Citrus Sinensis ID: 003567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810
Protein Sequence
MFEYERSALTLPKVFSRAGNSKEIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFLNAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPTLHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVELGLPGQVPNLFEADHMEANPLSTYGQTNDDAGNICTLEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWTTVEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDELKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGLSLLLNSPNEAKHDHLPSPEPETSVTPDYLANASAACPVESVENVQLPSPATVSDPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVKDFSGNQKVSDQVLMQGGSTQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQLAAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVSNGCKSHERNTNGVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKENRTHEHQS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccEEEEEEcccEEEccccccccEEEEccccccccccccccEEEEEcccccEEEEEcccccEEEccEEcccccccccccccEEEEcccEEEEEEcHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEEEccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEcccccccccccccccccccccccccHHHHHHHccccccccccEEEEccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEcccccEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccEEEEEEEccEEEEEccccccEEEEEcccccccccEEHHEEEEEEcccccEEEEEccccEEEEccEEcccccEEEEccccEEEEccEEEEEEEcHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MFEYERsaltlpkvfsragnskeiklssgkrkaeSVRSCYYALRKRihnepfnsidlsflnapgnrnfygngdeppsrncmlgdpmanhfglqdsnldvmhrkfpdipmdddascrdgptlhrfhggfdhpgeedfsmqqgemheeiphifeenqsfrgngarvvelglpgqvpnlfeadhmeanplstygqtnddagnictlegnqvfrspipdcgapfqdlefssplpempiwttvedsssptitvddsfrekdlhsgdnyalpddsgakdksapgydfvhgnsklKMQMSCDElkneasntEGYLEELSNSLlnftndeeflfmdvdgkemidkSYYDGLSLLlnspneakhdhlpspepetsvtpdylanasaacpvesvenvqlpspatvsdpqfpeqndgimictlntedpeipcnddaflpnnllpssvSIAKrqnfkdagnpfsssvkdfsgnqkvsdqvlmqggstqmvgsqvipgshkhhpvgdsgvkfelhscnssqlaagtscrgsiqnnsmntskdsLQCARLKQDNKEIAMVKDLghtltdsslkkpnfvsngcksherntngvkqeldypaitqeshalnvevgslhipdaepimnpsttepedpsvesddddvpyfsDIEAMILdmdldpddqgiYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGrhskhyikkpevllgratedvvvdidlgregrtnkISRRQAMINMDEAgsfhlknlgkcpilvnnkevpprqsqglgssclieIRGLAFIFETNQTCVKRYLDSIMKEnrthehqs
Flexible Loop (DISEMBL)
mfeyersaltlpkvfsragnskeiklssgkrkaesVRSCYYALRKRIHNEPFNSIDLSFLNAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPTLHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVELGLPGQVPNLFEADHMEANPLSTYGQTNDDAGNICTLEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWttvedsssptitVDDSFREKDLHSgdnyalpddsgakdkSAPGYDFVHGNSKLKMQMSCDELKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGLSLLLNSPNEAKHDHLPSPEPETSVTPDYLANASAACPVESVENVQLPSPATVSDPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVKDFSGNQKVSDQVLMQGGSTQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQLAAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLghtltdsslkkpnFVSNGCKSHERNTNGVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDLDPDDQGIYEQEvskyqhedtRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKpevllgratedvvvdidlgregrtnkisrrQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKENRTHEHQS
Low Complexity Region (SEG)
MFEYERSALTLPKVFSRAGNSKEIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFLNAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPTLHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVELGLPGQVPNLFEADHMEANPLSTYGQTNDDAGNICTLEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWTTVEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDELKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGLSLLLNSPNEAKHDHLPSPEPETSVTPDYLANASAACPVESVENVQLPSPATVSDPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVKDFSGNQKVSDQVLMQGGSTQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQLAAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVSNGCKSHERNTNGVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTepedpsvesddddvpYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKENRTHEHQS
Disordered region (IsUnstruct)
***********************************VRSCYYALRKRIHNEPFNSIDLSFLNAPGNRNFY*******************************************************************************************GARVVELGLPGQVPNLFEA**********YGQTNDDAGNICTLEGNQVFRSPIPDCGAPFQDLEF*******PIWT***********************************************************************LEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGLSLLL**********************************************************GIMICTLNTEDPEIPCNDDAFLPN*********************************************************************************************************************************************************************************************************YFSDIEAMILDMDLD***QGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRT*******AMINMDEAGSFHLKNLGKCPILVNNK********GLGSSCLIEIRGLAFIFETNQTCVKRYLDSI***********
Disordered Region (DISOPRED)
**********************************SVRSCYYALRKRIHNEPFNSIDLSFLNAPGNRNFYGNGDEPP*******DPMANHFGLQDSNLDVMHRKFPDIPMD*****************************************EENQ***************************************************************************************************************DDSGAKDKS*********************************EELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGLSLL******************************************************PEQNDGIMICTLNTEDPEIPCNDDAFL******************************************************************************************************S***********************************************************************************************************MILDM*LDPDDQGIYEQ*****************************LSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCV******************
Disordered Region (DISEMBL)
MFEYERSALTLPKVFSRAGNS**************VRSCYYALRKRIHNEPFNSIDLSFLNAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPTLHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVELGLPGQVPNLFEADHMEANPLSTYGQTNDDAGNICTLEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWTTVEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDELKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGLSLLLNSPNE**************VTPDYLANASAACPVESVENVQLPSPATVSDPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVKDFSGNQKVSDQVLMQGGSTQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQLAAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVSNGCKSHERNTNGVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNP*************DDDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKE********
Disordered Region (DISPRO)
********LTLPKVFSR*GNSKEIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFLNAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPTLHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVELGLPGQVPNLFEADHMEANPLSTYGQTNDDAGNICTLEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWTTVEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDELKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGLSLLLNSPNEAK**********TSVTPDYLANASAACPVESVENVQLPSPATVSDPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIA*****************************************************************************************************************LTDSSLKKPNFVS****************LDYPAIT**************************************DDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKE********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFEYERSALTLPKVFSRAGNSKEIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFLNAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPTLHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVELGLPGQVPNLFEADHMEANPLSTYGQTNDDAGNICTLEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWTTVEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSxxxxxxxxxxxxxxxxxxxxxLLNFTNDEEFLFMDVDGKEMIDKSYYDGLSLLLNSPNEAKHDHLPSPEPETSVTPDYLANASAACPVESVENVQLPSPATVSDPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVKDFSGNQKVSDQVLMQGGSTQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQLAAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVSNGCKSHERNTNGVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKENRTHEHQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	810	2.2.26 [Sep-21-2011]
Q99L90	462	Microspherule protein 1 O	yes	no	0.203	0.357	0.32	7e-16
Q96EZ8	462	Microspherule protein 1 O	yes	no	0.203	0.357	0.314	2e-15
P40466	484	Fork head protein homolog	yes	no	0.117	0.196	0.324	0.0005

>sp|Q99L90|MCRS1_MOUSE Microspherule protein 1 OS=Mus musculus GN=Mcrs1 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 10/175 (5%)

Query: 627 DDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY--MQRAIL 684
           D V  FSD E +I D  L      + E E++       +R I +LEQ  H +  +  +I 
Sbjct: 276 DQVLNFSDAEDLIDDSKLKDMRDEVLEHELTVADRRQ-KREIRQLEQELHKWQVLVDSIT 334

Query: 685 SHGA-------FAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMI 737
             G+        A+L GR  ++ ++  E+ LGRAT+D  +D+DL  EG   KISR+Q +I
Sbjct: 335 GMGSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVI 394

Query: 738 NMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCV 792
            +   G F + N G+ PI ++ + V       L ++ ++EI  L F+F  NQ  +
Sbjct: 395 KLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLI 449

Modulates the transcription repressor activity of DAXX by recruiting it to the nucleolus. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Putative regulatory component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. May also be an inhibitor of TERT telomerase activity.
Mus musculus (taxid: 10090)

>sp|Q96EZ8|MCRS1_HUMAN Microspherule protein 1 OS=Homo sapiens GN=MCRS1 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 10/175 (5%)

Query: 627 DDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY-------- 678
           D V  FSD E +I D  L      + E E+        +R I +LEQ  H +        
Sbjct: 276 DQVLNFSDAEDLIDDSKLKDMRDEVLEHELMVADRRQ-KREIRQLEQELHKWQVLVDSIT 334

Query: 679 -MQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMI 737
            M      +   A+L GR  ++ ++  E+ LGRAT+D  +D+DL  EG   KISR+Q +I
Sbjct: 335 GMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVI 394

Query: 738 NMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCV 792
            +   G F + N G+ PI ++ + V       L ++ ++EI  L F+F  NQ  +
Sbjct: 395 KLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLI 449

Modulates the transcription repressor activity of DAXX by recruiting it to the nucleolus. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Putative regulatory component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. May also be an inhibitor of TERT telomerase activity.

Homo sapiens (taxid: 9606)

>sp|P40466|FKH1_YEAST Fork head protein homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FKH1 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 19/114 (16%)

Query: 688 AFAILYGRHSKHYIKKPEVLLGRATED---------VV---VDIDLGREGRTNKISRRQA 735
           A+A + G    +Y++K EV +GR T+          VV   +DIDL   G    +SR+ A
Sbjct: 58  AYAKIAGCDWTYYVQKLEVTIGRNTDSLNLNAVPGTVVKKNIDIDL---GPAKIVSRKHA 114

Query: 736 MINMD-EAGSFHLKNLGKCPILVNNKEVPP---RQSQGLGSSCLIEIRGLAFIF 785
            I  + E+GS+ L+  G+    VN + +P         L S C+I+I G+  IF
Sbjct: 115 AIRFNLESGSWELQIFGRNGAKVNFRRIPTGPDSPPTVLQSGCIIDIGGVQMIF 168

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	810
359492711	1030	PREDICTED: uncharacterized protein LOC10	0.959	0.754	0.527	0.0
302142589	789	unnamed protein product [Vitis vinifera]	0.869	0.892	0.510	0.0
255538816	776	conserved hypothetical protein [Ricinus	0.670	0.699	0.533	1e-154
449438524	870	PREDICTED: uncharacterized protein LOC10	0.953	0.887	0.438	1e-146
356509648	841	PREDICTED: uncharacterized protein LOC10	0.912	0.878	0.395	1e-135
357466877	845	Microspherule protein [Medicago truncatu	0.877	0.841	0.368	1e-126
356518000	841	PREDICTED: uncharacterized protein LOC10	0.902	0.869	0.397	1e-126
224082944	733	predicted protein [Populus trichocarpa]	0.606	0.669	0.482	1e-118
297735058	819	unnamed protein product [Vitis vinifera]	0.869	0.859	0.374	1e-116
224066050	728	predicted protein [Populus trichocarpa]	0.602	0.670	0.461	1e-114

>gi|359492711|ref|XP_002280739.2| PREDICTED: uncharacterized protein LOC100254089 [Vitis vinifera]

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/825 (52%), Positives = 544/825 (65%), Gaps = 48/825 (5%)

Query: 1    MFEYERSALTLPKVFSRAGNSKEIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFL 60
            M E+ERSA TLP  F+R GNSKE K   GKRKAE++RSCYYALRKRI NEPFNS+DLSFL
Sbjct: 210  MIEFERSASTLPSKFNRFGNSKENKCVPGKRKAETIRSCYYALRKRICNEPFNSMDLSFL 269

Query: 61   NAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPT 120
             AP N N  GNGDEP S N ML DP++NHF  Q+ +LD+MH  FP +  D+ A+   G +
Sbjct: 270  VAPSNSNCVGNGDEPVSPNYMLEDPISNHFRTQEPSLDIMHCAFPQMVTDNAAASGAGTS 329

Query: 121  LHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVELGLPGQV--PNLFE 178
             H FH    +P +ED  ++Q  +H+EIP I  EN    GN + + ELG P ++   NLFE
Sbjct: 330  AHGFHAAVQNPVKEDLPIEQNSIHKEIPQILGENLPHTGNCSGIDELGEPKELLACNLFE 389

Query: 179  ADHMEANPLSTYGQTNDDAGNICT-LEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWTT 237
            AD +EA P ST+   N D GN+C+   GNQ F  P  DCGA F +L +SSPLP MPIW T
Sbjct: 390  ADDLEAKPPSTFDLINSDLGNVCSEFGGNQAFDLPGSDCGASFDNLGYSSPLPGMPIWDT 449

Query: 238  VEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDEL 297
            VE  S+P + VD S  +KD H+ D +ALP+D  AK  S  GYD V   +KLK  M CD+L
Sbjct: 450  VEGISAPDLPVDTSLGKKDHHTEDTFALPNDGHAKINSVSGYDVVPSETKLKNSMPCDQL 509

Query: 298  KNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGL-SLLLNSPNEAKHD 356
             N  S+ +GYL ELSNSLL+F NDE  LFMDVDGK++IDKSYYDGL SLLL+SP ++  D
Sbjct: 510  NN--SSPDGYLAELSNSLLDFPNDE-LLFMDVDGKDIIDKSYYDGLNSLLLSSPTDSNQD 566

Query: 357  HLPS-PEPETSVTPD-YLANASAACPVE-----SVE--------NVQLPSPATVSD--PQ 399
            H+P   EPE SV PD YL     AC  E     S+         N + P  +T  D  PQ
Sbjct: 567  HVPDITEPEASVGPDAYLVIPQGACAGELDNNGSIHCGDGHADCNPEAPMLSTAVDLNPQ 626

Query: 400  FPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVKDFS 459
            FPE  +G++ C LNTEDP+IPCNDD FLPN +  S +S A + +F +A NP SS+VKDF+
Sbjct: 627  FPEMCNGVICCALNTEDPDIPCNDDVFLPNQIPLSPLSSAAQLSFHEANNPTSSAVKDFT 686

Query: 460  GNQKVSDQV-------LMQGG----STQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQ 508
             NQK S++        L   G    S++M GSQ +     +HPVGD  +KFEL   +S+ 
Sbjct: 687  DNQKSSERCPSLLKRELKSPGQSHVSSRMKGSQALSKIGLNHPVGDCDIKFELTESDSTH 746

Query: 509  LA---AGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVS 565
            +A   AG  C G+   N +N    +     LK++ KEI   + + +  TDS ++KP    
Sbjct: 747  MASRSAGLVC-GNSSLNPVNVKAHTPLPKMLKEETKEIKPARQMSYNSTDSFMEKPVHGF 805

Query: 566  NGCKSH-ERNTNGVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTEPEDPSVES 624
            +G +S+ + N  G+KQE+D  +  Q   AL+           +P++NPS+ + E+  +ES
Sbjct: 806  DGFRSYPQTNACGIKQEVDAISTAQNHQALDFAA-------LDPVVNPSSPDQEEQPIES 858

Query: 625  DDDDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAIL 684
            DDD +PY SDIEAMILDMDLDPDDQ     EVS+YQ+E+T+RAIIRLEQG HSYMQR I 
Sbjct: 859  DDD-IPYVSDIEAMILDMDLDPDDQEYCRGEVSRYQYENTKRAIIRLEQGFHSYMQRTIA 917

Query: 685  SHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGS 744
            +HGAFA+LYGRHSKHYIKKPEVLLGRATEDV VDIDLGREG  NKISRRQA+I M+  GS
Sbjct: 918  THGAFAVLYGRHSKHYIKKPEVLLGRATEDVTVDIDLGREGCANKISRRQAIIKMERGGS 977

Query: 745  FHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQ 789
            F LKNLGK  IL+N K+V P +S  L   CLIEIRG+ FIFETNQ
Sbjct: 978  FSLKNLGKRAILMNGKDVAPGESVSLTCGCLIEIRGMPFIFETNQ 1022

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142589|emb|CBI19792.3| unnamed protein product [Vitis vinifera]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/795 (51%), Positives = 502/795 (63%), Gaps = 91/795 (11%)

