Citrus Sinensis ID: 003519

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810---
MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTVGEDDLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCTTEKPPTWVEWRERPDSSNPSSADEPVSIPNGELQDQGGNGDVDVPEPSPSSSNTEDANITTTGELSKSIDENPSSKPSEPSESGSPSEPAESGTPSEPAESGTPSEPSESVDGNHPSSDPAATEVVKTVAKAEGTPEVTKDDKDVVNEAEN
ccccccccccccHHHHHHccccccHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHcccccHHHHHHcccccccccccccccccHHHcccHHHHHHHHHHHHHHHHcccccccccHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccEEccccccccHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHcccccccccccccccccHHcccccccHHHHHHHHHHHHHHHHccccccHHHccccccccHcHccccccccccccccccccccccccccccccHHHHHHcHHHccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccc
mfwrmaglstaspvetildkenftleelldedDIIQECKALNGRLINFLRERAQVEQLIQYIVVEapedaekrrtfkfpfvaceiFTCEVDIILKTLVEDEELMNLLFSflepkdshstllAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDkfsssdspevhANAAETLCSItrsappalaakisspnFIGRLFRHalensrpksvLVNSLSICIslldpkrltlgTYYMFNrqlthgstvtvnpetveGMLGRLGDLLKLLDVSSEESSLLTtygklqpplgkhrLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFfeypynnflhhHVENIILSClecknaplIEHLLHECNLVGKILEAeknftlkdsnkptvpaegrlpprignighLTRISNKLIQLGNNNSEIHAYLQensewndwQINVLSKRNTLENIYQwacgrptalhdrgrdsddddyqnrdYDVAALANNLSQAfrygiysnddvdeaqgslerddedvyfddesAEVVISSLrlgddqesgslftnsnwfafeddrvsheraagslaspspnieetgvtnggghdqvtvgeddlddtatsaavpvsksedsdvgklpndsvetgscttekpptwvewrerpdssnpssadepvsipngelqdqggngdvdvpepspsssntedanitttgelsksidenpsskpsepsesgspsepaesgtpsepaesgtpsepsesvdgnhpssdpaaTEVVKTVAkaegtpevtkddkDVVNEAEN
mfwrmaglstaspvetilDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVeapedaekrrTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRqlthgstvtvnPETVEGMLGRLGDLLKLLDVSSEESSLLTtygklqpplgkhrLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKnftlkdsnkptvpaegrlpprigNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSlerddedvyfdDESAEVVISSlrlgddqesgsLFTNSNWFAFEDDRVSHERaagslaspspnieetgvtngGGHDQVTVGEDDLDDTATSaavpvsksedsdvgklpndsvetgscttekpptwvewrerpDSSNPSSADEPVSIPNGELQDQGGNGDVDVPEPspsssntedanITTTgelsksidenpsskpsepsesgspsepaESGTPSEPAESGTPSEPSESVDGNHPSSDPAATEVVKTVakaegtpevtkddkdvvneaen
MFWRMAGLSTASPVETILDKENFTleelldeddIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMlgrlgdllklldvsseessllTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHdrgrdsddddyqnrdydVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTVGEDDLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCTTEKPPTWVEWRERPDSSNPSSADEPVSIPNGELQDQGGNGDVDVpepspsssNTEDANITTTGELSKSIDenpsskpsepsesgspsepaesgtpsepaesGTPSEPSESVDGNHPSSDPaatevvktvakaeGTPEVTKDDKDVVNEAEN
************PVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKF**************TLCSIT*****ALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTL****************RIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTAL**************RDYDVAALANNLSQAFRYGIYSN*****************YF*****EVVISSL**********LFTNSNWFAF**********************************************************************************************************************************************************************************************************************************
MFWR***LSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTL*****************VNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFT*****************RIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIY*********************Y********************************GSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHER*************************************************************************************************************************************************************************************************************************
*********TASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKF*********ANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTVGEDDL***********************************KPPTWVE*****************SIPNGELQD********************************************************************************************TVAKAEGTPEVTKDDKDVVNEAEN
MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFN***THGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLK***********RLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHE**************************************************************************************************************************************************************************************************************************
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTVGEDDLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCTTEKPPTWVEWRERPDSSNPSSADEPVSIPNGELQDQGGNGDVDVPEPSPSSSNTEDANITTTGELSKSIDENPSSKPSEPSESGSPSEPAESGTPSEPAESGTPSEPSESVDGNHPSSDPAATEVVKTVAKAEGTPEVTKDDKDVVNEAEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query813 2.2.26 [Sep-21-2011]
Q922D4844 Serine/threonine-protein yes no 0.621 0.598 0.301 2e-67
Q5F471873 Serine/threonine-protein yes no 0.623 0.580 0.301 1e-66
Q8R3Q2923 Serine/threonine-protein no no 0.541 0.476 0.317 4e-66
Q5H9R7873 Serine/threonine-protein yes no 0.622 0.579 0.293 8e-66
O75170 966 Serine/threonine-protein no no 0.541 0.455 0.318 3e-65
Q9UPN7881 Serine/threonine-protein no no 0.626 0.577 0.289 1e-64
Q7TSI3856 Serine/threonine-protein no no 0.623 0.592 0.293 2e-62
Q6NRF1850 Serine/threonine-protein N/A no 0.584 0.558 0.293 5e-60
Q6NRI0852 Serine/threonine-protein N/A no 0.584 0.557 0.293 1e-59
O74511838 Extragenic suppressor of yes no 0.420 0.408 0.264 3e-23
>sp|Q922D4|PP6R3_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Mus musculus GN=Ppp6r3 PE=1 SV=1 Back     alignment and function desciption
 Score =  257 bits (657), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/564 (30%), Positives = 301/564 (53%), Gaps = 59/564 (10%)

