Citrus Sinensis ID: 003629

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800------

MLPPNITSINTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQHNAADINEATV

cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEEEcccccccHHHHHHHHcccccccHHHHcccccHHHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccccccccccHHHHHHHHHccccccEEEEEcccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHcccccEEEEccccccccHHHHHcccccccccccHHHHHHHcccccccccEEEEEEEcccccccccc

ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHEHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccEEEEEEEccccccHHHHHHHHHHcccccccEEEEEEEEEEcccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHHHccEEEEEEEccccccccccEEEccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccHHHHHHHcHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHccccEEEEEcccccccHHHHccHcHHHccccccccHHcccccccccEEEEEEEEccccccccccc

mlppnitsintssdgawqgdnplnfaFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGillgpsalgrnkeylhlmfpswstpilESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAvdgeskvgyGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLagkasgteshhpssLISIWVLISGVAFVAFMLIVVRPIMDWVArqcssdndlvdDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVfgltipkggDFVVRLMKKIQDFVSGLLLPLyfassglktdvAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYkplrrltpqnqqglerqspssknskdefkiqacvhgpenvpaLINLTELIRTTEGSTLKLYVMRLVEltdrsssiLTVQKtrknglplvnrFRRAGMSHDQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLpfhkqrrgegeeeidsVSHGWREVNRTVLLNAPCSVAVLVdrgfgcgahltvaepaatvpkRVCIVFLggpddrraldlggrmaensgVKVTLVRFVHqasgaatggiaeratsdistengisldeAAVDDFMrkcdgsveceekVMGTVKDEVLKIGQSRDYELVVagkgrfpstalaeladhqpenvglgpignilassdhgILASVLVIQQHnaadineatv

MLPPNITSINTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRltpqnqqglerqspssknskDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVEltdrsssiltvqktrknglplvNRFRRAGMSHDQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLpfhkqrrgegeeeidsvshGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLtvaepaatvpkrVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQAsgaatggiaeratsdistengisLDEAAVDDFMRKCDGSveceekvmgtvkdevlkigqsrDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQHnaadineatv

MLPPNITSINTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGllfflflvgleldlSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTamaaaafndiaaWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQHNAADINEATV

****************WQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKA********SSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLR************************KIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHK*********IDSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIA***********GISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQH**********

**************GAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLR***********************FKIQACVHGPENVPALINLTELIRT*EGSTLKLYVMRLVELTDRSSS*************************DQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQ*************HGWREVNRTVLLNAPCSVAVLVDRGFGC***********TVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQA******************ENGISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKG***************ENVGLGPIGNILASSDHGILASVLVI*************

MLPPNITSINTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLA***********SSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRLTPQ******************FKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQ***********VSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQHNAADINEATV

****NITSINTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKT***************MSHDQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLT*****ATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQA***************ISTENGISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQHNA********

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		806	2.2.26 [Sep-21-2011]
Q9M353		842	Cation/H(+) antiporter 20	yes	no	0.992	0.950	0.6	0.0
Q9LUN4		800	Cation/H(+) antiporter 19	no	no	0.936	0.943	0.491	0.0
Q9FFR9		810	Cation/H(+) antiporter 18	no	no	0.957	0.953	0.475	0.0
Q9SUQ7		820	Cation/H(+) antiporter 17	no	no	0.950	0.934	0.456	0.0
Q9SIT5		821	Cation/H(+) antiporter 15	no	no	0.941	0.924	0.443	1e-179
Q1HDT3		811	Cation/H(+) antiporter 16	no	no	0.955	0.949	0.445	1e-175
Q8VYD4		867	Cation/H(+) antiporter 23	no	no	0.926	0.861	0.340	1e-113
Q9SKA9		832	Cation/H(+) antiporter 21	no	no	0.957	0.927	0.324	1e-109
Q9LMJ1		829	Cation/H(+) antiporter 14	no	no	0.915	0.890	0.293	9e-87
Q9P7I1		889	K(+)/H(+) antiporter 1 OS	yes	no	0.586	0.532	0.369	4e-83

>sp\|Q9M353\|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1	Back alignment and function desciption

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/830 (60%), Positives = 627/830 (75%), Gaps = 30/830 (3%)

Query: 2   LPPNITSINTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEIL 61
           +P NITS+ TSS+G WQGDNPLNFAFPLLI+QTAL++  S  LA L KPLRQPKVIAEI+
Sbjct: 1   MPFNITSVKTSSNGVWQGDNPLNFAFPLLIVQTALIIAVSRFLAVLFKPLRQPKVIAEIV 60

Query: 62  GGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSA 121
           GGILLGPSALGRN  Y+  +FP WS PILESVASIGLLFFLFLVGLELDLSSIR++GK A
Sbjct: 61  GGILLGPSALGRNMAYMDRIFPKWSMPILESVASIGLLFFLFLVGLELDLSSIRRSGKRA 120

Query: 122 FKIALAGITLPFLLGAGVSLFLQKAV-DGESKVGYGQFIIFIGVSLSITAFPVLARILAD 180
           F IA+AGITLPF+ G GV+  ++  +     K GY +F++F+GV+LSITAFPVLARILA+
Sbjct: 121 FGIAVAGITLPFIAGVGVAFVIRNTLYTAADKPGYAEFLVFMGVALSITAFPVLARILAE 180

Query: 181 LKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAF 240
           LKLLTTQ+G+TAMAAAAFND+AAWILLALAV+LAG          S L+S+WVL+SG  F
Sbjct: 181 LKLLTTQIGETAMAAAAFNDVAAWILLALAVALAGNGGEGGGEKKSPLVSLWVLLSGAGF 240

