Citrus Sinensis ID: 003570

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810

MDGATDQRYIEENEDKDQQSNCNTQDQNFAEDALESCWDGNSDQNNQEDPASLQSPLRQNSVPQQGTVDAIKTHNHAHRRSNTDWSVGSISDGSLAESTNSPDDNLGSDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERLRKGQKKLNKAELETSDNRIAVDEYRHMIRKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLKNGKRN

ccccccHHHcHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHcHHHHHHcccccccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

ccccccccEEEcccccccccccccccccccHHHHccccccccccccccccHHHccccccccccccccEcccccHHHHHHccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

MDGATDQRYIEenedkdqqsncntqdqNFAEDALEscwdgnsdqnnqedpaslqsplrqnsvpqqgtvdaikthnhahrrsntdwsvgsisdgslaestnspddnlgsdgsvEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSskleesklvREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSlikdqngvklQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNlsehgkrrddnkpkvstgetDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGkglkkyggpvsdaQMTSMKERLRKGQKKLNKaeletsdnriaVDEYRHMIrkgetcsekGVTAlashssdegnfTEVLMEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLKNGKRN

mdgatdqryieenedkdqqsncNTQDQNFAEDALESCWDGNSDQNNQEDPASLQSPLRQNSVPQQGTVDAIKthnhahrrsntdwsvgSISDGSLAEstnspddnlgsdgSVEKLKNEIAVMMRQVELSELELLSLRKQVAkeskraqdqtrqiislsserdalTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISslsskleesklVREDQLALEALakernkdkevdMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKiqqqesmksreCIESLATIkelesqseRLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIraeeelrktrwkntvtaerlqdefrrLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEqynlsehgkrrddnkpkvstgetdmliqkWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDelqkkkeeinrtgkglkkyggpvsdaQMTSMKERLRkgqkklnkaeletsdnriavdeYRHMIRKGETCSEKGVTALashssdegnftEVLMEVSLLKEKNKRMETELKEMQERYSEISLKfaevegerqqlvmtvrnlkngkrn

MDGATDQRYIEENEDKDQQSNCNTQDQNFAEDALESCWDGNSDQNNQEDPASLQSPLRQNSVPQQGTVDAIKTHNHAHRRSNTDWSVGSISDGSLAESTNSPDDNLGSDGSVEKLKNEIAVMMRQVelselellslRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEIsslsskleesklVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTeqeqrairaeeeLRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFqlkdelqkkkeeINRTGKGLKKYGGPVSDAQMTSMKERLRKGQKKLNKAELETSDNRIAVDEYRHMIRKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLKNGKRN

*********************************************************************************************************************************************************************I*C**********I**************FL*******************************LILAVK**********************************************************EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCL*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

MDGATDQRYIEE**********NTQDQNFAEDALESCWDGNSD*********************QGTVDAIKTHNHAHRRSNTDWSVGSISDGSLAESTNSPDDNLGSDGSVEKLKNEIAVMMRQVELSELELLSLRKQ************RQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLE***********ECIESLATIKELE*******************SLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLS****************ETDMLIQKWNRERDDLEKK************EELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVS*********************ELETSDNRIAVDEYRHMIRKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLKNGKRN

********************************************************************************************************NLGSDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERLRKGQKKLNKAELETSDNRIAVDEYRHMIRKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLK*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MDGATDQRYIEENEDKDQQSNCNTQDQNFAEDALESCWDGNSDQNNQEDPASLQSPLRQNSVPQQGTVDAIKTHNHAHRRSNTDWSVGSISDGSLAESTNSPDDNLGSDGSxxxxxxxxxxxxxxxxxxxxxLLSLRKQVAKESKRAQDQTRQxxxxxxxxxxxxxxxxxxxxxNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxESMKSRExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTExxxxxxxxxxxxxxxxxxxxxxxxxxxxNGVKxxxxxxxxxxxxxxxxxxxxxLDHSSSQLIDEHKSEAQKxxxxxxxxxxxxxxxxxxxxxQYNLSEHGKRRDDNKPKVSTGETDMLxxxxxxxxxxxxxxxxxxxxxxxxxxxxLISMRSLKGENEMLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKGLKKYGGPVSDAQxxxxxxxxxxxxxxxxxxxxxTSDNRIAVDEYRHMIRKGETCSEKGVTALASHSSDEGNFTEVLMExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRQQLVMTVRNLKNGKRN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		810
225470173		1003	PREDICTED: uncharacterized protein LOC10	0.987	0.797	0.492	0.0
359474019		1071	PREDICTED: uncharacterized protein LOC10	0.945	0.715	0.461	1e-169
255539459		920	ATP binding protein, putative [Ricinus c	0.919	0.809	0.484	1e-166
302143890		930	unnamed protein product [Vitis vinifera]	0.902	0.786	0.454	1e-166
224134829		694	predicted protein [Populus trichocarpa]	0.769	0.897	0.518	1e-153
224122362		1128	predicted protein [Populus trichocarpa]	0.809	0.581	0.486	1e-145
356528120		1054	PREDICTED: uncharacterized protein LOC10	0.945	0.726	0.434	1e-144
356528122		1087	PREDICTED: uncharacterized protein LOC10	0.945	0.704	0.424	1e-143
449461249		1025	PREDICTED: uncharacterized protein LOC10	0.961	0.76	0.428	1e-139
449457662		1076	PREDICTED: uncharacterized protein LOC10	0.935	0.704	0.408	1e-134

>gi\|225470173\|ref\|XP_002268024.1\| PREDICTED: uncharacterized protein LOC100248827 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/873 (49%), Positives = 576/873 (65%), Gaps = 73/873 (8%)

Query: 10   IEENEDKDQQSNCNTQDQNFAEDA------LESCWD-GNSDQNNQEDPASLQSPLRQNSV 62
            I  +ED D+ ++ N +++NF  +         +  D G  +     +P SL SPLRQ+S 
Sbjct: 132  ILHDEDLDRITSQNGENKNFRVNCGSYATLTPTAQDLGLKNATTHRNPNSLLSPLRQSSR 191

Query: 63   PQQGTVDAIKTHNHAHRRSNTDWSVGSISDGSLAESTNSPDDNLG------SDGSVEKLK 116
            PQ+GT+ A    +  H RSNTD+SVGS SDGS+ +STNS +DN        SD + EKLK
Sbjct: 192  PQEGTIAATTRKDRMHWRSNTDFSVGSASDGSMIDSTNSAEDNFPGGFKEDSDSTTEKLK 251

Query: 117  NEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK-QN 175
            +E   ++RQ ELSELEL SLRKQ+AKE KR QD TR+ + L  ERDAL  ECEQL+  + 
Sbjct: 252  SENFNLLRQAELSELELQSLRKQIAKECKRGQDLTRKNVGLKEERDALKEECEQLKSMKK 311

Query: 176  SIDIAEIERRLQSE-EHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDL 234
             I+  E+  RL  E E  + L EE+R+EL+YEK+++ +LRLQL+KTQDSN+ELI+AV+DL
Sbjct: 312  CINDEELSDRLTFEREASRVLLEEMRKELDYEKDLNRNLRLQLQKTQDSNSELIIAVRDL 371

Query: 235  NEMLEQKNMEISSLSSKLE--------ESKLVR------EDQLALEALAKERNKDKEVDM 280
             EMLE +N EI  L   +E        E+K+ +      EDQ ALE L +E+   KEV +
Sbjct: 372  EEMLEPRNKEIFQLFGDIENREKSDDVEAKISKLKMNKNEDQEALEELVEEQIDAKEVGV 431

Query: 281  LKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMK-SR 339
            L++K+ D   EI+  +K  E+LE+++ QL  D +VL+QE Q + S LE+ Q+QE MK   
Sbjct: 432  LQKKMTDLHGEIEVHRKDREELEMHMAQLALDNEVLKQEKQNI-STLEQYQKQELMKIQN 490

Query: 340  ECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFED 399
            E   SLATIKELESQ ERLE +IK+Q+++ SES  ++NEL+ QVK L++EL+KQAQ FED
Sbjct: 491  ELSASLATIKELESQVERLEKEIKKQAQKLSESSNAVNELQMQVKSLEKELEKQAQGFED 550

