Citrus Sinensis ID: 003608

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------81

MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSDLSIIVIL

ccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHc

ccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHcccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcEcccccccHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHc

MDLPSLALILqgalspnpeerKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKnfiaknwaphepneqqkisqvDKDMVRDHILVFVAQVPPLLRVQLGECLKTIihadypeqwpHLLDWVKHNLQDQQVYGALFVLRILSRkyefksdeertpvYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSiyleipkqlldpnvFNAWMILFLNVlerpvpsegepadpeqrkswgwwkvKKWTVHILNRLYTrfgdlklqnpenRAFAQMFQKNYAGKILECHLNLLNrirvggylpdRVTNLILQYLSNSisknsmynllqPRLDVLLFEIVFPlmcfndndqklwdedpheyvRKGYDIIedlysprtasMDFVSELVRKRGKENLQKFIQFIVGIFKrydetpveykpyrqkdgALLAIGALCDklkqtepykSELERMLVQhvfpefsspvghlrAKAAWVAGQYAHINFSDQNNFRKALHSVVsglrdpelpvrvDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNtaeadedaddpgaLAAVGCLRAISTILEsvsrlphlfvqieptLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAidffpnilvpldnyisrgtahfltckepdyqQSLWSMVSSIMadknledgdiepapKLIEVVFQNCkgqvdhwvepYLRITVERLRRAEKSYLKCLLVQVVSFheransdlsIIVIL

MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFiaknwaphepnEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRkyefksdeertpVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSegepadpeqrkswgwwkvKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILesvsrlphlfVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNckgqvdhwvePYLRITVERLRRAEKSYLKCLLVqvvsfheransdlsiivil

MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTaeadedaddpgalaaVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSDLSIIVIL

****************************NQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAP***********VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLE****************SWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSDLSIIVI*

MDLPSLALILQGALSPNP**RKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSDLSIIVIL

MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV************KSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSDLSIIVIL

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		808	2.2.26 [Sep-21-2011]
Q55CX9		1065	Probable importin-7 homol	yes	no	0.945	0.717	0.321	1e-118
Q9EPL8		1038	Importin-7 OS=Mus musculu	yes	no	0.957	0.745	0.312	1e-110
O95373		1038	Importin-7 OS=Homo sapien	yes	no	0.957	0.745	0.313	1e-110
O15397		1037	Importin-8 OS=Homo sapien	no	no	0.969	0.755	0.314	1e-107
Q7TMY7		1010	Importin-8 OS=Mus musculu	no	no	0.955	0.764	0.309	1e-107
O59809		1029	Probable importin c550.11	yes	no	0.956	0.751	0.288	1e-92
P46970		1048	Nonsense-mediated mRNA de	yes	no	0.842	0.649	0.253	8e-55
Q04175		944	Importin beta SMX1 OS=Sac	no	no	0.832	0.712	0.226	2e-37
Q9XZU1		975	Exportin-2 OS=Drosophila	no	no	0.549	0.455	0.231	5e-19
Q6GMY9		971	Exportin-2 OS=Xenopus lae	N/A	no	0.548	0.456	0.223	8e-18

>sp\|Q55CX9\|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1	Back alignment and function desciption

 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/786 (32%), Positives = 442/786 (56%), Gaps = 22/786 (2%)

Query: 9   ILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAK 68
           + Q  L  +    KAAE  L Q + T  +   LL+I+  N  D+S+RQ  SI  KN I  
Sbjct: 10  LFQHTLHHDANVIKAAEAQLQQIKVTDGYSRILLKILASNEVDISIRQGVSIFLKNMIIT 69

Query: 69  NWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLL 128
            W   E  ++  I+Q D + ++++++  +     L++ Q+   ++ I + D+PE+W  LL
Sbjct: 70  KWRGAE--DESPITQEDAEFIKENLIDLLVHSHHLVQNQIEAMIEIIANRDFPEKWTSLL 127

Query: 129 -DWVKH-NLQDQQVYGALFV---LRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRL 183
              +++ N QD ++  A      L I   +Y    D+++  +Y IV E F  LL I   L
Sbjct: 128 PKSIQYINTQDVKLILAGLTSIQLGIKRFRYVTMGDKKKELLYTIVNEIFPLLLQILEFL 187

Query: 184 VQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV-PSEGE 242
            Q  + ++E A + K + KIF  +I+ EIP  L+ P VFN W+  F+ +++RP+ P E  
Sbjct: 188 SQ--HQTIESALMQKKVIKIFGYAIHFEIPDLLIQPEVFNKWLSQFVRIIQRPITPQENV 245

Query: 243 PADPEQRKSWGWWKVKKWTVHILNRLYTRFGD--LKLQNPENRAFAQMFQKNYAGKILEC 300
               + RK+  WW +K+ T  +LN L+ +         +   +A  ++F   Y+ ++++ 
Sbjct: 246 KHADDCRKNQ-WWLLKRTTAKLLNLLFRKSATSVRSTDHSSVKALNKLFMPVYSVEVMKV 304

Query: 301 ---HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCF 357
               L+ L ++  G +  +R    +++Y S +I     Y  ++P L  L+ +++FP++CF
Sbjct: 305 FYEQLSTLEQLYKGVHY-ERYQQKLIEYFSFAIKYGVTYVAMKPWLSTLIQQVLFPIICF 363

Query: 358 NDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIF 417
           ND D +LW+ DP+E++R  ++      + R   ++F+ ++V KRG+ NL   + F +   
Sbjct: 364 NDRDAELWECDPNEFLRSQFESSMTFATARIEVLNFIIDVVGKRGRANLDMIMGFCIQSL 423

Query: 418 KRYDE-TPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476
            +Y+  T    K  R+KDG L+ I  L   LK    YKS LE+ML+ HVFPE SSP G L
Sbjct: 424 NKYNAATNASEKNPREKDGVLVIISVLSAYLKNISFYKSNLEQMLLLHVFPELSSPHGFL 483

Query: 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 536
           +A+A  +  ++ +I F+D   F  AL  ++  + D +LPVRV +  ++ + V A + ++E
Sbjct: 484 KARACSLFSEFYNIEFTDPVYFSNALKLILGLMSDNDLPVRVKAGTSICNLVRANQGVDE 543

