Citrus Sinensis ID: 003630

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800------
MVQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPDSDPRPSSSTRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYVPRFLVKIDRFASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYIEDETSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC
ccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHccccccccccEEEccccEEEcccccccccccEEEEccccccccccccccccccEEEEEEEEcccccHHHHHHHHccccccccHHHHHHHHHHHHHccccccEEEccccccccccccccccccEEEEEcEEEEEEccccEEEEEEEcccEEEcccccHHHHHHHHHHHccccccHHHHHHHHHHccccEEEEccccccccEEEEccccccccccEEEcccccEEEHHHHHHHHcccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHcccEEcccccEEEEEEEcccEEEEccccccccccccccEEccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccEEccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHcccEEEEEccHHHccccccccccEEEEEEEEccccccccccccEEEEEEEEccccccEEEEEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccEEEccccccccccccccccccccEEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHcccccccccc
ccEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHcHHHcccccccccccccEEccccccccccEEEEEEcccccccccccccccccEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHccccccEEcccccccccccccccccccEEEEccccccccccccccEEEEEccHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEEccccccHHccEccccccEEEEHHHHHHHHcccEEEcccccccccccccccccccHHHHHHHcHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHcccEEccccEEEEEEEccccEEEEccccccEEEcccccEEEccccEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHEEEEEcccccEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHHEEEEEcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEccccccccccccccccccccccEEcccEcccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHEEHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHcHHHcEEEEEc
mvqlaekdihhydvsitpwvtskKINRQIISQLINLYRltdlggripaydgmksiytagplpfqskefiielpdsdprpssstrpireRQFRVVIRLASKPDLYTLQQFLgrrhfeapyDVIQVLGVILSAassekhtvvgrsffptdhgpigqlgdgvEYWRGYFQSLRLTQMGLSlnidvsarsfyepiLVTEFVQNYCrnlsrplsdQVRLKVKKELKGIKVVLTHLetsnshritgissqpmsqlaftdgsaTSMSVIQYFRERYNIALQftslpallagsearpiylpmelsriVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANaynedtlvnkefgiqvaddltsvdarilpapmlkyhetgqeasvnpgfgqwnMINKKMFNGGRVEVWTCVNfstrlnrdvpfQFCQGLVDMcnskgmvfnpqpvipisssnpnQIEKALVDVHNRTTQQGKQLQLLIIIlpdvsgsyvpRFLVKIDRFaslvggrnTVLVDAVqkriplvtdrptiifgadvthpqpwggtspsIAAVVASMDWPEVAKYRglvsaqapHEEIIQDLYKsiqdpqwglvhGGMIRELLIAFRRstnfkphriifyrdgvgerQFSQVLLHEMNAIRQACAsleegyappvTFVVVQKRcrtrlfpaehnrcdltdrsgnilpgtvvdteichptefdfylnshagiqgtsrptryhvlydenrftadgLQVLTNNLCytyarctrsvsivppAYYAYLAAFRARYyiedetsaggstdgnrstaernlairplpvikdnvkdvmfyc
mvqlaekdihhydvsitpwvtskkiNRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPdsdprpssstrpirerqfrVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEKHTVVGrsffptdhgpigQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLsrplsdqvrLKVKKELKGIKVVlthletsnshritgissqpmSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTAllqatcqrprerEDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYVPRFLVKIDRFaslvggrntvlvdavqkriplvtdrpTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFrrstnfkphRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLfpaehnrcdltdrsgnilpGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYIEDEtsaggstdgnrstaernlairplpvikdnvkdVMFYC
MVQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELpdsdprpssstrpirerQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTqqgkqlqlliiilPDVSGSYVPRFLVKIDRFASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPayyaylaafraryyIEDETSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC
*******DIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIE******************QFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETS*****************FTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPI*********KALVDVHNRTTQQGKQLQLLIIILPDVSGSYVPRFLVKIDRFASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYIE********************AIRPLPVIKDNVKDVMF**
MVQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPD**************RQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEKHTVVGRSFFPTDH***GQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYT******Q**ALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYVPRFLVKIDRFASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHP********SIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPA*************ILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARY*****************************VIKDNVKDVMFYC
MVQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPD**********PIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYVPRFLVKIDRFASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYIEDET***********TAERNLAIRPLPVIKDNVKDVMFYC
MVQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPDS***********RERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYVPRFLVKIDRFASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAE*********SGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYIED********************IRPLPVIKDNVKDVMFYC
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPDSDPRPSSSTRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYVPRFLVKIDRFASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYIEDETSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query806 2.2.26 [Sep-21-2011]
Q9SJK3997 Protein argonaute 5 OS=Ar yes no 0.987 0.798 0.6 0.0
Q851R21058 Protein argonaute MEL1 OS yes no 0.991 0.755 0.568 0.0
O043791048 Protein argonaute 1 OS=Ar no no 0.991 0.762 0.554 0.0
Q7XSA21118 Protein argonaute 1B OS=O yes no 0.995 0.717 0.550 0.0
Q6K9721011 Protein argonaute 1C OS=O yes no 0.988 0.788 0.561 0.0
Q6EU141082 Protein argonaute 1A OS=O no no 0.995 0.741 0.541 0.0
Q9XGW1988 Protein argonaute 10 OS=A no no 0.996 0.812 0.539 0.0
Q5Z5B21038 Protein argonaute 1D OS=O no no 0.995 0.772 0.547 0.0
Q69VD5979 Protein argonaute PNH1 OS no no 0.993 0.818 0.535 0.0
Q7Y0011049 Protein argonaute 12 OS=O no no 0.983 0.755 0.535 0.0
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function desciption
 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/840 (60%), Positives = 614/840 (73%), Gaps = 44/840 (5%)

Query: 1   MVQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGP 60
           +VQ+A++D++HYDVSI P V SK +NR ++  L+  Y+ + LGG+ PAYDG KS+YTAGP
Sbjct: 168 LVQVADRDLYHYDVSINPEVISKTVNRNVMKLLVKNYKDSHLGGKSPAYDGRKSLYTAGP 227