Query: 241 VAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFG 300
           V FML+V+RP M WVA++ S +ND+V ++Y+CLTL GVMVSGF TDLIGIH+IFGAFVFG
Sbjct: 241 VVFMLVVIRPGMKWVAKRGSPENDVVRESYVCLTLAGVMVSGFATDLIGIHSIFGAFVFG 300

Query: 301 LTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACA 360
           LTIPK G+F  RL+++I+DFVSGLLLPLYFA+SGLKTDVAKIRG E+WG+L LV+ TACA
Sbjct: 301 LTIPKDGEFGQRLIERIEDFVSGLLLPLYFATSGLKTDVAKIRGAESWGMLGLVVVTACA 360

Query: 361 GKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMAL 420
           GKI+GTFV+A++  +P RE+L LG LMNTKGLVELIVLNIG+EKKVLNDE FAILV+MAL
Sbjct: 361 GKIVGTFVVAVMVKVPAREALTLGFLMNTKGLVELIVLNIGKEKKVLNDETFAILVLMAL 420

Query: 421 FTTFMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINL 480
           FTTF+TTP VMAIYKP R       + L+  S S  ++K+E +I AC+HGP NV +LI+L
Sbjct: 421 FTTFITTPTVMAIYKPAR----GTHRKLKDLSASQDSTKEELRILACLHGPANVSSLISL 476

Query: 481 TELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASL 540
            E IRTT+   LKL+VM L+ELT+RSSSI+ VQ+ RKNGLP V+R+R  G  H  ++   
Sbjct: 477 VESIRTTKILRLKLFVMHLMELTERSSSIIMVQRARKNGLPFVHRYRH-GERHSNVIGGF 535

Query: 541 EAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQ-----------RRG 589
           EAY QL RV VR  TA+S L TMHEDI H+A+ KRV MI+LPFHK+           + G
Sbjct: 536 EAYRQLGRVAVRPITAVSPLPTMHEDICHMADTKRVTMIILPFHKRWNADHGHSHHHQDG 595

Query: 590 EGEEEI-DSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVF 648
            G+  + ++V HGWR VN+ VL NAPCSVAVLVDRG G     T++   + V +RVC++F
Sbjct: 596 GGDGNVPENVGHGWRLVNQRVLKNAPCSVAVLVDRGLGSIEAQTLSLDGSNVVERVCVIF 655

Query: 649 LGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERA------------TSD 696
            GGPDDR +++LGGRMAE+  VKVT++RF+ + +  +T      A            T++
Sbjct: 656 FGGPDDRESIELGGRMAEHPAVKVTVIRFLVRETLRSTAVTLRPAPSKGKEKNYAFLTTN 715

Query: 697 ISTENGISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPS 756
           +  E    LDE A++DF  K    VE +EK    + +E+L IGQS+D++L+V G+GR PS
Sbjct: 716 VDPEKEKELDEGALEDFKSKWKEMVEYKEKEPNNIIEEILSIGQSKDFDLIVVGRGRIPS 775

Query: 757 TALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQHNAADINEATV 806
             +A LA+ Q E+  LGPIG++LASS + I+ S+LV+QQHN A + + TV
Sbjct: 776 AEVAALAERQAEHPELGPIGDVLASSINHIIPSILVVQQHNKAHVEDITV 825

Operates as a K(+)/H(+) antiporter that maintains K(+) homeostasis in guard cells and could regulate pH. Plays a critical role in osmoregulation through the control of stomates opening.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LUN4\|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1	Back alignment and function description

>sp\|Q9FFR9\|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1	Back alignment and function description

>sp\|Q9SUQ7\|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1	Back alignment and function description

>sp\|Q9SIT5\|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1	Back alignment and function description

>sp\|Q1HDT3\|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1	Back alignment and function description

>sp\|Q8VYD4\|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKA9\|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2	Back alignment and function description

>sp\|Q9LMJ1\|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1	Back alignment and function description

>sp\|Q9P7I1\|KHA1_SCHPO K(+)/H(+) antiporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kha1 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		806
225440302		839	PREDICTED: cation/H(+) antiporter 20-lik	0.986	0.947	0.667	0.0
297740402		858	unnamed protein product [Vitis vinifera]	0.986	0.926	0.652	0.0
147776948		859	hypothetical protein VITISV_023524 [Viti	0.986	0.925	0.651	0.0
225440298		826	PREDICTED: cation/H(+) antiporter 20 iso	0.962	0.939	0.663	0.0
359481798		832	PREDICTED: cation/H(+) antiporter 20 iso	0.962	0.932	0.660	0.0
224090288		833	cation proton exchanger [Populus trichoc	0.987	0.955	0.640	0.0
297740403		809	unnamed protein product [Vitis vinifera]	0.941	0.938	0.655	0.0
255573649		847	monovalent cation:proton antiporter, put	0.990	0.942	0.631	0.0
255573653		798	monovalent cation:proton antiporter, put	0.947	0.957	0.648	0.0
449448910		853	PREDICTED: cation/H(+) antiporter 20-lik	0.992	0.937	0.628	0.0

>gi\|225440302\|ref\|XP_002269591.1\| PREDICTED: cation/H(+) antiporter 20-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/815 (66%), Positives = 651/815 (79%), Gaps = 20/815 (2%)

Query: 5   NITSINTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGI 64
           NITSI+TSS+G WQGDNPL+FAFPLLI+QT L+L  S  LAFL+KPLRQPKVIAEI+GGI
Sbjct: 4   NITSISTSSNGVWQGDNPLDFAFPLLIVQTTLILALSRFLAFLLKPLRQPKVIAEIIGGI 63