Query: 537 IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT 596
           +RPILPQLLD+ F L++E E+EDLV  +E+I+ +F  E+APYA+ LC+NL+  F R +  
Sbjct: 544 LRPILPQLLDKIFSLLSEAESEDLVIAIESIIQRFKHEIAPYAVNLCKNLSEQFLRLLEL 603

Query: 597 AEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFE 656
            E+DE  +     A+  CL    T+L ++  +P +F  +E  ++PI++++ T+D     +
Sbjct: 604 EESDESGE--SGFASQECLGVYCTLLRALKDIPDVFNSLEQQIVPILQKLFTSDHMMYLD 661

Query: 657 EVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTC 716
           E L I++++T++  +IS  +WSL+P +M    + A DF  + + PLDNYIS GT +FL+ 
Sbjct: 662 EALRILTFVTYYPKSISPLVWSLFPQIMNLFDECACDFASSYVNPLDNYISYGTEYFLSN 721

Query: 717 KEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERL 776
           ++  Y + +++M   ++ D N +  D     K++E + Q  KG++D+ + P L +   RL
Sbjct: 722 QQ--YIEMVFNMYKKMVGDINQQPVDAGDCCKIMESLIQRAKGRIDYMIVPVLELACGRL 779

Query: 777 RRAEKS 782
              +K+
Sbjct: 780 LNTDKN 785

May function in nuclear protein import.
Dictyostelium discoideum (taxid: 44689)

>sp\|Q9EPL8\|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2	Back alignment and function description

>sp\|O95373\|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	Back alignment and function description

>sp\|O15397\|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2	Back alignment and function description

>sp\|Q7TMY7\|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=3	Back alignment and function description

>sp\|O59809\|IMA3_SCHPO Probable importin c550.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.11 PE=3 SV=1	Back alignment and function description

>sp\|P46970\|NMD5_YEAST Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD5 PE=1 SV=2	Back alignment and function description

>sp\|Q04175\|SXM1_YEAST Importin beta SMX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SXM1 PE=1 SV=1	Back alignment and function description

>sp\|Q9XZU1\|XPO2_DROME Exportin-2 OS=Drosophila melanogaster GN=Cas PE=2 SV=2	Back alignment and function description

>sp\|Q6GMY9\|XPO2_XENLA Exportin-2 OS=Xenopus laevis GN=cse1l PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		808
255573671		1032	Importin-7, putative [Ricinus communis]	0.998	0.781	0.912	0.0
225433707		1034	PREDICTED: probable importin-7 homolog [	0.998	0.780	0.908	0.0
224128892		1045	predicted protein [Populus trichocarpa]	0.998	0.772	0.898	0.0
356568905		1032	PREDICTED: probable importin-7 homolog [	0.997	0.781	0.894	0.0
224069064		1058	predicted protein [Populus trichocarpa]	0.998	0.762	0.894	0.0
356526625		1032	PREDICTED: probable importin-7 homolog [	0.997	0.781	0.894	0.0
296089630		1080	unnamed protein product [Vitis vinifera]	0.998	0.747	0.859	0.0
357502757		1035	Importin-7 [Medicago truncatula] gi\|3554	0.997	0.778	0.881	0.0
449466697		1029	PREDICTED: probable importin-7 homolog [	0.998	0.784	0.868	0.0
449508466		1029	PREDICTED: probable importin-7 homolog [	0.998	0.784	0.866	0.0

>gi\|255573671\|ref\|XP_002527757.1\| Importin-7, putative [Ricinus communis] gi\|223532844\|gb\|EEF34618.1\| Importin-7, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1540 bits (3988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 736/807 (91%), Positives = 771/807 (95%)

Query: 1   MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASI 60
           MDLPSLAL LQ ALSPNP+ERKAAE +LNQ+QY PQHLVRLLQIIVDN+CD++VRQVASI
Sbjct: 1   MDLPSLALTLQAALSPNPDERKAAEQNLNQYQYAPQHLVRLLQIIVDNSCDMAVRQVASI 60

Query: 61  HFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADY 120
           HFKNFIAKNWAPHEP+EQ KI Q DKDMVRDHILVFV QVPPLLRVQLGECLKTIIHADY
Sbjct: 61  HFKNFIAKNWAPHEPDEQSKILQSDKDMVRDHILVFVVQVPPLLRVQLGECLKTIIHADY 120

Query: 121 PEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIF 180
           PEQWP LLDW+KHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETF HLLNIF
Sbjct: 121 PEQWPRLLDWIKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFPHLLNIF 180

Query: 181 NRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSE 240
           NRLVQI NPSLEVADLIKLICKIFWSSIYLEIPKQL DPNVFNAWM+LFLNVLER VP E
Sbjct: 181 NRLVQIANPSLEVADLIKLICKIFWSSIYLEIPKQLFDPNVFNAWMVLFLNVLERSVPIE 240

Query: 241 GEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILEC 300
           G+P DPE RKSWGWWKVKKWTVHILNRLYTRFGDLKLQN ENRAFAQMFQK+YAGKILEC
Sbjct: 241 GQPVDPELRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNQENRAFAQMFQKSYAGKILEC 300

Query: 301 HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDN 360
           HLNLLN IR+GGYLPDRVTNLILQYLSNSISKNSMY LLQPRLDVLLFEIVFPLMCF+DN
Sbjct: 301 HLNLLNMIRLGGYLPDRVTNLILQYLSNSISKNSMYTLLQPRLDVLLFEIVFPLMCFSDN 360

Query: 361 DQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY 420
           DQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIV IFKRY
Sbjct: 361 DQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVEIFKRY 420

Query: 421 DETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKA 480
           DE PVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKA
Sbjct: 421 DEAPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKA 480

Query: 481 AWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 540
           AWVAGQYAHINFSDQ+NF KALHSVVSGLRDPELPVRVDSVFALRSFVEAC+DLNEIRPI
Sbjct: 481 AWVAGQYAHINFSDQSNFLKALHSVVSGLRDPELPVRVDSVFALRSFVEACKDLNEIRPI 540

Query: 541 LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEAD 600
           LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNL AAFWRCMNTAEAD
Sbjct: 541 LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLGAAFWRCMNTAEAD 600

Query: 601 EDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLE 660
           ++ADDPGALAAVGCLRAISTILESVSRLPHLFVQIEP LLPIMRRMLTTDGQEVFEEVLE
Sbjct: 601 DEADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPILLPIMRRMLTTDGQEVFEEVLE 660

Query: 661 IVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPD 720
           IVSYMTFFSP+ISL+MW+LWPLMMEALA+WAIDFFPNILVPLDNYISRGTAHFL CK+PD
Sbjct: 661 IVSYMTFFSPSISLDMWTLWPLMMEALAEWAIDFFPNILVPLDNYISRGTAHFLACKDPD 720

Query: 721 YQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE 780
           YQQSLW M+SSI+AD+NLED DIEPAPKLIEVVFQNC+GQVD WVEPYLR+TVERL RAE
Sbjct: 721 YQQSLWKMISSILADRNLEDNDIEPAPKLIEVVFQNCRGQVDQWVEPYLRVTVERLNRAE 780

Query: 781 KSYLKCLLVQVVSFHERANSDLSIIVI 807
           KSYLKCLL+QV++     N+ L++ ++
Sbjct: 781 KSYLKCLLMQVIADALYYNAALTLGIL 807

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225433707\|ref\|XP_002268048.1\| PREDICTED: probable importin-7 homolog [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224128892\|ref\|XP_002320447.1\| predicted protein [Populus trichocarpa] gi\|222861220\|gb\|EEE98762.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356568905\|ref\|XP_003552648.1\| PREDICTED: probable importin-7 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|224069064\|ref\|XP_002302891.1\| predicted protein [Populus trichocarpa] gi\|222844617\|gb\|EEE82164.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356526625\|ref\|XP_003531917.1\| PREDICTED: probable importin-7 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|296089630\|emb\|CBI39449.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357502757\|ref\|XP_003621667.1\| Importin-7 [Medicago truncatula] gi\|355496682\|gb\|AES77885.1\| Importin-7 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449466697\|ref\|XP_004151062.1\| PREDICTED: probable importin-7 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449508466\|ref\|XP_004163320.1\| PREDICTED: probable importin-7 homolog [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		808
TAIR\|locus:2065939		1040	SAD2 "AT2G31660" [Arabidopsis	0.998	0.775	0.790	0.0
TAIR\|locus:2077715		1030	AT3G59020 "AT3G59020" [Arabido	0.997	0.782	0.777	0.0
DICTYBASE\|DDB_G0269860		1065	DDB_G0269860 "putative importi	0.948	0.719	0.316	2.6e-111
FB\|FBgn0026252		1049	msk "moleskin" [Drosophila mel	0.954	0.734	0.301	7.2e-107
UNIPROTKB\|E2R703		1036	IPO8 "Uncharacterized protein"	0.969	0.755	0.308	3.2e-104
UNIPROTKB\|E1BGE5		1038	IPO7 "Uncharacterized protein"	0.956	0.744	0.308	1.1e-103
UNIPROTKB\|E2R2C4		1038	IPO7 "Uncharacterized protein"	0.956	0.744	0.308	1.1e-103
UNIPROTKB\|F6X4J2		1038	IPO7 "Uncharacterized protein"	0.956	0.744	0.308	1.1e-103
UNIPROTKB\|O95373		1038	IPO7 "Importin-7" [Homo sapien	0.956	0.744	0.308	1.1e-103
MGI\|MGI:2152414		1038	Ipo7 "importin 7" [Mus musculu	0.956	0.744	0.308	1.1e-103

TAIR\|locus:2065939 SAD2 "AT2G31660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3404 (1203.3 bits), Expect = 0., P = 0.
 Identities = 641/811 (79%), Positives = 723/811 (89%)

Query:     1 MDLPSLALILQ-GALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVAS 59
             MDL SLALIL+  ALSP P+ERK +E  LNQ ++TPQHLVRLLQI VD NCD++VRQ+AS
Sbjct:     1 MDLHSLALILRTAALSPIPDERKVSEQQLNQLEHTPQHLVRLLQIAVDGNCDMAVRQIAS 60

Query:    60 IHFKNFIAKNWAPHE--PN-EQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTII 116
             I FKN IAKNW+P +  P   QQ+I + DK++VRD+ILV+V QVP LLR QLGE LKTII
Sbjct:    61 IQFKNLIAKNWSPEDCGPAVRQQQIFESDKELVRDNILVYVTQVPTLLRSQLGESLKTII 120

Query:   117 HADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHL 176
             +ADYPEQWP LLDWVK+NLQ+QQ+YGALFVLRILSRKYEFKSDEERTPV RIVEETF  L
Sbjct:   121 YADYPEQWPRLLDWVKYNLQNQQIYGALFVLRILSRKYEFKSDEERTPVSRIVEETFPQL 180

Query:   177 LNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236
             L IFN L+QI NPSLE+A+L+KLICKIFWSSIYLE+P+QL D NVFNAWM+LFL+V ERP
Sbjct:   181 LTIFNGLIQIPNPSLEIAELMKLICKIFWSSIYLELPRQLFDLNVFNAWMVLFLSVSERP 240

Query:   237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGK 296
             VP EG+P DPE RKSWGWWKVKKWTVHILNRLY+RFGD KLQ+PEN+ FAQMFQKNYAG+
Sbjct:   241 VPVEGQPMDPELRKSWGWWKVKKWTVHILNRLYSRFGDPKLQSPENKPFAQMFQKNYAGR 300

Query:   297 ILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMC 356
             ILE HLN LN IRVGGYLPDRV NL+LQYLSNSISKNSMY LL PRLDVLLFEIVFPLMC
Sbjct:   301 ILEGHLNFLNTIRVGGYLPDRVINLLLQYLSNSISKNSMYKLLLPRLDVLLFEIVFPLMC 360

Query:   357 FNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGI 416
             FNDNDQKLW+EDPHEYVRKGY+IIEDLYSPRTASMDFV+ELVRKRGKENL KF++F+V I
Sbjct:   361 FNDNDQKLWEEDPHEYVRKGYNIIEDLYSPRTASMDFVNELVRKRGKENLPKFVKFVVEI 420

Query:   417 FKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476
             F  Y++  VE KPYRQKDGA+LA+GALCDKLKQT+PYKS+LE MLVQH+FP+F+SPVGHL
Sbjct:   421 FLSYEKATVEEKPYRQKDGAMLAVGALCDKLKQTDPYKSQLELMLVQHIFPDFNSPVGHL 480