Query: 61  LPFQSKEFIIELPDSDPRPSSSTRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYD 120
           LPF SKEF++ L +     SS     ++R F+V ++  +  DLY LQQFL R+  EAPYD
Sbjct: 228 LPFDSKEFVVNLAEKRADGSSG----KDRPFKVAVKNVTSTDLYQLQQFLDRKQREAPYD 283

Query: 121 VIQVLGVILSAASSEKHTVVGRSFFPTDHGPI-----GQLGDGVEYWRGYFQSLRLTQMG 175
            IQVL V+L    S  +  VGRSFF T  G       G+LGDG+EYWRGYFQSLRLTQMG
Sbjct: 284 TIQVLDVVLRDKPSNDYVSVGRSFFHTSLGKDARDGRGELGDGIEYWRGYFQSLRLTQMG 343

Query: 176 LSLNIDVSARSFYEPILVTEFVQNYC--RNLSRPLSDQVRLKVKKELKGIKVVLTHLETS 233
           LSLNIDVSARSFYEPI+VT+F+  +   R+L+RPL D  RLKVKK L+ +KV L H   +
Sbjct: 344 LSLNIDVSARSFYEPIVVTDFISKFLNIRDLNRPLRDSDRLKVKKVLRTLKVKLLHWNGT 403

Query: 234 NSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLP 293
            S +I+GISS P+ +L FT    +  +V+QYF E+YN  +++ +LPA+  GS+ RP+YLP
Sbjct: 404 KSAKISGISSLPIRELRFTLEDKSEKTVVQYFAEKYNYRVKYQALPAIQTGSDTRPVYLP 463

Query: 294 MELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGI 353
           MEL +I  GQRYT+RLNE+QVTALL+ATCQRP +RE+ I+ +   N YN+D  ++KEFG+
Sbjct: 464 MELCQIDEGQRYTKRLNEKQVTALLKATCQRPPDRENSIKNLVVKNNYNDD--LSKEFGM 521

Query: 354 QVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFST 413
            V   L S++AR+LP PMLKYH++G+E  VNP  GQWNMI+KKM NG +V  WTCV+FST
Sbjct: 522 SVTTQLASIEARVLPPPMLKYHDSGKEKMVNPRLGQWNMIDKKMVNGAKVTSWTCVSFST 581

Query: 414 RLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQ 473
           R++R +P +FC+ L+ MC SKGM F PQP IP  S  P  IE+AL+D+H R       LQ
Sbjct: 582 RIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKR----APGLQ 637

Query: 474 LLIIILPDVSGSY------------------VPRFLVKIDR---------FASLVGGRNT 506
           LLI+ILPDV+GSY                   PR + K+++              GGRNT
Sbjct: 638 LLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNT 697

Query: 507 VLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQ 566
           VL DA+++ IPL+TDRPTII GADVTHPQP   +SPSIAAVVASMDWPE+ KYRGLVSAQ
Sbjct: 698 VLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQ 757

Query: 567 APHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQV 626
           A  EEIIQDLYK +QDPQ GLVH G+IRE  IAFRR+T   P RIIFYRDGV E QFSQV
Sbjct: 758 AHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQIPQRIIFYRDGVSEGQFSQV 817

Query: 627 LLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVD 686
           LLHEM AIR+AC SL+E Y P VTFV+VQKR  TRLFP +H   D+TD+SGNI PGTVVD
Sbjct: 818 LLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVD 877

Query: 687 TEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSV 746
           T+ICHP EFDFYLNSHAGIQGTSRP  YHVL DEN FTAD LQ+LTNNLCYTYARCT+SV
Sbjct: 878 TKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSV 937

Query: 747 SIVPPAYYAYLAAFRARYYIEDETSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 806
           SIVPPAYYA+LAAFRARYY+E E S GGS+    ST      I  LP IKDNVK+VMFYC
Sbjct: 938 SIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGVGQVISQLPAIKDNVKEVMFYC 997
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.
Arabidopsis thaliana (taxid: 3702)
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query806
297734872 1032 unnamed protein product [Vitis vinifera] 0.993 0.776 0.657 0.0
359479401 1038 PREDICTED: LOW QUALITY PROTEIN: protein 0.998 0.775 0.657 0.0
255565533 987 eukaryotic translation initiation factor 0.995 0.812 0.659 0.0
224054242904 argonaute protein group [Populus trichoc 0.990 0.882 0.648 0.0
224106886 987 argonaute protein group [Populus trichoc 0.991 0.809 0.639 0.0
297826159 1001 hypothetical protein ARALYDRAFT_481718 [ 0.990 0.797 0.614 0.0
449520607 984 PREDICTED: LOW QUALITY PROTEIN: protein 0.987 0.808 0.629 0.0
449443600 987 PREDICTED: protein argonaute 5-like [Cuc 0.987 0.806 0.622 0.0
4510428 997 Argonaute (AGO1)-like protein [Arabidops 0.987 0.798 0.6 0.0
30683679 997 Argonaute family protein [Arabidopsis th 0.987 0.798 0.6 0.0
>gi|297734872|emb|CBI17106.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1127 bits (2914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/842 (65%), Positives = 665/842 (78%), Gaps = 41/842 (4%)

Query: 2    VQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPL 61
            VQ+ +++  HYDV+ITP V SK +NR+II QL++LY+++ LG R PAYDG KS+YTAGPL
Sbjct: 195  VQVDDREFCHYDVTITPEVMSKTLNREIIKQLVDLYKVSHLGKRSPAYDGSKSLYTAGPL 254

Query: 62   PFQSKEFIIELPDSDPRPSSSTRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDV 121
            PF SKEF+++L  +D        P RER+F+V I+LASK DLY LQQFL  R   AP + 
Sbjct: 255  PFTSKEFVVKLVKTD----DGAGPRREREFKVAIKLASKGDLYQLQQFLCGRQLSAPQET 310

Query: 122  IQVLGVILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNID 181
            IQ+L V+L A+ SEK+TVVGRSFF T  G  G+LGDG+EYWRGY+QSLR TQMGLS NID
Sbjct: 311  IQILDVVLRASPSEKYTVVGRSFFSTQLGRKGELGDGLEYWRGYYQSLRPTQMGLSFNID 370