Query: 400  DIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAM 459
            D++A+T AK EQEQRAIRAEE LRKTRW N  +AERLQ+EFRR+SV+M SKFDENEK+AM
Sbjct: 551  DLEAMTRAKIEQEQRAIRAEETLRKTRWNNAQSAERLQEEFRRISVEMTSKFDENEKVAM 610

Query: 460  KAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELD 519
            KA+TEAN+ R+QK  LEEMLQKAN+E+ LIKDQ  VKLQELS++++ K KQI+KM L+LD
Sbjct: 611  KAVTEANDLRVQKRILEEMLQKANEEIGLIKDQYDVKLQELSNEVDLKTKQIEKMTLDLD 670

Query: 520  HSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG----KRRDD-NKPKV 574
                QL    K E +KHEA   EI MLR EIE++  E+  LSE      K RD+  + K 
Sbjct: 671  KKPKQLEYAEKQEGEKHEASFAEIQMLRAEIERITSEKKTLSEQVEEKEKFRDEMEQMKT 730

Query: 575  STGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVEN 634
            + GET+ LI++ N E+ +LE+KFAS  +EA K  E+L +M  +K +NE LIG+LQ+E++N
Sbjct: 731  AIGETERLIKRQNEEKAELERKFASVMKEAEKVQEDLHTMTCMKDDNETLIGSLQSELDN 790

Query: 635  LKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRT--------GKGLKKYGG 686
            LK Q ++L+N L +E LEK+NL +QVFQLK +L+KK+E +  T        G+     G 
Sbjct: 791  LKPQYSELKNLLFQEVLEKENLMQQVFQLKGDLEKKEEVVAVTENTGKDNNGQATLSDGT 850

Query: 687  PVSDAQMTSMKERLRKGQKKLNKAELETSDNRIAVDEY---------------RHMI--- 728
              +   M  +  R    +++  K   E  +      ++               + M+   
Sbjct: 851  QATATTMEQLNHRTTICEEQFQKEAREAGNVTALASQHEEGENTGGDLLNPGMKSMVCLS 910

Query: 729  -----------RKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRMETELKEMQ 777
                       R  ET SEK +T    H++DE N TE+L EV+LLKE+NK ME ELKEM+
Sbjct: 911  VQNEMGTTSVQRNVETYSEKEMTVSIFHTNDESNLTELLAEVALLKERNKSMEGELKEMR 970

Query: 778  ERYSEISLKFAEVEGERQQLVMTVRNLKNGKRN 810
            ERYSEISLKFAEVEGERQQLVMTVRNLKNGK++
Sbjct: 971  ERYSEISLKFAEVEGERQQLVMTVRNLKNGKKS 1003

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359474019\|ref\|XP_002269404.2\| PREDICTED: uncharacterized protein LOC100261513 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255539459\|ref\|XP_002510794.1\| ATP binding protein, putative [Ricinus communis] gi\|223549909\|gb\|EEF51396.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|302143890\|emb\|CBI22751.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224134829\|ref\|XP_002321915.1\| predicted protein [Populus trichocarpa] gi\|222868911\|gb\|EEF06042.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224122362\|ref\|XP_002318816.1\| predicted protein [Populus trichocarpa] gi\|222859489\|gb\|EEE97036.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356528120\|ref\|XP_003532653.1\| PREDICTED: uncharacterized protein LOC100819574 isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356528122\|ref\|XP_003532654.1\| PREDICTED: uncharacterized protein LOC100819574 isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|449461249\|ref\|XP_004148354.1\| PREDICTED: uncharacterized protein LOC101208579 [Cucumis sativus] gi\|449505214\|ref\|XP_004162407.1\| PREDICTED: uncharacterized LOC101208579 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449457662\|ref\|XP_004146567.1\| PREDICTED: uncharacterized protein LOC101221081 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		810
TAIR\|locus:2038446		1029	AT1G63300 "AT1G63300" [Arabido	0.872	0.687	0.380	5.7e-107
TAIR\|locus:2145141		853	AT5G52280 "AT5G52280" [Arabido	0.772	0.733	0.368	5e-92
TAIR\|locus:2162996		983	AT5G41140 "AT5G41140" [Arabido	0.696	0.573	0.349	5e-76
UNIPROTKB\|F1NI68		2142	GOLGA4 "Uncharacterized protei	0.824	0.311	0.242	1.7e-22
UNIPROTKB\|F1NMQ0		2150	GOLGA4 "Uncharacterized protei	0.824	0.310	0.242	1.7e-22
DICTYBASE\|DDB_G0290503		1492	DDB_G0290503 [Dictyostelium di	0.927	0.503	0.215	4.8e-22
TAIR\|locus:2030541		1999	AT1G22060 [Arabidopsis thalian	0.670	0.271	0.22	1.7e-20
DICTYBASE\|DDB_G0288069		1082	DDB_G0288069 [Dictyostelium di	0.681	0.510	0.218	6.6e-20
UNIPROTKB\|E1BKZ5		3273	GOLGB1 "Uncharacterized protei	0.766	0.189	0.231	8.6e-20
GENEDB_PFALCIPARUM\|PF11_0218		1544	PF11_0218 "hypothetical protei	0.745	0.391	0.231	8.8e-20