Query: 65  LLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKI 124
           LLGPSALGRN+ YLH +FPSWSTPILESVASIGLLFFLFLVGLELDLSSIR++G+ A  I
Sbjct: 64  LLGPSALGRNQNYLHRIFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGRKALSI 123

Query: 125 ALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLL 184
           A  GITLPF+ G GV+  L+K+VDG  K GYG F++F+GV+LSITAFPVLARILA+LKLL
Sbjct: 124 ATVGITLPFVCGVGVAFVLRKSVDGADKAGYGTFLVFMGVALSITAFPVLARILAELKLL 183

Query: 185 TTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFM 244
           TT+VG+TAMAAAAFND+ AWILLALAV+LAG   G E  H S LIS+WVL+SGVAFV FM
Sbjct: 184 TTRVGETAMAAAAFNDVVAWILLALAVALAGDGEGGE--HKSPLISVWVLLSGVAFVIFM 241

Query: 245 LIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIP 304
           ++V++P M WVAR+ S D+  VD+AYICLTL GVMVSGF+TDLIGIH+IFGAFVFGLTIP
Sbjct: 242 MVVIKPAMSWVARR-SPDSHSVDEAYICLTLAGVMVSGFVTDLIGIHSIFGAFVFGLTIP 300

Query: 305 KGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKIL 364
           KGG F  RL+++I+DFV+GLLLPLYFASSGLKT+VAKIRG+EAWGLLVLVI+TACAGKI+
Sbjct: 301 KGGGFSERLIERIEDFVTGLLLPLYFASSGLKTNVAKIRGLEAWGLLVLVITTACAGKIV 360

Query: 365 GTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTF 424
           GTFV+A++CMIP RESL LGVLMNTKGLVELIVLNIG+EKKVLNDE+FAILV+MALFTTF
Sbjct: 361 GTFVVAMMCMIPARESLTLGVLMNTKGLVELIVLNIGKEKKVLNDEIFAILVLMALFTTF 420

Query: 425 MTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINLTELI 484
           MTTP+VM IYKP+R    +  + L R   S  +SK + +I ACVHGP NVP+LI+L E  
Sbjct: 421 MTTPIVMTIYKPVRGGPARTHRRL-RDFSSVDSSKYDLRILACVHGPGNVPSLISLIEAT 479

Query: 485 RTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYN 544
           R+ + S LKLYVMRLVELT+RSSSI+ VQ+ RKNG P +NRFRR G S D++  + EAY 
Sbjct: 480 RSAKKSQLKLYVMRLVELTERSSSIIMVQRARKNGFPFINRFRR-GQSDDRVEVAFEAYG 538

Query: 545 QLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWRE 604
           QL RV+VR +TAIS+LSTMHEDI HVAEEKR  M++LPFHKQ +GEG E ++++ +GWR 
Sbjct: 539 QLGRVSVRPTTAISSLSTMHEDICHVAEEKRATMVILPFHKQWKGEGYESMENMGNGWRG 598

Query: 605 VNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRM 664
           VN+ VL N+PCSVAVLVDRGFG G   T   P +TV +R+CI+F GGPDDR AL+LG RM
Sbjct: 599 VNQRVLKNSPCSVAVLVDRGFGSGPQQTRG-PTSTVTQRICILFFGGPDDREALELGARM 657

Query: 665 AENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGIS-------------LDEAAVD 711
           AE+  VKVT++RFV +  G+ +  I  R + +   E   S             LDE A  
Sbjct: 658 AEHPAVKVTVIRFVEK-DGSDSKDIILRPSPEKCDEQSYSFSTAAMDRQKEKELDEIATA 716

Query: 712 DFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVG 771
           +F  +  G VE  EKV   V + VL IG+S DY+LVV GKGRFPST +AELA+ Q E+  
Sbjct: 717 EFKSRWGGLVEYVEKVASNVVEGVLAIGKSGDYDLVVVGKGRFPSTMVAELAERQAEHAE 776

Query: 772 LGPIGNILASSDHGILASVLVIQQHNAADINEATV 806
           LGPIG+ILASS  GI++SVLVIQQH+ A   E  V
Sbjct: 777 LGPIGDILASSGQGIVSSVLVIQQHDIAHAEEVPV 811

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297740402\|emb\|CBI30584.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147776948\|emb\|CAN63422.1\| hypothetical protein VITISV_023524 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225440298\|ref\|XP_002262680.1\| PREDICTED: cation/H(+) antiporter 20 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359481798\|ref\|XP_003632674.1\| PREDICTED: cation/H(+) antiporter 20 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224090288\|ref\|XP_002308966.1\| cation proton exchanger [Populus trichocarpa] gi\|222854942\|gb\|EEE92489.1\| cation proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297740403\|emb\|CBI30585.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255573649\|ref\|XP_002527747.1\| monovalent cation:proton antiporter, putative [Ricinus communis] gi\|223532888\|gb\|EEF34660.1\| monovalent cation:proton antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255573653\|ref\|XP_002527749.1\| monovalent cation:proton antiporter, putative [Ricinus communis] gi\|223532890\|gb\|EEF34662.1\| monovalent cation:proton antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449448910\|ref\|XP_004142208.1\| PREDICTED: cation/H(+) antiporter 20-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		806
TAIR\|locus:2084370		842	CHX20 "cation/H+ exchanger 20"	0.833	0.798	0.607	4e-216
TAIR\|locus:2160457		810	CHX18 "cation/H+ exchanger 18"	0.955	0.950	0.461	9.6e-176
TAIR\|locus:2090462		800	CHX19 "cation/H+ exchanger 19"	0.885	0.892	0.482	8.2e-170
TAIR\|locus:2128484		820	CHX17 "cation/H+ exchanger 17"	0.954	0.937	0.433	3.8e-165
TAIR\|locus:2054152		821	CHX15 "cation/hydrogen exchang	0.939	0.922	0.427	9.3e-162
TAIR\|locus:2024578		811	CHX16 "cation/H+ exchanger 16"	0.951	0.945	0.424	2.1e-155
TAIR\|locus:2031968		867	CHX23 "cation/H+ exchanger 23"	0.930	0.865	0.329	6.4e-99
ASPGD\|ASPL0000061348		883	AN1290 [Emericella nidulans (t	0.521	0.475	0.374	1.7e-84
DICTYBASE\|DDB_G0290253		1008	nhe4 "cation/hydrogen exchange	0.581	0.465	0.362	9.4e-75
POMBASE\|SPAC105.01c		889	kha1 "potassium ion/proton ant	0.586	0.532	0.347	2.9e-72