Query: 182  VSARSFYEPILVTEFVQNYC--RNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRIT 239
            VSARSFYE ILVT+FV  +   R++SR LSDQ R+KVKK LKG+KV LTH E +  ++I 
Sbjct: 371  VSARSFYESILVTDFVAKHLKLRDVSRALSDQDRIKVKKALKGVKVQLTHREFAKRYKIA 430

Query: 240  GISSQPMSQLAFT-DGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSR 298
            G+SSQP +QL FT D  AT +SV+QYFR++YNI L++ S P+L AGS+++PIYLPME+ +
Sbjct: 431  GVSSQPTNQLMFTLDDEATRVSVVQYFRQKYNIVLKYPSWPSLQAGSDSKPIYLPMEVCK 490

Query: 299  IVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADD 358
            IV GQRYT++LN+RQVTALL+ATCQRP ERE  I+ M R N ++ D +V  EFGI++ ++
Sbjct: 491  IVEGQRYTRKLNDRQVTALLRATCQRPSEREGNIQEMVRKNNFSTDRVVRDEFGIRINEE 550

Query: 359  LTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRD 418
            LT VDAR+LP PMLKYH++G+EA V+P  GQWNMI+KKM NGG V+ WTC+NFS R+++D
Sbjct: 551  LTLVDARVLPPPMLKYHDSGREAKVDPRVGQWNMIDKKMVNGGTVQFWTCLNFSFRVHQD 610

Query: 419  VPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTT-------QQGKQ 471
            +P  FC+ LV+MC SKGMVFNP P++PI S++PNQIEK LVDVH ++        Q GKQ
Sbjct: 611  LPSGFCRELVNMCVSKGMVFNPNPLLPIQSAHPNQIEKVLVDVHKQSMAKLASMGQNGKQ 670

Query: 472  LQLLIIILPDVSGSY------------------VPRFLVKIDR--FASL-------VGGR 504
            LQLLIIILPDV+GSY                   P    K+++  F ++       VGGR
Sbjct: 671  LQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPSQASKLNKQYFENVALKINVKVGGR 730

Query: 505  NTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVS 564
            NTVL DA+Q++IPLV+D PTIIFGADVTHPQP   +SPSIAAVVASMDWPEV KYRGLVS
Sbjct: 731  NTVLFDAIQRKIPLVSDLPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVS 790

Query: 565  AQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFS 624
            AQ   EEIIQDLYK+  DP  G+ HGGMIRELLIAFRRST +KP RIIFYRDGV E QFS
Sbjct: 791  AQHHREEIIQDLYKTTADPHKGVTHGGMIRELLIAFRRSTGYKPSRIIFYRDGVSEGQFS 850

Query: 625  QVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTV 684
            QVLLHEM++IR+ACASLEEGY PPVTFVVVQKR  TR FP++H   DLTDRSGNILPGTV
Sbjct: 851  QVLLHEMDSIRKACASLEEGYLPPVTFVVVQKRHHTRFFPSDHRSRDLTDRSGNILPGTV 910

Query: 685  VDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTR 744
            VDT+ICHPTEFDFYLNSHAGIQGTSRPT YHVLYDEN+FTAD LQ+LTNNLCYTYARCTR
Sbjct: 911  VDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADILQILTNNLCYTYARCTR 970

Query: 745  SVSIVPPAYYAYLAAFRARYYIEDETSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMF 804
            SVSIVPPAYYA+LAAFRARYYIE +TS  GS  G+RST ERNL +R LP +K+NVKDVMF
Sbjct: 971  SVSIVPPAYYAHLAAFRARYYIEGDTSDSGSGSGDRSTRERNLEVRLLPAVKENVKDVMF 1030

Query: 805  YC 806
            YC
Sbjct: 1031 YC 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479401|ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255565533|ref|XP_002523757.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223537061|gb|EEF38697.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224054242|ref|XP_002298162.1| argonaute protein group [Populus trichocarpa] gi|222845420|gb|EEE82967.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106886|ref|XP_002314317.1| argonaute protein group [Populus trichocarpa] gi|222850725|gb|EEE88272.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297826159|ref|XP_002880962.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] gi|297326801|gb|EFH57221.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449520607|ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449443600|ref|XP_004139565.1| PREDICTED: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|4510428|gb|AAD21514.1| Argonaute (AGO1)-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30683679|ref|NP_850110.1| Argonaute family protein [Arabidopsis thaliana] gi|322510009|sp|Q9SJK3.2|AGO5_ARATH RecName: Full=Protein argonaute 5 gi|330252961|gb|AEC08055.1| Argonaute family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query806
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.590 0.477 0.531 7.7e-251
UNIPROTKB|Q851R21058 MEL1 "Protein argonaute MEL1" 0.595 0.453 0.486 8.1e-236
UNIPROTKB|Q69VD5979 PHN1 "Protein argonaute PNH1" 0.569 0.468 0.462 3.2e-221
TAIR|locus:2170897988 AGO10 "ARGONAUTE 10" [Arabidop 0.570 0.465 0.466 1.8e-220
UNIPROTKB|Q6DCX2862 eif2c2 "Protein argonaute-2" [ 0.337 0.315 0.501 2.1e-128
UNIPROTKB|O77503840 EIF2C2 "Protein argonaute-2" [ 0.337 0.323 0.505 7e-128
UNIPROTKB|B0JYP5860 EIF2C2 "Protein argonaute-2" [ 0.337 0.316 0.505 1.1e-127
UNIPROTKB|Q6QME8860 EIF2C2 "Protein argonaute-2" [ 0.337 0.316 0.505 1.1e-127
UNIPROTKB|Q9UKV8859 EIF2C2 "Protein argonaute-2" [ 0.337 0.316 0.505 1.1e-127
MGI|MGI:2446632860 Ago2 "argonaute RISC catalytic 0.337 0.316 0.505 1.1e-127
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1327 (472.2 bits), Expect = 7.7e-251, Sum P(2) = 7.7e-251
 Identities = 262/493 (53%), Positives = 342/493 (69%)