Query:   477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 536
             RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP+LPVRVDSVFALRSFVEAC+DLNE
Sbjct:   481 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPDLPVRVDSVFALRSFVEACKDLNE 540

Query:   537 IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT 596
             IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAP+A GLCQNLAAAFWRC+NT
Sbjct:   541 IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPFAFGLCQNLAAAFWRCLNT 600

Query:   597 XXXXXXXXXXXXXXXVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFE 656
                            VGCLRAISTILESVS LP LFV+IEPT+LPIM++MLTTDGQEVFE
Sbjct:   601 SEANDDSDDMGALAAVGCLRAISTILESVSSLPQLFVEIEPTILPIMQKMLTTDGQEVFE 660

Query:   657 EVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTC 716
             EVLEI SYMTF+SP+ISL++WSLWPLM+EAL DW IDFFPNILVP+DN+ISRGTAHFLTC
Sbjct:   661 EVLEIASYMTFYSPSISLDIWSLWPLMVEALVDWGIDFFPNILVPMDNFISRGTAHFLTC 720

Query:   717 KEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERL 776
             KEPDYQQSL++++S++M D+N+ED +IE APKLIEVVFQNCKGQVD WVEPYLR+TV+RL
Sbjct:   721 KEPDYQQSLYNVLSTLMTDRNIEDSEIESAPKLIEVVFQNCKGQVDQWVEPYLRLTVDRL 780

Query:   777 RRAEKSYLKCLLVQVVSFHERANSDLSIIVI 807
             +RAE SY+K LL+QVV+     N  L++ V+
Sbjct:   781 QRAETSYVKSLLIQVVANMLYYNPGLTLGVL 811

GO:0000059 "protein import into nucleus, docking" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006606 "protein import into nucleus" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0035280 "miRNA loading onto RISC involved in gene silencing by miRNA" evidence=IMP

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR\|locus:2077715 AT3G59020 "AT3G59020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0269860 DDB_G0269860 "putative importin 7" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0026252 msk "moleskin" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R703 IPO8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BGE5 IPO7 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R2C4 IPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F6X4J2 IPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O95373 IPO7 "Importin-7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2152414 Ipo7 "importin 7" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033560001	SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (1034 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014046001	SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_10, whole genome shot [...] (1076 aa)	•	•		0.471
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)	•			0.434
	GSVIVG00008629001	SubName- Full=Chromosome undetermined scaffold_203, whole genome shotgun sequence; (922 aa)	•	•	•	0.430
	GSVIVG00001176001	SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)	•			0.416
	GSVIVG00001918001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa)	•			0.406
	GSVIVG00025547001	RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6; (1518 aa)	•			0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		808
COG5656		970	COG5656, SXM1, Importin, protein involved in nucle	1e-102
COG5657		947	COG5657, CSE1, CAS/CSE protein involved in chromos	6e-16
pfam03810		71	pfam03810, IBN_N, Importin-beta N-terminal domain	5e-13
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	3e-10

>gnl\|CDD\|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  337 bits (865), Expect = e-102
 Identities = 185/763 (24%), Positives = 341/763 (44%), Gaps = 27/763 (3%)

Query: 14  LSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNW--- 70
           L  +  +R  AE  L   +  P  ++ LL I   +  DL+V+  A+I+FKN I ++W   
Sbjct: 13  LDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSK 72

Query: 71  --APHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLL 128
                + +E+ +     K  + ++IL      P + R  L   L  I   D P     L 
Sbjct: 73  RDDGIKADEKSEA----KKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWGLF 128

Query: 129 DWVK---HNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQ 185
                   + +   VY  L  L  L + Y +K ++E+  +  ++   F  L  +   L  
Sbjct: 129 PKAANLLRSSEANHVYTGLLCLEELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLES 188

Query: 186 IVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPAD 245
             N      + + LI K F S  Y  +P  L     F++W  L L +L++P+P+E    D
Sbjct: 189 QGN--YGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPLPNEVLSLD 246

Query: 246 PEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLL 305
           PE R    W K KKW  + L R + R+     +     +F   F       IL      +
Sbjct: 247 PEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSY-LSFYITFM-TRVPMILATFFKQI 304

Query: 306 NRIRVGG-YLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKL 364
                G  +L D     I  ++   +  +  + L++P L  ++  ++FPL+C ++ +++L
Sbjct: 305 EEWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEEL 364

Query: 365 WDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETP 424
           ++ DP EY+R+ YD  ++  SP  A++ F+     KR +E  Q  + F++ I  +   TP
Sbjct: 365 FENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATP 424

Query: 425 VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVA 484
                 RQ +GAL  + ++   + +  P  + +E  +V HV P F S  G L+++A    
Sbjct: 425 SNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFI 484

Query: 485 GQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544
                 +F D     +A  +  + L++  LPV +++  AL+ F+   +   +    +P+ 
Sbjct: 485 STIE-EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPET 543

Query: 545 LDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRC-----MNTAEA 599
           +++   L N  E + L   +E+ V+ F EE++P+A  L  +L   F +       N+++ 
Sbjct: 544 MEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDT 603

Query: 600 DEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVL 659
               DD   +AA G LR I +++ S+   P +   +E +L P++  +L  +  + ++E L
Sbjct: 604 SSVVDDK-QMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEAL 662

Query: 660 EIVSYMTFFSPTISLEMWSLWPLMMEALADW-AIDFFPNILVPLDNYISRGTAHFLTCKE 718
           +I+   TF S  I   MW ++ L++  L D     +   +   LDN+I+ G   F+    
Sbjct: 663 DILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFM--DA 720

Query: 719 PDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQV 761
             Y      +    +  +     D     ++IE +  N + ++
Sbjct: 721 GIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL 763