Query: 1   MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQ 60
           MFW+   L ++S ++T+L++E+ TL+EL+DE+D++QECKA N +LI FL +   +E L+ 
Sbjct: 1   MFWKF-DLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVS 59

Query: 61  YIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120
           +I+ E P+D +++  +K+P ++CE+ T +V  +   L EDE L+  L+SFL  +   + L
Sbjct: 60  FIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNESPLNPL 119

Query: 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTN 180
           LA +FSKV+  L+ RK   ++ ++K  ++ +  ++  IG ++IM++L+RL+   E     
Sbjct: 120 LASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPR 179

Query: 181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR------------SAPPAL 228
             + + W+ +  +++ +V+    S   + H+NA+++LC I R            + P  L
Sbjct: 180 -QDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPL 238

Query: 229 AAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTL-GTYYMFNRQLTHGS 287
            A +     I +L  +     + +S +V+++ I ++LL+ +R T  G   +    ++H S
Sbjct: 239 LATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMSH-S 297

Query: 288 TVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTV 347
             +VN   +E + GRLG   +LL    ++S + TT+G L PP+G  RL ++  IS LL  
Sbjct: 298 ACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQT 357

Query: 348 GSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC--KNAP--------- 396
            + +   +L+   ++  ILD+FF+Y +NNFLH  VE  I   L    +NA          
Sbjct: 358 NTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDS 417

Query: 397 -----LIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKL 451
                L++HL  +C L+ +ILEA       D+N+      GR   R G +GHLTRI+N +
Sbjct: 418 TGDNLLLKHLFQKCQLIERILEA------WDTNEKKQAEGGR---RHGYMGHLTRIANCI 468

Query: 452 IQ---LGNNNSEIHAYLQE-----NSEWNDWQINVL---SKRNTLE---NIYQWACGRPT 497
           +     G N++ +   +++        W  +  N L   +KRNT++   + YQ       
Sbjct: 469 VHSTDKGPNSALVQQLIKDLPDEVRERWETFCTNSLGETNKRNTVDLAFSDYQMQQMTSN 528

Query: 498 ALHDRG----RDSDDDDYQNRDYD 517
            +   G    + +D DD  N  +D
Sbjct: 529 FIDQFGFNDEKFADQDDIGNVSFD 552
Regulatory subunit of protein phosphatase 6 (PP6). May function as a scaffolding PP6 subunit. May have an important role in maintaining immune self-tolerance.
Mus musculus (taxid: 10090)
>sp|Q5F471|PP6R3_CHICK Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus GN=PPP6R3 PE=2 SV=1 Back     alignment and function description
>sp|Q8R3Q2|PP6R2_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Mus musculus GN=Ppp6r2 PE=1 SV=1 Back     alignment and function description
>sp|Q5H9R7|PP6R3_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens GN=PPP6R3 PE=1 SV=2 Back     alignment and function description
>sp|O75170|PP6R2_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Homo sapiens GN=PPP6R2 PE=1 SV=2 Back     alignment and function description
>sp|Q9UPN7|PP6R1_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 1 OS=Homo sapiens GN=PPP6R1 PE=1 SV=5 Back     alignment and function description
>sp|Q7TSI3|PP6R1_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 1 OS=Mus musculus GN=Ppp6r1 PE=1 SV=1 Back     alignment and function description
>sp|Q6NRF1|P6R3B_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-B OS=Xenopus laevis GN=ppp6r3-b PE=2 SV=1 Back     alignment and function description
>sp|Q6NRI0|P6R3A_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-A OS=Xenopus laevis GN=ppp6r3-a PE=2 SV=1 Back     alignment and function description
>sp|O74511|EKC1_SCHPO Extragenic suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ekc1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query813
255564407783 conserved hypothetical protein [Ricinus 0.954 0.991 0.742 0.0
359483671786 PREDICTED: serine/threonine-protein phos 0.949 0.982 0.741 0.0
297740815785 unnamed protein product [Vitis vinifera] 0.948 0.982 0.741 0.0
356532415881 PREDICTED: serine/threonine-protein phos 0.934 0.862 0.689 0.0
356558055838 PREDICTED: serine/threonine-protein phos 0.964 0.935 0.668 0.0
449433551769 PREDICTED: serine/threonine-protein phos 0.916 0.968 0.719 0.0
449490607772 PREDICTED: LOW QUALITY PROTEIN: serine/t 0.916 0.965 0.712 0.0
357448461794 Serine/threonine protein phosphatase 6 r 0.895 0.916 0.689 0.0
42562411811 SIT4 phosphatase-associated-like protein 0.971 0.974 0.647 0.0
334182957805 SIT4 phosphatase-associated-like protein 0.965 0.975 0.650 0.0
>gi|255564407|ref|XP_002523200.1| conserved hypothetical protein [Ricinus communis] gi|223537607|gb|EEF39231.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1155 bits (2989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/820 (74%), Positives = 673/820 (82%), Gaps = 44/820 (5%)