Query:     1 MVQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGP 60
             +VQ+A++D++HYDVSI P V SK +NR ++  L+  Y+ + LGG+ PAYDG KS+YTAGP
Sbjct:   168 LVQVADRDLYHYDVSINPEVISKTVNRNVMKLLVKNYKDSHLGGKSPAYDGRKSLYTAGP 227

Query:    61 LPFQSKEFIIELXXXXXXXXXXXXXXXXXQFRVVIRLASKPDLYTLQQFLGRRHFEAPYD 120
             LPF SKEF++ L                  F+V ++  +  DLY LQQFL R+  EAPYD
Sbjct:   228 LPFDSKEFVVNLAEKRADGSSGKDR----PFKVAVKNVTSTDLYQLQQFLDRKQREAPYD 283

Query:   121 VIQVLGVILSAASSEKHTVVGRSFFPTDHGPI-----GQLGDGVEYWRGYFQSLRLTQMG 175
              IQVL V+L    S  +  VGRSFF T  G       G+LGDG+EYWRGYFQSLRLTQMG
Sbjct:   284 TIQVLDVVLRDKPSNDYVSVGRSFFHTSLGKDARDGRGELGDGIEYWRGYFQSLRLTQMG 343

Query:   176 LSLNIDVSARSFYEPILVTEFVQNYC--RNLSRPLSDQVRLKVKKELKGIKVVLTHLETS 233
             LSLNIDVSARSFYEPI+VT+F+  +   R+L+RPL D  RLKVKK L+ +KV L H   +
Sbjct:   344 LSLNIDVSARSFYEPIVVTDFISKFLNIRDLNRPLRDSDRLKVKKVLRTLKVKLLHWNGT 403

Query:   234 NSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLP 293
              S +I+GISS P+ +L FT    +  +V+QYF E+YN  +++ +LPA+  GS+ RP+YLP
Sbjct:   404 KSAKISGISSLPIRELRFTLEDKSEKTVVQYFAEKYNYRVKYQALPAIQTGSDTRPVYLP 463

Query:   294 MELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGI 353
             MEL +I  GQRYT+RLNE+QVTALL+ATCQRP +RE+ I+ +   N YN+D  ++KEFG+
Sbjct:   464 MELCQIDEGQRYTKRLNEKQVTALLKATCQRPPDRENSIKNLVVKNNYNDD--LSKEFGM 521

Query:   354 QVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFST 413
              V   L S++AR+LP PMLKYH++G+E  VNP  GQWNMI+KKM NG +V  WTCV+FST
Sbjct:   522 SVTTQLASIEARVLPPPMLKYHDSGKEKMVNPRLGQWNMIDKKMVNGAKVTSWTCVSFST 581

Query:   414 RLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTXXXXXXX 473
             R++R +P +FC+ L+ MC SKGM F PQP IP  S  P  IE+AL+D+H R         
Sbjct:   582 RIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRAPGLQLLIV 641

Query:   474 XXXXXXPDVSGSY 486
                   PDV+GSY
Sbjct:   642 IL----PDVTGSY 650
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0048441 "petal development" evidence=RCA
GO:0048443 "stamen development" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DCX2 eif2c2 "Protein argonaute-2" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|O77503 EIF2C2 "Protein argonaute-2" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|B0JYP5 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6QME8 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKV8 EIF2C2 "Protein argonaute-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2446632 Ago2 "argonaute RISC catalytic subunit 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UKV8AGO2_HUMAN3, ., 1, ., 2, 6, ., n, 20.38500.94160.8835yesno
O77503AGO2_RABIT3, ., 1, ., 2, 6, ., n, 20.38380.94160.9035yesno
Q6K972AGO1C_ORYSJNo assigned EC number0.56120.98880.7883yesno
Q7XSA2AGO1B_ORYSJNo assigned EC number0.55010.99500.7173yesno
Q9QZ81AGO2_RAT3, ., 1, ., 2, 6, ., n, 20.38500.94160.8825yesno
Q851R2MEL1_ORYSJNo assigned EC number0.56850.99130.7551yesno
Q8CJG0AGO2_MOUSE3, ., 1, ., 2, 6, ., n, 20.38500.94160.8825yesno
Q9SJK3AGO5_ARATHNo assigned EC number0.60.98750.7983yesno
O74957AGO1_SCHPONo assigned EC number0.30710.84240.8141yesno
Q6QME8AGO2_BOVIN3, ., 1, ., 2, 6, ., n, 20.38500.94160.8825yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query806
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 1e-168
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 1e-162
pfam02171296 pfam02171, Piwi, Piwi domain 1e-86
smart00950301 smart00950, Piwi, This domain is found in the prot 8e-81
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 3e-55
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 6e-48
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 6e-28
pfam02170114 pfam02170, PAZ, PAZ domain 2e-24
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 3e-20
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 4e-10
smart00949138 smart00949, PAZ, This domain is named PAZ after th 3e-08
cd02845117 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf 6e-04
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
 Score =  493 bits (1272), Expect = e-168
 Identities = 194/454 (42%), Positives = 247/454 (54%), Gaps = 67/454 (14%)

Query: 349 KEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTC 408
           KEFGI V+ ++ +V  R+LP P LKY       +V P  G WN+  KK   GG +  W  
Sbjct: 4   KEFGISVSKEMITVPGRVLPPPKLKYG--DSSKTVPPRNGSWNLRGKKFLEGGPIRSWAV 61

Query: 409 VNFSTRLNRDVPFQ----FCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNR 464
           +NF+              F   LV      G+      +    +S   ++E+    +   
Sbjct: 62  LNFAGPRRSREERADLRNFVDQLVKTVIGAGI-----NITTAIASVEGRVEELFAKLKQ- 115

Query: 465 TTQQGKQLQLLIIILPD-----------------------VSGSYVPRFLVKIDRFASLV 501
              +G+  QL+++ILP                        V    V +      ++ + V
Sbjct: 116 --AKGEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKG--NPQYFANV 171

Query: 502 --------GGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQP-WGGTSPSIAAVVASMD 552
                   GG N  L        PL+T  PT++ GADVTHP P     +PSIAAVVAS+D
Sbjct: 172 ALKINLKLGGINHSLEP---DIRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVD 228

Query: 553 WPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRII 612
           W   A+Y   V  Q+  +EII DL               M+RELL AF+++T   P RII
Sbjct: 229 WHL-AQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERII 274