TAIR\|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2088 (740.1 bits), Expect = 4.0e-216, P = 4.0e-216
 Identities = 419/690 (60%), Positives = 519/690 (75%)

Query:     2 LPPNITSINTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEIL 61
             +P NITS+ TSS+G WQGDNPLNFAFPLLI+QTAL++  S  LA L KPLRQPKVIAEI+
Sbjct:     1 MPFNITSVKTSSNGVWQGDNPLNFAFPLLIVQTALIIAVSRFLAVLFKPLRQPKVIAEIV 60

Query:    62 GGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGXXXXXXXXXXXXXXSSIRQNGKSA 121
             GGILLGPSALGRN  Y+  +FP WS PILESVASIG              SSIR++GK A
Sbjct:    61 GGILLGPSALGRNMAYMDRIFPKWSMPILESVASIGLLFFLFLVGLELDLSSIRRSGKRA 120

Query:   122 FKIALAGITLPFLLGAGVSLFLQKAV-DGESKVGYGQFIIFIGVSLSITAFPVLARILAD 180
             F IA+AGITLPF+ G GV+  ++  +     K GY +F++F+GV+LSITAFPVLARILA+
Sbjct:   121 FGIAVAGITLPFIAGVGVAFVIRNTLYTAADKPGYAEFLVFMGVALSITAFPVLARILAE 180

Query:   181 LKLLTTQVGQTXXXXXXXXXXXXWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAF 240
             LKLLTTQ+G+T            WILLALAV+LAG          S L+S+WVL+SG  F
Sbjct:   181 LKLLTTQIGETAMAAAAFNDVAAWILLALAVALAGNGGEGGGEKKSPLVSLWVLLSGAGF 240

Query:   241 VAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFG 300
             V FML+V+RP M WVA++ S +ND+V ++Y+CLTL GVMVSGF TDLIGIH+IFGAFVFG
Sbjct:   241 VVFMLVVIRPGMKWVAKRGSPENDVVRESYVCLTLAGVMVSGFATDLIGIHSIFGAFVFG 300

Query:   301 LTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACA 360
             LTIPK G+F  RL+++I+DFVSGLLLPLYFA+SGLKTDVAKIRG E+WG+L LV+ TACA
Sbjct:   301 LTIPKDGEFGQRLIERIEDFVSGLLLPLYFATSGLKTDVAKIRGAESWGMLGLVVVTACA 360

Query:   361 GKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMAL 420
             GKI+GTFV+A++  +P RE+L LG LMNTKGLVELIVLNIG+EKKVLNDE FAILV+MAL
Sbjct:   361 GKIVGTFVVAVMVKVPAREALTLGFLMNTKGLVELIVLNIGKEKKVLNDETFAILVLMAL 420

Query:   421 FTTFMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINL 480
             FTTF+TTP VMAIYKP R       + L+  S S  ++K+E +I AC+HGP NV +LI+L
Sbjct:   421 FTTFITTPTVMAIYKPARG----THRKLKDLSASQDSTKEELRILACLHGPANVSSLISL 476

Query:   481 TELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASL 540
              E IRTT+   LKL+VM L+ELT+RSSSI+ VQ+ RKNGLP V+R+R  G  H  ++   
Sbjct:   477 VESIRTTKILRLKLFVMHLMELTERSSSIIMVQRARKNGLPFVHRYRH-GERHSNVIGGF 535

Query:   541 EAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQ-----------RRG 589
             EAY QL RV VR  TA+S L TMHEDI H+A+ KRV MI+LPFHK+           + G
Sbjct:   536 EAYRQLGRVAVRPITAVSPLPTMHEDICHMADTKRVTMIILPFHKRWNADHGHSHHHQDG 595

Query:   590 EGEEEI-DSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVF 648
              G+  + ++V HGWR VN+ VL NAPCSVAVLVDRG G     T++   + V +RVC++F
Sbjct:   596 GGDGNVPENVGHGWRLVNQRVLKNAPCSVAVLVDRGLGSIEAQTLSLDGSNVVERVCVIF 655

Query:   649 LGGPDDRRALDLGGRMAENSGVKVTLVRFV 678
              GGPDDR +++LGGRMAE+  VKVT++RF+
Sbjct:   656 FGGPDDRESIELGGRMAEHPAVKVTVIRFL 685

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0012505 "endomembrane system" evidence=IDA

GO:0030104 "water homeostasis" evidence=IMP

GO:0030007 "cellular potassium ion homeostasis" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006885 "regulation of pH" evidence=IMP

TAIR\|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000061348 AN1290 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290253 nhe4 "cation/hydrogen exchanger 4" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPAC105.01c kha1 "potassium ion/proton antiporter Kha1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M353	CHX20_ARATH	No assigned EC number	0.6	0.9925	0.9501	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		806
PLN03159		832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	0.0
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	3e-66
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	2e-64
TIGR00932		273	TIGR00932, 2a37, transporter, monovalent cation:pr	3e-41
PRK03659		601	PRK03659, PRK03659, glutathione-regulated potassiu	2e-13
PRK03562		621	PRK03562, PRK03562, glutathione-regulated potassiu	5e-13
COG4651		408	COG4651, RosB, Kef-type K+ transport system, predi	9e-11
COG0025		429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	2e-10
PRK10669		558	PRK10669, PRK10669, putative cation:proton antipor	4e-07
pfam00582		139	pfam00582, Usp, Universal stress protein family	8e-04

>gnl\|CDD\|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	Back alignment and domain information

 Score =  723 bits (1867), Expect = 0.0
 Identities = 367/797 (46%), Positives = 525/797 (65%), Gaps = 39/797 (4%)

Query: 12  SSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSAL 71
           +++G WQGDNPL+F+ PL I+Q  LV++T+  L F++KP RQP+VI+EILGG++LGPS L
Sbjct: 26  TTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVL 85

Query: 72  GRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITL 131
           G+++ + + +FP  S  +LE++A++GLL+FLFLVG+E+D+S IR+ GK A  IA+AG+ L
Sbjct: 86  GQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMAL 145

Query: 132 PFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQT 191
           PF +G   S    +       V  G FI+F+GV+LS+TAFPVLARILA++KL+ T++G+ 
Sbjct: 146 PFCIGLAFSFIFHQV---SRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRI 202

Query: 192 AMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPI 251
           AM+AA  ND+ AWILLALA++LA   S       +SL S+WVL+S VAFV F   VVRP 
Sbjct: 203 AMSAALVNDMCAWILLALAIALAENDS-------TSLASLWVLLSSVAFVLFCFYVVRPG 255

Query: 252 MDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVV 311
           + W+ R+ + + +   + YICL L GVM+SGF+TD IG H++FGAFVFGL IP  G   V
Sbjct: 256 IWWIIRR-TPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIP-NGPLGV 313

Query: 312 RLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMAL 371
            L++K++DFVSGLLLPL+FA SGLKT+V KI+G   WGLLVLVI  A AGKI+GT ++A 
Sbjct: 314 TLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAF 373

Query: 372 LCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVM 431
              +P RE + LG LMNTKGLVE+IVLN+GR+++VL+DE FA++V++A+  T + TP+V 
Sbjct: 374 FYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVT 433

Query: 432 AIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINLTELIRTTEGST 491
            +Y+P RRL    ++ ++R    +     E ++  CVH P NVP +INL E    T+ S 
Sbjct: 434 VVYRPARRLVGYKRRTIQRSKHDA-----ELRMLVCVHTPRNVPTIINLLEASHPTKRSP 488

Query: 492 LKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYNQ-LRRVT 550
           + +YV+ LVELT R+S++L V  TRK+G P +N   R     D I+ + E Y Q    V+
Sbjct: 489 ICIYVLHLVELTGRASAMLIVHNTRKSGRPALN---RTQAQSDHIINAFENYEQHAGCVS 545

Query: 551 VRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVL 610
           V+  TAIS  STMHED+ ++AE+KRV++I++PFHKQ+  +G  E  + +  +R VN+ VL
Sbjct: 546 VQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGME--ATNPAFRGVNQNVL 603

Query: 611 LNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAENSGV 670
            NAPCSV +LVDRG      L     +  V   V ++F GGPDDR AL    RM+E+ G+
Sbjct: 604 ANAPCSVGILVDRGLSGATRLA----SNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGI 659

Query: 671 KVTLVRFVHQASGAATGGIAERATSD-----ISTENG--ISLDEAAVDDFMRKC--DGSV 721
            +T++RF+     A T      + SD     + T+      LDE  +++F  +   + S+
Sbjct: 660 TLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESI 719

Query: 722 ECEEKVMGTVKDEVLKI-GQSRDYELVVAGKGRFPSTAL-AELADHQPENVGLGPIGNIL 779
              EKV+   ++ V  I      ++L + G+G+   + L A L D   E   LG IG++L
Sbjct: 720 VYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWS-ECPELGAIGDLL 778

Query: 780 ASSDHGILASVLVIQQH 796
           ASSD     SVLV+QQ+
Sbjct: 779 ASSDFAATVSVLVVQQY 795

Length = 832

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>gnl\|CDD\|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>gnl\|CDD\|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>gnl\|CDD\|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	Back alignment and domain information