Length = 970

>gnl\|CDD\|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|217743 pfam03810, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		808
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
COG5656		970	SXM1 Importin, protein involved in nuclear import	100.0
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	100.0
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	100.0
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	100.0
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	100.0
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	100.0
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	99.94
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	99.91
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	99.89
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	99.82
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.75
KOG2081		559	consensus Nuclear transport regulator [Intracellul	99.7
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	99.59
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.55
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	99.45
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	99.4
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.29
KOG1824		1233	consensus TATA-binding protein-interacting protein	99.24
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.88
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.83
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	98.79
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.29
KOG0212		675	consensus Uncharacterized conserved protein [Funct	98.18
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	98.04
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	98.02
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.97
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.92
PTZ00429		746	beta-adaptin; Provisional	97.91
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.81
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.67
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	97.65
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.62
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	97.62
PTZ00429		746	beta-adaptin; Provisional	97.57
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.57
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.56
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	97.54
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	97.38
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.29
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	97.24
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	97.14
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.05
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	97.02
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.98
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.96
KOG0212		675	consensus Uncharacterized conserved protein [Funct	96.95
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	96.91
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.86
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.79
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.76
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	96.56
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	96.52
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	96.5
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	96.44
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.37
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	96.36
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.26
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.16
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	96.01
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.97
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	95.79
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	95.76
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	95.74
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.73
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.68
PRK09687		280	putative lyase; Provisional	95.5
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	95.42
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	95.39
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.38
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	95.29
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	95.19
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	95.18
PRK09687		280	putative lyase; Provisional	95.03
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.74
COG5096		757	Vesicle coat complex, various subunits [Intracellu	94.44
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	94.34
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	93.85
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	93.84
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	93.81
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	93.75
COG5656		970	SXM1 Importin, protein involved in nuclear import	93.73
PF05004		309	IFRD: Interferon-related developmental regulator (	93.59
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	93.46
PF05004		309	IFRD: Interferon-related developmental regulator (	93.45
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	93.34
KOG0414		1251	consensus Chromosome condensation complex Condensi	93.31
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	93.16
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	93.16
KOG4653		982	consensus Uncharacterized conserved protein [Funct	93.08
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	92.85
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	92.84
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	92.52
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	92.03
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	91.11
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	91.1
COG5096		757	Vesicle coat complex, various subunits [Intracellu	91.1
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	90.91
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	90.75
PF05804		708	KAP: Kinesin-associated protein (KAP)	90.16
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	89.97
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	89.95
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	89.68
PF05536		543	Neurochondrin: Neurochondrin	89.53
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	89.49
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	89.2
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	89.11
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	88.51
KOG2956		516	consensus CLIP-associating protein [General functi	88.19
KOG4653		982	consensus Uncharacterized conserved protein [Funct	88.02
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	87.97
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	87.9
PF04510		174	DUF577: Family of unknown function (DUF577); Inter	87.22
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	87.06
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	86.82
KOG2956		516	consensus CLIP-associating protein [General functi	86.66
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	86.09
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	85.49
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	85.21
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	84.61
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	84.06
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	83.54
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	83.44
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	82.93
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	82.88
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	81.86
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	81.15
PF08161		198	NUC173: NUC173 domain; InterPro: IPR012978 This is	80.52
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	80.08

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=8.3e-132  Score=1068.93  Aligned_cols=803  Identities=47%  Similarity=0.802  Sum_probs=768.9

Q ss_pred             CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCC-CcCC
Q 003608            1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQ   79 (808)
Q Consensus         1 Md~~~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~-~~~~   79 (808)
                      ||.+.+.+++.+|+++|++.|+.||++|+|++++|||...|++|+.+.+.+.+|||+|+|+|||+|.++|+.++. ..+.
T Consensus         1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~   80 (1010)
T KOG1991|consen    1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF   80 (1010)
T ss_pred             CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998742 1356


Q ss_pred             CCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh---hHHHHHHHHHHHHHHccc
Q 003608           80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF  156 (808)
Q Consensus        80 ~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~  156 (808)
                      .+++++|..||++++..+...+..+|.++..|+..|.+.|||++||++++.+...++++   .+++||.||++++|.|+|
T Consensus        81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~  160 (1010)
T KOG1991|consen   81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW  160 (1010)
T ss_pred             CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence            79999999999999999999999999999999999999999999999999999999998   589999999999999999


Q ss_pred             CCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 003608          157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP  236 (808)
Q Consensus       157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~  236 (808)
                      |+.+.|.++..++..+||.+++++..++..+  +..+.+++++++|+|++++++++|..+.+.+.|..||++|+++++++
T Consensus       161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~--s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rp  238 (1010)
T KOG1991|consen  161 KKDEERQPLGEAVEELFPDILQIFNGLLSQE--SYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRP  238 (1010)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999998765  35678999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 003608          237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD  316 (808)
Q Consensus       237 ~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (808)
                      +|.++++.|+++|..++|||||||++++++|+++|||+|++..+++++|++.|..++++.+++.++++++..+++.|+++
T Consensus       239 vP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~  318 (1010)
T KOG1991|consen  239 VPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSD  318 (1010)
T ss_pred             CChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence            99888889999999999999999999999999999999998889999999999999999999999999988666889999


Q ss_pred             HHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHH
Q 003608          317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSE  396 (808)
Q Consensus       317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~~  396 (808)
                      +++.+++.|+..+++++.+|+.++||+..++..+|||.|+++++|+|.|++||.||+|+..|.++|.+||+.+|.+++..
T Consensus       319 rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~  398 (1010)
T KOG1991|consen  319 RVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTT  398 (1010)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcch
Q 003608          397 LVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL  476 (808)
Q Consensus       397 l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~l  476 (808)
                      ++.++|+++++.+++|+.+.+.++..++.++.+.+.+|||++++|++++.+.++.+|+.+++.|+.++|.|+|+++..++
T Consensus       399 ~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~L  478 (1010)
T KOG1991|consen  399 LVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYL  478 (1010)
T ss_pred             HHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHH
Confidence            99999999999999999999999888766668999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHhHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhh
Q 003608          477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNE  554 (808)
Q Consensus       477 r~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~ll~~l~~ll~~  554 (808)
                      |+||||++++|++..|+++..+.++++...++|. |++.|||+.|+.||+.|+.+++ .++.++|++|++|+.+++++++
T Consensus       479 rarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne  558 (1010)
T KOG1991|consen  479 RARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE  558 (1010)
T ss_pred             HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998 8899999999999999999876 4577999999999999999999