Query: 1   MFEYERSALTLPKVFSRAGNSKEIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFL 60
           M E+ERSA TLP  F+R GNSKE K   GKRKAE++RSCYYALRKRI NEPFNS+DLSFL
Sbjct: 72  MIEFERSASTLPSKFNRFGNSKENKCVPGKRKAETIRSCYYALRKRICNEPFNSMDLSFL 131

Query: 61  NAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPT 120
            AP N N  GNGDEP S N ML DP++NHF  Q+ +LD+MH  FP +  D+ A+   G +
Sbjct: 132 VAPSNSNCVGNGDEPVSPNYMLEDPISNHFRTQEPSLDIMHCAFPQMVTDNAAASGAGTS 191

Query: 121 LHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVELGLPGQV--PNLFE 178
            H FH                     IP I  EN    GN + + ELG P ++   NLFE
Sbjct: 192 AHGFHAA-------------------IPQILGENLPHTGNCSGIDELGEPKELLACNLFE 232

Query: 179 ADHMEANPLSTYGQTNDDAGNICT-LEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWTT 237
           AD +EA P ST+   N D GN+C+   GNQ F  P  DCGA F +L +SSPLP MPIW T
Sbjct: 233 ADDLEAKPPSTFDLINSDLGNVCSEFGGNQAFDLPGSDCGASFDNLGYSSPLPGMPIWDT 292

Query: 238 VEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDEL 297
           VE  S+P + VD S  +KD H+ D +ALP+D  AK  S  GYD V   +KLK  M CD+L
Sbjct: 293 VEGISAPDLPVDTSLGKKDHHTEDTFALPNDGHAKINSVSGYDVVPSETKLKNSMPCDQL 352

Query: 298 KNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGL-SLLLNSPNEAKHD 356
            N  S+ +GYL ELSNSLL+F NDE  LFMDVDGK++IDKSYYDGL SLLL+SP ++  D
Sbjct: 353 NN--SSPDGYLAELSNSLLDFPNDE-LLFMDVDGKDIIDKSYYDGLNSLLLSSPTDSNQD 409

Query: 357 HLPS-PEPETSVTPDYLANASAACPVESVENVQLPSPATVSDPQFPEQNDGIMICTLNTE 415
           H+P   EPE SV PD    A    P E+     + S A   +PQFPE  +G++ C LNTE
Sbjct: 410 HVPDITEPEASVGPD----AYLVIPQEA----PMLSTAVDLNPQFPEMCNGVICCALNTE 461

Query: 416 DPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVKDFSGNQKVSDQVLMQGGST 475
           DP+IPCNDD FLPN +  S +S A + +F +A NP SS+VKDF+ NQK            
Sbjct: 462 DPDIPCNDDVFLPNQIPLSPLSSAAQLSFHEANNPTSSAVKDFTDNQK------------ 509

Query: 476 QMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQLAAGTSCRGSIQNNSMNTSKDSLQCAR 535
                           +GD  +KFEL   +S+ +A+                    + A 
Sbjct: 510 ---------------SIGDCDIKFELTESDSTHMAS--------------------RSAG 534

Query: 536 LKQDNKEIAMVKDLGHTLTDSSLKKPNFVSNGCKSH-ERNTNGVKQELDYPAITQESHAL 594
           L   N +I   + + +  TDS ++KP    +G +S+ + N  G+KQE+D  +  Q   AL
Sbjct: 535 LVCGNSKIKPARQMSYNSTDSFMEKPVHGFDGFRSYPQTNACGIKQEVDAISTAQNHQAL 594

Query: 595 NVEVGSLHIPDAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDLDPDDQGIYEQ 654
           +           +P++NPS+ + E+  +ESDDD +PY SDIEAMILDMDLDPDDQ     
Sbjct: 595 DFAA-------LDPVVNPSSPDQEEQPIESDDD-IPYVSDIEAMILDMDLDPDDQEYCRG 646

Query: 655 EVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATED 714
           EVS+YQ+E+T+RAIIRLEQG HSYMQR I +HGAFA+LYGRHSKHYIKKPEVLLGRATED
Sbjct: 647 EVSRYQYENTKRAIIRLEQGFHSYMQRTIATHGAFAVLYGRHSKHYIKKPEVLLGRATED 706

Query: 715 VVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSC 774
           V VDIDLGREG  NKISRRQA+I M+  GSF LKNLGK  IL+N K+V P +S  L   C
Sbjct: 707 VTVDIDLGREGCANKISRRQAIIKMERGGSFSLKNLGKRAILMNGKDVAPGESVSLTCGC 766

Query: 775 LIEIRGLAFIFETNQ 789
           LIEIRG+ FIFETNQ
Sbjct: 767 LIEIRGMPFIFETNQ 781

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538816|ref|XP_002510473.1| conserved hypothetical protein [Ricinus communis] gi|223551174|gb|EEF52660.1| conserved hypothetical protein [Ricinus communis]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 302/566 (53%), Positives = 387/566 (68%), Gaps = 23/566 (4%)

Query: 261 DNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDELKNEASNTEGYLEELSNSLLNFTN 320
           D ++LP +   K+     YD VHG S LK+++  +E+KN  ++TEGYL ELSNSLLNFTN
Sbjct: 216 DTFSLPCNDDTKNTCLSEYD-VHGESSLKLEIPSEEMKNVNASTEGYLAELSNSLLNFTN 274

Query: 321 DEEFLFMDVDGKEMIDKSYYDGLS-LLLNSPNEAKHDHLPS-PEPETSVTPDYLANASAA 378
           +EE LF DVDGK+ IDKSYYDGLS LLLNSPN+   + +P   EP++S+TPDY+ N   A
Sbjct: 275 EEELLFTDVDGKDAIDKSYYDGLSSLLLNSPNDISQERMPDITEPDSSLTPDYIVNQCGA 334

Query: 379 CPVESVENVQLPSPATV--SDPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSV 436
              E  E+    +   +  S+ Q PE    ++ICTLNTEDPEIPCNDD    N+L P S 
Sbjct: 335 SHGELDEDRGSDTGDVIGHSEVQLPELCVEVIICTLNTEDPEIPCNDDIVFTNHLRPKSF 394

Query: 437 SIAKRQNFKDAGNPFSSSVKDFSGNQKVSDQ--VLMQGG---------STQMVGSQVIPG 485
           S   R+NF+D+G   SS+VK+FS N K S+   +L+Q           S+QM+ SQV P 
Sbjct: 395 SSVARRNFQDSGKSNSSTVKEFSNNPKTSEGGPILVQRDVVNPGQSHLSSQMIRSQVKPE 454

Query: 486 SHKHHPVGDSGVKFELHSCNSSQLAAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAM 545
              HHPVGD G KF+L S + + +  G +  GS +N SM      L  A+ K++  E+  
Sbjct: 455 IGSHHPVGDHGNKFDLPSSSFTHMNKGIAYGGSSKNGSMEI----LVAAKPKEETPEVVP 510

Query: 546 VKDLGHTLTDSSLKKPNFVSNGCKSHER-NTNGVKQELDYPAITQESHALNVEVGSLHIP 604
           VK   H   DSS++KP F  +  K H   +  G+KQ+ D PA  Q     + ++ S    
Sbjct: 511 VKHFNHNSVDSSIEKPVFGPDSYKCHAHTDACGLKQDPDAPARIQNHQPAHAKLVSAENA 570

Query: 605 DAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDLDPDDQGIY-EQEVSKYQHED 663
            +E ++N   ++PE+P +ESDDD +PYFSDIEAMILDMDLDP+DQ +Y  +EVS+YQHED
Sbjct: 571 ASEQVVNYPVSDPEEPPIESDDD-IPYFSDIEAMILDMDLDPEDQDLYLSEEVSRYQHED 629

Query: 664 TRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGR 723
           T+R I+RLEQGA SYMQRAI   GAFA+LYGR SKHYIKK EVLLGRATEDV+VDIDLGR
Sbjct: 630 TKRVIMRLEQGAQSYMQRAIALQGAFAVLYGRRSKHYIKKSEVLLGRATEDVIVDIDLGR 689

Query: 724 EGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAF 783
           EGR NK+SR+QA IN+D++GSFHLKN+GKC I VN+KE+ P QS  L SSCLIEIRG+ F
Sbjct: 690 EGRANKVSRKQATINLDKSGSFHLKNIGKCSISVNDKEMAPGQSLSLTSSCLIEIRGMPF 749

Query: 784 IFETNQTCVKRYLDSIMKENRTHEHQ 809
           IFETNQ CVK+YLD  M++N+T  HQ
Sbjct: 750 IFETNQACVKQYLDGTMQKNQTQVHQ 775

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438524|ref|XP_004137038.1| PREDICTED: uncharacterized protein LOC101220419 [Cucumis sativus] gi|449479124|ref|XP_004155512.1| PREDICTED: uncharacterized LOC101220419 [Cucumis sativus]

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 369/841 (43%), Positives = 493/841 (58%), Gaps = 69/841 (8%)

Query: 1   MFEYERSALTLPKVFSRAGNSKEIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFL 60
           M ++ERS+  LP  F++ GN KE K   GKRK  +VR  YY LR+RI NEPFN +DL FL
Sbjct: 68  MIDFERSS-PLPSKFNKFGNPKETKCIGGKRKYGTVRRRYYTLRRRICNEPFNPMDLGFL 126

Query: 61  NAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMD-DDASCRDGP 119
             P + N+    +EP S NC+   P ++ FGLQ S L ++   F    M+ DDA      
Sbjct: 127 VGPSDSNY--GVEEPISGNCI--PPTSDGFGLQGSELGILQCNFAQNGMNTDDAE----- 177

Query: 120 TLHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVEL----GLPGQVPN 175
             H FH    H  E+ FS       E I HI  E+     N + V E+    G P  V +
Sbjct: 178 --HTFHSECQHTVEKHFSRSLENGQEGISHIMGESLPLSANESHVEEMAPSAGFP--VHS 233

Query: 176 LFEADHMEANPLSTYGQ-TNDDAGNICTLEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPI 234
           LF+ D +E    ST+GQ +ND       LE N VF SP+ D GA F ++E+SSPLP MPI
Sbjct: 234 LFDND-LEVRH-STFGQLSNDQRAMGSELEDNDVFNSPVSDSGASFHNVEYSSPLPGMPI 291

Query: 235 WTTVEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKD---KSAPGYDFVHGNSKLKMQ 291
           W    ++S+P + +D  F +KD+  GD++ LPDD G K+       GYD  H + KLK++
Sbjct: 292 W---RNASAPALPIDVGFADKDMPIGDSFDLPDDDGNKNIQNARLAGYD-AHSDLKLKIE 347

Query: 292 MSCDELKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGLS-LLLNSP 350
           +  D LK+  +  E    ELSNSLLN +N++E LFMDVDGK++IDKSYYDGLS LLLNSP
Sbjct: 348 VQHDHLKSPNATAEVDFAELSNSLLNLSNEDELLFMDVDGKDVIDKSYYDGLSSLLLNSP 407

Query: 351 NEAKHDHLPSP-EPETSVTPDYLANASAACPVESVE-------------NVQLPSPATVS 396
           NE  HD   +    ET    D L +   AC  +  E             +   PSP+   
Sbjct: 408 NEVNHDQTTTGINAETGWPTDALVDPPTACSGKLYEKESHGGVGHLDCSSEAHPSPSASL 467

Query: 397 DPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVK 456
             Q P + +  + C LNTEDPEIP NDD FLP  L P          F+D+     SS K
Sbjct: 468 GSQCPGKGNEPLFCALNTEDPEIPSNDDVFLPP-LTPMG------SQFQDST---FSSTK 517

Query: 457 DFSGNQKVSDQ---VLMQGGSTQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQLAAGT 513
           DF+ ++K  +    V  +    Q       P   + H VG + V       N ++L+ G 
Sbjct: 518 DFTYDEKSGETQYLVRERKNHGQPRALHGFPERVEKHLVGGASV-------NLNKLSHGN 570

Query: 514 SCRGSIQNN--SMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVSNGCKSH 571
           S   S  NN  S+N + D++Q    K++N EI+ V  LG    ++ ++KP F S+  + +
Sbjct: 571 SRHLSPVNNISSINVNSDAIQPVVFKEENNEISRVNHLGQNFLNAHVEKPGFDSDNVRRY 630

Query: 572 ERNTN-GVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTEPEDPSVESDDDDVP 630
             +   G+KQE D  A T + H L+ E G+  +  AE     ST++ +D      +DD+P
Sbjct: 631 TPSAACGIKQEPDILA-TLKDHRLSQEEGTQGVFCAEQDGISSTSDQDDLLSIDSEDDIP 689

Query: 631 YFSDIEAMILDMDLDPDDQGIYE-QEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAF 689
           +FSDIEAMILDMDLDP+DQ +Y  +EV KYQH +TR++IIRLEQGA++  QR+I SHGA 
Sbjct: 690 HFSDIEAMILDMDLDPEDQELYSSEEVLKYQHVETRKSIIRLEQGANACTQRSIASHGAL 749

Query: 690 AILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKN 749
           A+L+GRHS+H+IKK EVLLGRATEDV+VDIDLGREG  NKISRRQA+I +D+ G F LKN
Sbjct: 750 AVLHGRHSRHFIKKSEVLLGRATEDVIVDIDLGREGSGNKISRRQAIIKIDQDGFFSLKN 809

Query: 750 LGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKENRTHEHQ 809
           LGKC I +N+K+V P     L S C+IEIR + FIFE+NQTC+K+YLD+I K +   E Q
Sbjct: 810 LGKCSISINSKDVAPGHCLRLNSGCIIEIRAMRFIFESNQTCMKQYLDNIGKMSHKQEFQ 869

Query: 810 S 810
           S
Sbjct: 870 S 870

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509648|ref|XP_003523558.1| PREDICTED: uncharacterized protein LOC100786493 [Glycine max]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 332/839 (39%), Positives = 459/839 (54%), Gaps = 100/839 (11%)

Query: 1   MFEYERSALTLPKVFSRAGNSKEIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFL 60
           M  +E SA  LP  F R G+ KE K+ S  RK+ESVR+ YYA  KRI N    S+DLSFL
Sbjct: 68  MTNFELSASPLPSKFYRFGHLKERKVVSATRKSESVRNLYYARCKRIRNSMLTSMDLSFL 127

Query: 61  NAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPT 120
               N N+  +G +P S NCM     +NHF    S+LD     FP+  MDD+ +  D   
Sbjct: 128 VDSENGNYAVHGSDPLSGNCMPEGGTSNHF----SSLDPAQYAFPENLMDDNVAS-DRVA 182

Query: 121 LHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVE-LGLPGQ--VPNLF 177
              F  G D+  EE+F ++   + +E P IFE+N    G    VVE L +P +  +    
Sbjct: 183 AGVFCHGVDNAVEENFPVELKSVLKEEPQIFEDNVPLDG----VVEDLDVPNELAIDGWI 238

Query: 178 EADHMEANPLSTYGQTNDDAGNIC-TLEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWT 236
             D +E  PLST    N+D GN+C   + N VF S + +CG  F      S L EMP+W 
Sbjct: 239 GDDGLERMPLSTLDHINNDPGNMCPEFDENNVFDSEL-ECGTSFN----LSSLHEMPVWR 293

Query: 237 TVEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDE 296
           T           D+S +E +L                                    CD 
Sbjct: 294 T-----------DESIQEHNL-----------------------------------PCDG 307

Query: 297 LKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGL-SLLLNSPNEAKH 355
             +  +  + YLEELSNSLL+F+++EE + MDVDG E IDKSY+DGL SLL NS N+   
Sbjct: 308 FNDPIACGDAYLEELSNSLLHFSSEEEQILMDVDGDEGIDKSYFDGLTSLLQNSTNDINS 367

Query: 356 DHLPSPEPETSVTPD--YLANASAACPVESVEN---------------VQLPSPATVSDP 398
           D +   +   S+     ++ N S +C  E  +N                Q+ S  + +DP
Sbjct: 368 DQISKKDETESLMASQAHVINQSVSCHKELDDNSGSSSRGLQVVHKLEFQMSSSVSTTDP 427