Query: 1   MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQ 60
           MFWRMAGLSTASPVETILDKENFTLEELLDED+IIQECKALNGRLINFLRERAQVEQLI+
Sbjct: 1   MFWRMAGLSTASPVETILDKENFTLEELLDEDEIIQECKALNGRLINFLRERAQVEQLIR 60

Query: 61  YIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120
           YI+ EAPEDAEKRRTFKFPF+ACEIFTCEVDIILKTLVEDEELMNLLFSFLEP  +HSTL
Sbjct: 61  YIIEEAPEDAEKRRTFKFPFIACEIFTCEVDIILKTLVEDEELMNLLFSFLEPTQTHSTL 120

Query: 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTN 180
           LAGYFSKVVICLLLRKT+P MHYIKAHQ+I+ +LVDLIGITSIMEVLIRLIGADEHMYT+
Sbjct: 121 LAGYFSKVVICLLLRKTIPFMHYIKAHQQILNQLVDLIGITSIMEVLIRLIGADEHMYTS 180

Query: 181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGR 240
           + ++MQWIE+T+VLEMIVDKFSSSDSPEVHAN AETLC+ITR APP LAAKISSPNFIGR
Sbjct: 181 YMDAMQWIEETDVLEMIVDKFSSSDSPEVHANTAETLCAITRFAPPGLAAKISSPNFIGR 240

Query: 241 LFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML 300
           LFRHALE SRPKSVLVNSLSICISLLDPKRLTLG+Y+ +NRQL HGSTVTV+PETVEGML
Sbjct: 241 LFRHALEESRPKSVLVNSLSICISLLDPKRLTLGSYHTYNRQLNHGSTVTVSPETVEGML 300

Query: 301 GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHG 360
             LGDLLKLLDV+S E+ LLTTYGKLQPPLGKHRLKIVEFISVLL+VGSEAAEKELI+ G
Sbjct: 301 DSLGDLLKLLDVASTENILLTTYGKLQPPLGKHRLKIVEFISVLLSVGSEAAEKELIQLG 360

Query: 361 AVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTL 420
           AV+RILDLFFEYPYNNFLHHHVENII SCLE K A LI+HLL ECNLVGKILEAEKN TL
Sbjct: 361 AVQRILDLFFEYPYNNFLHHHVENIIFSCLESKLAVLIQHLLRECNLVGKILEAEKNSTL 420

Query: 421 -KDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVL 479
             D+ KPT+PA+ R PPRIGNIGHLTRISNKLIQLGNNN +I A LQENSEW DW  NVL
Sbjct: 421 AADTGKPTLPADARPPPRIGNIGHLTRISNKLIQLGNNNGDILACLQENSEWTDWHANVL 480

Query: 480 SKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDV 539
           +KRN +EN+YQWACGRPTALH   RDSDDDDYQ+RDYDVAALANNLSQAFRYGIY NDDV
Sbjct: 481 TKRNAVENVYQWACGRPTALH-DRRDSDDDDYQDRDYDVAALANNLSQAFRYGIYGNDDV 539

Query: 540 DEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAG 599
           DE  GSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRV++ER+AG
Sbjct: 540 DEVHGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVANERSAG 599

Query: 600 SLASPSPNIEETGVTNGGGHDQVTVGE-DDLDDTATSAAVPVSKSEDSDVGKLPNDSVET 658
           +LAS SPN EE    +G G+D+V VGE DDLDDTATS+  P    +DS    L  DS E 
Sbjct: 600 ALASSSPNNEEPVFVDGAGNDEVMVGEDDDLDDTATSSPAPEPSLDDSSGNNLSEDSKEI 659

Query: 659 GSCTTEKPPTWVEWRERPDSSNPSSADEPVSIPNGELQ----DQGGNGDVDVPEPSPSSS 714
                EKP  WVEWRE PD+++P + D P  +PNGELQ    +QGG+GD  V +P  SS 
Sbjct: 660 --VGNEKPTVWVEWRETPDTNDPFNPDVP-PVPNGELQVDSENQGGDGDSAVADPVCSSD 716

Query: 715 NTEDANITTTGELSKSIDENPSSKPSEPSESGSPSEPAESGTPSEPAESGTPSEPSESVD 774
            T + +    G  + S D +P++ PS  SESGS +                PS P+E   
Sbjct: 717 ATVNDSNAVEGSPNASND-SPTTNPSTSSESGSEN----------------PSSPNE--- 756

Query: 775 GNHPSSDPAATEVVKTVAKAEGTPEVTKDD-KDVVNEAEN 813
                        VK   + E TP+  +D+ KD   +AEN
Sbjct: 757 -------------VKMTVETEETPKAHEDEQKDAAKQAEN 783

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483671|ref|XP_002281685.2| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740815|emb|CBI30997.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356532415|ref|XP_003534768.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356558055|ref|XP_003547324.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449433551|ref|XP_004134561.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449490607|ref|XP_004158654.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357448461|ref|XP_003594506.1| Serine/threonine protein phosphatase 6 regulatory subunit [Medicago truncatula] gi|355483554|gb|AES64757.1| Serine/threonine protein phosphatase 6 regulatory subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|42562411|ref|NP_174335.4| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana] gi|332193102|gb|AEE31223.1| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182957|ref|NP_001185116.1| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana] gi|332193104|gb|AEE31225.1| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query813
TAIR|locus:2028185811 AT1G30470 "AT1G30470" [Arabido 0.857 0.859 0.671 1.3e-251
TAIR|locus:2205185802 AT1G07990 "AT1G07990" [Arabido 0.825 0.836 0.558 5.9e-199
TAIR|locus:2057507788 AT2G28360 "AT2G28360" [Arabido 0.808 0.833 0.538 4.4e-187
MGI|MGI:1918724 923 Ppp6r2 "protein phosphatase 6, 0.474 0.418 0.302 2.4e-55
UNIPROTKB|O75170 966 PPP6R2 "Serine/threonine-prote 0.474 0.399 0.300 1.8e-53
ZFIN|ZDB-GENE-030131-3251902 ppp6r3 "protein phosphatase 6, 0.467 0.421 0.282 8.5e-52
UNIPROTKB|A7Z051873 SAPS3 "SAPS3 protein" [Bos tau 0.467 0.435 0.297 1.8e-50
UNIPROTKB|G3X7E2834 PPP6R2 "Uncharacterized protei 0.473 0.461 0.299 3.2e-50
UNIPROTKB|F1RMN3880 PPP6R1 "Uncharacterized protei 0.329 0.304 0.290 7.6e-50
MGI|MGI:2442163856 Ppp6r1 "protein phosphatase 6, 0.329 0.313 0.301 1.5e-49
TAIR|locus:2028185 AT1G30470 "AT1G30470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2423 (858.0 bits), Expect = 1.3e-251, P = 1.3e-251
 Identities = 478/712 (67%), Positives = 561/712 (78%)

Query:     1 MFWRMAGLSTASPVETILDKENFTXXXXXXXXXIIQECKALNGRLINFLRERAQVEQLIQ 60
             MFWRMAGLSTAS VE ILDK++FT         IIQECKALNGRL+NFLRE+ QVEQLI+
Sbjct:     1 MFWRMAGLSTASAVEAILDKDSFTLEDLLDEDEIIQECKALNGRLLNFLREKVQVEQLIR 60

Query:    61 YIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120
             YI+ E  ED EK+RTFKFPF+ACEIFTCE+++ILKTLVEDEELM LLFSFLE K++H++L
Sbjct:    61 YIIEEPLEDVEKKRTFKFPFIACEIFTCEIEMILKTLVEDEELMLLLFSFLEAKETHNSL 120

Query:   121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTN 180
             LAGYFSKVVICLL+RKT+P M +IK HQEI+ +LVDLIGITSIMEVL RL+G DEH+Y+N
Sbjct:   121 LAGYFSKVVICLLVRKTIPFMQFIKDHQEILKQLVDLIGITSIMEVLKRLVGTDEHLYSN 180

Query:   181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGR 240
             +T +MQWIEDT+VLEMIVDKF SS+SPEVHANAAE LC++ R APP LA K+SSP+  GR
Sbjct:   181 YTSAMQWIEDTDVLEMIVDKFGSSESPEVHANAAEILCTVARYAPPGLATKLSSPSCTGR 240

Query:   241 LFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMX 300
             L +H LE+SRPKSVLVNSLS+CISLLDPKR TLGTY+++ RQLTHGS VT NPETVEGM 
Sbjct:   241 LLKHTLEDSRPKSVLVNSLSVCISLLDPKRFTLGTYHIYGRQLTHGSMVT-NPETVEGML 299

Query:   301 XXXXXXXXXXXXXXXXXXXXTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHG 360
                                 TTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKE+IR G
Sbjct:   300 GSLGDLLMLLNVSSAEGVLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKEVIRLG 359

Query:   361 AVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTL 420
             AV+R+LDLFFEYPYNNFLHHHVEN+ILSC+E KN+ L++HLL ECNL+G ILEAEK+ TL
Sbjct:   360 AVKRVLDLFFEYPYNNFLHHHVENVILSCMESKNSQLVDHLLSECNLIGSILEAEKDSTL 419

Query:   421 K--DSNK--PTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQI 476
                DS+K  PTVPAEG+ P RIGNIGHLTRISNKL+QL N+N EI ++LQENS+W DWQ 
Sbjct:   420 TAGDSDKLQPTVPAEGKKPLRIGNIGHLTRISNKLLQLANSNVEIQSHLQENSKWVDWQT 479

Query:   477 NVLSKRNTLENIYQWACGRPTALHXXXXXXXXXXXXXXXXXVAALANNLSQAFRYGIYSN 536
             +VLSKRNTLEN+Y WACGRPT+LH                 VAALANNLSQAFRYGIYSN
Sbjct:   480 DVLSKRNTLENVYSWACGRPTSLHDRSRDSDDDDYHDRDYDVAALANNLSQAFRYGIYSN 539

Query:   537 DDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHER 596
             DD+DEAQGS+ERDDEDVYFDDESAEVVISSLRLGDDQES SLFTNSNWFAF+DD+ ++ER
Sbjct:   540 DDMDEAQGSMERDDEDVYFDDESAEVVISSLRLGDDQESDSLFTNSNWFAFDDDKAANER 599

Query:   597 AAGSLASPSPNIEETGVTNGGGHDQVTVGE-DDLDDTATSAAVPVSKSEDSDVGKLPNDS 655
             +  S ASPSPN +  G  +G   D V +GE D+ + TA S+  PV    +    K P+++
Sbjct:   600 SMTSAASPSPNAD--G--DGEDDDDVVIGEADEFNATAASSP-PVDMETEDSTSKHPSEN 654

Query:   656 VETGSCTTEKPPTWVEWRERPDSSNPSSA--DEPVSIPNGELQDQGGNGDVD 705
                     EK P WVEWRE  +S+ P S+  +E   + NG++Q +  + D D
Sbjct:   655 PSEPE--PEKSPAWVEWRETSESTAPPSSNPEETTILSNGDVQIEKEDNDDD 704
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2205185 AT1G07990 "AT1G07990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057507 AT2G28360 "AT2G28360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1918724 Ppp6r2 "protein phosphatase 6, regulatory subunit 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O75170 PPP6R2 "Serine/threonine-protein phosphatase 6 regulatory subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3251 ppp6r3 "protein phosphatase 6, regulatory subunit 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A7Z051 SAPS3 "SAPS3 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3X7E2 PPP6R2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RMN3 PPP6R1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2442163 Ppp6r1 "protein phosphatase 6, regulatory subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028415001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (790 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query813
pfam04499380 pfam04499, SAPS, SIT4 phosphatase-associated prote 3e-81
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 1e-08
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-05
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-04
pfam04652315 pfam04652, DUF605, Vta1 like 0.001
>gnl|CDD|218113 pfam04499, SAPS, SIT4 phosphatase-associated protein Back     alignment and domain information 
 Score =  264 bits (678), Expect = 3e-81
 Identities = 105/394 (26%), Positives = 183/394 (46%), Gaps = 48/394 (12%)

Query: 129 VICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWI 188
              LL RKT  ++ +I+  +  + + +  I   +IM++L++LI  ++      T  ++W+
Sbjct: 1   NENLLDRKTDEMLEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTEK--PELPTGIIEWL 58

Query: 189 EDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR------------SAPPALAAKISSPN 236
            +  ++  ++D  S     +V +NAA+ L +I                P  L  ++ S  
Sbjct: 59  NEQKLIPKLIDLLSPEYDSDVQSNAADFLKAIITISANQPLQLQSCIGPNELTRELVSEE 118

Query: 237 FIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETV 296
            + +L  + L+     S LVN + I I L+  K  +     ++    +H  +   +P  +
Sbjct: 119 SVEKLLDNMLDEEGNGSALVNGVGILIELIR-KNNSDYDEILYTTIESHPPS-ERDPIYL 176

Query: 297 EGMLG----RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLL------- 345
             +L      L D  +LL    ++  L TTYG L  PLG  R KIVE I+ LL       
Sbjct: 177 GSLLRLFSPHLPDFHQLLLNPPKKPLLTTTYGVLIEPLGFERFKIVELIAELLHCSNMGL 236

Query: 346 TVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL-----ECKNAPLIEH 400
               +  + EL+    +  ILDLFF+YP+NNFLH+ VE+I+   L        N+ L+  
Sbjct: 237 LNVGDYLKIELVDLKIIPTILDLFFKYPWNNFLHNVVEDIVQQILNGPMDSGYNSFLVVD 296

Query: 401 LLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSE 460
           L  +CNL  +ILE +     K+S++    A+G   PR+G +GHLT I+ ++++       
Sbjct: 297 LFTDCNLTQRILEGQ-----KESDE--FQAKGG--PRLGYMGHLTLIAEEVVKFSEKYPP 347

Query: 461 ------IHAYLQENSEWNDWQINVLSKRNTLENI 488
                 I   ++ N EW ++    L +     N+
Sbjct: 348 ELISPLIKEAVE-NEEWEEYVEETLEETRERYNV 380

This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes. Length = 380
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 813
KOG2073838 consensus SAP family cell cycle dependent phosphat 100.0
PF04499475 SAPS: SIT4 phosphatase-associated protein; InterPr 100.0
KOG2073838 consensus SAP family cell cycle dependent phosphat 99.11
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 92.69
PF04499475 SAPS: SIT4 phosphatase-associated protein; InterPr 91.62
PF05804708 KAP: Kinesin-associated protein (KAP) 86.58
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 85.38
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 83.78
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-111  Score=986.86  Aligned_cols=688  Identities=35%  Similarity=0.558  Sum_probs=590.2

Q ss_pred             CCccCCCCCCCChhhhhhcCCCCCHHHhhCCchHHHHHhhhchhHHHHhccHHHHHHHHHHhccCCCcchhhhhcccccc
Q 003519            1 MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPF   80 (813)
Q Consensus         1 MFWkf~g~~~~S~ID~LLdked~TLEeLLDEddlLQE~K~~N~KLIdFL~k~e~lekLI~YI~~e~~ed~e~k~~~Kyp~   80 (813)
                      |||+| ++.....++.+|+++.+||++||||++++||||.+|.||++||++|+++++|+.||++++++|.++|++||||+
T Consensus         1 ~f~~~-~~~~~~~~e~~l~~~~~~l~elldeed~~~e~~~~n~~l~~~l~~~e~~~~l~~~I~~e~~~d~D~k~~f~~p~   79 (838)
T KOG2073|consen    1 MFWDF-DLESSAEIELLLEKESDTLDELLDEEDILQECKLQNSKLLNFLKRPEVLEKLVEYIIEEPEEDADKKTRFKYPN   79 (838)
T ss_pred             Ccccc-ccchhHHHHHhcccchhHHHHhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhcCCCcccchhhhhcccc
Confidence            99999 68888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc
Q 003519           81 VACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI  160 (813)
Q Consensus        81 iAsEILssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgYFsKVv~~LL~rk~~eml~fLk~~~~~vd~LLkHI~~  160 (813)
                      |+||||||++|+|.++|++|+.+|.+||+||+++.|+|+++++||+|++++|+.||+.++|.||+++.++|+.||+||++
T Consensus        80 i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~pln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~hi~~  159 (838)
T KOG2073|consen   80 ISCEILTSDVWPISEALVEDESLLSLLYSILEHEPPLNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLKHIDI  159 (838)
T ss_pred             HHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHHcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccccccccchhhhHHHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhc-----CchhHHhhcCCh
Q 003519          161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS-----APPALAAKISSP  235 (813)
Q Consensus       161 ~~ImDlLlrLIt~de~~~~~~~~il~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~-----spn~L~~~L~S~  235 (813)
                      ++|||||+|+++|+++.++. +++++||+++++|+||+++++|+.++++|+||+++||+|+|+     +|++|+++|+||
T Consensus       160 stlMD~Llkli~~de~~~p~-~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~  238 (838)
T KOG2073|consen  160 STLMDFLLKLISTDEPESPR-TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESP  238 (838)
T ss_pred             cHHHHHHHHhccccCCCCch-HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCH
Confidence            99999999999999999864 999999999999999999999999999999999999999999     899999999999


Q ss_pred             HHHHHHHHHHhcCCCCcccccceeeeeeeccCccccccch--h-hhhhccccCCCccccCccchHHHHHhHHHHHHhhcc
Q 003519          236 NFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT--Y-YMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDV  312 (813)
Q Consensus       236 e~I~~Ll~~iL~~~~~~S~Lvn~lsIlI~LL~~~R~~~s~--y-~~~~~~l~~~~~~~~~Pe~l~~il~~L~~l~~LL~~  312 (813)
                      ++|+|||++||+++++++++|++|+|||++++++|.....  | ..+..+..+. ...+.+.++++|.+||++|++||..
T Consensus       239 e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L~dF~~lL~~  317 (838)
T KOG2073|consen  239 ETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSER-DPIVLNELLGAMEPRLGDFVQLLLE  317 (838)
T ss_pred             HHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCcccc-CccchHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999986543  3 3332222221 2234566789999999999999999


Q ss_pred             CccccccccccCcccCCCcchhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-
Q 003519          313 SSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE-  391 (813)
Q Consensus       313 ~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~LL~~~n~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile-  391 (813)
                      ++....++||||.++||||++||||||||++||||+++.+.++++..+++.+++|+||+|+||||||++|+.||..++. 
T Consensus       318 ~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~  397 (838)
T KOG2073|consen  318 PEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSD  397 (838)
T ss_pred             CccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhc
Confidence            9988899999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             --------CCChHHHHHHhhhcchHHHHHHHhhccccc--CCCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHhcC---C
Q 003519          392 --------CKNAPLIEHLLHECNLVGKILEAEKNFTLK--DSNKPTVPAEGRLPPRIGNIGHLTRIS-NKLIQLGN---N  457 (813)
Q Consensus       392 --------~~n~~Lv~~LF~~~~Li~rIlea~k~~~~~--~~nk~t~~~~gk~~~R~GYMGHLt~IA-N~Lv~~~~---~  457 (813)
                              +.+..++.|++++|+|+.+|+++++.....  ..++++..++|+...|.|||||++||| |.++++..   .
T Consensus       398 ~~~~~~~~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~~h~~R~~pn~~vq~~~~~~~  477 (838)
T KOG2073|consen  398 ETNNDSNISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPIGHLTRIAPNVGDQLKIKLED  477 (838)
T ss_pred             cccccccCCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCccceeeecCcchhhhccccccc
Confidence                    788999999999999999999998876543  234677778887557999999999999 99999643   6


Q ss_pred             cHHHHHHHh--cchhHHHHHHHHhh------hhhhhhhhhhccCC-CCcccCCCCCCCCcccccCCcchHHHHHhhhhhh
Q 003519          458 NSEIHAYLQ--ENSEWNDWQINVLS------KRNTLENIYQWACG-RPTALHDRGRDSDDDDYQNRDYDVAALANNLSQA  528 (813)
Q Consensus       458 ~~~I~~~Lq--~~~~W~~fv~~~L~------k~N~ienv~~~~~G-~p~~~~d~~~dsDddd~~d~d~d~~~~~~~l~qa  528 (813)
                      ...|+++|+  .+..|..|...++.      ++|.++++|.|.|| ++...+++-+..|++++.+++|++.+.+.++.++
T Consensus       478 ~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~~~~~~id~~~~~~e~~~~d~~~~~~~~~~~i~~~  557 (838)
T KOG2073|consen  478 TNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGYLTSNFIDLTRFNDEEEKADRDYDVMGHLDNIADH  557 (838)
T ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhhccHHHHhhhccccchhhccccccchhhhhHhhhh
Confidence            788999998  45789999888876      99999999999999 5999999999999988899999999999999998


Q ss_pred             -hhhccccCCchhhhccccccCCCccccCCCccceeeec---cccccccCCCcccc-cCCcccccccccccccccCCC--
Q 003519          529 -FRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISS---LRLGDDQESGSLFT-NSNWFAFEDDRVSHERAAGSL--  601 (813)
Q Consensus       529 -f~y~~~~~~d~~e~~~~~~~~~ed~~~~~~s~~~~~s~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--  601 (813)
                       |+|+++.+..+.+..+...+  +..|||||+++|++++   +||||++..+++++ |++|++|+|++....+..+..  
T Consensus       558 ~F~~~~de~~~~~e~~~~~~~--~~q~~~dE~~~~~l~~~~~~~lgd~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  635 (838)
T KOG2073|consen  558 NFSINIDENSPNAEDLEVEDR--LIQYFDDEKAETVLGAMGQLRLGDEDSEDSLKTWNGEELAGQDDKFDINDSEQDSYS  635 (838)
T ss_pred             hccccccccCchhhhhhhhcc--ccccccccchheeecccccccccchhhhhhhhccccccccccccccCCCcccccccc
Confidence             99999999999999988888  8999999999999999   99999999999998 999999999977777644442  


Q ss_pred             -CCCCCCccccC-CCCCCCCCceeeccC-CCccccccCCCCCCCCCCCCCCCCCCCCcccCCCC--CCCCCcceecccCC
Q 003519          602 -ASPSPNIEETG-VTNGGGHDQVTVGED-DLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCT--TEKPPTWVEWRERP  676 (813)
Q Consensus       602 -~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  676 (813)
                       -.-+++.+..+ .....+++..++|+- +...+.++-.. +...... ....++ .+..+|+.  +...|.|+.|.+++
T Consensus       636 ~~~D~e~~~t~n~~~~~~d~~~~~~~~~~~~~~~e~~~~~-~~~~~~~-~~~~~~-~~~~~p~~~~~~~~p~p~~~~~~~  712 (838)
T KOG2073|consen  636 GFFDVEEWETYNADEDNDDDTSSVIGEGGESPTGEPSWGE-DSDENGS-ADSTDG-TDEFTPDHPETENSPSPSKPPGSA  712 (838)
T ss_pred             cccccccccCCCCccccccchhhhhhhcCCCCCCcccccc-CCCCCcc-cccCCC-ccccCCCCCcccCCCCCCCCccch
Confidence             00011111111 112234445566664 33323233222 2222111 111111 11122222  25668999999998


Q ss_pred             CCCCCCCCCCCcccCCCcccccCCC
Q 003519          677 DSSNPSSADEPVSIPNGELQDQGGN  701 (813)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~  701 (813)
                      ....|..+     .|+|.+++.++.
T Consensus       713 ~~v~~~~~-----~~~~d~~s~~~~  732 (838)
T KOG2073|consen  713 EGVSPKAS-----EPNGDVSSLGEQ  732 (838)
T ss_pred             hccCCccc-----cccccccccccc
Confidence            87777653     348888774433

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein [] Back     alignment and domain information
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein [] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query813
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 81/497 (16%), Positives = 148/497 (29%), Gaps = 167/497 (33%)

Query: 1   MFWRMAGLSTASPVETILDKENFTLEELLDED---------DIIQECKALNGRLINFLRE 51
           +FW    L   +  ET+L+     L   +D +         +I     ++   L   L+ 
Sbjct: 184 IFW--LNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 52  RAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIF--TCEVDII--LKTLVEDEELMNLL 107
           +     L+   V+   ++A+    F     +C+I   T    +   L         ++  
Sbjct: 241 KPYENCLL---VLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 108 FSFLEPKDSHSTLLAGYFSKVVICL--LLRKTVPLMHYI--KAHQEIMARL-----VDLI 158
              L P +  S LL  Y       L   +  T P    I  ++ ++ +A       V+  
Sbjct: 295 SMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 159 GITSIMEVLIRLIGADE--HMYTN---FTE---------SMQWIE-DTNVLEMIVDKFSS 203
            +T+I+E  + ++   E   M+     F           S+ W +   + + ++V+K   
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 204 S--------------------------DSPEVHA------NAAETLCSITRSAPPALAAK 231
                                      +   +H       N  +T  S     PP L   
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-PPYLDQY 472

Query: 232 ISSPNFIGRLFRHALENSRP--KSVLVNSLSICISLLDPKRLTLGTYYMF-NRQLTHGST 288
             S   IG    H L+N     +  L   +      LD         + F  +++ H ST
Sbjct: 473 FYS--HIGH---H-LKNIEHPERMTLFRMV-----FLD---------FRFLEQKIRHDST 512

Query: 289 VTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVG 348
                       G + + L            L  Y                +I       
Sbjct: 513 AWNAS-------GSILNTL--QQ--------LKFYKP--------------YIC------ 535

Query: 349 SEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLV 408
               + +      V  ILD         FL    EN+I S          ++     +L+
Sbjct: 536 ----DNDPKYERLVNAILD---------FLPKIEENLICS----------KY----TDLL 568

Query: 409 GKILEAEKNFTLKDSNK 425
              L AE     ++++K
Sbjct: 569 RIALMAEDEAIFEEAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query813
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 92.56
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.56  E-value=0.22  Score=23.62  Aligned_cols=302  Identities=10%  Similarity=0.119  Sum_probs=142.7

Q ss_pred             HCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHC---CCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf             415889999998850379864665311554200254301---54379999851599889999850199999992335529
Q 003519           49 LRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFT---CEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYF  125 (813)
Q Consensus        49 L~k~e~iekLI~YIi~e~~ed~e~k~~~Kyp~iAsEILs---sdv~~I~d~Lvede~lL~~L~sFL~~~~plnpllAgYF  125 (813)
                      +.+-..+..|++++-...  +.+    .  ...|+.+|+   +........+++ ...+..|..+|..+.   +...-+-
T Consensus        52 i~~~g~i~~Lv~lL~~~~--~~~----v--~~~a~~~L~~la~~~~~~~~~i~~-~~~i~~l~~~L~~~~---~~~~~~a  119 (434)
T d1q1sc_          52 IIRAGLIPKFVSFLGKTD--CSP----I--QFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLASPH---AHISEQA  119 (434)
T ss_dssp             HHHTTCHHHHHHHTTCGG--GHH----H--HHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCSC---HHHHHHH
T ss_pred             HHHCCCHHHHHHHHCCCC--CHH----H--HHHHHHHHHHHHCCCHHHHHHHHH-CCCHHHHHHCCCCCC---HHHHHHH
T ss_conf             998889999999874699--889----9--999999999986398551047664-463156664035687---9999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999941914599999973679999997319317-------999999982245656555033679975545999999
Q 003519          126 SKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITS-------IMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIV  198 (813)
Q Consensus       126 sKVv~~LL~rk~~e~l~fLk~~~~iid~LLkHI~~~~-------ImDlLlrLI~~de~~~~~~~~il~WL~eq~LIerLI  198 (813)
                      .+++..+..... ..-..+... +.+..+++.+....       ....+...+...-..   ...........++++.|+
T Consensus       120 ~~~L~nl~~~~~-~~~~~i~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~l~  194 (434)
T d1q1sc_         120 VWALGNIAGDGS-AFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN---KNPAPPLDAVEQILPTLV  194 (434)
T ss_dssp             HHHHHHHHTTCH-HHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCC---CTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCH-HHHHHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
T ss_conf             999998850016-899999986-300589999872232100189999999999888642---642211443656999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHH
Q ss_conf             84099998679982999999999519436884207948999999999528998520001023234145854445550232
Q 003519          199 DKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYM  278 (813)
Q Consensus       199 ~~L~~s~s~evh~NaaeiL~eIIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~isIlIsLL~~~R~~~s~y~~  278 (813)
                      ..+. +.++++..+++..|+.+.... ......+.....+..|+..+-...  .....+++.++-.+..           
T Consensus       195 ~ll~-~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~Lv~ll~~~~--~~~~~~al~~l~~l~~-----------  259 (434)
T d1q1sc_         195 RLLH-HNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVVPQLVKLLGATE--LPIVTPALRAIGNIVT-----------  259 (434)
T ss_dssp             HHTT-CSCHHHHHHHHHHHHHHTSSC-HHHHHHHHTTTCHHHHHHHHTCSC--HHHHHHHHHHHHHHTT-----------
T ss_pred             HHHH-CCCCCHHHHHHHHHCCCCHHH-HHHHHHHHHCCCCHHCCCCCCCCH--HHHHHCHHHHHHHHHH-----------
T ss_conf             9985-244201256776640220123-456777763154201000023430--6554021221356776-----------


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             10012578743459120688997--2798998611585533111344754688841147899999999820939999999
Q 003519          279 FNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKEL  356 (813)
Q Consensus       279 ~~~~l~~~s~~~~~Pe~i~~il~--~L~dl~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~LL~~~n~~i~~eL  356 (813)
                                  .+++....++.  -+..+..+|..+.                ...|..++..+..|.... ......+
T Consensus       260 ------------~~~~~~~~~~~~~~~~~l~~ll~~~~----------------~~v~~~a~~~L~~l~~~~-~~~~~~i  310 (434)
T d1q1sc_         260 ------------GTDEQTQKVIDAGALAVFPSLLTNPK----------------TNIQKEATWTMSNITAGR-QDQIQQV  310 (434)
T ss_dssp             ------------SCHHHHHHHHHTTGGGGHHHHTTCSS----------------HHHHHHHHHHHHHHTTSC-HHHHHHH
T ss_pred             ------------HHHHHHHHHHHCCCCCHHHHHHCCCC----------------HHHHHHHHHHHHHHCCCC-CHHHHHH
T ss_conf             ------------66677899985256405777613641----------------466688887886520045-0457777


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             9953599999998625788046999999999974079968999996106427999997
Q 003519          357 IRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEA  414 (813)
Q Consensus       357 i~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~iles~n~~Li~~Lf~~c~Li~rIlea  414 (813)
                      .+.++++.++.++....  .-.......++..+....+...+..+. +.++++.+++-
T Consensus       311 ~~~~~i~~li~~l~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~l~-~~~~i~~L~~l  365 (434)
T d1q1sc_         311 VNHGLVPFLVGVLSKAD--FKTQKEAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNL  365 (434)
T ss_dssp             HHTTCHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHSCHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHCCCHHHHHHHH-HCCCHHHHHHH
T ss_conf             66546899998775158--688999999999998349999999999-89769999998