Query: 613 FYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDL 672
           +YRDGV E QF+QVL  E+ AIR+ACA L  GY P +TF+VVQKR  TR FP + +  D 
Sbjct: 275 YYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDAD- 333

Query: 673 TDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLT 732
             ++GN+ PGTVVD  I HP EFDFYL SHAGIQGT+RPT YHVL+DE  FTAD LQ LT
Sbjct: 334 -GKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQTLT 392

Query: 733 NNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYI 766
            NLCYTYARCTRSVSI PPAYYA+LAA RAR Y+
Sbjct: 393 YNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 806
PLN03202900 protein argonaute; Provisional 100.0
KOG1041876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.91
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.85
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.83
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.8
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.57
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.49
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.69
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 97.82
PF13032138 DUF3893: Domain of unknown function (DUF3893) 90.95
PF08459155 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I 81.97
PRK11617224 endonuclease V; Provisional 80.3
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.8e-158  Score=1414.37  Aligned_cols=775  Identities=36%  Similarity=0.595  Sum_probs=653.7

Q ss_pred             CCCceEEEEEEEcc----CCCChHHHHHHHHHHHHHhhhccCCCCceeeeCCceeeecCCCCCCCceEEEEcCCCCCCC-
Q 003630            5 AEKDIHHYDVSITP----WVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPDSDPRP-   79 (806)
Q Consensus         5 ~~~~~y~Y~V~i~p----~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~v~l~~~~~~~-   79 (806)
                      |+..+|||||+|+|    +++++++++.|++++++++... +.+..+||||+++|||+++||.+..++.|++.++..+. 
T Consensus        60 ~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~  138 (900)
T PLN03202         60 PDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRN  138 (900)
T ss_pred             CCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCceeecCccceEECccCCCCCceEEEEecccccccc
Confidence            57789999999996    4455778889999888765433 55557899999999999999987778888876431100 


Q ss_pred             --------CCCC---------CCCCCcEEEEEEEeccccchHHHHHHhccCCCCCChhHHHHHHHHHcccccCC-cceec
Q 003630           80 --------SSST---------RPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEK-HTVVG  141 (806)
Q Consensus        80 --------~~~~---------~~~~~~~~~V~I~~~~~i~l~~l~~~l~~~~~~~~~~~iq~Lniilr~~~~~~-~~~~g  141 (806)
                              +...         ...+.+.|+|+|++++++++.+|.+||.|.....+.++||+||+|||+.++.. +..+|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~g  218 (900)
T PLN03202        139 NGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVR  218 (900)
T ss_pred             cccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceec
Confidence                    0000         01246889999999999999999999999988888899999999999987655 88999


Q ss_pred             ccccCCCCCCccccCCcEEEEEeEEEEEeeecceeEEeeeccccccccCccHHHHHHHHhhhcCCCCCHHHHHHHHHHhc
Q 003630          142 RSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELK  221 (806)
Q Consensus       142 r~ff~~~~~~~~~l~~Gle~~~G~~~Svr~~~~~l~LniDv~~~~F~~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lk  221 (806)
                      |+||.+......++++|+|+|+||++|||+++++|+||+|+++++||++++|+|+|.++.+.  +.....++.++.++|+
T Consensus       219 r~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~lk  296 (900)
T PLN03202        219 QSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNV--RDPFQIDWSKAKRMLK  296 (900)
T ss_pred             cccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCc--CCccchhHHHHHHHhc
Confidence            99998654445678999999999999999999999999999999999999999999887521  1111234667999999


Q ss_pred             CcEEEEeecCCcceEEEecccCCCCCCceEecC--C-------CceeeHHHHHHHHcCCcccCC-CCCeeecCCCCCCce
Q 003630          222 GIKVVLTHLETSNSHRITGISSQPMSQLAFTDG--S-------ATSMSVIQYFRERYNIALQFT-SLPALLAGSEARPIY  291 (806)
Q Consensus       222 Gl~V~~~~~~~~~~~~I~~i~~~~a~~~~F~~~--~-------g~~iSV~eYfk~~Y~i~L~~p-~lP~v~~g~~~~~~y  291 (806)
                      |++|.++|+  +++|+|.||++.++++.+|..+  +       |++|||+|||+++||++|+|| ++|||.+|+.++++|
T Consensus       297 Gl~V~t~~~--~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~y  374 (900)
T PLN03202        297 NLRVKVSPS--NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTY  374 (900)
T ss_pred             CCEEEEecC--CceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeE
Confidence            999999995  4799999999999999999322  1       358999999999999999996 999999999888999


Q ss_pred             ecccceeeccCccccCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCcccccceeeEEEcccceeeeeEEeCCCc
Q 003630          292 LPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPM  371 (806)
Q Consensus       292 lP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~~fGi~i~~~~~~v~grvL~~P~  371 (806)
                      ||||||.|+|||+++++|++.|+++||++|+.+|.+|.+.|.++++.++++.++.|+ +|||+|+++|++|+||+||||+
T Consensus       375 lP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~-~fGi~i~~~~~~V~gRvL~~P~  453 (900)
T PLN03202        375 FPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLR-SCGISISSQFTQVEGRVLPAPK  453 (900)
T ss_pred             EcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHH-HCCcEecCCceEEeEEEcCCce
Confidence            999999999999999999999999999999999999999999999988888889999 9999999999999999999999


Q ss_pred             eeeccCCcccccCCCCCcccccCceeecCccccceEEEeeCCCCCCCcHHHHHHHHHHHHhcCCeecCCCCeeeccC---
Q 003630          372 LKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISS---  448 (806)
Q Consensus       372 i~y~~~~~~~~v~p~~G~Wnl~~~~f~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~~~~~~~~---  448 (806)
                      |.|+++.   .+.|++|+||+++++|+.++.+++|+|++|.++   .+++.|++.|.+.|+.+||.+..+..+....   
T Consensus       454 I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~  527 (900)
T PLN03202        454 LKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR---CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQF  527 (900)
T ss_pred             eecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc---hhHHHHHHHHHHHHHHCCceeCCCcccccccccc
Confidence            9998642   346789999999999999999999999988643   3689999999999999999997654321111   