Query: 399 QFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVKDF 458
           QFPE  +  M C++NTE  EIP NDD FLP ++ P     + +  FK +  P SSSV   
Sbjct: 428 QFPELINESMPCSINTEHQEIPENDDVFLPFDVPPVIFPPSSKLIFKVSNKPISSSVIKH 487

Query: 459 SGNQKVSDQVLMQGG-------STQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQLAA 511
             +++    + ++         S QM+ S   PG     PVG S VK EL + +++   +
Sbjct: 488 RASERGKTLMHVEKKNPAAPYVSFQMMESPCFPG-----PVGGSKVKCELPANHAAHTVS 542

Query: 512 GTS--CRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVSNGCK 569
            +S    G +  N    + D+L  A  K++   I + KD  + + +S +KK    S   +
Sbjct: 543 RSSVIVSGGLGGNDAANTTDALLHANKKEEATSICLAKDPSNHVANSFMKKSAADSKDFR 602

Query: 570 SHER-NTNGVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTEPEDPSVESDDDD 628
           +H + N + +K E D P   Q+      E+GS  + ++E + NP   + E+  +ES DD+
Sbjct: 603 NHPQPNGSSMKNEQDLPLPLQDHQLQRAELGSSDVLESELVANPPALDEEEQYIES-DDE 661

Query: 629 VPYFSDIEAMILDMDLDPDDQ--GIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSH 686
           +P +SD+EAM+LDMDLDP D     Y +EVS+YQH +++RAI+RLEQG+HS +QRAI SH
Sbjct: 662 LPSYSDVEAMVLDMDLDPHDHQDSYYNEEVSRYQHVESKRAIMRLEQGSHSCIQRAIDSH 721

Query: 687 GAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFH 746
           GAFAILY RHSKHYIKKPEVLLGRATE V VDIDLG+ G  N ISRRQA+I M + G+F+
Sbjct: 722 GAFAILYSRHSKHYIKKPEVLLGRATESVPVDIDLGKGGHGNAISRRQAIIKMAKDGTFY 781

Query: 747 LKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKENRT 805
           +KN GK  ILVN+KEV   QSQ L S+CL+E+RG+  IFE NQ+ VK+YLD I   ++T
Sbjct: 782 IKNFGKSSILVNSKEVHTGQSQRLHSNCLVEVRGMPLIFEINQSRVKQYLDYISDHSQT 840

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466877|ref|XP_003603723.1| Microspherule protein [Medicago truncatula] gi|355492771|gb|AES73974.1| Microspherule protein [Medicago truncatula]

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 315/854 (36%), Positives = 443/854 (51%), Gaps = 143/854 (16%)

Query: 3   EYERSALTLPKVFSRAGNSK-EIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFLN 61
           ++E S   LP  F +  + K E K  S KRK  +VR+ YYA+RKRI  +   S+D +FL 
Sbjct: 73  DFEHSVSPLPSKFFKIEHLKDEQKDVSVKRKVHTVRNSYYAMRKRIRRDMQTSMDYNFLV 132

Query: 62  APGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPTL 121
              N N+  NG+EP   NC+L    +N F    SN D  H   P+  MD D     G   
Sbjct: 133 DSENDNYAVNGNEPLPENCVLEGSTSNDF----SNHDPSHYGLPENFMDVDI----GVAA 184

Query: 122 HRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARV---VELGLPGQVPNLFE 178
             F+ G D   EE+F M Q  + EE P I E+N    G        +EL     +     
Sbjct: 185 QAFYTGVDDTLEENFPMDQNNISEEEPQIHEDNVLLNGTAEEFGDSIEL----DIEKFIG 240

Query: 179 ADHMEANPLSTYGQTNDDAGNICT-LEGNQVFRSPIPDCGAPFQDLEFSSP-LPEMPIWT 236
            D ++    S + Q N+D  N+C+  + + +F SP  +CG  F DLE S P + +MP+W 
Sbjct: 241 DDELDDMSFSAFHQINNDPANLCSEFDEDYMFDSPELECGNSFDDLELSLPDIQDMPVWR 300

Query: 237 TVEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDE 296
           T E  + P                                                 CD 
Sbjct: 301 TEEQDNIP-------------------------------------------------CDG 311

Query: 297 LKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGL-SLLLNSPNEAKH 355
            K+  +  +GYLEELSNSLLNFT +EE   MD  GK+ I KSYYDGL SLLLNSP +   
Sbjct: 312 SKDSIACEDGYLEELSNSLLNFTGEEELFLMDSVGKDGIGKSYYDGLSSLLLNSPIDGCS 371

Query: 356 DHLP-SPEPETSVTP-DYLANASAACPVESVENV-------------------------- 387
           + +P + E E  +TP + + N S +C  E  +N                           
Sbjct: 372 NQIPETAEVELLLTPHEDVKNPSVSCRTEVDDNAGKAETELLAAFDAHVKGMSVSCRAEV 431

Query: 388 -------------------QLPSPATVSDPQFPEQNDGIMICTLNTEDPEIPCNDDAFLP 428
                              Q+ + A+  DPQFPE  +G++ C +NTEDPE+P NDD FLP
Sbjct: 432 DDNTMSQSNGMEVVQKPEFQMAASASAKDPQFPELINGVVPCIINTEDPEVPSNDDVFLP 491

Query: 429 NNLLPSSVSIAKRQNFKDAGNPFSSSVKDFSGNQKVSDQVLMQGGSTQMVGSQVIPGSHK 488
            N  P ++S +     +          K   G Q           S+Q  G+  +PG   
Sbjct: 492 FNEPPPTISCSSESASRRGKVLMQVEQKSSVGAQV----------SSQTTGAHCLPG--- 538

Query: 489 HHPVGDSGVKFEL------HSCNSSQLAAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKE 542
             PV  S +K+EL      H  + + + A +   G+  N++ N +  +L  A  K+   +
Sbjct: 539 --PVSGSKIKYELSNNHASHRLSRNAIIASSDLGGN--NDATNKTHAALH-ASPKEKPVD 593

Query: 543 IAMVKDLGHTLTDSSLKKPNFVSNGCKSHER-NTNGVKQELDYPAITQESHALNVEVGSL 601
           ++ VK   + +T+ S KKP  + NG ++H + N + +KQE D     + +   + EVGS 
Sbjct: 594 VSFVKHQSNNVTNLSHKKPA-LGNGLRNHGQPNGSSLKQERDVALPVENNQLQHAEVGSA 652

Query: 602 HIPDAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDLDPDDQGIYE-QEVSKYQ 660
            +   E ++     + E+  +ES DD+VPY+SD+EAM+LDMDL+PDD  +Y+ +EVS+YQ
Sbjct: 653 DVLGPEMVVYSERLDEEEQYIES-DDEVPYYSDVEAMVLDMDLEPDDHDLYDNEEVSRYQ 711

Query: 661 HEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDID 720
           HE+T+RAIIRLEQGAHSYMQRA+ SHGA A+LYGRHSK+YIKK EVL+GR+TE   VDID
Sbjct: 712 HEETKRAIIRLEQGAHSYMQRAMASHGALALLYGRHSKYYIKKTEVLVGRSTEGFHVDID 771

Query: 721 LGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRG 780
           LG+ G  N ISRRQA+I MD+ GSF +KN+G+  +L+N+ E+   QSQ L S+ LIE++G
Sbjct: 772 LGKGGCANLISRRQAIIKMDKDGSFFIKNIGRSSMLINSTELHTGQSQRLLSNYLIELKG 831

Query: 781 LAFIFETNQTCVKR 794
             FIFE NQ+ +KR
Sbjct: 832 TQFIFEINQSGMKR 845

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518000|ref|XP_003527672.1| PREDICTED: uncharacterized protein LOC100803683 [Glycine max]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 332/835 (39%), Positives = 451/835 (54%), Gaps = 104/835 (12%)

Query: 1   MFEYERSALTLPKVFSRAGNSKEIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFL 60
           M   E SAL LP  F R G+SKE K+ S  RK++SVR+ YYA RKRI N    S+DLSFL
Sbjct: 68  MTNLELSALPLPSKFYRFGHSKERKVVSATRKSDSVRNLYYARRKRIRNSMLTSMDLSFL 127

Query: 61  NAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPT 120
               N N+  +G +P S NCM     +NHF    S+LD     FP+  MDD+ +  D   
Sbjct: 128 VDSENGNYAAHGSDPLSGNCMPEGGTSNHF----SSLDPSQYAFPENVMDDNVAS-DRVA 182

Query: 121 LHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVE-LGLPGQ--VPNLF 177
              F  G D    E+F  +   + +E P IFE N    G    VVE L +P +  +    
Sbjct: 183 AGVFCHGVDKAVAENFPAKLKSVLKEEPQIFEGNMPLDG----VVEDLDVPNELAIDGWI 238

Query: 178 EADHMEANPLSTYGQTNDDAGNIC-TLEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWT 236
             D +E  PLS     N+D GN+C   + N VF S + +CG  F      S  PEM +W 
Sbjct: 239 GDDGLERMPLSALNHINNDPGNMCPEFDENNVFDSEL-ECGTSFN----LSSRPEMSVWG 293

Query: 237 TVEDSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDE 296
           T           D+S +E DL                                    CD 
Sbjct: 294 T-----------DESIQEHDL-----------------------------------PCDG 307

Query: 297 LKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGL-SLLLNSPNEAKH 355
             +  +  + YLEELSNSLL+F+++EE + MDVDG+E I+KSY+ GL SLL NS N+   
Sbjct: 308 FSDPIACGDAYLEELSNSLLHFSSEEEQILMDVDGEEGIEKSYFGGLTSLLQNSTNDVNS 367

Query: 356 DHLPSPEPETSVTPD--YLANASAACPVESVENV---------------QLPSPATVSDP 398
           D +   +   S+     ++ N S +C  E  +N+               Q+ S    +DP
Sbjct: 368 DQISEKDETESLMASQAHVINQSVSCHKELDDNLGSSSSGLQVVPKLEFQMSSSVAATDP 427

Query: 399 QFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVKDF 458
           QFP+  +  M C++NTE  EIP NDD FLP ++ P     + +  FK +  P SSSV   
Sbjct: 428 QFPDLINESMSCSINTEHQEIPENDDVFLPFDVPPVIFPPSSKLIFKVSNKPISSSVIKH 487

Query: 459 SGNQKVSDQVLMQ---------GGSTQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQL 509
             +++   + LM            S QM+ S   PG     PVG S V+ EL + ++   
Sbjct: 488 RDSER--GKTLMHVEKKDSVESHASFQMMESPCFPG-----PVGGSKVECELPANHAPHT 540

Query: 510 AAGTS--CRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVSNG 567
            + +S    G +  N    + D+   A  K++   + + KD  + + +S +KK    S  
Sbjct: 541 VSRSSVTVSGGLGGNEAANTTDAFLHANKKEEATNVGLAKDPNNHVANSFMKKSAVDSKD 600

Query: 568 CKSHER-NTNGVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTEPEDPSVESDD 626
            ++H + N   +K E D     Q+      E+GS  + ++E + NP T + E+  +ES D
Sbjct: 601 FRNHPQPNGFSMKTEQDLALPLQDYQLQRAELGSSDVLESELVANPPTLDEEEQYIES-D 659

Query: 627 DDVPYFSDIEAMILDMDLDPDDQ--GIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAIL 684
           +++P +SD+EAM+LDMDLDPDD     Y +EVS+YQH +++RAI+RLE GAHS +QRAI 
Sbjct: 660 EELPSYSDVEAMLLDMDLDPDDHQDSYYNEEVSRYQHVESKRAIMRLELGAHSCIQRAID 719

Query: 685 SHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGS 744
           SHGAFAILY RHSKHYIKKPEVLLGRATE V VDIDLG+ G  N ISRRQA+I MD+ GS
Sbjct: 720 SHGAFAILYSRHSKHYIKKPEVLLGRATEGVPVDIDLGKGGHGNAISRRQAIIKMDKDGS 779

Query: 745 FHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSI 799
           F++KNLGK PILVNNKEV   QSQ L S CLIE+RG+  IFE NQ+ VK+Y+D I
Sbjct: 780 FYIKNLGKSPILVNNKEVHTGQSQRLHSDCLIEVRGMPLIFEINQSRVKQYVDHI 834

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082944|ref|XP_002306902.1| predicted protein [Populus trichocarpa] gi|222856351|gb|EEE93898.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/543 (48%), Positives = 340/543 (62%), Gaps = 52/543 (9%)

Query: 279 YDFVHGNSKLKMQMSCDELKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKS 338
           YD +H +SKL+M+M  D  +N + +TE +L EL+N L   +NDEE   +DVDGK+     
Sbjct: 228 YDDLHEDSKLQMEMLTDVPQNSSHSTEDFLAELTNYL---SNDEEGSGVDVDGKDFSTDP 284

Query: 339 YYDGL-SLLLNSPNEAKHDHLPS-PEPETSVTPDYLANASAACPVESVENVQLPSPATVS 396
           Y   L ++LL+SPN     H+PS  EPE+S++ D+   +  +  V     +Q  S  +V 
Sbjct: 285 YIACLNTILLSSPNSENEKHMPSVTEPESSISADW---SHYSVDVVCNSEMQFVSSTSVL 341

Query: 397 DPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVK 456
           DP  PE  DG++ C LN+ED EIPCN D   P    PSS +    ++ +DAG P S  VK
Sbjct: 342 DPH-PEVKDGVICCVLNSEDTEIPCNGDILFPTEWHPSSAASLASRSSQDAGKPNSLFVK 400

Query: 457 DFSGNQKVSDQVLMQ---------GGSTQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSS 507
           +   N+K    V++            S+QM   QV+P     HP GD  +KFEL S  ++
Sbjct: 401 ELISNKKSGVPVVVHRDLDNPRQPRASSQMTRLQVMPERGLLHPAGDHVLKFELPSSEAT 460

Query: 508 -QLAAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVSN 566
            +  AG S  GS Q NS +T  ++L                            K +FVS+
Sbjct: 461 HRGGAGFSSGGSTQFNSADTEMETL----------------------------KLDFVSD 492

Query: 567 GCKSHERNTNGVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTEPEDPSVESDD 626
                + N + VKQ  D PA  Q   A +++VGS  I  +E + N S ++P +P ++S D
Sbjct: 493 CFTYPQTNVSAVKQAEDAPAGVQNHQASHMKVGSSDIAASELVENHSISDPAEPPIQS-D 551

Query: 627 DDVPYFSDIEAMILDMDLDPDDQGIY-EQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILS 685
           DDVPYFSDIEAMILDMDLDP DQ +Y  +EVS+YQHED +RAIIRLEQGA SYMQR+I S
Sbjct: 552 DDVPYFSDIEAMILDMDLDPQDQDLYCSEEVSRYQHEDMKRAIIRLEQGARSYMQRSIAS 611

Query: 686 HGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSF 745
           HGAFA++YGRHSKHYIKKPEVLLGRATEDV VDIDLGREGR NKISRRQA I +D++GSF
Sbjct: 612 HGAFAVMYGRHSKHYIKKPEVLLGRATEDVTVDIDLGREGRANKISRRQATIYLDKSGSF 671

Query: 746 HLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKENRT 805
           +LKNLGKC + VN+KE+ P +S  L S CLIEIRG+ FIFE NQTCVK+YL    ++N+T
Sbjct: 672 YLKNLGKCSLSVNDKEIAPGRSLSLSSGCLIEIRGMPFIFEINQTCVKQYL---AQKNQT 728

Query: 806 HEH 808
            EH
Sbjct: 729 QEH 731

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735058|emb|CBI17420.3| unnamed protein product [Vitis vinifera]

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 314/838 (37%), Positives = 421/838 (50%), Gaps = 134/838 (15%)

Query: 1   MFEYERSALTLPKVFSRAGNSKEIKLSSGKRKAESVRSCYYALRKRIHNEPFNSIDLSFL 60
           M ++E SA       +R+GN KE     GKRK ES+R  Y+A+RKRIHN P  + D    
Sbjct: 70  MVQFEPSASNYSFKSNRSGNCKENVEVLGKRKVESIRRKYHAMRKRIHNVP--NADGYMC 127

Query: 61  NAPGNRNFYGNGDEPPSRNCMLGDPMANHFGLQDSNLDVMHRKFPDIPMDDDASCRDGPT 120
           N  G        +EPP  +  LGD + +HFGLQD           ++P D          
Sbjct: 128 NGGGCEEHIVLDNEPPVGSYALGDRVLSHFGLQD-----------NVPQD---------- 166

Query: 121 LHRFHGGFDHPGEEDFSMQQGEMHEEIPHIFEENQSFRGNGARVVELGLPGQVPNLFEAD 180
                                     IPHI  +N    GN +   + GLP +  NLF  +
Sbjct: 167 --------------------------IPHIIGDNLVDFGNCSGFEDRGLPDR--NLFNNN 198

Query: 181 HMEANPLSTYGQTNDDAGNICT-LEGNQVFRSPIPDCGAPFQDLEFSSPLPEMPIWTTVE 239
             E  PLST    N + GN+ +   G Q   SP+ D  A    + F SPLP +P+W T+E
Sbjct: 199 DFERKPLSTLDSLNTNLGNVGSEFGGGQHCESPVSDGSASLHQMGFPSPLPRVPLWKTIE 258

Query: 240 DSSSPTITVDDSFREKDLHSGDNYALPDDSGAKDKSAPGYDFVHGNSKLKMQMSCDELKN 299
           D S+P + ++ +  ++ + + +   L   +      + GY  VH    LK   +C  L N
Sbjct: 259 DISAPVMPINVNLGDRTVSAEETLTLAAAADGNKPCSSGYA-VHSQPTLKD--TCVGLNN 315

Query: 300 EASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKSYYDGL-SLLLNSPNEAKHDHL 358
             + T+G   +LS+SLLNF+++ E LFM+ DGK+ +DKS  D L S+LL+SPNE   D +
Sbjct: 316 STAITDGEFADLSDSLLNFSDENELLFMEADGKDPMDKSCLDNLDSVLLSSPNEVHVDDM 375

Query: 359 PS-PEPETSVTPDYLANASAACPVESV-----------------ENVQLPSPATVSDPQF 400
            +  +PET ++   +    +ACP E V                   V +PS   +S+P  
Sbjct: 376 ANISDPETLISGTSIVIHGSACPAELVVSADPLQSSHSNQEGVHSEVTMPSSTLISNPHS 435

Query: 401 PEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNP-FSSSVKDFS 459
            E  +G+M CTLNTED EIP NDD FLP     ++  I     F++A  P FSS +    
Sbjct: 436 SELQEGVMYCTLNTEDSEIPYNDDNFLPATFASTTQPI-----FEEACEPAFSSDI---- 486

Query: 460 GNQKVSDQV--LMQG--------GSTQMVGSQVIPGSHKHHPVGDSGVKFELHSCNSSQL 509
             QK S+Q   LM           + QM+G   +P     H     G + EL        
Sbjct: 487 --QKDSEQAPSLMNKDKNPAPSFKAPQMIGKDRMPEIVPDHQFIGYGNRSEL-------- 536

Query: 510 AAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVSNGCK 569
            +G +C                  A   +    I +V     +   S+   PN V +G  
Sbjct: 537 -SGDNC-----------------LATASRHFNSIPVVP----SHHSSAHATPNSVMDGAP 574

Query: 570 SHERNTNGVK-QELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTEPEDPSVESDDDD 628
              R    VK +E + P    E   L+   GS  +   EPI +  + + E  S    DDD
Sbjct: 575 G--RGVLNVKSREKEAPGTYGEHLFLHAGSGSTKMNFLEPINSLMSDQEESES----DDD 628

Query: 629 VPYFSDIEAMILDMDLDPDDQGIY-EQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHG 687
           VPYFSDIEAMIL+MDL P+DQ  Y   +VS+YQHED R+ IIRLEQ A S MQRAI S  
Sbjct: 629 VPYFSDIEAMILEMDLCPEDQDSYIGSKVSRYQHEDARKVIIRLEQCAQSSMQRAIASQC 688

Query: 688 AFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHL 747
           A AI YGRH KHYIKK EV+LGRAT ++ VDIDL +EGR NKISRRQA+I M   GSF L
Sbjct: 689 ALAIFYGRHLKHYIKKAEVILGRATNEIDVDIDLSKEGRANKISRRQAIIRMQGDGSFLL 748

Query: 748 KNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKENRT 805
           KNLGK  IL+N +EV   Q  GL SS LIEIRG+ F+FE NQ  V+RYL ++ K+ + 
Sbjct: 749 KNLGKNVILLNGQEVATGQVGGLSSSSLIEIRGMRFVFEVNQKSVRRYLANVAKKGQV 806

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066050|ref|XP_002302003.1| predicted protein [Populus trichocarpa] gi|222843729|gb|EEE81276.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/542 (46%), Positives = 327/542 (60%), Gaps = 54/542 (9%)

Query: 279 YDFVHGNSKLKMQMSCDELKNEASNTEGYLEELSNSLLNFTNDEEFLFMDVDGKEMIDKS 338
           +D +  +S+LKM++  D  +N + +TE +L EL+N L   +NDEE   +D+DGK+    S
Sbjct: 227 FDDLQKDSELKMEILSDVPQNSSHSTEDFLAELTNYL---SNDEEGASVDMDGKDFSTNS 283

Query: 339 YYDGL-SLLLNSPNEAKHDHLPS-PEPETSVTPDYLANASAACPVESVENVQLPSPATVS 396
           Y   L ++LL+SPN +  +H P+  EPE S++ D   N S ACP    EN    S  +V 
Sbjct: 284 YIACLNTILLDSPNNSNENHRPNVTEPEASISADCSKNHSGACPGNLWEN--RGSHCSVD 341

Query: 397 DPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQNFKDAGNPFSSSVK 456
               PE  DGI+ C LNTED EIP NDD  LP +  P SV+   ++NF+ AG P S S K
Sbjct: 342 ADPHPEVKDGIICCVLNTEDTEIPFNDDIDLPTDWRPRSVTSLVQRNFQHAGKPNSLSAK 401

Query: 457 DFSGNQ------KVSDQVLMQGG----STQMVGSQVIPGSHKHHPVGDSGVKFELHSCNS 506
           +   N+       V+ + L   G    S+QMV  Q +P     HPVGD  +K EL S +S
Sbjct: 402 ELPSNKIGSVVSVVAHRDLENPGQLLASSQMVRLQAMPEPGPVHPVGDHSLKLELPSSDS 461

Query: 507 SQLAAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPNFVSN 566
           ++ +AG +  GS Q NS +T  ++L   +LK++  E  M K + +   DS L+KP+ VS+
Sbjct: 462 TRRSAGFAFGGSTQFNSADTKMETLVPTKLKEETTETPMAKHMSNESADSLLEKPSLVSD 521

Query: 567 GCKSHERNTNGVKQELDYPAITQESHALNVEVGSLHIPDAEPIMNPSTTEPEDPSVESDD 626
                + N + +KQ  D P   Q                             +  V   D
Sbjct: 522 FFTYPQTNVSAIKQVEDAPDRVQ-----------------------------NHQVSHSD 552

Query: 627 DDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSH 686
           DDVPYFSDIEAM+    +  D        VS+Y+HEDT+RAI+RLEQGAHSYMQRAI  H
Sbjct: 553 DDVPYFSDIEAMVTVYCIQTD--------VSRYRHEDTKRAIMRLEQGAHSYMQRAIARH 604

Query: 687 GAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFH 746
           GAFA+++GRHSKHYIKK EVLLGRATED +VDIDLGREGR N ISRRQA IN+D++GSF+
Sbjct: 605 GAFAVIHGRHSKHYIKKSEVLLGRATEDAIVDIDLGREGRRNIISRRQATINLDKSGSFY 664

Query: 747 LKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMKENRTH 806
           LKNLGKC + VN+KE+ P QS  L S CLIEIRG+ FIFE NQTCVK YL    +EN+T 
Sbjct: 665 LKNLGKCSLSVNDKEIAPGQSLSLTSGCLIEIRGMPFIFEINQTCVKHYLARKTQENQTW 724

Query: 807 EH 808
           EH
Sbjct: 725 EH 726

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	810
TAIR|locus:2096174	702	emb1967 "AT3G54350" [Arabidops	0.492	0.568	0.442	7.1e-103
TAIR|locus:2005644	555	AT1G75530 "AT1G75530" [Arabido	0.208	0.304	0.582	1.1e-53
TAIR|locus:2036621	525	AT1G60700 "AT1G60700" [Arabido	0.198	0.306	0.442	7.7e-27
UNIPROTKB|E2R2M5	271	MCRS1 "Uncharacterized protein	0.196	0.586	0.321	5.8e-15
UNIPROTKB|Q7Z372	271	DKFZp686N07218 "Putative uncha	0.196	0.586	0.321	9.5e-15
RGD|1311607	462	Mcrs1 "microspherule protein 1	0.196	0.344	0.321	5.1e-13
MGI|MGI:1858420	462	Mcrs1 "microspherule protein 1	0.196	0.344	0.327	8.5e-13
UNIPROTKB|H9KYV0	458	MCRS1 "Uncharacterized protein	0.197	0.349	0.311	1.1e-12
UNIPROTKB|Q08E44	462	MCRS1 "Uncharacterized protein	0.196	0.344	0.321	1.1e-12
UNIPROTKB|G3V9E0	462	Mcrs1 "Protein Mcrs1" [Rattus	0.196	0.344	0.321	1.1e-12

TAIR|locus:2096174 emb1967 "AT3G54350" [Arabidopsis thaliana (taxid:3702)]

 Score = 789 (282.8 bits), Expect = 7.1e-103, Sum P(3) = 7.1e-103
 Identities = 188/425 (44%), Positives = 254/425 (59%)

Query:   385 ENVQLPSPATVS-DPQFPEQNDGIMICTLNTEDPEIPCNDDAFLPNNLLPSSVSIAKRQN 443
             ++V L    T++ DP  PE   G++ C LN EDP+IPCNDD FL NN  P SVS   R+N
Sbjct:   298 DHVMLELDGTIALDPH-PEIVGGVICCLLNEEDPDIPCNDDIFLSNNSRPMSVSSLARRN 356

Query:   444 FKDAGNPFSSSVKDFSGNQKVSDQVLMQGGSTQMVGSQVIPGSHKHHP-VGDSGVKFELH 502
             FKD  +P ++ V+D S +++ S+   +Q    +  G   + GS +  P +G      +  
Sbjct:   357 FKDTNSPITTCVRDVSASKEKSEGYSLQA-QKKKPGR--LQGSTQGKPEMGQPSKGSKFR 413

Query:   503 SCNSSQLAAGTSCRGSIQNNSMNTSKDSLQCARLKQDNKEIAMVKDLGHTLTDSSLKKPN 562
             +  S++L    +  GS  +++   S   L      +D K+         T T +      
Sbjct:   414 ASTSTELKNTVAPGGS--SSAQACSNTLLSTGTGAKDGKK--------ETATGTL----- 458

Query:   563 FV-SNGCKSH-ERNTNGVKQELDYPAITQESHALNVEVGSLHI--PDAEPIMNPSTTXXX 618
             FV S+G  +H E+++   K++   P + +  HA + + G + I  P+ E I         
Sbjct:   459 FVGSDGHGNHPEKDSENCKEKNVVPPVNESPHAKDTDDGLIEITVPELE-ITRAEAEAEA 517

Query:   619 XXXXXXXXXXXXYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY 678
                          +SDIEAMILDMDL+PDDQ  ++ EVSKYQ +D +R IIRLEQ AHSY
Sbjct:   518 EAHVCESDEDLPNYSDIEAMILDMDLEPDDQDNFDLEVSKYQSQDMKRTIIRLEQAAHSY 577

Query:   679 MQRAILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMIN 738
             MQRAI S GAFA+LYGR+SKHYIKKPEVL+GR+TED+ VDIDLGRE R +KISRRQA+I 
Sbjct:   578 MQRAIASRGAFAVLYGRYSKHYIKKPEVLVGRSTEDLAVDIDLGREKRGSKISRRQAIIR 637

Query:   739 MDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDS 798
             + + GSFH+KNLGK  I VN KEV P QS  L S CL+EIRG+ FIFETNQ+C++ YL  
Sbjct:   638 LGDDGSFHIKNLGKYSISVNEKEVDPGQSLILKSDCLVEIRGMPFIFETNQSCMQEYLKR 697

Query:   799 IMKEN 803
               K N
Sbjct:   698 RGKVN 702

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0006312 "mitotic recombination" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

TAIR|locus:2005644 AT1G75530 "AT1G75530" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
 Identities = 99/170 (58%), Positives = 124/170 (72%)

Query:   632 FSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAI 691
             FSD+EAMILDMDL+P  Q  YE + SKY++E+  R I+RLEQ A SYM R I +HGAFA+
Sbjct:   387 FSDLEAMILDMDLEPIGQDQYELDASKYRNEEMARKIMRLEQSAESYMNRDIAAHGAFAL 446

Query:   692 LYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG 751
             LYG  SKHYI KPEVLLGRAT +  VDIDLGR G   + SRRQA+I + + GSF +KNLG
Sbjct:   447 LYGS-SKHYINKPEVLLGRATGEYPVDIDLGRSGSETRFSRRQALIKLKQDGSFEIKNLG 505

Query:   752 KCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYLDSIMK 801
             K  I +N++E+   +   L ++CLI+IR  +FIFE N+  VKRYLD I K
Sbjct:   506 KFSIWMNDEEINHGEVVILKNNCLIQIREKSFIFEKNEKAVKRYLDGIHK 555

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2036621 AT1G60700 "AT1G60700" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 7.7e-27, Sum P(2) = 7.7e-27
 Identities = 73/165 (44%), Positives = 106/165 (64%)

Query:   634 DIEAMILDMDLDPDDQG--IYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAI 691
             DI+AMI  ++L PDD       +E +  +H   R A+I LEQ   + MQRAI+ HGA A+
Sbjct:   345 DIDAMIRKLNLVPDDSDSCFNREEWNMSKHP--RHALIGLEQCTRTSMQRAIMFHGAIAV 402

Query:   692 LYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG 751
             L+   SKH+++K EV++GR++  + VDIDLG+    +KISRRQA++ ++  GSF LKNLG
Sbjct:   403 LHCPDSKHFVRKREVIIGRSSGGLNVDIDLGKYNYGSKISRRQALVKLENYGSFSLKNLG 462

Query:   752 KCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCVKRYL 796
             K  ILVN  ++   Q   L S   I IRG+ F+F+ N+  V ++L
Sbjct:   463 KQHILVNGGKLDRGQIVTLTSCSSINIRGITFVFKINKEAVGQFL 507

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2R2M5 MCRS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 201 (75.8 bits), Expect = 5.8e-15, P = 5.8e-15
 Identities = 55/171 (32%), Positives = 87/171 (50%)

Query:   632 FSDIEAMILDMDL-DPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY---------MQR 681
             FSD E +I D  L D  D+ + E E++       +R I +LEQ  H +         M  
Sbjct:    90 FSDAEDLIDDSKLKDMRDE-VLEHELTVADRRQ-KREIRQLEQELHKWQVLVDSITGMSS 147

Query:   682 AILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE 741
                 +   A+L GR  ++ ++  E+ LGRAT+D  +D+DL  EG   KISR+Q +I +  
Sbjct:   148 PDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKN 207

Query:   742 AGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCV 792
              G F + N G+ PI ++ + V       L ++ ++EI  L F+F  NQ  +
Sbjct:   208 NGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLI 258

GO:0071339 "MLL1 complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

UNIPROTKB|Q7Z372 DKFZp686N07218 "Putative uncharacterized protein DKFZp686N07218" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 9.5e-15, P = 9.5e-15
 Identities = 55/171 (32%), Positives = 86/171 (50%)

Query:   632 FSDIEAMILDMDL-DPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY---------MQR 681
             FSD E +I D  L D  D+ + E E+        +R I +LEQ  H +         M  
Sbjct:    90 FSDAEDLIDDSKLKDMRDE-VLEHELMVADRRQ-KREIRQLEQELHKWQVLVDSITGMSS 147

Query:   682 AILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE 741
                 +   A+L GR  ++ ++  E+ LGRAT+D  +D+DL  EG   KISR+Q +I +  
Sbjct:   148 PDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKN 207

Query:   742 AGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCV 792
              G F + N G+ PI ++ + V       L ++ ++EI  L F+F  NQ  +
Sbjct:   208 NGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLI 258

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1311607 Mcrs1 "microspherule protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 5.1e-13, P = 5.1e-13
 Identities = 55/171 (32%), Positives = 88/171 (51%)

Query:   632 FSDIEAMILDMDL-DPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY---------MQR 681
             FSD E +I D +L D  D+ + E E++       +R I +LEQ  H +         M  
Sbjct:   281 FSDAEDLIDDSELKDMRDE-VLEHELTVADRRQ-KREIRQLEQELHKWQVLVDSITGMSS 338

Query:   682 AILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE 741
                 +   A+L GR  ++ ++  E+ LGRAT+D  +D+DL  EG   KISR+Q +I +  
Sbjct:   339 PDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKN 398

Query:   742 AGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCV 792
              G F + N G+ PI ++ + V       L ++ ++EI  L F+F  NQ  +
Sbjct:   399 NGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLI 449

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0031011 "Ino80 complex" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISO

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISO

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISO

MGI|MGI:1858420 Mcrs1 "microspherule protein 1" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 56/171 (32%), Positives = 90/171 (52%)

Query:   632 FSDIEAMILDMDL-DPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY--MQRAILSHGA 688
             FSD E +I D  L D  D+ + E E++       +R I +LEQ  H +  +  +I   G+
Sbjct:   281 FSDAEDLIDDSKLKDMRDE-VLEHELTVADRRQ-KREIRQLEQELHKWQVLVDSITGMGS 338

Query:   689 -------FAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE 741
                     A+L GR  ++ ++  E+ LGRAT+D  +D+DL  EG   KISR+Q +I +  
Sbjct:   339 PDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKN 398

Query:   742 AGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCV 792
              G F + N G+ PI ++ + V       L ++ ++EI  L F+F  NQ  +
Sbjct:   399 NGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLI 449

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0031011 "Ino80 complex" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

UNIPROTKB|H9KYV0 MCRS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 53/170 (31%), Positives = 83/170 (48%)

Query:   632 FSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY---------MQRA 682
             FSD E M+ D  L      + E E++       +R I +LEQ  H +         M   
Sbjct:   277 FSDAEDMLDDSKLKDVRDDVLEHELTVADRRQ-KREIRQLEQELHKWQVLVDSITGMNSP 335

Query:   683 ILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEA 742
                    A+L GR  ++ ++  E+ LGRAT+D  +D+DL  EG   KISR+Q +I +   
Sbjct:   336 DFDSQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLALEGPAWKISRKQGVIKLKNN 395

Query:   743 GSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCV 792
             G F + N G+ PI ++ + V       L ++ ++EI  L F+F  NQ  +
Sbjct:   396 GDFFIANEGRRPIYIDGRPVLGGNKWKLNNNSVVEIASLRFVFLINQDLI 445

GO:0000123 "histone acetyltransferase complex" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0071339 "MLL1 complex" evidence=IEA

UNIPROTKB|Q08E44 MCRS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 55/171 (32%), Positives = 87/171 (50%)

Query:   632 FSDIEAMILDMDL-DPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY---------MQR 681
             FSD E +I D  L D  D+ + E E++       +R I +LEQ  H +         M  
Sbjct:   281 FSDAEDLIDDSKLKDMRDE-VLEHELTVADRRQ-KREIRQLEQELHKWQVLVDSITGMSS 338

Query:   682 AILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE 741
                 +   A+L GR  ++ ++  E+ LGRAT+D  +D+DL  EG   KISR+Q +I +  
Sbjct:   339 PDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKN 398

Query:   742 AGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCV 792
              G F + N G+ PI ++ + V       L ++ ++EI  L F+F  NQ  +
Sbjct:   399 NGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLI 449

GO:0071339 "MLL1 complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

UNIPROTKB|G3V9E0 Mcrs1 "Protein Mcrs1" [Rattus norvegicus (taxid:10116)]

 Score = 201 (75.8 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 55/171 (32%), Positives = 87/171 (50%)

Query:   632 FSDIEAMILDMDL-DPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY---------MQR 681
             FSD E +I D  L D  D+ + E E++       +R I +LEQ  H +         M  
Sbjct:   281 FSDAEDLIDDSKLKDMRDE-VLEHELTVADRRQ-KREIRQLEQELHKWQVLVDSITGMSS 338

Query:   682 AILSHGAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE 741
                 +   A+L GR  ++ ++  E+ LGRAT+D  +D+DL  EG   KISR+Q +I +  
Sbjct:   339 PDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKN 398

Query:   742 AGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQTCV 792
              G F + N G+ PI ++ + V       L ++ ++EI  L F+F  NQ  +
Sbjct:   399 NGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLI 449

GO:0000123 "histone acetyltransferase complex" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0071339 "MLL1 complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.1595.1 hypothetical protein (725 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	810
cd00060	102	cd00060, FHA, Forkhead associated domain (FHA); fo	1e-05
pfam00498	67	pfam00498, FHA, FHA domain	8e-04

>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 702 KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKC-PILVNNK 760
                 +GR +++  + +D         +SRR A+I  D  G   L +LG      VN +
Sbjct: 20  PGGTYTIGRDSDNCDIVLDD------PSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQ 73

Query: 761 EVPPRQSQGLGSSCLIEI--RGLAFIFET 787
            V P +   L    +I +    ++F FE+
Sbjct: 74  RVSPGEPVRLRDGDVIRLGNTSISFRFES 102

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102

>gnl|CDD|215951 pfam00498, FHA, FHA domain

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 706 VLLGRATE-DVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKC-PILVNNKEVP 763
           V +GR+ + D+V+D           +SRR A I  D  G F+L++LG      VN + + 
Sbjct: 1   VTIGRSPDCDIVLD--------DPSVSRRHAEIRYDGGGRFYLEDLGSTNGTFVNGQRLG 52

Query: 764 PRQSQGLGSSCLIEI 778
           P   + L    +I +
Sbjct: 53  PEPVR-LRDGDVIRL 66

The FHA (Forkhead-associated) domain is a phosphopeptide binding motif. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	810
KOG2293	547	consensus Daxx-interacting protein MSP58/p78, cont	100.0
cd00060	102	FHA Forkhead associated domain (FHA); found in euk	99.25
PF00498	68	FHA: FHA domain; InterPro: IPR000253 The forkhead-	99.21
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	99.13
COG5025	610	Transcription factor of the Forkhead/HNF3 family [	98.86
TIGR03354	396	VI_FHA type VI secretion system FHA domain protein	98.61
smart00240	52	FHA Forkhead associated domain. Found in eukaryoti	98.27
COG1716	191	FOG: FHA domain [Signal transduction mechanisms]	98.04
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.84
COG3456	430	Predicted component of the type VI protein secreti	97.54
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	95.15
KOG0245	1221	consensus Kinesin-like protein [Cytoskeleton]	93.21
KOG1881	793	consensus Anion exchanger adaptor protein Kanadapt	92.87
KOG1882	293	consensus Transcriptional regulator SNIP1, contain	88.78
TIGR02500	410	type_III_yscD type III secretion apparatus protein	86.77

>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]

Probab=100.00  E-value=4e-53  Score=463.48  Aligned_cols=174  Identities=59%  Similarity=0.869  Sum_probs=167.5

Q ss_pred             CCCCCcccHHHHHhcCCCCCCCchhhhhhhhccccHHHHHHHHHHHhhhhhHhHHhhcCCcceEEEEecceeEeeccCeE
Q 003567          627 DDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEV  706 (810)
Q Consensus       627 d~vpsFSDaE~mIld~dL~p~dq~~~~~Evsr~q~~~~kr~I~rLEqe~~s~~~r~i~~~~AlAvL~Gr~~~YyIrs~eV  706 (810)
                      ++++  ||+|+||+|++|.|.||+....|.+.++.+..+|.|+||||.+++||||+|+.+||||||+|+.++||||++||
T Consensus       373 E~Le--~diEami~D~dl~p~~qd~r~le~e~~r~~~l~~~iirleqs~~~~mqrai~~hgAiAvL~Gr~skh~mrk~EV  450 (547)
T KOG2293|consen  373 EELE--SDIEAMILDMDLEPDDQDIRSLEAEKSRSQVLVRSIIRLEQSAESYMQRAIAFHGAIAVLYGRFSKHYMRKKEV  450 (547)
T ss_pred             cccc--chHHHHHhhcccCCcchHHHHHHHHHhhhHHHHHHhhhhhhcccchhhhhhhhcceeEEEechhhHhhhcCcce
Confidence            5566  99999999999999999987666666788889999999999999999999999999999999999999999999


Q ss_pred             EECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCCccccCCCCeEEEcCeEEEEE
Q 003567          707 LLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFE  786 (810)
Q Consensus       707 tIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGKngI~VNGk~i~~G~~~~L~sgsLIEIggl~fiFl  786 (810)
                      +|||+|.+..|||||++|||++|||||||+|||..+|+|+|+|+||++|+|||++|.+|++++|+++|||||.|++|+|+
T Consensus       451 tlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK~~I~vng~~l~~gq~~~L~~nclveIrg~~FiF~  530 (547)
T KOG2293|consen  451 TLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGKRSILVNGGELDRGQKVILKNNCLVEIRGLRFIFE  530 (547)
T ss_pred             EeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCcceeEEeCCccccCCceEEeccCcEEEEccceEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eChHhHHHHHhhhhcc
Q 003567          787 TNQTCVKRYLDSIMKE  802 (810)
Q Consensus       787 lN~~lV~~~l~~~~kk  802 (810)
                      +|+++|.+||+++.|.
T Consensus       531 ~N~~~v~~~l~~~~K~  546 (547)
T KOG2293|consen  531 INQEAVGQYLKENAKR  546 (547)
T ss_pred             ecHHHHHHHHHhcccc
Confidence            9999999999999875

>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins

Probab=99.25  E-value=5.1e-11  Score=102.91  Aligned_cols=92  Identities=26%  Similarity=0.445  Sum_probs=80.1

Q ss_pred             eEEEEe--cceeEeecc-CeEEECCCCCCCCcceecCCCCCCccchhhceeeeecC-CCcEEEEecccCCeEECcEEcCC
Q 003567          689 FAILYG--RHSKHYIKK-PEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE-AGSFHLKNLGKCPILVNNKEVPP  764 (810)
Q Consensus       689 lAvL~G--r~~~YyIrs-~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~-dg~F~L~NlGKngI~VNGk~i~~  764 (810)
                      |.++.|  ...+|.++. .+++|||+...  +||-|.    ...|||+||+|+++. .+.|++.+.++++++|||+++..
T Consensus         4 L~~~~~~~~~~~~~l~~~~~~~iGr~~~~--~~i~l~----~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~~   77 (102)
T cd00060           4 LVVLSGDASGRRYYLDPGGTYTIGRDSDN--CDIVLD----DPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSP   77 (102)
T ss_pred             EEEecCCCceeEEEECCCCeEEECcCCCc--CCEEcC----CCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECCC
Confidence            455666  688999999 99999998887  777773    799999999999998 67788888889999999999999


Q ss_pred             CCccccCCCCeEEEc--CeEEEEE
Q 003567          765 RQSQGLGSSCLIEIR--GLAFIFE  786 (810)
Q Consensus       765 G~~~~L~sgsLIEIg--gl~fiFl  786 (810)
                      +.++.|.+|++|.|+  ...|+|.
T Consensus        78 ~~~~~l~~gd~i~ig~~~~~~~~~  101 (102)
T cd00060          78 GEPVRLRDGDVIRLGNTSISFRFE  101 (102)
T ss_pred             CCcEECCCCCEEEECCeEEEEEEe
Confidence            999999999999999  6666653

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).

>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins

Probab=99.21  E-value=2.1e-11  Score=100.87  Aligned_cols=67  Identities=33%  Similarity=0.502  Sum_probs=58.5

Q ss_pred             EEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecc-cCCeEECcEEcCCCCccccCCCCeEEEc
Q 003567          706 VLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVPPRQSQGLGSSCLIEIR  779 (810)
Q Consensus       706 VtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlG-KngI~VNGk~i~~G~~~~L~sgsLIEIg  779 (810)
                      |+|||+   ...||-|.    ...|||+||.|.++.++.|+|+++| +|++||||+++.++.++.|.+|++|.||
T Consensus         1 ~~iGR~---~~~di~l~----~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G   68 (68)
T PF00498_consen    1 VTIGRS---PDCDIVLP----DPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG   68 (68)
T ss_dssp             EEEESS---TTSSEEET----STTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred             CEEcCC---CCCCEEEC----CHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence            689999   45677773    5779999999999988899999997 8999999999999999999999999987

It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=99.13  E-value=2.4e-11  Score=123.24  Aligned_cols=72  Identities=25%  Similarity=0.310  Sum_probs=65.4

Q ss_pred             CCCCccCCCCCCCCCCCCCCCCCCCCCcccHHHHHhcCCCC-CCCchhhhhhhhccccHHHHHHHHHHHhhhhhH
Q 003567          605 DAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDLD-PDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY  678 (810)
Q Consensus       605 ~~~~~~y~ll~dQ~~~~~~s~~d~vpsFSDaE~mIld~dL~-p~dq~~~~~Evsr~q~~~~kr~I~rLEqe~~s~  678 (810)
                      ++.+++|+||+||.+++++..++.+++|||+|++|+|.+|. |.|+ .+++|+ .+++|++||+||+||+|+.+|
T Consensus       122 W~lmkqy~LL~DQ~v~~~~~~~~~~~sfsDaEd~i~d~~l~~~~de-~l~~el-~~~dr~~k~~ir~lE~el~~w  194 (199)
T PF13325_consen  122 WRLMKQYHLLPDQSVQPLPKQDDQVLSFSDAEDLIDDSELKDPRDE-ALEHEL-ELADRRQKREIRQLENELSRW  194 (199)
T ss_pred             HHHHHHhchhhccccCCCCCCCccccccccHHHHhhccccccCccc-ccchhh-hHHhHHHHHHHHHHHHHhhhh
Confidence            36899999999999999998856899999999999999995 7775 468999 589999999999999999999

>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]

Probab=98.86  E-value=7.1e-10  Score=127.50  Aligned_cols=102  Identities=19%  Similarity=0.115  Sum_probs=93.2

Q ss_pred             CCcceEEEEecceeEeeccCeEEECCCCCC---------------CCcceecCCCCCCccchhhceeeeecCC-CcEEEE
Q 003567          685 SHGAFAILYGRHSKHYIKKPEVLLGRATED---------------VVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLK  748 (810)
Q Consensus       685 ~~~AlAvL~Gr~~~YyIrs~eVtIGRsT~~---------------~~VDIDLs~EGpaskISRrHA~Ikl~~d-g~F~L~  748 (810)
                      ..+|||+|.|-.|+||+...+|.+||..+-               +.+++++   |++++++|+|+.|+++.. +.|+|+
T Consensus        70 ~~qayak~~g~~~t~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~---~~~k~~~~~~~sIr~Nls~~~a~~~  146 (610)
T COG5025          70 EIQAYAKLAGSNWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFF---YYAKVVSRWQNSIRHNLSLNDAFIK  146 (610)
T ss_pred             HhhhHHHhcCCCcccccCCeeeeeccccccccCcccCCcccceeeeeeeccc---ccccccchhhhhhhcccccCceEEE
Confidence            457899999999999999999999996542               4577888   999999999999999974 899999


Q ss_pred             ecccCCeEECcEEcCCCC---ccccCCCCeEEEcCeEEEEEeCh
Q 003567          749 NLGKCPILVNNKEVPPRQ---SQGLGSSCLIEIRGLAFIFETNQ  789 (810)
Q Consensus       749 NlGKngI~VNGk~i~~G~---~~~L~sgsLIEIggl~fiFllN~  789 (810)
                      .+||+++.|+|+++.-|.   ...|..|+++++++.+++|.++.
T Consensus       147 i~g~~g~~~~g~~~~igP~~~~~~l~~g~~~~~~~~~~~~~~p~  190 (610)
T COG5025         147 IEGRNGAKVKGHFWSIGPGHETQFLKSGLRLDGGGKQMMFTLPS  190 (610)
T ss_pred             EeccCCccccceeeccCCCccceeeccccccccccccccccCcc
Confidence            999999999999999887   89999999999999999999874

>TIGR03354 VI_FHA type VI secretion system FHA domain protein

Probab=98.61  E-value=1e-07  Score=105.42  Aligned_cols=89  Identities=16%  Similarity=0.232  Sum_probs=77.4

Q ss_pred             ecceeEeeccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEEC--cEEcCCCCccccC
Q 003567          694 GRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVN--NKEVPPRQSQGLG  771 (810)
Q Consensus       694 Gr~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGKngI~VN--Gk~i~~G~~~~L~  771 (810)
                      |....|.+.+..++|||...   .|+=|  ..+...|||+||+|.++ +|.|+|+.+++||+|||  |.++..|..++|.
T Consensus        14 g~~~~~~f~~~~~~IGR~~~---~d~~l--~d~~~~VS~~Ha~I~~~-~g~~~l~DlStNGT~VN~sg~~l~~~~~~~L~   87 (396)
T TIGR03354        14 GIAAQKTFGTNGGTIGRSED---CDWVL--PDPERHVSGRHARIRYR-DGAYLLTDLSTNGVFLNGSGSPLGRGNPVRLE   87 (396)
T ss_pred             CcceEEEECCCCEEEecCCC---CCEEe--CCCCCCcchhhcEEEEE-CCEEEEEECCCCCeEECCCCCCCCCCCceEcC
Confidence            55678888899999999864   34444  34566799999999998 68899999988999999  9999999999999


Q ss_pred             CCCeEEEcCeEEEEEeC
Q 003567          772 SSCLIEIRGLAFIFETN  788 (810)
Q Consensus       772 sgsLIEIggl~fiFllN  788 (810)
                      +|++|.||...+.|.+.
T Consensus        88 ~GD~I~iG~~~lrv~~~  104 (396)
T TIGR03354        88 QGDRLRLGDYEIRVSLG  104 (396)
T ss_pred             CCCEEEECCEEEEEEeC
Confidence            99999999999999995

Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.

>smart00240 FHA Forkhead associated domain

Probab=98.27  E-value=1.4e-06  Score=68.29  Aligned_cols=51  Identities=45%  Similarity=0.646  Sum_probs=42.1

Q ss_pred             EEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecc-cCCeEECcEEc
Q 003567          706 VLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEV  762 (810)
Q Consensus       706 VtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlG-KngI~VNGk~i  762 (810)
                      ++|||..+  ..||-|.  ++  .|||+||.|+++.++.|+|++.+ ++++||||+++
T Consensus         1 ~~iGr~~~--~~~i~~~--~~--~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~~v   52 (52)
T smart00240        1 VTIGRSSE--DCDIQLP--GP--SISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGKRI   52 (52)
T ss_pred             CEeCCCCC--CCCEEeC--CC--CcchhHcEEEECCCCeEEEEECCCCCCeeECCEEC
Confidence            47999876  3455552  33  49999999999998899999999 89999999975

Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.

>COG1716 FOG: FHA domain [Signal transduction mechanisms]

Probab=98.04  E-value=2.2e-05  Score=76.30  Aligned_cols=93  Identities=25%  Similarity=0.253  Sum_probs=70.4

Q ss_pred             ceEEEEecceeEeeccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecc-cCCeEECcEEcCCCC
Q 003567          688 AFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVPPRQ  766 (810)
Q Consensus       688 AlAvL~Gr~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlG-KngI~VNGk~i~~G~  766 (810)
                      ...+......++......++|||.   ...||=|    +...|||+||.|+++.+. |+++.+| .||.||||.++..  
T Consensus        73 ~~~~~~~~~~~~~~~~~~~tigr~---~~~~i~~----~~~~vSR~Ha~l~~~~~~-~~~~d~~S~nGt~vn~~~v~~--  142 (191)
T COG1716          73 AVTIGLDEGSVIVLGEPVTTIGRD---PDNDIVL----DDDVVSRRHAELRREGNE-VFLEDLGSTNGTYVNGEKVRQ--  142 (191)
T ss_pred             eEEEecccCcccccccceEEeccC---CCCCEEc----CCCccccceEEEEEeCCc-eEEEECCCCcceEECCeEccC--
Confidence            333344445567777779999992   2333333    568999999999999665 5557777 5999999999987  


Q ss_pred             ccccCCCCeEEEcCeEE-EEEeChH
Q 003567          767 SQGLGSSCLIEIRGLAF-IFETNQT  790 (810)
Q Consensus       767 ~~~L~sgsLIEIggl~f-iFllN~~  790 (810)
                      .+.|.+|++|.|+.... .+.+...
T Consensus       143 ~~~l~~gd~i~i~~~~~~~~~~~~~  167 (191)
T COG1716         143 RVLLQDGDVIRLGGTLAERLRIILT  167 (191)
T ss_pred             cEEcCCCCEEEECccceeeEeeccc
Confidence            89999999999999988 6655443

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.84  E-value=3.6e-05  Score=90.59  Aligned_cols=76  Identities=18%  Similarity=0.296  Sum_probs=63.2

Q ss_pred             ccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEeccc-CCeEECcEE-----cCCCCccccCCCCe
Q 003567          702 KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGK-CPILVNNKE-----VPPRQSQGLGSSCL  775 (810)
Q Consensus       702 rs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGK-ngI~VNGk~-----i~~G~~~~L~sgsL  775 (810)
                      .+.-.+|||.+.....+.-+-  =+...||+.||.|.++ ++.|||+.++. ||.||||..     +.++.+++|++|++
T Consensus       555 ~~~p~~iG~~~~~~~~~~~i~--i~~~~vS~~Ha~i~~~-~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~  631 (668)
T PLN02927        555 EDQPCIVGSEPDQDFPGMRIV--IPSSQVSKMHARVIYK-DGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDI  631 (668)
T ss_pred             CCCCeEecCCCCcCCCCceEE--ecCCccChhHeEEEEE-CCEEEEEECCCCCccEEeCCCCceEecCCCCceEeCCCCE
Confidence            667789999876543222221  2568999999999999 88999999997 999998887     67899999999999


Q ss_pred             EEEcC
Q 003567          776 IEIRG  780 (810)
Q Consensus       776 IEIgg  780 (810)
                      |+||.
T Consensus       632 I~~g~  636 (668)
T PLN02927        632 IEFGS  636 (668)
T ss_pred             EEeCC
Confidence            99998

>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.54  E-value=0.00017  Score=80.70  Aligned_cols=86  Identities=19%  Similarity=0.313  Sum_probs=72.2

Q ss_pred             eeEeeccCeEEECCCCC-CCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCCc-cccCCCC
Q 003567          697 SKHYIKKPEVLLGRATE-DVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQS-QGLGSSC  774 (810)
Q Consensus       697 ~~YyIrs~eVtIGRsT~-~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGKngI~VNGk~i~~G~~-~~L~sgs  774 (810)
                      ..+......-+|||+.+ +|.||      -+-..||++||+|.++ +|.|+|+....++.+|||-.++.|.. .+|.+|+
T Consensus        19 aq~~f~~~~g~IGrs~dcdW~i~------D~~~~VS~~Hc~I~~~-dg~f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd   91 (430)
T COG3456          19 AQKLFDRGGGVIGRSPDCDWQID------DPERFVSKQHCTISYR-DGGFCLTDTSNGGLLVNGSDLPLGEGSARLQQGD   91 (430)
T ss_pred             hhhhhhcCCcccccCCCCCcccc------CcccccchhheEEEec-CCeEEEEecCCCceeecccccCCCCCccccccCC
Confidence            34455566788999643 24433      4677999999999999 78899999999999999999999987 9999999


Q ss_pred             eEEEcCeEEEEEeCh
Q 003567          775 LIEIRGLAFIFETNQ  789 (810)
Q Consensus       775 LIEIggl~fiFllN~  789 (810)
                      .|.||+..|.-.+..
T Consensus        92 ~i~iG~y~i~V~l~~  106 (430)
T COG3456          92 EILIGRYIIRVHLSR  106 (430)
T ss_pred             EEeeccEEEEEEecc
Confidence            999999999888853

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=95.15  E-value=0.032  Score=64.76  Aligned_cols=80  Identities=28%  Similarity=0.329  Sum_probs=64.3

Q ss_pred             ecceeEeeccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCC-CcEEEEecccCCeEECcEEcCCCCccccCC
Q 003567          694 GRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLKNLGKCPILVNNKEVPPRQSQGLGS  772 (810)
Q Consensus       694 Gr~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~d-g~F~L~NlGKngI~VNGk~i~~G~~~~L~s  772 (810)
                      +++....+....|+|||..+..--         .++-||+|-.++-+.+ |...++.+|.||.-|||+.+.+|..+.|.+
T Consensus        22 ~~~~~~~~~~~~~~~gr~pet~i~---------d~~cs~~qv~l~a~~~~~~v~~k~lg~np~~~~~~~~~~~~~~~l~~   92 (526)
T TIGR01663        22 AEHHFIHLDAGALFLGRGPETGIR---------DRKCSKRQIELQADLEKATVALKQLGVNPCGTGGLELKPGGEGELGH   92 (526)
T ss_pred             CCCCeeccCCCceEEccCcccccc---------hhhhchhhheeeecccCceEEEEEccCCCcccCceEecCCCeeeecC
Confidence            344444455678899997655433         4677999999998865 788899999999999999999999999999


Q ss_pred             CCeEEEcCeE
Q 003567          773 SCLIEIRGLA  782 (810)
Q Consensus       773 gsLIEIggl~  782 (810)
                      |++++|=--+
T Consensus        93 g~~l~~v~~~  102 (526)
T TIGR01663        93 GDLLEIVNGL  102 (526)
T ss_pred             CCEEEEeccc
Confidence            9999985333

Note that the EC number for the kinase function is: 2.7.1.78

>KOG0245 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.21  E-value=0.68  Score=57.47  Aligned_cols=95  Identities=25%  Similarity=0.277  Sum_probs=76.7

Q ss_pred             ceEEEEecc--------eeEeeccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCC-CcEEEEecccCCeEEC
Q 003567          688 AFAILYGRH--------SKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLKNLGKCPILVN  758 (810)
Q Consensus       688 AlAvL~Gr~--------~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~d-g~F~L~NlGKngI~VN  758 (810)
                      -.+-|.+-+        .-|||+.=+..|||......-||=|+  |  ..|--.|++|+.... .-..|..-+.--+|||
T Consensus       453 k~phLVNLneDPllSe~LlY~ikeG~TrVG~~~a~~~~DI~Ls--G--~~I~~qHC~i~~~~g~~~vtl~p~e~aetyVN  528 (1221)
T KOG0245|consen  453 KTPHLVNLNEDPLLSECLLYYIKEGETRVGREDASSRQDIVLS--G--QLIREQHCSIRNEGGNDVVTLEPCEDAETYVN  528 (1221)
T ss_pred             cCcceeccCCCchhhccEEEEeccCceecCCCCcccCCceEec--c--hhhhhhceEEEecCCCceEEeccCCccceeEc
Confidence            445555544        56999999999999999999999996  4  457789999998743 2488888889999999


Q ss_pred             cEEcCCCCccccCCCCeEEEcCeEEEEEeCh
Q 003567          759 NKEVPPRQSQGLGSSCLIEIRGLAFIFETNQ  789 (810)
Q Consensus       759 Gk~i~~G~~~~L~sgsLIEIggl~fiFllN~  789 (810)
                      ||.|.  .+..|++|+.|=+|| .-+|..|.
T Consensus       529 Gk~v~--ep~qL~~GdRiilG~-~H~frfn~  556 (1221)
T KOG0245|consen  529 GKLVT--EPTQLRSGDRIILGG-NHVFRFNH  556 (1221)
T ss_pred             cEEcC--CcceeccCCEEEEcC-ceeEEecC
Confidence            99997  588999999999998 44555554

>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]

Probab=92.87  E-value=0.11  Score=62.15  Aligned_cols=79  Identities=23%  Similarity=0.358  Sum_probs=66.2

Q ss_pred             ccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCCC-c---------EEEEeccc-CCeEECcEEcCCCCcccc
Q 003567          702 KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAG-S---------FHLKNLGK-CPILVNNKEVPPRQSQGL  770 (810)
Q Consensus       702 rs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg-~---------F~L~NlGK-ngI~VNGk~i~~G~~~~L  770 (810)
                      .+..++|||-+   .-|+=|  +  ..-|||-||+|.|...| .         |||..+|. .|.|+|-.+|++-.=+++
T Consensus       175 ~~~~~~fgr~~---~cD~~~--e--HpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~  247 (793)
T KOG1881|consen  175 GAAACLFGRLG---GCDVAL--E--HPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRD  247 (793)
T ss_pred             cceeEEecccC---CCcccc--c--cCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcchhhh
Confidence            34457899976   334444  2  45799999999999753 4         99999998 999999999999999999


Q ss_pred             CCCCeEEEcCeEEEEEe
Q 003567          771 GSSCLIEIRGLAFIFET  787 (810)
Q Consensus       771 ~sgsLIEIggl~fiFll  787 (810)
                      +=|.++++||=.++|++
T Consensus       248 ~Vg~v~~fggsTrl~i~  264 (793)
T KOG1881|consen  248 RVGHVARFGGSTRLYIF  264 (793)
T ss_pred             hHHHHHHhcCceEEEEe
Confidence            99999999999999886

>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]

Probab=88.78  E-value=0.65  Score=49.94  Aligned_cols=53  Identities=21%  Similarity=0.305  Sum_probs=45.8

Q ss_pred             CccchhhceeeeecC------CC------cEEEEeccc-CCeEECcEEcCCCCccccCCCCeEEEc
Q 003567          727 TNKISRRQAMINMDE------AG------SFHLKNLGK-CPILVNNKEVPPRQSQGLGSSCLIEIR  779 (810)
Q Consensus       727 askISRrHA~Ikl~~------dg------~F~L~NlGK-ngI~VNGk~i~~G~~~~L~sgsLIEIg  779 (810)
                      ...-|.+||+|.|..      ||      .-||-.||. ||.|+|.++|.+-.-+-|..+++|-+|
T Consensus       211 hpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~IepqRYyEL~ekDvlkfg  276 (293)
T KOG1882|consen  211 HPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEPQRYYELREKDVLKFG  276 (293)
T ss_pred             CccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCchheeeeecCceeeec
Confidence            445689999999984      43      368999997 999999999999888999999999887

>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family

Probab=86.77  E-value=2.1  Score=48.23  Aligned_cols=89  Identities=20%  Similarity=0.315  Sum_probs=62.2

Q ss_pred             eEEEEecc--eeEeeccCeEEEC-CCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCC
Q 003567          689 FAILYGRH--SKHYIKKPEVLLG-RATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPR  765 (810)
Q Consensus       689 lAvL~Gr~--~~YyIrs~eVtIG-RsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGKngI~VNGk~i~~G  765 (810)
                      +-+|.|.+  ..+.+..-+.+|| |.     -|+||-+  ....|||+|++|....+| +.|..- ..++++||.++.-.
T Consensus         3 lrvl~G~~~G~~~~L~~g~~~iG~~~-----~~~di~L--~d~~~~~~h~~l~v~~~~-~~l~~~-~~~~~~~g~~~~~~   73 (410)
T TIGR02500         3 LRVLSGPHRGAELPLPEGNLVLGTDA-----ADCDIVL--SDGGIAAVHVSLHVRLEG-VTLAGA-VEPAWEEGGVLPDE   73 (410)
T ss_pred             EEEecCCCCCcEEECCCCceEeccCC-----CCcEEEe--CCCCccchheEEEEcCce-EEEecC-CcceeECCcccccC
Confidence            34555553  5666777778999 76     4444433  366799999999999766 444422 23489999444444


Q ss_pred             CccccCCCCeEEEcCeEEEEE
Q 003567          766 QSQGLGSSCLIEIRGLAFIFE  786 (810)
Q Consensus       766 ~~~~L~sgsLIEIggl~fiFl  786 (810)
                      .-..|..+..|+++++.|.|=
T Consensus        74 ~g~~l~~~~~l~~g~~~~~~g   94 (410)
T TIGR02500        74 EGTPLPSGTPLLVAGVAFALG   94 (410)
T ss_pred             CCCccCCCCceecceeEEecc
Confidence            445688999999999999993

This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	810
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1gxc_A	149	CHK2, CDS1, serine/threonine-protein kinase CHK2;	2e-04
1lgp_A	116	Cell cycle checkpoint protein CHFR; FHA, tungstate	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 43/301 (14%), Positives = 90/301 (29%), Gaps = 83/301 (27%)

Query: 561 PNFVSN-GCKSHERNTNGV--KQELDYPAITQESHALN----------------VE--VG 599
             FV N  CK  +     +  K+E+D+  I     A++                V+  V 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 600 SLHIPDAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKY 659
            +   + + +M+P  TE   PS+ +      Y    + +  D            Q  +KY
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRM----YIEQRDRLYNDN-----------QVFAKY 129

Query: 660 QHEDTRRAIIRLEQGAHSYMQRAI--LSHGAFAILYGRH--SKHYIKKPEVLLGRATEDV 715
                   + RL+   +  +++A+  L      ++ G     K        +        
Sbjct: 130 N-------VSRLQP--YLKLRQALLELRPAKNVLIDGVLGSGKT------WVALDVCLSY 174

Query: 716 VVD---------IDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQ 766
            V          ++L        +      +      ++  ++     I +    +    
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 767 SQGLGSS----CLIEIRGL-------AFIFE------TNQTCVKRYLDSIMKENRTHEHQ 809
            + L S     CL+ +  +       AF         T    V  +L +    + + +H 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 810 S 810
           S
Sbjct: 295 S 295

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 38/288 (13%), Positives = 72/288 (25%), Gaps = 88/288 (30%)

Query: 3   EYERSALTLPK---VFSRAGNSKEIKLSSGKRK---------AESVRSC-----YYALRK 45
           ++    LT  +   +  +  + +   L               AES+R        +   K
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW---K 348

Query: 46  RIHNEPFNSI---DLSFLNAPGNRNFYG-------NGDEPPSRNCML------GDPM--A 87
            ++ +   +I    L+ L     R  +        +   P     ++       D M   
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 88  NHF---GLQDSNLDVMHRKFPDIPMDDDASCRDGPTLHR-------FHGGFDH----PGE 133
           N      L +          P I ++      +   LHR           FD     P  
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 134 ED---FS--------MQQGEMHEEIPHIFEENQSFRGNGARVVELGL----PGQVPNLFE 178
            D   +S        ++  E       +F     FR    ++          G + N   
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFRFLEQKIRHDSTAWNASGSILNTL- 524

Query: 179 ADHMEANPLSTYGQ--TNDDAGN---ICTLE------GNQVFRSPIPD 215
                   L  Y     ++D      +  +          +  S   D
Sbjct: 525 QQ------LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 9/101 (8%)

Query: 695 RHSKHYIKKPEVLLGRATE-DVVV-DIDLGREGRTNKISRRQAMINMD----EAGSFHLK 748
             +           GR    +    +  L R  +    S++   I  +     +   +++
Sbjct: 39  GFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIE 98

Query: 749 NLGKCPILVNNKEVPPRQSQGLGSSCLIEI---RGLAFIFE 786
           +       VN + V   + + L ++  I +   R   F+F 
Sbjct: 99  DHSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFF 139

>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 701 IKKPEVLLGRATE-DVVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLKNLGKCPILVN 758
           ++K E  +GR    D+    +         +S     I +DE  G   L++      ++N
Sbjct: 21  LRKREWTIGRRRGCDLSFPSN-------KLVSGDHCRIVVDEKSGQVTLEDTSTSGTVIN 73

Query: 759 NKEVPPRQSQGLGSSCLIEI--------RGLAFIFE 786
             +V  +Q+  L +  +I +          +A+++E
Sbjct: 74  KLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYE 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	810
d2piea1	127	b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8	6e-04

>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Ubiquitin ligase protein RNF8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 704 PEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEV 762
            EV +GR      V   L  +     ISR   ++  +  G + + +      + +N   +
Sbjct: 24  CEVTVGR---GFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARL 80

Query: 763 PPRQSQGLGSSCLIEI 778
            P +   +     I++
Sbjct: 81  EPLRVYSIHQGDYIQL 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	810
d2piea1	127	Ubiquitin ligase protein RNF8 {Human (Homo sapiens	99.39
d2ff4a3	99	Probable regulatory protein EmbR, C-terminal domai	99.3
d1g6ga_	127	Phosphotyrosine binding domain of Rad53 {Baker's y	99.27
d1uhta_	118	FHA domain containing protein At4G14490 {Thale cre	99.18
d2brfa1	101	Polynucleotide kinase 3'-phosphatase {Human (Homo	99.13
d1gxca_	116	Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.13
d2affa1	98	Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1lgpa_	113	Cell cycle checkpoint protein Chfr {Human (Homo sa	99.1
d1mzka_	122	Kinase associated protein phosphatase {Thale cress	99.08
d1wlna1	107	Afadin {Mouse (Mus musculus) [TaxId: 10090]}	98.86
d2g1la1	102	Kinesin-like protein kif1c {Human (Homo sapiens) [	98.79
d1dmza_	158	Phosphotyrosine binding domain of Rad53 {Baker's y	98.75

>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Ubiquitin ligase protein RNF8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.5e-12  Score=93.77  Aligned_cols=95  Identities=15%  Similarity=0.151  Sum_probs=76.2

Q ss_pred             CCEEEEECCCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECC-CCCEEECCEECCCCCCCCCCCC
Q ss_conf             430575106908977999999831004898997500021002225489959999523-4975978677199993126999
Q 003567          695 RHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVPPRQSQGLGSS  773 (810)
Q Consensus       695 r~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlG-KngI~VNGk~I~~G~~~~L~sg  773 (810)
                      ..|.++-...+++|||..   .+|+.|........|||+||+|.++.+|.|+|.++| +||+||||.++.+++++.|.+|
T Consensus        15 ~~~~~l~~~~~~tiGR~~---~~~~~l~~~~~~~~VSR~Ha~i~~~~~g~~~l~D~~S~NGt~lNg~~l~~~~~~~L~~G   91 (127)
T d2piea1          15 AGWLLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQG   91 (127)
T ss_dssp             SCBEEECTTCCEEEESSS---SSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECCTTCCEECCTT
T ss_pred             CCEEECCCCCEEEECCCC---CCCEEECCCCCCCCCCHHHEEEEECCCCEEEEEECCCCCCEEECCEECCCCCEEECCCC
T ss_conf             884885789988753678---76589789975661662361899979985999987773772799999469930694799


Q ss_pred             CEEEEC-------CEEEEEEECHHHH
Q ss_conf             937886-------9089999294769
Q 003567          774 CLIEIR-------GLAFIFETNQTCV  792 (810)
Q Consensus       774 sLIEIg-------gi~fiFllN~~lV  792 (810)
                      ++|+||       .+.|.|++-.+-.
T Consensus        92 D~I~iG~p~~~~~~~~f~~~~~~~~~  117 (127)
T d2piea1          92 DYIQLGVPLENKENAEYEYEVTEEDW  117 (127)
T ss_dssp             CEEEESCCCTTCSSCSEEEEEEEEEH
T ss_pred             CEEEECCCCCCCCCEEEEEEECCCCC
T ss_conf             99995888877764479999573200

>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=1.3e-11  Score=89.20  Aligned_cols=94  Identities=20%  Similarity=0.269  Sum_probs=76.7

Q ss_pred             CCCCEEEEEEC--CEEEEECCCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECC-CCCEEECCEE
Q ss_conf             78613999844--30575106908977999999831004898997500021002225489959999523-4975978677
Q 003567          685 SHGAFAILYGR--HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKE  761 (810)
Q Consensus       685 ~~~AlAvL~Gr--~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlG-KngI~VNGk~  761 (810)
                      +.++.|.|.+-  --+|.+.+..++|||...   -||=|    +...|||+||.|.++ ++.|+|+.+| +||+||||++
T Consensus         2 g~~~~~~l~~~~~G~~~~l~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~i~~~-~~~~~i~Dl~S~nGt~vNg~~   73 (99)
T d2ff4a3           2 GQQAVAYLHDIASGRGYPLQAAATRIGRLHD---NDIVL----DSANVSRHHAVIVDT-GTNYVINDLRSSNGVHVQHER   73 (99)
T ss_dssp             SSBCCCEEEETTTCCEEECCSSEEEEESSTT---SSEEC----CCTTSCTTCEEEEEC-SSCEEEEECSCSSCCEETTEE
T ss_pred             CCCCEEEEECCCCCCEEEECCCCEEEEECCC---CCEEE----CCCCCCCEEEEEEEE-CCEEEEEECCCCCCCEECCEE
T ss_conf             9754799870799879998998889814768---99998----896626036999975-998999999985887699999


Q ss_pred             CCCCCCCCCCCCCEEEECCEEEEEEEC
Q ss_conf             199993126999937886908999929
Q 003567          762 VPPRQSQGLGSSCLIEIRGLAFIFETN  788 (810)
Q Consensus       762 I~~G~~~~L~sgsLIEIggi~fiFllN  788 (810)
                      +.  .+..|.+|++|+||...|.|.+-
T Consensus        74 i~--~~~~L~~Gd~i~iG~~~~~f~~~   98 (99)
T d2ff4a3          74 IR--SAVTLNDGDHIRICDHEFTFQIS   98 (99)
T ss_dssp             CS--SEEEECTTCEEEETTEEEEEECS
T ss_pred             CC--CCEECCCCCEEEECCEEEEEEEE
T ss_conf             48--85699999999999999999992

>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=1.6e-11  Score=88.68  Aligned_cols=85  Identities=21%  Similarity=0.286  Sum_probs=72.0

Q ss_pred             ECCCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECCCCCEEECCEECCCCCCCCCCCCCEEEEC-
Q ss_conf             1069089779999998310048989975000210022254899599995234975978677199993126999937886-
Q 003567          701 IKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIR-  779 (810)
Q Consensus       701 Irs~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlGKngI~VNGk~I~~G~~~~L~sgsLIEIg-  779 (810)
                      ..+...+|||+.   ..|+-|   .....|||+||.|.++.++.|++...++||+||||.++.+++.+.|.+|+.|+|| 
T Consensus        33 ~~~~~~~iGR~~---~~d~~l---~d~~~VSr~Ha~i~~~~~~~~~~d~~S~NGT~vNg~~l~~~~~~~L~~GD~I~iG~  106 (127)
T d1g6ga_          33 SIKKVWTFGRNP---ACDYHL---GNISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGV  106 (127)
T ss_dssp             SCCEEEEEESST---TSSEEC---CSCTTSCSSCEEEEECTTSCEEEEECCSSCCEETTEECCTTCCEECCTTCEEEECT
T ss_pred             CCCCCEEECCCC---CCCCCC---CCCCHHHHHHHHEEECCCEEEEEECCCCCEEEECCEEECCCCEEECCCCCEEEECC
T ss_conf             288338973684---467168---99514509998703016479999999966047998894599878938999999798


Q ss_pred             -----CEEEEEEECHHH
Q ss_conf             -----908999929476
Q 003567          780 -----GLAFIFETNQTC  791 (810)
Q Consensus       780 -----gi~fiFllN~~l  791 (810)
                           -++|+|.+|...
T Consensus       107 ~~~~~~v~~~~~~~~~f  123 (127)
T d1g6ga_         107 GVESDILSLVIFINDKF  123 (127)
T ss_dssp             TSGGGCEEEEEEECHHH
T ss_pred             CCCCCEEEEEEEECCHH
T ss_conf             88776699999986767

>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.18  E-value=4.1e-11  Score=86.09  Aligned_cols=83  Identities=23%  Similarity=0.392  Sum_probs=68.1

Q ss_pred             EEEEC-CCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECC-CCCEEECCEECCCCCCCCCCCCCE
Q ss_conf             57510-6908977999999831004898997500021002225489959999523-497597867719999312699993
Q 003567          698 KHYIK-KPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVPPRQSQGLGSSCL  775 (810)
Q Consensus       698 ~YyIr-s~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlG-KngI~VNGk~I~~G~~~~L~sgsL  775 (810)
                      +|.+. ...++|||....+  ||-|    +...|||+||.|.++ ++.|+|+.+| +|++||||+++.++..+.|.++++
T Consensus        26 ~~~l~~~~~~~iGR~~~~~--di~l----~d~~VSr~Ha~i~~~-~~~~~i~Dl~S~nGT~vng~~l~~~~~~~L~~Gd~   98 (118)
T d1uhta_          26 ALDYKPGSTIRVGRIVRGN--EIAI----KDAGISTKHLRIESD-SGNWVIQDLGSSNGTLLNSNALDPETSVNLGDGDV   98 (118)
T ss_dssp             BCCBCTTCCEEEESSSTTC--SEEC----CSSSSCTTCEEEEEC-SSSEEEECCCCSSCCEESSSBCCTTCEEECCTTEE
T ss_pred             EEEECCCCEEEECCCCCCC--EEEE----CCCCCCHHEEEEEEE-CCEEEEEECCCCCEEEECCEECCCCCEEECCCCCE
T ss_conf             8996899979979977688--1996----962765130399997-99899998898543479999948996789999999


Q ss_pred             EEECCEEEEEEE
Q ss_conf             788690899992
Q 003567          776 IEIRGLAFIFET  787 (810)
Q Consensus       776 IEIggi~fiFll  787 (810)
                      |.||...|+|+.
T Consensus        99 i~lG~~~~~~v~  110 (118)
T d1uhta_          99 IKLGEYTSILVN  110 (118)
T ss_dssp             EEETTTEEEEEE
T ss_pred             EEECCEEEEEEE
T ss_conf             999999999998

>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Polynucleotide kinase 3'-phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.9e-11  Score=85.06  Aligned_cols=83  Identities=19%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             EEEEECCCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECC-CCCEEEEECCCCCEEECCEECCCCCCCCCCCCCE
Q ss_conf             057510690897799999983100489899750002100222548-9959999523497597867719999312699993
Q 003567          697 SKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE-AGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCL  775 (810)
Q Consensus       697 ~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~-dg~F~L~NlGKngI~VNGk~I~~G~~~~L~sgsL  775 (810)
                      +.+......++|||+.+   .+|+      ..+|||+||.|..+. ++.|++..+|+||.||||+++.+++++.|.+|++
T Consensus        15 i~l~~~~~~~~iGR~~~---~~i~------d~~vSr~Ha~i~~~~~~~~~~v~~~s~Ngt~vNg~~l~~~~~~~L~~GD~   85 (101)
T d2brfa1          15 IFLPSDGQALVLGRGPL---TQVT------DRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDT   85 (101)
T ss_dssp             EECCSTTCCEEECSBTT---TTBC------CTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CBCCTTCEEEEETTCE
T ss_pred             EEEECCCCEEECCCCCC---CCCC------CCCCCHHHEEEEECCCCEEEEEECCCCCCEEEEEEEECCCEEEECCCCCE
T ss_conf             89846997697166755---6533------78819426699853674069998377755089999922550659999999


Q ss_pred             EEECCEEEEEEEC
Q ss_conf             7886908999929
Q 003567          776 IEIRGLAFIFETN  788 (810)
Q Consensus       776 IEIggi~fiFllN  788 (810)
                      |+|+.-.|.|.+-
T Consensus        86 i~l~~~~~~y~v~   98 (101)
T d2brfa1          86 LYLVNGLHPLTLR   98 (101)
T ss_dssp             EEEETTEEEEEEE
T ss_pred             EEECCCEEEEEEE
T ss_conf             9995880889999

>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Chk2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.2e-11  Score=84.17  Aligned_cols=87  Identities=13%  Similarity=0.035  Sum_probs=68.8

Q ss_pred             EEEEECCCEEEECCCCCCCCCCE---ECCCCCCCCCCHHHCEEEEECC----CCCEEEEECCCCCEEECCEECCCCCCCC
Q ss_conf             05751069089779999998310---0489899750002100222548----9959999523497597867719999312
Q 003567          697 SKHYIKKPEVLLGRATEDVVVDI---DLGREGRTNKISRRQAMINMDE----AGSFHLKNLGKCPILVNNKEVPPRQSQG  769 (810)
Q Consensus       697 ~~YyIrs~eVtIGRsT~~~~VDI---DLs~EGpa~kISRrQA~Ikl~~----dg~F~L~NlGKngI~VNGk~I~~G~~~~  769 (810)
                      -.+.+.+.+++|||++. +.+-+   +++..+....|||+||+|..+.    ++.|+|.+.++||+||||+.+.++.++.
T Consensus        13 ~~~~L~~~~~~iGR~~~-cdi~l~~~~~~~~~~~~~ISr~H~~I~~~~~~~~~~~~~i~d~S~NGT~vN~~~i~~~~~~~   91 (116)
T d1gxca_          13 ANLECVNDNYWFGRDKS-CEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTELVGKGKRRP   91 (116)
T ss_dssp             CCEEECSSEEEEESSTT-CSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSCEEETTEECCTTCEEE
T ss_pred             CEEEECCCCEEEEECCC-CCEEECCCCCCCCCCCCEEECCEEEEEEECCCCCCCEEEEECCCCCCCEECCEECCCCCEEE
T ss_conf             63885888789615777-87584487323433343372314999994256898789997898657469998967997788


Q ss_pred             CCCCCEEEECCEEEE
Q ss_conf             699993788690899
Q 003567          770 LGSSCLIEIRGLAFI  784 (810)
Q Consensus       770 L~sgsLIEIggi~fi  784 (810)
                      |.+|++|.||...+.
T Consensus        92 L~~gD~I~ig~~~~~  106 (116)
T d1gxca_          92 LNNNSEIALSLSRNK  106 (116)
T ss_dssp             CCTTEEEEESSTTCE
T ss_pred             CCCCCEEEECCCEEE
T ss_conf             899999998997748

>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Antigen ki-67
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.7e-10  Score=80.85  Aligned_cols=81  Identities=22%  Similarity=0.343  Sum_probs=69.2

Q ss_pred             EEEEECCCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECCC-CCEEECCEECCCCCCCCCCCCCE
Q ss_conf             05751069089779999998310048989975000210022254899599995234-97597867719999312699993
Q 003567          697 SKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGK-CPILVNNKEVPPRQSQGLGSSCL  775 (810)
Q Consensus       697 ~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlGK-ngI~VNGk~I~~G~~~~L~sgsL  775 (810)
                      -+|.+....++|||+..   .||-|    +...|||+||.|.++ .+.|+|++++. +++||||+++.  +.+.|.+|++
T Consensus        16 ~~~~L~~~~~~IGr~~~---~di~l----~~~~is~~Ha~i~~~-~~~~~i~d~~s~ng~~vNg~~l~--~~~~L~~Gd~   85 (98)
T d2affa1          16 PHFPLSLSTCLFGRGIE---CDIRI----QLPVVSKQHCKIEIH-EQEAILHNFSSTNPTQVNGSVID--EPVRLKHGDV   85 (98)
T ss_dssp             EEEECCSSEEEEESSTT---SSEEE----CCTTSCSSBEEEEEC-SSCEEEEECCSSSCCEETTEECS--SCEEECTTCE
T ss_pred             EEEEECCCCEEEEECCC---CCEEE----CCCCCCCEEEEEEEE-CCEEEEEECCCCCCCEECCEECC--CCEECCCCCE
T ss_conf             19997998889801878---98995----898827103999995-89899998997644169999988--8469899989


Q ss_pred             EEECCEEEEEEE
Q ss_conf             788690899992
Q 003567          776 IEIRGLAFIFET  787 (810)
Q Consensus       776 IEIggi~fiFll  787 (810)
                      |.||+..|+|.-
T Consensus        86 I~iG~~~~~fe~   97 (98)
T d2affa1          86 ITIIDRSFRYEN   97 (98)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEECCEEEEEEE
T ss_conf             999999999973

>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Cell cycle checkpoint protein Chfr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.8e-10  Score=82.04  Aligned_cols=78  Identities=21%  Similarity=0.306  Sum_probs=65.9

Q ss_pred             CEEEEECCCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCC-CCEEEEECCCCCEEECCEECCCCCCCCCCCCC
Q ss_conf             30575106908977999999831004898997500021002225489-95999952349759786771999931269999
Q 003567          696 HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLKNLGKCPILVNNKEVPPRQSQGLGSSC  774 (810)
Q Consensus       696 ~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-g~F~L~NlGKngI~VNGk~I~~G~~~~L~sgs  774 (810)
                      ...+.+.+.+++|||...   .||-|.   ....|||+||.|+++.+ +.|++...++||+||||+++.+++++.|++|+
T Consensus        16 ~~~~~l~~~~~~iGR~~~---~di~l~---d~~~iSr~Ha~I~~~~~~~~~~~~d~S~nGT~vNg~~i~~~~~~~L~~GD   89 (113)
T d1lgpa_          16 EPHVLLRKREWTIGRRRG---CDLSFP---SNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGD   89 (113)
T ss_dssp             SCCEEECSSEEEEESSTT---SSEECT---TCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCCCCCCCSSCCCCCTTC
T ss_pred             CEEEEECCCCEEECCCCC---CCEEEC---CCCCCCHHHEEEEECCCEEEEEECCCCCEEEEECCEECCCCCEEECCCCC
T ss_conf             548996998784188977---876804---88876959929987054036873089864568999995789468989999


Q ss_pred             EEEEC
Q ss_conf             37886
Q 003567          775 LIEIR  779 (810)
Q Consensus       775 LIEIg  779 (810)
                      +|.|+
T Consensus        90 ~I~i~   94 (113)
T d1lgpa_          90 VIYLV   94 (113)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             99996

>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Kinase associated protein phosphatase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.08  E-value=2.3e-10  Score=81.28  Aligned_cols=92  Identities=21%  Similarity=0.335  Sum_probs=69.0

Q ss_pred             EEEEEECC--EEEEECC-----CEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECC-CCCEEEEECC-CCCEEECC
Q ss_conf             39998443--0575106-----90897799999983100489899750002100222548-9959999523-49759786
Q 003567          689 FAILYGRH--SKHYIKK-----PEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE-AGSFHLKNLG-KCPILVNN  759 (810)
Q Consensus       689 lAvL~Gr~--~~YyIrs-----~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~-dg~F~L~NlG-KngI~VNG  759 (810)
                      |.++.|..  .+|.+..     ..++|||...   -||=|    +...|||+||.|.++. ++.|||.++| +||+||||
T Consensus         8 L~vi~Gp~~g~~~~l~~~~~~~~~~~IGR~~~---~di~l----~d~~vSr~Ha~i~~~~~~~~~~v~DlgS~nGT~vNg   80 (122)
T d1mzka_           8 LEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSP---SDLAL----KDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNS   80 (122)
T ss_dssp             EEECSSTTCSCEEEECTTCSTTCSEEEESSSS---CSEEC----CCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETT
T ss_pred             EEEEECCCCCCEEEECCCCCCCCCEEECCCCC---CCEEE----CCCCCCCCCEEEEEECCCCEEEEEECCCCCCEEECC
T ss_conf             99998888884899467877768799558989---88998----898867332599996898979995289877459999


Q ss_pred             EECC--------CCCCCCCCCCCEEEECCEEEEEEE
Q ss_conf             7719--------999312699993788690899992
Q 003567          760 KEVP--------PRQSQGLGSSCLIEIRGLAFIFET  787 (810)
Q Consensus       760 k~I~--------~G~~~~L~sgsLIEIggi~fiFll  787 (810)
                      +++.        +|.++.|.+|++|.||...++|+-
T Consensus        81 ~~i~~~~~~~~~~g~~~~L~~gd~i~iG~~~~~~v~  116 (122)
T d1mzka_          81 HSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVR  116 (122)
T ss_dssp             EESSCCCTTTCCCCCCEECCTTEEEECSSSCEEEEE
T ss_pred             EECCCCCCCCCCCCCEEECCCCCEEEECCEEEEEEE
T ss_conf             997454345456896588689999998992899999

>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Afadin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=6.4e-09  Score=72.10  Aligned_cols=85  Identities=14%  Similarity=0.124  Sum_probs=68.0

Q ss_pred             CEEEEECCCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECCC-CCEEECCEECCCCCCCCCCCCC
Q ss_conf             305751069089779999998310048989975000210022254899599995234-9759786771999931269999
Q 003567          696 HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGK-CPILVNNKEVPPRQSQGLGSSC  774 (810)
Q Consensus       696 ~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlGK-ngI~VNGk~I~~G~~~~L~sgs  774 (810)
                      -..|+++...++|||.... ..||-|  .|  ..|||+||.|... ++.|+|+.++. +++||||++|.  +++.|.+|+
T Consensus        21 ~~~~~l~~~~~~iG~~rs~-~~dI~L--~~--~~Vs~~Ha~i~~~-~~~~~l~d~~s~~gt~vng~~v~--~~~~L~~gd   92 (107)
T d1wlna1          21 PKLYRLQLSVTEVGTEKFD-DNSIQL--FG--PGIQPHHCDLTNM-DGVVTVTPRSMDAETYVDGQRIS--ETTMLQSGM   92 (107)
T ss_dssp             CCEEECCSEEEECSSSCCS-TTCCCC--CC--TTCCSSCEEEEES-SSCEEEEESCSSSCEEETSCBCS--SCEEECTTC
T ss_pred             CEEEEECCCCEEECCCCCC-CCCEEE--CC--CCEEEEEEEEEEC-CCCCEEECCCCCCCEEECCCCCC--CEEECCCCC
T ss_conf             4899979998799998789-984998--99--6533219999972-46319952788863299520236--406999999


Q ss_pred             EEEECCEE-EEEEEC
Q ss_conf             37886908-999929
Q 003567          775 LIEIRGLA-FIFETN  788 (810)
Q Consensus       775 LIEIggi~-fiFllN  788 (810)
                      .|.||... |+|.-|
T Consensus        93 ~i~iG~~~~Frf~~P  107 (107)
T d1wlna1          93 RLQFGTSHVFKFVDP  107 (107)
T ss_dssp             EEEETTTEEEEEECS
T ss_pred             EEEECCCEEEEEECC
T ss_conf             999899629999594

>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Kinesin-like protein kif1c
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.6e-08  Score=69.59  Aligned_cols=80  Identities=20%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             CEEEEECCCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCC---CCEEEEECCC-CCEEECCEECCCCCCCCCC
Q ss_conf             30575106908977999999831004898997500021002225489---9599995234-9759786771999931269
Q 003567          696 HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEA---GSFHLKNLGK-CPILVNNKEVPPRQSQGLG  771 (810)
Q Consensus       696 ~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d---g~F~L~NlGK-ngI~VNGk~I~~G~~~~L~  771 (810)
                      ...|+++..+.+|||.    ..||-|.    ...|||+||+|....+   ..|+|...+. +++||||++|.  .++.|.
T Consensus        16 ~~~y~l~~~~~~iGr~----~~dI~l~----~~~vs~~Ha~i~~~~~~~~~~~~i~d~~s~~gt~VNg~~i~--~~~~L~   85 (102)
T d2g1la1          16 CLLYHIKDGVTRVGQV----DMDIKLT----GQFIREQHCLFRSIPQPDGEVVVTLEPCEGAETYVNGKLVT--EPLVLK   85 (102)
T ss_dssp             CCEEECCSEEEEEESS----SCSEECC----CTTCCSEEEEEEEEECTTSCEEEEEEECTTCCEEETTEECC--SCEECC
T ss_pred             EEEEECCCCCEECCCC----CCCEEEC----CCCEEEEEEEEEEEECCCCCEEEEECCCCCCCEEECCEECC--CEEECC
T ss_conf             2999828985779999----7478864----43111002699998868894799863898888089986926--516968


Q ss_pred             CCCEEEECCEE-EEE
Q ss_conf             99937886908-999
Q 003567          772 SSCLIEIRGLA-FIF  785 (810)
Q Consensus       772 sgsLIEIggi~-fiF  785 (810)
                      +|+.|.||... |+|
T Consensus        86 ~gD~I~~G~~~~frf  100 (102)
T d2g1la1          86 SGNRIVMGKNHVFRF  100 (102)
T ss_dssp             TTCEEEETTTEEEEE
T ss_pred             CCCEEEECCCEEEEE
T ss_conf             999999899889998

>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=1.4e-08  Score=69.91  Aligned_cols=97  Identities=20%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             CCCEEEEEEC-----CEEEEEC--CCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECC--------------CCC
Q ss_conf             8613999844-----3057510--690897799999983100489899750002100222548--------------995
Q 003567          686 HGAFAILYGR-----HSKHYIK--KPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE--------------AGS  744 (810)
Q Consensus       686 ~~AlAvL~Gr-----~~~YyIr--s~eVtIGRsT~~~~VDIDLs~EGpa~kISRrQA~Ikl~~--------------dg~  744 (810)
                      .+.|..|.-.     .-.+.+.  +..++|||...   .||=+    ....|||+||+|.++.              ...
T Consensus         2 ~~~f~~L~~l~~~~~~~~i~i~~~~~~~~iGR~~~---~d~~i----~~~~vS~~H~~I~~~~~~~~~~~~~~~~~~~~~   74 (158)
T d1dmza_           2 NGRFLTLKPLPDSIIQESLEIQQGVNPFFIGRSED---CNCKI----EDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDD   74 (158)
T ss_dssp             CSCCEEEEECTTSSCCCCEEETTSCSCEEEESSTT---SSEEC----CCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEE
T ss_pred             CCEEEEEEECCCCCCCEEEEECCCCCCEEECCCCC---CCEEE----CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             96169999816987530699716997679668867---66897----987626761699995166642001234467873


Q ss_pred             EEEEECCCCCEEECCEECCCCCCCCCCCCCEEEECC-------EEEEEEECH
Q ss_conf             999952349759786771999931269999378869-------089999294
Q 003567          745 FHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRG-------LAFIFETNQ  789 (810)
Q Consensus       745 F~L~NlGKngI~VNGk~I~~G~~~~L~sgsLIEIgg-------i~fiFllN~  789 (810)
                      +||..+++||+||||+.+.++.++.|.+|+.|.|+.       +.|.+.++.
T Consensus        75 ~~l~D~S~NGt~vN~~~~~~~~~~~l~~gD~i~~~~~~~~~~~i~f~~~~~~  126 (158)
T d1dmza_          75 IWYCHTGTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEIND  126 (158)
T ss_dssp             EEEEECSTTCCEETTEECCSSEEEECCSSCCEESCCCTTTTCCCCEEEECSC
T ss_pred             EEEEECCCCCEEECCEECCCCCEEECCCCCEEEECCCCCCCEEEEEEEEECC
T ss_conf             8998568898089999937896088889999999248876468999998425