TAIR\|locus:2038446 AT1G63300 "AT1G63300" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 280/735 (38%), Positives = 402/735 (54%)

Query:    78 HRRSNTDWSVGSISDGSLAEST--NSPDDNLGSDGSVEKLKNEIAVMMRQVXXXXXXXXX 135
             H  S+TD S  S +D  +A  T  NS D++      VEKLKNE+  + RQ          
Sbjct:   260 HGISSTDDSTNSSND-IVARDTAINSSDED-----EVEKLKNELVGLTRQADLSELELQS 313

Query:   136 XRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLR-KQNSIDIAEIERRLQSEEHLKF 194
              RKQ+ KE+KR+QD  R++ SL  ERD+L  +CE+ +         +   RLQ E    +
Sbjct:   314 LRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQKVSDKQKGETKTRNRLQFEGRDPW 373

Query:   195 -LQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQK------NMEIXX 247
              L EE REEL+YEK+ + +LRLQLEKTQ+SN+ELILAV+DL EMLE+K      N+E   
Sbjct:   374 VLLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESM 433

Query:   248 XXXXXXXXXXVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIK 307
                          DQ ALE L K+    K+  +L+QKI D  +EI+ +K+  ++LEI ++
Sbjct:   434 RRSCRSETDEDDHDQKALEDLVKKHVDAKDTHILEQKITDLYNEIEIYKRDKDELEIQME 493

Query:   308 QLTEDCQVLEQENQCLTSKLEKIQQQESMKSR-ECIESLATIKELESQSERLEDKIKQQS 366
             QL  D ++L+Q+N  ++ KLE+ Q QE +K + EC  SL  + ELE+Q E LE ++K+QS
Sbjct:   494 QLALDYEILKQQNHDISYKLEQSQLQEQLKIQYECSSSLVDVTELENQVESLEAELKKQS 553

Query:   367 EEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTXXXXXXXXXXXXLRKTR 426
             EE+SESL  I ELE Q++ L+ E++KQAQ FE DIDAVT  K             LRKTR
Sbjct:   554 EEFSESLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEETLRKTR 613

Query:   427 WKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDEL 486
             WKN   A +LQDEF+RLS  M S F  NEK+AMKAMTEANE RMQK  LEEM++ ANDEL
Sbjct:   614 WKNASVAGKLQDEFKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDANDEL 673

Query:   487 SLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHML 546
                + +   KL ELS++L  K  Q+++M   LD  S+++ ++ + E      L+ EI +L
Sbjct:   674 RANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKIL 733

Query:   547 RTEIEKLRKEQYNL---SEHGK--RRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAK 601
             + EIE L+K Q +L   +E  +  R D  K K S  E +  +Q+ N ++ +LE K +  +
Sbjct:   734 KEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMR 793

Query:   602 QEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVF 661
             +E+     EL  ++  K E E  I  LQ E+E ++ Q + L++SL E  LE +   KQV 
Sbjct:   794 KESESLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVA 853

Query:   662 XXXXXXXXXXXXINRTGKGLKKYGGPVSDAQMTSMKERLRKGQKK-LNKAELETSDNRIA 720
                         +    K LK+    ++    T+ +  + KG     +    E +  +  
Sbjct:   854 HVKSELKKKEETMANLEKKLKESRTAITK---TAQRNNINKGSPVGAHGGSKEVAVMKDK 910

Query:   721 VDEYRHMIRKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRMETELKEMQERY 780
             +      I+  ET  E           +  N  E L E  L +   +  E EL   QE  
Sbjct:   911 IKLLEGQIKLKETALESSSNMFIEKEKNLKNRIEEL-ETKLDQNSQEMSENELLNGQEN- 968

Query:   781 SEISLKFAEVEGERQ 795
              +I +  AE+E  R+
Sbjct:   969 EDIGVLVAEIESLRE 983

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2145141 AT5G52280 "AT5G52280" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2162996 AT5G41140 "AT5G41140" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NMQ0 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:2030541 AT1G22060 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0288069 DDB_G0288069 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BKZ5 GOLGB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

GENEDB_PFALCIPARUM\|PF11_0218 PF11_0218 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010505001	SubName- Full=Chromosome undetermined scaffold_265, whole genome shotgun sequence; (882 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		810
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-08
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-06
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	6e-06
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	7e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	1e-04
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	1e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.002
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
PHA02562		562	PHA02562, 46, endonuclease subunit; Provisional	0.003

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 122/592 (20%), Positives = 270/592 (45%), Gaps = 28/592 (4%)

Query: 132 ELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEH 191
           +L  L K+V KE+K   ++    +S   E     +E  +   +    + EI +  Q EE 
Sbjct: 171 KLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEI-QEEQEEEE 229

Query: 192 LKFLQEEIRE---ELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSL 248
           L+   E + E   EL  EKE    L+ +L + +    E +   ++    LE+   E+   
Sbjct: 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEK 289

Query: 249 SSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQ 308
             +LEE  L RE +   E L   R   +E++ L +K++   + ++  ++  E LE  +++
Sbjct: 290 IERLEE--LEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEE 347

Query: 309 LTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEE 368
           L E+     +  + L  +L++++++     +E  ++L  +K+LE   + L++++ + S  
Sbjct: 348 LAEE---KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404

Query: 369 YSESLISINELECQVKELKRELDKQAQE---FEDDIDAVTHAKTEQEQRAIRAEE----- 420
             E    + ELE +++EL+REL++  +E    E+ I+ +   +    + A   E+     
Sbjct: 405 LEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG 464

Query: 421 -ELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEML 479
            EL +   K  +    L+ E     +         EK   +   E  E   +   LEE L
Sbjct: 465 QELPEEHEKELLELYELELEELEEEL-------SREKEEAELREEIEELEKELRELEEEL 517

Query: 480 QKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEAL 539
            +  +    +K++   KL++L + LE+ ++  +K+ L+      + +++   E ++    
Sbjct: 518 IELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEE 577

Query: 540 STEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFAS 599
              +   + E+E+LR+    L +  K  ++   ++      + + +   E ++ E++  S
Sbjct: 578 LRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELES 637

Query: 600 AKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQ 659
             ++     E    +++   E E  +  L+AE+     Q+ + +  L E+  E + L ++
Sbjct: 638 ELEKLNLQAELEELLQAALEELEEKVEELEAEIRREL-QRIENEEQLEEKLEELEQLEEE 696

Query: 660 VFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERLRKGQKKLNKAE 711
           + QL++EL++  +++    + +++       A++  +K+ L K +K L   E
Sbjct: 697 LEQLREELEELLKKLGEIEQLIEELES--RKAELEELKKELEKLEKALELLE 746

Length = 908

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|222878 PHA02562, 46, endonuclease subunit; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		810
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.51
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.48
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.36
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.29
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.29
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.27
PRK02224		880	chromosome segregation protein; Provisional	99.2
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.2
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.12
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.98
PRK03918		880	chromosome segregation protein; Provisional	98.96
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.96
PRK02224		880	chromosome segregation protein; Provisional	98.92
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.9
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.56
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	98.53
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.47
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	98.39
PRK01156		895	chromosome segregation protein; Provisional	98.37
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.37
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	98.36
PRK03918		880	chromosome segregation protein; Provisional	98.28
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.27
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	98.26
PRK01156		895	chromosome segregation protein; Provisional	98.26
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.23
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	98.12
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.09
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	98.05
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.94
KOG0996		1293	consensus Structural maintenance of chromosome pro	97.9
KOG0933		1174	consensus Structural maintenance of chromosome pro	97.84
KOG4673		961	consensus Transcription factor TMF, TATA element m	97.66
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	97.6
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.54
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	97.28
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	97.25
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	97.23
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	97.23
PHA02562		562	46 endonuclease subunit; Provisional	97.18
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	97.01
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	96.8
KOG0964		1200	consensus Structural maintenance of chromosome pro	96.8
PHA02562		562	46 endonuclease subunit; Provisional	96.8
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.77
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.73
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	96.5
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.38
PRK09039		343	hypothetical protein; Validated	96.15
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.13
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.12
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.07
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.03
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	96.03
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	95.96
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	95.75
KOG4807		593	consensus F-actin binding protein, regulates actin	95.49
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	95.48
PRK11637		428	AmiB activator; Provisional	95.4
PRK09039		343	hypothetical protein; Validated	95.29
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	95.13
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.95
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	94.9
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	94.8
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.73
PRK11637		428	AmiB activator; Provisional	94.64
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.53
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.5
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	94.34
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	93.9
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	93.64
KOG0996		1293	consensus Structural maintenance of chromosome pro	93.63
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	93.56
PRK04863		1486	mukB cell division protein MukB; Provisional	93.48
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.25
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	92.97
COG4942		420	Membrane-bound metallopeptidase [Cell division and	92.79
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	92.77
PF14662		193	CCDC155: Coiled-coil region of CCDC155	92.72
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	92.6
KOG0018		1141	consensus Structural maintenance of chromosome pro	92.48
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	92.36
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	92.25
KOG0971		1243	consensus Microtubule-associated protein dynactin	92.22
KOG0971		1243	consensus Microtubule-associated protein dynactin	92.12
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	91.36
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	91.15
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	91.05
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	90.98
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	90.85
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	90.65
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.94
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	89.82
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.78
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	89.57
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	89.22
PF06818		202	Fez1: Fez1; InterPro: IPR009638 This family repres	89.06
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	88.82
PRK04863		1486	mukB cell division protein MukB; Provisional	88.81
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	88.78
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	88.67
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	88.52
PRK04778		569	septation ring formation regulator EzrA; Provision	88.26
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	86.77
PF14662		193	CCDC155: Coiled-coil region of CCDC155	86.55
TIGR03017		444	EpsF chain length determinant protein EpsF. Sequen	86.52
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	86.46
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.26
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	85.84
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	85.79
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	85.25
PF02183		45	HALZ: Homeobox associated leucine zipper; InterPro	84.62
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	83.89
PF09738		302	DUF2051: Double stranded RNA binding protein (DUF2	83.86
PF12795		240	MscS_porin: Mechanosensitive ion channel porin dom	83.65
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	83.63
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	83.14
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	83.12
KOG4809		654	consensus Rab6 GTPase-interacting protein involved	82.31
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	82.1
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	81.9
KOG0933		1174	consensus Structural maintenance of chromosome pro	81.15
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	81.14
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	81.07
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	80.61
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	80.59

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

Probab=99.51  E-value=8e-08  Score=119.91  Aligned_cols=406  Identities=20%  Similarity=0.256  Sum_probs=222.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhhhhhHHHHhhhhhhhh-hhHHHHHHHHHHhhhh
Q 003570          128 LSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEE-HLKFLQEEIREELNYE  206 (810)
Q Consensus       128 ~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk~~~ea~~~~~lq~e~-D~~~llEElr~EL~yE  206 (810)
                      .++.++.-+..++..+..+..+|.++...++.+...++..++.+-.        +..+++.+- .....++.+++|+...
T Consensus       905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~--------~~~k~~~Ek~~~e~~~~~l~~e~~~~  976 (1930)
T KOG0161|consen  905 ELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELEL--------TLQKLELEKNAAENKLKNLEEEINSL  976 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555566666666666666655555555555444443322        122333333 4556677777787777


Q ss_pred             hhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHH
Q 003570          207 KEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIR  286 (810)
Q Consensus       207 KelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~  286 (810)
                      -+.++.|.=-=+-.++.+-+|...++..++++.+.++-...|-..+.+....         |-++..   -...+...+.
T Consensus       977 ~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~---------le~e~~---~r~e~Ek~~r 1044 (1930)
T KOG0161|consen  977 DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVT---------LEREKR---IRMELEKAKR 1044 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH---HHHHHHHHHH
Confidence            7777777555455667788888888888888888888777765544432210         111111   1111222222


Q ss_pred             HhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHh
Q 003570          287 DQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQS  366 (810)
Q Consensus       287 DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~  366 (810)
                      -+-|++-.......++..+.++|...+-...-+=+.+.++++.-+       .+-+-.+..|.+|.+++.-|..+|...+
T Consensus      1045 kle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~-------~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ-------AEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333334444333333333333333333444411       2223345667777777777777777777


Q ss_pred             HHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 003570          367 EEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVD  446 (810)
Q Consensus       367 ~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~q  446 (810)
                      ..-+..=.....|...+..|.++|..+.    ....+....+..++.........|....+....++..|......-..+
T Consensus      1118 ~~r~K~ek~r~dL~~ele~l~~~Lee~~----~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~e 1193 (1930)
T KOG0161|consen 1118 ASRAKAERQRRDLSEELEELKEELEEQG----GTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAE 1193 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            7666666777777777777777777773    334444555566666666666677777777776666665555444444


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH---HhHHHHhhhhhhhhccHHHHhHHHhhHHH-------HHHHHHH
Q 003570          447 MASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQ---KANDELSLIKDQNGVKLQELSDQLEQKDK-------QIQKMYL  516 (810)
Q Consensus       447 msSt~eeNEklt~kA~~EaseLR~qk~~LEemLq---k~neeL~~i~dq~e~kl~eL~~qld~k~k-------~ie~m~~  516 (810)
                      +.+.++.-=+.=.+...+=+.|......|...+.   .....+......|++.|.+|.-.++..+.       +.-.+..
T Consensus      1194 l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~ 1273 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQN 1273 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4444443333333333444444444444443332   33333444444555555555555554444       4556666


Q ss_pred             hhhhchhhhhHHhhhHHHH---HHhHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 003570          517 ELDHSSSQLIDEHKSEAQK---HEALSTEIHMLRTEIEKLRKEQYNLSEHG  564 (810)
Q Consensus       517 Ele~kS~qle~~kk~~ee~---~~a~s~EI~~Lk~eie~L~~e~~~l~e~~  564 (810)
                      |+...+++++.....-...   ..+|..+|+.++.+++.-+...+.|..+.
T Consensus      1274 E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l 1324 (1930)
T KOG0161|consen 1274 ENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENAL 1324 (1930)
T ss_pred             hHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776655533322   34566677777777776666666665554

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>TIGR03017 EpsF chain length determinant protein EpsF	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA	Back alignment and domain information

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		810
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-12
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-12
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	9e-06
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

 Score = 85.7 bits (212), Expect = 3e-17
 Identities = 67/326 (20%), Positives = 131/326 (40%), Gaps = 12/326 (3%)

Query: 364  QQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELR 423
             +     E + + +E   + KE +++ + + +E E     +   K    Q  ++AE EL 
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN-LLQEKLQAETELY 908

Query: 424  KTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQ--- 480
                +  V     + E   +  +M ++ +E E+ + +   E  + + Q   LEE L+   
Sbjct: 909  AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968

Query: 481  KANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLE---LDHSSSQLIDEHKSEAQKHE 537
             A  +L L K     K++++ D +   + Q  K+  E   L+   S L      E +K +
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 538  ALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKF 597
             L+   +   + I +L      L +  K R + +      E +      + +  +L+ + 
Sbjct: 1029 NLTKLKNKHESMISELEVR---LKKEEKSRQELEKIKRKLEGES--SDLHEQIAELQAQI 1083

Query: 598  ASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLA 657
            A  K + AK  EEL +  +   +      N   ++  L+   + LQ  L  EK  ++   
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 658  KQVFQLKDELQKKKEEINRTGKGLKK 683
            KQ   L +EL+  K E+  T      
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTAT 1169

PyMOL of 1i84

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00