Q ss_pred             ---CChhHHHHHHHHHHHHHhhcCCCceEEEEEccCC-CCC-CC------------Ccccccc---cc---------ccc
Q 003630          449 ---SNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-SGS-YV------------PRFLVKI---DR---------FAS  499 (806)
Q Consensus       449 ---~~~~~~~~~l~~~~~~~~~~~~~~~lv~~ilp~~-~~~-Y~------------~~~~~k~---~~---------l~~  499 (806)
                         ...+.++..++.+.+...   ..++|+|||+|++ +.+ |+            ++||...   ++         +|+
T Consensus       528 ~~~~~~~~~~~~~~~l~~~~~---~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~  604 (900)
T PLN03202        528 RRAPPPVRVEKMFEQIQSKLP---GPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINA  604 (900)
T ss_pred             ccccchHHHHHHHHHHHHhcc---CCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhh
Confidence               112345555555554432   4689999999975 455 87            5666522   11         679


Q ss_pred             ccCcceeeeccccccCCCccCCCCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCceeEEEEEEcCCCchhhhchhhh
Q 003630          500 LVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKS  579 (806)
Q Consensus       500 KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~~~~E~i~~l~~~  579 (806)
                      ||||+||.++.+.+..+|++.+.+|||||+||+||+|++...|||||+|||+||..+++|.+.++.|.+++|+|++|+..
T Consensus       605 KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~  684 (900)
T PLN03202        605 KLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKP  684 (900)
T ss_pred             hhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhcc
Confidence            99999998875544567888888999999999999988655799999999999878999999999999999999987432


Q ss_pred             cCCCCCccchhhHHHHHHHHHHHhc-CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecc
Q 003630          580 IQDPQWGLVHGGMIRELLIAFRRST-NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRC  658 (806)
Q Consensus       580 ~~~~~~~~~~~~~~~~~L~~f~~~~-~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh  658 (806)
                      ..+.    .+++|+.++|+.|++.+ |.+|++|||||||||||||.+|+++|+++|++||.+++++|+|+||||||+|||
T Consensus       685 ~~~~----~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh  760 (900)
T PLN03202        685 VGDK----DDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNH  760 (900)
T ss_pred             cccc----chHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccc
Confidence            2211    13789999999999865 699999999999999999999999999999999999998999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCcceeecccccCCCcccEEEeecCCCCCccCCCeeEEEecCCCCChhHHHHHHHHhhhc
Q 003630          659 RTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYT  738 (806)
Q Consensus       659 ~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~de~~~~~d~lq~lt~~Lc~~  738 (806)
                      |+|||+.+        +.+||+||||||++||||..||||||||.++|||||||||+||+||+++++|+||+|||+|||+
T Consensus       761 ~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~  832 (900)
T PLN03202        761 HTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYV  832 (900)
T ss_pred             eeeeeccC--------CCCCCCCceEeccccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            99999863        3689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcccCChhhhHHHHHHHHhhhcccccCCCCCCcCCCCcccccccCCCCcccccccCCCceeC
Q 003630          739 YARCTRSVSIVPPAYYAYLAAFRARYYIEDETSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC  806 (806)
Q Consensus       739 y~r~t~sVsip~P~yyA~~~a~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~y~  806 (806)
                      |+|||+||||||||||||++|+|||+|++.+.++++++++++++...+.+...+.+||++++++||||
T Consensus       833 y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~Mfy~  900 (900)
T PLN03202        833 YQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGITSAGAVPVPELPRLHENVASSMFFC  900 (900)
T ss_pred             hcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccCCCCccccccccccchhhcCCeeeC
Confidence            99999999999999999999999999998543333332222221112222446788999999999998

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] Back     alignment and domain information
>PRK11617 endonuclease V; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query806
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 1e-137
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 1e-137
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 3e-33
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-26
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 1e-20
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 4e-19
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 8e-19
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 4e-18
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 3e-14
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 3e-14
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 4e-14
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 1e-12
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 8e-09
1r6z_P509 The Crystal Structure Of The Argonaute2 Paz Domain 1e-05
1vyn_A143 Structure And Nucleic Acid Binding Of The Drosophil 4e-05
3mj0_A124 Crystal Structure Of Drosophia Ago-Paz Domain In Co 2e-04
1t2r_A123 Structural Basis For 3' End Recognition Of Nucleic 2e-04
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  486 bits (1252), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 305/838 (36%), Positives = 433/838 (51%), Gaps = 73/838 (8%)
Query: 8   DIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKE 67
           DI+HY++ I P    +++NR+I+  ++  ++    G R P +DG K++YTA PLP    +
Sbjct: 55  DIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDK 114
Query: 68  FIIELXXXXXXXXXXXXXXXXXQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGV 127
             +E+                  F+V I+  S   L  L   L  R    P++ IQ L V
Sbjct: 115 VELEVTLPGEGKDRI--------FKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDV 166
Query: 128 ILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSF 187
           ++    S ++T VGRSFF    G    LG G E W G+ QS+R +   + LNIDVSA +F
Sbjct: 167 VMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAF 226
Query: 188 YEPILVTEFVQNYCRNLS--------RPLSDQVRLKVKKELKGIKVVLTHL-ETSNSHRI 238
           Y+   V EFV   C  L         +PL+D  R+K  KE+KG+KV +TH  +    +R+
Sbjct: 227 YKAQPVIEFV---CEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRV 283
Query: 239 TGISSQPMSQLAF----TDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPM 294
             ++ +P S   F      G     +V QYF++R+ + L++  LP L  G E +  YLP+
Sbjct: 284 CNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPL 343
Query: 295 ELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQ 354
           E+  IVAGQR  ++L + Q + +++AT +   +R++ I  + R+ ++N D  V +EFGI 
Sbjct: 344 EVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYV-REFGIM 402
Query: 355 VADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFS-T 413
           V D++T V  R+L  P + Y    + A   P  G W+M NK+   G  ++VW    F+  
Sbjct: 403 VKDEMTDVTGRVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQ 461
Query: 414 RLNRDVPFQ-FCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTXXXXXX 472
           R   +V  + F + L  +    GM    QP     +   + +E     + N         
Sbjct: 462 RQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVV 521
Query: 473 XXXXXXXPDVS-----GSYV-----------------PRFLVKID-RFASLVGGRNTVLV 509
                  P  +     G  V                 P+ L  +  +    +GG N +L+
Sbjct: 522 VILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILL 581
Query: 510 DAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPH 569
              Q R P V  +P I  GADVTHP    G  PSIAAVV SMD     +Y   V  Q   
Sbjct: 582 P--QGRPP-VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHR 637
Query: 570 EEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLH 629
           +EIIQDL               M+RELLI F +ST FKP RIIFYRDGV E QF QVL H
Sbjct: 638 QEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHH 684
Query: 630 EMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEI 689
           E+ AIR+AC  LE+ Y P +TF+VVQKR  TRLF  + N  +   +SGNI  GT VDT+I
Sbjct: 685 ELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKN--ERVGKSGNIPAGTTVDTKI 742
Query: 690 CHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIV 749
            HPTEFDFYL SHAGIQGTSRP+ YHVL+D+NRF++D LQ+LT  LC+TY RCTRSVSI 
Sbjct: 743 THPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIP 802
Query: 750 PPXXXXXXXXXXXXXXI---EDETSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMF 804
            P              +   E +++ G  T G  +  +     + + V +D ++ + F
Sbjct: 803 APAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYF 860
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 Back     alignment and structure
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 Back     alignment and structure
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query806
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 0.0
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 0.0
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 1e-112
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 6e-89
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 3e-88
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 2e-80
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 2e-47
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 2e-40
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 2e-30
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 3e-28
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 3e-24
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 3e-22
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 6e-21
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 4e-17
3qir_A148 PIWI-like protein 2; structural genomics consortiu 6e-17
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-16
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 8e-13
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 1e-07
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  698 bits (1803), Expect = 0.0
 Identities = 313/845 (37%), Positives = 448/845 (53%), Gaps = 74/845 (8%)

Query: 2   VQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPL 61
           + + + DI+HY++ I P    +++NR+I+  ++  ++    G R P +DG K++YTA PL
Sbjct: 49  MDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPL 108

Query: 62  PFQSKEFIIELPDSDPRPSSSTRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDV 121
           P    +  +E+              ++R F+V I+  S   L  L   L  R    P++ 
Sbjct: 109 PIGRDKVELEVTLPGEG--------KDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFET 160

Query: 122 IQVLGVILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNID 181
           IQ L V++    S ++T VGRSFF    G    LG G E W G+ QS+R +   + LNID
Sbjct: 161 IQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNID 220

Query: 182 VSARSFYEPILVTEFVQNYC-----RNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNS- 235
           VSA +FY+   V EFV             +PL+D  R+K  KE+KG+KV +TH       
Sbjct: 221 VSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRK 280

Query: 236 HRITGISSQPMSQLAFT----DGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIY 291
           +R+  ++ +P S   F      G     +V QYF++R+ + L++  LP L  G E +  Y
Sbjct: 281 YRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTY 340

Query: 292 LPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEF 351
           LP+E+  IVAGQR  ++L + Q + +++AT +   +R++ I  + R+ ++N D    +EF
Sbjct: 341 LPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDP-YVREF 399

Query: 352 GIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNF 411
           GI V D++T V  R+L  P + Y     +A   P  G W+M NK+   G  ++VW    F
Sbjct: 400 GIMVKDEMTDVTGRVLQPPSILYGG-RNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACF 458

Query: 412 ST--RLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQG 469
           +   +        F + L  +    GM    QP     +   + +E     + N      
Sbjct: 459 APQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKN----TY 514

Query: 470 KQLQLLIIILPDVSGSY------------VPRFLVKIDRFASL---------------VG 502
             LQL+++ILP  +  Y            +    V++                     +G
Sbjct: 515 AGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLG 574

Query: 503 GRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGL 562
           G N +L+    +  P V  +P I  GADVTHP    G  PSIAAVV SMD     +Y   
Sbjct: 575 GVNNILLP---QGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCAT 630

Query: 563 VSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQ 622
           V  Q   +EIIQDL               M+RELLI F +ST FKP RIIFYRDGV E Q
Sbjct: 631 VRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQ 677

Query: 623 FSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPG 682
           F QVL HE+ AIR+AC  LE+ Y P +TF+VVQKR  TRLF    ++ +   +SGNI  G
Sbjct: 678 FQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCT--DKNERVGKSGNIPAG 735

Query: 683 TVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARC 742
           T VDT+I HPTEFDFYL SHAGIQGTSRP+ YHVL+D+NRF++D LQ+LT  LC+TY RC
Sbjct: 736 TTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRC 795

Query: 743 TRSVSIVPPAYYAYLAAFRARYYIEDE--TSAGGSTDGNRSTAERNLAIRPLPVIKDNVK 800
           TRSVSI  PAYYA+L AFRARY++ D+   SA GS    +S    + A+     +  +  
Sbjct: 796 TRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTL 855

Query: 801 DVMFY 805
             M++
Sbjct: 856 RTMYF 860
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 806
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 8e-78
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 2e-47
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 5e-44
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 1e-29
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 8e-28
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 1e-11
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  254 bits (650), Expect = 8e-78
 Identities = 56/405 (13%), Positives = 125/405 (30%), Gaps = 95/405 (23%)

Query: 401 GRVEVWTCVNFSTRLNRDVPFQ---FCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKA 457
            + +V +    S  + + + ++   F + L++   +KG+    +    I +    + ++ 
Sbjct: 33  VKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEK 92

Query: 458 LVDVHNRTTQQGKQLQLLIIILPDVSG----------SYVPRFLVKI------------- 494
           L+ V N+     K + L+I+ L +              +V R L+K              
Sbjct: 93  LIPVINKI----KDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLK 148

Query: 495 -DRFASLV-----------GGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSP 542
            +    ++           G     L +        +  +     G D++     G T  
Sbjct: 149 NENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTVN 200

Query: 543 SIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRR 602
           ++A         E+ +Y  L S  A  E++ +                  I ++     +
Sbjct: 201 AVAFTKIFNSKGELVRYY-LTSYPAFGEKLTEK----------------AIGDVFSLLEK 243

Query: 603 STNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRL 662
               K  +I+ +RDG        +   E+ A ++      E Y   +  + + KR   R 
Sbjct: 244 LGFKKGSKIVVHRDGR-------LYRDEVAAFKKYG----ELYGYSLELLEIIKRNNPRF 292

Query: 663 FPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENR 722
           F            +   + G           +       +   +GT +P +   +Y E  
Sbjct: 293 FS-----------NEKFIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL- 336

Query: 723 FTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYIE 767
              + L     +L        + + +    +Y+          IE
Sbjct: 337 -PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE 380
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query806
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.96
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.95
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=444.34  Aligned_cols=308  Identities=16%  Similarity=0.158  Sum_probs=242.3

Q ss_pred             CCCEEEEEEC-CCCCCCCHHHHHHHHHHHHHCCCEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             3410898617-888977089999999999750790317999251369993689999999999973169992699998169
Q 003630          403 VEVWTCVNFS-TRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPD  481 (806)
Q Consensus       403 i~~W~vv~~~-~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~il~~  481 (806)
                      +-.|.++.+. ....+..+++|++.|.+.|+..||.+...+...+......+.+..+....++.    .++++++||+++
T Consensus        37 ~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~vi~~~  112 (392)
T d1yvua2          37 VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKI----KDVDLVIVFLEE  112 (392)
T ss_dssp             EEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTTT----SSCSEEEEEEC-
T ss_pred             CCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCCHHHHHHHHHHHC----CCCCEEEEEECC
T ss_conf             3442478999963106679999999999998629264578867131277511599999998402----677789999768


Q ss_pred             CCC-------C-CC-----------CCCCCCC------CC----------CCCCCCCCEEEECCCCCCCCCCCCCCCEEE
Q ss_conf             988-------8-87-----------7434544------52----------101038500353111014777547999399
Q 003630          482 VSG-------S-YV-----------PRFLVKI------DR----------FASLVGGRNTVLVDAVQKRIPLVTDRPTII  526 (806)
Q Consensus       482 ~~~-------~-Y~-----------~~~~~k~------~~----------l~~KlGG~n~~l~~~~~~~~p~~~~~~tmi  526 (806)
                      ...       + |.           ++||.+.      +.          +++||||+||.+.+.     +   ..+|||
T Consensus       113 ~~~~~~~~~~~~Y~~IK~~~~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~-----~---~~~tmi  184 (392)
T d1yvua2         113 YPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----E---GKVDAF  184 (392)
T ss_dssp             ---------CHHHHHHHHHHHHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----T---TCCSEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC-----C---CCCEEE
T ss_conf             88866555404799999998549966489886661689835899999999999849834688788-----9---997599


Q ss_pred             EEEEEECCCCCCCCCCCEEEEEEEECCCC-CCEEEEEEEECCCCCHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             96743068999999984668998416898-73027899970787002220120017987763121289999999998529
Q 003630          527 FGADVTHPQPWGGTSPSIAAVVASMDWPE-VAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTN  605 (806)
Q Consensus       527 iG~DV~Hp~~~~~~~pSi~a~v~S~d~~~-~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~  605 (806)
                      ||+||+|++++.. .++++|++.+.+ .. ...++.....|..++|.+                .+++.++|..|++.+|
T Consensus       185 IGiDv~h~~~~~~-~~~~v~~~~~~~-~~g~~~~~~~~~~~~~~ee~~----------------~~~~~~~l~~~~~~~~  246 (392)
T d1yvua2         185 VGIDISRITRDGK-TVNAVAFTKIFN-SKGELVRYYLTSYPAFGEKLT----------------EKAIGDVFSLLEKLGF  246 (392)
T ss_dssp             EEECEEECCCSSS-CCCEEEEEEEEC-TTSCEEEEEEEEECSCTTHHH----------------HHHHHHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCC-CCCEEEEEEEEC-CCCCEEEEEEEECCCCCHHHH----------------HHHHHHHHHHHHHHCC
T ss_conf             9999871588898-463899999986-899778999885477607899----------------9999999999999649


Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99944899834889356999999999999999996217999989999995235443477988988988998999761264
Q 003630          606 FKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVV  685 (806)
Q Consensus       606 ~~P~~IiiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvV  685 (806)
                      .+|++|||||||+..       ++|+++|++||..+    .|++++|+|+||||+|||+.           +|+++||++
T Consensus       247 ~~P~rIIi~RdG~~~-------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~-----------~~~~~Gt~v  304 (392)
T d1yvua2         247 KKGSKIVVHRDGRLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSN-----------EKFIKGYFY  304 (392)
T ss_dssp             CTTCEEEEEESSCCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECS-----------CSCCTTEEE
T ss_pred             CCCCEEEEEECCCCC-------HHHHHHHHHHHHHC----CCCEEEEEEEECCCEEECCC-----------CCCCCCCEE
T ss_conf             998669999588773-------79999999999864----99589999981588265678-----------999999877


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             15556898661897213798874478736997248878966799999995402453368854477233399999998641
Q 003630          686 DTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYY  765 (806)
Q Consensus       686 d~~it~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~de~~~~~d~lq~lty~Lc~~y~~~t~~VsiP~P~yyA~~~a~R~r~~  765 (806)
                      .    .+..++||++||.+.|||+||+||+|++||+  +.|+||++||.|||+|+|||++||+|+|+||||++|+|+|.+
T Consensus       305 ~----~~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~  378 (392)
T d1yvua2         305 K----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRG  378 (392)
T ss_dssp             E----BSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTC
T ss_pred             E----CCCCEEEEEECCCCCCCCCCCCEEEEECCCC--CHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHC
T ss_conf             1----7989299997688578777885899988989--989999999997751267189980077999999999997511


Q ss_pred             CCC
Q ss_conf             023
Q 003630          766 IED  768 (806)
Q Consensus       766 ~~~  768 (806)
                      +++
T Consensus       379 ~~p  381 (392)
T d1yvua2         379 IEP  381 (392)
T ss_dssp             SSC
T ss_pred             CCC
T ss_conf             786
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure