     L  ++     L++             L N+  + L+
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 238 GNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELC 297
           G S+   +           + + +   +     P+   +L  L S+ L+ N  S   +  
Sbjct: 294 GVSIK-YLEDVPK--HFKWQSLSIIRCQLK-QFPT--LDLPFLKSLTLTMNKGSISFK-- 345

Query: 298 MFARLKNLQYLYLSQNRLS-VNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWL 356
               L +L YL LS+N LS       ++     L  L LS              + L+ L
Sbjct: 346 -KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404

Query: 357 QLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMV 416
               + +        +    + L  L++S              L                
Sbjct: 405 DFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGL---------------- 447

Query: 417 LPPRLIFFSISNNKLTGEIP-CSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLH 475
               L    ++ N          F     + F+DLS   L             L  L++ 
Sbjct: 448 --TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 476 LNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID-----DT 530
            N+              L  L  + N+ E            L   N+ NN +        
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565

Query: 531 FPHWLAQLPELLV 543
           F  W+ +  + LV
Sbjct: 566 FLQWVKEQKQFLV 578

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 9e-11
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
            +D S    E    +    L+ L  L  + N +    P S   LT LE+L     +L   
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQS 729
               +  L  L KLN++HN +         F+   +
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTN 154

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  233 bits (596), Expect = 4e-67
 Identities = 117/604 (19%), Positives = 201/604 (33%), Gaps = 65/604 (10%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
             L +S   L  +   L      + + L  LT L L+                +L  L L
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW 248
             N L+     +      L  L      ++      L   + L +L L  N ++  I   
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLP 147

Query: 249 LFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLS-SNNLSGHIELCMFARLKNLQY 307
                  L+V+  ++N         +  L   T++ L+ + N    IE   F      Q 
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQS 206

Query: 308 LYLSQNRLSVNT-KLDANSTFPKLLKLGLSACNISEFPDFL---RSQDRLEWLQLSENKI 363
           L     +  +   K   NST   L        +  +    +     +  +E + L ++  
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 364 YGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ--VPLKNLRFLDLRSNLLQG---SVMVLP 418
           +    N F       L  L+L+   L+++    V L  L+ L L +N  +          
Sbjct: 267 FNISSNTFHCFSG--LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 419 PRLIFFSISNNKLTGEI-PCSFCTAAPIEFIDLSNNSL--SGPIPECLVDSITLIWLDLH 475
           P L   SI  N    E+          +  +DLS++ +  S      L +   L  L+L 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 476 LNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQS-LANCSRLQVLNVANNRIDDTFPHW 534
            N       +       L  L L   + +    QS   N   L+VLN++++ +D +    
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 535 LAQLPELLVLILRSNKFYGLIG-NTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMM 593
              LP L  L L+ N F       T++     +L IL LS  + +  +    F +LK M 
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMM- 502

Query: 594 RGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKL 653
                                                    +D S NR      E +  L
Sbjct: 503 ---------------------------------------NHVDLSHNRLTSSSIEALSHL 523

Query: 654 NLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQ 713
             +  LN + NH++  +PS L  L+   +++L  N L        +++ FL     +  +
Sbjct: 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKENMQK 578

Query: 714 LEGP 717
           LE  
Sbjct: 579 LEDT 582

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  231 bits (591), Expect = 2e-66
 Identities = 112/570 (19%), Positives = 193/570 (33%), Gaps = 40/570 (7%)

Query: 3   TGQVIGLDLSCSWLH-GSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
             + +    +C  L    IP      L    E L    N    ++ ++ F RLI+LT L+
Sbjct: 9   IEKEVNKTYNCENLGLNEIPGT----LPNSTECLEFSFNVL-PTIQNTTFSRLINLTFLD 63

Query: 62  LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
           L+                ++ +L L+ N  + +        +     LK L   +  +S+
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE----TALSGPKALKHLFFIQTGISS 119

Query: 122 IVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLK 181
           I     L N   +L  L+L   ++            +L  L    N         +S L+
Sbjct: 120 ID-FIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 182 QL--YYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKG--LRNLVTLRLS 237
           Q     LNL  N++  GI     +      L+    Q    +   LK   +++L      
Sbjct: 178 QATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 238 GNSLNGTIPSWLFTVLP--YLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIE 295
                  I   +F  L    +E I+L+ + F     +T      L  + L++ +LS  + 
Sbjct: 237 DMDDE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294

Query: 296 LCMFARLKNLQYLYLSQNRLSVNTKLDANS--TFPKLLKLGLSACNI--SEFPDFLRSQD 351
                 L  L+ L LS N+      L   S   FP L  L +             L + +
Sbjct: 295 SG-LVGLSTLKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 352 RLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSN 408
            L  L LS + I               L +LNLS N    ++         L  LDL   
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 409 LLQG----SVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPEC-- 462
            L+     S       L   ++S++ L       F     ++ ++L  N       +   
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 463 -LVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLN 521
            L     L  L L     +        +   + ++ L+ N+      ++L++   +  LN
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529

Query: 522 VANNRIDDTFPHWLAQLPELLVLILRSNKF 551
           +A+N I    P  L  L +   + LR N  
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  227 bits (582), Expect = 4e-65
 Identities = 102/605 (16%), Positives = 191/605 (31%), Gaps = 81/605 (13%)

Query: 125 DYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLY 184
                N + +   L L        IP +L        L  S+N       +  S L  L 
Sbjct: 9   IEKEVNKTYNCENLGLNE------IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLT 60

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT 244
           +L+L +  +     D+F +  +L  L L+ N L     + L G + L  L      ++  
Sbjct: 61  FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120

Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKN 304
                      LE ++L  N  +       F    L  +   +N +  ++     + L+ 
Sbjct: 121 DFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQ 178

Query: 305 LQ--YLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQ-DRLEWLQLSEN 361
                L L+ N ++       +S   + L  G +   +  F     S    L      + 
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 362 KIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRL 421
                 P  F  + + ++ ++NL  ++  ++                            L
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF------------------SGL 280

Query: 422 IFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNG 481
               ++   L+ E+P      + ++ + LS N           +  +L  L +  N+   
Sbjct: 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 482 SI-PQISANGSGLVNLILNDNQFE--GPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQL 538
            +      N   L  L L+ +  E        L N S LQ LN++ N           + 
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 539 PELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNT 598
           P+L +L L   +       +        L++L+LS +        + F  L A+      
Sbjct: 400 PQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPAL------ 451

Query: 599 STVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEG---QIPEVVGKLNL 655
                                               ++   N F     Q    +  L  
Sbjct: 452 ----------------------------------QHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
           L++L  S   L+     +  +L ++  +DLS NRL       L+ L  +  LNL+ N + 
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536

Query: 716 GPIPQ 720
             +P 
Sbjct: 537 IILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  202 bits (516), Expect = 4e-56
 Identities = 95/503 (18%), Positives = 168/503 (33%), Gaps = 41/503 (8%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSY-F 67
           L L  + +          F    L+ L+  +N     L       L   T+L+L+ +   
Sbjct: 134 LYLGSNHISSIKLP--KGFPTEKLKVLDFQNNAI-HYLSKEDMSSLQQATNLSLNLNGND 190

Query: 68  SGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYS 127
              I       +   SL+      + +     K     +  L      ++D   I     
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS--TIQSLWLGTFEDMDDEDISPAVF 248

Query: 128 LTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187
                 S+  ++L           +      L  L L+  H S  +PS L  L  L  L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

Query: 188 LEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPS-CLKGLRNLVTLRLSGNSLNG-TI 245
           L  N        S  N   L+ L +  N     L + CL+ L NL  L LS + +     
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 246 PSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNL 305
            +     L +L+ ++L  N           E   L  + L+   L        F  L  L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 306 QYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEF----PDFLRSQDRLEWLQLSEN 361
           + L LS + L ++++       P L  L L   +  +      + L++  RLE L LS  
Sbjct: 428 KVLNLSHSLLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 362 KIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRL 421
            +     + F  +    + +++LS N LT      L +L+ + L                
Sbjct: 487 DLSSIDQHAFTSLKM--MNHVDLSHNRLTSSSIEALSHLKGIYL---------------- 528

Query: 422 IFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLI-WLDLHLNSFN 480
              ++++N ++  +P      +    I+L  N L      C   +I  + W   ++    
Sbjct: 529 ---NLASNHISIILPSLLPILSQQRTINLRQNPLD-----CTCSNIYFLEWYKENMQKLE 580

Query: 481 GSIPQISANGSGLVNLILNDNQF 503
            +   +  N   L  + L+D   
Sbjct: 581 DTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  155 bits (394), Expect = 6e-40
 Identities = 87/540 (16%), Positives = 146/540 (27%), Gaps = 139/540 (25%)

Query: 186 LNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTI 245
            N E   L   IP +         L+ S+N L     +    L NL  L L+   +   I
Sbjct: 17  YNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WI 72

Query: 246 PSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNL 305
               F     L+ + L  N       + +     L  +      +S  I+       K L
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTL 131

Query: 306 QYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYG 365
           + LYL  N +S               KL                    + L    N I+ 
Sbjct: 132 ESLYLGSNHISSI----KLPKGFPTEKL--------------------KVLDFQNNAIHY 167

Query: 366 RIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFS 425
                   + + T  +LNL+ N +  +E     +  F  L                  F 
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN-----------------FG 210

Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQ 485
            + N L         T   +      +       P        +                
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM---------------- 254

Query: 486 ISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLI 545
                  + ++ L  + F      +    S LQ L++    +        ++LP      
Sbjct: 255 ------SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--------SELP------ 294

Query: 546 LRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQY 605
              +   GL            L+ L LS N+F   L      N  ++             
Sbjct: 295 ---SGLVGL----------STLKKLVLSANKFEN-LCQISASNFPSLT------------ 328

Query: 606 MHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQI-PEVVGKLNLLKMLNFSHN 664
                                        +    N    ++    +  L  L+ L+ SH+
Sbjct: 329 ----------------------------HLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 665 HLT--GRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGP 722
            +         LRNL+ L+SL+LS N  +            L  L+L+  +L+    Q P
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  129 bits (327), Expect = 2e-31
 Identities = 65/287 (22%), Positives = 113/287 (39%), Gaps = 16/287 (5%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSG-FGRLISLTHLNLSNSYF 67
           L +  +     + +   L  L  L  L+L  +D  +S   +     L  L  LNLS +  
Sbjct: 330 LSIKGNTKRLELGTGC-LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 68  SGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYS 127
                    +  ++  LDL+     R++    +   +NL  LK L LS   +     +  
Sbjct: 389 LSLKTEAFKECPQLELLDLAFT---RLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-EQL 444

Query: 128 LTNLSSSLSYLHLTGCNLIGPI---PASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLY 184
              L + L +L+L G +          SL  L +L  L LS+   S       + LK + 
Sbjct: 445 FDGLPA-LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT 244
           +++L  N L     ++  +L  + +L+L+ N ++  LPS L  L    T+ L  N L+ T
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS 291
             +     + +LE       +   +  +       L  +RLS   LS
Sbjct: 563 CSN-----IYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 8e-13
 Identities = 39/236 (16%), Positives = 66/236 (27%), Gaps = 45/236 (19%)

Query: 517 LQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNE 576
            + L  + N +        ++L  L  L L   + Y +  +T       +L  L L+ N 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ--HRLDTLVLTANP 92

Query: 577 FTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVID 636
               +        KA+                                          + 
Sbjct: 93  LIF-MAETALSGPKAL----------------------------------------KHLF 111

Query: 637 FSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPT 696
           F            +     L+ L    NH++            L+ LD  +N +      
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

Query: 697 QLTSLNFLS--KLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNI 750
            ++SL   +   LNL+ N + G  P       FQS ++ G   L       K S I
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  204 bits (522), Expect = 9e-60
 Identities = 86/332 (25%), Positives = 126/332 (37%), Gaps = 58/332 (17%)

Query: 425 SISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSG--PIPECLVDSITLIWLDLH-LNSFNG 481
              N    G +  +      +  +DLS  +L    PIP  L +   L +L +  +N+  G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 482 SIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL 541
            IP   A  + L  L +      G +P  L+    L  L+ + N +  T P  ++ LP L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 542 LVLILRSNKFYGLI----GNTDARVIFPKL-RILDLSRNEFTGVLPTRYFQNLKAMMRGS 596
           + +    N+  G I    G+      F KL   + +SRN  TG +P   F NL       
Sbjct: 152 VGITFDGNRISGAIPDSYGS------FSKLFTSMTISRNRLTGKIP-PTFANLN------ 198

Query: 597 NTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLL 656
                                                 +D S N  EG    + G     
Sbjct: 199 -----------------------------------LAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 657 KMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEG 716
           + ++ + N L   +   +     L  LDL +NR+ G +P  LT L FL  LN+S N L G
Sbjct: 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 717 PIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCS 748
            IPQG     F   +Y  N  LCG PL   C+
Sbjct: 283 EIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (497), Expect = 2e-56
 Identities = 84/313 (26%), Positives = 128/313 (40%), Gaps = 60/313 (19%)

Query: 3   TGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNL 62
           T +V  LDLS   L    P  SSL  LPYL  L +G  +     I     +L  L +L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 63  SNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTI 122
           +++  SG IP  +SQ+  +++LD S N                                 
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYN--------------------------------- 135

Query: 123 VLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQ 182
                   LS              G +P S+++LP L  ++   N  SG IP       +
Sbjct: 136 -------ALS--------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 183 LY-YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL 241
           L+  + + +N L G IP +F NL  L+F+DLS N L G         +N   + L+ NSL
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 242 NGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFAR 301
              +      +   L  + LR+NR  G++P  + +L  L S+ +S NNL G I       
Sbjct: 234 AFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGN 289

Query: 302 LKNLQYLYLSQNR 314
           L+       + N+
Sbjct: 290 LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (486), Expect = 7e-55
 Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 14/261 (5%)

Query: 60  LNLSNSYFSGQIPSEISQLSKMLSLDLSKND---EVRIESPVWKGLIENLTKLKELVLSE 116
            +  N  + G +    +Q  ++ +LDLS  +      I S      + NL  L  L +  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-----SLANLPYLNFLYIGG 85

Query: 117 VDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSF 176
           ++     +  ++  L + L YL++T  N+ G IP  L+ +  L +L  SYN  SG +P  
Sbjct: 86  INNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 177 LSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS-FLDLSWNQLTGRLPSCLKGLRNLVTLR 235
           +S L  L  +  + N + G IPDS+ + ++L   + +S N+LTG++P     L NL  + 
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 236 LSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIE 295
           LS N L G       +     + IHL  N     +   +    NL  + L +N + G + 
Sbjct: 204 LSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261

Query: 296 LCMFARLKNLQYLYLSQNRLS 316
                +LK L  L +S N L 
Sbjct: 262 Q-GLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  189 bits (483), Expect = 2e-54
 Identities = 87/284 (30%), Positives = 131/284 (46%), Gaps = 38/284 (13%)

Query: 132 SSSLSYLHLTGCNLIG--PIPASLANLPQLTSLSLS-YNHFSGHIPSFLSHLKQLYYLNL 188
           +  ++ L L+G NL    PIP+SLANLP L  L +   N+  G IP  ++ L QL+YL +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW 248
              N+ G IPD    +  L  LD S+N L+G LP  +  L NLV +   GN ++G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 249 LFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL 308
             +       + +  NR TG IP T   L NL  + LS N L G   +  F   KN Q +
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL-FGSDKNTQKI 226

Query: 309 YLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP 368
           +L++N L+                      ++ +     ++   L  L L  N+IYG +P
Sbjct: 227 HLAKNSLA---------------------FDLGKV-GLSKN---LNGLDLRNNRIYGTLP 261

Query: 369 NWFWDIGKDTLYNLNLSDNFLTDVEQVP----LKNLRFLDLRSN 408
                +    L++LN+S N L    ++P    L+        +N
Sbjct: 262 QGLTQL--KFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  163 bits (414), Expect = 6e-45
 Identities = 81/342 (23%), Positives = 128/342 (37%), Gaps = 79/342 (23%)

Query: 190 QNNLVGGIPDSFVNLTQLSFLDLSWNQLTGR--LPSCLKGLRNLVTLRLSG-NSLNGTIP 246
               +G + D+     +++ LDLS   L     +PS L  L  L  L + G N+L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 247 SWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHI--ELCMFARLKN 304
             +   L  L  +++     +G+IP  + ++  L ++  S N LSG +   +     L N
Sbjct: 95  PAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS---SLPN 150

Query: 305 LQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIY 364
           L  +    NR+S           P                 +         + +S N++ 
Sbjct: 151 LVGITFDGNRIS--------GAIP---------------DSYGSFSKLFTSMTISRNRLT 187

Query: 365 GRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFF 424
           G+IP         T  NLNL+                F+DL                   
Sbjct: 188 GKIP--------PTFANLNLA----------------FVDL------------------- 204

Query: 425 SISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIP 484
             S N L G+    F +    + I L+ NSL+  + + +  S  L  LDL  N   G++P
Sbjct: 205 --SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261

Query: 485 QISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNR 526
           Q       L +L ++ N   G +PQ   N  R  V   ANN+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (401), Expect = 3e-43
 Identities = 87/365 (23%), Positives = 116/365 (31%), Gaps = 87/365 (23%)

Query: 197 IPDSFVNLTQLS----FLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT--IPSWLF 250
           I     N T LS      D       G L         +  L LSG +L     IPS L 
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 251 TVLPYLEVIHLRD-NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLY 309
             LPYL  +++   N   G IP  I +L  L  + ++  N+SG I               
Sbjct: 74  N-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--------------- 117

Query: 310 LSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPN 369
                                             PDFL     L  L  S N + G +P 
Sbjct: 118 ----------------------------------PDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 370 WFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQG----SVMVLPPRLIFFS 425
               I                      L NL  +    N + G    S           +
Sbjct: 144 S---ISS--------------------LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQ 485
           IS N+LTG+IP +F     + F+DLS N L G              + L  NS    + +
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 486 ISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLI 545
           +      L  L L +N+  G LPQ L     L  LNV+ N +    P     L    V  
Sbjct: 240 VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSA 297

Query: 546 LRSNK 550
             +NK
Sbjct: 298 YANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  141 bits (358), Expect = 2e-37
 Identities = 61/330 (18%), Positives = 115/330 (34%), Gaps = 86/330 (26%)

Query: 379 LYNLNLSDNFLTDVEQVP-----LKNLRFLDLRS-NLLQGSVMVLPP------RLIFFSI 426
           + NL+LS   L     +P     L  L FL +   N L G    +PP      +L +  I
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP---IPPAIAKLTQLHYLYI 108

Query: 427 SNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIP-Q 485
           ++  ++G IP        +  +D S N+LSG +P  +     L+ +    N  +G+IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 486 ISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLI 545
             +      ++ ++ N+  G +P + AN + L  ++++ N ++                 
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK------ 221

Query: 546 LRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQY 605
                                 + + L++N     L                        
Sbjct: 222 --------------------NTQKIHLAKNSLAFDLG----------------------- 238

Query: 606 MHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNH 665
                              ++ +      +D  +NR  G +P+ + +L  L  LN S N+
Sbjct: 239 -------------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 666 LTGRIPSSLRNLTVLESLDLSSNRLVGQIP 695
           L G IP    NL   +    ++N+ +   P
Sbjct: 280 LCGEIPQGG-NLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.9 bits (185), Expect = 1e-14
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 635 IDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGR--IPSSLRNLTVLESLDLSS-NRLV 691
            D  +  + G + +   +   +  L+ S  +L     IPSSL NL  L  L +   N LV
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 692 GQIPTQLTSLNFLSKLNLSHNQLEGPIP 719
           G IP  +  L  L  L ++H  + G IP
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIP 118

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  193 bits (493), Expect = 3e-53
 Identities = 95/504 (18%), Positives = 163/504 (32%), Gaps = 51/504 (10%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
            NL  S   L L+   L      S  + P+L  L LS              L  L  L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW 248
             N +      +F  L+ L  L      L       +  L+ L  L ++ N +       
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 249 LFTVLPYLEVIHLRDNRFTG---------------------------SIPSTIFELVNLT 281
            F+ L  LE + L  N+                               I    F+ + L 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 282 SIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDA--NSTFPKLLKLGLSACN 339
            + L +N  S ++       L  L+   L          L+    S    L  L +    
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 340 IS-------EFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDV 392
           ++       +  D       +    L    I  R+ ++ ++ G     +L L +      
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFG---WQHLELVNCKFGQF 319

Query: 393 EQVPLKNLRFLDLRSNLLQGSVMVLP-PRLIFFSISNNKLT--GEIPCSFCTAAPIEFID 449
             + LK+L+ L   SN    +   +  P L F  +S N L+  G    S      ++++D
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 450 LSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISA--NGSGLVNLILNDNQFEGPL 507
           LS N +   +    +    L  LD   ++    + + S   +   L+ L ++        
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 508 PQSLANCSRLQVLNVANNRIDDTF-PHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPK 566
                  S L+VL +A N   + F P    +L  L  L L   +   L            
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--LSS 495

Query: 567 LRILDLSRNEFTGVLPTRYFQNLK 590
           L++L+++ N+    +P   F  L 
Sbjct: 496 LQVLNMASNQLK-SVPDGIFDRLT 518

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  185 bits (472), Expect = 2e-50
 Identities = 114/518 (22%), Positives = 194/518 (37%), Gaps = 38/518 (7%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
           S  +L+LS +              ++  LDLS+ +   IE     G  ++L+ L  L+L+
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILT 84

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHF-SGHIP 174
              + ++ L  + + LSS L  L     NL       + +L  L  L++++N   S  +P
Sbjct: 85  GNPIQSLALG-AFSGLSS-LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 175 SFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSF----LDLSWNQLTGRLPSCLKGLRN 230
            + S+L  L +L+L  N +          L Q+      LDLS N +    P   K +  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 231 LVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTG-----SIPSTIFE---LVNLTS 282
           L  L L  N  +  +       L  LEV  L    F           +  E    + +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 283 IRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISE 342
            RL+  +      + +F  L N+    L    +    ++   S       L L  C   +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI---ERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 343 FPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP-----L 397
           FP        L+ L  + NK      N F ++   +L  L+LS N L+            
Sbjct: 319 FPTL--KLKSLKRLTFTSNKGG----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 398 KNLRFLDLRSNLLQGSVMVLP--PRLIFFSISNNKLTGEIPCS-FCTAAPIEFIDLSNNS 454
            +L++LDL  N +           +L      ++ L      S F +   + ++D+S+  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 455 LSGPIPECLVDSITLIWLDLHLNSFNGSIPQ-ISANGSGLVNLILNDNQFEGPLPQSLAN 513
                        +L  L +  NSF  +    I      L  L L+  Q E   P +  +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 514 CSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
            S LQVLN+A+N++         +L  L  + L +N +
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  182 bits (464), Expect = 2e-49
 Identities = 100/599 (16%), Positives = 180/599 (30%), Gaps = 105/599 (17%)

Query: 125 DYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLY 184
              + N++     L+         IP +L       +L LS+N              +L 
Sbjct: 4   VEVVPNITYQCMELNFYK------IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQ 55

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT 244
            L+L +  +      ++ +L+ LS L L+ N +         GL +L  L     +L  +
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-S 114

Query: 245 IPSWLFTVLPYLEVIHLRDNRFT-GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLK 303
           + ++    L  L+ +++  N      +P     L NL  + LSSN +   I       L 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLH 173

Query: 304 NLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKI 363
            +  L                      L L LS   ++        + RL  L L  N  
Sbjct: 174 QMPLL---------------------NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 364 YGRIP-NWFWDIGKDTLYNLNL----SDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLP 418
              +       +    ++ L L    ++  L   ++  L+ L  L +    L        
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA------- 265

Query: 419 PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNS 478
                     +    +I   F     +    L + ++   + +   +      L+L    
Sbjct: 266 --------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCK 315

Query: 479 FNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID--DTFPHWLA 536
           F    P +      L  L    N+       S  +   L+ L+++ N +           
Sbjct: 316 FG-QFPTLKLKS--LKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 537 QLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGS 596
               L  L L  N    +  N        +L  LD   +    +     F +L+ ++   
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLG---LEQLEHLDFQHSNLKQMSEFSVFLSLRNLI--- 424

Query: 597 NTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLL 656
                                                 +D S          +   L+ L
Sbjct: 425 -------------------------------------YLDISHTHTRVAFNGIFNGLSSL 447

Query: 657 KMLNFSHNHLTGRIPS-SLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714
           ++L  + N             L  L  LDLS  +L    PT   SL+ L  LN++ NQL
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  177 bits (452), Expect = 8e-48
 Identities = 108/530 (20%), Positives = 184/530 (34%), Gaps = 39/530 (7%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
            IP N    L    + L+L  N     L S  F     L  L+LS              L
Sbjct: 21  KIPDN----LPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
           S + +L L+ N    +      G    L+ L++LV  E +++++  ++ + +L + L  L
Sbjct: 76  SHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASL-ENFPIGHLKT-LKEL 129

Query: 139 HLTGCNL-IGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLE---QNNLV 194
           ++    +    +P   +NL  L  L LS N       + L  L Q+  LNL      N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 195 GGIPDSFVNLTQLSFLDLSWNQLTGRLPS-CLKGLRNLVTLRLSGNSLNG-----TIPSW 248
             I        +L  L L  N  +  +   C++GL  L   RL                 
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 249 LFTVLPYLEVIHLRDNR---FTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNL 305
               L  L +   R      +   I      L N++S  L S  +    +       ++L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 306 QYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYG 365
           + +     +               L +L  ++         +     LE+L LS N +  
Sbjct: 310 ELVNCKFGQFP-------TLKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNGLSF 361

Query: 366 RIPNWFWDIGKDTLYNLNLSDNFLTDVEQV--PLKNLRFLDLRSNLLQ----GSVMVLPP 419
           +      D G  +L  L+LS N +  +      L+ L  LD + + L+     SV +   
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 420 RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT-LIWLDLHLNS 478
            LI+  IS+          F   + +E + ++ NS        +   +  L +LDL    
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 479 FNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID 528
                P    + S L  L +  NQ +          + LQ + +  N  D
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (374), Expect = 1e-37
 Identities = 97/523 (18%), Positives = 153/523 (29%), Gaps = 92/523 (17%)

Query: 205 TQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN 264
                LDLS+N L             L  L LS   +  TI    +  L +L  + L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 265 RFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDAN 324
                       L +L  +     NL+  +E      LK L+ L ++ N +      +  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 325 STFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNL 384
           S    L  L LS+  I            L  + L                      +L+L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLL-------------------NLSLDL 184

Query: 385 SDNFLTDVEQVPLK--NLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTA 442
           S N +  ++    K   L  L LR+N    +V     +     ++  ++   +   F   
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV----MKTCIQGLAGLEVHRLVLGEF--- 237

Query: 443 APIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLI---LN 499
                   +  +L       L     L   +  L   +  +  I    + L N+    L 
Sbjct: 238 -------RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 500 DNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTD 559
               E       +     Q L + N +          +L  L  L   SNK     GN  
Sbjct: 291 SVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNK----GGNAF 341

Query: 560 ARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTL 619
           + V  P L  LDLSRN  +       F+   +      TS                    
Sbjct: 342 SEVDLPSLEFLDLSRNGLS-------FKGCCSQSDFGTTSL------------------- 375

Query: 620 KGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSS-LRNLT 678
                          +D S N     +      L  L+ L+F H++L      S   +L 
Sbjct: 376 -------------KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 679 VLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQG 721
            L  LD+S              L+ L  L ++ N  +      
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.0 bits (208), Expect = 5e-17
 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           LDLS + L      + S F    L+ L+L  N   +  +SS F  L  L HL+  +S   
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLK 409

Query: 69  GQIPSEI-SQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYS 127
                 +   L  ++ LD+S           + G+   L+ L+ L ++        L   
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHT---HTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 128 LTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187
            T L + L++L L+ C L    P +  +L  L  L+++ N            L  L  + 
Sbjct: 466 FTELRN-LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

Query: 188 LEQNNLVGGIPD 199
           L  N      P 
Sbjct: 525 LHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
           V+D S    +         L+ L  L  + N +      +   L+ L+ L      L   
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQS 729
               +  L  L +LN++HN ++        F+   +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTN 150

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  196 bits (500), Expect = 1e-52
 Identities = 122/639 (19%), Positives = 217/639 (33%), Gaps = 95/639 (14%)

Query: 123 VLDYSLTNLSS------SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHI-PS 175
           +  Y   NL+       +   L L+   +     +S   L QL  L L   +    I   
Sbjct: 8   IAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRL--PSCLKGLRNLVT 233
              +L  L  L+L  + +    PD+F  L  L  L L +  L+  +      + L+ L  
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 234 LRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE---LVNLTSIRLSSNNL 290
           L LS N +        F  L  L+ I    N+    +     E      L+   L++N+L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSL 186

Query: 291 SGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDF-LRS 349
              + +     +   + + L    +S N           +   G  +  IS+   F L  
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGN--------GWTVDITGNFSNAISKSQAFSLIL 238

Query: 350 QDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNL 409
              +       + I     N F  + + ++ +L+LS  F+  +     + L         
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL--------- 289

Query: 410 LQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITL 469
                      L   +++ NK+      +F     ++ ++LS N L             +
Sbjct: 290 ---------KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

Query: 470 IWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDD 529
            ++DL  N       Q       L  L L DN        ++     +  + ++ N++  
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVT 395

Query: 530 TFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNL 589
                L       ++ L  N+   L       +  P L+IL L++N F+     +     
Sbjct: 396 LPKINLT----ANLIHLSENRLENL-DILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 590 KAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEV 649
                                       +L+ + +  N+L +    +   + FEG     
Sbjct: 451 P---------------------------SLEQLFLGENMLQLAWETELCWDVFEG----- 478

Query: 650 VGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNF---LSK 706
              L+ L++L  +HN+L    P    +LT L  L L+SNRL     T L+  +    L  
Sbjct: 479 ---LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL-----TVLSHNDLPANLEI 530

Query: 707 LNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSD 745
           L++S NQL  P P    F +        N  +C   LS 
Sbjct: 531 LDISRNQLLAPNPD--VFVSLSVLDITHNKFICECELST 567

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  192 bits (490), Expect = 2e-51
 Identities = 124/606 (20%), Positives = 197/606 (32%), Gaps = 93/606 (15%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI-SQ 77
            +P       L   E L L  N    ++ +S F  L  L  L L + Y    I  E    
Sbjct: 18  QVPQV-----LNTTERLLLSFNYI-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN 71

Query: 78  LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSY 137
           L  +  LDL  +    +         + L  L EL L    +S  VL         +L+ 
Sbjct: 72  LPNLRILDLGSSKIYFLHP----DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 138 LHLTGCNLIG-PIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQ--LYYLNLEQNNLV 194
           L L+   +    +  S   L  L S+  S N         L  L+   L + +L  N+L 
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 195 GGIPDSFVNLTQ------LSFLDLSWNQLTGRLPSC------------LKGLRNLVTLRL 236
             +   +           L  LD+S N  T  +               L    +++    
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 237 SGNSLNGTIPSWLFTVLP--YLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGH 293
             +++        F  L    +  + L       S+ S +FE L +L  + L+ N ++  
Sbjct: 248 GFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKIN-K 304

Query: 294 IELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRL 353
           I    F  L NLQ L LS N L                           +        ++
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLG------------------------ELYSSNFYGLPKV 340

Query: 354 EWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGS 413
            ++ L +N I       F  + K  L  L+L DN LT +  +P  ++  + L  N L  +
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEK--LQTLDLRDNALTTIHFIP--SIPDIFLSGNKLV-T 395

Query: 414 VMVLPPRLIFFSISNNKLTGEIPCSFCTAAP-IEFIDLSNNSLSGPIPECLVDSIT-LIW 471
           +  +        +S N+L       F    P ++ + L+ N  S    +        L  
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 472 LDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTF 531
           L L  N                    L                S LQVL + +N ++   
Sbjct: 456 LFLGENM-------------------LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496

Query: 532 PHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKA 591
           P   + L  L  L L SN+   L        +   L ILD+SRN+         F +L  
Sbjct: 497 PGVFSHLTALRGLSLNSNRLTVL----SHNDLPANLEILDISRNQLL-APNPDVFVSLSV 551

Query: 592 MMRGSN 597
           +    N
Sbjct: 552 LDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  178 bits (452), Expect = 1e-46
 Identities = 134/732 (18%), Positives = 243/732 (33%), Gaps = 114/732 (15%)

Query: 104 ENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPI-PASLANLPQLTSL 162
           + L   + L+LS   + T+    S   L   L  L L        I   +  NLP L  L
Sbjct: 21  QVLNTTERLLLSFNYIRTV-TASSFPFLEQ-LQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 163 SLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRL- 221
            L  +     +                        PD+F  L  L  L L +  L+  + 
Sbjct: 79  DLGSSKIY-FLH-----------------------PDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 222 -PSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE---L 277
                + L+ L  L LS N +        F  L  L+ I    N+    +     E    
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQG 173

Query: 278 VNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSA 337
             L+   L++N+L   + +     +   + + L    +S N           +   G  +
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN--------GWTVDITGNFS 225

Query: 338 CNISEFPDF-LRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ-- 394
             IS+   F L     +       + I     N F  + + ++ +L+LS  F+  +    
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 395 -VPLKNLRFLDLRSNL---LQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL 450
              LK+L+ L+L  N    +          L   ++S N L      +F     + +IDL
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 451 SNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQS 510
             N ++    +       L  LDL  N+   +I  I +    + ++ L+ N+       +
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPS----IPDIFLSGNKLVTLPKIN 400

Query: 511 LANCSRLQVLNVANNRIDDTFPHW-LAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRI 569
           L       +++++ NR+++    + L ++P L +LIL  N+F    G+       P L  
Sbjct: 401 L----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE-NPSLEQ 455

Query: 570 LDLSRNEFTGV----LPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVE 625
           L L  N         L    F+ L  +                                 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQ-------------------------------- 483

Query: 626 MNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDL 685
                   V+  + N      P V   L  L+ L+ + N LT    + L     LE LD+
Sbjct: 484 --------VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDI 533

Query: 686 SSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGL-----CG 740
           S N+L+   P    S   LS L+++HN+          F  + + + +   G      C 
Sbjct: 534 SRNQLLAPNPDVFVS---LSVLDITHNKFICECELST-FINWLNHTNVTIAGPPADIYCV 589

Query: 741 FPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMMGYASGLVIGFSIGYMAFATGRPRWLVRM 800
           +P S    ++         +       K ++    +  +  F +  +     R    +  
Sbjct: 590 YPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

Query: 801 VERKRIRRQSTR 812
              +R+  +   
Sbjct: 650 KTAQRLVFKDHP 661

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (441), Expect = 3e-45
 Identities = 113/473 (23%), Positives = 169/473 (35%), Gaps = 39/473 (8%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           L L    L  ++  +     L  L  L+L  N   S  +   FG+L SL  ++ S++   
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 69  GQIPSEISQLSKM--LSLDLSKNDEVRIESPVWKGLIENL--TKLKELVLSEVDMSTIVL 124
                E+  L         L+ N      S  W   +       L+ L +S    +  + 
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 125 DYSLTNLSSS----------LSYLHLTGCNLIGPIPASLANLPQ--LTSLSLSYNHFSGH 172
                 +S S          +        N+  P   + A L +  +  L LS+      
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281

Query: 173 IPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLV 232
                  LK L  LNL  N +     ++F  L  L  L+LS+N L     S   GL  + 
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341

Query: 233 TLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSG 292
            + L  N +   I    F  L  L+ + LRDN  T     TI  + ++  I LS N L  
Sbjct: 342 YIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVT 395

Query: 293 HIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPD--FLRSQ 350
             ++ +         ++LS+NRL     L      P L  L L+    S           
Sbjct: 396 LPKINLT-----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 351 DRLEWLQLSENKIYGRIPNWF-WDIGKD--TLYNLNLSDNFLTDVEQ---VPLKNLRFLD 404
             LE L L EN +         WD+ +    L  L L+ N+L  +       L  LR L 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 405 LRSNLLQG-SVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS 456
           L SN L   S   LP  L    IS N+L    P  F     +  +D+++N   
Sbjct: 511 LNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  177 bits (451), Expect = 2e-48
 Identities = 108/496 (21%), Positives = 185/496 (37%), Gaps = 47/496 (9%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
            I    +   L       LG  +   +        L  +T L              +  L
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDT---VSQTDLDQVTTLQADRLGIK--SIDGVEYL 67

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
           + +  ++ S N    I        ++NLTKL +++++   ++ I     L NL++ L+ L
Sbjct: 68  NNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADIT---PLANLTN-LTGL 117

Query: 139 HLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIP 198
            L    +    P  L NL  L  L LS N  S    S LS L  L  L+   N +    P
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP 172

Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
               NLT L  LD+S N+++    S L  L NL +L  + N ++   P     +L  L+ 
Sbjct: 173 --LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP---LGILTNLDE 225

Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           + L  N+       T+  L NLT + L++N +S    L     L  L  L L  N++   
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQI--- 277

Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT 378
           + +   +    L  L L+   + +    + +   L +L L  N I    P     +   T
Sbjct: 278 SNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-----VSSLT 331

Query: 379 -LYNLNLSDNFLTDVEQV-PLKNLRFLDLRSNLLQG-SVMVLPPRLIFFSISNNKLTGEI 435
            L  L   +N ++DV  +  L N+ +L    N +   + +    R+    +++   T   
Sbjct: 332 KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAP 391

Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
                  +    +     +L  P    + D  +    D+  N  +    ++S   S  V 
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPAT--ISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVT 448

Query: 496 LILNDNQFEGPLPQSL 511
           +      F G + Q L
Sbjct: 449 IGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  157 bits (398), Expect = 3e-41
 Identities = 105/589 (17%), Positives = 185/589 (31%), Gaps = 130/589 (22%)

Query: 134 SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNL 193
            L    +T    I  I  +   L +     L   + +  +    + L Q+  L  ++  +
Sbjct: 2   PLGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 194 VGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVL 253
                D    L  L+ ++ S NQLT    + LK L  LV + ++ N +    P      L
Sbjct: 59  --KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP---LANL 111

Query: 254 PYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
             L  + L +N+ T   P  +  L NL  + LSSN +S    L   + L +LQ L     
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL---SGLTSLQQLSFGNQ 166

Query: 314 RLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWD 373
                T L   +    L +L +S+  +S+    L     LE L  + N+I    P     
Sbjct: 167 V----TDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP----- 216

Query: 374 IGK-DTLYNLNLSDNFLTDVEQV-PLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKL 431
           +G    L  L+L+ N L D+  +  L NL  LDL                     +NN++
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL---------------------ANNQI 255

Query: 432 TGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS 491
           +   P S  T   +  + L  N +S   P  L     L  L+L+ N      P       
Sbjct: 256 SNLAPLSGLTK--LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP------- 304

Query: 492 GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
                              ++N   L  L +  N I D  P  ++ L +L  L   +NK 
Sbjct: 305 -------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

Query: 552 YGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGR 611
             +    +       +  L    N+ + + P      +                      
Sbjct: 344 SDVSSLAN----LTNINWLSAGHNQISDLTPLANLTRIT--------------------- 378

Query: 612 YYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIP 671
                                  +  +   +          +++   +      L    P
Sbjct: 379 ----------------------QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--AP 414

Query: 672 SSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ 720
           +++ +       D++ N           + +    +        G + Q
Sbjct: 415 ATISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  119 bits (301), Expect = 1e-28
 Identities = 73/327 (22%), Positives = 131/327 (40%), Gaps = 31/327 (9%)

Query: 15  WLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSE 74
                +     L  L  LE L++ SN  +     S   +L +L  L  +N+  S   P  
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP-- 216

Query: 75  ISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSS 134
           +  L+ +  L L+ N   +++     G + +LT L +L L+   +S +     L+ L + 
Sbjct: 217 LGILTNLDELSLNGN---QLKDI---GTLASLTNLTDLDLANNQISNLA---PLSGL-TK 266

Query: 135 LSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLV 194
           L+ L L    +    P  LA L  LT+L L+ N       S +S+LK L YL L  NN+ 
Sbjct: 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 322

Query: 195 GGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP 254
              P    +LT+L  L    N+++    S L  L N+  L    N ++   P      L 
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP---LANLT 375

Query: 255 YLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNR 314
            +  + L D  +T +  +    +    +++  +  L     +       +     ++ N 
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS---DGGSYTEPDITWNL 432

Query: 315 LSVNTKLDANSTFPKLLKLGLSACNIS 341
            S   ++  + TF + + +G      S
Sbjct: 433 PSYTNEV--SYTFSQPVTIGKGTTTFS 457

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 55/273 (20%), Positives = 98/273 (35%), Gaps = 62/273 (22%)

Query: 449 DLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLP 508
            L   +++  + +  +D +T   L         SI  +    + L  +  ++NQ     P
Sbjct: 30  VLGKTNVTDTVSQTDLDQVT--TLQADRLGIK-SIDGVE-YLNNLTQINFSNNQLTDITP 85

Query: 509 QSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLR 568
             L N ++L  + + NN+I D  P  LA L  L  L L +N+   +    +       L 
Sbjct: 86  --LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKN----LTNLN 137

Query: 569 ILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNI 628
            L+LS N  + +        L +                           L+ +     +
Sbjct: 138 RLELSSNTISDISA---LSGLTS---------------------------LQQLSFGNQV 167

Query: 629 LSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSN 688
             +                + +  L  L+ L+ S N ++    S L  LT LESL  ++N
Sbjct: 168 TDL----------------KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 209

Query: 689 RLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQG 721
           ++    P  L  L  L +L+L+ NQL+      
Sbjct: 210 QISDITP--LGILTNLDELSLNGNQLKDIGTLA 240

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 5e-09
 Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 55/198 (27%)

Query: 524 NNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPT 583
           +  I+  F      L E +  +L        +  TD      ++  L   R     +   
Sbjct: 11  DTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQTD----LDQVTTLQADRLGIKSIDGV 64

Query: 584 RYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFE 643
            Y  NL                                             I+FS+N+  
Sbjct: 65  EYLNNLT-------------------------------------------QINFSNNQLT 81

Query: 644 GQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNF 703
              P  +  L  L  +  ++N +    P  L NLT L  L L +N++    P  L +L  
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTN 135

Query: 704 LSKLNLSHNQLEGPIPQG 721
           L++L LS N +       
Sbjct: 136 LNRLELSSNTISDISALS 153

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  170 bits (433), Expect = 2e-45
 Identities = 102/488 (20%), Positives = 179/488 (36%), Gaps = 34/488 (6%)

Query: 22  SNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKM 81
            +  L     L+ L L S+   +++    F  L SL HL+LS+++ S    S    LS +
Sbjct: 42  GHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100

Query: 82  LSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLT 141
             L+L  N    +       L  NLT L+ L +  V+  + +       L+S L+ L + 
Sbjct: 101 KYLNLMGNPYQTLGVT---SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-LNELEIK 156

Query: 142 GCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSF 201
             +L      SL ++  +  L+L  +  +  +  F   L  + YL L   NL        
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 202 VNLTQLSFLDLSWNQLT-------GRLPSCLKGLRNLVTLRLSGNSLNG----------T 244
                 S +     + +         L   L+ +  L  +     +LNG           
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKN 304
           +          +  +H+        + +    L  +  I + ++ +   +       LK+
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS 335

Query: 305 LQYLYLSQNRLS--VNTKLDANSTFPKLLKLGLSACNISEFP---DFLRSQDRLEWLQLS 359
           L++L LS+N +             +P L  L LS  ++       + L +   L  L +S
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 360 ENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPP 419
            N     +P+      K  +  LNLS   +  V+    + L  LD+ +N L  S  +  P
Sbjct: 396 RNTF-HPMPDSCQWPEK--MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLP 451

Query: 420 RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSF 479
           RL    IS NKL      S      +  + +S N L            +L  + LH N +
Sbjct: 452 RLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

Query: 480 NGSIPQIS 487
           + S P+I 
Sbjct: 510 DCSCPRID 517

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  170 bits (433), Expect = 2e-45
 Identities = 93/523 (17%), Positives = 180/523 (34%), Gaps = 65/523 (12%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
           ++  L+LS +  +     ++   + +  L L  +    IE         +L  L+ L LS
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSLEHLDLS 82

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIG-PIPASLANLPQLTSLSLSYNHFSGHIP 174
           +  +S++        L SSL YL+L G       + +   NL  L +L +        I 
Sbjct: 83  DNHLSSL-SSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 175 -SFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVT 233
               + L  L  L ++  +L      S  ++  +  L L  ++    L      L ++  
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 234 LRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNR-----------------FTGSIPSTIFE 276
           L L   +L          V      +     R                 +   +    F+
Sbjct: 201 LELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 277 LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLS 336
              L  +   + + S  +          ++ L++ Q  L  +      S   K+ ++ + 
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVE 318

Query: 337 ACNISEFP-DFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK-DTLYNLNLSDNFLTDVEQ 394
              +   P  F +    LE+L LSEN +           G   +L  L LS N L  +++
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 395 VP-----LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFID 449
                  LKNL  LD+  N                          +P S      + F++
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH----------------------PMPDSCQWPEKMRFLN 416

Query: 450 LSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQ 509
           LS+  +   +  C+  ++    LD+  N    ++   S     L  L ++ N+ +  LP 
Sbjct: 417 LSSTGIRV-VKTCIPQTLE--VLDVSNN----NLDSFSLFLPRLQELYISRNKLKT-LPD 468

Query: 510 SLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFY 552
           + +    L V+ ++ N++         +L  L  + L +N + 
Sbjct: 469 A-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  166 bits (423), Expect = 5e-44
 Identities = 89/492 (18%), Positives = 172/492 (34%), Gaps = 46/492 (9%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
           + L++++  L L+   +       L     L  L L  +  +         L  L +L+L
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG-RLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
             N+L       F  L+ L +L+L  N      + S    L NL TLR+        I  
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 248 WLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY 307
             F  L  L  + ++          ++  + ++  + L  +  +  +       L +++Y
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY 200

Query: 308 LYLSQNRLSVNTKLDANS----------TFPKLLKLGLSACNISEFPDFLRSQDRLEWLQ 357
           L L    L+                    F   +    S   + +   ++     +E+  
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 358 LSENKIYGRIPNWFWDIGKD------TLYNLNLSDNFLTDVEQV---PLKNLRFLDLRSN 408
            + N +    P+    + +       T+  L++   +L          L+ ++ + + ++
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 409 LLQ---GSVMVLPPRLIFFSISNNKLTGEIPCS---FCTAAPIEFIDLSNNSLS--GPIP 460
            +     S       L F  +S N +  E   +         ++ + LS N L       
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 461 ECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANC--SRLQ 518
           E L+    L  LD+  N+F+  +P        +  L L+         + +  C    L+
Sbjct: 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-----RVVKTCIPQTLE 434

Query: 519 VLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFT 578
           VL+V+NN +D         LP L  L +  NK   L        +FP L ++ +SRN+  
Sbjct: 435 VLDVSNNNLDSFSLF----LPRLQELYISRNKLKTL----PDASLFPVLLVMKISRNQLK 486

Query: 579 GVLPTRYFQNLK 590
             +P   F  L 
Sbjct: 487 -SVPDGIFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  163 bits (415), Expect = 5e-43
 Identities = 97/565 (17%), Positives = 179/565 (31%), Gaps = 72/565 (12%)

Query: 134 SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNL 193
                  T       IP+ L     + SL LS+N  +      L     L  L L+ + +
Sbjct: 11  DGRSRSFTS------IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 194 VGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVL 253
                D+F +L  L  LDLS N L+    S    L +L  L L GN       + LF  L
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 254 PYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
             L+ + + +      I    F  L +L  + + + +L  + +      ++++ +L L  
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHL 181

Query: 313 NRLSVNTKLDANSTFPKLLKLGLSACNISEFPDF-LRSQDRLEWLQLSENKIYGRIPNWF 371
           +  +             +  L L   N++ F    L   +    ++    +        F
Sbjct: 182 SESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 372 WDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKL 431
            ++ K   Y L LS+    D     L +    +  S+++     V    +    I    L
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSE--SDVVSELGKVETVTIRRLHIPQFYL 298

Query: 432 TGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS 491
             ++   +     ++ I + N+ +            +L +LDL  N       + SA   
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 492 GLVNL---ILNDNQFE--GPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLIL 546
              +L   +L+ N         + L     L  L+++ N      P       ++  L L
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 547 RSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYM 606
            S              I   L +LD+S N       + +   L+                
Sbjct: 418 SSTGI-----RVVKTCIPQTLEVLDVSNNNLDSF--SLFLPRLQ---------------- 454

Query: 607 HRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHL 666
                                       +  S N+ +  +P+      +L ++  S N L
Sbjct: 455 ---------------------------ELYISRNKLK-TLPDAS-LFPVLLVMKISRNQL 485

Query: 667 TGRIPSSLRNLTVLESLDLSSNRLV 691
                     LT L+ + L +N   
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  163 bits (415), Expect = 5e-43
 Identities = 89/575 (15%), Positives = 184/575 (32%), Gaps = 83/575 (14%)

Query: 155 NLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSW 214
           +             F+  IPS L+    +  L+L  N +             L  L L  
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 215 NQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTI 274
           +++          L +L  L LS N L+ ++ S  F  L  L+ ++L  N +     +++
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 275 FE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANS--TFPKLL 331
           F  L NL ++R+ +      I    FA L +L  L +    L       + S  +   + 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL---RNYQSQSLKSIRDIH 175

Query: 332 KLGLSACNISEFPDFLRSQ-DRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLT 390
            L L     +   +        + +L+L +  +     +                D   +
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL------------PVDEVSS 223

Query: 391 DVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL 450
            ++++  +     D   N L   ++     L      +  L G               D 
Sbjct: 224 PMKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDDCTLNG-------------LGDF 269

Query: 451 SNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQS 510
           + +          V+++T+  L +        +  + +    +  + + +++        
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329

Query: 511 LANCSRLQVLNVANNRIDDTFPHW---LAQLPELLVLILRSNKFYGLIGNTDARVIFPKL 567
             +   L+ L+++ N + + +          P L  L+L  N    +    +  +    L
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 568 RILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMN 627
             LD+SRN F  +  +   Q  +                            ++ +++   
Sbjct: 390 TSLDISRNTFHPMPDS--CQWPE---------------------------KMRFLNLSST 420

Query: 628 ILSIFL--------VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTV 679
            + +          V+D S+N     +      L  L+ L  S N L   +P +     V
Sbjct: 421 GIRVVKTCIPQTLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK-TLPDAS-LFPV 474

Query: 680 LESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714
           L  + +S N+L          L  L K+ L  N  
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (252), Expect = 3e-22
 Identities = 57/350 (16%), Positives = 112/350 (32%), Gaps = 14/350 (4%)

Query: 378 TLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQ---GSVMVLPPRLIFFSISNNKL 431
            + +L+LS N +T +         NL+ L L+S+ +    G        L    +S+N L
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 432 TGEIPCSFCTAAPIEFIDLSNNSLSG-PIPECLVDSITLIWLDLHLNSFNGSIPQISANG 490
           +      F   + +++++L  N      +     +   L  L +        I +I   G
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 491 -SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSN 549
            + L  L +          QSL +   +  L +  +        +   L  +  L LR  
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 550 KFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRF 609
                        +      +       + +    + + LK +      S V+       
Sbjct: 207 NLARF--QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 610 GRYYSAFFTLKGIDVEMNILSIFL-VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG 668
           G           +     + ++ +  +          +  V   L  +K +   ++ +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 669 RIPSSLRNLTVLESLDLSSNRLVGQIPTQ---LTSLNFLSKLNLSHNQLE 715
              S  ++L  LE LDLS N +V +         +   L  L LS N L 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 42/227 (18%), Positives = 71/227 (31%), Gaps = 43/227 (18%)

Query: 491 SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNK 550
           + + +L L+ N+        L  C+ LQVL + ++RI+         L  L  L L  N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 551 FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFG 610
              L  ++        L+ L+L  N +  +  T  F NL                     
Sbjct: 86  LSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-------------------- 123

Query: 611 RYYSAFFTLKGIDV-EMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGR 669
                   L+ + +  +   S    IDF+              L  L  L      L   
Sbjct: 124 -------NLQTLRIGNVETFSEIRRIDFA-------------GLTSLNELEIKALSLRNY 163

Query: 670 IPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEG 716
              SL+++  +  L L  +     +      L+ +  L L    L  
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  164 bits (418), Expect = 5e-45
 Identities = 79/381 (20%), Positives = 153/381 (40%), Gaps = 37/381 (9%)

Query: 32  LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDE 91
             TL       N          L       L  +  +        +L  +  L ++    
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV 56

Query: 92  VRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPA 151
             I+       IE LT L+ L L+   ++ I     L+NL   L+ L++    +     +
Sbjct: 57  ASIQG------IEYLTNLEYLNLNGNQITDIS---PLSNL-VKLTNLYIGTNKIT--DIS 104

Query: 152 SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLD 211
           +L NL  L  L L+ ++ S    S L++L ++Y LNL  N+ +        N+T L++L 
Sbjct: 105 ALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLT 161

Query: 212 LSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIP 271
           ++ +++     + +  L +L +L L+ N +    P      L  L       N+ T   P
Sbjct: 162 VTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP 216

Query: 272 STIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLL 331
             +  +  L S+++ +N ++    L   A L  L +L +  N++   + ++A     KL 
Sbjct: 217 --VANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQI---SDINAVKDLTKLK 268

Query: 332 KLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTD 391
            L + +  IS+      +  +L  L L+ N++          +    L  L LS N +TD
Sbjct: 269 MLNVGSNQISDISVL-NNLSQLNSLFLNNNQLGNEDMEVIGGLTN--LTTLFLSQNHITD 325

Query: 392 VEQV-PLKNLRFLDLRSNLLQ 411
           +  +  L  +   D  + +++
Sbjct: 326 IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  149 bits (378), Expect = 1e-39
 Identities = 79/359 (22%), Positives = 152/359 (42%), Gaps = 36/359 (10%)

Query: 5   QVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSN 64
           + I   L       S+    +   L  +  L +      S     G   L +L +LNL+ 
Sbjct: 23  EGIRAVLQ----KASVTDVVTQEELESITKLVVAGEKVASI---QGIEYLTNLEYLNLNG 75

Query: 65  SYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVL 124
           +  +   P  +S L K+ +L +  N    I +      ++NLT L+EL L+E ++S I  
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKITDISA------LQNLTNLRELYLNEDNISDI-- 125

Query: 125 DYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLY 184
              L NL + +  L+L   + +    + L+N+  L  L+++ +      P  +++L  LY
Sbjct: 126 -SPLANL-TKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT 244
            L+L  N +    P    +LT L +     NQ+T    + +  +  L +L++  N +   
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDL 236

Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKN 304
            P      L  L  + +  N+ +    + + +L  L  + + SN +S   ++ +   L  
Sbjct: 237 SP---LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS---DISVLNNLSQ 288

Query: 305 LQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKI 363
           L  L+L+ N+L  N  ++       L  L LS  +I++    L S  +++    +   I
Sbjct: 289 LNSLFLNNNQLG-NEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (371), Expect = 9e-39
 Identities = 80/378 (21%), Positives = 150/378 (39%), Gaps = 39/378 (10%)

Query: 83  SLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTG 142
           +L        +I          +L +    VL +  ++ +V    L +++     L + G
Sbjct: 4   TLATLPAPINQIFP------DADLAEGIRAVLQKASVTDVVTQEELESITK----LVVAG 53

Query: 143 CNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFV 202
              +  I   +  L  L  L+L+ N  +   P  LS+L +L  L +  N +      +  
Sbjct: 54  -EKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQ 107

Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
           NLT L  L L+ + ++    S L  L  + +L L  N     +     + +  L  + + 
Sbjct: 108 NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVT 163

Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
           +++     P  I  L +L S+ L+ N +     L   A L +L Y     N++   T + 
Sbjct: 164 ESKVKDVTP--IANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQI---TDIT 215

Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNL 382
             +   +L  L +    I++    L +  +L WL++  N+I   I     D+ K  L  L
Sbjct: 216 PVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQI-SDINA-VKDLTK--LKML 270

Query: 383 NLSDNFLTDVEQV-PLKNLRFLDLRSNLLQG---SVMVLPPRLIFFSISNNKLTGEIPCS 438
           N+  N ++D+  +  L  L  L L +N L      V+     L    +S N +T   P +
Sbjct: 271 NVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA 330

Query: 439 FCTAAPIEFIDLSNNSLS 456
             +   ++  D +N  + 
Sbjct: 331 SLSK--MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (365), Expect = 6e-38
 Identities = 71/308 (23%), Positives = 127/308 (41%), Gaps = 32/308 (10%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           L+L+ + +    P    L  L  L  L +G+N        S    L +L  L L+    S
Sbjct: 71  LNLNGNQITDISP----LSNLVKLTNLYIGTNKITDI---SALQNLTNLRELYLNEDNIS 123

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSL 128
               S ++ L+KM SL+L  N  +   SP     + N+T L  L ++E  +  +     +
Sbjct: 124 D--ISPLANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKDVT---PI 173

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
            NL+  L  L L    +    P  LA+L  L   +   N  +   P  ++++ +L  L +
Sbjct: 174 ANLTD-LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI 228

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW 248
             N +         NL+QL++L++  NQ++    + +K L  L  L +  N ++      
Sbjct: 229 GNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV-- 282

Query: 249 LFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL 308
               L  L  + L +N+        I  L NLT++ LS N+++    +   A L  +   
Sbjct: 283 -LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD---IRPLASLSKMDSA 338

Query: 309 YLSQNRLS 316
             +   + 
Sbjct: 339 DFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (347), Expect = 2e-35
 Identities = 76/423 (17%), Positives = 142/423 (33%), Gaps = 81/423 (19%)

Query: 159 LTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLT 218
             +L+      +   P   + L +     L++ ++   +      L  ++ L ++  ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 219 GRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELV 278
                 ++ L NL  L L+GN +    P    + L  L  +++  N+ T    S +  L 
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 279 NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSAC 338
           NL  + L+ +N+S    +   A L  +  L L  N     + L   S    L  L ++  
Sbjct: 111 NLRELYLNEDNISD---ISPLANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTES 165

Query: 339 NISEFPDF--LRSQDRLEWLQLSENKIYGRIPNWFWDIGK-DTLYNLNLSDNFLTDVEQV 395
            + +      L     L  L L+ N+I    P     +    +L+      N +TD+   
Sbjct: 166 KVKDVTPIANLTD---LYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQITDIT-- 215

Query: 396 PLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSL 455
           P+ N+                   RL    I NNK+T   P +  +   + ++++  N +
Sbjct: 216 PVANM------------------TRLNSLKIGNNKITDLSPLANLSQ--LTWLEIGTNQI 255

Query: 456 SGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCS 515
           S                          I  +      L  L +  NQ        L N S
Sbjct: 256 S-------------------------DINAVKDLTK-LKMLNVGSNQISDI--SVLNNLS 287

Query: 516 RLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRN 575
           +L  L + NN++ +     +  L  L  L L  N    +           K+   D +  
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS----LSKMDSADFANQ 343

Query: 576 EFT 578
              
Sbjct: 344 VIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (286), Expect = 2e-27
 Identities = 85/489 (17%), Positives = 157/489 (32%), Gaps = 147/489 (30%)

Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
              L+ L    NQ+          L   +   L   S+   +       L  +  + +  
Sbjct: 2   AATLATLPAPINQIFP-----DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAG 53

Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDA 323
            +   SI   I  L NL  + L+ N ++    L   + L  L  LY+  N++   T + A
Sbjct: 54  EKVA-SIQG-IEYLTNLEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKI---TDISA 105

Query: 324 NSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYNL 382
                 L +L L+  NIS+    L +  ++  L L  N     +      +   T L  L
Sbjct: 106 LQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYL 160

Query: 383 NLSDNFLTDVEQV-PLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCT 441
            ++++ + DV  +  L +L  L L                     + N++    P +  T
Sbjct: 161 TVTESKVKDVTPIANLTDLYSLSL---------------------NYNQIEDISPLASLT 199

Query: 442 AAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDN 501
           +  + +     N ++   P                                         
Sbjct: 200 S--LHYFTAYVNQITDITP----------------------------------------- 216

Query: 502 QFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDAR 561
                    +AN +RL  L + NN+I D  P  LA L +L  L + +N+   +    D  
Sbjct: 217 ---------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKD-- 263

Query: 562 VIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
               KL++L++  N+ + +        L                                
Sbjct: 264 --LTKLKMLNVGSNQISDISVLNNLSQLN------------------------------- 290

Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLE 681
                        +  ++N+   +  EV+G L  L  L  S NH+T      L +L+ ++
Sbjct: 291 ------------SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMD 336

Query: 682 SLDLSSNRL 690
           S D ++  +
Sbjct: 337 SADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (278), Expect = 2e-26
 Identities = 78/438 (17%), Positives = 150/438 (34%), Gaps = 95/438 (21%)

Query: 280 LTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACN 339
             ++      ++   ++   A L       L +  +   T +        + KL ++   
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASV---TDVVTQEELESITKLVVAGEK 55

Query: 340 ISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYNLNLSDNFLTDVEQVP-L 397
           ++     +     LE+L L+ N+I    P     +     L NL +  N +TD+  +  L
Sbjct: 56  VASIQG-IEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDISALQNL 109

Query: 398 KNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSG 457
            NLR L L                     + + ++   P +  T   +  ++L  N    
Sbjct: 110 TNLRELYL---------------------NEDNISDISPLANLTK--MYSLNLGANHNLS 146

Query: 458 PIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRL 517
            +   L +   L +L +  +     +  I+     L +L LN NQ E   P  LA+ + L
Sbjct: 147 DLSP-LSNMTGLNYLTVTESKVK-DVTPIANLTD-LYSLSLNYNQIEDISP--LASLTSL 201

Query: 518 QVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEF 577
                  N+I D  P  +A +  L  L + +NK   L    +      +L  L++  N+ 
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLAN----LSQLTWLEIGTNQI 255

Query: 578 TGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDF 637
           + +   +    LK                                           +++ 
Sbjct: 256 SDINAVKDLTKLK-------------------------------------------MLNV 272

Query: 638 SSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQ 697
            SN+       V+  L+ L  L  ++N L       +  LT L +L LS N +    P  
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328

Query: 698 LTSLNFLSKLNLSHNQLE 715
           L SL+ +   + ++  ++
Sbjct: 329 LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (277), Expect = 2e-26
 Identities = 74/366 (20%), Positives = 132/366 (36%), Gaps = 44/366 (12%)

Query: 356 LQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVE-QVPLKNLRFLDLRSNLLQG-S 413
           L      I       F D          L    +TDV  Q  L+++  L +    +    
Sbjct: 5   LATLPAPI----NQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60

Query: 414 VMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLD 473
            +     L + +++ N++T   P S      +  + +  N ++      L +   L  L 
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISPLSNLVK--LTNLYIGTNKIT--DISALQNLTNLRELY 116

Query: 474 LHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPH 533
           L+ ++ +   P   AN + + +L L  N         L+N + L  L V  +++ D  P 
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP- 172

Query: 534 WLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMM 593
            +A L +L  L L  N+   +            L       N+ T + P      L ++ 
Sbjct: 173 -IANLTDLYSLSLNYNQIEDISPLAS----LTSLHYFTAYVNQITDITPVANMTRLNSLK 227

Query: 594 RGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKL 653
            G+N                     +  +    N+  +   ++  +N+        V  L
Sbjct: 228 IGNNK--------------------ITDLSPLANLSQLT-WLEIGTNQISD--INAVKDL 264

Query: 654 NLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQ 713
             LKMLN   N ++    S L NL+ L SL L++N+L  +    +  L  L+ L LS N 
Sbjct: 265 TKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

Query: 714 LEGPIP 719
           +    P
Sbjct: 323 ITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 53/340 (15%), Positives = 101/340 (29%), Gaps = 84/340 (24%)

Query: 379 LYNLNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPC 437
              L      +  +     L       L                         +T  +  
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVL---------------------QKASVTDVVTQ 40

Query: 438 SFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLI 497
               +  I  + ++   ++      +     L +L+L+ N      P   +N   L NL 
Sbjct: 41  EELES--ITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLY 94

Query: 498 LNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGN 557
           +  N+       +L N + L+ L +  + I D  P  LA L ++  L L +N     +  
Sbjct: 95  IGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150

Query: 558 TDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFF 617
                    L  L ++ ++   V P     +L                            
Sbjct: 151 LSN---MTGLNYLTVTESKVKDVTPIANLTDLY--------------------------- 180

Query: 618 TLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNL 677
                            +  + N+ E   P  +  L  L       N +T    + + N+
Sbjct: 181 ----------------SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANM 220

Query: 678 TVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGP 717
           T L SL + +N++    P  L +L+ L+ L +  NQ+   
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 8e-13
 Identities = 42/228 (18%), Positives = 76/228 (33%), Gaps = 34/228 (14%)

Query: 492 GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
           G   L           P   A+ +      +    + D       +L  +  L++   K 
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK- 55

Query: 552 YGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGR 611
              + +         L  L+L+ N+ T + P      L  +  G+N  T           
Sbjct: 56  ---VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD---------- 102

Query: 612 YYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIP 671
             SA   L  +            +  + +      P  +  L  +  LN   NH      
Sbjct: 103 -ISALQNLTNLR----------ELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DL 148

Query: 672 SSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIP 719
           S L N+T L  L ++ +++    P  + +L  L  L+L++NQ+E   P
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  163 bits (414), Expect = 2e-43
 Identities = 80/311 (25%), Positives = 120/311 (38%), Gaps = 14/311 (4%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
             + +    L L    +        A+ P L  L L+ N  S   P   ++L  L  L L
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW 248
             N L       F  L+ L+ LD+S N++   L    + L NL +L +  N L   I   
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146

Query: 249 LFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQY 307
            F+ L  LE + L     T SIP+     L  L  +RL   N++  I    F RL  L+ 
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKV 204

Query: 308 LYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDF-LRSQDRLEWLQLSENKIYGR 366
           L +S          +       L  L ++ CN++  P   +R    L +L LS N I   
Sbjct: 205 LEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 367 IPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLL---QGSVMVLPPR 420
             +   ++ +  L  + L    L  VE      L  LR L++  N L   + SV      
Sbjct: 264 EGSMLHELLR--LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 421 LIFFSISNNKL 431
           L    + +N L
Sbjct: 322 LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  152 bits (385), Expect = 1e-39
 Identities = 81/360 (22%), Positives = 129/360 (35%), Gaps = 63/360 (17%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
               L+L  +        E +    +  L+L++N    +E     G   NL  L+ L L 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP----GAFNNLFNLRTLGLR 88

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPA-SLANLPQLTSLSLSYNHFSGHIP 174
                                       N +  IP      L  LT L +S N     + 
Sbjct: 89  S---------------------------NRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121

Query: 175 SFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTL 234
                L  L  L +  N+LV     +F  L  L  L L    LT      L  L  L+ L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181

Query: 235 RLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHI 294
           RL   ++N  I  + F  L  L+V+ +    +  ++       +NLTS+ ++  NL+  +
Sbjct: 182 RLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AV 239

Query: 295 ELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLE 354
                  L  L++L LS N +   + ++ +    +L                     RL+
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPI---STIEGS-MLHEL--------------------LRLQ 275

Query: 355 WLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQ 411
            +QL   ++    P  F  +    L  LN+S N LT +E+     + NL  L L SN L 
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNY--LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  147 bits (374), Expect = 4e-38
 Identities = 76/310 (24%), Positives = 133/310 (42%), Gaps = 15/310 (4%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           LDL  + +  ++  +      P+LE L L  N   S++    F  L +L  L L ++   
Sbjct: 37  LDLGKNRIK-TLNQDE-FASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 69  GQIPSEI-SQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYS 127
             IP  + + LS +  LD+S+N  V +       + ++L  LK L + + D+  I    +
Sbjct: 94  -LIPLGVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDNDLVYIS-HRA 147

Query: 128 LTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187
            + L+S L  L L  CNL      +L++L  L  L L + + +         L +L  L 
Sbjct: 148 FSGLNS-LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 188 LEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
           +     +  +  + +    L+ L ++   LT      ++ L  L  L LS N ++ TI  
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEG 265

Query: 248 WLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQ 306
            +   L  L+ I L   +    +    F  L  L  + +S N L+  +E  +F  + NL+
Sbjct: 266 SMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLE 323

Query: 307 YLYLSQNRLS 316
            L L  N L+
Sbjct: 324 TLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  144 bits (365), Expect = 5e-37
 Identities = 82/333 (24%), Positives = 141/333 (42%), Gaps = 19/333 (5%)

Query: 157 PQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQ 216
            Q  ++      F   +P  +    +   L+L +N +     D F +   L  L+L+ N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 217 LTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE 276
           ++   P     L NL TL L  N L   IP  +FT L  L  + + +N+    +   +F+
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ 125

Query: 277 -LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGL 335
            L NL S+ +  N+L  +I    F+ L +L+ L L +  L+     +A S    L+ L L
Sbjct: 126 DLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRL 183

Query: 336 SACNISEFPD-FLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ 394
              NI+   D   +   RL+ L++S       +           L +L+++   LT V  
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPY 241

Query: 395 V---PLKNLRFLDLRSNL---LQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFI 448
           +    L  LRFL+L  N    ++GS++    RL    +   +L    P +F     +  +
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

Query: 449 DLSNNSLSGPIPECLVDSIT-LIWLDLHLNSFN 480
           ++S N L+  + E +  S+  L  L L  N   
Sbjct: 302 NVSGNQLTT-LEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (308), Expect = 1e-29
 Identities = 65/346 (18%), Positives = 117/346 (33%), Gaps = 51/346 (14%)

Query: 258 VIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV 317
            +     RF  ++P  I        + L  N +   +    FA   +L+ L L++N +S 
Sbjct: 15  AVLCHRKRFV-AVPEGIPT--ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS- 69

Query: 318 NTKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK 376
             +  A +    L  LGL +  +   P         L  L +SENKI   +   F D+  
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 377 DTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTG 433
             L +L + DN L  +       L +L  L L    L      +P               
Sbjct: 130 --LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----SIPTE------------- 170

Query: 434 EIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGL 493
               +      +  + L + +++            L  L++    +  ++      G  L
Sbjct: 171 ----ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 494 VNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNK--- 550
            +L +           ++ +   L+ LN++ N I       L +L  L  + L   +   
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 551 -----FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKA 591
                F GL            LR+L++S N+ T  L    F ++  
Sbjct: 287 VEPYAFRGL----------NYLRVLNVSGNQLT-TLEESVFHSVGN 321

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.0 bits (247), Expect = 6e-22
 Identities = 67/366 (18%), Positives = 118/366 (32%), Gaps = 51/366 (13%)

Query: 382 LNLSDNFLTDVEQVPLKNLRFLDLRSNL---LQGSVMVLPPRLIFFSISNNKLTGEIPCS 438
           +         V +      R LDL  N    L        P L    ++ N ++   P +
Sbjct: 16  VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 439 FCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLIL 498
           F     +  + L +N L             L  LD+  N     +  +  +   L +L +
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 499 NDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNT 558
            DN       ++ +  + L+ L +    +       L+ L  L+VL LR      +   +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 559 DARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFT 618
             R+   +L++L++S   +   +       L                             
Sbjct: 196 FKRL--YRLKVLEISHWPYLDTMTPNCLYGL----------------------------N 225

Query: 619 LKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLT 678
           L  + +    L+                      L  L+ LN S+N ++    S L  L 
Sbjct: 226 LTSLSITHCNLT-----AVPYLAVRH--------LVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 679 VLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGL 738
            L+ + L   +L    P     LN+L  LN+S NQL   + +      F S   +  L L
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEES----VFHSVGNLETLIL 327

Query: 739 CGFPLS 744
              PL+
Sbjct: 328 DSNPLA 333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  153 bits (389), Expect = 3e-40
 Identities = 104/522 (19%), Positives = 180/522 (34%), Gaps = 80/522 (15%)

Query: 29  LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSK 88
             +L+     S++     +      + S T    + S +    P    +  +M    L  
Sbjct: 10  NTFLQEPLRHSSNLTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 89  NDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGP 148
                              +  EL L+ + +S      SL  L   L  L    CN +  
Sbjct: 68  C---------------LDRQAHELELNNLGLS------SLPELPPHLESLVA-SCNSLTE 105

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS 208
           +P    +L  L   + +    S   P        L YL +  N L   +P+   N + L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPE-LQNSSFLK 156

Query: 209 FLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTG 268
            +D+  N L  +LP       +L  +    N L   +P      LP+L  I+  +N    
Sbjct: 157 IIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK- 208

Query: 269 SIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFP 328
            +P      ++L SI   +N L    EL     L  L  +Y   N L            P
Sbjct: 209 KLPD---LPLSLESIVAGNNILE---ELPELQNLPFLTTIYADNNLLK-----TLPDLPP 257

Query: 329 KLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNF 388
            L  L +    +++ P+  +S   L+  +   + +    PN         LY LN S N 
Sbjct: 258 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN---------LYYLNASSNE 308

Query: 389 LTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFI 448
           +  +  +   +L  L++ +N L   +  LPPRL     S N L  E+P        ++ +
Sbjct: 309 IRSLCDL-PPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLA-EVPELPQN---LKQL 362

Query: 449 DLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLP 508
            +  N L    P+           DL +NS    +P++  N   L  L +  N      P
Sbjct: 363 HVEYNPLRE-FPDIPES-----VEDLRMNSHLAEVPELPQN---LKQLHVETNPLRE-FP 412

Query: 509 QSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNK 550
               +   ++ L + + R+ D +        +L   +   + 
Sbjct: 413 DIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  132 bits (335), Expect = 3e-33
 Identities = 86/465 (18%), Positives = 171/465 (36%), Gaps = 78/465 (16%)

Query: 130 NLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHL--------- 180
           N+S++     L   + +  +P    N+   T    +++ +  + P               
Sbjct: 7   NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 181 ----KQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRL 236
               +Q + L L    L   +P+   +L     L  S N LT  LP   + L++L+    
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 237 SGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIEL 296
           +  +L+   P         LE + + +N+    +P  +     L  I + +N+L      
Sbjct: 122 NLKALSDLPPL--------LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK----- 166

Query: 297 CMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWL 356
            +     +L+++    N+L    +L      P L  +     ++ + PD   S   LE +
Sbjct: 167 KLPDLPPSLEFIAAGNNQL---EELPELQNLPFLTAIYADNNSLKKLPDLPLS---LESI 220

Query: 357 QLSENKIYGRIPNWFWDIGKDT-LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVM 415
               N +   +P    ++     L  +   +N L  +      +L  L++R N L   + 
Sbjct: 221 VAGNNIL-EELP----ELQNLPFLTTIYADNNLLKTLPD-LPPSLEALNVRDNYLT-DLP 273

Query: 416 VLPPRLIFFSISNNKLTG--EIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLD 473
            LP  L F  +S N  +G  E+P +      + +++ S+N +   + +      +L  L+
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPN------LYYLNASSNEIRS-LCDLPP---SLEELN 323

Query: 474 LHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPH 533
           +  N     +P +      L  LI + N     +P+   N   L+ L+V  N +   FP 
Sbjct: 324 VSNNKLI-ELPALPPR---LERLIASFNHLAE-VPELPQN---LKQLHVEYNPL-REFPD 374

Query: 534 WLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFT 578
               + +L +      +   L  N         L+ L +  N   
Sbjct: 375 IPESVEDLRMN-SHLAEVPELPQN---------LKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  130 bits (330), Expect = 2e-32
 Identities = 96/550 (17%), Positives = 171/550 (31%), Gaps = 122/550 (22%)

Query: 180 LKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLR---------- 229
              L       +NL   +P    N+   +    +W++     P      R          
Sbjct: 10  NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 230 ---NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLS 286
                  L L+   L+ ++P       P+LE +    N  T  +P     L +L     +
Sbjct: 69  LDRQAHELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 287 SNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDF 346
              LS             L+YL +S N+L    KL        L  + +   ++ + PD 
Sbjct: 123 LKALSDLPP--------LLEYLGVSNNQL---EKLPELQNSSFLKIIDVDNNSLKKLPDL 171

Query: 347 LRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYNLNLSDNFLTDVEQVPLKNLRFLDL 405
             S   LE++    N++   +P    ++     L  +   +N L  +  +   +L  +  
Sbjct: 172 PPS---LEFIAAGNNQL-EELP----ELQNLPFLTAIYADNNSLKKLPDL-PLSLESIVA 222

Query: 406 RSNLLQG-SVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLV 464
            +N+L+    +   P L      NN L   +P    +   +E +++ +N L+  +PE   
Sbjct: 223 GNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLTD-LPELPQ 277

Query: 465 DSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVAN 524
               L   +   +  +   P        L  L  + N+    L     +   L+ LNV+N
Sbjct: 278 SLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIRS-LCDLPPS---LEELNVSN 326

Query: 525 NRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTR 584
           N++    P   A  P L  LI   N    +            L+ L +  N      P  
Sbjct: 327 NKL-IELP---ALPPRLERLIASFNHLAEVPEL------PQNLKQLHVEYNPLR-EFPD- 374

Query: 585 YFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEG 644
                                                            V D   N    
Sbjct: 375 ---------------------------------------------IPESVEDLRMNSHLA 389

Query: 645 QIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFL 704
           ++PE+      LK L+   N L    P    +   +E L ++S R+V        + + L
Sbjct: 390 EVPELPQN---LKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKL 442

Query: 705 SKLNLSHNQL 714
                 H+  
Sbjct: 443 EDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  128 bits (323), Expect = 1e-31
 Identities = 99/573 (17%), Positives = 182/573 (31%), Gaps = 144/573 (25%)

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS 208
           I     +   L       ++ +  +P    ++K         +      P       +++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 209 FLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTG 268
                      RL  CL   R    L L+   L+ ++P       P+LE +    N  T 
Sbjct: 62  VS---------RLRDCL--DRQAHELELNNLGLS-SLPELP----PHLESLVASCNSLT- 104

Query: 269 SIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFP 328
            +P     L +L     +   LS             L+YL +S N+L    KL       
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQL---EKLPELQNSS 153

Query: 329 KLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYNLNLSDN 387
            L  + +   ++ + PD   S   LE++    N++   +P    ++     L  +   +N
Sbjct: 154 FLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQL-EELP----ELQNLPFLTAIYADNN 205

Query: 388 FLTDVEQVPLKNLRFLDLRSNLLQG-SVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIE 446
            L  +  +   +L  +   +N+L+    +   P L      NN L   +P    +   +E
Sbjct: 206 SLKKLPDL-PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LE 260

Query: 447 FIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGP 506
            +++ +N L+  +PE       L   +   +  +   P        L  L  + N+    
Sbjct: 261 ALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIRS- 311

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPK 566
           L     +   L+ LNV+NN+        L +LP L                       P+
Sbjct: 312 LCDLPPS---LEELNVSNNK--------LIELPALP----------------------PR 338

Query: 567 LRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEM 626
           L  L  S N    V      QNLK                                    
Sbjct: 339 LERLIASFNHLAEVPEL--PQNLK------------------------------------ 360

Query: 627 NILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLS 686
                   +    N    + P++   +  L+M    ++HL   +P   +NL  L    + 
Sbjct: 361 -------QLHVEYNPLR-EFPDIPESVEDLRM----NSHLA-EVPELPQNLKQL---HVE 404

Query: 687 SNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIP 719
           +N L  + P    S+     L ++  ++  P  
Sbjct: 405 TNPLR-EFPDIPESV---EDLRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (261), Expect = 9e-24
 Identities = 64/395 (16%), Positives = 136/395 (34%), Gaps = 87/395 (22%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
            +     L    +L+ +++ +N     L         SL  +   N+        E+  L
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSL-KKLPDL----PPSLEFIAAGNNQLE--ELPELQNL 194

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
             + ++    N    ++      L +    L+ +V                         
Sbjct: 195 PFLTAIYADNN---SLKK-----LPDLPLSLESIVAGN---------------------- 224

Query: 139 HLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIP 198
                N++  +P  L NLP LT++    N     +P     L+ L   +    +L    P
Sbjct: 225 -----NILEELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL----P 273

Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
           +   +LT L   +  ++ L+   P       NL  L  S N +       L  + P LE 
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRS-----LCDLPPSLEE 321

Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           +++ +N+    +P+       L  +  S N+L+   EL      +NL+ L++  N L   
Sbjct: 322 LNVSNNKLI-ELPA---LPPRLERLIASFNHLAEVPEL-----PQNLKQLHVEYNPL--- 369

Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT 378
            +         +  L ++  +++E P+  ++   L+ L +  N +    P+       ++
Sbjct: 370 REFP--DIPESVEDLRMN-SHLAEVPELPQN---LKQLHVETNPLR-EFPDIP-----ES 417

Query: 379 LYNLNLSDNFLTDVEQVP---LKNLRFLDLRSNLL 410
           + +L ++   + D  +        L       +  
Sbjct: 418 VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 18/115 (15%)

Query: 619 LKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKL-------------NLLKMLNFSHNH 665
           L  + VE   +        + + +E   P   G+                   L  ++  
Sbjct: 23  LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82

Query: 666 LTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ 720
           L+  +P    +L   ESL  S N L  ++P    SL  L   N +   L    P 
Sbjct: 83  LS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL 132

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  153 bits (389), Expect = 4e-40
 Identities = 71/445 (15%), Positives = 139/445 (31%), Gaps = 27/445 (6%)

Query: 155 NLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSW 214
           N  +     ++ +     + S       +  L+L  N L           T+L  L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 215 NQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTI 274
           N L       L+ L  L TL L+ N +   +        P +E +H  +N  +  +  + 
Sbjct: 68  NVLYE-TLD-LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS-RVSCSR 118

Query: 275 FELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLG 334
            +     +I L++N ++  +          +QYL L  N +      +  ++   L  L 
Sbjct: 119 GQ--GKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 335 LSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ 394
           L    I +    +    +L+ L LS NK+   +   F       +  ++L +N L  +E+
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAG--VTWISLRNNKLVLIEK 231

Query: 395 V--PLKNLRFLDLRSNLLQGSVM--VLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL 450
                +NL   DLR N      +           +++   +      +            
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 451 SNNSLSGPIPECLVDSITLIWLDLHLNSFNGS----IPQISANGSGLVNLILNDNQFEGP 506
                           I L   +  L S  GS    +     N +    +     Q+   
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPK 566
           + Q          L      +D+   +      EL   + ++     L   T+       
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE---QSP 408

Query: 567 LRILDLSRNEFTGVLPTRYFQNLKA 591
           L++L      +  +   +      A
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNA 433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  146 bits (371), Expect = 9e-38
 Identities = 65/393 (16%), Positives = 133/393 (33%), Gaps = 36/393 (9%)

Query: 28  LLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLS 87
                +   +  +      ++S      ++  L+LS +  S    ++++  +K+  L+LS
Sbjct: 8   NGNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 88  KNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIG 147
            N             +E+L+ L+ L L+   +  ++       +  S+  LH    N I 
Sbjct: 67  SNVLYETLD------LESLSTLRTLDLNNNYVQELL-------VGPSIETLHAAN-NNIS 112

Query: 148 PIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVG-GIPDSFVNLTQ 206
            +  S        ++ L+ N  +           ++ YL+L+ N +      +   +   
Sbjct: 113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 207 LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
           L  L+L +N +   +   +     L TL LS N L    P   F     +  I LR+N+ 
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKL 226

Query: 267 TGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANST 326
              I   +    NL    L  N          F++ + +Q +     +  +  + +   T
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECT 284

Query: 327 FPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-----LYN 381
            P L   G   C     P      DRL  L+  E+ +     +    +  +         
Sbjct: 285 VPTLGHYGAYCCEDLPAPFA----DRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 382 LNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQ 411
           ++        V     +  +    L+ +   L 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  140 bits (354), Expect = 2e-35
 Identities = 66/483 (13%), Positives = 133/483 (27%), Gaps = 46/483 (9%)

Query: 51  FGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLK 110
                      +++S     + S       +  LDLS N   +I +      +   TKL+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA----ADLAPFTKLE 61

Query: 111 ELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFS 170
            L LS   +   +    L +L S+L  L L    +       L   P + +L  + N+ S
Sbjct: 62  LLNLSSNVLYETL---DLESL-STLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 171 GHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG-RLPSCLKGLR 229
             +    S  +    + L  N +           +++ +LDL  N++             
Sbjct: 113 -RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNN 289
            L  L L  N +   +   +      L+ + L  N+    +         +T I L +N 
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 290 LSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRS 349
           L   IE       +NL++  L  N     T  D  S   ++  +           +    
Sbjct: 226 LV-LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 350 QDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNL 409
                                            +L   F   +  +  K    L  + + 
Sbjct: 284 T-VPTLGHYGAYCC------------------EDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 410 LQG--SVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSI 467
            +          R         +    I            ++    +L          + 
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAH 383

Query: 468 TLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPL-PQSLANCSRLQVLNVANNR 526
             +   L        +   +   S L  L     ++E     Q     + ++  ++  ++
Sbjct: 384 AELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

Query: 527 IDD 529
              
Sbjct: 444 ETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (349), Expect = 7e-35
 Identities = 68/395 (17%), Positives = 125/395 (31%), Gaps = 26/395 (6%)

Query: 196 GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
            I +   N  +     ++ + L   L S  +   N+  L LSGN L+  I +        
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           LE+++L  N         +  L  L ++ L++N +             +++ L+ + N +
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNI 111

Query: 316 SVNTKLDANSTFPKLLKLGLSACNISEFPDF-LRSQDRLEWLQLSENKIYGRIPNWFWDI 374
              +++   S       + L+   I+   D     + R+++L L  N+I           
Sbjct: 112 ---SRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA- 166

Query: 375 GKDTLYNLNLSDNFLTDV-EQVPLKNLRFLDLRSNLLQG--SVMVLPPRLIFFSISNNKL 431
             DTL +LNL  NF+ DV  QV    L+ LDL SN L            + + S+ NNKL
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226

Query: 432 TGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS 491
              I  +   +  +E  DL  N                +   +   +      Q     +
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV-QTVAKQTVKKLTGQNEEECT 284

Query: 492 GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID----DTFPHWLAQLPELLVLILR 547
                       E            L+    A         +              +   
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344

Query: 548 SNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLP 582
             ++  +I     R        L+  +      + 
Sbjct: 345 KEQYRTVIDQVTLRK--QAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (285), Expect = 1e-26
 Identities = 56/391 (14%), Positives = 110/391 (28%), Gaps = 27/391 (6%)

Query: 24  SSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLS 83
             L + P +ETL+  +N    ++      R     ++ L+N+  +     +    S++  
Sbjct: 93  QELLVGPSIETLHAANN----NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 84  LDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGC 143
           LDL  N    I++  +  L  +   L+ L L    +  +            L  L L+  
Sbjct: 149 LDLKLN---EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK----LKTLDLSS- 200

Query: 144 NLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG-IPDSFV 202
           N +  +     +   +T +SL  N     I   L   + L + +L  N    G + D F 
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
              ++  +      +        +                  +P+     L  L+     
Sbjct: 260 KNQRVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHA 316

Query: 263 DNRFTGS----IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
                GS    +            I          +   +  R +    L   +  L   
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALD-E 374

Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT 378
              +      +L      A    E       Q  L+ L+        R    + +     
Sbjct: 375 QVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK----RYEEMYVEQQSVQ 430

Query: 379 LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNL 409
              +   D +     Q+  +N R   L    
Sbjct: 431 NNAIRDWDMYQHKETQLAEENARLKKLNGEA 461

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 42/309 (13%), Positives = 82/309 (26%), Gaps = 13/309 (4%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           LDL  + +  ++           LE LNL  N     +          L  L+LS++  +
Sbjct: 149 LDLKLNEID-TVNFAELAASSDTLEHLNLQYNFI-YDVKGQVV--FAKLKTLDLSSNKLA 204

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSL 128
             +  E    + +  + L  N  V IE       +     L+   L         L    
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLVLIEKA-----LRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
           +      +    T   L G               +             L  LK+  +  L
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 189 E-QNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
             Q +    +     N  +   +D    Q    +       +  +TL     +L+    S
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQVS 377

Query: 248 WLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY 307
                   L+    +       +     E   L  +R                +   ++ 
Sbjct: 378 NGRRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRD 436

Query: 308 LYLSQNRLS 316
             + Q++ +
Sbjct: 437 WDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.7 bits (194), Expect = 2e-15
 Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 32/235 (13%)

Query: 482 SIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL 541
           +I +I  NG+      + D+  +  L     +   ++ L+++ N +       LA   +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 542 LVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTV 601
            +L L SN  Y  +           LR LDL+ N    +L     + L A    +N +  
Sbjct: 61  ELLNLSSNVLYETLDLES----LSTLRTLDLNNNYVQELLVGPSIETLHA----ANNN-- 110

Query: 602 QVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNF 661
                            +  +          +    ++N+         G  + ++ L+ 
Sbjct: 111 -----------------ISRVSCSRGQGKKNI--YLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 662 SHNHLTG-RIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
             N +          +   LE L+L  N +   +         L  L+LS N+L 
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 20/74 (27%), Positives = 30/74 (40%)

Query: 646 IPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLS 705
           I E+    N  K+   + + L   + S  ++   ++ LDLS N L       L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 706 KLNLSHNQLEGPIP 719
            LNLS N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
           +   + +  +  +  +      +K L+ S N L+    + L   T LE L+LSSN L   
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE- 72

Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIPQGPQ 723
               L SL+ L  L+L++N ++  +  GP 
Sbjct: 73  -TLDLESLSTLRTLDLNNNYVQE-LLVGPS 100

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  151 bits (383), Expect = 6e-40
 Identities = 93/391 (23%), Positives = 142/391 (36%), Gaps = 35/391 (8%)

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS 208
           I ++L        + +       +       L     +  + + +         +  Q+ 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 209 FLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTG 268
            L+L+  Q+             +  L +  N++   +P  +F  +P L V+ L  N  + 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 269 SIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTF 327
           S+P  IF     LT++ +S+NNL   IE   F    +LQ L LS NRL   T +D  S  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL---THVDL-SLI 185

Query: 328 PKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDN 387
           P L    +S   +S           +E L  S N I               L  L L  N
Sbjct: 186 PSLFHANVSYNLLSTLAI----PIAVEELDASHNSINVVRGPVN-----VELTILKLQHN 236

Query: 388 FLTDVEQ-VPLKNLRFLDLRSNLLQ---GSVMVLPPRLIFFSISNNKLTGEIPCSFCTAA 443
            LTD    +    L  +DL  N L+       V   RL    ISNN+L   +        
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

Query: 444 PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANG-SGLVNLILNDNQ 502
            ++ +DLS+N L   +         L  L L  N    SI  +  +    L NL L+ N 
Sbjct: 296 TLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSHND 350

Query: 503 FEGPLPQSLANCSRLQVLNVANNRIDDTFPH 533
           ++        N  R    NVA   +DD   H
Sbjct: 351 WDC-------NSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  147 bits (373), Expect = 1e-38
 Identities = 74/413 (17%), Positives = 138/413 (33%), Gaps = 57/413 (13%)

Query: 23  NSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKML 82
           +S+L        +++     +          L +   +   NS       + +    ++ 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFE-DITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 83  SLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTG 142
            L+L+      I++            +++L +                            
Sbjct: 73  LLNLNDLQIEEIDT----YAFAYAHTIQKLYMGF-------------------------- 102

Query: 143 CNLIGPIPAS-LANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSF 201
            N I  +P     N+P LT L L  N  S        +  +L  L++  NNL     D+F
Sbjct: 103 -NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 202 VNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHL 261
              T L  L LS N+LT  +   L  + +L    +S N L+         +   +E +  
Sbjct: 162 QATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS------TLAIPIAVEELDA 212

Query: 262 RDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKL 321
             N     +   +   V LT ++L  NNL+   +         L  + LS N L    K+
Sbjct: 213 SHNSIN-VVRGPVN--VELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNEL---EKI 263

Query: 322 DANS--TFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTL 379
             +      +L +L +S   +     + +    L+ L LS N +   +        +  L
Sbjct: 264 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR--L 320

Query: 380 YNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQG-SVMVLPPRLIFFSISNNKL 431
            NL L  N +  ++      L+ L L  N     S+  L   +   ++ +   
Sbjct: 321 ENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (271), Expect = 2e-25
 Identities = 60/278 (21%), Positives = 101/278 (36%), Gaps = 34/278 (12%)

Query: 29  LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI-SQLSKMLSLDLS 87
           +P L  L L  ND  SSL    F     LT L++SN+    +I  +     + + +L LS
Sbjct: 116 VPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 173

Query: 88  KNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLS--------------S 133
            N    ++       +  +  L    +S   +ST+ +  ++  L                
Sbjct: 174 SNRLTHVD-------LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 226

Query: 134 SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNL 193
            L+ L L   N +      L N P L  + LSYN     +      +++L  L +  N L
Sbjct: 227 ELTILKLQH-NNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 194 VGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVL 253
           V  +      +  L  LDLS N L   +         L  L L  NS+  T+     +  
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK---LSTH 338

Query: 254 PYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS 291
             L+ + L  N +  +    +F   N+    +   +  
Sbjct: 339 HTLKNLTLSHNDWDCNSLRALF--RNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (255), Expect = 3e-23
 Identities = 74/419 (17%), Positives = 139/419 (33%), Gaps = 94/419 (22%)

Query: 302 LKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSE 360
             ++     +Q+       +    T      +      + + P   L S  ++E L L++
Sbjct: 23  FYDVHIDMQTQDVYFGFEDI----TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78

Query: 361 NKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQGSVMVL 417
            +I       F       +  L +  N +  +       +  L  L L  N L      L
Sbjct: 79  LQIEEIDTYAFAYAHT--IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----SL 132

Query: 418 PPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLN 477
           P   IF +                   +  + +SNN+L     +    + +L  L L  N
Sbjct: 133 PRG-IFHNTPK----------------LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175

Query: 478 SFNGSIPQISANG-SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLA 536
                +  +  +    L +  ++ N        +LA    ++ L+ ++N I+        
Sbjct: 176 R----LTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNV 226

Query: 537 QLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGS 596
           +L  L    L+ N     + +T   + +P L  +DLS NE    +    F  ++ + R  
Sbjct: 227 ELTIL---KLQHNN----LTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLER-- 276

Query: 597 NTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLL 656
                                                 +  S+NR    +      +  L
Sbjct: 277 --------------------------------------LYISNNRLV-ALNLYGQPIPTL 297

Query: 657 KMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
           K+L+ SHNHL   +  +      LE+L L  N +V  +   L++ + L  L LSHN  +
Sbjct: 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 55/344 (15%), Positives = 115/344 (33%), Gaps = 63/344 (18%)

Query: 378 TLYNLNL---SDNFLTDVEQVPLKNLRFLDLRSNLL---QGSVMVLPPRLIFFSISNNKL 431
             Y++++   + +     E + L N + +  +++ +     +++    ++   ++++ ++
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 432 TGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS 491
                 +F  A  I+ + +  N++    P    +   L  L L  N  +     I  N  
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141

Query: 492 GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
            L  L +++N  E     +    + LQ L +++NR+       L+ +P L    +  N  
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL 198

Query: 552 YGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGR 611
             L            +  LD S N    V+       L                      
Sbjct: 199 STLAIP-------IAVEELDASHNSIN-VVRGPVNVELT--------------------- 229

Query: 612 YYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIP 671
                                 ++    N        ++     L  ++ S+N L   + 
Sbjct: 230 ----------------------ILKLQHNNLT-DTAWLLN-YPGLVEVDLSYNELEKIMY 265

Query: 672 SSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
                +  LE L +S+NRLV  +      +  L  L+LSHN L 
Sbjct: 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 39/248 (15%), Positives = 81/248 (32%), Gaps = 53/248 (21%)

Query: 469 LIWLDLHLNSFNGSIPQISANG--SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNR 526
            ++ D+H++     +     +   +    +   ++         L +  ++++LN+ + +
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 527 IDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYF 586
           I++   +  A    +  L +  N    L  +       P L +L L RN+ +  LP   F
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN--VPLLTVLVLERNDLS-SLPRGIF 137

Query: 587 QNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQI 646
            N   +                                          +  S+N  E   
Sbjct: 138 HNTPKLT----------------------------------------TLSMSNNNLERIE 157

Query: 647 PEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSK 706
            +       L+ L  S N LT  +  S   +  L   ++S N L     + L     + +
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLL-----STLAIPIAVEE 209

Query: 707 LNLSHNQL 714
           L+ SHN +
Sbjct: 210 LDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 12/94 (12%), Positives = 35/94 (37%), Gaps = 2/94 (2%)

Query: 624 VEMNILSIFLVIDFSSNRFEGQIPEVVGKLNL--LKMLNFSHNHLTGRIPSSLRNLTVLE 681
           ++ N+    +  D   +     +      + L   K++ F ++ +     + L +   +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 682 SLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
            L+L+  ++           + + KL +  N + 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  150 bits (380), Expect = 3e-38
 Identities = 94/409 (22%), Positives = 144/409 (35%), Gaps = 35/409 (8%)

Query: 131 LSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQ 190
           +     Y           I ++L        + +       +       L     +  + 
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 191 NNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLF 250
           + +         +  Q+  L+L+  Q+             +  L +  N++   +P  +F
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVF 119

Query: 251 TVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLY 309
             +P L V+ L  N  + S+P  IF     LT++ +S+NNL   IE   F    +LQ L 
Sbjct: 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQ 177

Query: 310 LSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPN 369
           LS NRL   T +D  S  P L    +S   +S           +E L  S N I      
Sbjct: 178 LSSNRL---THVDL-SLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNSINVVRGP 229

Query: 370 WFWDIGKDTLYNLNLSDNFLTDVEQ-VPLKNLRFLDLRSNLLQ---GSVMVLPPRLIFFS 425
                    L  L L  N LTD    +    L  +DL  N L+       V   RL    
Sbjct: 230 VN-----VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQ 485
           ISNN+L   +         ++ +DLS+N L   +         L  L L  N    SI  
Sbjct: 285 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN----SIVT 338

Query: 486 ISANG-SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPH 533
           +  +    L NL L+ N ++        N  R    NVA   +DD   H
Sbjct: 339 LKLSTHHTLKNLTLSHNDWDC-------NSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  148 bits (374), Expect = 2e-37
 Identities = 91/549 (16%), Positives = 173/549 (31%), Gaps = 73/549 (13%)

Query: 23  NSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI-SQLSKM 81
           +S+L        +++     +          L +   +   NS    ++P+ +     ++
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFE-DITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 82  LSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLT 141
             L+L+      I++            +++L +                           
Sbjct: 78  ELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGF------------------------- 108

Query: 142 GCNLIGPIPAS-LANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDS 200
             N I  +P     N+P LT L L  N  S        +  +L  L++  NNL     D+
Sbjct: 109 --NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
           F   T L  L LS N+LT  +   L  + +L    +S N L+         +   +E + 
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS------TLAIPIAVEELD 217

Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
              N     +   +   V LT ++L  NNL+   +         L  + LS N L    K
Sbjct: 218 ASHNSIN-VVRGPVN--VELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNEL---EK 268

Query: 321 LDANS--TFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT 378
           +  +      +L +L +S   +     + +    L+ L LS N +   +        +  
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-- 325

Query: 379 LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQG-SVMVLPPRLIFFSISNNKLTGEIPC 437
           L NL L  N +  ++      L+ L L  N     S+  L   +   ++ +     +I  
Sbjct: 326 LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY 385

Query: 438 SF-----CTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDL-HLNSFNGSIPQISANG- 490
                  C  +   ++D     ++       V            +NS       I+  G 
Sbjct: 386 QLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGG 445

Query: 491 ---SGLVNLILNDNQFEGPLPQ----SLANCSRLQVLNVANNRIDDTFPHWLAQLPELLV 543
               G   L    N+    + Q     +     LQ L+   +     +      L     
Sbjct: 446 VPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSD 505

Query: 544 LILRSNKFY 552
            + +     
Sbjct: 506 NLNKVFTHL 514

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  137 bits (347), Expect = 4e-34
 Identities = 72/382 (18%), Positives = 137/382 (35%), Gaps = 25/382 (6%)

Query: 173 IPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLV 232
           I S L +    Y ++++            + L     +    + +     + L   R + 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 233 TLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLS 291
            L L+   +   I ++ F     ++ +++  N     +P  +F+ +  LT + L  N+LS
Sbjct: 79  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 292 GHIELCMFARLKNLQYLYLSQNRLSVNTKLDAN--STFPKLLKLGLSACNISEFPDFLRS 349
             +   +F     L  L +S N L    +++ +       L  L LS+  ++     L  
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNL---ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 192

Query: 350 QDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNL 409
              L    +S N +   +           +  L+ S N +  V       L  L L+ N 
Sbjct: 193 --SLFHANVSYNLL-STLAIPI------AVEELDASHNSINVVRGPVNVELTILKLQHNN 243

Query: 410 LQG-SVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT 468
           L   + ++  P L+   +S N+L   +   F     +E + +SNN L   +        T
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPT 302

Query: 469 LIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID 528
           L  LDL  N     + +       L NL L+ N     L  S      L+ L +++N  D
Sbjct: 303 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWD 358

Query: 529 -DTFPHWLAQLPELLVLILRSN 549
            ++       +    V     +
Sbjct: 359 CNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 11/63 (17%), Positives = 27/63 (42%)

Query: 653 LNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHN 712
           LN  K++ F ++ +     + L +   +E L+L+  ++           + + KL +  N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 713 QLE 715
            + 
Sbjct: 110 AIR 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  136 bits (345), Expect = 1e-35
 Identities = 53/281 (18%), Positives = 98/281 (34%), Gaps = 19/281 (6%)

Query: 133 SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNN 192
           +      +T  +L   + +   +   +  L LS N  S    + L+   +L  LNL  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 193 LVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTV 252
           L     D   +L+ L  LDL+ N +       L    ++ TL  + N+++  +       
Sbjct: 70  LY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQG 121

Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
              +   +L +N+ T            +  + L  N +       + A    L++L L  
Sbjct: 122 KKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 313 NRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFW 372
           N +     +     F KL  L LS+  ++      +S   + W+ L  NK+   I     
Sbjct: 179 NFI---YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALR 234

Query: 373 DIGKDTLYNLNLSDNFLTDV--EQVPLKNLRFLDLRSNLLQ 411
                 L + +L  N            KN R   +    ++
Sbjct: 235 FS--QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  135 bits (342), Expect = 3e-35
 Identities = 54/267 (20%), Positives = 96/267 (35%), Gaps = 22/267 (8%)

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS 208
           I     N  +     ++ +     + S       +  L+L  N L           T+L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 209 FLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTG 268
            L+LS N L       L+ L  L TL L+ N +   +        P +E +H  +N  + 
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS- 112

Query: 269 SIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFP 328
            +  +  +     +I L++N ++  +          +QYL L  N +      +  ++  
Sbjct: 113 RVSCSRGQ--GKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 329 KLLKLGLSACNISEFPD--FLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD 386
            L  L L    I +            L+ L LS NK+   +   F       +  ++L +
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVFAK---LKTLDLSSNKL-AFMGPEFQSAAG--VTWISLRN 223

Query: 387 NFLTDVEQV--PLKNLRFLDLRSNLLQ 411
           N L  +E+     +NL   DLR N   
Sbjct: 224 NKLVLIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  132 bits (333), Expect = 5e-34
 Identities = 56/324 (17%), Positives = 113/324 (34%), Gaps = 24/324 (7%)

Query: 29  LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSK 88
               +   +  +      ++S      ++  L+LS +  S    ++++  +K+  L+LS 
Sbjct: 9   GNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 89  NDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGP 148
           N             +E+L+ L+ L L+   +  +++  S+  L    +       N I  
Sbjct: 68  NVLYETLD------LESLSTLRTLDLNNNYVQELLVGPSIETL--HAAN------NNISR 113

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVG-GIPDSFVNLTQL 207
           +  S        ++ L+ N  +           ++ YL+L+ N +      +   +   L
Sbjct: 114 VSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 208 SFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267
             L+L +N +   +         L TL LS N L   +    F     +  I LR+N+  
Sbjct: 172 EHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLV 227

Query: 268 GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTF 327
             I   +    NL    L  N          F++ + +Q +     +  +  + +   T 
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTV 285

Query: 328 PKLLKLGLSACNISEFPDFLRSQD 351
           P L   G   C     P   R   
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIA 309

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  127 bits (321), Expect = 2e-32
 Identities = 54/292 (18%), Positives = 96/292 (32%), Gaps = 23/292 (7%)

Query: 47  ISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENL 106
           I              +++S     + S       +  LDLS N   +I +      +   
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA----ADLAPF 57

Query: 107 TKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSY 166
           TKL+ L LS   +        L +L S+L  L L    +       L   P + +L  + 
Sbjct: 58  TKLELLNLSSNVLYET---LDLESL-STLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 167 NHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG-RLPSCL 225
           N+ S  +    S  +    + L  N +           +++ +LDL  N++         
Sbjct: 109 NNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 226 KGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRL 285
                L  L L  N +   +   +      L+ + L  N+    +         +T I L
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 286 SSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSA 337
            +N L   IE       +NL++  L  N     T  D  S   ++  +    
Sbjct: 222 RNNKLV-LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (317), Expect = 7e-32
 Identities = 72/348 (20%), Positives = 128/348 (36%), Gaps = 40/348 (11%)

Query: 196 GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
            I +   N  +     ++ + L   L S  +   N+  L LSGN L+  I +        
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           LE+++L  N         +  L  L ++ L++N +             +++ L+ + N +
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNI 111

Query: 316 SVNTKLDANSTFPKLLKLGLSACNISEFPDF-LRSQDRLEWLQLSENKIYGRIPNWFWDI 374
              +++  +        + L+   I+   D     + R+++L L  N+I           
Sbjct: 112 ---SRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA- 166

Query: 375 GKDTLYNLNLSDNFLTDVE-QVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTG 433
             DTL +LNL  NF+ DV+ QV    L+ LDL                     S+NKL  
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL---------------------SSNKLA- 204

Query: 434 EIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGL 493
            +   F +AA + +I L NN L   I + L  S  L   DL  N F+             
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQ 262

Query: 494 VNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL 541
               +     +    Q+   C+   + +      +D    +  +L  L
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (309), Expect = 6e-31
 Identities = 60/357 (16%), Positives = 105/357 (29%), Gaps = 48/357 (13%)

Query: 173 IPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLV 232
           I     +  +     +  ++L   +     +   +  LDLS N L+    + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 233 TLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSG 292
            L LS N L           L  L  + L +N         +    ++ ++  ++NN+S 
Sbjct: 62  LLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 293 HIELCMFARLKNLQYLYLSQNRLSVNTKLDANS--TFPKLLKLGLSACNIS--EFPDFLR 348
            +        +  + +YL+ N++   T L         ++  L L    I    F +   
Sbjct: 113 RVSCSRG---QGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 349 SQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDV--EQVPLKNLRFLDLR 406
           S D LE L L  N IY  +      +    L  L+LS N L  +  E      + ++ L 
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKG---QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL- 221

Query: 407 SNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDS 466
                                NNKL   I  +   +  +E  DL  N             
Sbjct: 222 --------------------RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 467 ITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVA 523
              +   +   +      Q     +            E            L   +  
Sbjct: 261 NQRV-QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 45/304 (14%), Positives = 95/304 (31%), Gaps = 49/304 (16%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           L+LS       +     L  L  L TL+L +N               S+  L+ +N+  S
Sbjct: 63  LNLS----SNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNIS 112

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSL 128
            ++           ++ L+ N    +            ++++ L L   ++ T+      
Sbjct: 113 -RVSCSR--GQGKKNIYLANNKITMLRD----LDEGCRSRVQYLDLKLNEIDTV------ 159

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
                                    A+   L  L+L YN     +        +L  L+L
Sbjct: 160 -------------------NFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDL 198

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW 248
             N L   +   F +   ++++ L  N+L   +   L+  +NL    L GN  +      
Sbjct: 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 249 LFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL 308
            F+    ++ +  +  +    +     E   + ++          +      RL  L + 
Sbjct: 257 FFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHH 313

Query: 309 YLSQ 312
           +   
Sbjct: 314 HHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 6e-19
 Identities = 57/333 (17%), Positives = 105/333 (31%), Gaps = 51/333 (15%)

Query: 419 PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNS 478
            R     ++++ L   +     +A  ++ +DLS N LS      L     L  L+L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 479 FNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQL 538
                  +  + S L  L LN+N       Q L     ++ L+ ANN I        ++ 
Sbjct: 70  LY-ETLDLE-SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CSRG 119

Query: 539 PELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNT 598
                + L +NK   L    +      +++ LDL  NE   V       +          
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNEIDTVNFAELAASSDT------- 170

Query: 599 STVQVQYMHRFGRYYSAFFTLKGIDVEMNILS-----IFL----VIDFSSNRFEGQIPEV 649
                               L+ ++++ N +      +       +D SSN+    +   
Sbjct: 171 --------------------LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPE 209

Query: 650 VGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNL 709
                 +  ++  +N L   I  +LR    LE  DL  N        +           +
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTV 267

Query: 710 SHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFP 742
           +   ++    Q  +  T  +  + G       P
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 36/237 (15%)

Query: 482 SIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL 541
           +I +I  NG+      + D+  +  L     +   ++ L+++ N +       LA   +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 542 LVLILRSNKFYGL--IGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTS 599
            +L L SN  Y    + +         LR LDL+ N    +L      +++ +   +N  
Sbjct: 61  ELLNLSSNVLYETLDLES------LSTLRTLDLNNNYVQELLV---GPSIETLHAANNNI 111

Query: 600 TVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKML 659
           +                       V  +       I  ++N+         G  + ++ L
Sbjct: 112 S----------------------RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 660 NFSHNHLTG-RIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
           +   N +          +   LE L+L  N +   +         L  L+LS N+L 
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 20/74 (27%), Positives = 30/74 (40%)

Query: 646 IPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLS 705
           I E+    N  K+   + + L   + S  ++   ++ LDLS N L       L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 706 KLNLSHNQLEGPIP 719
            LNLS N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  133 bits (338), Expect = 1e-34
 Identities = 65/285 (22%), Positives = 106/285 (37%), Gaps = 40/285 (14%)

Query: 157 PQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQ 216
           P    L L  N  +        +LK L+ L L  N +    P +F  L +L  L LS NQ
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 217 LTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS-IPSTIF 275
           L   LP  +   + L  LR+  N +   +   +F  L  + V+ L  N    S I +  F
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 276 E-LVNLTSIRLSSNNLSG--------------------HIELCMFARLKNLQYLYLSQNR 314
           + +  L+ IR++  N++                      ++      L NL  L LS N 
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 315 LSVNTKLDANS--TFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFW 372
           +   + +D  S    P L +L L+   + + P  L     ++ + L  N I     N F 
Sbjct: 228 I---SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 373 DIGKDT----LYNLNLSDNFLTDVEQVP-----LKNLRFLDLRSN 408
             G +T       ++L  N +   E  P     +     + L + 
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  133 bits (336), Expect = 3e-34
 Identities = 68/315 (21%), Positives = 125/315 (39%), Gaps = 31/315 (9%)

Query: 11  LSCSWLH-GSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSG 69
           + CS L    +P +    L P    L+L +N   + +    F  L +L  L L N+  S 
Sbjct: 36  VQCSDLGLEKVPKD----LPPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISK 90

Query: 70  QIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLT 129
             P   + L K+  L LSKN    +   +          L+EL + E +++ +       
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKM-------PKTLQELRVHENEITKV-RKSVFN 142

Query: 130 NLSSSLSYLHLTGCNL-IGPIPA-SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187
            L + +  + L    L    I   +   + +L+ + ++  + +  IP  L     L  L+
Sbjct: 143 GL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELH 198

Query: 188 LEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
           L+ N +      S   L  L+ L LS+N ++      L    +L  L L+ N L   +P 
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

Query: 248 WLFTVLPYLEVIHLRDNRFTGSIPSTIF-------ELVNLTSIRLSSNNLSGH-IELCMF 299
            L     Y++V++L +N  + +I S  F       +  + + + L SN +    I+   F
Sbjct: 258 GLA-DHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

Query: 300 ARLKNLQYLYLSQNR 314
             +     + L   +
Sbjct: 316 RCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (290), Expect = 3e-28
 Identities = 73/397 (18%), Positives = 121/397 (30%), Gaps = 102/397 (25%)

Query: 158 QLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQL 217
            L  +  S       +P  L        L+L+ N +       F NL  L  L L  N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 218 TGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE- 276
           +   P     L  L  L LS N L   +P  +      L+ + + +N  T  +  ++F  
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEIT-KVRKSVFNG 143

Query: 277 LVNLTSIRLSSNNL-SGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGL 335
           L  +  + L +N L S  IE   F  +K L Y+ ++   +   T +      P L     
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI---TTIPQG-LPPSL----- 194

Query: 336 SACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV 395
                               L L  NKI          +   +L  L             
Sbjct: 195 ------------------TELHLDGNKIT--------KVDAASLKGL------------- 215

Query: 396 PLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSL 455
              NL  L L  N +      +       +  +                +  + L+NN L
Sbjct: 216 --NNLAKLGLSFNSISA----VDNG-SLANTPH----------------LRELHLNNNKL 252

Query: 456 SGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCS 515
              +P  L D   +  + LH N        ISA         +  N F    P      +
Sbjct: 253 VK-VPGGLADHKYIQVVYLHNN-------NISA---------IGSNDFCP--PGYNTKKA 293

Query: 516 RLQVLNVANNRIDDTF--PHWLAQLPELLVLILRSNK 550
               +++ +N +      P     +     + L + K
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.9 bits (234), Expect = 5e-21
 Identities = 67/369 (18%), Positives = 122/369 (33%), Gaps = 87/369 (23%)

Query: 230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSN 288
           +L  ++ S   L   +P  L    P   ++ L++N+ T  I    F+ L NL ++ L +N
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN 86

Query: 289 NLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDF-L 347
            +S  I    FA L  L+ LYLS+N+L    +L        L +L +    I++      
Sbjct: 87  KIS-KISPGAFAPLVKLERLYLSKNQL---KELPEK-MPKTLQELRVHENEITKVRKSVF 141

Query: 348 RSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRS 407
              +++  ++L  N +                 +  + +          +K L ++ +  
Sbjct: 142 NGLNQMIVVELGTNPLK----------------SSGIENGAFQG-----MKKLSYIRIAD 180

Query: 408 NLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSI 467
             +      LPP L    +  NK+T                                   
Sbjct: 181 TNITTIPQGLPPSLTELHLDGNKIT----------------------------------- 205

Query: 468 TLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRI 527
                 +   S  G         + L  L L+ N        SLAN   L+ L++ NN++
Sbjct: 206 -----KVDAASLKGL--------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 528 DDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIF----PKLRILDLSRNEFTGV-LP 582
               P  LA    + V+ L +N    +  N      +         + L  N      + 
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 583 TRYFQNLKA 591
              F+ +  
Sbjct: 312 PSTFRCVYV 320

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 43/328 (13%), Positives = 104/328 (31%), Gaps = 44/328 (13%)

Query: 399 NLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
           +LR +      L+     LPP      + NNK+T      F     +  + L NN +S  
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 459 IPECLVDSITLIWLDLHLNSFNGSIPQISANG-SGLVNLILNDNQFEGPLPQSLANCSRL 517
            P      + L  L L  N     + ++       L  L +++N+            +++
Sbjct: 92  SPGAFAPLVKLERLYLSKNQ----LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 518 QVLNVANNRIDDTF--PHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRN 575
            V+ +  N +  +         + +L  + +       +      + + P L  L L  N
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-----PQGLPPSLTELHLDGN 202

Query: 576 EFTGVLPTRYFQNLKAMMR---GSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIF 632
           + T  +     + L  + +     N     +  +        +      +          
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFN----SISAVDN-----GSLANTPHL---------- 242

Query: 633 LVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG------RIPSSLRNLTVLESLDLS 686
             +  ++N+   ++P  +     ++++   +N+++         P           + L 
Sbjct: 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 687 SNRL-VGQIPTQL-TSLNFLSKLNLSHN 712
           SN +   +I       +   + + L + 
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 60/345 (17%), Positives = 103/345 (29%), Gaps = 76/345 (22%)

Query: 353 LEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNL 409
              L L  NKI       F ++    L+ L L +N ++ +      PL  L  L L  N 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKN--LHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 410 LQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSL-SGPIPE-CLVDSI 467
           L+     +P  L    +  N++T      F     +  ++L  N L S  I         
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 468 TLIWLDLHLNSFNGSIPQISANG-SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNR 526
            L ++ +   +    I  I       L  L L+ N+       SL   + L  L ++ N 
Sbjct: 172 KLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 527 IDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYF 586
           I                  + +                P LR L L+ N+   V      
Sbjct: 228 ISA----------------VDNGSLANT----------PHLRELHLNNNKLVKV--PGGL 259

Query: 587 QNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQI 646
            + K                            ++ + +  N +S     DF         
Sbjct: 260 ADHKY---------------------------IQVVYLHNNNISAIGSNDFCP------- 285

Query: 647 PEVVGKLNLLKMLNFSHNHLTGRI--PSSLRNLTVLESLDLSSNR 689
           P    K      ++   N +      PS+ R + V  ++ L + +
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  131 bits (332), Expect = 4e-34
 Identities = 59/245 (24%), Positives = 92/245 (37%), Gaps = 14/245 (5%)

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNL--VGGIPDSFVNLTQ 206
           +P  +      T L L  N            L QL  L+L  N L   G    S    T 
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 207 LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
           L +LDLS+N +   + S   GL  L  L    ++L       +F  L  L  + +     
Sbjct: 80  LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 267 TGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANS 325
                + IF  L +L  ++++ N+   +    +F  L+NL +L LSQ +L    +L   +
Sbjct: 139 R-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---EQLSPTA 194

Query: 326 --TFPKLLKLGLSACNISEFPD-FLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNL 382
             +   L  L +S  N         +  + L+ L  S N I              +L  L
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFL 253

Query: 383 NLSDN 387
           NL+ N
Sbjct: 254 NLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  123 bits (311), Expect = 4e-31
 Identities = 59/265 (22%), Positives = 108/265 (40%), Gaps = 15/265 (5%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
           S T +  ++   +  +P+ I   +    L+L  N    +      G+ + LT+L +L LS
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSSAT--RLELESNKLQSLPH----GVFDKLTQLTKLSLS 60

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIP- 174
              +S           ++SL YL L+  N +  + ++   L QL  L   +++       
Sbjct: 61  SNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 119

Query: 175 SFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPS-CLKGLRNLVT 233
           S    L+ L YL++   +        F  L+ L  L ++ N             LRNL  
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 234 LRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSG 292
           L LS   L   +    F  L  L+V+++  N F  S+ +  ++ L +L  +  S N++  
Sbjct: 180 LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM- 236

Query: 293 HIELCMFARL-KNLQYLYLSQNRLS 316
             +         +L +L L+QN  +
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  116 bits (292), Expect = 1e-28
 Identities = 61/263 (23%), Positives = 102/263 (38%), Gaps = 15/263 (5%)

Query: 8   GLDLSCSWLH-GSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNS- 65
           G ++ C+     S+P+     +      L L SN    SL    F +L  LT L+LS++ 
Sbjct: 9   GTEIRCNSKGLTSVPTG----IPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNG 63

Query: 66  -YFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVL 124
             F G         + +  LDLS N  + + S         L +L+ L     ++  +  
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQMSE 118

Query: 125 DYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS-FLSHLKQL 183
                +L + L YL ++  +           L  L  L ++ N F  +      + L+ L
Sbjct: 119 FSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 184 YYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNG 243
            +L+L Q  L    P +F +L+ L  L++S N          K L +L  L  S N +  
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

Query: 244 TIPSWLFTVLPYLEVIHLRDNRF 266
           +    L      L  ++L  N F
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 64/300 (21%), Positives = 97/300 (32%), Gaps = 58/300 (19%)

Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS-V 317
           I       T S+P+ I    + T + L SN L   +   +F +L  L  L LS N LS  
Sbjct: 12  IRCNSKGLT-SVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 318 NTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP--NWFWDIG 375
                ++     L  L LS   +          ++LE L    + +  ++   + F  + 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLR 126

Query: 376 KDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLT 432
              L  L++S              L +L  L +  N  Q +        IF  + N    
Sbjct: 127 N--LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF----LPDIFTELRN---- 176

Query: 433 GEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSG 492
                       + F+DLS   L                  L   +FN          S 
Sbjct: 177 ------------LTFLDLSQCQLE----------------QLSPTAFNSL--------SS 200

Query: 493 LVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELL-VLILRSNKF 551
           L  L ++ N F           + LQVL+ + N I  +    L   P  L  L L  N F
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 55/300 (18%), Positives = 94/300 (31%), Gaps = 66/300 (22%)

Query: 427 SNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLN--SFNGSIP 484
           ++  LT  +P    ++     ++L +N L             L  L L  N  SF G   
Sbjct: 15  NSKGLT-SVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71

Query: 485 QISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPH-WLAQLPELLV 543
           Q     + L  L L+ N     +  +     +L+ L+  ++ +           L  L+ 
Sbjct: 72  QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 544 LILRSNK--------FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRG 595
           L +            F GL            L +L ++ N F        F  L+ +   
Sbjct: 131 LDISHTHTRVAFNGIFNGL----------SSLEVLKMAGNSFQENFLPDIFTELRNLT-- 178

Query: 596 SNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNL 655
                                                  +D S  + E   P     L+ 
Sbjct: 179 --------------------------------------FLDLSQCQLEQLSPTAFNSLSS 200

Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSL-NFLSKLNLSHNQL 714
           L++LN SHN+         + L  L+ LD S N ++     +L    + L+ LNL+ N  
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGR--IPSSLRNLTVLESLDLSSNRLV 691
            ++  SN+ +     V  KL  L  L+ S N L+ +     S    T L+ LDLS N ++
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 692 GQIPTQLTSLNFLSKLNLSHNQLEGPIPQGP 722
             + +    L  L  L+  H+ L+       
Sbjct: 92  -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  127 bits (322), Expect = 7e-33
 Identities = 61/230 (26%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPA-SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187
             + ++   + L G N I  +PA S      LT L L  N  +    +  + L  L  L+
Sbjct: 28  VGIPAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 188 LEQNNLVGGIP-DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIP 246
           L  N  +  +   +F  L +L  L L    L    P   +GL  L  L L  N+L   +P
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP 145

Query: 247 SWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNL 305
              F  L  L  + L  NR + S+P   F  L +L  + L  N ++ H+    F  L  L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRL 203

Query: 306 QYLYLSQNRLSVNTKLDANSTFPKLLKLGLSA------CNISEFPDFLRS 349
             LYL  N LS     +A +    L  L L+       C       +L+ 
Sbjct: 204 MTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  115 bits (289), Expect = 2e-28
 Identities = 59/256 (23%), Positives = 90/256 (35%), Gaps = 35/256 (13%)

Query: 160 TSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG 219
            + S         +P  +        + L  N +      SF     L+ L L  N L  
Sbjct: 14  VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 220 RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LV 278
              +   GL  L  L LS N+   ++    F  L  L  +HL        +   +F  L 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 279 NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSAC 338
            L  + L  N L   +    F  L NL +L+L  NR+S    +     F  L        
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS---VPER-AFRGL-------- 176

Query: 339 NISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---V 395
                         L+ L L +N++    P+ F D+G+  L  L L  N L+ +      
Sbjct: 177 ------------HSLDRLLLHQNRVAHVHPHAFRDLGR--LMTLYLFANNLSALPTEALA 222

Query: 396 PLKNLRFLDLRSNLLQ 411
           PL+ L++L L  N   
Sbjct: 223 PLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  108 bits (271), Expect = 4e-26
 Identities = 47/238 (19%), Positives = 82/238 (34%), Gaps = 36/238 (15%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
           +   + L  +  S    +       +  L L  N   RI++  + GL             
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL------------- 79

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPAS-LANLPQLTSLSLSYNHFSGHIP 174
                            + L  L L+    +  +  +    L +L +L L        + 
Sbjct: 80  -----------------ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG 121

Query: 175 S-FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVT 233
                 L  L YL L+ N L     D+F +L  L+ L L  N+++       +GL +L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 234 LRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
           L L  N +   +    F  L  L  ++L  N  + ++P+     L  L  +RL+ N  
Sbjct: 182 LLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 49/215 (22%), Positives = 67/215 (31%), Gaps = 56/215 (26%)

Query: 29  LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSK 88
           L  LE L+L  N    S+  + F  L  L  L+L       ++                 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP--------------- 122

Query: 89  NDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGP 148
                       GL   L  L+ L L +                           N +  
Sbjct: 123 ------------GLFRGLAALQYLYLQD---------------------------NALQA 143

Query: 149 IPA-SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQL 207
           +P  +  +L  LT L L  N  S         L  L  L L QN +    P +F +L +L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 208 SFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
             L L  N L+      L  LR L  LRL+ N   
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 51/288 (17%), Positives = 77/288 (26%), Gaps = 64/288 (22%)

Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
            C  C   P          L   +P  +        + LH N  +            L  
Sbjct: 5   ACV-CYNEPKVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANN-RIDDTFPHWLAQLPELLVLILRSNK---- 550
           L L+ N        +    + L+ L++++N ++    P     L  L  L L        
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 551 ----FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYM 606
               F GL            L+ L L  N     LP   F++L  +              
Sbjct: 121 GPGLFRGL----------AALQYLYLQDNALQ-ALPDDTFRDLGNLTH------------ 157

Query: 607 HRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHL 666
                                       +    NR           L+ L  L    N +
Sbjct: 158 ----------------------------LFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 667 TGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714
               P + R+L  L +L L +N L       L  L  L  L L+ N  
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 41/215 (19%), Positives = 69/215 (32%), Gaps = 9/215 (4%)

Query: 382 LNLSDNFLTDVEQVPLKNLRFLDLRSNL---LQGSVMVLPPRLIFFSISNNKLTGEIPCS 438
            +     L  V        + + L  N    +  +       L    + +N L      +
Sbjct: 16  TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 439 FCTAAPIEFIDLSNNSLSGPIP-ECLVDSITLIWLDLHLNSFNGSIPQ-ISANGSGLVNL 496
           F   A +E +DLS+N+    +          L  L L        +   +    + L  L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134

Query: 497 ILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIG 556
            L DN  +     +  +   L  L +  NRI          L  L  L+L  N+   +  
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 557 NTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKA 591
           +    +   +L  L L  N  +  LPT     L+A
Sbjct: 195 HAFRDL--GRLMTLYLFANNLS-ALPTEALAPLRA 226

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 59/315 (18%), Positives = 90/315 (28%), Gaps = 99/315 (31%)

Query: 262 RDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKL 321
                  ++P  I        I L  N +S H+    F   +NL  L+L  N L+     
Sbjct: 19  PQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA----- 69

Query: 322 DANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP-NWFWDIGKDTLY 380
                             I            LE L LS+N     +    F         
Sbjct: 70  -----------------RID--AAAFTGLALLEQLDLSDNAQLRSVDPATFHG------- 103

Query: 381 NLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFC 440
                           L  L  L L    LQ     L P L F  ++             
Sbjct: 104 ----------------LGRLHTLHLDRCGLQ----ELGPGL-FRGLAA------------ 130

Query: 441 TAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILND 500
               ++++ L +N+L                  L  ++F             L +L L+ 
Sbjct: 131 ----LQYLYLQDNALQ----------------ALPDDTFRDL--------GNLTHLFLHG 162

Query: 501 NQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDA 560
           N+      ++      L  L +  NR+    PH    L  L+ L L +N    L   T+A
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL--PTEA 220

Query: 561 RVIFPKLRILDLSRN 575
                 L+ L L+ N
Sbjct: 221 LAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
            I    NR              L +L    N L     ++   L +LE LDLS N  +  
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 694 IPTQ-LTSLNFLSKLNLSHNQLE 715
           +       L  L  L+L    L+
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 31/166 (18%)

Query: 563 IFPKLRILDLSRNEFTGVLPTRYFQNLKAMMR----GSNTSTVQVQYMHRFGRYYSAFFT 618
           I    + + L  N  +  +P   F+  + +       +  + +             AF  
Sbjct: 30  IPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAA----------AFTG 78

Query: 619 LKGIDVEMNILSIFLVIDFSSNRFEGQIPEVV-GKLNLLKMLNFSHNHLTGRIPS-SLRN 676
           L  ++           +D S N     +       L  L  L+     L   +     R 
Sbjct: 79  LALLEQ----------LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 127

Query: 677 LTVLESLDLSSNRLVGQIPTQ-LTSLNFLSKLNLSHNQLEGPIPQG 721
           L  L+ L L  N L   +P      L  L+ L L  N++   +P+ 
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS-VPER 171

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  128 bits (325), Expect = 7e-33
 Identities = 64/284 (22%), Positives = 100/284 (35%), Gaps = 39/284 (13%)

Query: 157 PQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQ 216
           P  T L L  N  S         L+ LY L L  N +      +F  L +L  L +S N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 217 LTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT-GSIPSTIF 275
           L   +P  L    +LV LR+  N +   +P  +F+ L  +  I +  N           F
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 276 ELVNLTSIRLSSNNLSG--------------------HIELCMFARLKNLQYLYLSQNRL 315
           + + L  +R+S   L+G                     IEL    R   L  L L  N++
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 316 SVNTKLDANS--TFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWD 373
                ++  S    P L +L L    +S  P  L     L+ + L  N I     N F  
Sbjct: 230 ---RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286

Query: 374 IGKDT----LYNLNLSDNFLTDVEQVP-----LKNLRFLDLRSN 408
           +G          ++L +N +   E  P     + +   +   + 
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  124 bits (313), Expect = 3e-31
 Identities = 65/306 (21%), Positives = 115/306 (37%), Gaps = 31/306 (10%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
           ++P      + P    L+L +ND  S L    F  L  L  L L N+  S       S L
Sbjct: 47  AVPKE----ISPDTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
            K+  L +SKN  V I   +        + L EL + +  +  +      + L  +++ +
Sbjct: 102 RKLQKLYISKNHLVEIPPNL-------PSSLVELRIHDNRIRKV-PKGVFSGL-RNMNCI 152

Query: 139 HLTGCNLI--GPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG 196
            + G N +          +  +L  L +S    +  IP  L   + L  L+L+ N +   
Sbjct: 153 EM-GGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAI 208

Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
             +  +  ++L  L L  NQ+       L  L  L  L L  N L+  +P+ L   L  L
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD-LKLL 266

Query: 257 EVIHLRDNRFTGSIPSTIF-------ELVNLTSIRLSSNNLS-GHIELCMFARLKNLQYL 308
           +V++L  N  T  +    F       +      I L +N +    ++   F  + +   +
Sbjct: 267 QVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

Query: 309 YLSQNR 314
                +
Sbjct: 326 QFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  121 bits (306), Expect = 2e-30
 Identities = 73/312 (23%), Positives = 110/312 (35%), Gaps = 31/312 (9%)

Query: 158 QLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQL 217
            L  +  S       +P  +S       L+L+ N++     D F  L  L  L L  N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 218 TGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE- 276
           +         LR L  L +S N L   IP  L      L  + + DNR    +P  +F  
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIR-KVPKGVFSG 145

Query: 277 LVNLTSIRLSSNNL-SGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGL 335
           L N+  I +  N L +   E   F  L  L YL +S+ +L   T +  +     L +L L
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL---TGIPKD-LPETLNELHL 200

Query: 336 SACNISEFPDF-LRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ 394
               I       L    +L  L L  N+I          +    L  L+L +N L+ V  
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT--LRELHLDNNKLSRVPA 258

Query: 395 V--PLKNLRFLDLRSNLLQ---------GSVMVLPPRLIFFSISNNKLTGEI--PCSFCT 441
               LK L+ + L +N +              V        S+ NN +      P +F  
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

Query: 442 AAPIEFIDLSNN 453
                 I   N 
Sbjct: 319 VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 54/319 (16%), Positives = 95/319 (29%), Gaps = 77/319 (24%)

Query: 399 NLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
           +LR +      L+     + P      + NN ++      F     +  + L NN +S  
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 459 IPECLVDSITLIWLDLHLNSFNGSIPQISANG-SGLVNLILNDNQFEGPLPQSLANCSRL 517
             +       L  L +  N     + +I  N  S LV L ++DN+         +    +
Sbjct: 94  HEKAFSPLRKLQKLYISKNH----LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 518 QVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEF 577
             + +  N ++++                    F GL           KL  L +S  + 
Sbjct: 150 NCIEMGGNPLENSG--------------FEPGAFDGL-----------KLNYLRISEAKL 184

Query: 578 TGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDF 637
           TG+ P    + L  +                                             
Sbjct: 185 TGI-PKDLPETLNEL-------------------------------------------HL 200

Query: 638 SSNRFEGQIPEVV-GKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPT 696
             N+ +  I      + + L  L   HN +      SL  L  L  L L +N+L  ++P 
Sbjct: 201 DHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258

Query: 697 QLTSLNFLSKLNLSHNQLE 715
            L  L  L  + L  N + 
Sbjct: 259 GLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 59/344 (17%), Positives = 112/344 (32%), Gaps = 75/344 (21%)

Query: 353 LEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNL 409
              L L  N I     + F  +    LY L L +N ++ + +    PL+ L+ L +  N 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQH--LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 410 LQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSL-SGPIPECLVDSIT 468
           L      LP  L+   I +N++       F     +  I++  N L +        D + 
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 469 LIWLDLHLNSFNGSIPQISANG-SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRI 527
           L +L +        +  I  +    L  L L+ N+ +    + L   S+L  L + +N+I
Sbjct: 174 LNYLRISEAK----LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 528 DDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQ 587
                             + +     L          P LR L L  N+ + V       
Sbjct: 230 RM----------------IENGSLSFL----------PTLRELHLDNNKLSRV--PAGLP 261

Query: 588 NLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIP 647
           +LK                            L+ + +  N ++   V DF    F  +  
Sbjct: 262 DLKL---------------------------LQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 648 EVVGKLNLLKMLNFSHNHLTGRI--PSSLRNLTVLESLDLSSNR 689
                      ++  +N +      P++ R +T   ++   + +
Sbjct: 295 Y-------YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  130 bits (328), Expect = 3e-32
 Identities = 67/248 (27%), Positives = 106/248 (42%), Gaps = 17/248 (6%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI-SQ 77
            +P      +      LNL  N+    + +  F  L  L  L L  +    QI     + 
Sbjct: 68  EVPQG----IPSNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNG 121

Query: 78  LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSY 137
           L+ + +L+L  N    I S    G  E L+KL+EL L    + +I   Y+   + S L  
Sbjct: 122 LASLNTLELFDNWLTVIPS----GAFEYLSKLRELWLRNNPIESI-PSYAFNRVPS-LMR 175

Query: 138 LHLTGCNLIGPIPA-SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG 196
           L L     +  I   +   L  L  L+L   +    +P+  + L  L  L +  N+    
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNL-TPLVGLEELEMSGNHFPEI 233

Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
            P SF  L+ L  L +  +Q++    +   GL +LV L L+ N+L+ ++P  LFT L YL
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYL 292

Query: 257 EVIHLRDN 264
             +HL  N
Sbjct: 293 VELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  122 bits (307), Expect = 1e-29
 Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 11/237 (4%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPA-SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187
             + S+  YL+L   N I  I A +  +L  L  L L  N          + L  L  L 
Sbjct: 71  QGIPSNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 188 LEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
           L  N L      +F  L++L  L L  N +          + +L+ L L        I  
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 248 WLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY 307
             F  L  L+ ++L        +P  +  LV L  + +S N+    I    F  L +L+ 
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKK 246

Query: 308 LYLSQNRLSVNTKLDAN--STFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSEN 361
           L++  +++   + ++ N       L++L L+  N+S  P D       L  L L  N
Sbjct: 247 LWVMNSQV---SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  116 bits (292), Expect = 1e-27
 Identities = 73/325 (22%), Positives = 111/325 (34%), Gaps = 76/325 (23%)

Query: 157 PQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQ 216
            Q + +  +    S  +P  +       YLNL +NN+     D+F +L  L  L L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 217 LTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE 276
           +         GL +L TL L  N L   IPS  F  L  L  + LR+N    SIPS  F 
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168

Query: 277 -LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGL 335
            + +L  + L       +I    F  L NL+YL L                         
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC---------------------- 206

Query: 336 SACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV 395
              NI + P+       LE L++S N      P  F  +    L  L + ++ ++ +E+ 
Sbjct: 207 ---NIKDMPNL-TPLVGLEELEMSGNHFPEIRPGSFHGLSS--LKKLWVMNSQVSLIERN 260

Query: 396 PLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSL 455
               L  L                                            ++L++N+L
Sbjct: 261 AFDGLASL------------------------------------------VELNLAHNNL 278

Query: 456 SGPIPECLVDSITLIWLDLHLNSFN 480
           S    +       L+ L LH N +N
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (269), Expect = 9e-25
 Identities = 64/216 (29%), Positives = 89/216 (41%), Gaps = 12/216 (5%)

Query: 29  LPYLETLNLGSNDFNSSLISSG-FGRLISLTHLNLSNSYFSGQIPSEI-SQLSKMLSLDL 86
           L +LE L LG N  +   I  G F  L SL  L L +++ +  IPS     LSK+  L L
Sbjct: 98  LHHLEVLQLGRN--SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL 154

Query: 87  SKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLI 146
             N    I S  +  +      L  L L E+     + + +   L + L YL+L     I
Sbjct: 155 RNNPIESIPSYAFNRV----PSLMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGM-CNI 208

Query: 147 GPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQ 206
             +P  L  L  L  L +S NHF    P     L  L  L +  + +     ++F  L  
Sbjct: 209 KDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267

Query: 207 LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
           L  L+L+ N L+         LR LV L L  N  N
Sbjct: 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 56/296 (18%), Positives = 95/296 (32%), Gaps = 52/296 (17%)

Query: 448 IDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPL 507
           +  +   LS  +P+ +       +L+L  N+          +   L  L L  N      
Sbjct: 59  VVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 508 PQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKL 567
             +    + L  L + +N +          L +L  L LR+N    +   + A    P L
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI--PSYAFNRVPSL 173

Query: 568 RILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMN 627
             LDL   +    +    F+ L                             LK +++ M 
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFN---------------------------LKYLNLGMC 206

Query: 628 ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSS 687
            +                +P +   L  L+ L  S NH     P S   L+ L+ L + +
Sbjct: 207 NIK--------------DMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 688 NRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPL 743
           +++          L  L +LNL+HN L   +P       F    Y+  L L   P 
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSS-LPHD----LFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 62/278 (22%), Positives = 95/278 (34%), Gaps = 38/278 (13%)

Query: 304 NLQYLYLSQNRL-SVNTKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSEN 361
               +  ++  L  V   + +N+       L L   NI     D  R    LE LQL  N
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNTR-----YLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 362 KIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQGSVMVLP 418
            I       F  +    L  L L DN+LT +       L  LR L LR+N ++     +P
Sbjct: 110 SIRQIEVGAFNGLAS--LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE----SIP 163

Query: 419 PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLS-NNSLSGPIPECLVDSITLIWLDLHLN 477
               F  + +                +  +DL     L             L +L+L + 
Sbjct: 164 SY-AFNRVPS----------------LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 478 SFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQ 537
           +    +P ++    GL  L ++ N F    P S    S L+ L V N+++     +    
Sbjct: 207 NIK-DMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 538 LPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRN 575
           L  L+ L L  N    L  +         L  L L  N
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTP--LRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 47/233 (20%), Positives = 80/233 (34%), Gaps = 42/233 (18%)

Query: 382 LNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQGSVMVLPP-------RLIFFSISNNKL 431
           LNL +N +  ++      L +L  L L  N ++     +          L    + +N L
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR----QIEVGAFNGLASLNTLELFDNWL 135

Query: 432 TGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANG- 490
           T     +F   + +  + L NN +            +L+ LDL        +  IS    
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL---GELKKLEYISEGAF 192

Query: 491 SGLVNL---ILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILR 547
            GL NL    L     +     +L     L+ L ++ N   +  P     L  L  L + 
Sbjct: 193 EGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 548 SNK--------FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAM 592
           +++        F GL            L  L+L+ N  +  LP   F  L+ +
Sbjct: 251 NSQVSLIERNAFDGL----------ASLVELNLAHNNLS-SLPHDLFTPLRYL 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  128 bits (324), Expect = 8e-32
 Identities = 68/248 (27%), Positives = 106/248 (42%), Gaps = 17/248 (6%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI-SQ 77
            +P      +      LNL  N     +  + F  L  L  L LS ++    I     + 
Sbjct: 57  EVPDG----ISTNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNG 110

Query: 78  LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSY 137
           L+ + +L+L  N    I +    G    L+KLKEL L    + +I   Y+   + S L  
Sbjct: 111 LANLNTLELFDNRLTTIPN----GAFVYLSKLKELWLRNNPIESI-PSYAFNRIPS-LRR 164

Query: 138 LHLTGCNLIGPIPA-SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG 196
           L L     +  I   +   L  L  L+L+  +    IP+  + L +L  L+L  N+L   
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNL-TPLIKLDELDLSGNHLSAI 222

Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
            P SF  L  L  L +  +Q+     +    L++LV + L+ N+L   +P  LFT L +L
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHL 281

Query: 257 EVIHLRDN 264
           E IHL  N
Sbjct: 282 ERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  123 bits (310), Expect = 4e-30
 Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 58/303 (19%)

Query: 157 PQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQ 216
            Q + +     +    +P  +S       LNL +N +     +SF +L  L  L LS N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 217 LTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE 276
           +         GL NL TL L  N L  TIP+  F  L  L+ + LR+N    SIPS  F 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 277 -LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGL 335
            + +L  + L       +I    F  L NL+YL L+                        
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC---------------------- 195

Query: 336 SACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ- 394
              N+ E P+      +L+ L LS N +    P  F  +    L  L +  + +  +E+ 
Sbjct: 196 ---NLREIPNL-TPLIKLDELDLSGNHLSAIRPGSFQGLMH--LQKLWMIQSQIQVIERN 249

Query: 395 --VPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSN 452
               L++L  ++L  N L     +LP  L                 F     +E I L +
Sbjct: 250 AFDNLQSLVEINLAHNNLT----LLPHDL-----------------FTPLHHLERIHLHH 288

Query: 453 NSL 455
           N  
Sbjct: 289 NPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  123 bits (310), Expect = 5e-30
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 9/236 (3%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
             +S++   L+L    +      S  +L  L  L LS NH         + L  L  L L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW 248
             N L      +FV L++L  L L  N +          + +L  L L        I   
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 249 LFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL 308
            F  L  L  ++L        IP  +  L+ L  + LS N+LS  I    F  L +LQ L
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKL 236

Query: 309 YLSQNRLSVNTKLDAN--STFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSEN 361
           ++ Q+++     ++ N       L+++ L+  N++  P D       LE + L  N
Sbjct: 237 WMIQSQI---QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (267), Expect = 1e-24
 Identities = 63/215 (29%), Positives = 93/215 (43%), Gaps = 10/215 (4%)

Query: 29  LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI-SQLSKMLSLDLS 87
           L +LE L L  N    ++    F  L +L  L L ++  +  IP+     LSK+  L L 
Sbjct: 87  LRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR 144

Query: 88  KNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIG 147
            N    I S  +  +      L+ L L E+   + + + +   LS+ L YL+L  CNL  
Sbjct: 145 NNPIESIPSYAFNRI----PSLRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAMCNLRE 199

Query: 148 PIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQL 207
            IP  L  L +L  L LS NH S   P     L  L  L + Q+ +     ++F NL  L
Sbjct: 200 -IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 208 SFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
             ++L+ N LT         L +L  + L  N  N
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 4e-15
 Identities = 52/271 (19%), Positives = 90/271 (33%), Gaps = 31/271 (11%)

Query: 448 IDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQIS-ANGSGLVNLILNDNQFEGP 506
           +     +L   +P+ +  +  L  L+LH N     I   S  +   L  L L+ N     
Sbjct: 48  VICVRKNLRE-VPDGISTNTRL--LNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPK 566
              +    + L  L + +NR+          L +L  L LR+N    +   + A    P 
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI--PSYAFNRIPS 161

Query: 567 LRILDLSRNEFTGVLPTRYFQNLKAMMR---GSNTSTVQVQYMHRFGRYYSAFFTLKGID 623
           LR LDL   +    +    F+ L  +             ++ +                 
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC----NLREIPNLTP------------ 205

Query: 624 VEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESL 683
                L     +D S N      P     L  L+ L    + +     ++  NL  L  +
Sbjct: 206 -----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 684 DLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714
           +L+ N L        T L+ L +++L HN  
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 58/263 (22%), Positives = 90/263 (34%), Gaps = 68/263 (25%)

Query: 462 CLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLN 521
           C      +I +  +L      I       +    L L++NQ +     S  +   L++L 
Sbjct: 41  CSNQFSKVICVRKNLREVPDGIS------TNTRLLNLHENQIQIIKVNSFKHLRHLEILQ 94

Query: 522 VANNRIDDTFPHWLAQLPELLVLILRSNK--------FYGLIGNTDARVIFPKLRILDLS 573
           ++ N I          L  L  L L  N+        F  L           KL+ L L 
Sbjct: 95  LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL----------SKLKELWLR 144

Query: 574 RNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDV-EMNILSIF 632
            N     +P+  F  + +                           L+ +D+ E+  LS  
Sbjct: 145 NNPIE-SIPSYAFNRIPS---------------------------LRRLDLGELKRLS-- 174

Query: 633 LVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVG 692
                S   FEG        L+ L+ LN +  +L   IP+ L  L  L+ LDLS N L  
Sbjct: 175 ---YISEGAFEG--------LSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSA 221

Query: 693 QIPTQLTSLNFLSKLNLSHNQLE 715
             P     L  L KL +  +Q++
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 57/256 (22%), Positives = 87/256 (33%), Gaps = 15/256 (5%)

Query: 327 FPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD 386
             +  K+     N+ E PD +        L L EN+I     N F  +    L  L LS 
Sbjct: 42  SNQFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRH--LEILQLSR 97

Query: 387 NFLTDVEQ---VPLKNLRFLDLRSNLLQG---SVMVLPPRLIFFSISNNKLTGEIPCSFC 440
           N +  +E      L NL  L+L  N L        V   +L    + NN +      +F 
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

Query: 441 TAAPIEFIDLS-NNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILN 499
               +  +DL     LS            L +L+L + +    IP ++     L  L L+
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLT-PLIKLDELDLS 215

Query: 500 DNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTD 559
            N      P S      LQ L +  ++I     +    L  L+ + L  N    L  +  
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 560 ARVIFPKLRILDLSRN 575
                  L  + L  N
Sbjct: 276 TP--LHHLERIHLHHN 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  124 bits (312), Expect = 5e-31
 Identities = 63/277 (22%), Positives = 110/277 (39%), Gaps = 21/277 (7%)

Query: 152 SLANLPQ-----LTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQ 206
           SL ++P      + SL LS N  +    S L     L  L L  N +     DSF +L  
Sbjct: 42  SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101

Query: 207 LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
           L  LDLS+N L+    S  K L +L  L L GN       + LF+ L  L+++ + +   
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 267 TGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL-SVNTKLDAN 324
              I    F  L  L  + + +++L    E      ++N+ +L L   +   +       
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 325 STFPKLLKLG---LSACNISEFP----DFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKD 377
           ++  + L+L    L   + SE      + L  +     +++++  ++ ++      I   
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISG- 278

Query: 378 TLYNLNLSDNFLTDVEQV---PLKNLRFLDLRSNLLQ 411
            L  L  S N L  V       L +L+ + L +N   
Sbjct: 279 -LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  110 bits (277), Expect = 2e-26
 Identities = 59/283 (20%), Positives = 109/283 (38%), Gaps = 25/283 (8%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI-SQ 77
           SIPS     L   +++L+L +N   + + +S   R ++L  L L+++  +  I  +  S 
Sbjct: 45  SIPSG----LTEAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSS 98

Query: 78  LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSY 137
           L  +  LDLS N    + S       + L+ L  L L      T+  + SL +  + L  
Sbjct: 99  LGSLEHLDLSYNYLSNLSS----SWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQI 153

Query: 138 LHLTGCNLIGPIPA-SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG 196
           L +   +    I     A L  L  L +  +    + P  L  ++ + +L L     +  
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 197 IPDSFVNLTQLSFLDLSWNQLTG----RLPSC----LKGLRNLVTLRLSGNSLNGTIPSW 248
           +       + +  L+L    L       L +     L        ++++  SL   +   
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-- 271

Query: 249 LFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
           L   +  L  +    N+   S+P  IF+ L +L  I L +N  
Sbjct: 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 95.6 bits (238), Expect = 2e-21
 Identities = 61/390 (15%), Positives = 111/390 (28%), Gaps = 90/390 (23%)

Query: 140 LTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPD 199
           +   +       +  +  +      S    +  IPS L+  + +  L+L  N +      
Sbjct: 14  IISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNS 70

Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
                  L  L L+ N +          L +L  L LS N L   + S  F  L  L  +
Sbjct: 71  DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFL 129

Query: 260 HLRDNRFTGSIPSTIF-ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           +L  N +     +++F  L  L  +R+ + +    I+   FA L  L+ L +  + L   
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL--- 186

Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT 378
              +  S                     L+S   +  L L   +    +   F D+    
Sbjct: 187 QSYEPKS---------------------LKSIQNVSHLILHMKQHI-LLLEIFVDV---- 220

Query: 379 LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCS 438
                               ++  L+LR   L              S             
Sbjct: 221 ------------------TSSVECLELRDTDLDTFHFSELSTGETNS------------- 249

Query: 439 FCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLIL 498
                                   L+   T   + +   S    + ++    SGL+ L  
Sbjct: 250 ------------------------LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEF 284

Query: 499 NDNQFEGPLPQSLANCSRLQVLNVANNRID 528
           + NQ +          + LQ + +  N  D
Sbjct: 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 44/247 (17%), Positives = 74/247 (29%), Gaps = 63/247 (25%)

Query: 29  LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSK 88
           L  L  LNL  N + +   +S F  L  L  L + N     +I                 
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--------------- 167

Query: 89  NDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGP 148
                            LT L+E                          L +   +L   
Sbjct: 168 ------------KDFAGLTFLEE--------------------------LEIDASDLQSY 189

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVG--------GIPDS 200
            P SL ++  ++ L L        +  F+     +  L L   +L          G  +S
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
            +       + ++   L  ++   L  +  L+ L  S N L  ++P  +F  L  L+ I 
Sbjct: 250 LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW 307

Query: 261 LRDNRFT 267
           L  N + 
Sbjct: 308 LHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 47/271 (17%), Positives = 90/271 (33%), Gaps = 51/271 (18%)

Query: 482 SIPQ-ISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPE 540
           SIP  ++     + +L L++N+        L  C  LQ L + +N I+       + L  
Sbjct: 45  SIPSGLTEA---VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101

Query: 541 LLVLILRSNK--------FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAM 592
           L  L L  N         F  L            L  L+L  N +  +  T  F +L  +
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPL----------SSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 593 MRGSNTSTVQVQYMHRFGRYYSAF---FTLKGIDVEMNILSIF-----------LVIDFS 638
                 +      + R       F     L+ ++++ + L  +             +   
Sbjct: 152 QILRVGNMDTFTKIQR-----KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 639 SNRFEGQIPEVVGKLNLLKMLNFSHNHLTG----RIPS----SLRNLTVLESLDLSSNRL 690
             +    +   V   + ++ L      L       + +    SL       ++ ++   L
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

Query: 691 VGQIPTQLTSLNFLSKLNLSHNQLEGPIPQG 721
             Q+   L  ++ L +L  S NQL+  +P G
Sbjct: 267 F-QVMKLLNQISGLLELEFSRNQLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 56/319 (17%), Positives = 109/319 (34%), Gaps = 68/319 (21%)

Query: 378 TLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGE 434
            + +L+LS+N +T +         NL+ L L SN +      +     F S+ +      
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN----TIEEDS-FSSLGS------ 101

Query: 435 IPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT-LIWLDLHLNSFNGSIPQISANGSGL 493
                     +E +DLS N LS  +       ++ L +L+L  N +  ++ + S   S L
Sbjct: 102 ----------LEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLF-SHL 148

Query: 494 VNL----ILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSN 549
             L    + N + F     +  A  + L+ L +  + +    P  L  +  +  LIL   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 550 KFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRF 609
           +   L        +   +  L+L   +           +   +  G   S ++       
Sbjct: 209 QHILL--LEIFVDVTSSVECLELRDTDLDTF-------HFSELSTGETNSLIK------- 252

Query: 610 GRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGR 669
                                 F  +  +      Q+ +++ +++ L  L FS N L   
Sbjct: 253 -------------------KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSV 292

Query: 670 IPSSLRNLTVLESLDLSSN 688
                  LT L+ + L +N
Sbjct: 293 PDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 52/303 (17%), Positives = 101/303 (33%), Gaps = 43/303 (14%)

Query: 425 SISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIP 484
             S+  L   IP     A  ++ +DLSNN ++      L   + L  L L  N  N +I 
Sbjct: 37  KGSSGSLN-SIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92

Query: 485 QISANG-SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPH-WLAQLPELL 542
           + S +    L +L L+ N             S L  LN+  N           + L +L 
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 543 VLILRSNK---------FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAM- 592
           +L + +           F GL            L  L++  ++       +  ++++ + 
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGL----------TFLEELEIDASDLQ-SYEPKSLKSIQNVS 201

Query: 593 ---MRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEV 649
              +       +   ++            ++ +++    L  F   + S+      I   
Sbjct: 202 HLILHMKQHILLLEIFVDVTSS-------VECLELRDTDLDTFHFSELSTGETNSLI--- 251

Query: 650 VGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNL 709
             K    + +  +   L  ++   L  ++ L  L+ S N+L          L  L K+ L
Sbjct: 252 --KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308

Query: 710 SHN 712
             N
Sbjct: 309 HTN 311

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  126 bits (317), Expect = 7e-31
 Identities = 88/401 (21%), Positives = 149/401 (37%), Gaps = 29/401 (7%)

Query: 157 PQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIP-DSFVNLTQLSFLDLSWN 215
             +  + LS N  +    +  S L+ L +L +EQ      I  ++F  L+ L  L L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 216 QLTGRLPSCLKGLRNLVTLRLSGNSLNGT-IPSWLFTVLPYLEVIHLRDNRFTGSIPSTI 274
           Q          GL NL  L L+  +L+G  +    F  L  LE++ LRDN      P++ 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 275 FE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKL 333
           F  +     + L+ N +   I        +   +  L   RLS  T  D N  +    K 
Sbjct: 150 FLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLL---RLSSITLQDMNEYWLGWEKC 205

Query: 334 GLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWD-IGKDTLYNLNLSDNFLTDV 392
           G                  +  L LS N     +   F+D I    + +L LS+++    
Sbjct: 206 GN-----------PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN--- 251

Query: 393 EQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSN 452
                 +  F D  +   +G   +    +    +S +K+   +   F     +E + L+ 
Sbjct: 252 MGSSFGHTNFKDPDNFTFKG---LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

Query: 453 NSLSGPIPECLVDSIT-LIWLDLHLNSFNGSIPQISANG-SGLVNLILNDNQFEGPLPQS 510
           N ++  I +     +T L+ L+L  N   GSI          L  L L+ N       QS
Sbjct: 309 NEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366

Query: 511 LANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
                 L+ L +  N++         +L  L  + L +N +
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  122 bits (309), Expect = 7e-30
 Identities = 75/410 (18%), Positives = 136/410 (33%), Gaps = 55/410 (13%)

Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
           +P+   ++  +   DLS N +     +    L++L  L++   +    I +  F  L  L
Sbjct: 25  VPELPAHVNYV---DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 257 EVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNL-SGHIELCMFARLKNLQYLYLSQNR 314
            ++ L  N+F   + +  F  L NL  + L+  NL    +    F  L +L+ L L  N 
Sbjct: 82  IILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 315 LSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDI 374
           +    K+   S F  + +                       L L+ NK+         + 
Sbjct: 141 I---KKIQPASFFLNMRR--------------------FHVLDLTFNKVKSICEEDLLNF 177

Query: 375 GKDTLYNLNLSDNFLTDVEQVP-----------LKNLRFLDLRSNLLQGSVMVLPPRLIF 423
                  L LS   L D+ +               ++  LDL  N  +        +  F
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK----ESMAKRFF 233

Query: 424 FSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT---LIWLDLHLNSFN 480
            +I+  K+   I  +             + +   P        +    +   DL  +   
Sbjct: 234 DAIAGTKIQSLILSNSY----NMGSSFGHTNFKDP-DNFTFKGLEASGVKTCDLSKSKIF 288

Query: 481 GSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPE 540
             +  + ++ + L  L L  N+       +    + L  LN++ N +          L +
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348

Query: 541 LLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLK 590
           L VL L  N    L     + +  P L+ L L  N+   V P   F  L 
Sbjct: 349 LEVLDLSYNHIRAL--GDQSFLGLPNLKELALDTNQLKSV-PDGIFDRLT 395

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  122 bits (309), Expect = 7e-30
 Identities = 76/373 (20%), Positives = 129/373 (34%), Gaps = 46/373 (12%)

Query: 22  SNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI-SQLSK 80
           + +S   L  L+ L +        + ++ F  L SL  L L  + F  Q+ +   + L+ 
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLAN 104

Query: 81  MLSLDLSKNDEVRIES-PVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLH 139
           +  L L++     ++   +     + LT L+ LVL + ++  I       N+      L 
Sbjct: 105 LEVLTLTQC---NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLD 160

Query: 140 LTGCNLIGPIPAS-----------LANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
           LT  N +  I              L  L  +T   ++                 +  L+L
Sbjct: 161 LTF-NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219

Query: 189 EQNNLVGGIPDSFVNLTQLS-----FLDLSWNQLTGRLPSCLKGLRN----------LVT 233
             N     +   F +    +      L  S+N  +    +  K   N          + T
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279

Query: 234 LRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSG 292
             LS + +   +   +F+    LE + L  N     I    F  L +L  + LS N L  
Sbjct: 280 CDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG- 336

Query: 293 HIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFP----DFLR 348
            I+  MF  L  L+ L LS N +       +    P L +L L    +   P    D L 
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395

Query: 349 SQDRLEWLQLSEN 361
           S   L+ + L  N
Sbjct: 396 S---LQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  122 bits (309), Expect = 7e-30
 Identities = 82/390 (21%), Positives = 141/390 (36%), Gaps = 52/390 (13%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
            + +++LS +  +    +  S+L  +  L + +         +       L+ L  L L 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ---TPGLVIRNNTFRGLSSLIILKLD 87

Query: 116 EVDMSTI---VLDYSLTNLSSSLSYLHLTGCNLIGPI--PASLANLPQLTSLSLSYNHFS 170
                 +     +  L N    L  L LT CNL G +        L  L  L L  N+  
Sbjct: 88  YNQFLQLETGAFN-GLAN----LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 171 GHIP-SFLSHLKQLYYLNLEQNNLVGGIPDSFVNLT--QLSFLDLSWNQLT--------G 219
              P SF  ++++ + L+L  N +     +  +N      + L LS   L          
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 220 RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTG----------- 268
                     ++ TL LSGN    ++    F  +   ++  L  +               
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 269 SIPSTIF---ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANS 325
              +  F   E   + +  LS + +   +   +F+   +L+ L L+QN +    K+D N 
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI---NKIDDN- 317

Query: 326 TF---PKLLKLGLSACNISEFPDFL-RSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYN 381
            F     LLKL LS   +      +  + D+LE L LS N I   + +  +  G   L  
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFL-GLPNLKE 375

Query: 382 LNLSDNFLTDVEQ---VPLKNLRFLDLRSN 408
           L L  N L  V       L +L+ + L +N
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 9e-20
 Identities = 62/268 (23%), Positives = 102/268 (38%), Gaps = 23/268 (8%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNS-------SLISSGFG--RLISLTHLNLSNSYFSG 69
            I   S    +     L+L  N   S       +     F   RL S+T  +++  +   
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 70  QIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYS-L 128
           +      + + + +LDLS N      +  +   I   TK++ L+LS          ++  
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 129 TNLS---------SSLSYLHLTGCNLIGPIPASL-ANLPQLTSLSLSYNHFSGHIPSFLS 178
            +           S +    L+  + I  +  S+ ++   L  L+L+ N  +    +   
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320

Query: 179 HLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSG 238
            L  L  LNL QN L       F NL +L  LDLS+N +         GL NL  L L  
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380

Query: 239 NSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
           N L  ++P  +F  L  L+ I L  N +
Sbjct: 381 NQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 48/234 (20%), Positives = 75/234 (32%), Gaps = 20/234 (8%)

Query: 27  FLLPYLETLNLGSNDFNS-------SLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLS 79
           F   +   L L S                    +  S+T L+LS + F   +        
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 80  KMLSL-DLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDY-SLTNLS----- 132
               +  L  ++   + S       ++        L    + T  L    +  L      
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296

Query: 133 --SSLSYLHLTGCNLIGPIPA-SLANLPQLTSLSLSYNHFSGHIPSFL-SHLKQLYYLNL 188
             + L  L L   N I  I   +   L  L  L+LS N     I S +  +L +L  L+L
Sbjct: 297 HFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDL 354

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
             N++      SF+ L  L  L L  NQL          L +L  + L  N  +
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 47/303 (15%), Positives = 89/303 (29%), Gaps = 61/303 (20%)

Query: 445 IEFIDLSNNSLSGPIPECLVDSIT-LIWLDLHLNSFNGSIPQISANG-SGLVNLILNDNQ 502
           + ++DLS NS++  + E     +  L +L +   +    I   +  G S L+ L L+ NQ
Sbjct: 32  VNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 503 FEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARV 562
           F      +    + L+VL +    +D                +L  N F  L        
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGA--------------VLSGNFFKPL-------- 128

Query: 563 IFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGI 622
               L +L L  N    + P  +F N++                               +
Sbjct: 129 --TSLEMLVLRDNNIKKIQPASFFLNMRR---------------------------FHVL 159

Query: 623 DVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNL--LKMLNFSHNHLTGRIPSSLRNLTVL 680
           D+  N +                  +    L L  + + + +   L      +    T +
Sbjct: 160 DLTFNKVK-----SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214

Query: 681 ESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCG 740
            +LDLS N     +  +       +K+          +        F+        GL  
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 741 FPL 743
             +
Sbjct: 275 SGV 277

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  124 bits (312), Expect = 5e-30
 Identities = 82/418 (19%), Positives = 156/418 (37%), Gaps = 31/418 (7%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           LDLS + L   I  +        L+ L+L  N F++  I   FG +  L  L LS ++  
Sbjct: 74  LDLSHNKLV-KISCHP----TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSL 128
                 I+ L+    L +        E P     +++       ++   +     +    
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDP---EGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 129 TNLSSSLSYLHLTG------CNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHL-- 180
               ++L   ++        C+    I A L   P+L++L+L+    + +    +  L  
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 181 -KQLYYLNLEQNNLVG-----GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTL 234
              ++Y ++    L G         S  +L  LS   +  +          +   N+   
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 235 RLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHI 294
             + +     +     + +     +   +N  T ++      L  L ++ L  N L    
Sbjct: 306 NFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 295 ELC-MFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRL 353
           ++  M  ++K+LQ L +SQN +S + K    S    LL L +S+  +++   F     R+
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCLPPRI 423

Query: 354 EWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSN 408
           + L L  NKI   IP     +    L  LN++ N L  V       L +L+ + L +N
Sbjct: 424 KVLDLHSNKI-KSIPKQVVKLEA--LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  122 bits (307), Expect = 2e-29
 Identities = 101/539 (18%), Positives = 172/539 (31%), Gaps = 73/539 (13%)

Query: 160 TSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG 219
             +  S N    H+P  LS  ++   LN+ QN +        ++L++L  L +S N++  
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 220 RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LV 278
              S  K  + L  L LS N L   I          L+ + L  N F        F  + 
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV-KIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 279 NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSAC 338
            L  + LS+ +L           + +L    +         + +            L   
Sbjct: 116 QLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH-- 169

Query: 339 NISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLK 398
            I    +          ++   N     I     D       ++         +  + L 
Sbjct: 170 -IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 399 NLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
           N+       + ++   +V    + +FSISN KL G++             D S  SL   
Sbjct: 229 NIETTWN--SFIRILQLVWHTTVWYFSISNVKLQGQLDFR--------DFDYSGTSLK-- 276

Query: 459 IPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQ 518
                     L    +  + F      I    S +       +          +  S   
Sbjct: 277 ---------ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327

Query: 519 VLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFT 578
            L+ +NN + DT       L EL  LIL+ N+   L    +       L+ LD+S+N  +
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387

Query: 579 GVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFL----- 633
                      K                           +L  +++  NIL+  +     
Sbjct: 388 YDEKKGDCSWTK---------------------------SLLSLNMSSNILTDTIFRCLP 420

Query: 634 ----VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSN 688
               V+D  SN+ +  IP+ V KL  L+ LN + N L          LT L+ + L +N
Sbjct: 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (280), Expect = 6e-26
 Identities = 84/481 (17%), Positives = 167/481 (34%), Gaps = 45/481 (9%)

Query: 120 STIVLDYSLTNLSS----------SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHF 169
            T +L+ S   +S            L  L ++   +     +      +L  L LS+N  
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 170 SGHIPSFLSHLKQLYYLNLEQNNL-VGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGL 228
              I         L +L+L  N      I   F N++QL FL LS   L     S +  +
Sbjct: 82  V-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPI 135

Query: 229 RNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSN 288
            +L   ++                L       L     T      I ++   T   L  +
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 289 NLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLR 348
           N+   +E    +   ++     +  +LS  T  +  +T+   +++     + +       
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT------- 248

Query: 349 SQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP------LKNLRF 402
               + +  +S  K+ G++    +D    +L  L++                    N+  
Sbjct: 249 ----VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 403 LDLRSNLLQGSVMVLPPRLIFF---SISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS--G 457
            +   +  +   M+ P ++  F     SNN LT  +  +      +E + L  N L    
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 458 PIPECLVDSITLIWLDLHLNSFNGSIPQISANG-SGLVNLILNDNQFEGPLPQSLANCSR 516
            I E      +L  LD+  NS +    +   +    L++L ++ N     + + L    R
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR 422

Query: 517 LQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNE 576
           ++VL++ +N+I  + P  + +L  L  L + SN+   +            L+ + L  N 
Sbjct: 423 IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSV--PDGIFDRLTSLQKIWLHTNP 479

Query: 577 F 577
           +
Sbjct: 480 W 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (266), Expect = 3e-24
 Identities = 88/517 (17%), Positives = 158/517 (30%), Gaps = 62/517 (11%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
            +P +    L      LN+  N   S L +S    L  L  L +S++       S     
Sbjct: 14  HVPKD----LSQKTTILNISQNYI-SELWTSDILSLSKLRILIISHNRIQYLDISVFKFN 68

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
            ++  LDLS N  V+I              LK L LS      + +     N+ S L +L
Sbjct: 69  QELEYLDLSHNKLVKISC-------HPTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFL 120

Query: 139 HLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIP 198
            L+  +L       +A+L     L +    +          L+     +L          
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEF 178

Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
              ++++  +  +L  + +   L          +  +L  N                L  
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP---------KLSNLTLNN 229

Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFA----RLKNLQYLYLSQNR 314
           I    N F       +     +    +S+  L G ++   F      LK L    +  + 
Sbjct: 230 IETTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 315 LSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQ-DRLEWLQLSENKIYGRIPNWFWD 373
                       F  +     +            S+      L  S N +   +      
Sbjct: 288 FGFPQSYIYEI-FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 374 IGKDTLYNLNLSDNFLTDVEQVP-----LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISN 428
           + +  L  L L  N L ++ ++      +K+L+ LD+  N +         +       +
Sbjct: 347 LTE--LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD----EKKGDCSWTKS 400

Query: 429 NKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISA 488
                           +  +++S+N L+  I  CL   I    LDLH N    SIP+   
Sbjct: 401 ----------------LLSLNMSSNILTDTIFRCLPPRIK--VLDLHSNKIK-SIPKQVV 441

Query: 489 NGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANN 525
               L  L +  NQ +          + LQ + +  N
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (251), Expect = 2e-22
 Identities = 55/363 (15%), Positives = 109/363 (30%), Gaps = 29/363 (7%)

Query: 5   QVIGLDLSCSWLHGSIPSNSSLFLLPYLE-TLNLGSNDFNSSLISSGFGRLISLTHLNLS 63
            +  + L     +G       L         +   +N     ++      + +L   N+ 
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 64  NSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIV 123
                 +    +S L+K+ +     N  +      W   I  L  +    +    +S + 
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 124 LDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQL 183
           L   L       S                  +L  L+   +  + F             +
Sbjct: 259 LQGQLDFRDFDYSGT----------------SLKALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 184 YYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNG 243
              N   +            ++    LD S N LT  +      L  L TL L  N L  
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK- 361

Query: 244 TIP--SWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFA 300
            +   + + T +  L+ + +  N  +            +L S+ +SSN L+  I  C+  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419

Query: 301 RLKNLQYLYLSQNRLSVNTKLDANST-FPKLLKLGLSACNISEFPD-FLRSQDRLEWLQL 358
               ++ L L  N++     +         L +L +++  +   PD        L+ + L
Sbjct: 420 -PPRIKVLDLHSNKI---KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

Query: 359 SEN 361
             N
Sbjct: 476 HTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 6e-20
 Identities = 79/507 (15%), Positives = 145/507 (28%), Gaps = 99/507 (19%)

Query: 210 LDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS 269
           L++S N ++    S +  L  L  L +S N +   +   +F     LE + L  N+    
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-K 83

Query: 270 IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPK 329
           I       VNL  + LS N          F  +  L++L LS   L              
Sbjct: 84  ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE------------- 128

Query: 330 LLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFL 389
                      S              L L E       P              +L   F 
Sbjct: 129 ----------KSSVLPIAHLNISKVLLVLGETYGEKEDPEGL-----QDFNTESLHIVFP 173

Query: 390 TDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFID 449
           T+ E   + ++    + +  L     VL      + +S             T   +  + 
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI-------LAKLQTNPKLSNLT 226

Query: 450 LSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQ 509
           L+N   +       +  + L+W    +  F+            + N+ L           
Sbjct: 227 LNNIETT---WNSFIRILQLVWH-TTVWYFS------------ISNVKLQGQLDFRDFDY 270

Query: 510 SLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRI 569
           S  +   L +  V ++       +       + +     +    +     ++        
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK--ISPFLH 328

Query: 570 LDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNIL 629
           LD S N  T         +L                             L+ + ++MN L
Sbjct: 329 LDFSNNLLTD-TVFENCGHLT---------------------------ELETLILQMNQL 360

Query: 630 SIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSL-RNLTVLESLDLSSN 688
                          +I E+  ++  L+ L+ S N ++             L SL++SSN
Sbjct: 361 KEL-----------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 689 RLVGQIPTQLTSLNFLSKLNLSHNQLE 715
            L   I   L     +  L+L  N+++
Sbjct: 410 ILTDTIFRCLPPR--IKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 10/237 (4%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFN--SSLISSGFGRLISLTHLNLSNSY 66
             +S   L G +      +    L+ L++     +      S  +    ++   N + S 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 67  FSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDY 126
                    S++S  L LD S N               +LT+L+ L+L    +  +    
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVF----ENCGHLTELETLILQMNQLKELSKIA 367

Query: 127 SLTNLSSSLSYLHLTGCNL-IGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYY 185
            +T    SL  L ++  ++         +    L SL++S N  +  I   L    ++  
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKV 425

Query: 186 LNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
           L+L  N +   IP   V L  L  L+++ NQL          L +L  + L  N  +
Sbjct: 426 LDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 76/461 (16%), Positives = 140/461 (30%), Gaps = 106/461 (22%)

Query: 258 VIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV 317
           ++    N     +P  +      T + +S N +S  +       L  L+ L +S NR+  
Sbjct: 4   LVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRI-- 57

Query: 318 NTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKD 377
              LD  S F    +L                                            
Sbjct: 58  -QYLDI-SVFKFNQELE------------------------------------------- 72

Query: 378 TLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPC 437
               L+LS N L  +   P  NL+ LDL  N        LP    F ++S          
Sbjct: 73  ---YLDLSHNKLVKISCHPTVNLKHLDLSFNAFD----ALPICKEFGNMSQ--------- 116

Query: 438 SFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLI 497
                  ++F+ LS   L       +        L +   ++               +L 
Sbjct: 117 -------LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

Query: 498 LN---DNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGL 554
           +    + +F   L  S+   + L++ N+     D+   ++L+ L +L      SN     
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN----- 224

Query: 555 IGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYS 614
                       L  ++ + N F  +L   +   +       + S V++Q    F  +  
Sbjct: 225 ----------LTLNNIETTWNSFIRILQLVWHTTVWYF----SISNVKLQGQLDFRDFDY 270

Query: 615 AFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSL 674
           +  +LK + +              S+ F      +    + + + NF+ +          
Sbjct: 271 SGTSLKALSIH----------QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 675 RNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
             ++    LD S+N L   +      L  L  L L  NQL+
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 624 VEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESL 683
           V  ++     +++ S N         +  L+ L++L  SHN +     S  +    LE L
Sbjct: 15  VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74

Query: 684 DLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQF 724
           DLS N+LV        +L     L+LS N  +  +P   +F
Sbjct: 75  DLSHNKLVKISCHPTVNLKH---LDLSFNAFDA-LPICKEF 111

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (303), Expect = 5e-30
 Identities = 53/286 (18%), Positives = 99/286 (34%), Gaps = 26/286 (9%)

Query: 23  NSSLFLLPYLETLNLGSNDFNS--SLISS-GFGRLISLTHLNLSNSYFSGQIPSEISQLS 79
             S +         + +    +  +               L L +     Q P +  +LS
Sbjct: 46  WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS 104

Query: 80  KMLSLDLSKNDEVRIES-PVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
            +  + +       +   P     ++    L+ L L+   +    L  S+ +L + L  L
Sbjct: 105 HLQHMTIDAA---GLMELPDT---MQQFAGLETLTLARNPLRA--LPASIASL-NRLREL 155

Query: 139 HLTGCNLIGPIPASLAN---------LPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLE 189
            +  C  +  +P  LA+         L  L SL L +      +P+ +++L+ L  L + 
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214

Query: 190 QNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWL 249
            + L   +  +  +L +L  LDL         P    G   L  L L   S   T+P  +
Sbjct: 215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 250 FTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIE 295
              L  LE + LR       +PS I +L     I +  +  +   +
Sbjct: 274 HR-LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (302), Expect = 7e-30
 Identities = 51/251 (20%), Positives = 92/251 (36%), Gaps = 16/251 (6%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           L+L    L    P     F L +L+ + + +       +     +   L  L L+ +   
Sbjct: 86  LELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR 140

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVR-----IESPVWKGLIENLTKLKELVLSEVDMSTIV 123
             +P+ I+ L+++  L +    E+      + S    G  + L  L+ L L    + +  
Sbjct: 141 -ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-- 197

Query: 124 LDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQL 183
           L  S+ NL + L  L +    L   +  ++ +LP+L  L L       + P        L
Sbjct: 198 LPASIANLQN-LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 184 YYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNG 243
             L L+  + +  +P     LTQL  LDL       RLPS +  L     + +  +    
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA- 314

Query: 244 TIPSWLFTVLP 254
            +        P
Sbjct: 315 QLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (294), Expect = 8e-29
 Identities = 54/355 (15%), Positives = 106/355 (29%), Gaps = 57/355 (16%)

Query: 52  GRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKE 111
                  +L    S         +SQ  +  + D ++                N    + 
Sbjct: 9   HHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA--------WRQANSNNPQI 60

Query: 112 LVLSEVDMSTIVLDYSLTNLSS-SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFS 170
              +   +        L + +      L L    L    P     L  L  +++      
Sbjct: 61  ETRTGRALKA--TADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM 117

Query: 171 GHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSW-NQLT--------GRL 221
             +P  +     L  L L +N L   +P S  +L +L  L +    +LT           
Sbjct: 118 -ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 222 PSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLT 281
               +GL NL +LRL    +  ++P+ +   L  L+ + +R++  + ++   I  L  L 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232

Query: 282 SIRLSSNNLSGHI--ELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACN 339
            + L       +             L+ L L           D +              N
Sbjct: 233 ELDLRGCTALRNYPPIFG---GRAPLKRLILK----------DCS--------------N 265

Query: 340 ISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ 394
           +   P  +    +LE L L       R+P+    +       + +  +    ++Q
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA--NCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (274), Expect = 4e-26
 Identities = 57/295 (19%), Positives = 91/295 (30%), Gaps = 36/295 (12%)

Query: 132 SSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQN 191
           SS    L+  G   + P    L+   +  +   +  H         ++            
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGR 66

Query: 192 NLVGGIPDSFVNLTQ--LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWL 249
            L     D   + TQ     L+L    L  + P     L +L  + +    L   +P  +
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 250 FTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNN--------LSGHIELCMFAR 301
                 LE + L  N    ++P++I  L  L  + + +          L+          
Sbjct: 124 QQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 302 LKNLQYLYLSQNRLSVNTKLDAN-STFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSE 360
           L NLQ L L    +     L A+ +    L  L +    +S     +    +LE L L  
Sbjct: 182 LVNLQSLRLEWTGI---RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238

Query: 361 NKIYGRIPNWFWDIGK-DTLYNLNLSD-NFLTDVEQVP-----LKNLRFLDLRSN 408
                  P      G    L  L L D + L     +P     L  L  LDLR  
Sbjct: 239 CTALRNYPP---IFGGRAPLKRLILKDCSNLLT---LPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (266), Expect = 4e-25
 Identities = 60/389 (15%), Positives = 109/389 (28%), Gaps = 83/389 (21%)

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLR 235
              H      L  + +  +    D      +    D +      R  +      N     
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIET 62

Query: 236 LSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIE 295
            +G +L  T         P    + LR        P   F L +L  + + +  L    E
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM---E 118

Query: 296 LCM-FARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLE 354
           L     +   L+ L L++N L                            P  + S +RL 
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-------------------------ALPASIASLNRLR 153

Query: 355 WLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSV 414
            L +        +P        + L + + S           L NL+ L L    ++   
Sbjct: 154 ELSIRACPELTELP--------EPLASTDASGEHQG------LVNLQSLRLEWTGIR--- 196

Query: 415 MVLPP------RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT 468
             LP        L    I N+ L+  +  +      +E +DL   +     P        
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 469 LIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID 528
           L  L L                        + +     LP  +   ++L+ L++      
Sbjct: 255 LKRLILK-----------------------DCSNLLT-LPLDIHRLTQLEKLDLRGCVNL 290

Query: 529 DTFPHWLAQLPELLVLILRSNKFYGLIGN 557
              P  +AQLP   ++++  +    L  +
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 57/384 (14%), Positives = 97/384 (25%), Gaps = 85/384 (22%)

Query: 330 LLKLGLSACN-ISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD-- 386
              L       +  + D L    R      +      R  N         +         
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK 69

Query: 387 NFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPP------RLIFFSISNNKLTGEIPCSFC 440
                +E         L+LRS  L       P        L   +I    L  E+P +  
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP----QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 441 TAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILND 500
             A +E + L+ N L   +P  +     L  L +        +P               +
Sbjct: 125 QFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELP---------------E 168

Query: 501 NQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGL---IGN 557
                           LQ L +    I  + P  +A L  L  L +R++    L   I +
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHH 227

Query: 558 TDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFF 617
                  PKL  LDL         P   F                               
Sbjct: 228 ------LPKLEELDLRGCTALRNYPPI-FGGRAP-------------------------- 254

Query: 618 TLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNL 677
            LK + ++              +     +P  + +L  L+ L+        R+PS +  L
Sbjct: 255 -LKRLILK------------DCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 678 TVLESLDLSSNRLVGQIPTQLTSL 701
                + +  +        +  + 
Sbjct: 301 PANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 53/364 (14%), Positives = 94/364 (25%), Gaps = 74/364 (20%)

Query: 378 TLYNLNLSDNFLTDVEQVP--LKNLRFLDLRSNLLQGSVMVLPP--RLIFFSISNNKLTG 433
              NL    +  T +      L   +           S             + +   L  
Sbjct: 13  GRENLYFQGS--TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK- 69

Query: 434 EIPCSF--CTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS 491
                    T      ++L +  L    P+       L  + +        +P      +
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 492 GLVNLILNDNQFEGPLPQSLANCSRLQVLNVA-NNRI--------DDTFPHWLAQLPELL 542
           GL  L L  N     LP S+A+ +RL+ L++     +                  L  L 
Sbjct: 128 GLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 543 VLILRSNKFYGL---IGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTS 599
            L L       L   I N         L+ L +  +  + + P     +L  +       
Sbjct: 187 SLRLEWTGIRSLPASIAN------LQNLKSLKIRNSPLSALGPA--IHHLPKLE------ 232

Query: 600 TVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKML 659
                                              +D          P + G    LK L
Sbjct: 233 ----------------------------------ELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 660 NFSH-NHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPI 718
                ++L   +P  +  LT LE LDL     + ++P+ +  L     + +  +      
Sbjct: 259 ILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 719 PQGP 722
              P
Sbjct: 318 QHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 32/246 (13%), Positives = 66/246 (26%), Gaps = 62/246 (25%)

Query: 481 GSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPE 540
           GS      + SG  NL    +    P    L+   R    +           +       
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----N 56

Query: 541 LLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQ--NLKAMMRGSNT 598
              +  R+ +      +       P    L+L         P + F+  +L+        
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQ-------- 107

Query: 599 STVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKM 658
                                               +   +     ++P+ + +   L+ 
Sbjct: 108 -----------------------------------HMTIDAAGLM-ELPDTMQQFAGLET 131

Query: 659 LNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNF---------LSKLNL 709
           L  + N L   +P+S+ +L  L  L + +   + ++P  L S +          L  L L
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 710 SHNQLE 715
               + 
Sbjct: 191 EWTGIR 196

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  118 bits (297), Expect = 8e-28
 Identities = 76/389 (19%), Positives = 137/389 (35%), Gaps = 67/389 (17%)

Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
               + L++  + LT  LP CL    ++ TL +  N+L  ++P+      P L  + +  
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALP----PELRTLEVSG 90

Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDA 323
           N+ T S+P     L+ L+       +L         A    L  L++  N+L+       
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLT------- 134

Query: 324 NSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLN 383
                               P        L+ L +S+N++   +P    +     L  L 
Sbjct: 135 ------------------SLPVLPPG---LQELSVSDNQL-ASLPALPSE-----LCKLW 167

Query: 384 LSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAA 443
             +N LT +  +    L+ L +  N L  S+  LP  L      NN+LT  +P       
Sbjct: 168 AYNNQLTSLPML-PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLT-SLPALPSG-- 222

Query: 444 PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQF 503
            ++ + +S N L+  +P    +   L  L +  N     +  +    SGL++L +  NQ 
Sbjct: 223 -LKELIVSGNRLTS-LPVLPSE---LKELMVSGNR----LTSLPMLPSGLLSLSVYRNQL 273

Query: 504 EGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVI 563
              LP+SL + S    +N+  N + +     L ++           +F     +      
Sbjct: 274 TR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETR 332

Query: 564 FPKLRILD-LSRNEFTGVLPTRYFQNLKA 591
              L   D L         P   +     
Sbjct: 333 ALHLAAADWLVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (280), Expect = 9e-26
 Identities = 74/399 (18%), Positives = 125/399 (31%), Gaps = 79/399 (19%)

Query: 32  LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDE 91
              LN+G +   +  +         +T L + ++  +  +P+   +L    +L++S N  
Sbjct: 42  NAVLNVGESGLTT--LPDCLPA--HITTLVIPDNNLT-SLPALPPELR---TLEVSGN-- 91

Query: 92  VRIES-PVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIP 150
            ++ S PV   L   L +L                  L  L S L  L + G N +  +P
Sbjct: 92  -QLTSLPV---LPPGLLELSIFSNPLT---------HLPALPSGLCKLWIFG-NQLTSLP 137

Query: 151 ASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFL 210
                L     LS+S N  +  +P+  S L +L+  N   N L   +P     L +L   
Sbjct: 138 VLPPGL---QELSVSDNQLA-SLPALPSELCKLWAYN---NQLTS-LPMLPSGLQEL--- 186

Query: 211 DLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSI 270
            +S NQL   LP+    L  L        SL              L+ + +  NR T S+
Sbjct: 187 SVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG--------LKELIVSGNRLT-SL 236

Query: 271 PSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKL 330
           P        L  + +S N L+    L        L  L + +N+L+              
Sbjct: 237 PV---LPSELKELMVSGNRLT---SLP--MLPSGLLSLSVYRNQLT-------------- 274

Query: 331 LKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLT 390
                        P+ L        + L  N +  R      +I     Y+  +    + 
Sbjct: 275 -----------RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMA 323

Query: 391 DVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNN 429
                       L     L+        P   +      
Sbjct: 324 GASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.3 bits (229), Expect = 2e-19
 Identities = 71/356 (19%), Positives = 119/356 (33%), Gaps = 61/356 (17%)

Query: 381 NLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFC 440
                   +  +          L++  + L      LP  +    I +N LT  +P    
Sbjct: 23  ESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPALPP 81

Query: 441 TAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILND 500
               +  +++S N L+  +P      + L      L              SGL  L +  
Sbjct: 82  E---LRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFG 130

Query: 501 NQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDA 560
           NQ    LP        LQ L+V++N++  + P   ++L +L     +      L      
Sbjct: 131 NQLTS-LPVLPPG---LQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPMLPSG--- 182

Query: 561 RVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLK 620
                 L+ L +S N+    LPT     L  +   +N                     L 
Sbjct: 183 ------LQELSVSDNQLA-SLPTL-PSELYKLWAYNN--------------------RLT 214

Query: 621 GIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVL 680
            +    + L     +  S NR    +P +  +   LK L  S N LT  +P     L   
Sbjct: 215 SLPALPSGLK---ELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGLL-- 264

Query: 681 ESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNL 736
            SL +  N+L  ++P  L  L+  + +NL  N L     Q  +  T  +  Y G +
Sbjct: 265 -SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT-SAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.3 bits (224), Expect = 6e-19
 Identities = 76/397 (19%), Positives = 124/397 (31%), Gaps = 113/397 (28%)

Query: 329 KLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNF 388
               L +    ++  PD L +   +  L + +N +   +P          L  L +S N 
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNL-TSLPALP-----PELRTLEVSGNQ 92

Query: 389 LTDVEQVP--LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIE 446
           LT +  +P  L  L         L      LP  L    I  N+LT  +P        ++
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLTHLP----ALPSGLCKLWIFGNQLT-SLPVLPPG---LQ 144

Query: 447 FIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGP 506
            + +S+N                      L S      +       L  L   +NQ    
Sbjct: 145 ELSVSDN---------------------QLASLPALPSE-------LCKLWAYNNQLTS- 175

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPK 566
           LP   +    LQ L+V++N++  + P   ++L +L     R      L            
Sbjct: 176 LPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG--------- 222

Query: 567 LRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEM 626
           L+ L +S N  T  LP      LK                                    
Sbjct: 223 LKELIVSGNRLTS-LPVL-PSELK------------------------------------ 244

Query: 627 NILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLS 686
                   +  S NR    +P +   L     L+   N LT R+P SL +L+   +++L 
Sbjct: 245 -------ELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 687 SNRL---VGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ 720
            N L     Q   ++TS    S   +  +      P+
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.0 bits (223), Expect = 8e-19
 Identities = 57/317 (17%), Positives = 103/317 (32%), Gaps = 57/317 (17%)

Query: 300 ARLKNLQYLYLSQNRLSV--------NTKLDAN--------STFPKLLKLGLSACNISEF 343
                   L + ++ L+          T L           +  P+L  L +S   ++  
Sbjct: 37  CLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSL 96

Query: 344 PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFL 403
           P        L         +               L  L +  N LT +  +    L+ L
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPALPSG---------LCKLWIFGNQLTSLPVL-PPGLQEL 146

Query: 404 DLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECL 463
            +  N L  S+  LP  L      NN+LT  +P        ++ + +S+N L+  +P   
Sbjct: 147 SVSDNQLA-SLPALPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLAS-LPTLP 200

Query: 464 VDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVA 523
            +   L   +  L S            SGL  LI++ N+    LP      S L+ L V+
Sbjct: 201 SELYKLWAYNNRLTSLPALP-------SGLKELIVSGNRLTS-LPVLP---SELKELMVS 249

Query: 524 NNRIDDTFPHWLAQLPELLVLILRSNKFYGL---IGNTDARVIFPKLRILDLSRNEFTGV 580
            NR+  + P   + L     L +  N+   L   + +            ++L  N  +  
Sbjct: 250 GNRL-TSLPMLPSGLLS---LSVYRNQLTRLPESLIH------LSSETTVNLEGNPLS-E 298

Query: 581 LPTRYFQNLKAMMRGSN 597
              +  + + +    S 
Sbjct: 299 RTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 42/213 (19%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 28  LLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLS 87
           L   L+ L++  N   S  + +    L  L   N   +     +P+  S L     L +S
Sbjct: 179 LPSGLQELSVSDNQLAS--LPTLPSELYKLWAYNNRLT----SLPALPSGLK---ELIVS 229

Query: 88  KNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIG 147
            N   R+ S     L    ++LKEL++S   ++      SL  L S L  L +   N + 
Sbjct: 230 GN---RLTS-----LPVLPSELKELMVSGNRLT------SLPMLPSGLLSLSVYR-NQLT 274

Query: 148 PIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQL 207
            +P SL +L   T+++L  N  S      L  +      +            +      L
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

Query: 208 SFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNS 240
                 W  L                     N+
Sbjct: 335 HLAAADW--LVPAREGEPAPADRWHMFGQEDNA 365

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  111 bits (280), Expect = 4e-26
 Identities = 91/484 (18%), Positives = 163/484 (33%), Gaps = 72/484 (14%)

Query: 18  GSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQ 77
           G   S +  F      +    + +   +  +    +L +LT L+  NS  +    + I +
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFE-MQATDTISEEQLATLTSLDCHNSSITD--MTGIEK 62

Query: 78  LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSY 137
           L+ +  L  + N+   ++       +   T L  L                         
Sbjct: 63  LTGLTKLICTSNNITTLD-------LSQNTNLTYLACDS--------------------- 94

Query: 138 LHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGI 197
                 N +  +   +  L +LT L+   N  +  +   +S    L YLN  +N L    
Sbjct: 95  ------NKLTNLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT--- 140

Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
                + TQL+ LD   N+   +L   +     L TL  S N +   +     +    L 
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD---VSQNKLLN 194

Query: 258 VIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV 317
            ++   N  T  +   + + + LT +  SSN L+  I+      L  L Y   S N L  
Sbjct: 195 RLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPL-- 245

Query: 318 NTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKD 377
            T+LD  ST  KL  L     ++ E    L    +L + Q    +    +     D+  +
Sbjct: 246 -TELD-VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-----DVTHN 296

Query: 378 T-LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIP 436
           T LY L+     +T+++      L +L L +  L    +    +L   S  N  +     
Sbjct: 297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSS 356

Query: 437 CSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNL 496
                A  +     +         E L ++   I +   L    G+   I     G+ + 
Sbjct: 357 VGKIPA--LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQ 414

Query: 497 ILND 500
             N 
Sbjct: 415 ATNT 418

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (251), Expect = 1e-22
 Identities = 81/497 (16%), Positives = 151/497 (30%), Gaps = 81/497 (16%)

Query: 272 STIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLL 331
           +  F   N  S   ++  +     +    +L  L  L    + +   T +        L 
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSI---TDMTGIEKLTGLT 67

Query: 332 KLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTD 391
           KL  ++ NI+                LS+N                 L  L    N LT+
Sbjct: 68  KLICTSNNITTLD-------------LSQNT---------------NLTYLACDSNKLTN 99

Query: 392 VEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLS 451
           ++  PL  L +L+  +N L    +   P L + + + N LT EI  S  T   +  +D  
Sbjct: 100 LDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT-EIDVSHNTQ--LTELDCH 156

Query: 452 NNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSL 511
            N     +   +     L  LD   N     +  +S N   L  L  + N         L
Sbjct: 157 LNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD-VSQNKL-LNRLNCDTNNITKL---DL 208

Query: 512 ANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILD 571
               +L  L+ ++N++       +  L +L       N    L  +T       KL  L 
Sbjct: 209 NQNIQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLTELDVST-----LSKLTTLH 260

Query: 572 LSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSI 631
             + +    +   +   L                             +K +DV  N    
Sbjct: 261 CIQTDLL-EIDLTHNTQLIYFQAEGCRK-------------------IKELDVTHNTQLY 300

Query: 632 FLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV 691
            L  D  +     ++   + +   L  L  ++  LT  +   + + T L+SL   +  + 
Sbjct: 301 LL--DCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

Query: 692 GQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNID 751
               + +  +  L+    +  Q      +    N+         L   G P++ +  +  
Sbjct: 353 -DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGG 410

Query: 752 DAQEPAPRDTWSWFDWK 768
              +     TW      
Sbjct: 411 VYDQATNTITWENLSTD 427

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  103 bits (258), Expect = 3e-24
 Identities = 57/271 (21%), Positives = 83/271 (30%), Gaps = 40/271 (14%)

Query: 105 NLTKLKELVLSEVDMSTIVLDYSLTNLS-SSLSYLHLTGCNLIGPIPASLANL--PQLTS 161
               LK L +    + + +L  +L  L  S L  L L    + G  P  L     P L  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 162 LSLSYNHFSGHIPSFLSHLKQ-----LYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQ 216
           L+L    ++    ++L+ L+Q     L  L++ Q + +    +       LS LDLS N 
Sbjct: 126 LNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 217 LTGRLP----SCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPS 272
             G        C      L  L L    +                         +G   +
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGME----------------------TPSGVCSA 222

Query: 273 TIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK 332
                V L  + LS N+L              L  L LS   L    K        KL  
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK----GLPAKLSV 278

Query: 333 LGLSACNISEFPDFLRSQDRLEWLQLSENKI 363
           L LS   +   P       ++  L L  N  
Sbjct: 279 LDLSYNRLDRNPSPDELP-QVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.1 bits (226), Expect = 4e-20
 Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 20/250 (8%)

Query: 32  LETLNLGSNDFNSSLISS--GFGRLISLTHLNLSNSYFSGQIPSEISQL--SKMLSLDLS 87
           L+ L + +    S ++        +  L  L L N   +G  P  + +     +  L+L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 88  KNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIG 147
                  ++ + +        LK L +++              +  +LS L L+    +G
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF--SCEQVRVFPALSTLDLSDNPELG 187

Query: 148 PIPASLA----NLPQLTSLSLSYNHF---SGHIPSFLSHLKQLYYLNLEQNNLVGGIPD- 199
                 A      P L  L+L        SG   +  +   QL  L+L  N+L       
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
           S    +QL+ L+LS+  L  ++P  L     L  L LS N L+   PS     LP +  +
Sbjct: 248 SCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLD-RNPSPDE--LPQVGNL 301

Query: 260 HLRDNRFTGS 269
            L+ N F  S
Sbjct: 302 SLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.9 bits (210), Expect = 4e-18
 Identities = 59/306 (19%), Positives = 94/306 (30%), Gaps = 25/306 (8%)

Query: 143 CNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFV 202
           CN   P P   +    L +  +           +       Y L         G     +
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVEL---------YGGGRSLEYLLKRVDTEADLGQFTDII 65

Query: 203 NLTQLSFLDLSWNQLTGRLPSCLK---GLRNLVTLRLSGNSLNGTIP-SWLFTVLPYLEV 258
               L  L +   ++  R+        G+  L  L L    + GT P   L    P L +
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 259 IHLRDNRFTG--SIPSTIFELVNLTSIRLS-SNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           ++LR+  +    +  + + + +      LS +   S +           L  L LS N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 316 SVNTKLDA---NSTFPKLLKLGLSACNISEFPDFLRS----QDRLEWLQLSENKIYGRIP 368
                L +      FP L  L L    +        +    + +L+ L LS N +     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 369 NWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQG-SVMVLPPRLIFFSIS 427
               D     L +LNLS   L  V +     L  LDL  N L         P++   S+ 
Sbjct: 246 APSCDWPS-QLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLK 304

Query: 428 NNKLTG 433
            N    
Sbjct: 305 GNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 1e-17
 Identities = 51/237 (21%), Positives = 74/237 (31%), Gaps = 32/237 (13%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSN---DFNSSLISSGFGRLISLTHLNLSNS 65
           L L    + G+ P        P L  LNL +      ++ L          L  L+++ +
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 66  YFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLD 125
           +       ++     + +LDLS N E+     +          L+ L L           
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR---------- 209

Query: 126 YSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIP-SFLSHLKQLY 184
                        +       G   A  A   QL  L LS+N               QL 
Sbjct: 210 -------------NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL 241
            LNL    L          L+    LDLS+N+L  R PS    L  +  L L GN  
Sbjct: 257 SLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 54/278 (19%), Positives = 93/278 (33%), Gaps = 31/278 (11%)

Query: 324 NSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT----- 378
             +   LLK   +  ++ +F D ++S   L+ L +   +I  RI      +   +     
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 379 -LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLP-------PRLIFFSISNNK 430
            L NL ++      + +    +L  L+LR+         L        P L   SI+   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 431 LTGEIPCSFCTAAP-IEFIDLSNNSLSGPI-------PECLVDSITLIWLDLHLNSFNGS 482
                 C      P +  +DLS+N   G         P        L   +  + + +G 
Sbjct: 161 SL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 483 IPQISANGSGLVNLILNDNQFEG-PLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL 541
              ++A    L  L L+ N         S    S+L  LN++   +        A+   L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---L 276

Query: 542 LVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTG 579
            VL L  N+         +    P++  L L  N F  
Sbjct: 277 SVLDLSYNRLDRN----PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 62/283 (21%), Positives = 90/283 (31%), Gaps = 31/283 (10%)

Query: 447 FIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISA---NGSGLVNLILNDNQF 503
            +   +          ++ S++L  L +        I   +      SGL  L L + + 
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 504 EGPLPQSLANCS--RLQVLNVANNRIDDTFPHWLAQLPELL-----VLILRSNKFYGLIG 556
            G  P  L   +   L +LN+ N     T   WLA+L + L     VL +          
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 557 NTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAF 616
                 +FP L  LDLS N   G         L + +      T+QV  +   G      
Sbjct: 167 EQVR--VFPALSTLDLSDNPELGERG------LISALCPLKFPTLQVLALRNAG-----M 213

Query: 617 FTLKGIDVEMNILSIFL-VIDFSSNRFEGQIPEVV-GKLNLLKMLNFSHNHLTGRIPSSL 674
            T  G+   +    + L  +D S N              + L  LN S   L        
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273

Query: 675 RNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGP 717
                L  LDLS NRL    P     L  +  L+L  N     
Sbjct: 274 AK---LSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 4e-10
 Identities = 42/254 (16%), Positives = 73/254 (28%), Gaps = 29/254 (11%)

Query: 476 LNSFNGSIPQISANGSGLVNLILNDNQFEGPLP-QSLANCSRLQVLNVANNRIDDTFPHW 534
            N    +  ++   G  L  L+   +          +     L+ L V   RI       
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 535 LAQL---PELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLP--TRYFQNL 589
             ++     L  L L + +  G           P L IL+L    +           Q L
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147

Query: 590 KAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPE- 648
           K  ++  + +                         ++ +      +D S N   G+    
Sbjct: 148 KPGLKVLSIAQAHSLNFS---------------CEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 649 ---VVGKLNLLKMLNFSHNHLT---GRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTS-L 701
                 K   L++L   +  +    G   +       L+ LDLS N L            
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 702 NFLSKLNLSHNQLE 715
           + L+ LNLS   L+
Sbjct: 253 SQLNSLNLSFTGLK 266

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  102 bits (257), Expect = 4e-24
 Identities = 53/257 (20%), Positives = 92/257 (35%), Gaps = 22/257 (8%)

Query: 153 LANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL 212
              L     ++   ++ +       + L  +  L+     +     +    L  L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLEL 70

Query: 213 SWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPS 272
             NQ+T    + LK L  +  L LSGN L           L  ++ + L   + T   P 
Sbjct: 71  KDNQITD--LAPLKNLTKITELELSGNPLKNVSA---IAGLQSIKTLDLTSTQITDVTP- 124

Query: 273 TIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK 332
            +  L NL  + L  N ++    +   A L NLQYL +   ++   + L   +   KL  
Sbjct: 125 -LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQV---SDLTPLANLSKLTT 177

Query: 333 LGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDV 392
           L      IS+    L S   L  + L  N+I    P          L+ + L++  +T+ 
Sbjct: 178 LKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLA----NTSNLFIVTLTNQTITNQ 232

Query: 393 EQVPLKNLRFLDLRSNL 409
                 NL   ++    
Sbjct: 233 PVFYNNNLVVPNVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.0 bits (221), Expect = 2e-19
 Identities = 56/272 (20%), Positives = 100/272 (36%), Gaps = 26/272 (9%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
           +I        L     +  G ++   +        L  +T L+   +  +  I   +  L
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVT-TI-EGVQYL 62

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
           + ++ L+L  N    +        ++NLTK+ EL LS   +  +     L +    +  L
Sbjct: 63  NNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVSAIAGLQS----IKTL 112

Query: 139 HLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIP 198
            LT   +    P  LA L  L  L L  N  + +I   L+ L  L YL++    +     
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD--L 166

Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
               NL++L+ L    N+++    S L  L NL+ + L  N ++   P         L +
Sbjct: 167 TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP---LANTSNLFI 221

Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNL 290
           + L +   T         LV    ++  S   
Sbjct: 222 VTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.7 bits (210), Expect = 4e-18
 Identities = 50/272 (18%), Positives = 104/272 (38%), Gaps = 23/272 (8%)

Query: 223 SCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTS 282
                L N + +    +++  T+       L  +  +       T +I   +  L NL  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIG 67

Query: 283 IRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISE 342
           + L  N ++   +L     L  +  L LS N L     + A +    +  L L++  I++
Sbjct: 68  LELKDNQIT---DLAPLKNLTKITELELSGNPL---KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 343 FPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK-DTLYNLNLSDNFLTDVEQV-PLKNL 400
               L     L+ L L  N+I   I      +     L  L++ +  ++D+  +  L  L
Sbjct: 122 VTP-LAGLSNLQVLYLDLNQI-TNISP----LAGLTNLQYLSIGNAQVSDLTPLANLSKL 175

Query: 401 RFLDLRSNLLQG-SVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPI 459
             L    N +   S +   P LI   + NN+++   P +  +   +  + L+N +++   
Sbjct: 176 TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSN--LFIVTLTNQTITN-Q 232

Query: 460 PECLVDSITLIWLDLHLNSFNGSIPQISANGS 491
           P    +++ +  +    +    +   IS NG+
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 39/197 (19%), Positives = 76/197 (38%), Gaps = 23/197 (11%)

Query: 24  SSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIP--SEISQLSKM 81
           S++  L  ++TL+L S         +    L +L  L L  +    QI   S ++ L+ +
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLN----QITNISPLAGLTNL 153

Query: 82  LSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLT 141
             L +       +        + NL+KL  L   +  +S I     L +L + L  +HL 
Sbjct: 154 QYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDIS---PLASLPN-LIEVHLK 203

Query: 142 GCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSF 201
             N I  +   LAN   L  ++L+    +     + ++L     +       +   P + 
Sbjct: 204 N-NQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI--APATI 259

Query: 202 VNLTQLSFLDLSWNQLT 218
            +    +  +L+WN  +
Sbjct: 260 SDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 53/291 (18%), Positives = 105/291 (36%), Gaps = 69/291 (23%)

Query: 302 LKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSEN 361
           L N   +   ++ +   T     +    +  L      ++     ++  + L  L+L +N
Sbjct: 18  LANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN 73

Query: 362 KIYGRIPNWFWDIGKDT-LYNLNLSDNFLTDVEQV-PLKNLRFLDLRSNLLQGSVMVLPP 419
           +I   +      +   T +  L LS N L +V  +  L++++ LDL              
Sbjct: 74  QI-TDLAP----LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL-------------- 114

Query: 420 RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSF 479
                  ++ ++T   P +  +   ++ + L  N ++                       
Sbjct: 115 -------TSTQITDVTPLAGLSN--LQVLYLDLNQIT----------------------- 142

Query: 480 NGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLP 539
             +I  ++   + L  L + + Q        LAN S+L  L   +N+I D  P  LA LP
Sbjct: 143 --NISPLA-GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISP--LASLP 195

Query: 540 ELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLK 590
            L+ + L++N+   +    +       L I+ L+    T   P  Y  NL 
Sbjct: 196 NLIEVHLKNNQISDVSPLAN----TSNLFIVTLTNQTITN-QPVFYNNNLV 241

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 47/274 (17%), Positives = 95/274 (34%), Gaps = 37/274 (13%)

Query: 445 IEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFE 504
              I    ++++  + +  +D IT   L         +I  +    + L+ L L DNQ  
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGIT--TLSAFGTGVT-TIEGVQ-YLNNLIGLELKDNQIT 76

Query: 505 GPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIF 564
              P  L N +++  L ++ N + +     +A L  +  L L S +   +          
Sbjct: 77  DLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAG----L 128

Query: 565 PKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDV 624
             L++L L  N+ T + P     NL+ +  G+     QV  +       +    L  +  
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA----QVSDL-------TPLANLSKLTT 177

Query: 625 EMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLD 684
                     +    N+    I  +   L  L  ++  +N ++    S L N + L  + 
Sbjct: 178 ----------LKADDNKIS-DISPL-ASLPNLIEVHLKNNQISD--VSPLANTSNLFIVT 223

Query: 685 LSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPI 718
           L++  +  Q      +L   + +         P 
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 39/219 (17%), Positives = 70/219 (31%), Gaps = 35/219 (15%)

Query: 497 ILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIG 556
           I          P      +    +    + + DT     A L  +  L         + G
Sbjct: 3   ITQPTAINVIFP--DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG 58

Query: 557 NTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAF 616
                     L  L+L  N+ T + P +    +  +    N                SA 
Sbjct: 59  VQY----LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-----------VSAI 103

Query: 617 FTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRN 676
             L+ I            +D +S +     P  +  L+ L++L    N +T    S L  
Sbjct: 104 AGLQSIK----------TLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN--ISPLAG 149

Query: 677 LTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
           LT L+ L + + ++    P  L +L+ L+ L    N++ 
Sbjct: 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  105 bits (263), Expect = 9e-24
 Identities = 97/527 (18%), Positives = 168/527 (31%), Gaps = 92/527 (17%)

Query: 210 LDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS 269
           L LS N ++      +  L  L  LRLS N +  ++   +F     LE + +  NR   +
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-N 114

Query: 270 IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPK 329
           I      + +L  + LS N+         F  L  L +L LS  +      L        
Sbjct: 115 ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172

Query: 330 LLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFL 389
            + L L + +I               L L  +     + +   ++  + L +L LS+  L
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS--LFSVQVNMSVNALGHLQLSNIKL 230

Query: 390 TDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFID 449
            D     L        R   L          +    I            F    P+E+++
Sbjct: 231 NDENCQRLMTFLSELTRGPTLL--------NVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 450 LSNNSLSGPIPECLVDSI-----TLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFE 504
           + N +++  I             +L+   +    F  S   + +  + +   +L+ +   
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342

Query: 505 GPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIF 564
                   + S    LN   N   D+     + L                          
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK------------------------- 377

Query: 565 PKLRILDLSRNEFTGV-LPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGID 623
            +L+ L L RN            +N+                            +L+ +D
Sbjct: 378 -RLQTLILQRNGLKNFFKVALMTKNMS---------------------------SLETLD 409

Query: 624 VEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSL-RNLTVLES 682
           V +N L+                         + +LN S N LTG +   L   + VL  
Sbjct: 410 VSLNSLN------------SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL-- 455

Query: 683 LDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQS 729
            DL +NR+   IP  +T L  L +LN++ NQL+  +P G  F+   S
Sbjct: 456 -DLHNNRI-MSIPKDVTHLQALQELNVASNQLKS-VPDGV-FDRLTS 498

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.8 bits (215), Expect = 8e-18
 Identities = 99/495 (20%), Positives = 174/495 (35%), Gaps = 65/495 (13%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
               L+LS +  S     +IS LS++  L LS N    ++      +      L+ L +S
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF----HVFLFNQDLEYLDVS 108

Query: 116 EVDMSTIVLDYSLTNLS----SSLSYLHLTGCNLIG-PIPASLANLPQLTSLSLSYNHFS 170
                       L N+S    +SL +L L+  +    P+     NL +LT L LS   F 
Sbjct: 109 ---------HNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 171 GHIPSFLSHLKQLY-YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLR 229
                 ++HL      L+L   ++ GG  +S       + L L ++  +         + 
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 230 NLVTLRLSGNSLNGT------IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVN---L 280
            L  L+LS   LN              T  P L  + L+    T      +F+      +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 281 TSIRLSSNNLSGHIELCMFA----RLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLS 336
             + + +  ++  I+   F      LK+L   ++       + +    S F ++    LS
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE-ALYSVFAEMNIKMLS 337

Query: 337 ACNISEFPD-FLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV 395
             +          S     +L  ++N     +      + +  L  L L  N L +  +V
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR--LQTLILQRNGLKNFFKV 395

Query: 396 P-----LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL 450
                 + +L  LD+  N L                     +     +   A  I  ++L
Sbjct: 396 ALMTKNMSSLETLDVSLNSLN--------------------SHAYDRTCAWAESILVLNL 435

Query: 451 SNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQS 510
           S+N L+G +  CL   +    LDLH N    SIP+   +   L  L +  NQ +      
Sbjct: 436 SSNMLTGSVFRCLPPKVK--VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492

Query: 511 LANCSRLQVLNVANN 525
               + LQ + + +N
Sbjct: 493 FDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.5 bits (209), Expect = 4e-17
 Identities = 64/334 (19%), Positives = 115/334 (34%), Gaps = 31/334 (9%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLS-NSYF 67
           LDL    + G    +  +     L  L    N   S  ++     L  L   N+  N   
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLH-LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 68  SGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENL--TKLKELVLSEVDMSTIVLD 125
             ++ + +S+L++  +L       +         L +      ++ L +  + ++  +  
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294

Query: 126 YSLTNLSSSLSYL---HLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQ 182
              T   ++L  L   H+     +    A  +   ++    LS +               
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 183 LYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLT--GRLPSCLKGLRNLVTLRLSGNS 240
             +LN  QN     +      L +L  L L  N L    ++    K + +L TL +S NS
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 241 LNGTIPSWLFTVLPYLEVIHLRDNRFTG---------------------SIPSTIFELVN 279
           LN             + V++L  N  TG                     SIP  +  L  
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQA 474

Query: 280 LTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
           L  + ++SN L   +   +F RL +LQY++L  N
Sbjct: 475 LQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 70/457 (15%), Positives = 126/457 (27%), Gaps = 102/457 (22%)

Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           +   +   T  +P  +       ++ LS N++S  + +   + L  L+ L LS NR+   
Sbjct: 36  VDYSNRNLT-HVPKDL--PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI--- 88

Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT 378
             LD    F     L                                             
Sbjct: 89  RSLDF-HVFLFNQDLE-------------------------------------------- 103

Query: 379 LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCS 438
              L++S N L ++   P+ +LR LDL  N       VLP    F +++           
Sbjct: 104 --YLDVSHNRLQNISCCPMASLRHLDLSFNDFD----VLPVCKEFGNLTK---------- 147

Query: 439 FCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLIL 498
                 + F+ LS       +    V  + L  + L L S+   I         + N  +
Sbjct: 148 ------LTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLVSY--HIKGGETESLQIPNTTV 198

Query: 499 NDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNT 558
               F                 N   +   +   + L  L +L  + L       L+   
Sbjct: 199 LHLVFHP---------------NSLFSVQVNMSVNALGHL-QLSNIKLNDENCQRLMTFL 242

Query: 559 DARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFT 618
                 P L  + L   E T     + FQ             + +  +    R     FT
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFW----PRPVEYLNIYNLTITERIDREEFT 298

Query: 619 LKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLT 678
                     L   ++    +  F      +      + +   S +           + +
Sbjct: 299 YSE-----TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 679 VLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
               L+ + N     +    ++L  L  L L  N L+
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  100 bits (252), Expect = 1e-23
 Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 16/211 (7%)

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT 244
            L+L  N L      SF +  +L  LDLS  ++        + L +L TL L+GN +  +
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLK 303
           +    F+ L  L+ +   +     S+ +     L  L  + ++ N +        F+ L 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 304 NLQYLYLSQNRLSVNTKLDANSTFPKL-------LKLGLSACNISEFPDFLRSQDRLEWL 356
           NL++L LS N++     +        L       L L LS   ++        + RL+ L
Sbjct: 150 NLEHLDLSSNKI---QSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205

Query: 357 QLSENKIYGRIPNWFWDIGKDTLYNLNLSDN 387
            L  N++   +P+  +D    +L  + L  N
Sbjct: 206 ALDTNQL-KSVPDGIFDRLT-SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 13/216 (6%)

Query: 154 ANLP-QLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL 212
            NLP    +L LS+N              +L  L+L +  +      ++ +L+ LS L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 213 SWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPS 272
           + N +         GL +L  L     +L  ++ ++    L  L+ +++  N        
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 273 TIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQY----LYLSQNRLSVNTKLDANS-T 326
             F  L NL  + LSSN +   I       L  +      L LS N +     +   +  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM---NFIQPGAFK 198

Query: 327 FPKLLKLGLSACNISEFPD-FLRSQDRLEWLQLSEN 361
             +L +L L    +   PD        L+ + L  N
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 90.0 bits (224), Expect = 4e-20
 Identities = 66/297 (22%), Positives = 102/297 (34%), Gaps = 85/297 (28%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
            IP N    L    + L+L  N     L S  F     L  L+LS             ++
Sbjct: 21  KIPDN----LPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSR-----------CEI 64

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
                          IE     G  ++L+ L  L+L+              N   SL+  
Sbjct: 65  Q-------------TIED----GAYQSLSHLSTLILTG-------------NPIQSLA-- 92

Query: 139 HLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFL-SHLKQLYYLNLEQNNL-VGG 196
                        + + L  L  L     + +  + +F   HLK L  LN+  N +    
Sbjct: 93  -----------LGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
           +P+ F NLT L  LDLS N++     + L+ L  +  L LS                   
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS------------------- 181

Query: 257 EVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
             + L  N     I    F+ + L  + L +N L   +   +F RL +LQ ++L  N
Sbjct: 182 --LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 64/288 (22%), Positives = 93/288 (32%), Gaps = 82/288 (28%)

Query: 482 SIPQ-ISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRI----DDTFPHWLA 536
            IP  +  +     NL L+ N        S  +   LQVL+++   I    D  +     
Sbjct: 21  KIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----Q 73

Query: 537 QLPELLVLILRSNK--------FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQN 588
            L  L  LIL  N         F GL            L+ L          L      +
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGL----------SSLQKLVAVETNLAS-LENFPIGH 122

Query: 589 LKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPE 648
           LK                           TLK ++V  N++  F            ++PE
Sbjct: 123 LK---------------------------TLKELNVAHNLIQSF------------KLPE 143

Query: 649 VVGKLNLLKMLNFSHNHLTGRIP----SSLRNLTVLE-SLDLSSNRLVGQIPTQLTSLNF 703
               L  L+ L+ S N +   I       L  + +L  SLDLS N +    P     +  
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR- 201

Query: 704 LSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNID 751
           L +L L  NQL+  +P G     F   + +  + L   P    C  ID
Sbjct: 202 LKELALDTNQLKS-VPDG----IFDRLTSLQKIWLHTNPWDCSCPRID 244

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 37/224 (16%)

Query: 378 TLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGE 434
           +  NL+LS N L  +          L+ LDL    +Q     +     + S+S+      
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDG-AYQSLSH------ 77

Query: 435 IPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANG-SGL 493
                     +  + L+ N +            +L  L     +   S+          L
Sbjct: 78  ----------LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTL 126

Query: 494 VNLILNDNQF-EGPLPQSLANCSRLQVLNVANNRI----DDTFPHWLAQLPEL-LVLILR 547
             L +  N      LP+  +N + L+ L++++N+I           L Q+P L L L L 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLS 185

Query: 548 SNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKA 591
            N    +       +   +L+ L L  N+    +P   F  L +
Sbjct: 186 LNPMNFIQPGAFKEI---RLKELALDTNQLK-SVPDGIFDRLTS 225

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 14/208 (6%)

Query: 353 LEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNL 409
            + L LS N +       F+   +  L  L+LS   +  +E      L +L  L L  N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPE--LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 410 LQ---GSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSL-SGPIPECLVD 465
           +Q            L         L             ++ +++++N + S  +PE   +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 466 SITLIWLDLHLNSF----NGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLN 521
              L  LDL  N         +  +       ++L L+ N     +        RL+ L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELA 206

Query: 522 VANNRIDDTFPHWLAQLPELLVLILRSN 549
           +  N++         +L  L  + L +N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 48/252 (19%), Positives = 69/252 (27%), Gaps = 55/252 (21%)

Query: 445 IEFIDLSNNSLSGPIPECLVDSIT-LIWLDLHLNSFNGSIPQISANG-SGLVN---LILN 499
            + +DLS N L   +      S   L  LDL        I  I       L +   LIL 
Sbjct: 30  TKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILT 84

Query: 500 DNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTD 559
            N  +     + +  S LQ L      +       +  L  L  L +  N          
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE- 143

Query: 560 ARVIF---PKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAF 616
               F     L  LDLS N+    +     + L                           
Sbjct: 144 ---YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLH-------------------------- 173

Query: 617 FTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRN 676
                      +  + L +D S N      P    ++ L K L    N L          
Sbjct: 174 ----------QMPLLNLSLDLSLNPMNFIQPGAFKEIRL-KELALDTNQLKSVPDGIFDR 222

Query: 677 LTVLESLDLSSN 688
           LT L+ + L +N
Sbjct: 223 LTSLQKIWLHTN 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  105 bits (262), Expect = 1e-23
 Identities = 57/322 (17%), Positives = 117/322 (36%), Gaps = 28/322 (8%)

Query: 109 LKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNH 168
           + E +     +  I  D +           +L   ++   +      L  +  +  + + 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETI----KDNLKKKSVTDAVT--QNELNSIDQIIANNSD 54

Query: 169 FSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGL 228
               +   + +L  +  L L  N L    P +  NL  L +L L  N++     S LK L
Sbjct: 55  IK-SV-QGIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKD--LSSLKDL 108

Query: 229 RNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSN 288
           + L +L L  N ++  I       LP LE ++L +N+ T    + +  L  L ++ L  N
Sbjct: 109 KKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 163

Query: 289 NLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNI-SEFPDFL 347
            +S   ++   A L  LQ LYLS+N +   + L A +    L  L L +    ++  +  
Sbjct: 164 QIS---DIVPLAGLTKLQNLYLSKNHI---SDLRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 348 RSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRS 407
            +      ++ ++  +                   N+  +      +V     + + +  
Sbjct: 218 SNLVVPNTVKNTDGSLV----TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273

Query: 408 NLLQGSVMVLPPRLIFFSISNN 429
              +    V  P    +++S +
Sbjct: 274 AKARFHGRVTQPLKEVYTVSYD 295

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.9 bits (225), Expect = 5e-19
 Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 33/242 (13%)

Query: 5   QVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSN 64
           + I  +L       S+    +   L  ++ +   ++D  S     G   L ++T L L+ 
Sbjct: 22  ETIKDNLK----KKSVTDAVTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNG 74

Query: 65  SYFSGQIP--SEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTI 122
           +    ++     ++ L  +  L L +N    + S      +++L KLK L L    +S I
Sbjct: 75  N----KLTDIKPLTNLKNLGWLFLDENKIKDLSS------LKDLKKLKSLSLEHNGISDI 124

Query: 123 VLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQ 182
                L +L   L  L+L   N I  I   L+ L +L +LSL  N  S  I   L+ L +
Sbjct: 125 N---GLVHLPQ-LESLYLGN-NKITDIT-VLSRLTKLDTLSLEDNQIS-DI-VPLAGLTK 176

Query: 183 LYYLNLEQNNLVGGIPD--SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNS 240
           L  L L +N+    I D  +   L  L  L+L   +   +  +    L    T++ +  S
Sbjct: 177 LQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 241 LN 242
           L 
Sbjct: 233 LV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 7e-15
 Identities = 54/395 (13%), Positives = 119/395 (30%), Gaps = 90/395 (22%)

Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
                  +L+    T     T  EL ++  I  +++++     +     L N+  L+L+ 
Sbjct: 20  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 74

Query: 313 NRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFW 372
           N+L   T +   +    L  L L    I +    L+   +L+ L L  N I   I     
Sbjct: 75  NKL---TDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGI-SDING-LV 128

Query: 373 DIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLT 432
            + +  L +L L +N +TD+    L  L                   +L   S+ +N+++
Sbjct: 129 HLPQ--LESLYLGNNKITDIT--VLSRL------------------TKLDTLSLEDNQIS 166

Query: 433 GEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSG 492
             +P +  T   ++ + LS N +S                DL                  
Sbjct: 167 DIVPLAGLTK--LQNLYLSKNHIS----------------DL------------------ 190

Query: 493 LVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFY 552
                           ++LA    L VL + +    +   +  + L     +        
Sbjct: 191 ----------------RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 553 GLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRY 612
                +D           ++  +         +    + +  G   +    +        
Sbjct: 235 TPEIISD----DGDYEKPNVKWHLPEFTNEVSFIFY-QPVTIGKAKARFHGRVTQPLKEV 289

Query: 613 YSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIP 647
           Y+  + + G  ++  + +   +        +G + 
Sbjct: 290 YTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVF 324

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 4e-12
 Identities = 49/197 (24%), Positives = 70/197 (35%), Gaps = 23/197 (11%)

Query: 24  SSLFLLPYLETLNLGSNDFNSSLIS--SGFGRLISLTHLNLSNSYFSGQIPSEISQLSKM 81
             L  L  L  L L  N      I   S    L  L  L+L ++  S  I   +  L ++
Sbjct: 81  KPLTNLKNLGWLFLDENK-----IKDLSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQL 133

Query: 82  LSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLT 141
            SL L  N    I        +  LTKL  L L +  +S IV    LT L      L+L+
Sbjct: 134 ESLYLGNNKITDITV------LSRLTKLDTLSLEDNQISDIVPLAGLTKLQ----NLYLS 183

Query: 142 GCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSF 201
             N I  + A LA L  L  L L          +  S+L     +     +LV   P+  
Sbjct: 184 K-NHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEII 239

Query: 202 VNLTQLSFLDLSWNQLT 218
            +       ++ W+   
Sbjct: 240 SDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 5e-11
 Identities = 50/272 (18%), Positives = 87/272 (31%), Gaps = 59/272 (21%)

Query: 448 IDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPL 507
            +L   S++  + +  ++SI    +  + +    S+  I      +  L LN N+     
Sbjct: 26  DNLKKKSVTDAVTQNELNSID--QIIANNSDIK-SVQGIQ-YLPNVTKLFLNGNKLTDIK 81

Query: 508 PQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKL 567
           P  L N   L  L +  N+I D     L  L +L  L L  N     I + +  V  P+L
Sbjct: 82  P--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNG----ISDINGLVHLPQL 133

Query: 568 RILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMN 627
             L L  N+ T +        L                                      
Sbjct: 134 ESLYLGNNKITDITVLSRLTKLD------------------------------------- 156

Query: 628 ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSS 687
                  +    N+    I  +   L  L+ L  S NH++     +L  L  L+ L+L S
Sbjct: 157 ------TLSLEDNQIS-DIVPL-AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFS 206

Query: 688 NRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIP 719
              + +     ++L   + +  +   L  P  
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 2e-10
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 35/223 (15%)

Query: 493 LVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFY 552
           +   I      +   P      +     N+    + D       +L  +  +I  ++   
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-- 54

Query: 553 GLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRY 612
             I +       P +  L L+ N+ T + P    +NL  +    N    +++ +      
Sbjct: 55  --IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN----KIKDL------ 102

Query: 613 YSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPS 672
            S+   LK +            +    N     I   +  L  L+ L   +N +T    +
Sbjct: 103 -SSLKDLKKLKS----------LSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DIT 147

Query: 673 SLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
            L  LT L++L L  N++   +P  L  L  L  L LS N + 
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (251), Expect = 3e-22
 Identities = 59/289 (20%), Positives = 106/289 (36%), Gaps = 31/289 (10%)

Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
           N   LS  +  +N ++G                L G + N  +      ++     + L 
Sbjct: 9   NNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
               + S+P  +     +T + ++ N L       +     +L+YL    NRL   + L 
Sbjct: 68  RLNLS-SLPDNLPP--QITVLEITQNALI-----SLPELPASLEYLDACDNRL---STLP 116

Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNL 382
                  L  L +    ++  P+       LE++    N++   +P         +L  L
Sbjct: 117 E--LPASLKHLDVDNNQLTMLPELPAL---LEYINADNNQL-TMLPELP-----TSLEVL 165

Query: 383 NLSDNFLTDVEQVPLKNLRFLDLRSNLLQ------GSVMVLPPRLIFFSISNNKLTGEIP 436
           ++ +N LT + ++P ++L  LD+ +NLL+                IFF    N++T  IP
Sbjct: 166 SVRNNQLTFLPELP-ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIP 223

Query: 437 CSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQ 485
            +  +  P   I L +N LS  I E L               F+ S  Q
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.0 bits (241), Expect = 5e-21
 Identities = 73/408 (17%), Positives = 119/408 (29%), Gaps = 69/408 (16%)

Query: 9   LDLSCSWLHGSIPS--NSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSY 66
             LS +  + +I              E   L   + N ++       +   + L L+   
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 67  FSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDY 126
            S  +P  +    ++  L++++N                L  L EL              
Sbjct: 71  LS-SLPDNL--PPQITVLEITQN---------------ALISLPELP------------- 99

Query: 127 SLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYL 186
                 +SL YL     N +  +P   A+   L  L +  N  +  +P   + L+   Y+
Sbjct: 100 ------ASLEYLDACD-NRLSTLPELPAS---LKHLDVDNNQLT-MLPELPALLE---YI 145

Query: 187 NLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIP 246
           N + N L   +P+     T L  L +  NQLT  LP   +   +L  L +S N L  ++P
Sbjct: 146 NADNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPELPE---SLEALDVSTNLLE-SLP 196

Query: 247 SWLFTV---LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLK 303
           +                 R+NR T  IP  I  L    +I L  N LS  I       L 
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI----RESLS 251

Query: 304 NLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKI 363
                          +  D                   E      SQ    +        
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANT 311

Query: 364 YGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQ 411
           +    +   D       +   +  F   V     K     +LR     
Sbjct: 312 FSAFLDRLSD-----TVSARNTSGFREQVAAWLEKLSASAELRQQSFA 354

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.1 bits (231), Expect = 9e-20
 Identities = 53/284 (18%), Positives = 108/284 (38%), Gaps = 22/284 (7%)

Query: 279 NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSAC 338
           N +  + S  N         F+     +   L     +    L       +  +L L+  
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 339 NISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLK 398
           N+S  PD L  Q  +  L++++N +   +P         +L  L+  DN L+ + ++   
Sbjct: 70  NLSSLPDNLPPQ--ITVLEITQNAL-ISLPELP-----ASLEYLDACDNRLSTLPEL-PA 120

Query: 399 NLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
           +L+ LD+ +N L   +  LP  L + +  NN+LT  +P    +   +E + + NN L+  
Sbjct: 121 SLKHLDVDNNQLT-MLPELPALLEYINADNNQLT-MLPELPTS---LEVLSVRNNQLTF- 174

Query: 459 IPECLVDSITLIWLDL---HLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCS 515
           +PE      +L  LD+    L S      +   +    +     +N+    +P+++ +  
Sbjct: 175 LPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLD 230

Query: 516 RLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTD 559
               + + +N +       L+Q             F    G  +
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 3e-13
 Identities = 60/376 (15%), Positives = 117/376 (31%), Gaps = 103/376 (27%)

Query: 372 WDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDL----RSNLLQGSVMVLPPRLIFF 424
             I  +   + N   N ++                 L    R+  +      L  +    
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 425 SISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIP 484
            ++   L+  +P +      I  ++++ N+L   +PE       L +LD   N  + ++P
Sbjct: 65  QLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLP 116

Query: 485 QISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVL 544
           ++ A+   L +L +++NQ    LP+  A    L+ +N  NN+        L  LPEL   
Sbjct: 117 ELPAS---LKHLDVDNNQLTM-LPELPAL---LEYINADNNQ--------LTMLPELP-- 159

Query: 545 ILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQ 604
                                 L +L +  N+ T  LP    ++L+              
Sbjct: 160 --------------------TSLEVLSVRNNQLT-FLPEL-PESLE-------------- 183

Query: 605 YMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLK----MLN 660
                                         +D S+N  E  +P V  + +  +       
Sbjct: 184 -----------------------------ALDVSTNLLE-SLPAVPVRNHHSEETEIFFR 213

Query: 661 FSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ 720
              N +T  IP ++ +L    ++ L  N L  +I   L+        +           Q
Sbjct: 214 CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 721 GPQFNTFQSDSYIGNL 736
               +   +D+     
Sbjct: 273 QNTLHRPLADAVTAWF 288

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 97.0 bits (242), Expect = 3e-21
 Identities = 78/433 (18%), Positives = 141/433 (32%), Gaps = 87/433 (20%)

Query: 159 LTSLSLSYNHFS-GHIPSFLSHLKQLYYLNLEQNNL----VGGIPDSFVNLTQLSFLDLS 213
           + SL +     S       L  L+Q   + L+   L       I  +      L+ L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 214 WNQLTGR----LPSCLKGL-RNLVTLRLSGNSLNGTIPSWLFTVL---PYLEVIHLRDNR 265
            N+L       +   L+     +  L L    L G     L + L   P L+ +HL DN 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 266 FTGSIPSTIFELV-----NLTSIRLSSNNLS--GHIELC-MFARLKNLQYLYLSQNRLSV 317
              +    + E +      L  ++L   +LS      L  +     + + L +S N ++ 
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 318 N------TKLDANSTFPKLLKLGLSACNISE-----FPDFLRSQDRLEWLQLSENKI--- 363
                    L  +    +L  L L +C ++          + S+  L  L L  NK+   
Sbjct: 185 AGVRVLCQGLKDSPC--QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 364 -------YGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPL-------KNLRFLDLRSNL 409
                      P+         L  L + +  +T      L       ++L+ L L  N 
Sbjct: 243 GMAELCPGLLHPSS-------RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 410 LQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSG----PIPECLVD 465
           L         RL+  ++                  +E + + + S +          L  
Sbjct: 296 LGDEGA----RLLCETLLEPGCQ------------LESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 466 SITLIWLDLHLNSFNGS-IPQISA----NGSGLVNLILNDNQF--EG--PLPQSLANCSR 516
           +  L+ L +  N    + + ++       GS L  L L D          L  +L     
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 517 LQVLNVANNRIDD 529
           L+ L+++NN + D
Sbjct: 400 LRELDLSNNCLGD 412

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.9 bits (234), Expect = 2e-20
 Identities = 89/457 (19%), Positives = 139/457 (30%), Gaps = 97/457 (21%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNS---SLISSGFGRLISLTHLNLSNS 65
           LD+ C  L         L LL   + + L            ISS      +L  LNL ++
Sbjct: 8   LDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66

Query: 66  YFSGQIPSEISQLSKML--------SLDLSKNDEVRIESPVWKGLIENL---TKLKELVL 114
                    +  + + L         L L       +       L   L     L+EL L
Sbjct: 67  ELG---DVGVHCVLQGLQTPSCKIQKLSLQNC---CLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 115 SEVDMSTI---VLDYSLTNLSSSLSYLHLTGCNL----IGPIPASLANLPQLTSLSLSYN 167
           S+  +      +L   L +    L  L L  C+L      P+ + L   P    L++S N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 168 HFSG----HIPSFLSHLK-QLYYLNLEQNNL----VGGIPDSFVNLTQLSFLDLSWNQLT 218
             +      +   L     QL  L LE   +       +     +   L  L L  N+L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 219 GR-----LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY---LEVIHLRDNRFTGSI 270
                   P  L     L TL +    +       L  VL     L+ + L  N      
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 271 PSTIFELV-----NLTSIRLSSNNLS--GHIELC-MFARLKNLQYLYLSQNRL------- 315
              + E +      L S+ + S + +         + A+ + L  L +S NRL       
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 316 ------SVNTKLDANSTFPKLLKLGLSACNISE-----FPDFLRSQDRLEWLQLSENKI- 363
                    + L           L L+ C++S+         L +   L  L LS N + 
Sbjct: 361 LCQGLGQPGSVLR---------VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

Query: 364 -YG--------RIPNWFWDIGKDTLYNLNLSDNFLTD 391
             G        R P          L  L L D + ++
Sbjct: 412 DAGILQLVESVRQPGC-------LLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 92.3 bits (230), Expect = 8e-20
 Identities = 91/522 (17%), Positives = 170/522 (32%), Gaps = 120/522 (22%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLS----LDLSKNDEVRIESPVWKGL---IENLTK 108
            +  L++     S    +  ++L  +L     + L       +     K +   +     
Sbjct: 4   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDC---GLTEARCKDISSALRVNPA 57

Query: 109 LKELVLSE---VDMSTIVLDYSLTNLSSSLSYLHLTGCNL----IGPIPASLANLPQLTS 161
           L EL L      D+    +   L   S  +  L L  C L     G + ++L  LP L  
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 162 LSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGR- 220
           L LS N          + L+ L    L+                +L  L L +  L+   
Sbjct: 118 LHLSDNLLGD------AGLQLLCEGLLDPQ-------------CRLEKLQLEYCSLSAAS 158

Query: 221 ---LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFEL 277
              L S L+   +   L +S N +N      L           L+D+             
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG--------LKDSP------------ 198

Query: 278 VNLTSIRLSSNNLS--GHIELC-MFARLKNLQYLYLSQNRLS-------VNTKLDANSTF 327
             L +++L S  ++     +LC + A   +L+ L L  N+L            L  +S  
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR- 257

Query: 328 PKLLKLGLSACNISE-----FPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKD---TL 379
             L  L +  C I+          LR+++ L+ L L+ N++         +   +    L
Sbjct: 258 --LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 380 YNLNLSDNFLTDVEQVPL-------KNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLT 432
            +L +     T              + L  L + +N L+ + +    R +   +      
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV----RELCQGLGQPG-- 369

Query: 433 GEIPCSFCTAAPIEFIDLSNNSLS----GPIPECLVDSITLIWLDLHLNSFNGS-----I 483
                       +  + L++  +S      +   L+ + +L  LDL  N    +     +
Sbjct: 370 -------SV---LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 484 PQISANGSGLVNLILNDNQF----EGPLPQSLANCSRLQVLN 521
             +   G  L  L+L D  +    E  L     +   L+V++
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 90.0 bits (224), Expect = 5e-19
 Identities = 88/435 (20%), Positives = 136/435 (31%), Gaps = 82/435 (18%)

Query: 202 VNLTQLSFLDLSWNQLT-GRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVL---PYLE 257
           ++L  +  LD+   +L+  R    L  L+    +RL    L       + + L   P L 
Sbjct: 1   MSLD-IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 258 VIHLRDNRFTGSIPSTIFELV-----NLTSIRLSSNNLSGH--IELC-MFARLKNLQYLY 309
            ++LR N         + + +      +  + L +  L+G     L      L  LQ L+
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 310 LSQNRLSV-------NTKLDANSTFPKLLKLGLSACNISE-----FPDFLRSQDRLEWLQ 357
           LS N L            LD      +L KL L  C++S          LR++   + L 
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQC---RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 358 LSENKIYGRIPNWFWDIGKD---TLYNLNLSDNFLTDVEQVPL-------KNLRFLDLRS 407
           +S N I            KD    L  L L    +T      L        +LR L L S
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 408 NLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP----IPECL 463
           N L    M               L   +         +  + +    ++      +   L
Sbjct: 237 NKLGDVGMAE-------------LCPGLLHPSSR---LRTLWIWECGITAKGCGDLCRVL 280

Query: 464 VDSITLIWLDLHLNSFNGS-----IPQISANGSGLVNLILNDNQFEG----PLPQSLANC 514
               +L  L L  N             +   G  L +L +    F           LA  
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 515 SRLQVLNVANNRIDDTFPHWLAQL-----PELLVLILRSNKFYGLIGNTDARVI------ 563
             L  L ++NNR++D     L Q        L VL L        + ++    +      
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD----VSDSSCSSLAATLLA 396

Query: 564 FPKLRILDLSRNEFT 578
              LR LDLS N   
Sbjct: 397 NHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 79/471 (16%), Positives = 140/471 (29%), Gaps = 120/471 (25%)

Query: 303 KNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISE-----FPDFLRSQDRLEWLQ 357
            ++Q L +    LS     +      +   + L  C ++E         LR    L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 358 LSENKIYGRIPNWFWDIG-----------KDTLYNLNLSDNFLTDVEQVPL-------KN 399
           L  N++         D+G              +  L+L +  LT      L         
Sbjct: 63  LRSNEL--------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 400 LRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS--- 456
           L+ L L  NLL  + +    +L+   + + +              +E + L   SLS   
Sbjct: 115 LQELHLSDNLLGDAGL----QLLCEGLLDPQCR------------LEKLQLEYCSLSAAS 158

Query: 457 -GPIPECLVDSITLIWLDLHLNSFNGS-----IPQISANGSGLVNLILNDNQF--EG--P 506
             P+   L        L +  N  N +        +  +   L  L L       +    
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPE-----LLVLILRSNKFYGLIGNTDAR 561
           L   +A+ + L+ L + +N++ D     L          L  L +        I      
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG----ITAKGCG 274

Query: 562 VIF------PKLRILDLSRNEFT--GVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYY 613
            +         L+ L L+ NE    G       + L   +                    
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGA------RLLCETLLEPGC--------------- 313

Query: 614 SAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG----R 669
                L+ + V+    +      FS          V+ +   L  L  S+N L       
Sbjct: 314 ----QLESLWVKSCSFTAACCSHFS---------SVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 670 IPSSLR-NLTVLESLDLSSNRL----VGQIPTQLTSLNFLSKLNLSHNQLE 715
           +   L    +VL  L L+   +       +   L + + L +L+LS+N L 
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 42/251 (16%), Positives = 69/251 (27%), Gaps = 47/251 (18%)

Query: 9   LDLSCSWLHGS---IPSNSSLFLLPYLETLNLGSNDFNS---SLISSGFGRLISLTHLNL 62
           L L  + L            L     L TL +      +     +        SL  L+L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 63  SNSYFSGQIPSEISQL-----SKMLSLDLSKNDEVRIESPVWKGLIENL---TKLKELVL 114
           + +    +    + +       ++ SL +         +         L     L EL +
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSC---SFTAACCSHFSSVLAQNRFLLELQI 348

Query: 115 SE---VDMSTIVLDYSLTNLSSSLSYLHLTGCNL----IGPIPASLANLPQLTSLSLSYN 167
           S     D     L   L    S L  L L  C++       + A+L     L  L LS N
Sbjct: 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

Query: 168 HFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLT----GRLPS 223
                  + +  L +     + Q                L  L L     +     RL +
Sbjct: 409 CLG---DAGILQLVES----VRQPG------------CLLEQLVLYDIYWSEEMEDRLQA 449

Query: 224 CLKGLRNLVTL 234
             K   +L  +
Sbjct: 450 LEKDKPSLRVI 460

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 94.9 bits (236), Expect = 4e-21
 Identities = 66/349 (18%), Positives = 114/349 (32%), Gaps = 76/349 (21%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
            IPS+    L      L          +    F     L  + +S +     I +     
Sbjct: 23  EIPSD----LPRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEA----- 72

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
                                  +  NL KL E+ + +               +++L Y+
Sbjct: 73  ----------------------DVFSNLPKLHEIRIEK---------------ANNLLYI 95

Query: 139 HLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFL-SHLKQLYYLNLEQNNLVGGI 197
           +          P +  NLP L  L +S      H+P     H  Q   L+++ N  +  I
Sbjct: 96  N----------PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 198 PD-SFVNLT-QLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
              SFV L+ +   L L+ N +     S   G +         N+L   +P+ +F     
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASG 203

Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIR-LSSNNLSGHIELCMFARLKNLQYLYLSQNR 314
             ++ +   R   S+PS   E  NL  +R  S+ NL    +L    +L  L    L+   
Sbjct: 204 PVILDISRTRIH-SLPSYGLE--NLKKLRARSTYNLK---KLPTLEKLVALMEASLTYPS 257

Query: 315 LSVNTKLDANSTFPKLLKLGLSACNISEF--PDFLRSQDRLEWLQLSEN 361
                   A + + + +      CN S         +Q R +   L+E+
Sbjct: 258 -----HCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAED 301

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 58/338 (17%), Positives = 103/338 (30%), Gaps = 85/338 (25%)

Query: 210 LDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS 269
                +++T  +PS L   RN + LR     L   I    F+    LE I +  N     
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 270 IPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFP 328
           I + +F  L  L  IR+   N   +I    F  L NLQYL +S   +            P
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK---------HLP 120

Query: 329 KLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP-NWFWDIGKDTLYNLNLSDN 387
            + K+                  +   L + +N     I  N F  +  +    L L+ N
Sbjct: 121 DVHKIHSL---------------QKVLLDIQDNINIHTIERNSFVGLSFE-SVILWLNKN 164

Query: 388 FLTDVEQ---VPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAP 444
            + ++        +        +N L+              + N+         F  A+ 
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLE-------------ELPND--------VFHGASG 203

Query: 445 IEFIDLSNNSLSGPIPECLVDSIT-LIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQF 503
              +D+S   +   +P   ++++  L     +       +P                   
Sbjct: 204 PVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP------------------- 240

Query: 504 EGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL 541
                 +L     L   ++        F +W  Q+ EL
Sbjct: 241 ------TLEKLVALMEASLTYPSHCCAFANWRRQISEL 272

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.6 bits (199), Expect = 2e-16
 Identities = 43/208 (20%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 207 LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
              L     +L         G  +L  + +S N +   I + +F+ LP L  I +     
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 267 TGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANS 325
              I    F+ L NL  + +S+  +  H+             L +  N       ++ NS
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINI--HTIERNS 148

Query: 326 TF----PKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP-NWFWDIGKDTLY 380
            F     + + L L+   I E  +   +  +L+ L LS+N     +P + F         
Sbjct: 149 -FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG--PV 205

Query: 381 NLNLSDNFLTDVEQVPLKNLRFLDLRSN 408
            L++S   +  +    L+NL+ L  RS 
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARST 233

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.9 bits (197), Expect = 3e-16
 Identities = 46/326 (14%), Positives = 91/326 (27%), Gaps = 67/326 (20%)

Query: 29  LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSK 88
              LE + +  ND    + +  F  L  L  + +  +       + +  ++         
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA-------NNLLYIN--------- 96

Query: 89  NDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGP 148
                          +NL  L+ L++S                              I  
Sbjct: 97  -----------PEAFQNLPNLQYLLISN---------------------------TGIKH 118

Query: 149 IPA-SLANLPQLTSLSLSYNHFSGHIP--SFLSHLKQLYYLNLEQNNLVGGIPDSFVNLT 205
           +P     +  Q   L +  N     I   SF+    +   L L +N +      +F    
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178

Query: 206 QLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNR 265
                    N L         G    V L +S   ++ ++PS+    L  L      + +
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

Query: 266 FTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANS 325
               +P+ + +LV L    L+                + +  L+   N  S+  +     
Sbjct: 238 ---KLPT-LEKLVALMEASLTYP----SHCCAFANWRRQISELHPICN-KSILRQEVDYM 288

Query: 326 TFPKLLKLGLSACNISEFPDFLRSQD 351
           T  +  +  L+  N S +        
Sbjct: 289 TQARGQRSSLAEDNESSYSRGFDMTY 314

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 45/292 (15%), Positives = 83/292 (28%), Gaps = 58/292 (19%)

Query: 427 SNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQI 486
             +K+T EIP           +      L             L  +++  N     I   
Sbjct: 17  QESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-- 71

Query: 487 SANG--SGLVNL----ILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPE 540
                 S L  L    I   N      P++  N   LQ L ++N  I            +
Sbjct: 72  --ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 541 LLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTST 600
            ++L ++ N     I       +  +  IL L++N     +    F   +          
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQL--------- 179

Query: 601 VQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLN 660
                              +    + N L         ++ F G         +   +L+
Sbjct: 180 ------------------DELNLSDNNNLEEL-----PNDVFHG--------ASGPVILD 208

Query: 661 FSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHN 712
            S   +       L NL  L +    + +   ++PT L  L  L + +L++ 
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 14/206 (6%)

Query: 382 LNLSDNFLTDVEQ---VPLKNLRFLDLRSN----LLQGSVMVLPPRLIFFSISN-NKLTG 433
           L      L  +++       +L  +++  N    +++  V    P+L    I   N L  
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL- 93

Query: 434 EIPCSFCTAAP-IEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANG-- 490
            I        P ++++ +SN  +        + S+  + LD+  N    +I + S  G  
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 491 SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNK 550
              V L LN N  +     +       ++    NN +++            ++L +   +
Sbjct: 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 551 FYGLIGNTDARVIFPKLRILDLSRNE 576
            + L       +   KLR       +
Sbjct: 214 IHSLPSYGLENL--KKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 17/166 (10%)

Query: 564 FPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGID 623
           F  L  +++S+N+   V+    F NL  +          + Y++     +     L+ + 
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP--EAFQNLPNLQYLL 110

Query: 624 VEMNILSIF-----------LVIDFSSNRFEGQIPEVV--GKLNLLKMLNFSHNHLTGRI 670
           +    +              +++D   N     I      G      +L  + N +   I
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 169

Query: 671 PSSLRNLTVLESLDLSSNRLVGQIPTQ-LTSLNFLSKLNLSHNQLE 715
            +S  N T L+ L+LS N  + ++P       +    L++S  ++ 
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 34/184 (18%), Positives = 69/184 (37%), Gaps = 16/184 (8%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRL-ISLTHLNLSNSYF 67
           L +S + +   +P    +  L     L++  N    ++  + F  L      L L+ +  
Sbjct: 109 LLISNTGIK-HLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 68  SGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYS 127
             +I +     +++  L+LS N+ +         +    +    L +S   + ++   Y 
Sbjct: 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPN---DVFHGASGPVILDISRTRIHSLP-SYG 221

Query: 128 LTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187
           L NL   L          +  +P +L  L  L   SL+Y     H  +F +  +Q+  L+
Sbjct: 222 LENLKK-LRARST---YNLKKLP-TLEKLVALMEASLTYPS---HCCAFANWRRQISELH 273

Query: 188 LEQN 191
              N
Sbjct: 274 PICN 277

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 91.7 bits (228), Expect = 2e-20
 Identities = 51/233 (21%), Positives = 83/233 (35%), Gaps = 38/233 (16%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
           S   +N      +  +P ++        L LS+N             +   T+L +L L 
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSL----ATLMPYTRLTQLNLD 63

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS 175
             +++ + +D +L  L      L L+  N +  +P     LP LT L +S+N  +     
Sbjct: 64  RAELTKLQVDGTLPVLG----TLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLR 235
            L  L +L  L L+ N L    P       +L  L L+ N LT                 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT----------------- 161

Query: 236 LSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSN 288
                    +P+ L   L  L+ + L++N    +IP   F    L    L  N
Sbjct: 162 --------ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 56/196 (28%), Positives = 75/196 (38%), Gaps = 22/196 (11%)

Query: 196 GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
            +P         + L LS N L     + L     L  L L    L   +   +   LP 
Sbjct: 28  DLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPV 78

Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           L  + L  N+   S+P     L  LT + +S N L+  + L     L  LQ LYL  N L
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 316 SVNTKLDANSTF---PKLLKLGLSACNISEFPDFL-RSQDRLEWLQLSENKIYGRIPNWF 371
                L         PKL KL L+  N++E P  L    + L+ L L EN +Y  IP  F
Sbjct: 137 ---KTLPPG-LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191

Query: 372 WDIGKDTLYNLNLSDN 387
           +      L    L  N
Sbjct: 192 FGSHL--LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 52/235 (22%), Positives = 80/235 (34%), Gaps = 42/235 (17%)

Query: 250 FTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLY 309
            + +     ++      T ++P  +    + T + LS N L     L        L  L 
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLN 61

Query: 310 LSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPN 369
           L +  L   TKL  + T P L  L LS   +   P   ++   L  L +S N++      
Sbjct: 62  LDRAEL---TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 370 WFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPP-------RLI 422
                                      L  L+ L L+ N L+     LPP       +L 
Sbjct: 119 ALRG-----------------------LGELQELYLKGNELK----TLPPGLLTPTPKLE 151

Query: 423 FFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLN 477
             S++NN LT            ++ + L  NSL   IP+    S  L +  LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 49/251 (19%), Positives = 83/251 (33%), Gaps = 70/251 (27%)

Query: 472 LDLHLNSFNGSIPQ-ISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDT 530
           ++    +   ++P  +  +      L L++N        +L   +RL  LN+    +  T
Sbjct: 15  VNCDKRNL-TALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--T 68

Query: 531 FPHWLAQLPELLVLILRSNK-------FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPT 583
                  LP L  L L  N+          L          P L +LD+S N  T  LP 
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL----------PALTVLDVSFNRLT-SLPL 117

Query: 584 RYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFE 643
              + L                             L+ + ++ N L              
Sbjct: 118 GALRGLGE---------------------------LQELYLKGNELK------------- 137

Query: 644 GQIPE-VVGKLNLLKMLNFSHNHLTGRIPSSL-RNLTVLESLDLSSNRLVGQIPTQLTSL 701
             +P  ++     L+ L+ ++N+LT  +P+ L   L  L++L L  N L   IP      
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194

Query: 702 NFLSKLNLSHN 712
           + L    L  N
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 39/149 (26%), Positives = 51/149 (34%), Gaps = 22/149 (14%)

Query: 449 DLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLP 508
            LS N L       L+    L  L+L       +  Q+      L  L L+ NQ +  LP
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQS-LP 93

Query: 509 QSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNK--------FYGLIGNTDA 560
                   L VL+V+ NR+       L  L EL  L L+ N+                  
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT------ 147

Query: 561 RVIFPKLRILDLSRNEFTGVLPTRYFQNL 589
               PKL  L L+ N  T  LP      L
Sbjct: 148 ----PKLEKLSLANNNLT-ELPAGLLNGL 171

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 45/205 (21%), Positives = 60/205 (29%), Gaps = 47/205 (22%)

Query: 517 LQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNE 576
             +L+++ N +       L     L  L L   +    +         P L  LDLS N+
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----LTKLQVDGTLPVLGTLDLSHNQ 88

Query: 577 FTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVID 636
               LP    Q L A+                                          +D
Sbjct: 89  LQ-SLPLL-GQTLPALTV----------------------------------------LD 106

Query: 637 FSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPT 696
            S NR        +  L  L+ L    N L    P  L     LE L L++N L      
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166

Query: 697 QLTSLNFLSKLNLSHNQLEGPIPQG 721
            L  L  L  L L  N L   IP+G
Sbjct: 167 LLNGLENLDTLLLQENSLYT-IPKG 190

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 90.3 bits (224), Expect = 2e-19
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 11/170 (6%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPA--SLANLPQLTSLSLSYNHFSGHIPS-FLSHLKQLYY 185
            +L S  + L L+  N +  + A  +   L  L SL LS+NH +  I S     +  L Y
Sbjct: 35  QSLPSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRY 92

Query: 186 LNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTI 245
           L+L  N+L       F +L  L  L L  N +     +  + +  L  L LS N ++   
Sbjct: 93  LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 246 PSWLF---TVLPYLEVIHLRDNRFTGSIPSTIFELVNLT--SIRLSSNNL 290
           P  L      LP L ++ L  N+      + + +L       + L +N L
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 87.2 bits (216), Expect = 1e-18
 Identities = 49/181 (27%), Positives = 72/181 (39%), Gaps = 28/181 (15%)

Query: 210 LDLSWNQLTGRLPS--CLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267
           LDLS N L+ RL +      L NL +L LS N LN  I S  F  +P L  + L  N   
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 268 GSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANST 326
            ++   +F  L  L  + L +N++   ++   F  +  LQ LYLSQN++   ++      
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI---SRFPVE-L 155

Query: 327 FPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD 386
                KL                  +L  L LS NK+          +       L L +
Sbjct: 156 IKDGNKL-----------------PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

Query: 387 N 387
           N
Sbjct: 199 N 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 39/201 (19%), Positives = 58/201 (28%), Gaps = 64/201 (31%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSG-FGRLISLTHLNLSNSYFSGQIPSEISQ 77
            + +  +   L  L +L L  N  N   ISS  F  + +L +                  
Sbjct: 53  RLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRY------------------ 92

Query: 78  LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSY 137
                 LDLS N    ++      L  +L  L+ L+L                       
Sbjct: 93  ------LDLSSNHLHTLDE----FLFSDLQALEVLLLYN--------------------- 121

Query: 138 LHLTGCNLIGPIPA-SLANLPQLTSLSLSYNHFSGHIP----SFLSHLKQLYYLNLEQNN 192
                 N I  +   +  ++ QL  L LS N  S   P       + L +L  L+L  N 
Sbjct: 122 ------NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 193 LVGGIPDSFVNLTQLSFLDLS 213
           L          L       L 
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 29/161 (18%)

Query: 563 IFPKLRILDLSRNEFTGVLPTRYFQNLKAMMR---GSNTSTVQVQYMHRFGRYYSAFFTL 619
           +     +LDLS N  + +        L  +       N     + ++        AF  +
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN----HLNFISS-----EAFVPV 87

Query: 620 KGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPS-SLRNLT 678
             +            +D SSN        +   L  L++L   +NH+   +   +  ++ 
Sbjct: 88  PNLRY----------LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMA 136

Query: 679 VLESLDLSSNRLVGQIPTQ----LTSLNFLSKLNLSHNQLE 715
            L+ L LS N++  + P +       L  L  L+LS N+L+
Sbjct: 137 QLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 46/215 (21%), Positives = 66/215 (30%), Gaps = 67/215 (31%)

Query: 515 SRLQVLNVANNRIDDTFPHW-LAQLPELLVLILRSNK--------FYGLIGNTDARVIFP 565
           S   +L++++N +      W   +L  L  L+L  N         F  +          P
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV----------P 88

Query: 566 KLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVE 625
            LR LDLS N     L    F +L+A+                                 
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEV------------------------------- 116

Query: 626 MNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIP----SSLRNLTVLE 681
                    +   +N            +  L+ L  S N ++ R P         L  L 
Sbjct: 117 ---------LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLM 166

Query: 682 SLDLSSNRLVGQIPTQLTSLNFLSK--LNLSHNQL 714
            LDLSSN+L     T L  L    K  L L +N L
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 11/156 (7%)

Query: 445 IEFIDLSNNSLSGPIPECLVDSIT-LIWLDLHLNSFNGSIPQISANG-SGLVNLI---LN 499
              +DLS+N+LS    E     +T L  L L  N     +  IS+     + NL    L+
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH----LNFISSEAFVPVPNLRYLDLS 96

Query: 500 DNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNT- 558
            N          ++   L+VL + NN I     +    + +L  L L  N+         
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 559 DARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMR 594
                 PKL +LDLS N+    LP    Q L A ++
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 634 VIDFSSNRFEGQIPEVV-GKLNLLKMLNFSHNHLTGRIPS-SLRNLTVLESLDLSSNRLV 691
           ++D S N       E    +L  L  L  SHNHL   I S +   +  L  LDLSSN L 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 692 GQIPTQ-LTSLNFLSKLNLSHNQLEGPIPQG 721
             +     + L  L  L L +N +   + + 
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIVV-VDRN 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 652 KLNLLKMLNFSHNHLTGRIPS-SLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLS 710
            +  L+ L+ S NHL   +      +L  LE L L +N +V         +  L KL LS
Sbjct: 86  PVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 711 HNQLEGPIPQGPQFNTFQSDSYIGNL 736
            NQ+    P        +  + +  L
Sbjct: 145 QNQISR-FPVE----LIKDGNKLPKL 165

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 43/167 (25%), Positives = 60/167 (35%), Gaps = 22/167 (13%)

Query: 353 LEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNL 409
              L LS N +      W        L++L LS N L  +     VP+ NLR+LDL SN 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 410 LQGSVMVLPP-------RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPEC 462
           L      L          L    + NN +      +F   A ++ + LS N +S   P  
Sbjct: 100 LH----TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVE 154

Query: 463 LVDSIT----LIWLDLHLNSFNGSIPQISANGSGLV--NLILNDNQF 503
           L+        L+ LDL  N                V   L L++N  
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 42/203 (20%), Positives = 68/203 (33%), Gaps = 54/203 (26%)

Query: 381 NLNLSDNFLTDVEQ----VPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIP 436
            L+LS N L+ +        L NL  L L  N L      +     F  + N        
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----FISSE-AFVPVPN-------- 89

Query: 437 CSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNL 496
                   + ++DLS+N L                  L    F+            L  L
Sbjct: 90  --------LRYLDLSSNHLH----------------TLDEFLFSDL--------QALEVL 117

Query: 497 ILNDNQFEGPLPQSLANCSRLQVLNVANNRI----DDTFPHWLAQLPELLVLILRSNKFY 552
           +L +N        +  + ++LQ L ++ N+I     +       +LP+L++L L SNK  
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI-KDGNKLPKLMLLDLSSNKLK 176

Query: 553 GLIGNTDARVIFPKLRILDLSRN 575
            L      ++       L L  N
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNN 199

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 154 ANLP-QLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL 212
            NLP  +T + L  N      P   S  K+L  ++L  N +    PD+F  L  L+ L L
Sbjct: 28  TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87

Query: 213 SWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPS 272
             N++T    S  +GL +L  L L+ N +N  +    F  L  L ++ L DN+   +I  
Sbjct: 88  YGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145

Query: 273 TIFE-LVNLTSIRLSSN 288
             F  L  + ++ L+ N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 117 VDMSTIVLDY-SLTNLSS-------SLSYLHLTGCNLIGPIPA-SLANLPQLTSLSLSYN 167
             ++ I L+  ++  +          L  + L+  N I  +   +   L  L SL L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGN 90

Query: 168 HFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKG 227
             +    S    L  L  L L  N +     D+F +L  L+ L L  N+L          
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 228 LRNLVTLRLSGN 239
           LR + T+ L+ N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 34/157 (21%)

Query: 257 EVIHLRDNRFTGSIPSTIF-ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
             I L  N     IP   F     L  I LS+N +S  +    F  L++L  L L  N++
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 316 SVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNW-FWDI 374
              T+L  +  F  L                      L+ L L+ NKI   +    F D+
Sbjct: 93  ---TELPKS-LFEGLFS--------------------LQLLLLNANKI-NCLRVDAFQDL 127

Query: 375 GKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSN 408
               L  L+L DN L  + +    PL+ ++ + L  N
Sbjct: 128 HN--LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 1/88 (1%)

Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
            I    N  +   P        L+ ++ S+N ++   P + + L  L SL L  N++   
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIPQG 721
             +    L  L  L L+ N++   +   
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINC-LRVD 122

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 87.7 bits (218), Expect = 3e-19
 Identities = 61/217 (28%), Positives = 88/217 (40%), Gaps = 39/217 (17%)

Query: 196 GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
            IP           LDL  N+L+         L  L  L L+ N L  T+P+ +F  L  
Sbjct: 34  NIP------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 256 LEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNR 314
           LE + + DN+   ++P  +F+ LVNL  +RL  N L   +   +F  L  L YL L  N 
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144

Query: 315 LSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDI 374
           L     L     F KL                      L+ L+L  N++  R+P   +D 
Sbjct: 145 L---QSLPKG-VFDKLTS--------------------LKELRLYNNQL-KRVPEGAFD- 178

Query: 375 GKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSN 408
               L  L L +N L  V +     L+ L+ L L+ N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 43/225 (19%)

Query: 19  SIPSNSSLFLLPY-LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI-S 76
           +IPSN     +P   + L+L SN   SSL S  F RL  L  L L+++     +P+ I  
Sbjct: 30  AIPSN-----IPADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK 82

Query: 77  QLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLS 136
           +L  + +L ++ N   ++++ +  G+ + L  L EL L                      
Sbjct: 83  ELKNLETLWVTDN---KLQA-LPIGVFDQLVNLAELRLDR-------------------- 118

Query: 137 YLHLTGCNLIGPIPASL-ANLPQLTSLSLSYNHFSGHIPSFL-SHLKQLYYLNLEQNNLV 194
                  N +  +P  +  +L +LT LSL YN     +P  +   L  L  L L  N L 
Sbjct: 119 -------NQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK 170

Query: 195 GGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGN 239
                +F  LT+L  L L  NQL          L  L  L+L  N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 60/230 (26%), Positives = 85/230 (36%), Gaps = 46/230 (20%)

Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           +     + T +IPS I    +   + L SN LS  +    F RL  L+ LYL+ N+L   
Sbjct: 21  VDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--- 73

Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT 378
             L A   F +L                      LE L +++NK+       F  +    
Sbjct: 74  QTLPAG-IFKEL--------------------KNLETLWVTDNKLQALPIGVFDQLVN-- 110

Query: 379 LYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQGSVMVLPPR-------LIFFSISN 428
           L  L L  N L  +       L  L +L L  N LQ     LP         L    + N
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ----SLPKGVFDKLTSLKELRLYN 166

Query: 429 NKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT-LIWLDLHLN 477
           N+L      +F     ++ + L NN L   +PE   DS+  L  L L  N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 154 ANLPQ-LTSLSLSYNHFSGHIPS-FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLD 211
            ++PQ    L L+ N F+    +     L QL  +N   N +      +F   + ++ + 
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 212 LSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIP 271
           L+ N+L        KGL +L TL L  N +   + +  F  L  + ++ L DN+ T ++ 
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 272 STIFE-LVNLTSIRLSSN 288
              F+ L +L+++ L +N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 82.4 bits (204), Expect = 7e-18
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 186 LNLEQNNLVGGIPD-SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT 244
           L L  N          F  L QL  ++ S N++T       +G   +  + L+ N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLK 303
           +   +F  L  L+ + LR NR T  + +  F  L ++  + L  N ++  +    F  L 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 304 NLQYLYLSQN 313
           +L  L L  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 21/142 (14%)

Query: 230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSN 288
               LRL+ N       + +F  LP L  I+  +N+ T  I    FE    +  I L+SN
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 289 NLSGHIELCMFARLKNLQYLYLSQNRLS-----VNTKLDANSTFPKLLKLGLSACNISEF 343
            L   ++  MF  L++L+ L L  NR++         L        +  L L    I+  
Sbjct: 92  RLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL------SSVRLLSLYDNQITTV 144

Query: 344 P----DFLRSQDRLEWLQLSEN 361
                D L S   L  L L  N
Sbjct: 145 APGAFDTLHS---LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 15/147 (10%)

Query: 269 SIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTF- 327
            IP  I        +RL++N  +      +F +L  L+ +  S N++   T ++    F 
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI---TDIEEG-AFE 78

Query: 328 --PKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNL 384
               + ++ L++  +        +  + L+ L L  N+I   + N  +  G  ++  L+L
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFI-GLSSVRLLSL 136

Query: 385 SDNFLTDVEQ---VPLKNLRFLDLRSN 408
            DN +T V       L +L  L+L +N
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 42/225 (18%), Positives = 69/225 (30%), Gaps = 84/225 (37%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
            IP +    +  Y   L L +N+F     +  F +L  L  +N SN           +++
Sbjct: 25  KIPEH----IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-----------NKI 69

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
           +              IE     G  E  + + E++L+                       
Sbjct: 70  TD-------------IEE----GAFEGASGVNEILLTS---------------------- 90

Query: 139 HLTGCNLIGPIPASL-ANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGI 197
                N +  +   +   L  L +L L  N  +  +                        
Sbjct: 91  -----NRLENVQHKMFKGLESLKTLMLRSNRIT-CVG----------------------- 121

Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
            DSF+ L+ +  L L  NQ+T   P     L +L TL L  N  N
Sbjct: 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 652 KLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSH 711
           KL  L+ +NFS+N +T     +    + +  + L+SNRL          L  L  L L  
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114

Query: 712 NQLEGPIPQG 721
           N++   +   
Sbjct: 115 NRITC-VGND 123

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 48/260 (18%), Positives = 97/260 (37%), Gaps = 21/260 (8%)

Query: 153 LANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL 212
                +    +L     +       + L  +  +    +++          L  ++ L L
Sbjct: 20  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFL 75

Query: 213 SWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPS 272
           + N+LT   P  L  L+NL  L L  N +           L  L+ + L  N  +  I  
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGIS-DING 129

Query: 273 TIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK 332
            +  L  L S+ L +N ++   ++ + +RL  L  L L  N++   + +   +   KL  
Sbjct: 130 -LVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQN 182

Query: 333 LGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDV 392
           L LS  +IS+    L     L+ L+L   +   +  N   ++       +  +D  L   
Sbjct: 183 LYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNL--VVPNTVKNTDGSLVTP 239

Query: 393 EQV-PLKNLRFLDLRSNLLQ 411
           E +    +    +++ +L +
Sbjct: 240 EIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.0 bits (216), Expect = 7e-19
 Identities = 63/263 (23%), Positives = 91/263 (34%), Gaps = 26/263 (9%)

Query: 29  LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSK 88
                  NL       +        L S+  +  +NS     +   I  L  +  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 89  NDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGP 148
           N    I+       + NL  L  L L E  +  +    SL +L   L  L L   N I  
Sbjct: 78  NKLTDIKP------LANLKNLGWLFLDENKVKDLS---SLKDL-KKLKSLSL-EHNGISD 126

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS 208
           I   L +LPQL SL L  N  +    + LS L +L  L+LE N +          LT+L 
Sbjct: 127 ING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQ 181

Query: 209 FLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTG 268
            L LS N ++      L GL+NL  L L         P    + L     +   D     
Sbjct: 182 NLYLSKNHISD--LRALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 269 SIPSTIFELVNLTSIRLSSNNLS 291
             P  I +  +     +  +   
Sbjct: 239 --PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 59/287 (20%), Positives = 107/287 (37%), Gaps = 28/287 (9%)

Query: 110 KELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHF 169
            E +     +  I  D +           +L   ++   +      L  +  +  + +  
Sbjct: 5   SETITVPTPIKQIFSDDAFAETI----KDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 58

Query: 170 SGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLR 229
              +   + +L  +  L L  N L    P +  NL  L +L L  N++     S LK L+
Sbjct: 59  K-SV-QGIQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKD--LSSLKDLK 112

Query: 230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNN 289
            L +L L  N ++  I       LP LE ++L +N+ T    + +  L  L ++ L  N 
Sbjct: 113 KLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ 167

Query: 290 LSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRS 349
           +S   ++   A L  LQ LYLS+N +   + L A +    L  L L +      P   +S
Sbjct: 168 IS---DIVPLAGLTKLQNLYLSKNHI---SDLRALAGLKNLDVLELFSQECLNKPINHQS 221

Query: 350 Q-DRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV 395
                  ++ ++  +    P    D G       N+  +      +V
Sbjct: 222 NLVVPNTVKNTDGSLVT--PEIISDDG--DYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.3 bits (201), Expect = 6e-17
 Identities = 54/261 (20%), Positives = 103/261 (39%), Gaps = 22/261 (8%)

Query: 103 IENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSL 162
            +   +  +  L +  ++  V    L +    +  +     + I  +   +  LP +T L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNS----IDQIIANNSD-IKSVQG-IQYLPNVTKL 73

Query: 163 SLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLP 222
            L+ N  +  I   L++LK L +L L++N +      S  +L +L  L L  N ++    
Sbjct: 74  FLNGNKLT-DI-KPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGIS--DI 127

Query: 223 SCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTS 282
           + L  L  L +L L  N +         + L  L+ + L DN+ +  I   +  L  L +
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQN 182

Query: 283 IRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISE 342
           + LS N++S   +L   A LKNL  L L       N  ++  S       +  +  ++  
Sbjct: 183 LYLSKNHIS---DLRALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 343 FPDFLRSQDRLEWLQLSENKI 363
            P+ +      E   +  +  
Sbjct: 239 -PEIISDDGDYEKPNVKWHLP 258

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 61/296 (20%), Positives = 108/296 (36%), Gaps = 31/296 (10%)

Query: 223 SCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTS 282
                    +   L   S+   +       L  ++ I   ++    S+   I  L N+T 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTK 72

Query: 283 IRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISE 342
           + L+ N L+   ++   A LKNL +L+L +N++     L +     KL  L L    IS+
Sbjct: 73  LFLNGNKLT---DIKPLANLKNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHNGISD 126

Query: 343 FPDFLRSQDRLEWLQLSENKIYGRIPNWFWDI----GKDTLYNLNLSDNFLTDVEQV-PL 397
             + L    +LE L L  NKI         DI        L  L+L DN ++D+  +  L
Sbjct: 127 I-NGLVHLPQLESLYLGNNKIT--------DITVLSRLTKLDTLSLEDNQISDIVPLAGL 177

Query: 398 KNLRFLDLRSNLLQGSVMVLP--PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSL 455
             L+ L L  N +   +  L     L    + + +   +             +  ++ SL
Sbjct: 178 TKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

Query: 456 SGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSL 511
               PE + D       ++  +       ++S      V +     +F G + Q L
Sbjct: 237 VT--PEIISDDGDYEKPNVKWH-LPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 289

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 51/201 (25%), Positives = 76/201 (37%), Gaps = 23/201 (11%)

Query: 20  IPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIP--SEISQ 77
           I S   +  LP +  L L  N             L +L  L L  +    ++   S +  
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDEN----KVKDLSSLKD 110

Query: 78  LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSY 137
           L K+ SL L  N    I        + +L +L+ L L    ++ I     L+ L+  L  
Sbjct: 111 LKKLKSLSLEHNGISDING------LVHLPQLESLYLGNNKITDIT---VLSRLTK-LDT 160

Query: 138 LHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGI 197
           L L   N I  I   LA L +L +L LS NH S  +   L+ LK L  L L     +   
Sbjct: 161 LSLED-NQISDIV-PLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKP 216

Query: 198 PDSFVNLTQLSFLDLSWNQLT 218
            +   NL   + +  +   L 
Sbjct: 217 INHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 48/192 (25%), Positives = 70/192 (36%), Gaps = 19/192 (9%)

Query: 24  SSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLS 83
             L  L  L  L L  N        S    L  L  L+L ++  S  I   +  L ++ S
Sbjct: 84  KPLANLKNLGWLFLDENKVKDL---SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLES 138

Query: 84  LDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGC 143
           L L  N    I        +  LTKL  L L +  +S IV    L  L+  L  L+L+  
Sbjct: 139 LYLGNNKITDITV------LSRLTKLDTLSLEDNQISDIV---PLAGLTK-LQNLYLSK- 187

Query: 144 NLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVN 203
           N I  + A LA L  L  L L          +  S+L     +     +LV   P+   +
Sbjct: 188 NHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISD 244

Query: 204 LTQLSFLDLSWN 215
                  ++ W+
Sbjct: 245 DGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 40/252 (15%), Positives = 78/252 (30%), Gaps = 36/252 (14%)

Query: 300 ARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLS 359
                     L +  +   T     +    + ++  +  +I      ++    +  L L+
Sbjct: 21  DAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLN 76

Query: 360 ENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPP 419
            NK+   I           L  L L +N + D+    LK+L                   
Sbjct: 77  GNKL-TDIKP---LANLKNLGWLFLDENKVKDLS--SLKDL------------------K 112

Query: 420 RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSF 479
           +L   S+ +N ++            +E + L NN ++      L     L  L L  N  
Sbjct: 113 KLKSLSLEHNGISDINGLVHLPQ--LESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI 168

Query: 480 NGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLP 539
           +  I  ++     L NL L+ N       ++LA    L VL + +    +   +  + L 
Sbjct: 169 S-DIVPLAGLTK-LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 540 ELLVLILRSNKF 551
               +       
Sbjct: 225 VPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 17/216 (7%)

Query: 379 LYNLNLSDNFLTDVE-QVPLKNLRFLDLRSNLLQG-SVMVLPPRLIFFSISNNKLTGEIP 436
               NL    +TD   Q  L ++  +   ++ ++    +   P +    ++ NKLT   P
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP 85

Query: 437 CSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNL 496
            +      + ++ L  N +       L D   L  L L  N  +  I  +      L +L
Sbjct: 86  LANLKN--LGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGIS-DINGLVHL-PQLESL 139

Query: 497 ILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIG 556
            L +N+        L+  ++L  L++ +N+I D  P  LA L +L  L L  N     I 
Sbjct: 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH----IS 191

Query: 557 NTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAM 592
           +  A      L +L+L   E     P  +  NL   
Sbjct: 192 DLRALAGLKNLDVLELFSQECLN-KPINHQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 35/249 (14%)

Query: 469 LIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID 528
            I  +L   S   ++ Q     + +  +I N++  +    Q +     +  L +  N++ 
Sbjct: 26  TIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT 81

Query: 529 DTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQN 588
           D  P  LA L  L  L L  NK    + +  +     KL+ L L  N  + +    +   
Sbjct: 82  DIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 589 LKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPE 648
           L+++  G+N    ++  +       S    L  + +E N +S     D            
Sbjct: 136 LESLYLGNN----KITDITVL----SRLTKLDTLSLEDNQIS-----DIVP--------- 173

Query: 649 VVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLN 708
            +  L  L+ L  S NH++     +L  L  L+ L+L S   + +     ++L   + + 
Sbjct: 174 -LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 709 LSHNQLEGP 717
            +   L  P
Sbjct: 231 NTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 511 LANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRIL 570
               +     N+    + D       +L  +  +I  ++    + G        P +  L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY----LPNVTKL 73

Query: 571 DLSRNEFTGVLPTRYFQNLKAMMRGSN--TSTVQVQYMHRFGRYYSAFFTLKGIDVEMNI 628
            L+ N+ T + P    +NL  +    N       ++ + +          LK + +E N 
Sbjct: 74  FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKK----------LKSLSLEHNG 123

Query: 629 LSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSN 688
           +S                   +  L  L+ L   +N +T    + L  LT L++L L  N
Sbjct: 124 ISDI---------------NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 166

Query: 689 RLVGQIPTQLTSLNFLSKLNLSHNQLE 715
           ++   +P  L  L  L  L LS N + 
Sbjct: 167 QISDIVP--LAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 33/192 (17%)

Query: 524 NNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPT 583
              I   F        E +   L+       +   +       +  +  + ++   V   
Sbjct: 11  PTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQNE----LNSIDQIIANNSDIKSVQGI 64

Query: 584 RYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFE 643
           +Y  N+  +    N    ++  +       +    L  + ++ N +              
Sbjct: 65  QYLPNVTKLFLNGN----KLTDIKPL----ANLKNLGWLFLDENKVKDL----------- 105

Query: 644 GQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNF 703
                 +  L  LK L+  HN ++  I + L +L  LESL L +N++     T L+ L  
Sbjct: 106 ----SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTK 157

Query: 704 LSKLNLSHNQLE 715
           L  L+L  NQ+ 
Sbjct: 158 LDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 52/298 (17%), Positives = 99/298 (33%), Gaps = 69/298 (23%)

Query: 419 PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNS 478
              I  ++    +T  +  +   +  I+ I  +N+ +     + +     +  L L+ N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNK 79

Query: 479 FNGSIPQIS--ANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLA 536
               +  I   AN   L  L L++N+ +     SL +  +L+ L++ +N I D     L 
Sbjct: 80  ----LTDIKPLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDING--LV 131

Query: 537 QLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGS 596
            LP+L  L L +NK    I +        KL  L L  N+ + ++P      L+      
Sbjct: 132 HLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ------ 181

Query: 597 NTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEV--VGKLN 654
                                                 +  S N     I ++  +  L 
Sbjct: 182 -------------------------------------NLYLSKN----HISDLRALAGLK 200

Query: 655 LLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHN 712
            L +L         +  +   NL V  ++  +   LV   P  ++      K N+  +
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 85.8 bits (213), Expect = 7e-19
 Identities = 39/198 (19%), Positives = 80/198 (40%), Gaps = 13/198 (6%)

Query: 156 LPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIP-DSFVNLTQLSFLDLSW 214
            P   +L L   H         S+L  +  + +  +  +  +   SF NL++++ +++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 215 NQLTGRLPS-CLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPST 273
            +    +    LK L  L  L +    L                ++ + DN +  SIP  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 274 IFE-LVNLT-SIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLL 331
            F+ L N T +++L +N  +  ++   F   K L  +YL++N+    T +D +  F  + 
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTK-LDAVYLNKNKYL--TVIDKD-AFGGVY 204

Query: 332 K----LGLSACNISEFPD 345
                L +S  +++  P 
Sbjct: 205 SGPSLLDVSQTSVTALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 2/207 (0%)

Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
                 L L    L          L N+  + +S +     + S  F  L  +  I +R+
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
            R    I     + L  L  + + +  L    +L           L ++ N    +  ++
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 323 ANSTFPKLLK-LGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYN 381
           A          L L     +    +  +  +L+ + L++NK    I    +         
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 382 LNLSDNFLTDVEQVPLKNLRFLDLRSN 408
           L++S   +T +    L++L+ L  R+ 
Sbjct: 210 LDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 80.0 bits (198), Expect = 7e-17
 Identities = 52/236 (22%), Positives = 94/236 (39%), Gaps = 20/236 (8%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
             ++C  +   IPS     L P  +TL L       ++ S  F  L +++ + +S     
Sbjct: 16  FRVTCKDIQ-RIPS-----LPPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 69  GQIPSEI-SQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYS 127
            Q+ S     LSK+  +++     +    P     ++ L  LK L +    +     D +
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDP---DALKELPLLKFLGIFNTGLKMFP-DLT 124

Query: 128 LTNLSSSLSYLHLTGCNLIGPIPA-SLANLP-QLTSLSLSYNHFSGHIPSFLSHLKQLYY 185
               +     L +T    +  IP  +   L  +  +L L  N F+  +  +  +  +L  
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183

Query: 186 LNLEQNNLVGGIP-DSFVNL-TQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGN 239
           + L +N  +  I  D+F  + +  S LD+S   +T  LPS  KGL +L  L     
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 31/250 (12%), Positives = 67/250 (26%), Gaps = 72/250 (28%)

Query: 482 SIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVA-NNRIDDTFPHWLAQLPE 540
            IP +  +      L L +         + +N   +  + V+ +  +     H    L +
Sbjct: 25  RIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81

Query: 541 LLVLILRSNK---------FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKA 591
           +  + +R+ +            L          P L+ L +               +   
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKEL----------PLLKFLGIFNTGLKMFPDLTKVYSTDI 131

Query: 592 MMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVV- 650
                                                     +++ + N +   IP    
Sbjct: 132 F----------------------------------------FILEITDNPYMTSIPVNAF 151

Query: 651 -GKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIP----TQLTSLNFLS 705
            G  N    L   +N  T  +     N T L+++ L+ N+ +  I       + S    S
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG--PS 208

Query: 706 KLNLSHNQLE 715
            L++S   + 
Sbjct: 209 LLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 42/270 (15%), Positives = 92/270 (34%), Gaps = 71/270 (26%)

Query: 279 NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSAC 338
           +  +++L   +L   I    F+ L N+  +Y+S +      +L+++ +F  L        
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID--VTLQQLESH-SFYNL-------- 79

Query: 339 NISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLK 398
                        ++  +++   +    I         D L  L                
Sbjct: 80  ------------SKVTHIEIRNTRNLTYIDP-------DALKEL---------------P 105

Query: 399 NLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
            L+FL + +  L+    + P     +S     +                +++++N     
Sbjct: 106 LLKFLGIFNTGLK----MFPDLTKVYSTDIFFI----------------LEITDNPYMTS 145

Query: 459 IPECLVDSIT--LIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQ-SLAN-C 514
           IP      +    + L L+ N F  S+   + NG+ L  + LN N++   + + +     
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 515 SRLQVLNVANNRIDDTFPHWLAQLPELLVL 544
           S   +L+V+   +       L  L EL+  
Sbjct: 205 SGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 21/195 (10%)

Query: 76  SQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLS--S 133
           S     L+  L ++    I           +  L  + L+ ++++       LT +    
Sbjct: 20  STFKAYLNGLLGQSSTANIT-------EAQMNSLTYITLANINVT------DLTGIEYAH 66

Query: 134 SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNL 193
           ++  L +   +     P  ++ L  L  L +     +      LS L  L  L++  +  
Sbjct: 67  NIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 194 VGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVL 253
              I      L +++ +DLS+N     +   LK L  L +L +  + ++           
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG---IEDF 180

Query: 254 PYLEVIHLRDNRFTG 268
           P L  ++       G
Sbjct: 181 PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 17/190 (8%)

Query: 154 ANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPD--SFVNLTQLSFLD 211
           +      +  L  +  +       + +  L Y+ L   N    + D         +  L 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN----VTDLTGIEYAHNIKDLT 72

Query: 212 LSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIP 271
           ++    T    + + GL NL  LR+ G  +       L   L  L ++ +  +    SI 
Sbjct: 73  INNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSIL 129

Query: 272 STIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLL 331
           + I  L  + SI LS N     I       L  L+ L +  + +           FPKL 
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGV---HDYRGIEDFPKLN 184

Query: 332 KLGLSACNIS 341
           +L   +  I 
Sbjct: 185 QLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 27/215 (12%), Positives = 66/215 (30%), Gaps = 62/215 (28%)

Query: 29  LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSK 88
           +  L  + L + +       +G     ++  L ++N           +  +         
Sbjct: 43  MNSLTYITLANINVTDL---TGIEYAHNIKDLTINN--------IHATNYNP-------- 83

Query: 89  NDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGP 148
                         I  L+ L+ L +                           G ++   
Sbjct: 84  --------------ISGLSNLERLRIM--------------------------GKDVTSD 103

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS 208
              +L+ L  LT L +S++     I + ++ L ++  ++L  N  +  I      L +L 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 209 FLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNG 243
            L++ ++ +       ++    L  L     ++ G
Sbjct: 163 SLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 30/218 (13%), Positives = 64/218 (29%), Gaps = 46/218 (21%)

Query: 180 LKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGN 239
            K      L Q++       +   +  L+++ L+   +T    + ++   N+  L ++  
Sbjct: 22  FKAYLNGLLGQSST---ANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI 76

Query: 240 SLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMF 299
                 P    + L  LE + +     T      +  L +LT + +S +       L   
Sbjct: 77  HATNYNP---ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSILTKI 132

Query: 300 ARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLS 359
             L  +  + LS N     T +    T P+L                       + L + 
Sbjct: 133 NTLPKVNSIDLSYNGAI--TDIMPLKTLPEL-----------------------KSLNIQ 167

Query: 360 ENKIYGRIPNWFWDI----GKDTLYNLNLSDNFLTDVE 393
            + ++        D         L  L      +   +
Sbjct: 168 FDGVH--------DYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 27/171 (15%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 381 NLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQG-SVMVLPPRLIFFSISNNKLTGEIPCSF 439
           N  L  +   ++ +  + +L ++ L +  +   + +     +   +I+N   T   P S 
Sbjct: 27  NGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISG 86

Query: 440 CTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILN 499
            +   +E + +    ++      L    +L  LD+  ++ + SI         + ++ L+
Sbjct: 87  LSN--LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 500 DNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNK 550
            N     +   L     L+ LN+  + + D     +   P+L  L   S  
Sbjct: 145 YNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 21/155 (13%), Positives = 55/155 (35%), Gaps = 5/155 (3%)

Query: 377 DTLYNLNLSDNFLTDVEQV-PLKNLRFLDLRSNLLQG-SVMVLPPRLIFFSISNNKLTGE 434
           ++L  + L++  +TD+  +    N++ L + +      + +     L    I    +T +
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD 103

Query: 435 IPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLV 494
              +      +  +D+S+++    I   +     +  +DL  N     I  +      L 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTL-PELK 162

Query: 495 NLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDD 529
           +L +  +         + +  +L  L   +  I  
Sbjct: 163 SLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 34/148 (22%)

Query: 24  SSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLS 83
           + +  L  LE L +   D  S  I +    L SLT L++S+S     I ++I+ L K+ S
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 84  LDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGC 143
           +DLS N  +    P     ++ L +LK L +             + +             
Sbjct: 141 IDLSYNGAITDIMP-----LKTLPELKSLNIQ---------FDGVHDYR----------- 175

Query: 144 NLIGPIPASLANLPQLTSLSLSYNHFSG 171
                    + + P+L  L        G
Sbjct: 176 --------GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 13/164 (7%)

Query: 299 FARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQL 358
            A++ +L Y+ L+   +   T L        +  L ++  + + + + +     LE L++
Sbjct: 40  EAQMNSLTYITLANINV---TDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRI 95

Query: 359 SENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP---LKNLRFLDLRSNLLQGSVM 415
               +          +    L  L++S +   D        L  +  +DL  N     +M
Sbjct: 96  MGKDVTSDKIPNLSGLTS--LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 416 VLP--PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSG 457
            L   P L   +I  + +             +  +   + ++ G
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYRGIEDFPK--LNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 635 IDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQI 694
           +              +  L  L +L+ SH+     I + +  L  + S+DLS N  +  I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 695 PTQLTSLNFLSKLNLSHNQL 714
              L +L  L  LN+  + +
Sbjct: 153 -MPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 648 EVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKL 707
             +  L+ L+ L      +T     +L  LT L  LD+S +     I T++ +L  ++ +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 708 NLSHNQL 714
           +LS+N  
Sbjct: 142 DLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 11/148 (7%)

Query: 445 IEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQIS--ANGSGLVNLILNDNQ 502
           + +I L+N +++      +  +  +  L ++           +  +  S L  L +    
Sbjct: 46  LTYITLANINVTDLTG--IEYAHNIKDLTINNIH----ATNYNPISGLSNLERLRIMGKD 99

Query: 503 FEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARV 562
                  +L+  + L +L+++++  DD+    +  LP++  + L  N     I +     
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG---AITDIMPLK 156

Query: 563 IFPKLRILDLSRNEFTGVLPTRYFQNLK 590
             P+L+ L++  +          F  L 
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIEDFPKLN 184

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 652 KLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSH 711
             + +K L  ++ H T    + +  L+ LE L +    +       L+ L  L+ L++SH
Sbjct: 64  YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 712 NQLEGPIPQG 721
           +  +  I   
Sbjct: 122 SAHDDSILTK 131

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 83.2 bits (206), Expect = 6e-18
 Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 4/155 (2%)

Query: 160 TSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG 219
             L L     +    +    L +L +LNL+ N L       F +LT+L  L L+ NQL  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 220 RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LV 278
                   L  L  L L GN L  ++PS +F  L  L+ + L  N+   SIP+  F+ L 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 279 NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
           NL ++ LS+N L   +    F RL  LQ + L  N
Sbjct: 156 NLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 196 GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
           GIP      T+   LDL    L     +  +GL  L  L L  N L  T+ + +F  L  
Sbjct: 32  GIPAD----TEK--LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTE 84

Query: 256 LEVIHLRDNRFTGSIPSTIF-ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNR 314
           L  + L +N+   S+P  +F  L  L  + L  N L   +   +F RL  L+ L L+ N+
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQ 142

Query: 315 LS 316
           L 
Sbjct: 143 LQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 39/188 (20%)

Query: 33  ETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEI-SQLSKMLSLDLSKNDE 91
           E L+L S    ++L  + F  L  LT LNL  +     + + +   L+++ +L L+ N  
Sbjct: 38  EKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN-- 93

Query: 92  VRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPA 151
            ++ S +  G+ ++LT+L +L L                             N +  +P+
Sbjct: 94  -QLAS-LPLGVFDHLTQLDKLYLGG---------------------------NQLKSLPS 124

Query: 152 SL-ANLPQLTSLSLSYNHFSGHIPS--FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS 208
            +   L +L  L L+ N     IP+  F   L  L  L+L  N L      +F  L +L 
Sbjct: 125 GVFDRLTKLKELRLNTNQLQS-IPAGAF-DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182

Query: 209 FLDLSWNQ 216
            + L  NQ
Sbjct: 183 TITLFGNQ 190

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 80.4 bits (199), Expect = 9e-17
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 14/190 (7%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
            +  +     +L     +         L  +  +  + +     +     +L  + YL L
Sbjct: 15  DDAFAETIKANLKK-KSVTDAVTQN-ELNSIDQIIANNSDIKS-VQGI-QYLPNVRYLAL 70

Query: 189 EQNNL--VGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIP 246
             N L  +     +   LT L++L L+ NQL          L NL  L L  N L  ++P
Sbjct: 71  GGNKLHDIS----ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLP 125

Query: 247 SWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNL 305
             +F  L  L  ++L  N+   S+P  +F+ L NLT + LS N L   +   +F +L  L
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQL 183

Query: 306 QYLYLSQNRL 315
           + L L QN+L
Sbjct: 184 KDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 14/202 (6%)

Query: 120 STIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLP------QLTSLSLSYNHFSGHI 173
            TI  +    +++ +++   L   + I    + + ++        +  L+L  N     I
Sbjct: 20  ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-I 78

Query: 174 PSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPS-CLKGLRNLV 232
            +    L  L YL L  N L       F  LT L  L L  NQL   LP      L NL 
Sbjct: 79  SAL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLT 136

Query: 233 TLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLS 291
            L L+ N L  ++P  +F  L  L  + L  N+   S+P  +F+ L  L  +RL  N L 
Sbjct: 137 YLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 292 GHIELCMFARLKNLQYLYLSQN 313
             +   +F RL +LQY++L  N
Sbjct: 195 S-VPDGVFDRLTSLQYIWLHDN 215

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.1 bits (189), Expect = 1e-14
 Identities = 53/312 (16%), Positives = 100/312 (32%), Gaps = 17/312 (5%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           + +S      S+  +  L +   + TL L  ++   S+           +H+ L +   +
Sbjct: 248 VHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAA 307

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSL 128
                      +++        E  +     +    +    ++L     ++S        
Sbjct: 308 SLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL--FRCELSVEKSTVLQ 365

Query: 129 TNLSSSLSYLHLTGCNLIGPI--PASLANLPQLTSLSLSYNHFSGHIPSFLSHL--KQLY 184
           + L S      L   N    +     +  L  L     +  +FS      L  +   +  
Sbjct: 366 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST-----LKAVDPMRAA 420

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT 244
           YL+  ++  +       +    +  L L+   LT  L   L+ L  +  L LS N L   
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-A 477

Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKN 304
           +P  L   L  LEV+   DN    ++   +  L  L  + L +N L     +        
Sbjct: 478 LPPAL-AALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534

Query: 305 LQYLYLSQNRLS 316
           L  L L  N L 
Sbjct: 535 LVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 4e-12
 Identities = 52/261 (19%), Positives = 82/261 (31%), Gaps = 24/261 (9%)

Query: 158 QLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQL 217
            L + SL+            +         L ++       DS     QL   +LS  + 
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS-ATDEQLFRCELSVEKS 361

Query: 218 TGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWL--FTVLPYLEVIHLRDNRFTGSIPSTIF 275
           T  L S L+  + L  L         TI   +     L Y +      +      P    
Sbjct: 362 T-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 276 ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGL 335
            L +L S  L  N++       +       + L+L+   L   T L        +  L L
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADV-------RVLHLAHKDL---TVLCHLEQLLLVTHLDL 470

Query: 336 SACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK-DTLYNLNLSDNFLTDVEQ 394
           S   +   P  L +   LE LQ S+N +   +      +     L  L L +N L     
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNALE-NVDG----VANLPRLQELLLCNNRLQQSAA 525

Query: 395 VP----LKNLRFLDLRSNLLQ 411
           +        L  L+L+ N L 
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 48/322 (14%), Positives = 94/322 (29%), Gaps = 34/322 (10%)

Query: 258 VIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV 317
            +        GS   T+  +V+   + +      G                   Q     
Sbjct: 258 SVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHT 317

Query: 318 NTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKD 377
              +   S      +  L       +     + ++L   +LS  K    + +      + 
Sbjct: 318 FRVIWTGSDS--QKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKEL 374

Query: 378 TLYNLNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIP 436
                      LT +  +  L  L +             V P R  +     +K   E  
Sbjct: 375 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENS 434

Query: 437 CSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNL 496
                 A +  + L++  L+                          +  +      + +L
Sbjct: 435 VLKMEYADVRVLHLAHKDLT-------------------------VLCHLEQLLL-VTHL 468

Query: 497 ILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIG 556
            L+ N+    LP +LA    L+VL  ++N +++     +A LP L  L+L +N+      
Sbjct: 469 DLSHNRLRA-LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQS-A 524

Query: 557 NTDARVIFPKLRILDLSRNEFT 578
                V  P+L +L+L  N   
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 5e-08
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 602 QVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNF 661
            V  M            L    V     +   V+  +       +   + +L L+  L+ 
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDL 470

Query: 662 SHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
           SHN L   +P +L  L  LE L  S N L   +   + +L  L +L L +N+L+
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 26/191 (13%)

Query: 223 SCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTS 282
               GL N V   L   S+   +       L  ++  +  ++    S+ + +    NL  
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKE 67

Query: 283 IRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISE 342
           + LS N +S   +L     L  L+ L +++NRL     +        L +L L    + +
Sbjct: 68  LHLSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLFLDNNELRD 120

Query: 343 FPDFLRSQDRLEWLQLSENKIYGRIPNWFWDI----GKDTLYNLNLSDNFLTDVEQV-PL 397
             D L     LE L +  NK+          I        L  L+L  N +T+   +  L
Sbjct: 121 T-DSLIHLKNLEILSIRNNKL--------KSIVMLGFLSKLEVLDLHGNEITNTGGLTRL 171

Query: 398 KNLRFLDLRSN 408
           K + ++DL   
Sbjct: 172 KKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 21/206 (10%)

Query: 111 ELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFS 170
           E +     ++ +  D  L N        +L   ++   +      L  + + +   ++  
Sbjct: 1   ESIQRPTPINQVFPDPGLANAVK----QNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ 54

Query: 171 GHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRN 230
             + + +     L  L+L  N +         +LT+L  L ++ N+L     + +     
Sbjct: 55  -SL-AGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSA-C 107

Query: 231 LVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNL 290
           L  L L  N L  T        L  LE++ +R+N+   SI   +  L  L  + L  N +
Sbjct: 108 LSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEI 162

Query: 291 SGHIELCMFARLKNLQYLYLSQNRLS 316
           +         RLK + ++ L+  +  
Sbjct: 163 T---NTGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 45/218 (20%), Positives = 76/218 (34%), Gaps = 22/218 (10%)

Query: 73  SEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLS 132
                L+  +  +L K     + S       + L+ ++       ++ ++      TN  
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS------QKELSGVQNFNGDNSNIQSLAGMQFFTN-- 64

Query: 133 SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNN 192
             L  LHL+  N I  +   L +L +L  LS++ N       + +     L  L L+ N 
Sbjct: 65  --LKELHLSH-NQISDLSP-LKDLTKLEELSVNRNRLK--NLNGIPSAC-LSRLFLDNNE 117

Query: 193 LVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTV 252
           L     DS ++L  L  L +  N+L       L  L  L  L L GN +  T      T 
Sbjct: 118 LRD--TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGG---LTR 170

Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNL 290
           L  +  I L   +          EL    +++      
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 41/218 (18%), Positives = 72/218 (33%), Gaps = 22/218 (10%)

Query: 24  SSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLS 83
                L      NLG               L  + + N  NS       + +   + +  
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDL---VSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKE 67

Query: 84  LDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGC 143
           L LS N    +        +++LTKL+EL ++   +  +     + +    LS L L   
Sbjct: 68  LHLSHNQISDLSP------LKDLTKLEELSVNRNRLKNLN---GIPSA--CLSRLFLDNN 116

Query: 144 NLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVN 203
            L       L +L  L  LS+  N     I   L  L +L  L+L  N +          
Sbjct: 117 ELRDTDS--LIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITN--TGGLTR 170

Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL 241
           L +++++DL+  +           L    T++      
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 28/199 (14%)

Query: 24  SSLFLLPYLETLNLGSNDFNSSLIS--SGFGRLISLTHLNLSNSYFSGQIPSEISQLSKM 81
           + +     L+ L+L  N      IS  S    L  L  L+++ +    ++   ++ +   
Sbjct: 57  AGMQFFTNLKELHLSHNQ-----ISDLSPLKDLTKLEELSVNRN----RL-KNLNGIPSA 106

Query: 82  --LSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLH 139
               L L  N+    +S      + +L  L+ L +    + +IV    L  LS  L  L 
Sbjct: 107 CLSRLFLDNNELRDTDS------LIHLKNLEILSIRNNKLKSIV---MLGFLSK-LEVLD 156

Query: 140 LTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPD 199
           L G N I      L  L ++  + L+          +   L     +       +   P 
Sbjct: 157 LHG-NEITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PY 212

Query: 200 SFVNLTQLSFLDLSWNQLT 218
              N        + W    
Sbjct: 213 YISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 15/158 (9%)

Query: 302 LKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSEN 361
           L N     L +  +   T L +      +        NI      ++    L+ L LS N
Sbjct: 18  LANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHN 73

Query: 362 KIYGRIPNWFWDIGKDT-LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLP-- 418
           +I   +      +   T L  L+++ N L ++  +P   L  L L +N L+     L   
Sbjct: 74  QI-SDLSP----LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR-DTDSLIHL 127

Query: 419 PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS 456
             L   SI NNKL   +   F +   +E +DL  N ++
Sbjct: 128 KNLEILSIRNNKLKSIVMLGFLSK--LEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 41/203 (20%)

Query: 379 LYNLNLSDNFLTDVE-QVPLKNLRFLDLRSNLLQG-SVMVLPPRLIFFSISNNKLTGEIP 436
               NL    +TD+  Q  L  ++  +  ++ +Q  + M     L    +S+N+++    
Sbjct: 21  AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS---- 76

Query: 437 CSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISA-NGSGLVN 495
                       DLS           L D   L  L ++ N     +  ++    + L  
Sbjct: 77  ------------DLSP----------LKDLTKLEELSVNRNR----LKNLNGIPSACLSR 110

Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
           L L++N+       SL +   L++L++ NN++       L  L +L VL L  N+    I
Sbjct: 111 LFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE----I 162

Query: 556 GNTDARVIFPKLRILDLSRNEFT 578
            NT       K+  +DL+  +  
Sbjct: 163 TNTGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 33/219 (15%), Positives = 67/219 (30%), Gaps = 36/219 (16%)

Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
            I          P      +     N+    + D       +L  +      ++     I
Sbjct: 2   SIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN----I 53

Query: 556 GNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSA 615
            +      F  L+ L LS N+ + + P +    L+ +    N                  
Sbjct: 54  QSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK--------------- 98

Query: 616 FFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLR 675
                  ++     +    +   +N       + +  L  L++L+  +N L       L 
Sbjct: 99  -------NLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKS--IVMLG 147

Query: 676 NLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714
            L+ LE LDL  N +       LT L  ++ ++L+  + 
Sbjct: 148 FLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 42/250 (16%), Positives = 80/250 (32%), Gaps = 58/250 (23%)

Query: 469 LIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID 528
            +  +L   S    + Q     SG+ N   +++  +      +   + L+ L++++N+I 
Sbjct: 21  AVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQIS 76

Query: 529 DTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQN 588
           D  P  L  L +L  L +  N+   L G          L  L L  NE           +
Sbjct: 77  DLSP--LKDLTKLEELSVNRNRLKNLNGIP-----SACLSRLFLDNNELRDTDS---LIH 126

Query: 589 LKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPE 648
           LK                            L+ + +  N L                   
Sbjct: 127 LK---------------------------NLEILSIRNNKLKSI---------------V 144

Query: 649 VVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLN 708
           ++G L+ L++L+   N +T      L  L  +  +DL+  + V +       L   + + 
Sbjct: 145 MLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

Query: 709 LSHNQLEGPI 718
               +   P 
Sbjct: 203 DPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 419 PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNS 478
              +  ++    +T  +     +   ++  +  N+++       +     L  L L  N 
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELSG--VQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQ 74

Query: 479 FNGSIPQIS--ANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLA 536
               I  +S   + + L  L +N N+ +       A    L  L + NN + DT    L 
Sbjct: 75  ----ISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDTDS--LI 125

Query: 537 QLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLK 590
            L  L +L +R+NK    + +        KL +LDL  NE T        + + 
Sbjct: 126 HLKNLEILSIRNNK----LKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVN 175

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 76.1 bits (187), Expect = 2e-14
 Identities = 51/366 (13%), Positives = 110/366 (30%), Gaps = 38/366 (10%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNL--------------GSNDFNSSLISSGFGRL 54
             +     +   P+ + +   P + ++ L              G   +    I +     
Sbjct: 46  RKVFIGNCYAVSPA-TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY 104

Query: 55  ISLTHLNLSNSYFSGQIPSEISQLSKML-SLDLSKNDEVRIESPVWKGLIENLTKLKELV 113
             L  + L     +      I++  K    L LS  +    +      +      LKEL 
Sbjct: 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG--LAAIAATCRNLKELD 162

Query: 114 LSEVDMSTIVLDY--SLTNLSSSLSYLHLTGCNLI---GPIPASLANLPQLTSLSLSYNH 168
           L E D+  +   +     +  +SL  L+++          +   +   P L SL L+   
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222

Query: 169 FSGHIPSFLSHLKQLYYLNLE------QNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLP 222
               + + L    QL  L         + ++  G+  +     +L  L   W+ +   LP
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282

Query: 223 SCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTS 282
           +       L TL LS  ++       L    P L+ + + D      +        +L  
Sbjct: 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342

Query: 283 IRLSSNNLSGHIE---------LCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKL 333
           +R+  +                + +      L+ +     +++    +      P + + 
Sbjct: 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402

Query: 334 GLSACN 339
            L    
Sbjct: 403 RLCIIE 408

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 73/537 (13%), Positives = 145/537 (27%), Gaps = 90/537 (16%)

Query: 35  LNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRI 94
             +   +  +   ++   R   +  + L                      +L  +     
Sbjct: 46  RKVFIGNCYAVSPATVIRRFPKVRSVELKGK-------------PHFADFNLVPDGWGGY 92

Query: 95  ESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLS---SSLSYLHLTGCNLIGP--I 149
             P  + +  + T L+E+ L       +V D  L  ++    +   L L+ C       +
Sbjct: 93  VYPWIEAMSSSYTWLEEIRLK----RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL 148

Query: 150 PASLANLPQLTSLSLSYNHFSG----HIPSFLSHLKQLYYLNLEQNNLVGGIPDSFV--- 202
            A  A    L  L L  +         +  F      L  LN+  + L   +  S +   
Sbjct: 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI--SCLASEVSFSALERL 206

Query: 203 --NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
                 L  L L+      +L + L+    L  L   G +       +    +       
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266

Query: 261 LRDNRFTGSIPSTIFELV-----NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           LR               V      LT++ LS   +  +  + +  +   LQ L++  + +
Sbjct: 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL-DYI 325

Query: 316 SVNTKLDANSTFPKLLKLGLSACNISEFPDFLR-SQDRLEWLQLSENKIYGRIPNWFWDI 374
                    ST   L +L +           +  ++  L  + +   K+   +  +   +
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE-SVLYFCRQM 384

Query: 375 GKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGE 434
               L  +  +   +T      ++      L    L      +                 
Sbjct: 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI----------------- 427

Query: 435 IPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLV 494
                C        DL   SLSG     L D                    I      + 
Sbjct: 428 --VEHCK-------DLRRLSLSG----LLTDK---------------VFEYIGTYAKKME 459

Query: 495 NLILNDNQF--EGPLPQSLANCSRLQVLNVANNRI-DDTFPHWLAQLPELLVLILRS 548
            L +        G +   L+ C  L+ L + +    D       ++L  +  L + S
Sbjct: 460 MLSVAFAGDSDLG-MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 72/489 (14%), Positives = 142/489 (29%), Gaps = 78/489 (15%)

Query: 133 SSLSYLHLTGCNLIGPIPASLA-NLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQN 191
                  +   N     PA++    P++ S+ L         P F               
Sbjct: 41  ERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK------PHFADFNLVPDGWGGYVY 94

Query: 192 NLVGGIPDSFVNLTQLSFLDLSWNQLTGR-LPSCLKGLRNLVTLRLSG-NSLNGTIPSWL 249
             +  +  S+  L ++    L    +T   L    K  +N   L LS     +    + +
Sbjct: 95  PWIEAMSSSYTWLEEI---RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151

Query: 250 FTVLPYLEVIHLRDNRFTGSIPSTIFELV----NLTSIRLS--SNNLSGHIELCMFARLK 303
                 L+ + LR++         +        +L S+ +S  ++ +S      +  R  
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211

Query: 304 NLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKI 363
           NL+ L L++               P+L +LG         PD                  
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRA-PQLEELGTGGYTAEVRPDVYSG-----LSVALSGCK 265

Query: 364 YGRIPNWFWDIGKDTLY----------NLNLSDNFLTDVEQVPL----KNLRFLDLRSNL 409
             R  + FWD     L            LNLS   +   + V L      L+ L +   +
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

Query: 410 LQGSVMVLP---PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDS 466
               + VL      L    +  ++     P    T   +  + +    L           
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE---------- 375

Query: 467 ITLIWLDLHLNSF-NGSIPQISANGSGLVNLILNDNQFEGPLPQS-----------LANC 514
                +        N ++  I+ N   +    L   + + P   +           + +C
Sbjct: 376 ----SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431

Query: 515 SRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIF-----PKLRI 569
             L+ L+++    D  F +      ++ +L +         G++D  +         LR 
Sbjct: 432 KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSV------AFAGDSDLGMHHVLSGCDSLRK 485

Query: 570 LDLSRNEFT 578
           L++    F 
Sbjct: 486 LEIRDCPFG 494

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 25/243 (10%)

Query: 480 NGSIPQISANGSGLVNLILN--DNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQ 537
           +  +  I+ +      L+L+  +      L    A C  L+ L++  + +DD   HWL+ 
Sbjct: 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178

Query: 538 LPELLVLILRSNKFYGLIGNTDARVIF------PKLRILDLSRNEFTGVLPT--RYFQNL 589
            P+     L S     L        +       P L+ L L+R      L T  +    L
Sbjct: 179 FPDTYTS-LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQL 237

Query: 590 KAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEV 649
           + +  G  T+ V+           S    L+        LS F     +       +P V
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELR-------CLSGFWDAVPAY------LPAV 284

Query: 650 VGKLNLLKMLNFSHNHLTGR-IPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLN 708
               + L  LN S+  +    +   L     L+ L +        +    ++   L +L 
Sbjct: 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR 344

Query: 709 LSH 711
           +  
Sbjct: 345 VFP 347

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 64/334 (19%), Positives = 114/334 (34%), Gaps = 68/334 (20%)

Query: 56  SLTHLNLSNSYFSGQ----IPSEISQLSKMLSLDLSKNDEVRIESPVWKGL---IENLTK 108
           S+   +L     + +    + + + +   +  + LS N    I +   + L   I +   
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN---TIGTEAARWLSENIASKKD 61

Query: 109 LKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNH 168
           L+    S+               +  +         L+     +L   P+L ++ LS N 
Sbjct: 62  LEIAEFSD-------------IFTGRVKDEIPEALRLLL---QALLKCPKLHTVRLSDNA 105

Query: 169 FSG----HIPSFLSHLKQLYYLNLEQNNL-------------VGGIPDSFVNLTQLSFLD 211
           F       +  FLS    L +L L  N L                +     N   L  + 
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165

Query: 212 LSWNQLTGR----LPSCLKGLRNLVTLRLSGNSLN----GTIPSWLFTVLPYLEVIHLRD 263
              N+L            +  R L T+++  N +       +          L+V+ L+D
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 264 NRFTG----SIPSTIFELVNLTSIRLSSNNLS--GHIELC-MFARLKN--LQYLYLSQNR 314
           N FT     ++   +    NL  + L+   LS  G   +   F++L+N  LQ L L  N 
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 315 LSVN------TKLDANSTFPKLLKLGLSACNISE 342
           + ++      T +D     P LL L L+    SE
Sbjct: 286 IELDAVRTLKTVIDEK--MPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 45/278 (16%), Positives = 83/278 (29%), Gaps = 61/278 (21%)

Query: 30  PYLETLNLGSNDFNS---------SLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSK 80
             LE                     L+     +   L  + LS++ F    P+    L  
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PTAQEPLID 116

Query: 81  ML-------SLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSS 133
            L        L L  N    +       +   L +L     ++               + 
Sbjct: 117 FLSKHTPLEHLYLHNNG---LGPQAGAKIARALQELAVNKKAKN--------------AP 159

Query: 134 SLSYLHLTGCNLIGPIPAS-----LANLPQLTSLSLSYNHF-----SGHIPSFLSHLKQL 183
            L  +   G N +             +   L ++ +  N          +   L++ ++L
Sbjct: 160 PLRSIIC-GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 184 YYLNLEQNNL----VGGIPDSFVNLTQLSFLDLSWNQLTGR----LPSCLKGLRN--LVT 233
             L+L+ N         +  +  +   L  L L+   L+ R    +      L N  L T
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278

Query: 234 LRLSGNSLNG----TIPSWLFTVLPYLEVIHLRDNRFT 267
           LRL  N +      T+ + +   +P L  + L  NRF+
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 64/357 (17%), Positives = 109/357 (30%), Gaps = 80/357 (22%)

Query: 256 LEVIHLRDNRFTG----SIPSTIFELVNLTSIRLSSNNLS--GHIELC-MFARLKNLQYL 308
           +E   L+ +  T     S+ + + E  ++  I LS N +       L    A  K+L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 309 YLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP 368
             S                P+ L+L L A         L    +L  ++LS+N       
Sbjct: 66  EFSDIFTG-----RVKDEIPEALRLLLQA---------LLKCPKLHTVRLSDNAFG---- 107

Query: 369 NWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQ-GSVMVLPPRLIFFSIS 427
                  ++ L +  LS +            L  L L +N L   +   +   L   +++
Sbjct: 108 ----PTAQEPLIDF-LSKH----------TPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 428 NNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP----IPECLVDSITLIWLDLHLNSFN--G 481
                           P+  I    N L         +       L  + +  N     G
Sbjct: 153 KKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203

Query: 482 SIPQIS---ANGSGLVNLILNDNQF--EG--PLPQSLANCSRLQVLNVANNRIDDTFPHW 534
               +    A    L  L L DN F   G   L  +L +   L+ L + +  +       
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263

Query: 535 LAQL------PELLVLILRSNKFYGLIGNTDARVI-------FPKLRILDLSRNEFT 578
           +           L  L L+ N+    I     R +        P L  L+L+ N F+
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNE----IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 56/309 (18%), Positives = 90/309 (29%), Gaps = 76/309 (24%)

Query: 323 ANSTFPKLLKLGLSACNISE-----FPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIG-- 375
           A  +   +    L    I+          L   D ++ + LS N I G            
Sbjct: 2   ARFS---IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-G-------TEAAR 50

Query: 376 --------KDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSIS 427
                   K  L     SD F   V+    + LR L           ++  P+L    +S
Sbjct: 51  WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL--------LQALLKCPKLHTVRLS 102

Query: 428 NNKLTGEIPCSFCTA----APIEFIDLSNNSLS-------------GPIPECLVDSITLI 470
           +N                  P+E + L NN L                + +   ++  L 
Sbjct: 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162

Query: 471 WLDLHLNSF-NGSIPQIS---ANGSGLVNLILNDNQF-----EGPLPQSLANCSRLQVLN 521
            +    N   NGS+ + +    +   L  + +  N       E  L + LA C  L+VL+
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222

Query: 522 VANNRIDDT----FPHWLAQLPELLVLILRSNKFYGLIGNTDARVI--------FPKLRI 569
           + +N             L   P L  L L        +    A  +           L+ 
Sbjct: 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCL----LSARGAAAVVDAFSKLENIGLQT 278

Query: 570 LDLSRNEFT 578
           L L  NE  
Sbjct: 279 LRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 61/374 (16%), Positives = 107/374 (28%), Gaps = 105/374 (28%)

Query: 204 LTQLSF--LDLSWNQLTGR----LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVL---P 254
           + + S     L  + +T      + + L    ++  + LSGN++      WL   +    
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 255 YLEVIHLRDNRFTGSIPSTIFELV-----------NLTSIRLSSNNLS--GHIELC-MFA 300
            LE+    D  FTG +   I E +            L ++RLS N         L    +
Sbjct: 61  DLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 301 RLKNLQYLYLSQNR------------LSVNTKLDANSTFPKLLKLGLSACNISE-----F 343
           +   L++LYL  N             L            P L  +      +       +
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 344 PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFL 403
               +S   L  +++ +N I           G + L    L+            + L+ L
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIR--------PEGIEHLLLEGLAYC----------QELKVL 221

Query: 404 DLRSNLLQ-------GSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS 456
           DL+ N             +   P L    +++  L+     +   A        S     
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA-------FSKLE-- 272

Query: 457 GPIPECLVDSITLIWLDLHLNSFNGSIPQISANG-SGLVNLILNDNQFEGPLPQSLANCS 515
                    +I L  L L  N       +I  +    L  +I                  
Sbjct: 273 ---------NIGLQTLRLQYN-------EIELDAVRTLKTVIDE-------------KMP 303

Query: 516 RLQVLNVANNRIDD 529
            L  L +  NR  +
Sbjct: 304 DLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 50/324 (15%), Positives = 91/324 (28%), Gaps = 96/324 (29%)

Query: 445 IEFIDLSNNSLSGP----IPECLVDSITLIWLDLHLNSFNGSIPQISA----------NG 490
           ++ I LS N++       + E +     L   +           +I              
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 491 SGLVNLILNDNQF--EG--PLPQSLANCSRLQVLNVANNRIDD-------------TFPH 533
             L  + L+DN F      PL   L+  + L+ L + NN +                   
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 534 WLAQLPELLVLILRSNKFYGLIGNTDARVI------FPKLRILDLSRNEFT--GVLPTRY 585
                P L  +I   N+    + N   +           L  + + +N     G+     
Sbjct: 154 KAKNAPPLRSIICGRNR----LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI----- 204

Query: 586 FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRF--E 643
            ++L                             LK             V+D   N F   
Sbjct: 205 -EHLLLEGLAYCQ-------------------ELK-------------VLDLQDNTFTHL 231

Query: 644 G--QIPEVVGKLNLLKMLNFSHNHLTGR----IPSSLRNL--TVLESLDLSSNRL----V 691
           G   +   +     L+ L  +   L+ R    +  +   L    L++L L  N +    V
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291

Query: 692 GQIPTQL-TSLNFLSKLNLSHNQL 714
             + T +   +  L  L L+ N+ 
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 25/173 (14%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNS---SLISSGFGRLISLTHLNLSNSYFSGQ----- 70
            +  N      P L ++  G N   +      +  F     L  + +  +    +     
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 71  IPSEISQLSKMLSLDLSKNDEVRIESPVWKGL---IENLTKLKELVLSEVDMST---IVL 124
           +   ++   ++  LDL  N            L   +++   L+EL L++  +S      +
Sbjct: 208 LLEGLAYCQELKVLDLQDN---TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 125 DYSLTNLS-SSLSYLHLTGCNLIGP-----IPASLA-NLPQLTSLSLSYNHFS 170
             + + L    L  L L     I       +   +   +P L  L L+ N FS
Sbjct: 265 VDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 67.4 bits (165), Expect = 8e-13
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 4/130 (3%)

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT 244
           YL+LE N+L       F  LT L+ L L  N+L          L +L  L LS N L  +
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-S 90

Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLK 303
           +P+ +F  L  L+ + L  N+   S+P  +F+ L  L  +RL  N L   +   +F RL 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLT 148

Query: 304 NLQYLYLSQN 313
           +LQY++L  N
Sbjct: 149 SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 4/137 (2%)

Query: 154 ANLPQLT-SLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL 212
             +P  T  L L  N            L  L  L L  N L       F  LT L++L+L
Sbjct: 24  TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83

Query: 213 SWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPS 272
           S NQL          L  L  L L+ N L  ++P  +F  L  L+ + L  N+   S+P 
Sbjct: 84  STNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141

Query: 273 TIFE-LVNLTSIRLSSN 288
            +F+ L +L  I L  N
Sbjct: 142 GVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 48/153 (31%), Positives = 60/153 (39%), Gaps = 9/153 (5%)

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS 175
            V+  +       T + +  +YL L   +L          L  LT L L  N        
Sbjct: 11  TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKG----LRNL 231
             + L  L YLNL  N L       F  LTQL  L L+ NQL   LP    G    L  L
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLP---DGVFDKLTQL 126

Query: 232 VTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN 264
             LRL  N L  ++P  +F  L  L+ I L DN
Sbjct: 127 KDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 67.8 bits (166), Expect = 8e-13
 Identities = 41/129 (31%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT 244
            L L  N +    P  F +L  L  L L  NQL          L  L  L L  N L   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-V 102

Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKN 304
           +PS +F  L +L+ + +  N+ T  +P  I  L +LT + L  N L   I    F RL +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSS 160

Query: 305 LQYLYLSQN 313
           L + YL  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 39/149 (26%), Positives = 54/149 (36%), Gaps = 2/149 (1%)

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS 175
            VD  +         + ++   L+L    +    P    +L  L  L L  N        
Sbjct: 23  TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLR 235
               L QL  L+L  N L       F  L  L  L +  N+LT  LP  ++ L +L  L 
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141

Query: 236 LSGNSLNGTIPSWLFTVLPYLEVIHLRDN 264
           L  N L  +IP   F  L  L   +L  N
Sbjct: 142 LDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 33/156 (21%)

Query: 257 EVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
           ++++L DN+ T  +   +F+ L+NL  + L SN L   + + +F  L  L  L L  N+L
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQL 100

Query: 316 SVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIG 375
              T L +   F +L+                     L+ L +  NK+   +P     + 
Sbjct: 101 ---TVLPSA-VFDRLVH--------------------LKELFMCCNKL-TELPRGIERLT 135

Query: 376 KDTLYNLNLSDNFLTDVEQV---PLKNLRFLDLRSN 408
              L +L L  N L  +       L +L    L  N
Sbjct: 136 H--LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 38/132 (28%), Positives = 50/132 (37%), Gaps = 21/132 (15%)

Query: 354 EWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ-VP--LKNLRFLDLRSNLL 410
           + L L +N+I    P  F  +    L  L L  N L  +   V   L  L  LDL +N L
Sbjct: 43  QILYLHDNQITKLEPGVFDSLIN--LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100

Query: 411 QGSVMVLPPR-------LIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECL 463
                VLP         L    +  NKLT E+P        +  + L  N L   IP   
Sbjct: 101 T----VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGA 154

Query: 464 VD---SITLIWL 472
            D   S+T  +L
Sbjct: 155 FDRLSSLTHAYL 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 17/150 (11%)

Query: 71  IPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTI---VLDYS 127
           +P+ I   ++   L L  N   ++E  V+  L      LKEL L    +  +   V D S
Sbjct: 34  VPAGIPTNAQ--ILYLHDNQITKLEPGVFDSL----INLKELYLGSNQLGALPVGVFD-S 86

Query: 128 LTNLSSSLSYLHLTGCNLIGPIPASL-ANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYL 186
           LT L+     L L G N +  +P+++   L  L  L +  N  +  +P  +  L  L +L
Sbjct: 87  LTQLT----VLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHL 140

Query: 187 NLEQNNLVGGIPDSFVNLTQLSFLDLSWNQ 216
            L+QN L      +F  L+ L+   L  N 
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 160 TSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG 219
           T L L  N F+  +P  LS+ K L  ++L  N +      SF N+TQL  L LS+N+L  
Sbjct: 34  TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 220 RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN 264
             P    GL++L  L L GN ++  +P   F  L  L  + +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 257 EVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
             ++L  N+FT  +P  +    +LT I LS+N +S  +    F+ +  L  L LS NRL 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 645 QIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPT----QLTS 700
            +P+ +     L +++ S+N ++     S  N+T L +L LS NRL   IP      L S
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKS 103

Query: 701 LNFLSKLNLSHNQLEGPIPQG 721
           L  LS   L  N +   +P+G
Sbjct: 104 LRLLS---LHGNDISV-VPEG 120

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.7 bits (165), Expect = 9e-12
 Identities = 74/548 (13%), Positives = 158/548 (28%), Gaps = 91/548 (16%)

Query: 51  FGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLK 110
             R  +L  L L                 +    +L   +     +P    +  NL +LK
Sbjct: 69  SRRFPNLRSLKLKGK-------------PRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115

Query: 111 ELVLSEVDMSTIVLDYSLTNLS----SSLSYLHLTGCNLIGP--IPASLANLPQLTSLSL 164
            +         IV D  L  L+      L  L L  C+      + + + +  ++ +L +
Sbjct: 116 SVHFR----RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171

Query: 165 SYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGR-LPS 223
             + FS     +L  L                      +L  L+F    + +++ + L +
Sbjct: 172 EESSFSEKDGKWLHEL-----------------AQHNTSLEVLNFYMTEFAKISPKDLET 214

Query: 224 CLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSI 283
             +  R+LV++++        +    F     LE            +P     LV    +
Sbjct: 215 IARNCRSLVSVKVGDFE-ILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272

Query: 284 RLSSNNLSGHIEL-CMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSAC-NIS 341
                +  G  E+  +F     ++ L L    L            P L  L         
Sbjct: 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDR 332

Query: 342 EFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLR 401
                 +   +L+ L++        + +    + +  L  L               + L 
Sbjct: 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-----------CQELE 381

Query: 402 FLDLR-SNLLQGSVMVL---PPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSG 457
           ++ +  S++   S+  +      L  F +                       +++  L  
Sbjct: 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVL--------LDREE-------RITDLPLDN 426

Query: 458 PIPECLVDSITLIWLDLHLNSFN---GSIPQISANGSGLVNLILNDNQF--EGPLPQSLA 512
            +   L+    L     +L         +  I      +  ++L       EG L +   
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG-LMEFSR 485

Query: 513 NCSRLQVLNVANNRI-DDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVI-----FPK 566
            C  LQ L +      +      + +LP L  L ++  +       T   ++     +  
Sbjct: 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR----ASMTGQDLMQMARPYWN 541

Query: 567 LRILDLSR 574
           + ++   R
Sbjct: 542 IELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.7 bits (165), Expect = 9e-12
 Identities = 64/394 (16%), Positives = 118/394 (29%), Gaps = 49/394 (12%)

Query: 9   LDLSCSWLHGSIPSNSSLFLL-----PYLETLNLGS-NDFNSSLISSGFGRLISLTHLNL 62
           +      +     S+  L  L       LETL L   + F +  + S       +  L +
Sbjct: 117 VHFRRMIV-----SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171

Query: 63  SNSYF---SGQIPSEISQLSKML-SLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVD 118
             S F    G+   E++Q +  L  L+    +  +I     + +  N   L  + + + +
Sbjct: 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231

Query: 119 MSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLS 178
           +  +V  +             L     +     +L    +L  L LSY   +  +P    
Sbjct: 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFP 290

Query: 179 HLKQLYYLNLEQNNLVG-GIPDSFVNLTQLSFLDLSWNQLTGR-LPSCLKGLRNLVTLRL 236
              Q+  L+L    L              L  L+   N +  R L    +  + L  LR+
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI 349

Query: 237 SGNSLNGTIPSWLFTV-----------LPYLEVIHLRDNRFT-GSIPSTIFELVNLTSIR 284
              +    +      V              LE + +  +  T  S+ S    L NL   R
Sbjct: 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409

Query: 285 LSSNNLSGHIELC--------MFARLKNLQYLYLSQNRLSVNTKLDAN-----STFPKLL 331
           L   +    I           +    K L+       +  +    D          P + 
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT---DLGLSYIGQYSPNVR 466

Query: 332 KLGLSACNISE--FPDFLRSQDRLEWLQLSENKI 363
            + L     S+    +F R    L+ L++     
Sbjct: 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 61/469 (13%), Positives = 144/469 (30%), Gaps = 61/469 (13%)

Query: 279 NLTSIRLSSNNLSGHIELCMFA---RLKNLQYLYLSQNRLSVNT-KLDANSTFPKLLKLG 334
                 L   N  G++   +      L+ L+ ++  +  +S       A +    L  L 
Sbjct: 85  RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144

Query: 335 LSAC-NISE--FPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKD--TLYNLNLSDNFL 389
           L  C   +       +    +++ L + E+    +   W  ++ +   +L  LN     +
Sbjct: 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY---M 201

Query: 390 TDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAP-IEFI 448
           T+  ++  K+L  +                 L+   + + ++   +   F  AA  +E  
Sbjct: 202 TEFAKISPKDLETIARNC-----------RSLVSVKVGDFEILELV--GFFKAAANLEEF 248

Query: 449 DLSNNSLSGPIPECLVDSITLIWLDLHLNSF--NGSIPQISANGSGLVNLILNDNQFEGP 506
              + +    +PE  ++ +    L     S+     +P +    + +  L L     E  
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 507 -LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARV--- 562
                +  C  L+VL   N   D           +L  L +        + + +  V   
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368

Query: 563 -------IFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRG-SNTSTVQVQYMHRFGRYYS 614
                     +L  + +  ++ T        ++L+++     N    ++  + R  R   
Sbjct: 369 GLIALAQGCQELEYMAVYVSDITN-------ESLESIGTYLKNLCDFRLVLLDREER--- 418

Query: 615 AFFTLKGIDVEMNILSI------FLVIDFSSNRFEGQIPEVVGKL-NLLKMLNFSHNHLT 667
              T   +D  +  L I                        +G+    ++ +   +   +
Sbjct: 419 --ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476

Query: 668 GR-IPSSLRNLTVLESLDLSSNRLVGQ-IPTQLTSLNFLSKLNLSHNQL 714
              +    R    L+ L++       + I   +T L  L  L +   + 
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 43/240 (17%), Positives = 93/240 (38%), Gaps = 17/240 (7%)

Query: 1   MVTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHL 60
           +++  VI      S++   +  + S F +   + ++L ++    S +     +   L +L
Sbjct: 67  LLSQGVIAFRCPRSFMDQPLAEHFSPFRV---QHMDLSNSVIEVSTLHGILSQCSKLQNL 123

Query: 61  NLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSE-VDM 119
           +L     S  I + +++ S ++ L+LS        +   + L+ + ++L EL LS   D 
Sbjct: 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA--LQTLLSSCSRLDELNLSWCFDF 181

Query: 120 STIVLDYSLTNLSSSLSYLHLTGCNLI---GPIPASLANLPQLTSLSLSY-NHFSGHIPS 175
           +   +  ++ ++S +++ L+L+G         +   +   P L  L LS           
Sbjct: 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPD----SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNL 231
               L  L +L+L +      I          +  L  L +      G L    + L +L
Sbjct: 242 EFFQLNYLQHLSLSRCY---DIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 298

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 50/272 (18%), Positives = 87/272 (31%), Gaps = 29/272 (10%)

Query: 45  SLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIE 104
           S +   + RL S   L  +       +  +++       +   +     ++ P+ +    
Sbjct: 33  SGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-- 90

Query: 105 NLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSL 164
           +  +++ + LS   +    L   L+  S  L  L L G  L  PI  +LA    L  L+L
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSK-LQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149

Query: 165 SYNHF--SGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLP 222
           S         + + LS   +L  LNL              + T+                
Sbjct: 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCF----------DFTEKHVQVA---------- 189

Query: 223 SCLKGLRNLVTLRLSG--NSLNGTIPSWLFTVLPYLEVIHLRDNRF-TGSIPSTIFELVN 279
                   +  L LSG   +L  +  S L    P L  + L D+           F+L  
Sbjct: 190 -VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248

Query: 280 LTSIRLSSNNLSGHIELCMFARLKNLQYLYLS 311
           L  + LS         L     +  L+ L + 
Sbjct: 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.9 bits (160), Expect = 1e-11
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPS-CLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
                     L+ L +   Q    L    L+GL  L  L +  + L   +    F   P 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNL 290
           L  ++L  N    S+     + ++L  + LS N L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 1e-10
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSF-LSHLKQLYYLNLEQNNLVGGIPDSFVNLTQL 207
               L     LT L +       H+    L  L +L  L + ++ L    PD+F    +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 208 SFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
           S L+LS+N L       ++GL +L  L LSGN L+
Sbjct: 83  SRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 173 IPSFLSHLKQLYYLNLEQNNLVGGIPD-SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNL 231
               L   + L  L +E    +  +       L +L  L +  + L    P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 232 VTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267
             L LS N+L  ++       L  L+ + L  N   
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.8 bits (139), Expect = 5e-09
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDA 323
                     +    NLT + + +     H+EL     L  L+ L + ++ L      DA
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DA 75

Query: 324 NSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSEN 361
               P+L +L LS   +            L+ L LS N
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 635 IDFSSNRFEGQIP-EVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
           +   + +    +    +  L  L+ L    + L    P +      L  L+LS N L   
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95

Query: 694 IPTQLTSLNFLSKLNLSHNQL 714
               +  L+ L +L LS N L
Sbjct: 96  SWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 669 RIPSSLRNLTVLESLDLSSNRLVGQIPTQ-LTSLNFLSKLNLSHNQLE 715
                L     L  L + + + +  +  + L  L  L  L +  + L 
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 55/319 (17%), Positives = 96/319 (30%), Gaps = 56/319 (17%)

Query: 100 KGLIENLTKLKELVLSEVD-MSTIVLDYSLTNLS------SSLSYLHLTGCNLIGPIPAS 152
           + + + L KL   VL   + +  +   Y   N        SSL  L+L G   + P+  +
Sbjct: 32  QAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVR-MTPVKCT 90

Query: 153 ------LANLPQLTSLSLSYNHFSGH-IPSFLSHLKQLYYLNLEQNNL----VGGIPDSF 201
                  +    L  ++L+        + + L    +   L L+ N+L       + D  
Sbjct: 91  VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150

Query: 202 -VNLTQLSFLDLSWNQLTGR----LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVL--- 253
             +  Q++ L LS N LT      L   L G  ++  L L    L       L   L   
Sbjct: 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210

Query: 254 PYLEVIHLRDNRFTGS----IPSTIFELVNLTSIRLSSNNLS--GHIELC-MFARLKNLQ 306
             L+ +++  N    +    +     E  +L  + L  N LS  G   L  +    +   
Sbjct: 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGA 270

Query: 307 YLYLSQNR---------------LSVNTKLDANSTF--PKLLKLGLSACNISEFP----- 344
            + +S                         D        +LL   L     +        
Sbjct: 271 RVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKA 330

Query: 345 DFLRSQDRLEWLQLSENKI 363
             LR +  +  L       
Sbjct: 331 QLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 54/284 (19%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKML--------SLDLSKNDEVRIESPVWKGLIENLT 107
           SL  LNL+    +   P + + ++ +L         ++L+     +++    + L+    
Sbjct: 73  SLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASC---QLDPAGLRTLLPVFL 126

Query: 108 KLKELVLSEV---DMSTIVLDYSLTNLSSSLSYLHLTGCNL----IGPIPASLANLPQLT 160
           + ++L L        +   L   L +    ++ L L+   L    +  +   LA    +T
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 161 SLSLSYNHFS----GHIPSFLSHLKQLYYLNLEQNNL----VGGIPDSFVNLTQLSFLDL 212
            LSL +          + + L   +QL  LN+  N         +  +      L  L L
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246

Query: 213 SWNQLT-------GRLPSCLKGLRNLVTLRLSGNSL--------------NGTIPSWLFT 251
            +N+L+         L    +G   +V     G ++                +       
Sbjct: 247 YFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQ 306

Query: 252 VLPYLEVIHLRDNRFTGSIPSTIFEL--VN--LTSIRLSSNNLS 291
               L +  L D+R     P    +L  V   + ++     +  
Sbjct: 307 RHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 38/270 (14%), Positives = 73/270 (27%), Gaps = 71/270 (26%)

Query: 347 LRSQDRLEWLQLSENKIYGRIPNWFWDIG-----------KDTLYNLNLSDNFLTDVEQV 395
                 L  L L+  ++          +            +  L  +NL+   L      
Sbjct: 68  AEVLSSLRQLNLAGVRMT--------PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR 119

Query: 396 PL----KNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLS 451
            L       R L L+ N L         + +   + +++              I  + LS
Sbjct: 120 TLLPVFLRARKLGLQLNSLGPEAC----KDLRDLLLHDQCQ------------ITTLRLS 163

Query: 452 NNSLSGP----IPECLVDSITLIWLDLHLNSFNGSIPQISANG-----------SGLVNL 496
           NN L+      + E L  + ++  L L           +   G             L  L
Sbjct: 164 NNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-------GLGDEGLELLAAQLDRNRQLQEL 216

Query: 497 ILNDNQFEGP----LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL------LVLIL 546
            +  N         L ++      L++L++  N +       L  L         +V+ L
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL 276

Query: 547 RSNKFYGLIGNTDARVIFPKLRILDLSRNE 576
                     +     +   L   D +R +
Sbjct: 277 TEGTAVSEYWSVILSEVQRNLNSWDRARVQ 306

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 59/332 (17%), Positives = 115/332 (34%), Gaps = 54/332 (16%)

Query: 83  SLDLSKNDEVRIESPVWKGLIENL----TKLKELVLSEVDMSTI---VLDYSLTNLSSSL 135
           SLDLS N+   + S     LI+        +  L LS   +       L   L  + +++
Sbjct: 26  SLDLSLNN---LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 136 SYLHLTGCNL----IGPIPASLANLP-QLTSLSLSYNHFSG----HIPSFLSHL-KQLYY 185
           + L+L+G  L       +  +LA +P  +T L L +N FS           S+L   +  
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 186 LNLEQNNL----VGGIPDSFVNL-TQLSFLDLSWNQLTGR----LPSCLKGL-RNLVTLR 235
           LNL  N+L       +      +   ++ L+L  N L  +    L   L  +  ++ +L 
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD 202

Query: 236 LSGNSLNGT----IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELV----NLTSIRLSS 287
           LS N L       +     ++  ++  ++L  N   G     +  L     +L ++ L  
Sbjct: 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262

Query: 288 NNLS-----GHIELC-MFARLKNLQYLYLSQNRLSVN-TKLDANS---TFPKLLKLGLSA 337
           + +          L   F  ++ +  +  +   +  + +   +N       K     L  
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN 322

Query: 338 CNISE------FPDFLRSQDRLEWLQLSENKI 363
             +          + L   D L     +   +
Sbjct: 323 QCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 57/318 (17%), Positives = 106/318 (33%), Gaps = 55/318 (17%)

Query: 45  SLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKML--------SLDLSKNDEVRIES 96
           + +         +T L+LS +           +L +          SL+LS N    +  
Sbjct: 12  NPVEEFTSIPHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNS---LGF 65

Query: 97  PVWKGLIENL----TKLKELVLSE---VDMSTIVLDYSLTNLSSSLSYLHLTGCNL---- 145
                L++ L      +  L LS       S+  L  +L  +  +++ L L   +     
Sbjct: 66  KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125

Query: 146 IGPIPASLANLPQ-LTSLSLSYNHFSG----HIPSFLSHL-KQLYYLNLEQNNL----VG 195
                 + +NLP  +TSL+L  N         +   L+ +   +  LNL  NNL      
Sbjct: 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA 185

Query: 196 GIPDSFVNL-TQLSFLDLSWNQLTGR----LPSCLKGL-RNLVTLRLSGNSLNGTIPSWL 249
            +     ++   ++ LDLS N L  +    L      +  ++V+L L  N L+G     L
Sbjct: 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245

Query: 250 ---FTVLPYLEVIHLRDNRFTGSIPSTIFELV-------NLTSIRLSSNNL--SGHIELC 297
                 L +L+ ++L  +            L         +  +  +   +  S  I + 
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305

Query: 298 MFARLKN--LQYLYLSQN 313
              R  +       L   
Sbjct: 306 NLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 56/313 (17%), Positives = 108/313 (34%), Gaps = 57/313 (18%)

Query: 31  YLETLNLGSNDFNSS---LISSGFGRL-ISLTHLNLSNSYFSGQIPSEISQLSKML---- 82
            + +LNL  N         +      +  ++T LNLS ++ S        +L K L    
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS---YKSSDELVKTLAAIP 108

Query: 83  ----SLDLSKNDEVRIESPVWKGLIENL----TKLKELVLSE---VDMSTIVLDYSLTNL 131
                LDL  ND     S       +        +  L L        S+  L   L  +
Sbjct: 109 FTITVLDLGWND---FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165

Query: 132 SSSLSYLHLTGCNLIGP-----IPASLANLPQ-LTSLSLSYNHFS----GHIPSFLSHLK 181
            ++++ L+L   N +       +   LA++P  +TSL LS N         +    S + 
Sbjct: 166 PANVNSLNL-RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 182 -QLYYLNLEQNNL----VGGIPDSFVNLTQLSFLDLSWNQLTG-------RLPSCLKGLR 229
             +  LNL  N L    +  +     +L  L  + L ++ +          L +    ++
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 230 NLVTLRLSGNSLNGT----IPSWLFTVLPYLEVIHLRDN--RFTGSIPSTIFELVNLTSI 283
            ++ +  +G  ++ +    I + +  +    +V  L +    F     + I +L     +
Sbjct: 285 KIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

Query: 284 R---LSSNNLSGH 293
           R    +   L  H
Sbjct: 345 RESIQTCKPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 46/295 (15%), Positives = 90/295 (30%), Gaps = 49/295 (16%)

Query: 141 TGCNLIGPIPASLANLPQLTSLSLSYNHFSG----HIPSFLSHLK-QLYYLNLEQNNL-- 193
            G N +       +    +TSL LS N+        +    ++    +  LNL  N+L  
Sbjct: 9   PGSNPVE---EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF 65

Query: 194 --VGGIPDSF-VNLTQLSFLDLSWNQLTGR----LPSCLKGL-RNLVTLRLSGNSLNGT- 244
                +          ++ L+LS N L+ +    L   L  +   +  L L  N  +   
Sbjct: 66  KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125

Query: 245 ---IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFEL-----VNLTSIRLSSNNLS--GHI 294
                     +   +  ++LR N         + ++      N+ S+ L  NNL+     
Sbjct: 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA 185

Query: 295 ELCMFARLKN--LQYLYLSQNRLSVN------TKLDANSTFPKLLKLGLSACNISE---- 342
           EL  F       +  L LS N L +           +      ++ L L    +      
Sbjct: 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN--HVVSLNLCLNCLHGPSLE 243

Query: 343 -FPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK-----DTLYNLNLSDNFLTD 391
                  S   L+ + L  + +          +G        +  ++ +   +  
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 59/358 (16%), Positives = 99/358 (27%), Gaps = 87/358 (24%)

Query: 279 NLTSIRLSSNNLS--GHIELC-MFARLK-NLQYLYLSQNRLSVN------TKLDANSTFP 328
            +TS+ LS NNL     +EL   FA    ++  L LS N L           L A     
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-- 80

Query: 329 KLLKLGLSACNISE-----FPDFLRSQD-RLEWLQLSENKIYGRIPNWFWDIG------- 375
            +  L LS   +S          L +    +  L L  N                     
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS--------SKSSSEFKQA 132

Query: 376 ----KDTLYNLNLSDNFLTD--------VEQVPLKNLRFLDLRSNLLQ--------GSVM 415
                 ++ +LNL  N L          +      N+  L+LR N L           + 
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192

Query: 416 VLPPRLIFFSISNNKLTGEIPCSFCTA-----APIEFIDLSNNSLSGP----IPECLVDS 466
            +P  +    +S N L  +               +  ++L  N L GP    +       
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 467 ITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNR 526
             L  + L  +        +S                   L  +  N  ++ +++     
Sbjct: 253 KHLQTVYLDYDIVK----NMSKEQCKA-------------LGAAFPNIQKIILVDKNGKE 295

Query: 527 IDDTFPHWLAQLPE-----LLVLILRSNKFY---GLIGNTDARVIFPKLRILDLSRNE 576
           I  +    ++ L         V  L +           N +   I  +LR    +   
Sbjct: 296 IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 40/310 (12%), Positives = 89/310 (28%), Gaps = 77/310 (24%)

Query: 445 IEFIDLSNNSLSGPIPECLVDSI-----TLIWLDLHLNSFNGSIPQ-----ISANGSGLV 494
           +  +DLS N+L       L+ +      ++  L+L  NS            ++A  + + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 495 NLILNDNQFEGPLPQSLA-----NCSRLQVLNVANNRIDDTFPHWLAQL-----PELLVL 544
           +L L+ N         L          + VL++  N           Q        +  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 545 ILRSNKFYGLIGNTDARVIFP-------KLRILDLSRNEFT--GVLPTRYFQNLKAMMRG 595
            LR N     +G   +  +          +  L+L  N               L   +  
Sbjct: 144 NLRGND----LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC------AELAKFLAS 193

Query: 596 SNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNL 655
                                 ++  +D+  N+L +    + +               N 
Sbjct: 194 IPA-------------------SVTSLDLSANLLGLKSYAELAY--------IFSSIPNH 226

Query: 656 LKMLNFSHNHLTG----RIPSSLRNLTVLESLDLSSNRL-------VGQIPTQLTSLNFL 704
           +  LN   N L G     +     +L  L+++ L  + +          +     ++  +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 705 SKLNLSHNQL 714
             ++ +  ++
Sbjct: 287 ILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 45/289 (15%), Positives = 90/289 (31%), Gaps = 66/289 (22%)

Query: 346 FLRSQDRLEWLQLSENKIYGRIPNWFWDIG-----------KDTLYNLNLSDNFLTDVE- 393
           F      +  L LS N +        + I              ++ +LNLS N L     
Sbjct: 17  FTSIPHGVTSLDLSLNNL--------YSISTVELIQAFANTPASVTSLNLSGNSLGFKNS 68

Query: 394 -------QVPLKNLRFLDLRSN--------LLQGSVMVLPPRLIFFSISNNKLTGEIPCS 438
                       N+  L+L  N         L  ++  +P  +    +  N  + +    
Sbjct: 69  DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128

Query: 439 FCTA-----APIEFIDLSNNSLSGP----IPECLVD-SITLIWLDLHLNSF-NGSIPQIS 487
           F  A     A I  ++L  N L       + + L      +  L+L  N+  + +  +++
Sbjct: 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188

Query: 488 ----ANGSGLVNLILNDNQFEGPLPQSLA-----NCSRLQVLNVANNRIDDTFPHWLAQL 538
               +  + + +L L+ N         LA       + +  LN+  N +       L  L
Sbjct: 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248

Query: 539 ----PELLVLILRSNKFYGLIGNTDARVIF------PKLRILDLSRNEF 577
                 L  + L  +     +     + +        K+ ++D +  E 
Sbjct: 249 KDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 48/384 (12%), Positives = 109/384 (28%), Gaps = 97/384 (25%)

Query: 378 TLYNLNLSDNFLTDVE--------QVPLKNLRFLDLRSNLLQGS--------VMVLPPRL 421
            + +L+LS N L  +              ++  L+L  N L           +  +P  +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 422 IFFSISNNKLTGEIPCSFCTA-----APIEFIDLSNNSLSGPIPECLVDSI-----TLIW 471
              ++S N L+ +               I  +DL  N  S         +      ++  
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 472 LDLHLNSF-NGSIPQIS----ANGSGLVNLILNDNQFEGPLPQSLA-----NCSRLQVLN 521
           L+L  N     S  ++     A  + + +L L  N         LA       + +  L+
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD 202

Query: 522 VANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVL 581
           ++ N +       LA +         S                  +  L+L  N   G  
Sbjct: 203 LSANLLGLKSYAELAYI-------FSSIP--------------NHVVSLNLCLNCLHG-- 239

Query: 582 PTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNR 641
                 +L+ +    ++                    L+ + ++ +I+         +  
Sbjct: 240 -----PSLENLKLLKDSLK-----------------HLQTVYLDYDIVKNMSKEQCKA-- 275

Query: 642 FEGQIPEVVGKLNLLKMLNFSHNHLTG----RIPSSLRNL-TVLESLDLSSNRLVGQIPT 696
               +      +  + +++ +   +       I + +R L    +   L +  L+     
Sbjct: 276 ----LGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKH 331

Query: 697 QLTSLNF-----LSKLNLSHNQLE 715
           Q    +      L +   +   L 
Sbjct: 332 QTNIEDLNIPDELRESIQTCKPLL 355

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 234 LRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSG 292
           L L+ N L       LF  LP+L  + L+ N+ T  I    FE   ++  ++L  N +  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 293 HIELCMFARLKNLQYLYLSQNRLS 316
            I   MF  L  L+ L L  N++S
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 154 ANLPQLT-SLSLSYNHFSGHIPS-FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLD 211
            ++P  T  L L+ N             L  L  L L++N L G  P++F   + +  L 
Sbjct: 25  RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84

Query: 212 LSWNQLTGRLPS-CLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN 264
           L  N++   + +    GL  L TL L  N ++  +    F  L  L  ++L  N
Sbjct: 85  LGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPAS--LANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYL 186
            ++    + L L   N +G I +      LP L  L L  N  +G  P+       +  L
Sbjct: 25  RDIPLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83

Query: 187 NLEQNNLVGGIPD-SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
            L +N +   I +  F+ L QL  L+L  NQ++  +P   + L +L +L L+ N  N
Sbjct: 84  QLGENKI-KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 21/171 (12%)

Query: 138 LHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGI 197
           LH      I  + A+L+ L     L+LS N+    I S LS ++ L  L+L +N +   I
Sbjct: 30  LHG-MIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
            +       L  L +S+NQ+   L S ++ L NL  L +S N +           L  LE
Sbjct: 86  ENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 258 VIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL 308
            + L  N                       NN +    + +  RL NL+ L
Sbjct: 144 DLLLAGNPLYNDYK---------------ENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 17/166 (10%)

Query: 177 LSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRL 236
            +  +++  L+     +   +  +   L     L LS N +  ++ S L G+ NL  L L
Sbjct: 22  ATEAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSL 77

Query: 237 SGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIEL 296
             N +       L  V   LE + +  N+   S+ S I +LVNL  + +S+N ++   E+
Sbjct: 78  GRNLI--KKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEI 133

Query: 297 CMFARLKNLQYLYLSQNRLSVNTKLDAN---------STFPKLLKL 333
              A L  L+ L L+ N L  + K +              P L KL
Sbjct: 134 DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 301 RLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSE 360
            LK  ++L LS N +    K+ + S    L  L L    I +  +     D LE L +S 
Sbjct: 46  TLKACKHLALSTNNI---EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102

Query: 361 NKIYGRIPNWFWDIGKDTLYNL---NLSDNFLTDVEQV----PLKNLRFLDLRSN 408
           N+I   +         + L NL    +S+N +T+  ++     L  L  L L  N
Sbjct: 103 NQI-ASLSGI------EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 61/199 (30%)

Query: 9   LDLSCSWLHGSIPS----NSSLFLLPYLETLNLGSNDFNSSLIS--SGFGRLISLTHLNL 62
            +     LHG IP     +++L  L   + L L +N      I   S    + +L  L+L
Sbjct: 23  TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-----NIEKISSLSGMENLRILSL 77

Query: 63  SNSYFSGQIPSEISQLSKMLS----LDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVD 118
             +        +I  L  +      L +S N    +        IE L  L+ L +S   
Sbjct: 78  GRNLI-----KKIENLDAVADTLEELWISYNQIASLSG------IEKLVNLRVLYMSN-- 124

Query: 119 MSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYN----------H 168
                      N  ++   +              LA L +L  L L+ N           
Sbjct: 125 -----------NKITNWGEI------------DKLAALDKLEDLLLAGNPLYNDYKENNA 161

Query: 169 FSGHIPSFLSHLKQLYYLN 187
            S +    +  L  L  L+
Sbjct: 162 TSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRL--V 691
           ++    N  + +I  +    + L+ L  S+N +   + S +  L  L  L +S+N++   
Sbjct: 74  ILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNW 130

Query: 692 GQIPTQLTSLNFLSKLNLSHNQLEGPIPQ 720
           G+I  +L +L+ L  L L+ N L     +
Sbjct: 131 GEI-DKLAALDKLEDLLLAGNPLYNDYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 469 LIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID 528
           L  L L  N     I  + A    L  L ++ NQ        +     L+VL ++NN+I 
Sbjct: 72  LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKIT 128

Query: 529 DTFP-HWLAQLPELLVLILRSNKFYGLIGNTDA--------RVIFPKLRILD 571
           +      LA L +L  L+L  N  Y      +A            P L+ LD
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 641 RFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTS 700
            FE +   V  +   ++ L+     +  ++ ++L  L   + L LS+N +  +I + L+ 
Sbjct: 13  IFEERKSVVATEAEKVE-LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSG 68

Query: 701 LNFLSKLNLSHNQLE 715
           +  L  L+L  N ++
Sbjct: 69  MENLRILSLGRNLIK 83

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 203 NLTQLSFLDLSWNQLT-GRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHL 261
               +  L L   +   G++        NL  L L    L  ++ +     LP L+ + L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN--LPKLPKLKKLEL 78

Query: 262 RDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
            +NR  G +     +L NLT + LS N L     L    +L+ L+ L L   
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 40/188 (21%), Positives = 60/188 (31%), Gaps = 58/188 (30%)

Query: 80  KMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLH 139
           + L LD  K+++ +IE     GL      L+ L L  V + ++                 
Sbjct: 27  RELVLDNCKSNDGKIE-----GLTAEFVNLEFLSLINVGLISV----------------- 64

Query: 140 LTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPD 199
                      ++L  LP+L  L LS N   G +      L  L +LNL  N L      
Sbjct: 65  -----------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK----- 108

Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIP--SWLFTVLPYLE 257
                          + L       LK L  L +L L    +         +F +LP L 
Sbjct: 109 -------------DISTL-----EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150

Query: 258 VIHLRDNR 265
            +   D  
Sbjct: 151 YLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 473 DLHLNSFNGSIPQISANGSGLVNLI---LNDNQFEGPLPQSLANCSRLQVLNVANNRIDD 529
           +L L++   +  +I    +  VNL    L +         +L    +L+ L ++ NRI  
Sbjct: 28  ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG 85

Query: 530 TFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFT 578
                  +LP L  L L  NK   +    +       L+ LDL   E T
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 633 LVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVG 692
           LV+D   +  +G+I  +  +   L+ L+  +  L   + S+L  L  L+ L+LS NR+ G
Sbjct: 29  LVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFG 85

Query: 693 QIPTQLTSLNFLSKLNLSHNQLE 715
            +      L  L+ LNLS N+L+
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 215 NQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTI 274
            +L  R P+ ++       L L     N      L      LE + L +     S+ S +
Sbjct: 16  LELRNRTPAAVR------ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNL 67

Query: 275 FELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLG 334
            +L  L  + LS N +       +  +L NL +L LS N+L   + L+       L  L 
Sbjct: 68  PKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 335 LSACNISEFPDF 346
           L  C ++   D+
Sbjct: 127 LFNCEVTNLNDY 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 9/139 (6%)

Query: 443 APIEFIDLSNNSLSGPIPECLVDSIT-LIWLDLHLNSFNGSIPQIS--ANGSGLVNLILN 499
           A +  + L N   +    E L      L +L L        +  +S       L  L L+
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKKLELS 79

Query: 500 DNQFEGPLPQSLANCSRLQVLNVANNRIDDTFP-HWLAQLPELLVLILRSNKFYGLIGN- 557
           +N+  G L         L  LN++ N++ D      L +L  L  L L + +   L    
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139

Query: 558 TDARVIFPKLRILDLSRNE 576
                + P+L  LD    E
Sbjct: 140 ESVFKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 36/158 (22%), Positives = 52/158 (32%), Gaps = 34/158 (21%)

Query: 32  LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDE 91
           +  L L +   N   I       ++L  L+L N      + + + +L K+  L+LS+N  
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRI 83

Query: 92  VRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPA 151
                     L E L  L  L LS              N    +S L             
Sbjct: 84  FGGLD----MLAEKLPNLTHLNLSG-------------NKLKDISTLE------------ 114

Query: 152 SLANLPQLTSLSLSYN---HFSGHIPSFLSHLKQLYYL 186
            L  L  L SL L      + + +  S    L QL YL
Sbjct: 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 203 NLTQLSFLDLSWNQLT-GRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHL 261
             + +  L L  ++   G+L         L  L      L  +I +     L  L+ + L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN--LPKLNKLKKLEL 71

Query: 262 RDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
            DNR +G +     +  NLT + LS N +     +    +L+NL+ L L   
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 465 DSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQF---EGPLPQSLANCSRLQVLN 521
             +  + LD   ++  G +  ++     L  L   +             L   ++L+ L 
Sbjct: 17  SDVKELVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLE 70

Query: 522 VANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFT 578
           +++NR+         + P L  L L  NK   L    +       L+ LDL   E T
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL-STIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 31/138 (22%), Positives = 44/138 (31%), Gaps = 30/138 (21%)

Query: 104 ENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNL--IGPIPASLANLPQLTS 161
              + +KELVL     +   L+         L +L      L  I  +P     L +L  
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEE-LEFLSTINVGLTSIANLP----KLNKLKK 68

Query: 162 LSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRL 221
           L LS N  SG +         L +LNL  N +                     + +    
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK------------------DLSTI---- 106

Query: 222 PSCLKGLRNLVTLRLSGN 239
              LK L NL +L L   
Sbjct: 107 -EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 633 LVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVG 692
           LV+D S +  EG++  +  +   L+ L+  +  LT  I ++L  L  L+ L+LS NR+ G
Sbjct: 22  LVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG 78

Query: 693 QIPTQLTSLNFLSKLNLSHNQLE 715
            +         L+ LNLS N+++
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 226 KGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRL 285
           +   ++  L L  +  N      L      LE +   +   T SI + + +L  L  + L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLEL 71

Query: 286 SSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPD 345
           S N +S      +  +  NL +L LS N++   + ++       L  L L  C ++   D
Sbjct: 72  SDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 346 F 346
           +
Sbjct: 131 Y 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 4/115 (3%)

Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
             + N  +   LDL   ++   + +    L     +  S N +   +    F +L  L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG--FPLLRRLKT 68

Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
           + + +NR           L +LT + L++N+L    +L   A LK+L YL + +N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 7/137 (5%)

Query: 210 LDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS 269
           + L+   +     +          L L G  +   +   L   L   + I   DN     
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 270 IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPK 329
           +      L  L ++ +++N +   I   +   L +L  L L+ N L     LD  ++   
Sbjct: 57  L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 330 LLKLGLSACNISEFPDF 346
           L  L +    ++    +
Sbjct: 115 LTYLCILRNPVTNKKHY 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 25/136 (18%), Positives = 40/136 (29%), Gaps = 28/136 (20%)

Query: 104 ENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLS 163
            N  + +EL L    +  I    +L         +  +  N I  +      L +L +L 
Sbjct: 16  TNAVRDRELDLRGYKIPVIE---NLGATLDQFDAIDFSD-NEIRKL-DGFPLLRRLKTLL 70

Query: 164 LSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPS 223
           ++ N            L  L  L L  N+LV                      L      
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLV------------------ELGDL-----D 107

Query: 224 CLKGLRNLVTLRLSGN 239
            L  L++L  L +  N
Sbjct: 108 PLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 461 ECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQ---FEGPLPQSLANCSRL 517
               +++    LDL        I  + A       +  +DN+    +G          RL
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRL 66

Query: 518 QVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEF 577
           + L V NNRI          LP+L  LIL +N    L G+ D       L  L + RN  
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSLTYLCILRNPV 125

Query: 578 T 578
           T
Sbjct: 126 T 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
            +D    +    I  +   L+    ++FS N +  ++      L  L++L +++NR+   
Sbjct: 23  ELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRI 79

Query: 694 IPTQLTSLNFLSKLNLSHNQLE 715
                 +L  L++L L++N L 
Sbjct: 80  GEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 314 RLSVN--TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWF 371
           +L+     +    +   +  +L L    I    +   + D+ + +  S+N+I  ++  + 
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKLDGF- 60

Query: 372 WDIGKDTLYNL---NLSDNFLTDVEQVP---LKNLRFLDLRSNLLQ 411
                  L  L    +++N +  + +     L +L  L L +N L 
Sbjct: 61  -----PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 28/130 (21%)

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT 244
            L LE N L       F  LTQL+ L LS NQ+                          +
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-------------------------S 66

Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLK 303
           +P  +F  L  L +++L +N+   S+P+ +F+ L  L  + L +N L   +   +F RL 
Sbjct: 67  LPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLT 124

Query: 304 NLQYLYLSQN 313
           +LQ ++L  N
Sbjct: 125 SLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 38/120 (31%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS 208
           IP+S       T L L  N            L QL  L+L QN +       F  LT+L+
Sbjct: 26  IPSSA------TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79

Query: 209 FLDLSWNQLTGRLPSCLKG----LRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN 264
            L L  N+L   LP    G    L  L  L L  N L  ++P  +F  L  L+ I L  N
Sbjct: 80  ILYLHENKLQ-SLP---NGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 257 EVIHLRDNRFTGSIPSTIF-ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
             + L  N+   S+P  +F +L  LT + LS N +   +   +F +L  L  LYL +N+L
Sbjct: 31  TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKL 88

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.0 bits (131), Expect = 4e-08
 Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 22/197 (11%)

Query: 142 GCNLIGPIPASLANLPQLTSLSLSYNHFS---------GHIPSFLSHLKQLYYLNLEQNN 192
             ++   I  +         L      F            +   L  +  L  L ++  N
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183

Query: 193 LVGGIPDSFVNLTQLSFL--DLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLF 250
            +        NL  L  +   L  + +   L S L  L  LV      +       +   
Sbjct: 184 NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243

Query: 251 TVL-----PYLEVIHLRDNRFTGSIPSTIFE---LVNLTSIRLSSNNLS--GHIELC-MF 299
            +      P L+ + + D      +     E   L  L ++ +S+  L+  G   L    
Sbjct: 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303

Query: 300 ARLKNLQYLYLSQNRLS 316
            ++K+L+++ +  N LS
Sbjct: 304 DKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.0 bits (131), Expect = 5e-08
 Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 27/217 (12%)

Query: 36  NLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIE 95
            +  N    +     F   I      +S       +   +  +  + +L +   + + I 
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIE-QVDLSPVLDAMPLLNNLKIKGTNNLSIG 188

Query: 96  SPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHL----------TGCNL 145
                   +    LK L +    +   V++  L +   +L  L L             N+
Sbjct: 189 K-------KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241

Query: 146 IGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSH---LKQLYYLNLEQNNL----VGGIP 198
             P+  S    P L  L +        +         L QL  +++    L       + 
Sbjct: 242 FRPL-FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300

Query: 199 DSFVNLTQLSFLDLSWNQLTGR-LPSCLKGLRNLVTL 234
           D    +  L F+++ +N L+        K L   + +
Sbjct: 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDV 337

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.6 bits (125), Expect = 3e-07
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 18/141 (12%)

Query: 132 SSSLSYLHLTGCNLIGPIPASLA--NLPQLTSLSLSY---NHFSGHIPSFLS------HL 180
             +L  L +    L   +   +   +LP L  L L     ++      +           
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 181 KQLYYLNLEQNNLVGGIPDSFVN---LTQLSFLDLSWNQLTGR----LPSCLKGLRNLVT 233
             L +L +        + + F+    L QL  +D+S   LT      L   +  +++L  
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 234 LRLSGNSLNGTIPSWLFTVLP 254
           + +  N L+  +   L   LP
Sbjct: 312 INMKYNYLSDEMKKELQKSLP 332

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 8e-08
 Identities = 88/585 (15%), Positives = 164/585 (28%), Gaps = 164/585 (28%)

Query: 305 LQYLYLSQNRLSVNTK-----LDANSTFPKLLKLGLSAC---NISEFPDFLRSQDRLEWL 356
            QY Y  ++ LSV         D       + K  LS     +I    D +    RL W 
Sbjct: 14  HQYQY--KDILSVFEDAFVDNFDCKDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 357 QLSENK-IYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVM 415
            LS+ + +  +    F +      Y   L     T+  Q  +    +++ R   L     
Sbjct: 71  LLSKQEEMVQK----FVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQ 124

Query: 416 VLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFID-----------LSNNSL-SGPIPECL 463
           V        ++S  +   ++  +     P + +            ++ +   S  +   +
Sbjct: 125 VFAKY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 464 VDSITLIWLDL-----------HLNSFNGSI-PQISANGSGLVNLILNDNQFEGPL---- 507
              I   WL+L            L      I P  ++      N+ L  +  +  L    
Sbjct: 181 DFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 508 -PQSLANCSRLQVL-NVANNRIDDTF------------PHWLAQLPELLVLILRSNKFYG 553
             +   NC  L VL NV N +  + F                  L       +  +    
Sbjct: 239 KSKPYENC--LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 554 LIGNTDARVIFPK---LRILDLSRNEFTGVLP--------------TR--YFQNLKAM-M 593
            +   + + +  K    R  DL R E     P                   ++++    +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 594 RGSNTSTVQVQYMHRFGRYYSAFFTL-KGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGK 652
                S++ V     + + +           +   +LS+        +  +  +  VV K
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW-----FDVIKSDVMVVVNK 410

Query: 653 LNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHN 712
           L+   ++       T  IPS          L+L              +L         H 
Sbjct: 411 LHKYSLVEKQPKESTISIPSIY--------LELKVKLE------NEYAL---------HR 447

Query: 713 QLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAMM 772
            +   +           D Y  N+    F   D      D         +         +
Sbjct: 448 SI---V-----------DHY--NI-PKTFDSDDLIPPYLD-------QYFYSH------I 477

Query: 773 GY------ASGLVIGFSIGYMAFATGRPRWLVRMVERKRIRRQST 811
           G+          +  F + ++ F     R+L    E+K IR  ST
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDF-----RFL----EQK-IRHDST 512

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 55/341 (16%), Positives = 110/341 (32%), Gaps = 92/341 (26%)

Query: 8   GLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLI----SSGFGRLISLTHLNLS 63
              L   +L            LP  E L   +N    S+I      G     +  H+N  
Sbjct: 303 VKSLLLKYLDCRPQD------LP-REVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 64  N------SYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPV----WKGLIENLTKLKELV 113
                  S  +   P+E  ++   LS+    +    I + +    W  +I++      +V
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV-FPPS--AHIPTILLSLIWFDVIKSDV---MVV 407

Query: 114 LSEVDMSTIVLDYSLTN--LSSSLSYLHLTGCNLIGPIPASLANLPQL-TSLSLSYN--- 167
           ++++        YSL       S   +     ++   +   L N   L  S+   YN   
Sbjct: 408 VNKL------HKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 168 ----------HFSGHIPSFLS-HLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQ 216
                     +   +  S +  HLK     N+E    +      F  +    FLD  +  
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLK-----NIEHPERM----TLFRMV----FLDFRF-- 502

Query: 217 LTGRLPSCLKGLRNLVTLRLSGNSLN--GTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTI 274
                      L     +R    + N  G+I + L  +  Y   I   D ++   + + I
Sbjct: 503 -----------LEQ--KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV-NAI 548

Query: 275 FELVNLTSIRLSSNNL-SGHIELCMFARLKNLQYLYLSQNR 314
            + +     ++  N + S + +L   A +   + ++   ++
Sbjct: 549 LDFL----PKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 3e-07
 Identities = 88/499 (17%), Positives = 146/499 (29%), Gaps = 162/499 (32%)

Query: 220 RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVN 279
           +L   L  LR    + + G  + G+  +W+      L+V      +    +   IF L N
Sbjct: 139 KLRQALLELRPAKNVLIDG--VLGSGKTWV-----ALDV--CLSYKVQCKMDFKIFWL-N 188

Query: 280 LTSIRLSSNNLSGHIELCMFARLKNLQYL----YLSQNRLSVNTKLDANSTFPKLLKLGL 335
           L +            E  +   L+ L Y     + S++  S N KL  +S   +L +L  
Sbjct: 189 LKNCN--------SPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 336 SACNISEFPDFLRSQDRLEWLQLSE--NKIYGRIPNWFWDIGKDTL-------------- 379
           S      + + L        L L    N    +  N F ++    L              
Sbjct: 240 SK----PYENCL--------LVLLNVQNA---KAWNAF-NLSCKILLTTRFKQVTDFLSA 283

Query: 380 -----YNLNLSDNFLTDVEQVPL--K--NLRFLDLRSNLLQGSVMVL----------PPR 420
                 +L+     LT  E   L  K  + R  DL   +L  +   L             
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 421 LIFFS-ISNNKLTGEIPCSFCTAAPIE----FIDLS---NNSLSGPIPECLVDSITLIWL 472
              +  ++ +KLT  I  S     P E    F  LS    ++    IP  L   ++LIW 
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTIL---LSLIWF 397

Query: 473 DLHLNSFNGSIPQISANG---SGLVN-------LILNDNQFEGPLPQSLANCSRLQVLN- 521
           D+       S   +  N      LV        + +     E               L+ 
Sbjct: 398 DV-----IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-----LKVKLENEYALHR 447

Query: 522 --VANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIG-------NTDARVIFP------- 565
             V +  I  TF       P L         FY  IG       + +   +F        
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYL------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 566 ----KLRILDLSRNEFTGVLPT----------------RYFQNLKAMM-----------R 594
               K+R    + N    +L T                +Y + + A++            
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Query: 595 GSNTSTVQVQYMHRFGRYY 613
              T  +++  M      +
Sbjct: 562 SKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 105/634 (16%), Positives = 182/634 (28%), Gaps = 198/634 (31%)

Query: 70  QIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLT 129
                +S   ++    LSK +E+     V K + E L                  +Y   
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEVLRI----------------NY--- 91

Query: 130 NLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLE 189
                  +L                    ++ +       S     ++    +LY     
Sbjct: 92  ------KFL--------------------MSPIKTEQRQPSMMTRMYIEQRDRLY----- 120

Query: 190 QNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWL 249
             N         V+  Q       + +L       L  LR    + + G  + G+  +W+
Sbjct: 121 --NDNQVFAKYNVSRLQP------YLKLR----QALLELRPAKNVLIDG--VLGSGKTWV 166

Query: 250 FTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL- 308
                 L+V      +    +   IF L NL +            E  +   L+ L Y  
Sbjct: 167 -----ALDV--CLSYKVQCKMDFKIFWL-NLKNCN--------SPETVL-EMLQKLLYQI 209

Query: 309 ---YLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRS-------QDRLEW--- 355
              + S++  S N KL  +S   +L +L  S         +          Q+   W   
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-------KPYENCLLVLLNVQNAKAWNAF 262

Query: 356 ------LQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPL--K--NLRFLDL 405
                 L  +  K   ++ + F      T  +L+     LT  E   L  K  + R  DL
Sbjct: 263 NLSCKILLTTRFK---QVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 406 RSNLLQGSVMVL----------PPRLIFFS-ISNNKLTGEIPCSFCTAAPIE----FIDL 450
              +L  +   L                +  ++ +KLT  I  S     P E    F  L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 451 S---NNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANG---SGLVN-------LI 497
           S    ++    IP  L   ++LIW D+       S   +  N      LV        + 
Sbjct: 379 SVFPPSA---HIPTIL---LSLIWFDV-----IKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 498 LNDNQFEGPLPQSLANCSRLQVLN---VANNRIDDTFPHWLAQLPELLVLILRSNKFYGL 554
           +     E               L+   V +  I  TF       P L         FY  
Sbjct: 428 IPSIYLE-----LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL------DQYFYSH 476

Query: 555 IG-------NTDARVIFPKLRILDLSRNEFTGVLPTRYFQN-LKAMMRGSNTSTVQVQYM 606
           IG       + +   +F  +  LD            R+ +  ++      N S   +  +
Sbjct: 477 IGHHLKNIEHPERMTLFRMV-FLDF-----------RFLEQKIRHDSTAWNASGSILNTL 524

Query: 607 HRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSN 640
            +  ++Y  +        E  + +I   +DF   
Sbjct: 525 QQL-KFYKPYICDNDPKYERLVNAI---LDFLPK 554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 234 LRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSG 292
           L L+ N +   +   +F  L  L+ ++   N+ T +IP+ +F+ L  LT + L+ N+L  
Sbjct: 38  LWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 293 HIELCMFARLKNLQYLYLSQN 313
            I    F  LK+L ++YL  N
Sbjct: 96  -IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 14/95 (14%)

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS 208
           IP           L L+ N  +   P    HL  L  L    N L       F  LTQL+
Sbjct: 31  IPTDK------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84

Query: 209 FLDLSWNQLTGRLPSCLKG----LRNLVTLRLSGN 239
            LDL+ N L     S  +G    L++L  + L  N
Sbjct: 85  QLDLNDNHLK----SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKG----LRNLVTLRLSGNS 240
            L L  N +    P  F +L  L  L  + N+LT  +P+   G    L  L  L L+ N 
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPT---GVFDKLTQLTQLDLNDNH 92

Query: 241 LNGTIPSWLFTVLPYLEVIHLRDN 264
           L  +IP   F  L  L  I+L +N
Sbjct: 93  LK-SIPRGAFDNLKSLTHIYLYNN 115

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 234 LRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSG 292
           L L  N +   +   +F  L  L  + L +N+ T  +P+ +F+ L  LT + L+ N L  
Sbjct: 35  LYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 293 HIELCMFARLKNLQYLYLSQN 313
            I    F  LK+L +++L  N
Sbjct: 93  -IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 33/84 (39%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKG----LRNLVTLRLSGNS 240
            L L  N +    P  F  LTQL+ LDL  NQLT  LP+   G    L  L  L L+ N 
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPA---GVFDKLTQLTQLSLNDNQ 89

Query: 241 LNGTIPSWLFTVLPYLEVIHLRDN 264
           L  +IP   F  L  L  I L +N
Sbjct: 90  LK-SIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 16/96 (16%)

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDS-FVNLTQL 207
           IP +         L L  N  +   P     L QL  L+L+ N L   +P   F  LTQL
Sbjct: 28  IPTTT------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQL 80

Query: 208 SFLDLSWNQLTGRLPSCLKG----LRNLVTLRLSGN 239
           + L L+ NQL     S  +G    L++L  + L  N
Sbjct: 81  TQLSLNDNQLK----SIPRGAFDNLKSLTHIWLLNN 112

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 25/129 (19%)

Query: 135 LSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHI-PSFLSHLKQLYYLNLEQNNL 193
           +  +  T   ++      +  L  +  + L   H   +I    L  L QL  L       
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH---YIEDGCLERLSQLENLQK----- 114

Query: 194 VGGIPDSFVNLTQLSFLDLSWN-QLTGRLPSCLKGLRNLVTLRLSGNSL---NGTIPSWL 249
                        +  +++     +T +    L   RNL  L LS          I    
Sbjct: 115 ------------SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAF 162

Query: 250 FTVLPYLEV 258
            T LP LE+
Sbjct: 163 KTSLPSLEL 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	816
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.2 bits (217), Expect = 1e-19
 Identities = 58/285 (20%), Positives = 100/285 (35%), Gaps = 12/285 (4%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
            +L    + L L    +         NL  L +L L  N  S   P   + L +L  L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW 248
            +N L          L +L   +    ++   + + L     +V L  +    +G     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGA 145

Query: 249 LFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL 308
            F  +  L  I + D   T +IP  +    +LT + L  N ++          L NL  L
Sbjct: 146 -FQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDA-ASLKGLNNLAKL 200

Query: 309 YLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP 368
            LS           + +  P L +L L+   + + P  L     ++ + L  N I     
Sbjct: 201 GLS-FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 369 NWFWDIGKDT----LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNL 409
           N F   G +T       ++L  N +   E +     R + +R+ +
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWE-IQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 3e-16
 Identities = 55/266 (20%), Positives = 97/266 (36%), Gaps = 17/266 (6%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
               L+L N+  +     +   L  + +L L  N   +I      G    L KL+ L LS
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP----GAFAPLVKLERLYLS 87

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS 175
           +  +  +     +      L         +   +   L N   +  L  +    SG    
Sbjct: 88  KNQLKEL--PEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENG 144

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLR 235
               +K+L Y+ +   N+   IP        L+ L L  N++T    + LKGL NL  L 
Sbjct: 145 AFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 236 LSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSG--- 292
           LS NS++           P+L  +HL +N+    +P  + +   +  + L +NN+S    
Sbjct: 202 LSFNSISAVDNGS-LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 293 --HIELCMFARLKNLQYLYLSQNRLS 316
                     +  +   + L  N + 
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 3e-15
 Identities = 54/280 (19%), Positives = 104/280 (37%), Gaps = 13/280 (4%)

Query: 255 YLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNR 314
           +L V+   D      +P  +    +   + L +N ++  I+   F  LKNL  L L  N+
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK 66

Query: 315 LSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDR-LEWLQLSENKIYGRIPNWFWD 373
           +       A +   KL +L LS   + E P+ +    + L   +    K+   + N    
Sbjct: 67  I-SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

Query: 374 IGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTG 433
           +    L    L  + + +     +K L ++ +    +      LPP L    +  NK+T 
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 185

Query: 434 EIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGL 493
               S      +  + LS NS+S      L ++  L  L L+ N     +P   A+   +
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 244

Query: 494 VNLILNDNQFEG------PLPQSLANCSRLQVLNVANNRI 527
             + L++N            P      +    +++ +N +
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 8e-14
 Identities = 56/260 (21%), Positives = 96/260 (36%), Gaps = 21/260 (8%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           L L  + +    P   +   L  LE L L  N     L         +L  L +  +  +
Sbjct: 60  LILINNKISKISPG--AFAPLVKLERLYLSKN----QLKELPEKMPKTLQELRVHENEIT 113

Query: 69  GQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSL 128
               S  + L++M+ ++L  N      S +  G  + + KL  + +++ +++TI      
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNP--LKSSGIENGAFQGMKKLSYIRIADTNITTI-----P 166

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
             L  SL+ LHL G  +     ASL  L  L  L LS+N  S      L++   L  L+L
Sbjct: 167 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226

Query: 189 EQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG------RLPSCLKGLRNLVTLRLSGNSLN 242
             N LV  +P    +   +  + L  N ++         P       +   + L  N + 
Sbjct: 227 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

Query: 243 -GTIPSWLFTVLPYLEVIHL 261
              I    F  +     + L
Sbjct: 286 YWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 2e-12
 Identities = 43/256 (16%), Positives = 88/256 (34%), Gaps = 14/256 (5%)

Query: 445 IEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFE 504
              +DL NN ++        +   L  L L  N  +   P   A    L  L L+ NQ +
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 505 GPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIF 564
             LP+ +    +   L V  N I          L +++V+ L +N          A    
Sbjct: 93  E-LPEKMPKTLQE--LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 565 PKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQ----VQYMHRFGRYYSAFFTLK 620
            KL  + ++    T  +P     +L  +    N  T      ++ ++   +   +F ++ 
Sbjct: 150 KKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 621 GIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG------RIPSSL 674
            +D      +  L     +N    ++P  +     ++++   +N+++         P   
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 675 RNLTVLESLDLSSNRL 690
                   + L SN +
Sbjct: 269 TKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 3e-11
 Identities = 53/289 (18%), Positives = 92/289 (31%), Gaps = 13/289 (4%)

Query: 460 PECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQV 519
             C      +   DL L      +P           L L +N+          N   L  
Sbjct: 6   FRCQCHLRVVQCSDLGLEKVPKDLP------PDTALLDLQNNKITEIKDGDFKNLKNLHT 59

Query: 520 LNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGL---IGNTDARVIFPKLRILDLSRNE 576
           L + NN+I    P   A L +L  L L  N+   L   +  T   +   +  I  + ++ 
Sbjct: 60  LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 119

Query: 577 FTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVID 636
           F G+      +     ++ S       Q M +      A   +  I     +      + 
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--QGLPPSLTELH 177

Query: 637 FSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPT 696
              N+        +  LN L  L  S N ++     SL N   L  L L++N+LV ++P 
Sbjct: 178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 236

Query: 697 QLTSLNFLSKLNLSHNQLEG-PIPQGPQFNTFQSDSYIGNLGLCGFPLS 744
            L    ++  + L +N +                 +    + L   P+ 
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 20/95 (21%), Positives = 35/95 (36%)

Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
             +L+  +N +T       +NL  L +L L +N++    P     L  L +L LS NQL+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 716 GPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNI 750
               + P+              +     +     I
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.8 bits (211), Expect = 2e-18
 Identities = 77/366 (21%), Positives = 132/366 (36%), Gaps = 32/366 (8%)

Query: 29  LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSK 88
           L  + TL        S     G   L +LT +N SN+  +   P  +  L+K++ + ++ 
Sbjct: 43  LDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97

Query: 89  NDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGP 148
           N    I        +  LT     +     +  +     L   S+++S +          
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 149 IPASLANLPQLTSLSLSYNHFS-------GHIPSFLSHLKQLYYLNLEQNNLVGGIPDSF 201
             +    +  L  L+                  S L+ L  L  L    N +    P   
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 202 VNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHL 261
           +  T L  L L+ NQL       L  L NL  L L+ N ++   P    + L  L  + L
Sbjct: 218 L--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKL 270

Query: 262 RDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKL 321
             N+ +   P     L  LT++     N +   ++   + LKNL YL L  N +S    +
Sbjct: 271 GANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS---DI 322

Query: 322 DANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYN 381
              S+  KL +L  +   +S+    L +   + WL    N+I    P    ++ +  +  
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTP--LANLTR--ITQ 377

Query: 382 LNLSDN 387
           L L+D 
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.2 bits (199), Expect = 7e-17
 Identities = 69/436 (15%), Positives = 122/436 (27%), Gaps = 73/436 (16%)

Query: 277 LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLS 336
           L       L   N++  +       L  +  L   +  +     +D       L ++  S
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFS 74

Query: 337 ACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP 396
              +++          L  L                    +       ++          
Sbjct: 75  NNQLTDITPL----KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 397 LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS 456
           L NL  L+L SN +     +     +      N++T   P +  T      I  +  S  
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 457 GPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSR 516
             + +       L  L    N  +   P                              + 
Sbjct: 191 SVLAKL----TNLESLIATNNQISDITPLG--------------------------ILTN 220

Query: 517 LQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNE 576
           L  L++  N++ D     LA L  L  L L +N+   L   +       KL  L L  N+
Sbjct: 221 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQ 274

Query: 577 FTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVID 636
            + + P      L  +    N         +                     L     + 
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISN---------------------LKNLTYLT 313

Query: 637 FSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPT 696
              N      P  V  L  L+ L F++N ++    SSL NLT +  L    N++    P 
Sbjct: 314 LYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP- 368

Query: 697 QLTSLNFLSKLNLSHN 712
            L +L  +++L L+  
Sbjct: 369 -LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 75/388 (19%), Positives = 131/388 (33%), Gaps = 61/388 (15%)

Query: 104 ENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLS 163
             L +  + VL + +++  V    L  +++    L      +       +  L  LT ++
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTT----LQADRLGIKSI--DGVEYLNNLTQIN 72

Query: 164 LSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPD------------------------ 199
            S N  +   P  L +L +L  + +  N +    P                         
Sbjct: 73  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 200 ------------SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
                       +  +++ LS L        G   + LK L NL TL     S N     
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 248 WLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY 307
            +   L  LE +   +N+ +   P  I    NL  + L+ N L     +   A L NL  
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD---IGTLASLTNLTD 245

Query: 308 LYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRI 367
           L L+ N++S    L   S   KL +L L A  IS                        ++
Sbjct: 246 LDLANNQIS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL-----ELNENQL 297

Query: 368 PNWFWDIGKDTLYNLNLSDNFLTDVEQV-PLKNLRFLDLRSNLLQG-SVMVLPPRLIFFS 425
            +         L  L L  N ++D+  V  L  L+ L   +N +   S +     + + S
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLS 357

Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNN 453
             +N+++   P +  T   I  + L++ 
Sbjct: 358 AGHNQISDLTPLANLTR--ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 6e-14
 Identities = 72/384 (18%), Positives = 128/384 (33%), Gaps = 53/384 (13%)

Query: 226 KGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRL 285
             L   +   L   ++  T+     T L  +  +         SI   +  L NLT I  
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINF 73

Query: 286 SSNNLSGHIELCMFARLKNLQY----------------LYLSQNRLSVNTKLDANSTFPK 329
           S+N L+    L    +L ++                  L       +  T +D       
Sbjct: 74  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 330 LLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYN-------- 381
           L +L LS+  IS+           +    ++      + N       D   N        
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 382 --------LNLSDNFLTDV-EQVPLKNLRFLDLRSNLLQG-SVMVLPPRLIFFSISNNKL 431
                   L  ++N ++D+     L NL  L L  N L+    +     L    ++NN++
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 253

Query: 432 TGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS 491
           +   P S  T   +  + L  N +S   P   + ++T + L+ +       I  +     
Sbjct: 254 SNLAPLSGLTK--LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL----K 307

Query: 492 GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
            L  L L  N      P  +++ ++LQ L  ANN++ D     LA L  +  L    N+ 
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 552 YGLIGNTDARVIFPKLRILDLSRN 575
             L    +      ++  L L+  
Sbjct: 364 SDLTPLAN----LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 2e-12
 Identities = 55/346 (15%), Positives = 115/346 (33%), Gaps = 24/346 (6%)

Query: 377 DTLYNLNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEI 435
           D +  L      +  ++ V  L NL  ++  +N L      + P      + N     +I
Sbjct: 44  DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITP------LKNLTKLVDI 93

Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
             +    A I  +    N     +    +  I  +    +LN    S   IS   +    
Sbjct: 94  LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL 153

Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
             L    F   +       +   +  +  +    +    LA+L  L  LI  +N+   + 
Sbjct: 154 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 213

Query: 556 GNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSN--TSTVQVQYMHRFGRYY 613
                  I   L  L L+ N+   +       NL  +   +N  ++   +  + +     
Sbjct: 214 ----PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 269

Query: 614 SAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSS 673
                +  I     + ++  +    +   +         L  L  L    N+++   P  
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP-- 324

Query: 674 LRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIP 719
           + +LT L+ L  ++N++     + L +L  ++ L+  HNQ+    P
Sbjct: 325 VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 13  CSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIP 72
                  +   S +  L  L  L L  N+ +     S    L  L  L  +N+  S    
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFANNKVSD--V 344

Query: 73  SEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSE 116
           S ++ L+ +  L    N    +        + NLT++ +L L++
Sbjct: 345 SSLANLTNINWLSAGHNQISDLTP------LANLTRITQLGLND 382

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (204), Expect = 4e-18
 Identities = 68/286 (23%), Positives = 107/286 (37%), Gaps = 16/286 (5%)

Query: 8   GLDLSCSWLH-GSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSY 66
            +  SC      ++P      +    + + L  N   S + ++ F    +LT L L ++ 
Sbjct: 13  KVTTSCPQQGLQAVPVG----IPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNV 67

Query: 67  FSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDY 126
            +    +  + L+ +  LDLS N ++R   P        L +L  L L         L  
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLHTLHLD--RCGLQELGP 122

Query: 127 SLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYL 186
            L    ++L YL+L    L      +  +L  LT L L  N  S         L  L  L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 187 NLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIP 246
            L QN +    P +F +L +L  L L  N L+      L  LR L  LRL+ N       
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

Query: 247 SWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSG 292
           +       +L+      +    S+P     L      RL++N+L G
Sbjct: 243 ARPL--WAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 61/266 (22%), Positives = 93/266 (34%), Gaps = 10/266 (3%)

Query: 149 IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLS 208
           +P  +        + L  N  S    +     + L  L L  N L      +F  L  L 
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 209 FLDLSWNQLTGRL-PSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267
            LDLS N     + P+   GL  L TL L        +   LF  L  L+ ++L+DN   
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 268 GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTF 327
                T  +L NLT + L  N +S  +    F  L +L  L L QNR++           
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 328 PKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPN-WFWDIGKDTLYNLNLSD 386
             +     +    +   + L     L++L+L++N           W      L     S 
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW----AWLQKFRGSS 257

Query: 387 NFLTDVEQVPLKNLRFLDLRSNLLQG 412
           + +       L       L +N LQG
Sbjct: 258 SEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 56/291 (19%), Positives = 90/291 (30%), Gaps = 27/291 (9%)

Query: 427 SNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQI 486
               L   +P     A   + I L  N +S            L  L LH N         
Sbjct: 19  PQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 487 SANGSGLVNLILNDNQFEGPL-PQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLI 545
               + L  L L+DN     + P +     RL  L++    + +  P     L  L  L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 546 LRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQY 605
           L+ N    L    D       L  L L  N  +  +P R F+ L ++ R        +  
Sbjct: 136 LQDNALQALP--DDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLL------LHQ 186

Query: 606 MHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNH 665
                 +  AF  L             + +   +N       E +  L  L+ L  + N 
Sbjct: 187 NRVAHVHPHAFRDLG----------RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 666 LTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEG 716
                  +      L+    SS+ +   +P +L   +      L+ N L+G
Sbjct: 237 WVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 43/277 (15%), Positives = 78/277 (28%), Gaps = 24/277 (8%)

Query: 417 LPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHL 476
           +P       +  N+++     SF     +  + L +N L+            L  LDL  
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 477 NSFNGSI-PQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWL 535
           N+   S+ P        L  L L+    +   P      + LQ L + +N +        
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 536 AQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRG 595
             L  L  L L  N+   +            L  L L +N    V P  +    + M   
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRG--LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 596 SNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNL 655
              + +            +                    +  + N +             
Sbjct: 208 LFANNLSALPTEALAPLRA-----------------LQYLRLNDNPWVC-DCRARPLWAW 249

Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVG 692
           L+    S + +   +P  L    +     L++N L G
Sbjct: 250 LQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 41/277 (14%), Positives = 72/277 (25%), Gaps = 25/277 (9%)

Query: 303 KNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENK 362
              Q ++L  NR+   + + A S F     L +   + +       +      L    + 
Sbjct: 32  AASQRIFLHGNRI---SHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 363 IYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLI 422
                           L  L                 L         L   +      L 
Sbjct: 88  SDNAQLRSVDPATFHGLGRL---------------HTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 423 FFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGS 482
           +  + +N L      +F     +  + L  N +S           +L  L LH N     
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 483 IPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELL 542
            P    +   L+ L L  N       ++LA    LQ L + +N               L 
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQ 251

Query: 543 VLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTG 579
                S++    +             +  L+ N+  G
Sbjct: 252 KFRGSSSEVPCSLPQR-----LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 44/255 (17%), Positives = 70/255 (27%), Gaps = 20/255 (7%)

Query: 491 SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNK 550
           +    + L+ N+       S   C  L +L + +N +          L  L  L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 551 FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFG 610
               +          +L  L L R     + P  +                    +    
Sbjct: 92  QLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFR------------------GLAALQ 132

Query: 611 RYYSAFFTLKGIDVEMNILSIFL-VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGR 669
             Y     L+ +  +       L  +    NR           L+ L  L    N +   
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 670 IPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQS 729
            P + R+L  L +L L +N L       L  L  L  L L+ N         P +   Q 
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

Query: 730 DSYIGNLGLCGFPLS 744
                +   C  P  
Sbjct: 253 FRGSSSEVPCSLPQR 267

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.4 bits (194), Expect = 1e-16
 Identities = 54/258 (20%), Positives = 97/258 (37%), Gaps = 8/258 (3%)

Query: 445 IEFIDLSNNSLSG--PIPECLVDSITLIWLDLHLN-SFNGSIPQISANGSGLVNLILNDN 501
           +  +DLS  +L    PIP  L +   L +L +    +  G IP   A  + L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 502 QFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI----GN 557
              G +P  L+    L  L+ + N +  T P  ++ LP L+ +    N+  G I    G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 558 TDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFF 617
                    +    L+                 +       ++V         + + A  
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 618 TLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNL 677
           +L     ++ +      +D  +NR  G +P+ + +L  L  LN S N+L G IP    NL
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 678 TVLESLDLSSNRLVGQIP 695
              +    ++N+ +   P
Sbjct: 291 QRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.8 bits (169), Expect = 2e-13
 Identities = 68/269 (25%), Positives = 100/269 (37%), Gaps = 9/269 (3%)

Query: 3   TGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNL 62
           T +V  LDLS   L    P  SSL  LPYL  L +G  +     I     +L  L +L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 63  SNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTI 122
           +++  SG IP  +SQ+  +++LD S N             I +L  L  +      +S  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGT----LPPSISSLPNLVGITFDGNRISGA 164

Query: 123 VLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQ 182
           + D   +   S L        N +            L  + LS N   G         K 
Sbjct: 165 IPDSYGSF--SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 183 LYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
                    N +            L+ LDL  N++ G LP  L  L+ L +L +S N+L 
Sbjct: 223 -TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 243 GTIPSWLFTVLPYLEVIHLRDNRFTGSIP 271
           G IP      L   +V    +N+     P
Sbjct: 282 GEIPQ--GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 58/269 (21%), Positives = 102/269 (37%), Gaps = 11/269 (4%)

Query: 49  SGFGRLISLTHLNLSNSYFSG--QIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENL 106
               +   + +L+LS         IPS ++ L  +  L +   + +          I  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL---VGPIPPAIAKL 100

Query: 107 TKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSY 166
           T+L  L ++  ++S         +   +L  L  +   L G +P S+++LP L  ++   
Sbjct: 101 TQLHYLYITHTNVSGA--IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 167 NHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLK 226
           N  SG IP       +L+       N + G          L+F+DLS N L G       
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 227 GLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLS 286
             +N   +       +         +   L  + LR+NR  G++P  + +L  L S+ +S
Sbjct: 219 SDKNTQKIH--LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 287 SNNLSGHIELCMFARLKNLQYLYLSQNRL 315
            NNL G I       L+       + N+ 
Sbjct: 277 FNNLCGEI--PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 2e-11
 Identities = 44/265 (16%), Positives = 78/265 (29%), Gaps = 8/265 (3%)

Query: 251 TVLPYLEVIHLRDNRFTG--SIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL 308
           T    +  + L          IPS++  L  L  + +   N          A+L  L YL
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 309 YLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP 368
           Y++   +S       +     +             P  + S   L  +    N+I G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 369 NWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISN 428
           + +    K         +     +              S  +      +       +   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 429 NKLTGEIPCSFCTAA---PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQ 485
           +     +            +  +DL NN + G +P+ L     L  L++  N+  G IPQ
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 486 ISANGSGLVNLILNDNQF--EGPLP 508
              N          +N+     PLP
Sbjct: 287 GG-NLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 5e-09
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 157 PQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQ 216
             L  L L  N   G +P  L+ LK L+ LN+  NNL G IP    NL +      + N+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

Query: 217 -LTGR-LPSC 224
            L G  LP+C
Sbjct: 303 CLCGSPLPAC 312

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (144), Expect = 4e-10
 Identities = 57/445 (12%), Positives = 102/445 (22%), Gaps = 26/445 (5%)

Query: 159 LTSLSLSYNHFS-GHIPSFLSHLKQLYYLNLEQNNL----VGGIPDSFVNLTQLSFLDLS 213
           + SL +     S       L  L+Q   + L+   L       I  +      L+ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 214 WNQLTGRLPSCL-----KGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTG 268
            N+L      C+          +  L L    L G     L + L  L  +         
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 269 SIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFP 328
              + +  L                    + A         L          +  N    
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 329 KLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNF 388
             +++       S         +       +   + G + +           N  L D  
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVG 242

Query: 389 LTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFI 448
           + ++    L     L        G        L     +   L                +
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 449 DLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLP 508
                   G   E L             +  +            + N  L D        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 509 QSLANCSRLQVLNVANNRIDDT----FPHWLAQLPELLVLILRSNKFYGLIGNTDARVIF 564
                 S L+VL +A+  + D+        L     L  L L +N     +G+     + 
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC----LGDAGILQLV 418

Query: 565 -------PKLRILDLSRNEFTGVLP 582
                    L  L L    ++  + 
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 1e-09
 Identities = 51/442 (11%), Positives = 110/442 (24%), Gaps = 25/442 (5%)

Query: 304 NLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISE-----FPDFLRSQDRLEWLQL 358
           ++Q L +    LS     +      +   + L  C ++E         LR    L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 359 SENKIYGRIPNWFWDIGKD---TLYNLNLSDNFLTDVEQVPLKNLR---FLDLRSNLLQG 412
             N++     +      +     +  L+L +  LT      L +           +L   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 413 SVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWL 472
            +     +L+   + + +   E       +      +   + L        +        
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 473 DLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQS--LANCSRLQVLNVANNRIDDT 530
           +  +      +         L                    +  S  ++   +N   D  
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 531 FPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLK 590
                  L      +     +   I       +   LR  +  +                
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 591 AMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVV 650
                            +   + +A  +     +  N   + L I  +     G      
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 651 GKL---NLLKMLNFSHNHLTGR----IPSSLRNLTVLESLDLSSNRLVGQIPTQLTS--- 700
           G     ++L++L  +   ++      + ++L     L  LDLS+N L      QL     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 701 --LNFLSKLNLSHNQLEGPIPQ 720
                L +L L        +  
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 1e-07
 Identities = 65/463 (14%), Positives = 115/463 (24%), Gaps = 28/463 (6%)

Query: 132 SSSLSYLHLTGCNLI-GPIPASLANLPQLTSLSLSYNHFSG----HIPSFLSHLKQLYYL 186
           S  +  L +    L        L  L Q   + L     +      I S L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 187 NLEQNNLVGGIPDSF-----VNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL 241
           NL  N L                 ++  L L    LTG          +     L     
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV----LSSTLRTLPTLQE 116

Query: 242 NGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFAR 301
                + L      L    L D +         +  ++  S    ++ L    +      
Sbjct: 117 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 302 LKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSEN 361
             N       +                KL   G+++ N  +    + S+  L  L L  N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 362 KIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRL 421
           K+                  L     +   +      +L  +      L+   +      
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 422 IFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNG 481
              +    +   E  C   +         +               +  + +  +     G
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 482 SIPQISA---NGSGLVNLILNDNQFEG----PLPQSLANCSRLQVLNVANNRIDDTFPHW 534
                      GS L  L L D          L  +L     L+ L+++NN + D     
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 535 LAQLPE-----LLVLILRSNKFYGLIGN--TDARVIFPKLRIL 570
           L +        L  L+L    +   + +         P LR++
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 5e-07
 Identities = 49/449 (10%), Positives = 108/449 (24%), Gaps = 23/449 (5%)

Query: 32  LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQ----IPSEISQLSKMLSLDLS 87
           +++L++   + + +  +     L     + L +   +      I S +     +  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 88  KND-EVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLI 146
            N+        V +GL     K+++L L    ++        + L +  +   L   + +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 147 GPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQ 206
                      QL    L                          + L        + ++ 
Sbjct: 124 LGD-----AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 178

Query: 207 LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
               +     L   L      L  L        S N      +      L  + L  N+ 
Sbjct: 179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238

Query: 267 TGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANST 326
                + +   +   S RL +  +                       +       +    
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 327 FPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD 386
             + L          +                S          +  ++        +   
Sbjct: 299 GAR-LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 357

Query: 387 NFLTDVEQVPLKNLRFLDLRSNLLQ-------GSVMVLPPRLIFFSISNNKLTGEIPCSF 439
             L      P   LR L L    +         + ++    L    +SNN L        
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 440 CTA-----APIEFIDLSNNSLSGPIPECL 463
             +       +E + L +   S  + + L
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 5e-06
 Identities = 53/446 (11%), Positives = 116/446 (26%), Gaps = 20/446 (4%)

Query: 83  SLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSS--SLSYLHL 140
           SLD+       +    W  L+  L + + + L +  ++        + L    +L+ L+L
Sbjct: 6   SLDIQCE---ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 141 TGCNLIGPIPASLA-----NLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVG 195
               L       +         ++  LSL     +G     LS   +      E +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 196 GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
            + D+ + L     LD        +L  C     +   L     +        +      
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
              + +         P  +  L   +    S N       +   A L+ L         +
Sbjct: 183 EAGVRVLCQGLK-DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 316 SVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIG 375
            +             L+                    L   +  +               
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 376 KDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEI 435
                 L       +   +            S++L  +  +L  ++    + +  +    
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 436 PCSFCTAAPIEFIDLSNNSLSG----PIPECLVDSITLIWLDLHLNSFNGSIPQ-----I 486
                  + +  + L++  +S      +   L+ + +L  LDL  N    +        +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 487 SANGSGLVNLILNDNQFEGPLPQSLA 512
              G  L  L+L D  +   +   L 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 20/148 (13%), Positives = 39/148 (26%), Gaps = 10/148 (6%)

Query: 635 IDFSSNRF-EGQIPEVVGKLNLLKMLNFSHNHLTGR----IPSSLRNLTVLESLDLSSNR 689
           +D       + +  E++  L   +++      LT      I S+LR    L  L+L SN 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 690 LVGQIPTQLTSL-----NFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLS 744
           L       +          + KL+L +  L G              +             
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126

Query: 745 DKCSNIDDAQEPAPRDTWSWFDWKVAMM 772
                + +                 ++ 
Sbjct: 127 AGLQLLCEGLLDPQCRLEKLQLEYCSLS 154

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 201 FVNLTQLSFLDLSWNQLTGR----LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP-- 254
               + L  L L+   ++      L + L    +L  L LS N L       L   +   
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 255 --YLEVIHLRDNRFTGSIPSTIFELV-NLTSIRLSS 287
              LE + L D  ++  +   +  L  +  S+R+ S
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 30  PYLETLNLGSNDFNS---SLISSGFGRLISLTHLNLSNSYFSGQIPSEISQ-----LSKM 81
             L  L L   D +    S +++      SL  L+LSN+        ++ +        +
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 82  LSLDLSKNDEVRIESPVWKGLIENLTKLKEL 112
             L L             + L ++   L+ +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 5e-10
 Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 10/187 (5%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
             T L+LS +       + +   +++  L+L + +  +++             L  L   
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT---------LPVLGTL 82

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS 175
           ++  + +     L     +L+ L ++   L      +L  L +L  L L  N      P 
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLR 235
            L+   +L  L+L  NNL          L  L  L L  N L   +P    G   L    
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 236 LSGNSLN 242
           L GN   
Sbjct: 202 LHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 8e-10
 Identities = 41/246 (16%), Positives = 71/246 (28%), Gaps = 10/246 (4%)

Query: 513 NCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDL 572
             +    +N     +    P  L    +  +L L  N  Y     T     + +L  L+L
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMP--YTRLTQLNL 62

Query: 573 SRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGI----DVEMNI 628
            R E T +        L  +    N                    +   +       +  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 629 LSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSN 688
           L     +    N  +   P ++     L+ L+ ++N+LT      L  L  L++L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 689 RLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCS 748
            L   IP      + L    L  N               Q ++    +   G  +    S
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTS 241

Query: 749 NIDDAQ 754
           N+   Q
Sbjct: 242 NVASVQ 247

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 7e-09
 Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 28/220 (12%)

Query: 103 IENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSL 162
           +  +    E+   + +++ +       +L    + LHL+   L     A+L    +LT L
Sbjct: 6   VSKVASHLEVNCDKRNLTALP-----PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 163 SLS-YNHFSGHIPSFLSHLKQLYYLNLEQ--------------------NNLVGGIPDSF 201
           +L         +   L  L  L   + +                     N L      + 
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 202 VNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHL 261
             L +L  L L  N+L    P  L     L  L L+ N+L           L  L+ + L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-LNGLENLDTLLL 179

Query: 262 RDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFAR 301
           ++N    +IP   F    L    L  N    + E+  F R
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRR 218

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 41/227 (18%), Positives = 62/227 (27%), Gaps = 26/227 (11%)

Query: 325 STFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNL 384
           S     L++     N++  P  L        L LSEN +Y                    
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLM------------ 52

Query: 385 SDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAP 444
                      P   L  L+L    L    +     ++     ++     +P    T   
Sbjct: 53  -----------PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA 101

Query: 445 IEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFE 504
           +  +D+S N L+      L     L  L L  N      P +      L  L L +N   
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161

Query: 505 GPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
                 L     L  L +  N +  T P        L    L  N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 37/222 (16%), Positives = 62/222 (27%), Gaps = 28/222 (12%)

Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           ++      T ++P  + +  + T + LS N L     L        L  L L +      
Sbjct: 15  VNCDKRNLT-ALPPDLPK--DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAE---- 66

Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT 378
                                  +    L     L+        +             D 
Sbjct: 67  -------------------LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 379 LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCS 438
            +N   S           L+ L         L   ++   P+L   S++NN LT      
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 439 FCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFN 480
                 ++ + L  NSL   IP+    S  L +  LH N + 
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 8e-06
 Identities = 46/223 (20%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 178 SHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLS 237
           S +     +N ++ NL   +P         + L LS N L     + L     L  L L 
Sbjct: 7   SKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 238 GNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELC 297
              L          VL  L++ H +         +     V   S    +      + L 
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-----SLPLG 118

Query: 298 MFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQ 357
               L  LQ LYL  N L          T         +          L   + L+ L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 358 LSENKIYGRIPNWFWDIGKDTLYNLNLSDN-FLTDVEQVPLKN 399
           L EN +Y  IP  F+      L    L  N +L + E +  + 
Sbjct: 179 LQENSLY-TIPKGFFGSHL--LPFAFLHGNPWLCNCEILYFRR 218

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 42/266 (15%), Positives = 94/266 (35%), Gaps = 15/266 (5%)

Query: 448 IDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEG-P 506
           +DL+  +L   +   L+ S  +I      +  +  + +  +    + ++ L+++  E   
Sbjct: 5   LDLTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPK 566
           L   L+ CS+LQ L++   R+ D   + LA+   L+ L L     +             +
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 567 LRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEM 626
           L  L+L          +  F   +  ++ +     +         Y           +  
Sbjct: 123 LDELNL----------SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172

Query: 627 NILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSH-NHLTGRIPSSLRNLTVLESLDL 685
              ++  +    S   +    +   +LN L+ L+ S    +       L  +  L++L +
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232

Query: 686 SSNRLVGQIPTQLTSLNFLSKLNLSH 711
                 G +     +L  L ++N SH
Sbjct: 233 FGIVPDGTLQLLKEALPHL-QINCSH 257

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 11/247 (4%)

Query: 131 LSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSG-HIPSFLSHLKQLYYLNLE 189
           LS  +         +  P+    +   ++  + LS +      +   LS   +L  L+LE
Sbjct: 21  LSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79

Query: 190 QNNLVGGIPDSFVNLTQLSFLDLSW--NQLTGRLPSCLKGLRNLVTL-----RLSGNSLN 242
              L   I ++    + L  L+LS         L + L     L  L             
Sbjct: 80  GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139

Query: 243 GTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARL 302
               + +   +  L +   R N     + + +    NL  + LS + +  +     F +L
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199

Query: 303 KNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENK 362
             LQ+L LS+    +   L      P L  L +           L+    L  LQ++ + 
Sbjct: 200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA--LPHLQINCSH 257

Query: 363 IYGRIPN 369
                  
Sbjct: 258 FTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 31/238 (13%), Positives = 72/238 (30%), Gaps = 17/238 (7%)

Query: 83  SLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTG 142
           +LDL+  +       +   +   L     +       S +    +       + ++ L+ 
Sbjct: 4   TLDLTGKN-------LHPDVTGRLLSQGVIAFR-CPRSFMDQPLAEHFSPFRVQHMDLSN 55

Query: 143 CNL-IGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLV--GGIPD 199
             + +  +   L+   +L +LSL     S  I + L+    L  LNL   +      +  
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115

Query: 200 SFVNLTQLSFLDL------SWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVL 253
              + ++L  L+L      +   +   +    + +  L       N     + + +    
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 254 PYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLS 311
             + +                F+L  L  + LS         L     +  L+ L + 
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 52/272 (19%), Positives = 92/272 (33%), Gaps = 16/272 (5%)

Query: 9   LDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFS 68
           LDL+   LH  +        L     +             +       + H++LSNS   
Sbjct: 5   LDLTGKNLHPDVTGR-----LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 69  G-QIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKL---KELVLSEVDMSTIVL 124
              +   +SQ SK+ +L L     +            NL +L        SE  + T++ 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 125 DYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLY 184
             S  +  +       T  ++   +      + QL       N     + + +     L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 185 YLNLEQNNLVGG-IPDSFVNLTQLSFLDLSW-NQLTGRLPSCLKGLRNLVTLRLSGNSLN 242
           +L+L  + ++       F  L  L  L LS    +       L  +  L TL++ G   +
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 243 GTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTI 274
           GT+   L   LP+L++     + FT     TI
Sbjct: 239 GTLQ-LLKEALPHLQI---NCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 41/305 (13%), Positives = 88/305 (28%), Gaps = 47/305 (15%)

Query: 281 TSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNI 340
            ++ L+  NL   +      RL +   +     R  ++  L  + +  ++  + LS   I
Sbjct: 3   QTLDLTGKNLHPDV----TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 341 SE--FPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLK 398
                   L    +L+ L L   ++   I N                   L  +      
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN------------LVRLNLSGCS 106

Query: 399 NLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
                 L++ L   S +        F  +   +   +     T   +       N     
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 459 IPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQ 518
           +   +     L+ LDL  +                          +    Q     + LQ
Sbjct: 167 LSTLVRRCPNLVHLDLSDS-----------------------VMLKNDCFQEFFQLNYLQ 203

Query: 519 VLNVAN-NRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEF 577
            L+++    I       L ++P L  L +      G++ +   +++   L  L ++ + F
Sbjct: 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVF-----GIVPDGTLQLLKEALPHLQINCSHF 258

Query: 578 TGVLP 582
           T +  
Sbjct: 259 TTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 29/281 (10%), Positives = 60/281 (21%), Gaps = 36/281 (12%)

Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
           L        +   +     + + R   + +   +          +Q++ LS + + V+T 
Sbjct: 7   LTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVSTL 63

Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLY 380
               S   KL  L L    +S+    + +  +   L             +       +  
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 381 NLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFC 440
            L+  +                       +      +    +     N + +        
Sbjct: 122 RLDELNLSWCFD--------FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173

Query: 441 TAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILND 500
               +      +  L     +       L  L L                          
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS-----------------------RC 210

Query: 501 NQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL 541
                     L     L+ L V     D T       LP L
Sbjct: 211 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 251

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 38/126 (30%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 137 YLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG 196
            LHL   +L   +   L  L  +T L LS+N      P+  + L+ L  L    N     
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNA--LE 56

Query: 197 IPDSFVNLTQLSFLDLSWNQLTG-RLPSCLKGLRNLVTLRLSGNSLNG--TIPSWLFTVL 253
             D   NL +L  L L  N+L        L     LV L L GNSL     I   L  +L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 254 PYLEVI 259
           P +  I
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 29/126 (23%), Positives = 41/126 (32%), Gaps = 8/126 (6%)

Query: 210 LDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS 269
           L L+   LT      L+ L  +  L LS N L    P+     L  LEV+   DN     
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALE-- 56

Query: 270 IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDAN--STF 327
               +  L  L  + L +N L     +        L  L L  N L     +        
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 328 PKLLKL 333
           P +  +
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 2/117 (1%)

Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFC 440
           L+L+   LT +  +  L  +  LDL  N L+     L        +  +    E      
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 441 TAAPIEFIDLSNNSL-SGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNL 496
               ++ + L NN L      + LV    L+ L+L  NS              L ++
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 306 QYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYG 365
           + L+L+   L   T L        +  L LS   +   P  L +   LE LQ S+N +  
Sbjct: 1   RVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 366 RIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP----LKNLRFLDLRSNLLQG 412
                     +     L L +N L     +        L  L+L+ N L  
Sbjct: 58  VDGVANLPRLQ----ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 9/125 (7%)

Query: 425 SISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIP 484
            +++  LT  + C       +  +DLS+N L    P  L     L  L    N+      
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG 60

Query: 485 QISANGSGLVNLILNDNQFEG-PLPQSLANCSRLQVLNVANNRI---DDTFPHWLAQLPE 540
             +        L+L +N+ +     Q L +C RL +LN+  N +   +         LP 
Sbjct: 61  VANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 541 LLVLI 545
           +  ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 233 TLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSG 292
            L L+   L  T+   L   L  +  + L  NR     P+    L  L  + +   + + 
Sbjct: 2   VLHLAHKDL--TVLCHLEQ-LLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNA 54

Query: 293 HIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDF 346
              +   A L  LQ L L  NRL  +  +    + P+L+ L L   ++ +    
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 9/120 (7%)

Query: 285 LSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFP 344
           L+  +L+    LC   +L  + +L LS NRL       A       L++  ++ N  E  
Sbjct: 5   LAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPALAALRC---LEVLQASDNALENV 58

Query: 345 DFLRSQDRLEWLQLSENKI-YGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFL 403
           D + +  RL+ L L  N++             +  L  LNL  N L   E +  +    L
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPR--LVLLNLQGNSLCQEEGIQERLAEML 116

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.0 bits (123), Expect = 7e-08
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 13/219 (5%)

Query: 493 LVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFY 552
            + +    +     + Q  A+   +  L+     +       +  L  L+ L L+ N+  
Sbjct: 21  AIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT 76

Query: 553 GLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRY 612
            L    +                     +           +  ++T    V  +      
Sbjct: 77  DLAPLKN-----LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 613 YSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPS 672
              +  L  I     +  +  +   S    +      +  L+ L  L    N ++   P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 673 SLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSH 711
            L +L  L  + L +N++    P  L + + L  + L++
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 38/221 (17%), Positives = 67/221 (30%), Gaps = 24/221 (10%)

Query: 104 ENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLS 163
             L    ++   + +++  V   +  +L   ++ L   G  +       +  L  L  L 
Sbjct: 16  PALANAIKIAAGKSNVTDTV---TQADLDG-ITTLSAFGTGVTTI--EGVQYLNNLIGLE 69

Query: 164 LSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQ-------LSFLDLSWNQ 216
           L  N  +   P           L+      V  I       T             L+   
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 217 LTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY------LEVIHLRDNRFTGSI 270
               L   L  + N+  L    N    +I +   + L        L  +   DN+ +   
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 271 PSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLS 311
           P  +  L NL  + L +N +S    L   A   NL  + L+
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSPL---ANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 33/212 (15%), Positives = 56/212 (26%), Gaps = 27/212 (12%)

Query: 527 IDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYF 586
           I+  FP     L   + +    +     +   D       +  L       T +   +Y 
Sbjct: 9   INVIFP--DPALANAIKIAAGKSNVTDTVTQAD----LDGITTLSAFGTGVTTIEGVQYL 62

Query: 587 QNLKAMMRGSNT-------------------STVQVQYMHRFGRYYSAFFTLKGIDVEMN 627
            NL  +    N                               G        L    +   
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 628 ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSS 687
                L           QI  +     L  +   S  +      + L NL+ L +L    
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 688 NRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIP 719
           N++    P  L SL  L +++L +NQ+    P
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 23/234 (9%)

Query: 18  GSIPSNS---SLFLLPYLET---LNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQI 71
           GSI   +    +F  P L     +  G ++   ++  +    L  +T L+   +  +   
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTTI- 56

Query: 72  PSEISQLSKMLSLDLSKN---DEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSL 128
              +  L+ ++ L+L  N   D   +++      +E      + V +   + +I      
Sbjct: 57  -EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115

Query: 129 TNLSSSLSYLHLTGC-----NLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQL 183
           +   + ++ L            +  I              LS  +      + L++L +L
Sbjct: 116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL 175

Query: 184 YYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLS 237
             L  + N +    P    +L  L  + L  NQ++   P  L    NL  + L+
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 7e-08
 Identities = 60/325 (18%), Positives = 108/325 (33%), Gaps = 19/325 (5%)

Query: 398 KNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSG 457
           +    L+L +  L  S+  LPP L     S N LT E+P    +   ++ + + NN+L  
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQS---LKSLLVDNNNL-- 90

Query: 458 PIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRL 517
              + L D   L+      N+    +P++  +    +  + N++  + P           
Sbjct: 91  ---KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 518 QVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEF 577
               +         P   A   +   L    +    L        I  +L  L       
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 578 TGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDF 637
           T        + L  +        V+  Y+        +   L   +   + LS      +
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 638 SSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQ 697
             N    +I  +      L+ LN S+N L   +P+    L   E L  S N L  ++P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPEL 322

Query: 698 LTSLNFLSKLNLSHNQLEGPIPQGP 722
             +L    +L++ +N L    P  P
Sbjct: 323 PQNL---KQLHVEYNPLRE-FPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 139 HLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIP 198
                     I +     P L  L++S N     +P+    L+    L    N+L   +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL-AEVP 320

Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNL 231
           +   NL Q   L + +N L    P   + + +L
Sbjct: 321 ELPQNLKQ---LHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 8e-06
 Identities = 50/332 (15%), Positives = 108/332 (32%), Gaps = 20/332 (6%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
               L L+N   S  +P     L    SL  S N    +           +       LS
Sbjct: 39  QAHELELNNLGLS-SLPELPPHLE---SLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS 175
           ++      L  S   L       + +   +I     SL  LP L          +  +  
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 176 FLS--HLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVT 233
                +L  L  +  + N+L           + ++  ++       +    L  +     
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 234 LRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGH 293
           L  +   L  ++ +         ++  L  +     +   IF  ++     L   N S +
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 294 IELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRL 353
               +     +L+ L +S N+L      +  +  P+L +L  S  +++E P+  ++   L
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLAEVPELPQN---L 326

Query: 354 EWLQLSENKIYGRIPNWFWDIGKDTLYNLNLS 385
           + L +  N +    P+       +++ +L ++
Sbjct: 327 KQLHVEYNPLRE-FPDIP-----ESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 47/341 (13%), Positives = 92/341 (26%), Gaps = 25/341 (7%)

Query: 181 KQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNS 240
           +Q + L L    L   +P+   +L  L     S N LT  LP   + L++L+    +  +
Sbjct: 38  RQAHELELNNLGL-SSLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 241 LNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFA 300
           L+   P                             +  +   I    NN    +     +
Sbjct: 93  LSDLPPLL-----------EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 141

Query: 301 RLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSE 360
                      +    +       + +     L             +   + LE L   +
Sbjct: 142 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ 201

Query: 361 NKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPR 420
           N  +        ++ K         +        +         L    +  ++      
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 421 LIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFN 480
           L       N  + EI         +E +++SNN L   +P        L  L    N   
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHLA 317

Query: 481 GSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLN 521
             +P++  N   L  L +  N      P    +   L++ +
Sbjct: 318 -EVPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 53/332 (15%), Positives = 93/332 (28%), Gaps = 23/332 (6%)

Query: 32  LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDE 91
              L L +    SSL          L  L  S +  + ++P     L  +L  + +    
Sbjct: 40  AHELELNNLGL-SSLPEL----PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 92  VRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPA 151
             +   +    + N    K   L       I+   + +          L           
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 152 SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLD 211
            L  L  L  L+  Y   +         L     +             +   LT +   +
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 212 LSWNQLTGRLPSCLKGLRNLV----TLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267
                L    PS                L  +     +   +F+ L  L       N  +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 268 GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTF 327
             I S      +L  + +S+N L       + A    L+ L  S N L+     +     
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLA-----EVPELP 323

Query: 328 PKLLKLGLSACNISEFPDFLRSQDRLEWLQLS 359
             L +L +    + EFPD   S   +E L+++
Sbjct: 324 QNLKQLHVEYNPLREFPDIPES---VEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 52/318 (16%), Positives = 77/318 (24%), Gaps = 16/318 (5%)

Query: 131 LSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQ 190
           L      L L    L   +P      P L SL  S N  +  +P     LK L   N   
Sbjct: 36  LDRQAHELELNNLGL-SSLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNL 90

Query: 191 NNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLF 250
             L    P         + L+             +    N +            I +   
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 251 TVLPYLEVIHLRDNR-FTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLY 309
            +    E+ +L           S         S+       +   EL     L  L  +Y
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 310 L------SQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKI 363
                  +   L  + +              L                  E         
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 364 YGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIF 423
                         +L  LN+S+N L ++  +    L  L    N L   V  LP  L  
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIELPAL-PPRLERLIASFNHLA-EVPELPQNLKQ 328

Query: 424 FSISNNKLTG--EIPCSF 439
             +  N L    +IP S 
Sbjct: 329 LHVEYNPLREFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 52/361 (14%), Positives = 95/361 (26%), Gaps = 52/361 (14%)

Query: 220 RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVN 279
           RL  CL   R    L L+   L+ ++P       P+LE +    N  T  +P       +
Sbjct: 31  RLRDCLD--RQAHELELNNLGLS-SLPELP----PHLESLVASCNSLT-ELPELPQ---S 79

Query: 280 LTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACN 339
           L S+ + +NNL     L     L     +  +Q       +  +      +    L    
Sbjct: 80  LKSLLVDNNNLKA---LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 136

Query: 340 ISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKN 399
                    +    +  +L E +    +   + D                       L+ 
Sbjct: 137 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE 196

Query: 400 LRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPI 459
           L  L     L          + +     + +              +       +      
Sbjct: 197 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD----VS 252

Query: 460 PECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQV 519
                    L     +LN+ +  I  +      L  L +++N+    LP       RL+ 
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP---PRLER 308

Query: 520 LNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTG 579
           L  + N         LA++PEL                         L+ L +  N    
Sbjct: 309 LIASFNH--------LAEVPELP----------------------QNLKQLHVEYNPLRE 338

Query: 580 V 580
            
Sbjct: 339 F 339

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 6/163 (3%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASL-ANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187
            ++    + L L    L       L   LP L  L L  N  +G  P+       +  L 
Sbjct: 25  RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84

Query: 188 LEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
           L +N +       F+ L QL  L+L  NQ++  +P   + L +L +L L+ N  N     
Sbjct: 85  LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144

Query: 248 WLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNL 290
             F    +L    L         PS   ++ ++    L  +  
Sbjct: 145 AWF--AEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLS 115
             T L L+++         +      L     K +++    P       +     + +  
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH----IQELQL 85

Query: 116 EVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPS 175
             +    + +     L   L  L+L    +   +P S  +L  LTSL+   ++       
Sbjct: 86  GENKIKEISNKMFLGLHQ-LKTLNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCH 143

Query: 176 FLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLT 218
                + L   +L       G P     +  +   DL  ++  
Sbjct: 144 LAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 3/174 (1%)

Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
           +          IP  I    + T + L+ N L       +F RL +L  L L +N+L+  
Sbjct: 13  VDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT 378
                                            +L+ L L +N+I   +P  F  +   T
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 379 LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLT 432
             NL  +            + LR   L     +         +    + +++  
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK 183

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 6e-06
 Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 103 IENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHL-----TGCNLIGPIPASLANLP 157
            E + +LK ++    D S   LD         L   ++        ++   +     N+P
Sbjct: 6   PEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIP 65

Query: 158 QLTSLSLSYNHFSGH--IPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWN 215
           +L SL+LS N       + S +     L  LNL  N L        +   +L  L L  N
Sbjct: 66  ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125

Query: 216 QLTGRLPSCLKGLRNLVTLRLSGNSLNG 243
            L+         +  +         L+G
Sbjct: 126 SLSDTFRDQSTYISAIRERFPKLLRLDG 153

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 34/201 (16%), Positives = 59/201 (29%), Gaps = 11/201 (5%)

Query: 510 SLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRI 569
           S    +     N+    + D       +L  +  +I  ++    + G        P +  
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY----LPNVTK 72

Query: 570 LDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNIL 629
           L L+ N+ T     +   NLK +                         +L+   +     
Sbjct: 73  LFLNGNKLTD---IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 630 SIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNR 689
            + L    S      +I ++     L K+   S           L  LT L++L LS N 
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189

Query: 690 LVGQIPTQLTSLNFLSKLNLS 710
           +       L  L  L  L L 
Sbjct: 190 ISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 19/197 (9%)

Query: 152 SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLD 211
           S     +    +L     +  +    + L  +  +    +++          L  ++ L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 212 LSWNQLTG------------RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
           L+ N+LT                   K         L          + +  +   + + 
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNT 319
            L       +  + I  L  LT +   S   +   ++   A L  LQ LYLS+N +   +
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI---S 191

Query: 320 KLDANSTFPKLLKLGLS 336
            L A +    L  L L 
Sbjct: 192 DLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 24/198 (12%)

Query: 54  LISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELV 113
                  NL     +  +    ++L+ +  +  + +D   ++       I+ L  + +L 
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG------IQYLPNVTKLF 74

Query: 114 LSEVDMSTIVLDYSLTNLSSSLS-------------YLHLTGCNLIGPIPASLANLPQLT 160
           L+   ++ I    +L NL                     L   +L     + +  L  L 
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 161 SLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGR 220
            L   Y   +      +            ++N +  I      LT+L  L LS N ++  
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD- 192

Query: 221 LPSCLKGLRNLVTLRLSG 238
               L GL+NL  L L  
Sbjct: 193 -LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 18/198 (9%)

Query: 367 IPNWFWDIGKDTLYNLNLSDNFLTD-VEQVPLKNLRFLDLRSNLLQGSVMV-LPPRLIFF 424
           I   F D         NL    +TD V Q  L ++  +   ++ ++    +   P +   
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73

Query: 425 SISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIP 484
            ++ NKLT   P +        F+D +       + +        +  +   +       
Sbjct: 74  FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 485 QISANGSGLVNLILNDNQFEGPLPQS--------------LANCSRLQVLNVANNRIDDT 530
               +     N I +                         LA  ++LQ L ++ N I D 
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD- 192

Query: 531 FPHWLAQLPELLVLILRS 548
               LA L  L VL L S
Sbjct: 193 -LRALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 39/332 (11%), Positives = 87/332 (26%), Gaps = 21/332 (6%)

Query: 421 LIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP----IPECLVDSITLIWLDLHL 476
           L   +I+       +         ++ I LS N++       + E +     L   +   
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 477 NSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHW-L 535
                   +I      L+  +L   +         A     Q   +          H  L
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 536 AQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRG 595
                      +  +    +         P LR +   RN         + +  ++    
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 596 SNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNL 655
                      +           L+G+     +  + L  +  ++     +   +     
Sbjct: 189 HTVK----MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 656 LKMLNFSHNHLTGRIPSSLRN------LTVLESLDLSSNRLVGQIPTQLTS-----LNFL 704
           L+ L  +   L+ R  +++ +         L++L L  N +       L +     +  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 705 SKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNL 736
             L L+ N+         +     S    G L
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 336

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 8e-05
 Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 5/123 (4%)

Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRL----VGQIPTQLTSLNFLSKLNLSH 711
           LK+   +       + + L     ++ + LS N +       +   + S   L     S 
Sbjct: 10  LKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 712 NQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQEPAPRDTWSWFDWKVAM 771
                   + P+       + +    L    LSD        +      +       + +
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 772 MGY 774
              
Sbjct: 129 HNN 131

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 44/336 (13%), Positives = 79/336 (23%), Gaps = 38/336 (11%)

Query: 132 SSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSG----HIPSFLSHLKQLYYLN 187
             SL    +T       + A L     +  + LS N         +   ++  K L    
Sbjct: 7   GKSLKLDAIT-TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 188 LEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
                                 +     +    L   L     L T+RLS N+   T   
Sbjct: 66  FSDI--------------FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 111

Query: 248 WLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY 307
            L   L     +        G  P    ++         +        L      +N   
Sbjct: 112 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 171

Query: 308 LYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRI 367
               +             T   +              + L     L+ L L +N      
Sbjct: 172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 231

Query: 368 PNWFWD--IGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFS 425
            +           L  L L+D  L+      +  +       N            L    
Sbjct: 232 SSALAIALKSWPNLRELGLNDCLLSARGAAAV--VDAFSKLEN----------IGLQTLR 279

Query: 426 ISNNKLTGEIPCSFCTAAP-----IEFIDLSNNSLS 456
           +  N++  +   +  T        + F++L+ N  S
Sbjct: 280 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 38/310 (12%), Positives = 95/310 (30%), Gaps = 29/310 (9%)

Query: 32  LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQ----IPSEISQLSKMLSLDLS 87
           L+   + + D  S  + +      S+  + LS +    +    +   I+    +   + S
Sbjct: 10  LKLDAITTEDEKS--VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 88  KNDEVRIES---PVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCN 144
                R++       + L++ L K  +L    +  +          +     +  L    
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 145 LIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNL 204
           L               + +L     +    +       +   N  +N  +     +F + 
Sbjct: 128 LHNNGLGP--QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 205 TQLSFLDLSWNQLTGRLPSC--------LKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
             L  + +  N +                + L+ L     +   L  +  +      P L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 257 EVIHLRDNRFTGSIPSTIFE------LVNLTSIRLSSNNLSG----HIELCMFARLKNLQ 306
             + L D   +    + + +       + L ++RL  N +       ++  +  ++ +L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 307 YLYLSQNRLS 316
           +L L+ NR S
Sbjct: 306 FLELNGNRFS 315

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 173 IPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLV 232
              + + ++    L+L    +   I +    L Q   +D S N++          LR L 
Sbjct: 11  AAQYTNAVR-DRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLK 66

Query: 233 TLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSG 292
           TL ++ N +          +    E+I   ++         +  L +LT + +  N ++ 
Sbjct: 67  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126

Query: 293 --HIELCMFARLKNLQYL 308
             H  L +  ++  ++ L
Sbjct: 127 KKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 7/136 (5%)

Query: 127 SLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYL 186
             TN       L L G   I  I    A L Q  ++  S N            L++L  L
Sbjct: 13  QYTNAVR-DRELDLRG-YKIPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 68

Query: 187 NLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTG-RLPSCLKGLRNLVTLRLSGNSLNGTI 245
            +  N +          L  L+ L L+ N L        L  L++L  L +  N +    
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 246 PSWLFTV--LPYLEVI 259
              L+ +  +P + V+
Sbjct: 129 HYRLYVIYKVPQVRVL 144

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 10/229 (4%)

Query: 19  SIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQL 78
            IPS+    L      L          +    F     L  + +S +     I +++   
Sbjct: 22  EIPSD----LPRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 76

Query: 79  SKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYL 138
              L     + ++      +     +NL  L+ L++S   +  +   + + +L   L  +
Sbjct: 77  LPKLHEI--RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134

Query: 139 HLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIP 198
                       + +    +   L L+ N          +  +       + NNL     
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194

Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPS 247
           D F   +    LD+S  ++       L+ L+ L             +P+
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 31/218 (14%), Positives = 68/218 (31%), Gaps = 8/218 (3%)

Query: 56  SLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVR-IESPVWKGLIENLTKLKELVL 114
           +   L    +          S    +  +++S+ND +  IE+ V+  L +      E   
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 115 SEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIP 174
           + + ++              +S   +     +  I +    L  +     + N  +    
Sbjct: 90  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD---NINIHTIERN 146

Query: 175 SFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTL 234
           SF+    +   L L +N +      +F             N L         G    V L
Sbjct: 147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206

Query: 235 RLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPS 272
            +S   ++ ++PS+    L  L      + +    +P+
Sbjct: 207 DISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 26/241 (10%), Positives = 67/241 (27%), Gaps = 15/241 (6%)

Query: 458 PIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRL 517
               C   +   +  +  +      +P         + L     +       + +    L
Sbjct: 2   HHRICHCSNRVFLCQESKVTEIPSDLP------RNAIELRFVLTKLRVIQKGAFSGFGDL 55

Query: 518 QVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEF 577
           + + ++ N + +     +      L  I        L  N +A    P L+ L +S    
Sbjct: 56  EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI 115

Query: 578 TGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRY--------YSAFFTLKGIDVEMNIL 629
             +       +L+ ++     +                     +     ++ I       
Sbjct: 116 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG 175

Query: 630 SIFLVIDFSSNRFEGQIP-EVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSN 688
           +    ++ S N    ++P +V    +   +L+ S   +       L NL  L +    + 
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

Query: 689 R 689
           +
Sbjct: 236 K 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 43/219 (19%), Positives = 73/219 (33%), Gaps = 7/219 (3%)

Query: 129 TNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNL 188
           ++L  +   L      L      + +    L  + +S N     I + +       +   
Sbjct: 25  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 84

Query: 189 EQ--NNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIP 246
            +  NNL+   P++F NL  L +L +S   +              V L +  N    TI 
Sbjct: 85  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 144

Query: 247 SWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQ 306
              F  L +  VI   +      I +  F    L  + LS NN    +   +F       
Sbjct: 145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 204

Query: 307 YLYLSQNRLSVNTKLDANSTFPKLLKL-GLSACNISEFP 344
            L +S+ R+        +     L KL   S  N+ + P
Sbjct: 205 ILDISRTRIHSLP----SYGLENLKKLRARSTYNLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 18/216 (8%), Positives = 52/216 (24%), Gaps = 11/216 (5%)

Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDA------ 560
           +P  L        L     ++        +   +L  + +  N    +I           
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 561 ---RVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFF 617
              R+      +                  +   +    +   +            +   
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 618 TLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNL 677
                +  + +    +++  + N  +           L ++    +N+L           
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 678 TVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQ 713
           +    LD+S  R+       L +L  L   +  + +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
              +    +         +    NLT + + +     H+EL     L  L+ L + ++  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG- 67

Query: 316 SVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIY-GRIPNWFWDI 374
                 DA    P+L +L LS   +            L+ L LS N ++      W    
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Query: 375 GKDTLYNLNLSDNFLTDVEQVPLKNL 400
            ++ L    + +  L    Q PL ++
Sbjct: 128 EEEGL--GGVPEQKLQCHGQGPLAHM 151

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 18/134 (13%), Positives = 34/134 (25%), Gaps = 24/134 (17%)

Query: 205 TQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN 264
              S L  + +         L G  NL  L +        +       L  L  + +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 265 RFTG-----------------------SIPSTIFELVNLTSIRLSSNNLSGHIELCMFAR 301
                                      S+     + ++L  + LS N L     L    R
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 302 LKNLQYLYLSQNRL 315
            +      + + +L
Sbjct: 127 WEEEGLGGVPEQKL 140

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 36/202 (17%), Positives = 59/202 (29%), Gaps = 26/202 (12%)

Query: 523 ANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLP 582
            +  I+  F      L E +  +L        +  TD      ++  L   R     +  
Sbjct: 4   QDTPINQIFTD--TALAEKMKTVLGKTNVTDTVSQTD----LDQVTTLQADRLGIKSIDG 57

Query: 583 TRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRF 642
             Y  NL  +   +N  T      +            +  D+        L      N  
Sbjct: 58  VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 117

Query: 643 EGQIPEVVGKLNLLKMLNFSHNHLTGRI-------------------PSSLRNLTVLESL 683
              I  +    NL ++   S+                             L NLT LE L
Sbjct: 118 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERL 177

Query: 684 DLSSNRLVG-QIPTQLTSLNFL 704
           D+SSN++    +  +LT+L  L
Sbjct: 178 DISSNKVSDISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	816
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.98
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.97
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.96
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.96
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.96
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.94
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.93
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.93
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.92
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.92
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.89
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.8
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.79
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.75
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.74
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.66
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.66
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.51

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=241.65  Aligned_cols=257  Identities=32%  Similarity=0.518  Sum_probs=164.3

Q ss_pred             CCEEECCCCCCCC--CCCCHHHCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             8947488997999--9980011358887998558-848557783555998964898458825577870257999996998
Q 003488          445 IEFIDLSNNSLSG--PIPECLVDSITLIWLDLHL-NSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLN  521 (816)
Q Consensus       445 L~~L~ls~n~l~~--~~p~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  521 (816)
                      ++.|+++++.+.+  .+|..+.++++|++|++++ |.+.|.+|..+.++++|++|++++|++.+..+..+..+..|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf             88998989988888879847846753352020265433300243114542001102035643443322222011100111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             768967889851114899984998667314223589954236787-8556178873555684688764545331678864
Q 003488          522 VANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPK-LRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTST  600 (816)
Q Consensus       522 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~  600 (816)
                      ++.|.+.+.+|..+.+++.++++++++|.+.+.+|  ..+..+.. ++.+++++|++++..|..+ .             
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip--~~~~~l~~l~~~l~~~~n~l~~~~~~~~-~-------------  195 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPPTF-A-------------  195 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC--GGGGCCCTTCCEEECCSSEEEEECCGGG-G-------------
T ss_pred             CCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC-C-------------
T ss_conf             12245555685122067400000023553356203--1214431123231022464353324332-2-------------


Q ss_pred             CCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             20110023443101279750440012122332089836883544584432177889689735785866688241166877
Q 003488          601 VQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVL  680 (816)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  680 (816)
                                                 .+ ....++++++...+.+|..++.++.++.+++++|.+.+.+| .++.+++|
T Consensus       196 ---------------------------~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L  246 (313)
T d1ogqa_         196 ---------------------------NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNL  246 (313)
T ss_dssp             ---------------------------GC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTC
T ss_pred             ---------------------------CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf             ---------------------------22-22233333343322222222222221112222222222222-22245544


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9574888725355864667867679385746856037999997886564533575699899999999
Q 003488          681 ESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKC  747 (816)
Q Consensus       681 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~~~~~c  747 (816)
                      +.|+|++|+++|.+|..+.++++|++|++++|+++|.+|...++..++...+.||+.+||.|+. .|
T Consensus       247 ~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC-CC
T ss_conf             4444765706660876884799999897958835166898666799897886889500198988-98

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=232.15  Aligned_cols=254  Identities=27%  Similarity=0.414  Sum_probs=219.1

Q ss_pred             CCCEEECCCCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             75178703772344--3333456789989474889-97999998001135888799855884855778355599896489
Q 003488          420 RLIFFSISNNKLTG--EIPCSFCTAAPIEFIDLSN-NSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNL  496 (816)
Q Consensus       420 ~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~-n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  496 (816)
                      +++.|+++++.+.+  .+|..+..+++|+.|++++ |.+.|.+|..+.++.+|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             98899898998888887984784675335202026543330024311454200110203564344332222201110011


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             845882557787025799999699876896788985111489998-4998667314223589954236787855617887
Q 003488          497 ILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPEL-LVLILRSNKFYGLIGNTDARVIFPKLRILDLSRN  575 (816)
Q Consensus       497 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N  575 (816)
                      +++.|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.++++.|.+++..+  ..+..+ ....++++++
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~--~~~~~l-~~~~l~l~~~  207 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP--PTFANL-NLAFVDLSRN  207 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC--GGGGGC-CCSEEECCSS
T ss_pred             CCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC-CCCCCCCCCC
T ss_conf             1122455556851220674000000235533562031214431123231022464353324--332222-2223333334


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCC
Q ss_conf             35556846887645453316788642011002344310127975044001212233208983688354458443217788
Q 003488          576 EFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNL  655 (816)
Q Consensus       576 ~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~  655 (816)
                      ...+.+|..+                                         ..+..++.+++++|.+++.+| .++.++.
T Consensus       208 ~~~~~~~~~~-----------------------------------------~~~~~l~~l~~~~~~l~~~~~-~~~~~~~  245 (313)
T d1ogqa_         208 MLEGDASVLF-----------------------------------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKN  245 (313)
T ss_dssp             EEEECCGGGC-----------------------------------------CTTSCCSEEECCSSEECCBGG-GCCCCTT
T ss_pred             CCCCCCCCCC-----------------------------------------CCCCCCCCCCCCCCCCCCCCC-CCCCCCC
T ss_conf             3322222222-----------------------------------------222221112222222222222-2224554


Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCC-CC
Q ss_conf             9689735785866688241166877957488872535586466786767938574685-6037-99
Q 003488          656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQ-LEGP-IP  719 (816)
Q Consensus       656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g~-ip  719 (816)
                      |+.|+|++|+++|.+|..++++++|+.|||++|+++|.+| .+.++++|+.+++++|+ ++|. +|
T Consensus       246 L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred             CCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf             4444476570666087688479999989795883516689-8666799897886889500198988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=5.7e-44  Score=210.10  Aligned_cols=79  Identities=25%  Similarity=0.351  Sum_probs=54.5

Q ss_pred             CCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             22332089836883544584432177889689735785866688241166877957488872535586466786767938
Q 003488          628 ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKL  707 (816)
Q Consensus       628 ~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  707 (816)
                      .+..++.+++++|++++..  .+..+++|+.|++++|++++ +| .++++++|+.|++++|++++.+|  +.++++|+.|
T Consensus       305 ~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L  378 (384)
T d2omza2         305 NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQL  378 (384)
T ss_dssp             GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred             HHCCCCEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEE
T ss_conf             0024676777788778984--53668988989898998999-74-67089999989897995899800--0039999996


Q ss_pred             ECCCC
Q ss_conf             57468
Q 003488          708 NLSHN  712 (816)
Q Consensus       708 ~ls~N  712 (816)
                      ++++|
T Consensus       379 ~L~~N  383 (384)
T d2omza2         379 GLNDQ  383 (384)
T ss_dssp             ECCCE
T ss_pred             ECCCC
T ss_conf             39789

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=3.3e-41  Score=197.67  Aligned_cols=166  Identities=25%  Similarity=0.335  Sum_probs=93.5

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             88879985588485577835559989648984588255778702579999969987689678898511148999849986
Q 003488          467 ITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLIL  546 (816)
Q Consensus       467 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  546 (816)
                      .+|+.+++++|.+...  ..+..+++|+.+++.+|.+++..  .+..+++|+.|++++|.+.+..+  +..++.++.+.+
T Consensus       219 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~  292 (384)
T d2omza2         219 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL  292 (384)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCCC--CHHHCCCCCCHHCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCCCC
T ss_conf             7787888877777896--13432565341004467447877--53554668775456744578773--235652222332


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECC
Q ss_conf             67314223589954236787855617887355568468876454533167886420110023443101279750440012
Q 003488          547 RSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEM  626 (816)
Q Consensus       547 ~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (816)
                      ..|.+.+..    .+..++.++.+++++|++++..+   +                                        
T Consensus       293 ~~n~l~~~~----~~~~~~~l~~L~ls~n~l~~l~~---l----------------------------------------  325 (384)
T d2omza2         293 NENQLEDIS----PISNLKNLTYLTLYFNNISDISP---V----------------------------------------  325 (384)
T ss_dssp             CSSCCSCCG----GGGGCTTCSEEECCSSCCSCCGG---G----------------------------------------
T ss_pred             CCCCCCCCC----CCCHHCCCCEEECCCCCCCCCCC---C----------------------------------------
T ss_conf             323333322----10000246767777887789845---3----------------------------------------


Q ss_pred             CCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             122332089836883544584432177889689735785866688241166877957488872
Q 003488          627 NILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNR  689 (816)
Q Consensus       627 ~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~  689 (816)
                      ..++.|+.|++++|++++ ++ .+.++++|+.|++++|++++.+|  ++++++|+.|+|++|.
T Consensus       326 ~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         326 SSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEEECCCCC
T ss_conf             668988989898998999-74-67089999989897995899800--0039999996397895

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-39  Score=189.18  Aligned_cols=270  Identities=18%  Similarity=0.193  Sum_probs=182.2

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEECCCCCCC
Q ss_conf             77964798587767889977517870377234433334567899894748899799999800113588879985588485
Q 003488          401 RFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFN  480 (816)
Q Consensus       401 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  480 (816)
                      +.++.++..++..+...++.++.|++++|+++...+..|..+++|+.|++++|.+....|..|..+..|+.+++++|+++
T Consensus        13 ~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCCCCC
T ss_conf             99985599988519888999798978499189869657604656523112344344523566527985578315687567


Q ss_pred             CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             577835559989648984588255778702579999969987689678--898511148999849986673142235899
Q 003488          481 GSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID--DTFPHWLAQLPELLVLILRSNKFYGLIGNT  558 (816)
Q Consensus       481 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~  558 (816)
                      ... ..+  ...++.+.+.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|.+....   
T Consensus        93 ~l~-~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~---  166 (305)
T d1xkua_          93 ELP-EKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP---  166 (305)
T ss_dssp             BCC-SSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC---
T ss_pred             CCC-CCH--HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---
T ss_conf             676-400--11132321024610234444540133110000123333346777642234565671203467745167---


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECC
Q ss_conf             54236787855617887355568468876454533167886420110023443101279750440012122332089836
Q 003488          559 DARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFS  638 (816)
Q Consensus       559 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs  638 (816)
                        ...+++++.|++++|...+..+..+                                         ..+..++.|+++
T Consensus       167 --~~~~~~L~~L~l~~n~~~~~~~~~~-----------------------------------------~~~~~l~~L~~s  203 (305)
T d1xkua_         167 --QGLPPSLTELHLDGNKITKVDAASL-----------------------------------------KGLNNLAKLGLS  203 (305)
T ss_dssp             --SSCCTTCSEEECTTSCCCEECTGGG-----------------------------------------TTCTTCCEEECC
T ss_pred             --CCCCCCCCEEECCCCCCCCCCHHHH-----------------------------------------HCCCCCCCCCCC
T ss_conf             --1017766789897886778882676-----------------------------------------413413301544


Q ss_pred             CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC------CCCCCCCEEECCCC
Q ss_conf             883544584432177889689735785866688241166877957488872535586466------78676793857468
Q 003488          639 SNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQL------TSLNFLSKLNLSHN  712 (816)
Q Consensus       639 ~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l------~~l~~L~~L~ls~N  712 (816)
                      +|.+++..+..+.++++|++|+|++|+++ .+|..+.++++|+.|+|++|+++......|      ..+.+|+.+++++|
T Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         204 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCHHCCCCCCCEEECCCC
T ss_conf             55332223454334433224302554002-46311033467898989898657638100267210021588897889899


Q ss_pred             CCC-CCCCC
Q ss_conf             560-37999
Q 003488          713 QLE-GPIPQ  720 (816)
Q Consensus       713 ~l~-g~ip~  720 (816)
                      ++. ..+|.
T Consensus       283 ~~~~~~~~~  291 (305)
T d1xkua_         283 PVQYWEIQP  291 (305)
T ss_dssp             SSCGGGSCG
T ss_pred             CCCCCCCCH
T ss_conf             576676897

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-38  Score=183.53  Aligned_cols=210  Identities=20%  Similarity=0.147  Sum_probs=125.9

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             88799855884855778355599896489845882557787025799999699876-89678898511148999849986
Q 003488          468 TLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVA-NNRIDDTFPHWLAQLPELLVLIL  546 (816)
Q Consensus       468 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L  546 (816)
                      ++++|++++|+++...+..|.+++.|+++++++|.+....+..+..++.++.++.. .+.+....+..+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEC
T ss_conf             98889774881798797786414213000013445433211121222222222222102235446201010102778756


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECC
Q ss_conf             67314223589954236787855617887355568468876454533167886420110023443101279750440012
Q 003488          547 RSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEM  626 (816)
Q Consensus       547 ~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (816)
                      ++|.+....+  ..+...++|+.+++++|.+++..+ ..+                                        
T Consensus       113 ~~n~~~~~~~--~~~~~~~~L~~l~l~~N~l~~i~~-~~f----------------------------------------  149 (284)
T d1ozna_         113 DRCGLQELGP--GLFRGLAALQYLYLQDNALQALPD-DTF----------------------------------------  149 (284)
T ss_dssp             TTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCT-TTT----------------------------------------
T ss_pred             CCCCCCCCCC--CCCCHHCCCCHHHHCCCCCCCCCH-HHH----------------------------------------
T ss_conf             8854432013--533200012110200143144580-574----------------------------------------


Q ss_pred             CCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             12233208983688354458443217788968973578586668824116687795748887253558646678676793
Q 003488          627 NILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSK  706 (816)
Q Consensus       627 ~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  706 (816)
                      .....++.|++++|++++..+..+.++++|+.+++++|++++..|..|+++++|+.||+++|.+.+..+..|+.+++|+.
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             CCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             04340502231417656625666546563413142114346628167665320002333335221000002355465688


Q ss_pred             EECCCCCCCCCCCC
Q ss_conf             85746856037999
Q 003488          707 LNLSHNQLEGPIPQ  720 (816)
Q Consensus       707 L~ls~N~l~g~ip~  720 (816)
                      +++++|++.|.++.
T Consensus       230 L~l~~N~l~C~C~~  243 (284)
T d1ozna_         230 LRLNDNPWVCDCRA  243 (284)
T ss_dssp             EECCSSCEECSGGG
T ss_pred             EEECCCCCCCCCCC
T ss_conf             98119988787564

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-36  Score=175.66  Aligned_cols=61  Identities=30%  Similarity=0.316  Sum_probs=23.5

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             9989984278598887700369998669981169798679634799999968988289798
Q 003488          182 QLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLN  242 (816)
Q Consensus       182 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  242 (816)
                      ++++|++++|+++...+.+|.++++|++|++++|.+....|..|..+++|+++++++|.+.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCCCCC
T ss_conf             9798978499189869657604656523112344344523566527985578315687567

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=181.31  Aligned_cols=232  Identities=22%  Similarity=0.198  Sum_probs=107.8

Q ss_pred             CCEEECCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             8947488997999998001135888799855884855778355599896489845-882557787025799999699876
Q 003488          445 IEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILN-DNQFEGPLPQSLANCSRLQVLNVA  523 (816)
Q Consensus       445 L~~L~ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~  523 (816)
                      ++.|++++|+++...+..|.++..|+++++++|.+....+..+.....++.+... .+.+....+..|.++++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECC
T ss_conf             88897748817987977864142130000134454332111212222222222221022354462010101027787568


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             89678898511148999849986673142235899542367878556178873555684688764545331678864201
Q 003488          524 NNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQV  603 (816)
Q Consensus       524 ~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~  603 (816)
                      +|.+....+..+...++|+.+++++|.+++..+  ..+..++.|+.|++++|.+.+..+. .+                 
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~--~~f~~~~~L~~L~l~~N~l~~l~~~-~f-----------------  173 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPER-AF-----------------  173 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCEECTT-TT-----------------
T ss_pred             CCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCH--HHHCCCCCHHHCCCCCCCCCCCCHH-HH-----------------
T ss_conf             854432013533200012110200143144580--5740434050223141765662566-65-----------------


Q ss_pred             EECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             10023443101279750440012122332089836883544584432177889689735785866688241166877957
Q 003488          604 QYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESL  683 (816)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  683 (816)
                                             ..++.++.+++++|++++..|..|.++++|++||+++|++.+..|..++++++|+.|
T Consensus       174 -----------------------~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         174 -----------------------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             -----------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             -----------------------CCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             -----------------------465634131421143466281676653200023333352210000023554656889


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             4888725355864667867679385746856037999
Q 003488          684 DLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ  720 (816)
Q Consensus       684 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  720 (816)
                      ++++|.+.+.-+.. .....++.+....+++.+..|.
T Consensus       231 ~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         231 RLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             ECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             EECCCCCCCCCCCH-HHHHHHHHCCCCCCCEEECCCH
T ss_conf             81199887875646-9999998673888866747966

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=167.77  Aligned_cols=202  Identities=21%  Similarity=0.169  Sum_probs=119.9

Q ss_pred             CCCCEEECCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             99894748899799999800113588879985588485577835559989648984588255778702579999969987
Q 003488          443 APIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNV  522 (816)
Q Consensus       443 ~~L~~L~ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  522 (816)
                      ..+.+++.+++.++ .+|..+.  .+++.|++++|.+.+..+..|.++++|+.|++++|+++.. + .+..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             CCCEEEECCCCCCC-EECCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCC
T ss_conf             89869980699988-6196757--6889898849928985977863456552213566544443-1-1111223211111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             68967889851114899984998667314223589954236787855617887355568468876454533167886420
Q 003488          523 ANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQ  602 (816)
Q Consensus       523 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~  602 (816)
                      ++|++... +..+.++++|+.|++++|.+....+  ..+.                                        
T Consensus        85 s~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~----------------------------------------  121 (266)
T d1p9ag_          85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPL--GALR----------------------------------------  121 (266)
T ss_dssp             CSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCS--STTT----------------------------------------
T ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEC--CCCC----------------------------------------
T ss_conf             22222111-1121222222222222231101100--1122----------------------------------------


Q ss_pred             EEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             11002344310127975044001212233208983688354458443217788968973578586668824116687795
Q 003488          603 VQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLES  682 (816)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  682 (816)
                                               .+..+..+++++|.++...+..+..++.++.+++++|++++..+..++.+++|+.
T Consensus       122 -------------------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~  176 (266)
T d1p9ag_         122 -------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT  176 (266)
T ss_dssp             -------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             -------------------------CCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             -------------------------2211112212434210221233322111000000015652237200134212423


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             748887253558646678676793857468560379
Q 003488          683 LDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPI  718 (816)
Q Consensus       683 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  718 (816)
                      |+|++|+++ .+|.++..+++|+.|++++|++.+.+
T Consensus       177 L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             EECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             EECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCCCC
T ss_conf             430139785-56866777888999983699987886

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-32  Score=156.09  Aligned_cols=178  Identities=22%  Similarity=0.179  Sum_probs=97.4

Q ss_pred             CCCEEECCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             98947488997999998001135888799855884855778355599896489845882557787025799999699876
Q 003488          444 PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVA  523 (816)
Q Consensus       444 ~L~~L~ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  523 (816)
                      +++.|++++|.+++..+..|..+++|++|++++|+++.. + .+..+++|+.|++++|+++. .+..+..+++|+.|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
T ss_conf             889898849928985977863456552213566544443-1-11112232111112222211-11121222222222222


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             89678898511148999849986673142235899542367878556178873555684688764545331678864201
Q 003488          524 NNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQV  603 (816)
Q Consensus       524 ~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~  603 (816)
                      +|.+....+..+..+.++++|++++|.+....+  ..+.                                         
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~--~~~~-----------------------------------------  145 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPP--GLLT-----------------------------------------  145 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT--TTTT-----------------------------------------
T ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEECC--CCCC-----------------------------------------
T ss_conf             231101100112222111122124342102212--3332-----------------------------------------


Q ss_pred             EECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             10023443101279750440012122332089836883544584432177889689735785866688241166877957
Q 003488          604 QYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESL  683 (816)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  683 (816)
                                              .++.++.+++++|++++..+..+..+++|++|+|++|+++ .+|+.+..+++|+.|
T Consensus       146 ------------------------~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         146 ------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA  200 (266)
T ss_dssp             ------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEE
T ss_pred             ------------------------CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEE
T ss_conf             ------------------------2111000000015652237200134212423430139785-568667778889999


Q ss_pred             ECCCCCCCC
Q ss_conf             488872535
Q 003488          684 DLSSNRLVG  692 (816)
Q Consensus       684 ~Ls~N~l~~  692 (816)
                      +|++|.+..
T Consensus       201 ~L~~Np~~C  209 (266)
T d1p9ag_         201 FLHGNPWLC  209 (266)
T ss_dssp             ECCSCCBCC
T ss_pred             EECCCCCCC
T ss_conf             836999878

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.98  E-value=2.8e-28  Score=139.58  Aligned_cols=13  Identities=46%  Similarity=0.317  Sum_probs=4.7

Q ss_pred             CCCEEECCCCCCC
Q ss_conf             7795748887253
Q 003488          679 VLESLDLSSNRLV  691 (816)
Q Consensus       679 ~L~~L~Ls~N~l~  691 (816)
                      +|+.|++++|+++
T Consensus       305 ~L~~L~L~~N~L~  317 (353)
T d1jl5a_         305 RLERLIASFNHLA  317 (353)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             CCCEEECCCCCCC
T ss_conf             7998989999687

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.97  E-value=5.1e-27  Score=133.88  Aligned_cols=54  Identities=26%  Similarity=0.352  Sum_probs=25.6

Q ss_pred             CCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             33208983688354458443217788968973578586668824116687795748887253
Q 003488          630 SIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV  691 (816)
Q Consensus       630 ~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  691 (816)
                      +.|+.|++++|+++ .+|..   +++|+.|+|++|+++ .+|+.   +++|+.|++++|+++
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC
T ss_conf             98898979799168-35665---487998989999687-54532---288898987699189

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-34  Score=165.54  Aligned_cols=13  Identities=38%  Similarity=0.562  Sum_probs=4.6

Q ss_pred             CCCCEEECCCCCC
Q ss_conf             8896897357858
Q 003488          654 NLLKMLNFSHNHL  666 (816)
Q Consensus       654 ~~L~~L~Ls~N~l  666 (816)
                      +.|++|||++|++
T Consensus       397 ~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         397 HSLRELDLSNNCL  409 (460)
T ss_dssp             CCCCEEECCSSSC
T ss_pred             CCCCEEECCCCCC
T ss_conf             9889898999969

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-33  Score=161.80  Aligned_cols=62  Identities=23%  Similarity=0.213  Sum_probs=24.6

Q ss_pred             CCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCCC----CC-CCCCCCEEECCCCCCC
Q ss_conf             8896897357858666----8824116687795748887253558646----67-8676793857468560
Q 003488          654 NLLKMLNFSHNHLTGR----IPSSLRNLTVLESLDLSSNRLVGQIPTQ----LT-SLNFLSKLNLSHNQLE  715 (816)
Q Consensus       654 ~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~-~l~~L~~L~ls~N~l~  715 (816)
                      +.|+.|+|++|.+++.    +++.+...++|+.||+++|.++......    +. ....|+.+++.+|.+.
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf             77788989799797599999999996299889898999969879999999999747886678989898789

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.8e-28  Score=139.56  Aligned_cols=188  Identities=21%  Similarity=0.260  Sum_probs=109.1

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             35888799855884855778355599896489845882557787025799999699876896788985111489998499
Q 003488          465 DSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVL  544 (816)
Q Consensus       465 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  544 (816)
                      .+.+|+.|++.+|.+...  ..+..+++|+.|++++|.+++..+  +..+++++.+++++|.++..  ..+.++++|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HCCCCCEEECCCCCCCCC--HHHHCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC
T ss_conf             848868997779999766--457448888376357853202543--11233432012111222222--222222222122


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEE
Q ss_conf             86673142235899542367878556178873555684688764545331678864201100234431012797504400
Q 003488          545 ILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDV  624 (816)
Q Consensus       545 ~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (816)
                      .++++...+..    .+...+.+..+.++.+.+....+.                                         
T Consensus       113 ~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~-----------------------------------------  147 (227)
T d1h6ua2         113 DLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISPL-----------------------------------------  147 (227)
T ss_dssp             ECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGGG-----------------------------------------
T ss_pred             CCCCCCCCCCC----HHCCCCCHHHHHCHHHHHCHHHHH-----------------------------------------
T ss_conf             12224433110----000023012220000000000000-----------------------------------------


Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             12122332089836883544584432177889689735785866688241166877957488872535586466786767
Q 003488          625 EMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFL  704 (816)
Q Consensus       625 ~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  704 (816)
                        ...+.++.+++++|.+.+..  .++++++|++|+|++|++++ +| .++++++|+.|++++|+++...|  ++.+++|
T Consensus       148 --~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L  219 (227)
T d1h6ua2         148 --AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNL  219 (227)
T ss_dssp             --GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTC
T ss_pred             --CCCCCCCCCCCCCCCCCCCH--HHCCCCCCEECCCCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCCC--CCCCCCC
T ss_conf             --10211100233333333100--10564633564458884177-85-34479999989795996899802--0369998


Q ss_pred             CEEECCC
Q ss_conf             9385746
Q 003488          705 SKLNLSH  711 (816)
Q Consensus       705 ~~L~ls~  711 (816)
                      +.|++++
T Consensus       220 ~~L~lsn  226 (227)
T d1h6ua2         220 FIVTLTN  226 (227)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEC
T ss_conf             9897129

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.1e-27  Score=135.59  Aligned_cols=54  Identities=20%  Similarity=0.279  Sum_probs=24.5

Q ss_pred             CCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             2332089836883544584432177889689735785866688241166877957488
Q 003488          629 LSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLS  686 (816)
Q Consensus       629 ~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls  686 (816)
                      ++.|+.||+++|++++ +| .++++++|+.|+|++|++++. | .++++++|+.|+++
T Consensus       172 l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         172 LSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             CCCCEECCCCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCC-C-CCCCCCCCCEEEEE
T ss_conf             4633564458884177-85-344799999897959968998-0-20369998989712

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-28  Score=139.72  Aligned_cols=221  Identities=14%  Similarity=0.094  Sum_probs=116.4

Q ss_pred             CEEECCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCC
Q ss_conf             94748899799999800113588879985588485577835559989648984588255778-70257999996998768
Q 003488          446 EFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPL-PQSLANCSRLQVLNVAN  524 (816)
Q Consensus       446 ~~L~ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~  524 (816)
                      +.++.++..++ .+|..+.  .++++|++++|++....+..|.++++|++|++++|.+...+ +.+|..++.++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEECCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             99998189988-7688889--98899987699189649668614643232110221124201001122222222211111


Q ss_pred             -CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             -9678898511148999849986673142235899542367878556178873555684688764545331678864201
Q 003488          525 -NRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQV  603 (816)
Q Consensus       525 -n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~  603 (816)
                       |.+....+..+.++++|+.+++++|.+....+ ......++.+..+..+++.+....+ ..+.                
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~-~~~~----------------  149 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIER-NSFV----------------  149 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCEEEEEESCTTCCEECT-TSST----------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCC----------------
T ss_conf             234322222212222222222342111125543-3322211112222222121112222-2222----------------


Q ss_pred             EECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEE-ECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             10023443101279750440012122332089836883544584432177889689-73578586668824116687795
Q 003488          604 QYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKML-NFSHNHLTGRIPSSLRNLTVLES  682 (816)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L-~Ls~N~l~~~ip~~l~~l~~L~~  682 (816)
                                             .....+..+++++|+++.. +........++.+ ++++|+++...+..|.++++|+.
T Consensus       150 -----------------------~~~~~l~~L~l~~n~l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~  205 (242)
T d1xwdc1         150 -----------------------GLSFESVILWLNKNGIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI  205 (242)
T ss_dssp             -----------------------TSBSSCEEEECCSSCCCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSE
T ss_pred             -----------------------CCCCCCEEEECCCCCCCCC-CCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCE
T ss_conf             -----------------------2233100122001233332-2222220111012123543246424788668999998


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             74888725355864667867679385746
Q 003488          683 LDLSSNRLVGQIPTQLTSLNFLSKLNLSH  711 (816)
Q Consensus       683 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  711 (816)
                      |++++|+++...+..|+.++.|+.+++.+
T Consensus       206 L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         206 LDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             EECCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf             98979928945977973771341476788

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=4.3e-26  Score=129.75  Aligned_cols=77  Identities=26%  Similarity=0.362  Sum_probs=48.1

Q ss_pred             CCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             23320898368835445844321778896897357858666882411668779574888725355864667867679385
Q 003488          629 LSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLN  708 (816)
Q Consensus       629 ~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  708 (816)
                      ++.++.+++++|.+++.  ..+..+++|+.+++++|++++. + .++++++|+.|++++|+++. +| ++..+++|+.|+
T Consensus       133 l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  206 (210)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEE
T ss_conf             11122211222333454--3100013321001346430256-4-53678989999897998998-72-116999989997


Q ss_pred             CCC
Q ss_conf             746
Q 003488          709 LSH  711 (816)
Q Consensus       709 ls~  711 (816)
                      +++
T Consensus       207 Ls~  209 (210)
T d1h6ta2         207 LFS  209 (210)
T ss_dssp             EEE
T ss_pred             CCC
T ss_conf             118

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=9.7e-25  Score=123.64  Aligned_cols=163  Identities=24%  Similarity=0.289  Sum_probs=84.6

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             88799855884855778355599896489845882557787025799999699876896788985111489998499866
Q 003488          468 TLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILR  547 (816)
Q Consensus       468 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  547 (816)
                      +++.|++++|.+....  .+..+++|+.|++++|++++..  .+..+++|+.|++++|++++. + .+.++++|+.++++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCCH--HHHHCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCC
T ss_conf             8458978279888744--4764899898769896025860--113586212014333332122-2-12122211122345


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECCC
Q ss_conf             73142235899542367878556178873555684688764545331678864201100234431012797504400121
Q 003488          548 SNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMN  627 (816)
Q Consensus       548 ~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (816)
                      +|.+...    ..+..++.++.+++++|.++...+.                                           .
T Consensus       121 ~~~~~~~----~~l~~l~~l~~l~~~~n~l~~~~~~-------------------------------------------~  153 (210)
T d1h6ta2         121 HNGISDI----NGLVHLPQLESLYLGNNKITDITVL-------------------------------------------S  153 (210)
T ss_dssp             TSCCCCC----GGGGGCTTCCEEECCSSCCCCCGGG-------------------------------------------G
T ss_pred             CCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCC-------------------------------------------C
T ss_conf             6532211----2201111122211222333454310-------------------------------------------0


Q ss_pred             CCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             223320898368835445844321778896897357858666882411668779574888
Q 003488          628 ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSS  687 (816)
Q Consensus       628 ~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  687 (816)
                      .++.|+.+++++|++++ ++ .+.++++|+.|+|++|+++. +| .+.++++|+.|+|++
T Consensus       154 ~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 RLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCC-CC-CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCC
T ss_conf             01332100134643025-64-53678989999897998998-72-116999989997118

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=5.1e-25  Score=124.91  Aligned_cols=71  Identities=38%  Similarity=0.485  Sum_probs=34.5

Q ss_pred             CCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             32089836883544584432177889689735785866688241166877957488872535586466786767938
Q 003488          631 IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKL  707 (816)
Q Consensus       631 ~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  707 (816)
                      .++.+++++|++.. ++ .+..+++|+.|++++|++++. + .++++++|+.|++++|+++.. + .+.++++|+.|
T Consensus       129 ~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         129 NLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             TCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             HHHHHHHHHHHHCC-CC-CCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCCC-C-CCCCCCCCCCC
T ss_conf             36776431111002-34-333211111122345555677-0-116799899997879979988-1-01278998949

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=1.5e-25  Score=127.32  Aligned_cols=134  Identities=23%  Similarity=0.265  Sum_probs=63.2

Q ss_pred             EEECCCCCCCCCCCCHHHCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             47488997999998001135888799855884855-77835559989648984588255778702579999969987689
Q 003488          447 FIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNG-SIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANN  525 (816)
Q Consensus       447 ~L~ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  525 (816)
                      .++.++++++ .+|..+.  ..+++|++++|++++ ..+..|.++++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEECCCCC-CCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf             9997089967-0298989--787889848987755302002578762721301363221212122211222210100355


Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHH
Q ss_conf             678898511148999849986673142235899542367878556178873555684688
Q 003488          526 RIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRY  585 (816)
Q Consensus       526 ~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  585 (816)
                      ++....+.+|.++++|++|+|++|.+++..+  ..+..+++|+.+++++|.+.+..+..+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCH--HHHCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             3443497998079746552457745353597--785687533420003644343530277

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=4.4e-24  Score=120.67  Aligned_cols=49  Identities=35%  Similarity=0.459  Sum_probs=21.6

Q ss_pred             CCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             32089836883544584432177889689735785866688241166877957
Q 003488          631 IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESL  683 (816)
Q Consensus       631 ~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  683 (816)
                      .++.+++++|++++. + .++++++|+.|++++|++++ +| .++.+++|+.|
T Consensus       151 ~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         151 SLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CC-CCCCCCCCCCC
T ss_conf             111122345555677-0-11679989999787997998-81-01278998949

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.7e-24  Score=119.61  Aligned_cols=201  Identities=16%  Similarity=0.062  Sum_probs=98.1

Q ss_pred             CCCEEECCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEE
Q ss_conf             9894748899799999800113588879985588485577-83555998964898458-825577870257999996998
Q 003488          444 PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSI-PQISANGSGLVNLILND-NQFEGPLPQSLANCSRLQVLN  521 (816)
Q Consensus       444 ~L~~L~ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~  521 (816)
                      +++.|++++|.+....+..|.++++|++|++++|.+...+ +..|..++.++.+.+.. |.+....+..|.++++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88999876991896496686146432321102211242010011222222222111112343222222122222222223


Q ss_pred             CCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             768967889851-114899984998667314223589954236-787855617887355568468876454533167886
Q 003488          522 VANNRIDDTFPH-WLAQLPELLVLILRSNKFYGLIGNTDARVI-FPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTS  599 (816)
Q Consensus       522 l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~  599 (816)
                      +++|.+....+. .+..++.+..+...++.+....+  ..+.. ...++.+++++|.++...+ ..+.            
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~--~~~~~~~~~l~~L~l~~n~l~~i~~-~~~~------------  174 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNGIQEIHN-CAFN------------  174 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT--TSSTTSBSSCEEEECCSSCCCEECT-TTTT------------
T ss_pred             CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEECCCCCCCCCCC-CCCC------------
T ss_conf             421111255433322211112222222121112222--2222223310012200123333222-2222------------


Q ss_pred             CCCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             42011002344310127975044001212233208983688354458443217788968973578586668824116687
Q 003488          600 TVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTV  679 (816)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  679 (816)
                                                  .....+.+++++|+++...+..|.++++|+.|+|++|+++...+..+.+++.
T Consensus       175 ----------------------------~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  226 (242)
T d1xwdc1         175 ----------------------------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  226 (242)
T ss_dssp             ----------------------------TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             ----------------------------CHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf             ----------------------------0111012123543246424788668999998989799289459779737713


Q ss_pred             CCEEECCC
Q ss_conf             79574888
Q 003488          680 LESLDLSS  687 (816)
Q Consensus       680 L~~L~Ls~  687 (816)
                      |+.+++.+
T Consensus       227 L~~l~~~~  234 (242)
T d1xwdc1         227 LRARSTYN  234 (242)
T ss_dssp             EESSSEES
T ss_pred             CCCCCCCC
T ss_conf             41476788

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=3.7e-25  Score=125.50  Aligned_cols=57  Identities=28%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             983688354458443217788968973578586668824116687795748887253
Q 003488          635 IDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV  691 (816)
Q Consensus       635 LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  691 (816)
                      |++++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+.
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             EEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf             100355344349799807974655245774535359778568753342000364434

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.8e-25  Score=124.64  Aligned_cols=260  Identities=22%  Similarity=0.168  Sum_probs=0.0

Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCHHHHCCCCCCEEE
Q ss_conf             9998799988644689544646888997759999999998990013798998887999989866-834332599998996
Q 003488            7 IGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQ-IPSEISQLSKMLSLD   85 (816)
Q Consensus         7 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~-~p~~l~~l~~L~~L~   85 (816)
                      +.+||++..+.+....  .+.. ..+..+.++......  .........+|++|+++++.++.. +...+.++++|++|+
T Consensus         3 ~~lDLs~~~l~~~~l~--~l~~-~~~~~lrl~~~~~~~--~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           3 QTLDLTGKNLHPDVTG--RLLS-QGVIAFRCPRSFMDQ--PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             SEEECTTCBCCHHHHH--HHHH-TTCSEEECTTCEECS--CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             CEEECCCCCCCCHHHH--HHHH-CCCEEEECCCCCCCC--CHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             7797899978814799--9874-554274652333455--2244256787887889898457779999997487765145


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCC---CCCCCCCCCCCEE
Q ss_conf             7899886436876788851289988885898558875512343103799749991188688878---8248999999999
Q 003488           86 LSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPI---PASLANLPQLTSL  162 (816)
Q Consensus        86 Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~L~~~~l~~~~---~~~l~~l~~L~~L  162 (816)
                      ++++ ...   ......+..+++|++|+++++...+......+...+++|++|++++|......   ...-..++.|+.|
T Consensus        78 L~~~-~l~---~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L  153 (284)
T d2astb2          78 LEGL-RLS---DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  153 (284)
T ss_dssp             CTTC-BCC---HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             CCCC-CCC---CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHH
T ss_conf             2346-798---678999851899757151001341235540365788743565224533233322000100011111012


Q ss_pred             ECCCCCCC---CCCHHHHCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             83179799---9843332299999899842785-9888770036999866998116-97986796347999999689882
Q 003488          163 SLSYNHFS---GHIPSFLSHLKQLYYLNLEQNN-LVGGIPDSFVNLTQLSFLDLSW-NQLTGRLPSCLKGLRNLVTLRLS  237 (816)
Q Consensus       163 ~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~l~  237 (816)
                      +++++...   .........+++|++|++++|. +++.....+..+++|++|++++ ..+++.....+..+++|+.|+++
T Consensus       154 ~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEEE
T ss_conf             21355424444434342323222123553223477830333321357687798999997873789997269998989644


Q ss_pred             CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCC
Q ss_conf             897986564355509998659992188577547211115999
Q 003488          238 GNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVN  279 (816)
Q Consensus       238 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  279 (816)
                      ++ +....-..+...+|+|+.   ..+.++...++.++....
T Consensus       234 ~~-~~d~~l~~l~~~lp~L~i---~~~~ls~~~~~~~~~~~~  271 (284)
T d2astb2         234 GI-VPDGTLQLLKEALPHLQI---NCSHFTTIARPTIGNKKN  271 (284)
T ss_dssp             TS-SCTTCHHHHHHHSTTSEE---SCCCSCCTTCSSCSSTTC
T ss_pred             CC-CCHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCCCC
T ss_conf             88-898999999976843661---686587777885476664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.89  E-value=3.9e-24  Score=120.92  Aligned_cols=245  Identities=19%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCHHHHCC----CCCCEEECCCCCCCCCCCC------CHHHHHHCCCCCCEEECCC
Q ss_conf             99001379899888799998986683433259----9998996789988643687------6788851289988885898
Q 003488           47 ISSGFGRLISLTHLNLSNSYFSGQIPSEISQL----SKMLSLDLSKNDEVRIESP------VWKGLIENLTKLKELVLSE  116 (816)
Q Consensus        47 ~~~~~~~l~~L~~L~Ls~~~~~~~~p~~l~~l----~~L~~L~Ls~n~~~~~~~~------~~~~~l~~l~~L~~L~l~~  116 (816)
                      +...+.....|+.|+|++|.+.......++..    ++|+.++++.+........      .+...+..+++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999638997889784983778999999999985899888888777543345421067879998875477756330000


Q ss_pred             CCCCCC----CCHHHHHCCCCCCCEEECCCCCCCCCCCCCC-------------CCCCCCCEEECCCCCCC----CCCHH
Q ss_conf             558875----5123431037997499911886888788248-------------99999999983179799----98433
Q 003488          117 VDMSTI----VLDYSLTNLSSSLSYLHLTGCNLIGPIPASL-------------ANLPQLTSLSLSYNHFS----GHIPS  175 (816)
Q Consensus       117 ~~~~~~----~~~~~l~~l~~~L~~L~L~~~~l~~~~~~~l-------------~~l~~L~~L~Ls~n~l~----~~~~~  175 (816)
                      |.+...    ... .+... ++|++|++++|.+.......+             ...+.|+.+.++.|.+.    .....
T Consensus       103 n~i~~~~~~~l~~-~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~  180 (344)
T d2ca6a1         103 NAFGPTAQEPLID-FLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  180 (344)
T ss_dssp             CCCCTTTHHHHHH-HHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCCCCCCCCHHH-HHCCC-CCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             1345543331011-10023-432100000246666543111121222211000146764211101365013554332211


Q ss_pred             HHCCCCCCCEEECCCCCCCCC-----CCCCCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             322999998998427859888-----770036999866998116979867----96347999999689882897986564
Q 003488          176 FLSHLKQLYYLNLEQNNLVGG-----IPDSFVNLTQLSFLDLSWNQLTGR----LPSCLKGLRNLVTLRLSGNSLNGTIP  246 (816)
Q Consensus       176 ~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~  246 (816)
                      .+...+.|+.+++++|.+...     +...+..+++|+.|++++|.+...    +...+..+++|++|++++|.+.+...
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHH
T ss_conf             11233321335433322222223200243321101211222333322222222344433232211110300475671566


Q ss_pred             HHHHHCC-----CCCCEEECCCCCCCCCCCHHHH-----CCCCCCEEECCCCCCCCC
Q ss_conf             3555099-----9865999218857754721111-----599989899205777673
Q 003488          247 SWLFTVL-----PYLEVIHLRDNRFTGSIPSTIF-----ELVNLTSIRLSSNNLSGH  293 (816)
Q Consensus       247 ~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~  293 (816)
                      ..+...+     +.|++|++++|.+.......+.     .+++|+.|++++|.+...
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf             788877631568888989898986980899999999970389999897879808986

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.5e-19  Score=100.27  Aligned_cols=131  Identities=21%  Similarity=0.191  Sum_probs=0.0

Q ss_pred             HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCC
Q ss_conf             33229999989984278598887700369998669981169798679634799999968988289798656435550999
Q 003488          175 SFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP  254 (816)
Q Consensus       175 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  254 (816)
                      ..+.++.++++|++++|+++ .++..+..+++|+.|++++|.+...  +.+..+++|++|++++|.+. .++...+..++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             HHCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCHHHHHCCCCCCC-CCCCCCCCCCC
T ss_conf             75168574848978899788-6576200414599898979978764--77445761306431021345-77763223345


Q ss_pred             CCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCC--CCCCCCCCCCCEEE
Q ss_conf             86599921885775472-111159998989920577767335--10005888666666
Q 003488          255 YLEVIHLRDNRFTGSIP-STIFELVNLTSIRLSSNNLSGHIE--LCMFARLKNLQYLY  309 (816)
Q Consensus       255 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~~~~L~~L~  309 (816)
                      +|+.|++++|.+..... ..+..+++|+++++++|.+.....  ...+..+++|++|+
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCEEC
T ss_conf             3443420300016654211001365320664079963456106999998789958337

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=4.8e-19  Score=98.03  Aligned_cols=85  Identities=33%  Similarity=0.397  Sum_probs=46.5

Q ss_pred             CCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEE
Q ss_conf             233208983688354458443217788968973578586668824116687795748887253558-6466786767938
Q 003488          629 LSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQI-PTQLTSLNFLSKL  707 (816)
Q Consensus       629 ~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L  707 (816)
                      +..++.||+++|+++ .+|..++.+++|+.|++++|.+++ +| .++.+++|+.|++++|+++... ...+..+++|+.+
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCC-CC-CCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEE
T ss_conf             898898979787168-652156554313545324321123-57-412335557688889865888882565379999999


Q ss_pred             ECCCCCCCC
Q ss_conf             574685603
Q 003488          708 NLSHNQLEG  716 (816)
Q Consensus       708 ~ls~N~l~g  716 (816)
                      ++++|++++
T Consensus        96 ~l~~N~i~~  104 (124)
T d1dcea3          96 NLQGNSLCQ  104 (124)
T ss_dssp             ECTTSGGGG
T ss_pred             ECCCCCCCC
T ss_conf             897996886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.75  E-value=5.7e-20  Score=102.22  Aligned_cols=76  Identities=28%  Similarity=0.295  Sum_probs=39.7

Q ss_pred             CCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCC----------CC
Q ss_conf             32089836883544584432177889689735785866688-24116687795748887253558646----------67
Q 003488          631 IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIP-SSLRNLTVLESLDLSSNRLVGQIPTQ----------LT  699 (816)
Q Consensus       631 ~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~  699 (816)
                      .|+.|++++|+++. + +.+..+++|+.|++++|+++.... ..++.+++|+.|++++|.+....+..          +.
T Consensus        94 ~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~  171 (198)
T d1m9la_          94 TLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             23333333322222-2-222222234111234102125542212367776302342798434676322220558999998


Q ss_pred             CCCCCCEEE
Q ss_conf             867679385
Q 003488          700 SLNFLSKLN  708 (816)
Q Consensus       700 ~l~~L~~L~  708 (816)
                      .+++|+.||
T Consensus       172 ~lp~L~~LD  180 (198)
T d1m9la_         172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCCEES
T ss_pred             HCCCCCEEC
T ss_conf             788958769

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.74  E-value=4.5e-20  Score=102.68  Aligned_cols=37  Identities=22%  Similarity=0.199  Sum_probs=14.7

Q ss_pred             CCEEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCC
Q ss_conf             32089836883544584-43217788968973578586
Q 003488          631 IFLVIDFSSNRFEGQIP-EVVGKLNLLKMLNFSHNHLT  667 (816)
Q Consensus       631 ~l~~LdLs~n~l~~~ip-~~l~~l~~L~~L~Ls~N~l~  667 (816)
                      .|+.|++++|+++.... ..+..+++|+.|+|++|++.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             CCCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             34111234102125542212367776302342798434

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.8e-16  Score=85.63  Aligned_cols=88  Identities=20%  Similarity=0.139  Sum_probs=57.5

Q ss_pred             CCCCEEEECCCC-CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             233208983688-3544584432177889689735785866688241166877957488872535586466786767938
Q 003488          629 LSIFLVIDFSSN-RFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKL  707 (816)
Q Consensus       629 ~~~l~~LdLs~n-~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  707 (816)
                      ++.++.|++++| .++...+..|.++++|+.|+|++|+|+...|..|..+++|+.|+|++|+++...+..|..+ .|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred             CCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCC-CCCCC
T ss_conf             65657431689866443692122566666721620212477420111245543333226787851574563353-21243


Q ss_pred             ECCCCCCCCC
Q ss_conf             5746856037
Q 003488          708 NLSHNQLEGP  717 (816)
Q Consensus       708 ~ls~N~l~g~  717 (816)
                      ++++|++.+.
T Consensus       109 ~L~~Np~~C~  118 (156)
T d2ifga3         109 VLSGNPLHCS  118 (156)
T ss_dssp             ECCSSCCCCC
T ss_pred             CCCCCCCCCC
T ss_conf             3579863388

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.4e-16  Score=84.31  Aligned_cols=93  Identities=19%  Similarity=0.165  Sum_probs=34.9

Q ss_pred             CCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             989648984588-2557787025799999699876896788985111489998499866731422358995423678785
Q 003488          490 GSGLVNLILNDN-QFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLR  568 (816)
Q Consensus       490 l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~  568 (816)
                      +++++.|++.+| .++...+.+|.++++|+.|++++|+++.+.+.+|..+++|++|+|++|+++...+.  .+. ...++
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~--~~~-~~~l~  106 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK--TVQ-GLSLQ  106 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST--TTC-SCCCC
T ss_pred             CCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHH--HHC-CCCCC
T ss_conf             656574316898664436921225666667216202124774201112455433332267878515745--633-53212


Q ss_pred             EEECCCCCCCCCCCHHH
Q ss_conf             56178873555684688
Q 003488          569 ILDLSRNEFTGVLPTRY  585 (816)
Q Consensus       569 ~L~Ls~N~l~~~~p~~~  585 (816)
                      .|++++|++.......|
T Consensus       107 ~L~L~~Np~~C~C~~~~  123 (156)
T d2ifga3         107 ELVLSGNPLHCSCALRW  123 (156)
T ss_dssp             EEECCSSCCCCCGGGHH
T ss_pred             CCCCCCCCCCCCCHHHH
T ss_conf             43357986338811799

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.6e-13  Score=70.17  Aligned_cols=80  Identities=28%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             CCCCEEEECCCCCCCCC--CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-------CC
Q ss_conf             23320898368835445--8443217788968973578586668824116687795748887253558646-------67
Q 003488          629 LSIFLVIDFSSNRFEGQ--IPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQ-------LT  699 (816)
Q Consensus       629 ~~~l~~LdLs~n~l~~~--ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-------l~  699 (816)
                      ++.|+.||||+|+++..  ++..+..+++|+.|+|++|.++...+-.......|+.|++++|.+.......       ++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf             87878863777666677315889865885610004357213423442220331042664899767676661569999999


Q ss_pred             CCCCCCEEE
Q ss_conf             867679385
Q 003488          700 SLNFLSKLN  708 (816)
Q Consensus       700 ~l~~L~~L~  708 (816)
                      .+++|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
T ss_conf             889978799

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=9.3e-12  Score=65.28  Aligned_cols=70  Identities=26%  Similarity=0.182  Sum_probs=37.9

Q ss_pred             HHHHCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             43217788968973578586668--82411668779574888725355864667867679385746856037
Q 003488          648 EVVGKLNLLKMLNFSHNHLTGRI--PSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGP  717 (816)
Q Consensus       648 ~~l~~l~~L~~L~Ls~N~l~~~i--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  717 (816)
                      .....++.|++|+||+|+++..-  +..++.+++|+.|+|++|.++...+-.+-....|+.+++++|++++.
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCC
T ss_conf             889748787886377766667731588986588561000435721342344222033104266489976767

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.83  E-value=2.8e-09  Score=54.12  Aligned_cols=116  Identities=10%  Similarity=-0.002  Sum_probs=0.0

Q ss_pred             CCCCCCCEEECCC-CCCCCCC---CCCCCCCCCCCCEEECCCCCCC----CCCCHHHHCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             4688899775999-9999998---9900137989988879999898----668343325999989967899886436876
Q 003488           27 FLLPYLETLNLGS-NDFNSSL---ISSGFGRLISLTHLNLSNSYFS----GQIPSEISQLSKMLSLDLSKNDEVRIESPV   98 (816)
Q Consensus        27 ~~l~~L~~L~l~~-~~~~~~~---~~~~~~~l~~L~~L~Ls~~~~~----~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~   98 (816)
                      .+.++|+.|++++ +.+....   +..++...+.|++|++++|.+.    ..+...+...+.|++|++++|.+.......
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHH
T ss_conf             28999819782799998989999999997637764540120156215679887531000234330033010214599999


Q ss_pred             HHHHHHCCCCCCEEECCCCCCCCCC------CHHHHHCCCCCCCEEECCCC
Q ss_conf             7888512899888858985588755------12343103799749991188
Q 003488           99 WKGLIENLTKLKELVLSEVDMSTIV------LDYSLTNLSSSLSYLHLTGC  143 (816)
Q Consensus        99 ~~~~l~~l~~L~~L~l~~~~~~~~~------~~~~l~~l~~~L~~L~L~~~  143 (816)
                      +...+...+.|++|+++++......      ....+... ++|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n-~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCC
T ss_pred             HHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEECCCC
T ss_conf             999998489389877887768886579999999999729-98538648688

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.51  E-value=3.1e-08  Score=49.44  Aligned_cols=117  Identities=12%  Similarity=0.049  Sum_probs=0.0

Q ss_pred             CCCCCCCEEECCC-CCCCCCC---CCCCCCCCCCCCEEECCCCCCCCC----CCHHHHCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             4688899775999-9999998---990013798998887999989866----8343325999989967899886436876
Q 003488           27 FLLPYLETLNLGS-NDFNSSL---ISSGFGRLISLTHLNLSNSYFSGQ----IPSEISQLSKMLSLDLSKNDEVRIESPV   98 (816)
Q Consensus        27 ~~l~~L~~L~l~~-~~~~~~~---~~~~~~~l~~L~~L~Ls~~~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~   98 (816)
                      .+.+.|++|++++ +.++...   +-.++...++|++|++++|.++..    +...+...+.++.++++.+.+.......
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             HCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHH
T ss_conf             55999868876899998989999999888419825743015896117789999987752122101210254322014788


Q ss_pred             HHHHHHCCCCCCE--EECCCCCCCCCCCHHHHHC---CCCCCCEEECCCCC
Q ss_conf             7888512899888--8589855887551234310---37997499911886
Q 003488           99 WKGLIENLTKLKE--LVLSEVDMSTIVLDYSLTN---LSSSLSYLHLTGCN  144 (816)
Q Consensus        99 ~~~~l~~l~~L~~--L~l~~~~~~~~~~~~~l~~---l~~~L~~L~L~~~~  144 (816)
                      +...+...+.|+.  |+++.+.+...... .+..   ..++|+.|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~-~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEM-EIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHH-HHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCHHHHH-HHHHHHHHCCCCCEEECCCCC
T ss_conf             99999848652477321677867679999-999999849984788581898