>gnl\|CDD\|216006 pfam00582, Usp, Universal stress protein family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		806
PLN03159		832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562		621	glutathione-regulated potassium-efflux system prot	100.0
PRK10669		558	putative cation:proton antiport protein; Provision	100.0
PRK03659		601	glutathione-regulated potassium-efflux system prot	100.0
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.97
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.96
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.95
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.93
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.93
PRK11175		305	universal stress protein UspE; Provisional	99.78
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	99.74
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.73
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.72
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.49
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.39
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	99.29
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	99.24
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	99.11
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	99.09
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	99.07
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.07
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.95
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.93
PRK15456		142	universal stress protein UspG; Provisional	98.88
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.87
cd01987		124	USP_OKCHK USP domain is located between the N-term	98.87
PRK15005		144	universal stress protein F; Provisional	98.85
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.82
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.81
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.79
PRK09982		142	universal stress protein UspD; Provisional	98.79
PRK15005		144	universal stress protein F; Provisional	98.76
PRK15118		144	universal stress global response regulator UspA; P	98.75
PRK09982		142	universal stress protein UspD; Provisional	98.73
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.68
cd01987		124	USP_OKCHK USP domain is located between the N-term	98.68
PRK15456		142	universal stress protein UspG; Provisional	98.66
PRK10116		142	universal stress protein UspC; Provisional	98.62
PRK10116		142	universal stress protein UspC; Provisional	98.62
cd00293		130	USP_Like Usp: Universal stress protein family. The	98.62
PRK15118		144	universal stress global response regulator UspA; P	98.61
PRK11175		305	universal stress protein UspE; Provisional	98.54
cd00293		130	USP_Like Usp: Universal stress protein family. The	98.18
COG0589		154	UspA Universal stress protein UspA and related nuc	97.98
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	97.97
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	97.85
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	97.71
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	97.6
TIGR00698		335	conserved hypothetical integral membrane protein.	97.57
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	97.46
COG0589		154	UspA Universal stress protein UspA and related nuc	97.41
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.35
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	97.25
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.23
COG0385		319	Predicted Na+-dependent transporter [General funct	97.2
COG3493		438	CitS Na+/citrate symporter [Energy production and	97.11
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	96.92
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	96.89
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	96.74
TIGR00793		314	kdgT 2-keto-3-deoxygluconate transporter. This fam	96.64
PRK03562		621	glutathione-regulated potassium-efflux system prot	96.51
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	96.37
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.33
PRK03659		601	glutathione-regulated potassium-efflux system prot	96.14
PRK10669		558	putative cation:proton antiport protein; Provision	96.12
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	96.1
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	96.08
PRK10490		895	sensor protein KdpD; Provisional	96.02
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	96.0
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	95.94
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	95.58
COG2855		334	Predicted membrane protein [Function unknown]	95.56
PRK05326		562	potassium/proton antiporter; Reviewed	95.4
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	95.38
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	94.97
PRK10490		895	sensor protein KdpD; Provisional	94.88
COG2855		334	Predicted membrane protein [Function unknown]	94.8
TIGR00698		335	conserved hypothetical integral membrane protein.	94.75
PRK05274		326	2-keto-3-deoxygluconate permease; Provisional	94.6
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	94.55
TIGR00841		286	bass bile acid transporter. Functionally character	94.53
PLN03159		832	cation/H(+) antiporter 15; Provisional	94.42
PRK03818		552	putative transporter; Validated	94.19
COG3180		352	AbrB Putative ammonia monooxygenase [General funct	93.48
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	93.0
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	92.99
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	92.74
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	92.7
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	92.51
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	92.48
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	92.48
TIGR01625		154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	92.05
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	91.02
PRK04972		558	putative transporter; Provisional	90.85
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	90.7
PRK04288		232	antiholin-like protein LrgB; Provisional	90.13
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	89.89
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	88.98
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	88.03
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	87.49
COG2985		544	Predicted permease [General function prediction on	87.21
TIGR00808		254	malonate_madM malonate transporter, MadM subunit.	87.19
PF03547		385	Mem_trans: Membrane transport protein; InterPro: I	86.79
TIGR02432		189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	86.68
PRK04972		558	putative transporter; Provisional	85.6
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	85.49
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	85.13
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	83.89
PRK10711		231	hypothetical protein; Provisional	83.61
TIGR00659		226	conserved hypothetical protein TIGR00659. Members	83.36
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	82.81
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	82.5
PF01171		182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	82.03
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	81.73
PRK03818		552	putative transporter; Validated	81.02
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	80.88

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.3e-144  Score=1293.16  Aligned_cols=763  Identities=48%  Similarity=0.827  Sum_probs=683.9

Q ss_pred             ccCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHH
Q 003629           10 NTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPI   89 (806)
Q Consensus        10 ~~~~~g~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~   89 (806)
                      +.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|.++.+.+.+||.++.+.
T Consensus        24 ~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~  103 (832)
T PLN03159         24 MITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMV  103 (832)
T ss_pred             CccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999888889999888889


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhc
Q 003629           90 LESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSIT  169 (806)
Q Consensus        90 l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~T  169 (806)
                      +++++++|++++||++|+|+|++.+||++|+++.+|+.++++|++++++++++++...   ........++++|+++|.|
T Consensus       104 l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~---~~~~~~~~~l~~g~alS~T  180 (832)
T PLN03159        104 LETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVS---RNVHQGTFILFLGVALSVT  180 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccchhHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998887774321   1122234578999999999


Q ss_pred             cHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003629          170 AFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVR  249 (806)
Q Consensus       170 s~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  249 (806)
                      |+||++++|+|+|+++++.||+++++++++|+++|++++++..+...+       ......+|.++..+++++++.+++|
T Consensus       181 s~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~-------~~~~~~l~~~l~~~~f~~~~~~v~r  253 (832)
T PLN03159        181 AFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAEND-------STSLASLWVLLSSVAFVLFCFYVVR  253 (832)
T ss_pred             hHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998877665421       2223456677777788888889999


Q ss_pred             HHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHH
Q 003629          250 PIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLY  329 (806)
Q Consensus       250 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plf  329 (806)
                      |++.|+.||+ +++++.+|.++.++++++++++++++.+|+|+++|||++|+++|+ +++++++.+|++++++++|+|+|
T Consensus       254 ~~~~~~~r~~-~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlF  331 (832)
T PLN03159        254 PGIWWIIRRT-PEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLF  331 (832)
T ss_pred             HHHHHHHHhC-cCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 888888899999999999999999999999999999999999997 78999999999999999999999


Q ss_pred             HHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCH
Q 003629          330 FASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLND  409 (806)
Q Consensus       330 F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~  409 (806)
                      |+++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++++++++.|++++
T Consensus       332 Fv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~  411 (832)
T PLN03159        332 FAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDD  411 (832)
T ss_pred             HHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCc
Confidence            99999999998887644566667777888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhccccccCcccccccccCCCCCCCCCCCceEEEEecCCCChhhHHHHHHhhhcCCC
Q 003629          410 EMFAILVVMALFTTFMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINLTELIRTTEG  489 (806)
Q Consensus       410 ~~~~~lvl~v~v~t~i~~pl~~~l~~~~~~~~~~~~r~i~~~~~~~~~~~~e~riLv~v~~~~~~~~li~l~~~~~~~~~  489 (806)
                      +.|++++++++++|.+++|++.++|+|++|+..|++|++|+     .++++|+|+|+|+|+++++++++||+++++++++
T Consensus       412 ~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~-----~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~  486 (832)
T PLN03159        412 ESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQR-----SKHDAELRMLVCVHTPRNVPTIINLLEASHPTKR  486 (832)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhcccccccccc-----CCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999998     6889999999999999999999999999999999


Q ss_pred             CCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHHHHhhc-CceEEEEeEeeccCCchHHHHH
Q 003629          490 STLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYNQL-RRVTVRHSTAISALSTMHEDIF  568 (806)
Q Consensus       490 ~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~~~~~~-~~v~v~~~~~vs~~~~~~~dI~  568 (806)
                      +|+++|+|||+|+++|+++.+++|+.++++.+..++.   ...+|+++++|++|+++ ++|+++++|++|||++||+|||
T Consensus       487 sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~---~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc  563 (832)
T PLN03159        487 SPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRT---QAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVC  563 (832)
T ss_pred             CCceEEEEEEEeecCCCccceeeeecccccccccccc---cccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHH
Confidence            9999999999999999999999998765543322211   14579999999999976 5899999999999999999999


Q ss_pred             HHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCCCCCCccccCCCCCCCceEEEEe
Q 003629          569 HVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVF  648 (806)
Q Consensus       569 ~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~~~~~~~~~~~~~~~~~~i~v~~  648 (806)
                      +.|+|+++++||+||||+|+.||+  ++++++.+|.+|++||++|||||||+||||..+..+...    ....+||+++|
T Consensus       564 ~~A~d~~~slIilpfhk~~~~dg~--~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~----~~~~~~v~~~F  637 (832)
T PLN03159        564 NLAEDKRVSLIIIPFHKQQTVDGG--MEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLAS----NQVSHHVAVLF  637 (832)
T ss_pred             HHHHhcCCCEEEECCCCccCCCCC--ccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccc----cccceeEEEEe
Confidence            999999999999999999999999  899999999999999999999999999999764322222    45678999999


Q ss_pred             cCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCC----cccc-c--cccCCCccccchHHHHHHHHHhc--CCC
Q 003629          649 LGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGG----IAER-A--TSDISTENGISLDEAAVDDFMRK--CDG  719 (806)
Q Consensus       649 ~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~----~~~~-~--~~~~~~~~~~~~d~~~l~~~~~~--~~~  719 (806)
                      +|||||||||+||+|||+||++++||+||++.++......    ..+. .  .....++.|+++||++++||+++  .++
T Consensus       638 ~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~  717 (832)
T PLN03159        638 FGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNE  717 (832)
T ss_pred             cCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999997541111000    0000 0  11122456888999999999998  468


Q ss_pred             cEEEEEEEeCChHHHHHHhcccCC-CcEEEEccCCC-CccccccccccCCCCcccccchhhhhcCCCCCcccEEEEeecc
Q 003629          720 SVECEEKVMGTVKDEVLKIGQSRD-YELVVAGKGRF-PSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQHN  797 (806)
Q Consensus       720 ~v~~~e~~v~~~~~~~~~i~~~~~-~DLiivG~~~~-~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvvqq~~  797 (806)
                      ++.|.|++|+|++|++..+|++++ |||+||||+|+ +|++++||+| |+||||||+|||+|||+||.+++||||||||.
T Consensus       718 ~v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~-w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~  796 (832)
T PLN03159        718 SIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTD-WSECPELGAIGDLLASSDFAATVSVLVVQQYV  796 (832)
T ss_pred             ceEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccc-cccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence            999999999999999999999998 99999999984 6999999999 99999999999999999999999999999996


Q ss_pred             cc
Q 003629          798 AA  799 (806)
Q Consensus       798 ~~  799 (806)
                      ..
T Consensus       797 ~~  798 (832)
T PLN03159        797 GT  798 (832)
T ss_pred             cC
Confidence            43

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PRK05274 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>PRK04288 antiholin-like protein LrgB; Provisional	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG2985 Predicted permease [General function prediction only]	Back alignment and domain information

>TIGR00808 malonate_madM malonate transporter, MadM subunit	Back alignment and domain information

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea	Back alignment and domain information

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>PRK10711 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00659 conserved hypothetical protein TIGR00659	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		806
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.5 bits (117), Expect = 4e-06
 Identities = 90/684 (13%), Positives = 187/684 (27%), Gaps = 208/684 (30%)

Query: 55  KVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSI 114
           K + ++   IL         +E  H         I+ S  ++     LF          +
Sbjct: 36  KDVQDMPKSIL-------SKEEIDH---------IIMSKDAVSGTLRLFWT--------L 71

Query: 115 RQNGKSAFKIALAGI---TLPFLLGAGVSLFLQKAVDGESKVGY-------GQFIIFIGV 164
               +   +  +  +      FL+    +   Q ++     +          Q      V
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 165 SLSITAFPVLARILADLK---LLTTQ----VGQTAMAAAAFNDIAAWILLALAVSLAGKA 217
           S  +  +  L + L +L+    +        G+T +A                       
Sbjct: 132 S-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS----------------- 173

Query: 218 SGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWV-ARQCSSDNDLVDDAYICLTLV 276
              +                  F  F          W+  + C+S   +++   +   L+
Sbjct: 174 YKVQCKMD--------------FKIF----------WLNLKNCNSPETVLE---MLQKLL 206

Query: 277 GVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLK 336
             +   + +       I       L I      + RL+K  + + + LL+        L 
Sbjct: 207 YQIDPNWTSRSDHSSNIK------LRIHSIQAELRRLLKS-KPYENCLLV--------LL 251

Query: 337 TDVAKIRGVEAWGLL--VLVIST-ACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLV 393
            +V   +   A+ L   +L+ +        L       + +     +L        K L+
Sbjct: 252 -NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD---EVKSLL 307

Query: 394 ELIVLNIGREKKVLNDEMFAIL-VVMALFTTFMTTPMVMAIYKPLR-----RLTPQNQQG 447
               L+   +   L  E+       +++    +     +A +   +     +LT   +  
Sbjct: 308 LK-YLDCRPQD--LPREVLTTNPRRLSIIAESIRDG--LATWDNWKHVNCDKLTTIIESS 362

Query: 448 LERQSPSSKNSKDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLY--------VMRL 499
           L    P+    +  F        P +     ++           L L         VM +
Sbjct: 363 LNVLEPA--EYRKMFD--RLSVFPPSA----HIPT-------ILLSLIWFDVIKSDVMVV 407

Query: 500 V-ELTDRSSSILTVQKTRKN------GLPLVNRFRRAGMS--HDQIVASLEAYNQLRRVT 550
           V +L   S     V+K  K        + L  + +       H  IV   + YN  +   
Sbjct: 408 VNKLHKYSL----VEKQPKESTISIPSIYLELKVKLENEYALHRSIV---DHYNIPKTFD 460

Query: 551 VRHSTAISALSTMHED--IF-HVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSH-----GW 602
                    L   + D   + H+             H  +  E  E +           +
Sbjct: 461 SDD------LIPPYLDQYFYSHIG-----------HH-LKNIEHPERMTLFRMVFLDFRF 502

Query: 603 REV---NRTVLLNAPCSVA-VLVD-RGFGCGAHLTVAEPAATVPKRVCIVFLGGPDD--- 654
            E    + +   NA  S+   L   + +    ++   +P         + FL   ++   
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFY--KPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 655 --------RRALDLGGRMAENSGV 670
                   R AL     MAE+  +
Sbjct: 561 CSKYTDLLRIAL-----MAEDEAI 579

PyMOL of 1vt4

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		806
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.7
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.66
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	99.53
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.51
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	99.5
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.41
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.39
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	99.32
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.24
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	99.19
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	99.09
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	98.87
d3clsc1		262	Small, beta subunit of electron transfer flavoprot	90.16

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.70  E-value=2.1e-16  Score=116.02  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=102.2

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCC-CCCCCCC--CC---CCCCHH
Q ss_conf             24899742999845689999863058999733899998540698840256654210799-8531112--47---886027
Q 003629          462 FKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGL-PLVNRFR--RA---GMSHDQ  535 (806)
Q Consensus       462 ~riLv~i~~~~~~~~~l~la~~la~~~~~~~~v~~Lhliel~~~~~~~~~~~~~~~~~~-~~~~~~~--~g---~~~~~~  535 (806)
                      .|||||+|+++.+..+++.+..++  +..+++++++|+++................... ...+...  ..   .+..++
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la--~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFK--TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   81 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTC--CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHH--HHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             829999879989999999999998--753997999983056654433332222453322200788999999999999999


Q ss_pred             HHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             99999997415734999747651699658989999872386599962654444799721124562408999998610998
Q 003629          536 IVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPC  615 (806)
Q Consensus       536 i~~~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIilg~h~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ApC  615 (806)
                      .++.+.......++.++..+..+   ++.+.|++.|++.++|+||||+|+++++.+.        .+|++.++|++++||
T Consensus        82 ~l~~~~~~~~~~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~--------~~GS~a~~vl~~s~~  150 (160)
T d1mjha_          82 KMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEI--------LLGSVTENVIKKSNK  150 (160)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTC--------SSCHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEC---CHHHHHHHHHHCCCCCEEEECCCCCCCCCCC--------CCCCHHHHHHHCCCC
T ss_conf             99999999876597699999945---5898776652024221477616899864214--------107099999962999


Q ss_pred             CEEEE
Q ss_conf             45999
Q 003629          616 SVAVL  620 (806)
Q Consensus       616 ~V~il  620 (806)
                      ||.++
T Consensus       151 pVlvV  155 (160)
T d1mjha_         151 PVLVV  155 (160)
T ss_dssp             CEEEE
T ss_pred             CEEEE
T ss_conf             89998

PyMOL of d1mjha_

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]}	Back information, alignment and structure