Q ss_pred             hchhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003608          555 VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ  634 (808)
Q Consensus       555 ~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~  634 (808)
                      +++|.+..+|+.+|..|+++++|||.+++++|..+|++++++++++.+.++++.+.+.|+++++++++.++++.|+++.+
T Consensus       559 ~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~  638 (1010)
T KOG1991|consen  559 VENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ  638 (1010)
T ss_pred             cchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999999998755444456789999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCccccc
Q 003608          635 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFL  714 (808)
Q Consensus       635 ~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l  714 (808)
                      +++.++|++.++++++..+|+++++++...+...++.++|.||+++|.+++++.+++.+|+.++++.|+||+.+|...++
T Consensus       639 le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~  718 (1010)
T KOG1991|consen  639 LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLL  718 (1010)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhh-chhhHHHHHHHHHHH
Q 003608          715 TCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVVS  793 (808)
Q Consensus       715 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~-~~~~~~~~~~~~~i~  793 (808)
                        +++.|++.+++++++++.++..+++|+..|++|++.++++|+|.++.++|.++..++.|+.. .+++.+++.+++|++
T Consensus       719 --s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvi  796 (1010)
T KOG1991|consen  719 --SNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVI  796 (1010)
T ss_pred             --ccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence              78899999999999999988888999899999999999999999999999999999999998 689999999999999


Q ss_pred             HhHhhChHHHHHhh
Q 003608          794 FHERANSDLSIIVI  807 (808)
Q Consensus       794 ~~~~~n~~~~~~~~  807 (808)
                      +|+||||.+|+++|
T Consensus       797 nalyynP~ltL~iL  810 (1010)
T KOG1991|consen  797 NALYYNPKLTLGIL  810 (1010)
T ss_pred             HHHHcCcHHHHHHH
Confidence            99999999999986

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		808
1z3h_A		968	The Exportin Cse1 In Its Cargo-free, Cytoplasmic St		2e-15
1wa5_C		960	Crystal Structure Of The Exportin Cse1p Complexed W		3e-15

>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State Length = 968

Back alignment and structure

Iteration: 1

Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 100/437 (22%), Positives = 187/437 (42%), Gaps = 38/437 (8%) Query: 22 KAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 K +E +L Q + + LL +I N LS R ++ FKNFI + W N Sbjct: 21 KTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80 Query: 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVY 141 + V+ +++ I+ + +P L+VQ+GE + +I +D+P++WP LL + L + + Sbjct: 81 NNVE--LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMV 138 Query: 142 ---GALFVLRILSRKYE--FKSDE---ERTPVYRIVEETFHHLLNIFNRLVQI---VNPS 190 G L V + +++ F+SDE E V + F +LL + + S Sbjct: 139 TNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKAS 198 Query: 191 LEVA-DLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQR 249 L + D++ ++ K+++ +IP + + N+ M +F L P +P + E Sbjct: 199 LNILFDVLLVLIKLYYDFNCQDIP-EFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHA 256 Query: 250 KSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR 309 KVK ++ TR+ D+ F M + ++ NLL I Sbjct: 257 SV--LIKVKSSIQELVQLYTTRYEDV---------FGPMI-----NEFIQITWNLLTSIS 300 Query: 310 VGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDE 367 D + + L +L+ + + + ++ + +I+ P + + D +L+++ Sbjct: 301 NQPKY-DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFED 359 Query: 368 DPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEY 427 DP EY+R+ + D + R A DF+ EL K F+ + G +Y P Sbjct: 360 DPIEYIRRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP--S 416 Query: 428 KPYRQKDGALLAIGALC 444 K ++ KD + AL Sbjct: 417 KNWKFKDLYIYLFTALA 433

PyMOL of 1z3h

>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 960

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		808
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	1e-123
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	5e-45
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	2e-42
1qgr_A		876	Protein (importin beta subunit); transport recepto	7e-30
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	2e-29
2x19_B		963	Importin-13; nuclear transport, protein transport;	4e-28
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	2e-25
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	1e-18
2x1g_F		971	Cadmus; transport protein, developmental protein,	5e-18
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	3e-16
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	2e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	4e-05

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960	Back alignment and structure

 Score =  392 bits (1007), Expect = e-123
 Identities = 149/848 (17%), Positives = 310/848 (36%), Gaps = 90/848 (10%)

Query: 2   DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIH 61
           DL ++A  L    S      K +E +L Q +      + LL +I   N  LS R   ++ 
Sbjct: 3   DLETVAKFLAE--SVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALF 60

Query: 62  FKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP 121
           FKNFI + W     N    +   + ++++  I+  +  +P  L+VQ+GE + +I  +D+P
Sbjct: 61  FKNFIKRKWVDENGN--HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118

Query: 122 EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKY--EFKSDEERTPVYRIVEETFHHL 176
           ++WP LL  +   L +       G L V   + +++   F+SDE    +  +++      
Sbjct: 119 DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPF 178

Query: 177 LNIFNRLVQIVNPS-------LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229
           LN+   + + +  +         + D++ ++ K+++     +IP+   D       M +F
Sbjct: 179 LNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED--NIQVGMGIF 236

Query: 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMF 289
              L    P   +P + E   +    KVK     ++    TR+ D               
Sbjct: 237 HKYLSYSNPLLEDPDETE--HASVLIKVKSSIQELVQLYTTRYED--------------V 280

Query: 290 QKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNL--LQPRLDVLL 347
                 + ++   NLL  I       D + +  L +L+        + +   +  ++ + 
Sbjct: 281 FGPMINEFIQITWNLLTSIS-NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT 339

Query: 348 FEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQ 407
            +I+ P +   + D +L+++DP EY+R+  +   D  + R A  DF+ EL  K       
Sbjct: 340 EQIILPNVTLREEDVELFEDDPIEYIRRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTN 398

Query: 408 KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC------DKLKQTEPYKSELERML 461
            F+  + G   +Y   P +   ++ KD  +    AL       +    +      +    
Sbjct: 399 IFLAHMKGFVDQYMSDPSK--NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456

Query: 462 VQHVFPEFSS---PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRV 518
            + + P+ +S   P   LR  A      +   N   +    + +  + + L+  E  V  
Sbjct: 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFR--NQLTKAQLIELMPILATFLQTDEYVVYT 514

Query: 519 DSVFALRSFVE---------ACRDLNEIRPILPQLLDEFFKLMNEV--------ENEDLV 561
            +   +   +                +I      LL     L+ +         ENE L+
Sbjct: 515 YAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM 574

Query: 562 FTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 621
            ++  ++    + + P    L                  ++  +P          +I  I
Sbjct: 575 RSIFRVLQTSEDSIQPLFPQLLAQFIEIVT------IMAKNPSNP--RFTHYTFESIGAI 626

Query: 622 LESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWP 681
           L            +  +++P    + + D QE    V +I++++   S TI   +  L  
Sbjct: 627 LNYTQ--RQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQ 684

Query: 682 LMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG 741
            ++           P +   L ++I   ++ F           +  +   ++A K  E  
Sbjct: 685 PLLAPNVWELKGNIPAVTRLLKSFIKTDSSIF------PDLVPVLGIFQRLIASKAYEVH 738

Query: 742 DIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRRAEK-SYLKCLLVQVVSFHERAN 799
                  L+E +        +  +++    + ++RL+ ++   Y+K L V       +  
Sbjct: 739 ----GFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLG 794

Query: 800 SDLSIIVI 807
           SD  I  I
Sbjct: 795 SDFLIHFI 802

PyMOL of 1wa5

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		808
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	1e-118
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-37
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	6e-36
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	1e-35
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-32
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-04
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  377 bits (969), Expect = e-118
 Identities = 147/846 (17%), Positives = 305/846 (36%), Gaps = 86/846 (10%)

Query: 2   DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIH 61
           DL ++A  L    S      K +E +L Q +      + LL +I   N  LS R   ++ 
Sbjct: 3   DLETVAKFLAE--SVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALF 60

Query: 62  FKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP 121
           FKNFI + W     N    +   + ++++  I+  +  +P  L+VQ+GE + +I  +D+P
Sbjct: 61  FKNFIKRKWVDENGN--HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118

Query: 122 EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKY--EFKSDEERTPVYRIVEETFHHL 176
           ++WP LL  +   L +       G L V   + +++   F+SDE    +  +++      
Sbjct: 119 DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPF 178

Query: 177 LNIFNRLVQIVNPSL-------EVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229
           LN+   + + +  +         + D++ ++ K+++     +IP+   D       M +F
Sbjct: 179 LNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED--NIQVGMGIF 236

Query: 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMF 289
              L    P   +P + E   +    KVK     ++    TR+ D               
Sbjct: 237 HKYLSYSNPLLEDPDETEH--ASVLIKVKSSIQELVQLYTTRYED--------------V 280

Query: 290 QKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLL 347
                 + ++   NLL  I       D + +  L +L+        + +      ++ + 
Sbjct: 281 FGPMINEFIQITWNLLTSIS-NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT 339

Query: 348 FEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQ 407
            +I+ P +   + D +L+++DP EY+R+      D  + R A  DF+ EL  K       
Sbjct: 340 EQIILPNVTLREEDVELFEDDPIEYIRR-DLEGSDTDTRRRACTDFLKELKEKNEVLVTN 398

Query: 408 KFIQFIVGIFKRYDETPVEYKPYR----QKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463
            F+  + G   +Y   P +   ++        AL   G + +    +      +     +
Sbjct: 399 IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK 458

Query: 464 HVFPEFSS---PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDS 520
            + P+ +S   P   LR  A      + +          + +  + + L+  E  V   +
Sbjct: 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA--QLIELMPILATFLQTDEYVVYTYA 516

Query: 521 VFALRSFVEACRD---------LNEIRPILPQLLDEFFKLMNEV--------ENEDLVFT 563
              +   +                +I      LL     L+ +         ENE L+ +
Sbjct: 517 AITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS 576

Query: 564 LETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILE 623
           +  ++    + + P    L                  ++  +P          +I  IL 
Sbjct: 577 IFRVLQTSEDSIQPLFPQLLAQFIEIVT------IMAKNPSNP--RFTHYTFESIGAILN 628

Query: 624 SVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLM 683
                      +  +++P    + + D QE    V +I++++   S TI   +  L   +
Sbjct: 629 YTQ--RQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPL 686

Query: 684 MEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDI 743
           +           P +   L ++I   ++ F           +  +   ++A K  E    
Sbjct: 687 LAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKAYEVH-- 738

Query: 744 EPAPKLIEVVFQNCKGQV-DHWVEPYLRITVERLRRAEK-SYLKCLLVQVVSFHERANSD 801
                L+E +           +++    + ++RL+ ++   Y+K L V       +  SD
Sbjct: 739 --GFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796

Query: 802 LSIIVI 807
             I  I
Sbjct: 797 FLIHFI 802

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		808
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	100.0
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	100.0
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	100.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.92
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.89
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.83
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.8
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.77
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.73
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.32
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.25
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.19
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.04
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.6
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.43
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.41
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.26
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.22
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.39
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.38
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.99
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.43
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.01
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	94.59
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	94.11
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	86.79
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	85.31
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	80.36

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=615.04  Aligned_cols=759  Identities=18%  Similarity=0.274  Sum_probs=619.1

Q ss_pred             CC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             99-38899999972399977899999999972059872999999997237684567999999988774206999988689
Q 003608            1 MD-LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ   79 (808)
Q Consensus         1 Md-~~~l~~~L~~~ls~d~~~r~~AE~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~Aai~lKn~i~~~W~~~~~~~~~   79 (808)
                      |+ .+++.++|+++++|+  .||+||++|++++++|||..+|++|+.+++.+.++|++|+|+|||.|+++|+...  .++
T Consensus         1 ~~d~~~l~~ll~~s~~~~--~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~--~~~   76 (959)
T d1wa5c_           1 MSDLETVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN--GNH   76 (959)
T ss_dssp             CCHHHHHHHHHHHTTSGG--GHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS--SCB
T ss_pred             CCCHHHHHHHHHHCCCHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCC
T ss_conf             971999999998789968--9999999999977099899999999835899999999999999999998556434--457


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHCCC
Q ss_conf             99956799999999999712895889999999999996309999724799999871033---199999999999997146
Q 003608           80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF  156 (808)
Q Consensus        80 ~i~~~~k~~ir~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~  156 (808)
                      .+|+++|..||+.+++++.++++.||++++.+++.|++.|||++||++++.+.+.++++   ..+++|.+++.++|++++
T Consensus        77 ~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~  156 (959)
T d1wa5c_          77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP  156 (959)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999837969999999999999998768402579999999985799999999999999999999876


Q ss_pred             CC--CCCCCHHHHHHHHHHHHHHHHHHHHHCC---CC-CC---HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             78--6785148999999869999999997404---59-98---1499999999999677654048712279221789999
Q 003608          157 KS--DEERTPVYRIVEETFHHLLNIFNRLVQI---VN-PS---LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMI  227 (808)
Q Consensus       157 ~~--~~~~~~~~~~~~~~~p~l~~~~~~~~~~---~~-~~---~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~  227 (808)
                      ..  ++.+..+..+...+++.+.+++....+.   .. +.   .........++|+++++...+.+..+.  +.+..|+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  234 (959)
T d1wa5c_         157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE--DNIQVGMG  234 (959)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH--HTHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHH
T ss_conf             5132547767999999999999999999999976352419999999999999999999977520469999--99999999


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998158999899999946642025167899999999999999489999984339999999997389999999999994
Q 003608          228 LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR  307 (808)
Q Consensus       228 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~  307 (808)
                      .+..+++...+...  .+.+......++++|+++++++..+..+|++              +..++.+.++..+++.+..
T Consensus       235 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~  298 (959)
T d1wa5c_         235 IFHKYLSYSNPLLE--DPDETEHASVLIKVKSSIQELVQLYTTRYED--------------VFGPMINEFIQITWNLLTS  298 (959)
T ss_dssp             HHHHHHSCCSCCCC--------CCCHHHHHHHHHHHHHHHHHHHCHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_conf             99999800553135--8014555028999999999999999998589--------------8999999999999999998


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCH--HHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCC
Q ss_conf             518963588999999999983227701156403--339999999773056679325754311988999782363233479
Q 003608          308 IRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYS  385 (808)
Q Consensus       308 ~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~--~~l~~li~~li~~~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s  385 (808)
                      ... .+..+.++..+++|+..+++.+..+..+.  +++..++..+++|+++++++|.+.|++||++|++++.+. .+.++
T Consensus       299 ~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~-~~~~~  376 (959)
T d1wa5c_         299 ISN-QPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDT  376 (959)
T ss_dssp             CCS-CTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----C
T ss_pred             HHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH-CCCCC
T ss_conf             833-5552899999999999998517899887204678889999999885678778987750638777877400-00021


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHH
Q ss_conf             7889999999999730601199999999997312579987886335587999999997787430------7954688999
Q 003608          386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ------TEPYKSELER  459 (808)
Q Consensus       386 ~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~l~~~~~~l~~------~~~~~~~~~~  459 (808)
                      +|.+|..++..+++++++.+.+.+++++.+.+++....+.  .+|+.+|+++.++|+++....-      ......++.+
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  454 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPS--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD  454 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             7789999999999753411268899999999975146876--21677889999999998631266665521230434999


Q ss_pred             HHHHCCCCCCCC---CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC----
Q ss_conf             984504555668---8865004799999741116447954799999999822899998428869999999997033----
Q 003608          460 MLVQHVFPEFSS---PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR----  532 (808)
Q Consensus       460 ~l~~~i~~~l~~---~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~----  532 (808)
                      ++.+++.|.+..   +++.+|+|++|++|+|+++.  .++.+..+++.++++|++++.+||.+||.|+..+++...    
T Consensus       455 ~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~  532 (959)
T d1wa5c_         455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS  532 (959)
T ss_dssp             HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999973688750999999999998777412--6788999999999872799615899999999999986600332


Q ss_pred             -----CCCCCCCCHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             -----4311002139999999998511101--------138999999999604563000998999999999999821368
Q 003608          533 -----DLNEIRPILPQLLDEFFKLMNEVEN--------EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEA  599 (808)
Q Consensus       533 -----~~~~~~p~l~~ll~~l~~ll~~~~~--------~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~  599 (808)
                           ..+.+.|+++++++.++..+.+...        +.++.+++.++..+++.+.|++..+++.+...+.+..+    
T Consensus       533 ~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~----  608 (959)
T d1wa5c_         533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK----  608 (959)
T ss_dssp             CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT----
T ss_pred             CHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_conf             0010328877756999999999999861220256788999999999999987988888999999999999999856----


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             99999835789999999999999952387478997776489999997012714589999999999550499999655664
Q 003608          600 DEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSL  679 (808)
Q Consensus       600 ~~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~~~~l  679 (808)
                      ++    .+......++++++.++...+  ++.+..+++.++|++..+++++..++.++++++|..++++++.+++.+|++
T Consensus       609 ~~----~~~~~~~~~~e~l~~l~~~~~--~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  682 (959)
T d1wa5c_         609 NP----SNPRFTHYTFESIGAILNYTQ--RQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPL  682 (959)
T ss_dssp             SC----CCHHHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGG
T ss_pred             CC----CCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             84----236789999999999998428--135999999999999999843316478999999999987477866889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99999996446975561244321114312721223668940799999999997617899987557354899999998375
Q 003608          680 WPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG  759 (808)
Q Consensus       680 ~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~  759 (808)
                      ++.+++.......++++.+..++++|+..+++.+.+      .+.+++++..++.++..+    ..++.+++.+++.+|+
T Consensus       683 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~l~~~~~~l~~~~~~----~~~~~ll~~ii~~~~~  752 (959)
T d1wa5c_         683 AQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKAYE----VHGFDLLEHIMLLIDM  752 (959)
T ss_dssp             HHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSC------SHHHHHHHHHHHTCTTTH----HHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC------HHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHCCH
T ss_conf             999863788877611899999999999728786446------287999999987798306----8999999999997851


Q ss_pred             C-CCCCHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf             8-62221779999999985001-128999999999870721807789851
Q 003608          760 Q-VDHWVEPYLRITVERLRRAE-KSYLKCLLVQVVSFHERANSDLSIIVI  807 (808)
Q Consensus       760 ~-~~~~l~~il~~~l~~l~~~~-~~~~~~~~~~vi~~~~~~~~~~~~~~~  807 (808)
                      + ..++++.++..+++++...+ .+..+..++.+...|+.++|..+++++
T Consensus       753 ~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  802 (959)
T d1wa5c_         753 NRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFI  802 (959)
T ss_dssp             HHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             44676899999999999870460899999999999999871999999999

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure