Citrus Sinensis ID: 003633

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800------
MISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRLISLGSPEDYERALRQGPRNGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGCPEERRQHSEPHQLRLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYKQQQMHPHSPSSSSSFSTRYSKAVFNFFDFIDEKEEAIKKMFTQCDYPQVHGSSGR
cHHHHcccccccEEEEEccccccccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHccccccEEEEEcccHHHccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEccccccccccEEEEEEccccEEEEEEEEcccccccccccccccccccccccccccEEEEEccccccccccEEEccccccEEEEEccccccccEEEcccccccEEEEEHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHccccEEEEEEEEEccEEEEEEEccccEEccEEEEEEccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccEEEEEcHHHHHHHHHccccEEEEcccccccEEEEEEccccccccccHHHHHccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccHHHHHHHHcccccccccccccc
ccHHHHccccccEEEEEccccccccccccEEEEccccHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccccEEEEEEcccHHHHcccccccHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccccccHcccccccccHHHHHHHHHccEccccEEEEEcccccEccccEEEEEEcccccEEEEEEcccccEEEEcccccccccccccccccccccEEEccccEEccccEEEcccccEEEEEEEcccccEEEEEcccccccEEEEHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHcccccEEEEEEEEEEEcEEEEEccccHHHccEEEEEEccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccEEEEEEHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccEEEEcccHHHHHHHHHccccHHHHHccccHHHHHHHHHcccccccEEEEEEcccHHHHHHcccccEEEEcccccccccEEEcccccccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
misevanglkvplvsfaatdptlsalqfpyfirstqsdSQQMAAMADLIDFYGWKEVIAIYvdddygrngISALSNMLEKNMAkvsyklplpvqfnqHDITVLLnnskplgprvyvvhvspdpglriFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVglrqhtpdsipkkaFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFInehnitfsashelpdskaTRVQLEQLKVFDGGTFLLRKLLQTnftglsgqvqfnqdrnivsrgydvinidkmeihrvgywfdgsgfsvlppetlkgknvshsqldwklqnitwpggktetprgwviadnarplrigvprrasfvgfvteehdshkvQGYCIDILLEALklvpydvpykfelfgdglsnpsydGLVKMVANDVfdaavgdiaivtnrtkivdfsqpyistglvivapinnhkasawvflkPFTVEMWCVTAASFVMIAVVIWILEHrvnddfrgpprrQIATMFLFSFSTLFKTNQEATVSSLGRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESlitndwpigyqvgsfAYSYLSDSLRIQKSRlislgspeDYERALrqgprnggvaaivdELPYVQLFLsnqtdfgiigqpftrsgwgfafqrdsplavGMSTAILKLSENGMLQKLHEKwfckegcpeerrqhsephqlrLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYkqqqmhphspsssssfstRYSKAVFNFFDFIDEKEEAIKKMFtqcdypqvhgssgr
MISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITfsashelpdsKATRVQLEQLKVFDGGTFLLRKLLQTNftglsgqvqfnqdrnivSRGYDVINIDKMEIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLdwklqnitwpggktetprgwviadnarplrigvpRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTnrtkivdfsqPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRLISLGSPEDYERALRQGPRNGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGCPEERRQHSEPHQLRLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYKQqqmhphspsssssfSTRYSKAVFNFFDFIDEKEEAIKKMFtqcdypqvhgssgr
MISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGRfvmvvwlfllmvITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRLISLGSPEDYERALRQGPRNGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGCPEERRQHSEPHQLRLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYKQQQMhphspsssssfsTRYSKAVFNFFDFIDEKEEAIKKMFTQCDYPQVHGSSGR
*******GLKVPLVSFAATDPTLSALQFPYFIRST*****QMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHEL***KATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRLISL***************NGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGC***********QLRLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYK******************YSKAVFNFFDFIDEKEEAIKKMFTQCDY*********
MISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAF**************AGLNTYGLYAYDTVWAVARSIDKFINEHNI***********************FDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPP****************LQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRLISL****************GGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWF*********************SFWGLYLLCGTITFTAFLVFLLRMVCQYVR*********************************************************
MISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRLISLGSPEDYERALRQGPRNGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGC*********PHQLRLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYK****************TRYSKAVFNFFDFIDEKEEAIKKMFTQCDYPQVHGSSGR
MISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPPETL***********WKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRLISLGSPEDYERALRQGPRNGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGC**********HQLRLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYK****************TRYSKAVFNFFDFIDEKEEAIK*****************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRLISLGSPEDYERALRQGPRNGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGCPEERRQHSEPHQLRLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYKQQQMHPHSPSSSSSFSTRYSKAVFNFFDFIDEKEEAIKKMFTQCDYPQVHGSSGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query806 2.2.26 [Sep-21-2011]
Q9SDQ4921 Glutamate receptor 3.7 OS yes no 0.973 0.852 0.57 0.0
Q9C8E7933 Glutamate receptor 3.3 OS no no 0.960 0.829 0.496 0.0
Q8GXJ4959 Glutamate receptor 3.4 OS no no 0.976 0.820 0.488 0.0
Q9SW97953 Glutamate receptor 3.5 OS no no 0.981 0.830 0.489 0.0
Q93YT1912 Glutamate receptor 3.2 OS no no 0.966 0.854 0.491 0.0
Q84W41903 Glutamate receptor 3.6 OS no no 0.959 0.856 0.469 0.0
Q7XJL2921 Glutamate receptor 3.1 OS no no 0.965 0.844 0.478 0.0
Q7XP59938 Glutamate receptor 3.1 OS no no 0.977 0.840 0.456 0.0
Q8LGN0952 Glutamate receptor 2.7 OS no no 0.926 0.784 0.355 1e-125
Q9LFN5918 Glutamate receptor 2.5 OS no no 0.911 0.800 0.342 1e-124
>sp|Q9SDQ4|GLR37_ARATH Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2 Back     alignment and function desciption
 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/800 (57%), Positives = 607/800 (75%), Gaps = 15/800 (1%)

Query: 2   ISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIY 61
           IS++A GL  PLVSFAATDPTLSALQFP+F+R+T +D+ QM+A+ DLI+FYGWKEVI++Y
Sbjct: 111 ISDIAKGLHFPLVSFAATDPTLSALQFPFFLRTTPNDAHQMSALVDLINFYGWKEVISVY 170

Query: 62  VDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSP 121
            DD+ GRNG+SAL + L K  +++SYK+PL V  ++  +T  LN SK +GPRVY++H  P
Sbjct: 171 SDDELGRNGVSALDDELYKKRSRISYKVPLSVHSDEKFLTNALNKSKSIGPRVYILHFGP 230

Query: 122 DPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSI 181
           DP LRIF  AQKLQMMT+ YVWLATDWLS TL+S S  ++ +L+ L+GVVGLRQH P+S+
Sbjct: 231 DPLLRIFDIAQKLQMMTHEYVWLATDWLSVTLDSLS--DKGTLKRLEGVVGLRQHIPESV 288

Query: 182 PKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEH-NITFSASHELPD 240
             + F  +          +  +N Y L+AYDTVW +A  I++ +NE  NITFS S +L  
Sbjct: 289 KMEHFTHKLQS-------NRSMNAYALHAYDTVWMIAHGIEELLNEGINITFSYSEKLLH 341

Query: 241 SKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIH 300
           ++ T++ LE++K F+ G  LL KLL+ NFTG++GQVQF   RN++   Y++IN++K ++H
Sbjct: 342 ARGTKLHLEKIKFFNSGELLLEKLLKVNFTGIAGQVQFGSGRNVIGCDYEIINVNKTDVH 401

Query: 301 RVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRI 360
            VG+W    GFSV+ P+T   +  +    D KL +ITWPGG  E PRGWVIAD+A PL+I
Sbjct: 402 TVGFWSKNGGFSVVAPKTRHSQKKTSFVSDEKLGDITWPGGGREKPRGWVIADSADPLKI 461

Query: 361 GVPRRASFVGFVTEEHDS-HKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGL 419
            VPRR SFV FVTEE +S H++QG+CID+ +EALK VPY VPY FE FG+G S+P+Y+ L
Sbjct: 462 VVPRRVSFVEFVTEEKNSSHRIQGFCIDVFIEALKFVPYSVPYIFEPFGNGHSSPNYNHL 521

Query: 420 VKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVE 479
           ++MV + V+DAAVGDIAIV +R+K+VDFSQPY STGLV+V P N+  A+ W+FL+PFT  
Sbjct: 522 IQMVTDGVYDAAVGDIAIVPSRSKLVDFSQPYASTGLVVVIPANDDNAT-WIFLRPFTSR 580

Query: 480 MWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGR 539
           +WCV   SF++IAVVIWILEHR+N+DFRGPPRRQ++TM LFSFSTLFK NQE T+S+L R
Sbjct: 581 LWCVVLVSFLVIAVVIWILEHRINEDFRGPPRRQLSTMLLFSFSTLFKRNQEDTISNLAR 640

Query: 540 FVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLS 599
            VM+VWLFLLMV+T+SYTA+L+SILTVQQL +++ GI+SL  ++ PIGYQ G+F   YL+
Sbjct: 641 LVMIVWLFLLMVLTASYTANLTSILTVQQLPSAITGIDSLRASEVPIGYQAGTFTLEYLT 700

Query: 600 DSLRIQKSRLISLGSPEDYERALRQGPRN-GGVAAIVDELPYVQLFLSNQTDFGIIGQPF 658
            SL + +SRL+ L S E+YE+AL+ GP N GGVAAIVDELPY++LFL+ +T F I+G+PF
Sbjct: 701 YSLGMARSRLVPLDSTEEYEKALKLGPTNWGGVAAIVDELPYIELFLAERTGFKIVGEPF 760

Query: 659 TRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGCPEERRQHSEPHQLRL 718
              GWGFAF+RDSPLA+ MSTAILKLSE   LQ++ +KW CK  C  +   + EP+QL L
Sbjct: 761 MHRGWGFAFKRDSPLAIDMSTAILKLSETRKLQEIRKKWLCKTNCAGKSNWNPEPNQLHL 820

Query: 719 ISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYKQQQMHPHSPSS--SSSFSTRYSKAVFN 776
            SF GLYL+C  IT +AFLVF+LRM+ Q+VRY++ +     P +  S+S + R  + VF+
Sbjct: 821 KSFKGLYLVCIAITVSAFLVFVLRMIRQFVRYRRMERTSSMPRASWSASPTLRLRELVFD 880

Query: 777 FFDFIDEKEEAIKKMFTQCD 796
           F +F+DEKEEAIK+MF + D
Sbjct: 881 FVEFVDEKEEAIKRMFRRSD 900
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C8E7|GLR33_ARATH Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXJ4|GLR34_ARATH Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SW97|GLR35_ARATH Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2 Back     alignment and function description
>sp|Q93YT1|GLR32_ARATH Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2 Back     alignment and function description
>sp|Q84W41|GLR36_ARATH Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1 Back     alignment and function description
>sp|Q7XJL2|GLR31_ARATH Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2 Back     alignment and function description
>sp|Q7XP59|GLR31_ORYSJ Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1 Back     alignment and function description
>sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3 Back     alignment and function description
>sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query806
255566389 921 glutamate receptor 3 plant, putative [Ri 0.987 0.864 0.721 0.0
297739291838 unnamed protein product [Vitis vinifera] 0.988 0.951 0.702 0.0
225447292 909 PREDICTED: glutamate receptor 3.7 [Vitis 0.988 0.876 0.702 0.0
224064996861 glutamate-gated kainate-type ion channel 0.990 0.926 0.701 0.0
356547081 909 PREDICTED: glutamate receptor 3.7-like [ 0.988 0.876 0.656 0.0
357453437 914 Glutamate receptor 3.7 [Medicago truncat 0.985 0.868 0.653 0.0
449468354866 PREDICTED: glutamate receptor 3.7-like [ 0.987 0.919 0.665 0.0
356543714 909 PREDICTED: glutamate receptor 3.7-like [ 0.985 0.873 0.657 0.0
357933575866 glutamate receptor 3.1 [Solanum lycopers 0.988 0.920 0.641 0.0
449515639882 PREDICTED: LOW QUALITY PROTEIN: glutamat 0.960 0.877 0.614 0.0
>gi|255566389|ref|XP_002524180.1| glutamate receptor 3 plant, putative [Ricinus communis] gi|223536549|gb|EEF38195.1| glutamate receptor 3 plant, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1187 bits (3072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/800 (72%), Positives = 674/800 (84%), Gaps = 4/800 (0%)

Query: 1   MISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAI 60
           MIS+ ANGL+VPL+S+AATDPTLSALQFP+F+R+TQSDS QMAAMA+L+DFYGWKEVI I
Sbjct: 115 MISQFANGLQVPLISYAATDPTLSALQFPFFVRTTQSDSYQMAAMAELVDFYGWKEVIGI 174

Query: 61  YVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVS 120
           YVDDD GRNGI+A  + LEK MAK +YKL L V F++ +IT LL  SK LGPRVYVVHV+
Sbjct: 175 YVDDDPGRNGINAFDDELEKKMAK-TYKLQLSVNFDEAEITGLLKKSKSLGPRVYVVHVN 233

Query: 121 PDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDS 180
           PDP +RIFT A+KLQMMT+NYVW ATDWLSAT++SFS++N+T L +L GVV LRQH P+S
Sbjct: 234 PDPRMRIFTVAKKLQMMTDNYVWFATDWLSATVDSFSRINRTELSVLHGVVALRQHIPES 293

Query: 181 IPKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINE-HNITFSASHELP 239
             K+AF+SRW  MQQKGLVS+ LNTYGL AYDTVWAVA +ID FINE  NITF  +HEL 
Sbjct: 294 SQKRAFVSRWREMQQKGLVSSELNTYGLQAYDTVWAVAYAIDNFINEFKNITFPLNHELL 353

Query: 240 DSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEI 299
           + K + +QL +LK+F+GG  LL K+LQ NFTGLSG +Q NQDRNI S GYDVINI    +
Sbjct: 354 EMKTSELQLRELKIFNGGNDLLNKILQLNFTGLSGHIQVNQDRNIESGGYDVINIVHTSV 413

Query: 300 HRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLR 359
             VGYW   SGFS+LP ET +G+  ++S +D KLQNITWPGGK E PRGW IAD+ RPLR
Sbjct: 414 RTVGYWSSSSGFSLLPTETHQGEQTNYSHVDQKLQNITWPGGKMEKPRGWEIADDERPLR 473

Query: 360 IGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGL 419
           IGVPRRASFV FVTE + SHK++GYCID+ LEA KL+PY VPY+FE FGDG SNPSY+ L
Sbjct: 474 IGVPRRASFVDFVTEVNQSHKIEGYCIDLFLEARKLIPYYVPYRFEPFGDGQSNPSYNEL 533

Query: 420 VKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVE 479
           V+MVA DV DAAVGDIAIVTNRTKIVDFSQPY ++GLVI+API N K+SAWVFLKPFTVE
Sbjct: 534 VRMVAEDVLDAAVGDIAIVTNRTKIVDFSQPYAASGLVILAPIRNSKSSAWVFLKPFTVE 593

Query: 480 MWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGR 539
           MWCVTAASF+MIAVVIWILEHRVND+FRGPPRRQI TMF+FSFSTLFKTNQE T+S L R
Sbjct: 594 MWCVTAASFLMIAVVIWILEHRVNDEFRGPPRRQIVTMFMFSFSTLFKTNQETTISPLAR 653

Query: 540 FVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLS 599
            VMVVWLF+LMVIT+SYTASL+SILTV+QLS+ + GI+SLI + WPIGYQVGSFAY YL 
Sbjct: 654 MVMVVWLFVLMVITASYTASLTSILTVEQLSSPITGIDSLIASKWPIGYQVGSFAYEYLY 713

Query: 600 DSLRIQKSRLISLGSPEDYERALRQGPRN-GGVAAIVDELPYVQLFLSNQTDFGIIGQPF 658
           +SL I +SRL+ LG+PE+YERALR GP+N GGVAA+VDELPYV+LFL+   DFGIIGQPF
Sbjct: 714 ESLYISRSRLVPLGTPEEYERALRLGPQNVGGVAAVVDELPYVELFLAKHGDFGIIGQPF 773

Query: 659 TRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGCPEERRQHSEPHQLRL 718
           TR GWGFAFQRDSPLA+ MSTAILKLSE G+LQK+HEKWFCK+GC  E+RQ SEP+QLRL
Sbjct: 774 TRGGWGFAFQRDSPLALDMSTAILKLSETGVLQKIHEKWFCKKGCAGEKRQKSEPNQLRL 833

Query: 719 ISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYKQQQMHPHSPSSSSSFSTRYSKAVFNFF 778
           ISFWGLYLLCG +T  A L+FLLR V Q+V YK++QM    PS   S +TR S+ +F+FF
Sbjct: 834 ISFWGLYLLCGGVTLAALLLFLLRAVRQFVHYKRRQMQQVPPSVILS-TTRCSQIIFHFF 892

Query: 779 DFIDEKEEAIKKMFTQCDYP 798
           DFID+KEEAIKKMF QCD+P
Sbjct: 893 DFIDKKEEAIKKMFMQCDHP 912

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739291|emb|CBI28942.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447292|ref|XP_002273713.1| PREDICTED: glutamate receptor 3.7 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224064996|ref|XP_002301626.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222843352|gb|EEE80899.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356547081|ref|XP_003541946.1| PREDICTED: glutamate receptor 3.7-like [Glycine max] Back     alignment and taxonomy information
>gi|357453437|ref|XP_003596995.1| Glutamate receptor 3.7 [Medicago truncatula] gi|355486043|gb|AES67246.1| Glutamate receptor 3.7 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449468354|ref|XP_004151886.1| PREDICTED: glutamate receptor 3.7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356543714|ref|XP_003540305.1| PREDICTED: glutamate receptor 3.7-like [Glycine max] Back     alignment and taxonomy information
>gi|357933575|dbj|BAL15054.1| glutamate receptor 3.1 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449515639|ref|XP_004164856.1| PREDICTED: LOW QUALITY PROTEIN: glutamate receptor 3.7-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query806
TAIR|locus:2062586921 GLR5 "glutamate receptor 5" [A 0.973 0.852 0.555 8.2e-241
TAIR|locus:2206095933 GLR3.3 "glutamate receptor 3.3 0.970 0.838 0.488 1.3e-201
TAIR|locus:2207165959 GLR3.4 "AT1G05200" [Arabidopsi 0.978 0.822 0.480 8.4e-200
TAIR|locus:2122128912 GLUR2 "glutamate receptor 2" [ 0.966 0.854 0.488 7.6e-199
TAIR|locus:2081805903 GLR3.6 "glutamate receptor 3.6 0.959 0.856 0.465 1.2e-193
TAIR|locus:2066107952 GLR2.7 "glutamate receptor 2.7 0.893 0.756 0.353 3.1e-115
TAIR|locus:2047256920 GLR2.2 "glutamate receptor 2.2 0.878 0.769 0.332 2.9e-110
TAIR|locus:2181196901 GLR2.1 "glutamate receptor 2.1 0.893 0.799 0.339 4.8e-110
TAIR|locus:2066086947 GLR2.8 "glutamate receptor 2.8 0.878 0.747 0.347 9e-109
TAIR|locus:2047251895 GLR2.3 "glutamate receptor 2.3 0.879 0.792 0.321 9.5e-105
TAIR|locus:2062586 GLR5 "glutamate receptor 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2321 (822.1 bits), Expect = 8.2e-241, P = 8.2e-241
 Identities = 444/800 (55%), Positives = 592/800 (74%)

Query:     2 ISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIY 61
             IS++A GL  PLVSFAATDPTLSALQFP+F+R+T +D+ QM+A+ DLI+FYGWKEVI++Y
Sbjct:   111 ISDIAKGLHFPLVSFAATDPTLSALQFPFFLRTTPNDAHQMSALVDLINFYGWKEVISVY 170

Query:    62 VDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSP 121
              DD+ GRNG+SAL + L K  +++SYK+PL V  ++  +T  LN SK +GPRVY++H  P
Sbjct:   171 SDDELGRNGVSALDDELYKKRSRISYKVPLSVHSDEKFLTNALNKSKSIGPRVYILHFGP 230

Query:   122 DPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSI 181
             DP LRIF  AQKLQMMT+ YVWLATDWLS TL+S S  ++ +L+ L+GVVGLRQH P+S+
Sbjct:   231 DPLLRIFDIAQKLQMMTHEYVWLATDWLSVTLDSLS--DKGTLKRLEGVVGLRQHIPESV 288

Query:   182 PKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEH-NITFSASHELPD 240
               + F  +   +Q     +  +N Y L+AYDTVW +A  I++ +NE  NITFS S +L  
Sbjct:   289 KMEHFTHK---LQS----NRSMNAYALHAYDTVWMIAHGIEELLNEGINITFSYSEKLLH 341

Query:   241 SKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIH 300
             ++ T++ LE++K F+ G  LL KLL+ NFTG++GQVQF   RN++   Y++IN++K ++H
Sbjct:   342 ARGTKLHLEKIKFFNSGELLLEKLLKVNFTGIAGQVQFGSGRNVIGCDYEIINVNKTDVH 401

Query:   301 RVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRI 360
              VG+W    GFSV+ P+T   +  +    D KL +ITWPGG  E PRGWVIAD+A PL+I
Sbjct:   402 TVGFWSKNGGFSVVAPKTRHSQKKTSFVSDEKLGDITWPGGGREKPRGWVIADSADPLKI 461

Query:   361 GVPRRASFVGFVTEE-HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGL 419
              VPRR SFV FVTEE + SH++QG+CID+ +EALK VPY VPY FE FG+G S+P+Y+ L
Sbjct:   462 VVPRRVSFVEFVTEEKNSSHRIQGFCIDVFIEALKFVPYSVPYIFEPFGNGHSSPNYNHL 521

Query:   420 VKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVE 479
             ++MV + V+DAAVGDIAIV +R+K+VDFSQPY STGLV+V P N+  A+ W+FL+PFT  
Sbjct:   522 IQMVTDGVYDAAVGDIAIVPSRSKLVDFSQPYASTGLVVVIPANDDNAT-WIFLRPFTSR 580

Query:   480 MWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTNQEATVSSLGR 539
             +WCV   SF++IAVVIWILEHR+N+DFRGPPRRQ++TM LFSFSTLFK NQE T+S+L R
Sbjct:   581 LWCVVLVSFLVIAVVIWILEHRINEDFRGPPRRQLSTMLLFSFSTLFKRNQEDTISNLAR 640

Query:   540 XXXXXXXXXXXXITSSYTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLS 599
                         +T+SYTA+L+SILTVQQL +++ GI+SL  ++ PIGYQ G+F   YL+
Sbjct:   641 LVMIVWLFLLMVLTASYTANLTSILTVQQLPSAITGIDSLRASEVPIGYQAGTFTLEYLT 700

Query:   600 DSLRIQKSRLISLGSPEDYERALRQGPRN-GGVAAIVDELPYVQLFLSNQTDFGIIGQPF 658
              SL + +SRL+ L S E+YE+AL+ GP N GGVAAIVDELPY++LFL+ +T F I+G+PF
Sbjct:   701 YSLGMARSRLVPLDSTEEYEKALKLGPTNWGGVAAIVDELPYIELFLAERTGFKIVGEPF 760

Query:   659 TRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGCPEERRQHSEPHQLRL 718
                GWGFAF+RDSPLA+ MSTAILKLSE   LQ++ +KW CK  C  +   + EP+QL L
Sbjct:   761 MHRGWGFAFKRDSPLAIDMSTAILKLSETRKLQEIRKKWLCKTNCAGKSNWNPEPNQLHL 820

Query:   719 ISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYKQQQMXXXX--XXXXXXXXTRYSKAVFN 776
              SF GLYL+C  IT +AFLVF+LRM+ Q+VRY++ +                R  + VF+
Sbjct:   821 KSFKGLYLVCIAITVSAFLVFVLRMIRQFVRYRRMERTSSMPRASWSASPTLRLRELVFD 880

Query:   777 FFDFIDEKEEAIKKMFTQCD 796
             F +F+DEKEEAIK+MF + D
Sbjct:   881 FVEFVDEKEEAIKRMFRRSD 900
GO:0004965 "G-protein coupled GABA receptor activity" evidence=IEA
GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA
GO:0005215 "transporter activity" evidence=IEA
GO:0005217 "intracellular ligand-gated ion channel activity" evidence=ISS
GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0006874 "cellular calcium ion homeostasis" evidence=NAS
GO:0009416 "response to light stimulus" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2206095 GLR3.3 "glutamate receptor 3.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081805 GLR3.6 "glutamate receptor 3.6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SDQ4GLR37_ARATHNo assigned EC number0.570.97390.8523yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query806
cd06366350 cd06366, PBP1_GABAb_receptor, Ligand-binding domai 2e-86
pfam00060268 pfam00060, Lig_chan, Ligand-gated ion channel 1e-65
pfam01094343 pfam01094, ANF_receptor, Receptor family ligand bi 7e-56
cd06350348 cd06350, PBP1_GPCR_family_C_like, Ligand-binding d 4e-51
cd06269298 cd06269, PBP1_glutamate_receptors_like, Family C G 2e-36
smart00079133 smart00079, PBPe, Eukaryotic homologues of bacteri 5e-35
cd04509299 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family 6e-22
cd06268298 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas 2e-19
cd06379377 cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/i 9e-19
COG0683366 COG0683, LivK, ABC-type branched-chain amino acid 2e-18
cd06363410 cd06363, PBP1_Taste_receptor, Ligand-binding domai 1e-15
cd06362452 cd06362, PBP1_mGluR, Ligand binding domain of the 2e-15
cd06367362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isole 4e-14
cd06361403 cd06361, PBP1_GPC6A_like, Ligand-binding domain of 2e-12
cd06364510 cd06364, PBP1_CaSR, Ligand-binding domain of the C 3e-11
cd06380382 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isole 5e-10
cd06375458 cd06375, PBP1_mGluR_groupII, Ligand binding domain 8e-10
cd01391269 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1e-09
cd06368324 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc 1e-09
cd06351328 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci 2e-09
cd06374472 cd06374, PBP1_mGluR_groupI, Ligand binding domain 2e-09
pfam00497220 pfam00497, SBP_bac_3, Bacterial extracellular solu 4e-09
pfam00497220 pfam00497, SBP_bac_3, Bacterial extracellular solu 1e-08
pfam13458343 pfam13458, Peripla_BP_6, Periplasmic binding prote 2e-08
cd00134218 cd00134, PBPb, Bacterial periplasmic transport sys 2e-07
smart00062219 smart00062, PBPb, Bacterial periplasmic substrate- 3e-07
cd06346312 cd06346, PBP1_ABC_ligand_binding_like_11, Type I p 6e-07
PRK11260266 PRK11260, PRK11260, cystine transporter subunit; P 5e-06
cd06376463 cd06376, PBP1_mGluR_groupIII, Ligand-binding domai 6e-06
COG0834275 COG0834, HisJ, ABC-type amino acid transport/signa 6e-06
COG0834275 COG0834, HisJ, ABC-type amino acid transport/signa 9e-06
cd06393384 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal le 2e-05
cd06382327 cd06382, PBP1_iGluR_Kainate, N-terminal leucine/is 5e-05
cd06352389 cd06352, PBP1_NPR_GC_like, Ligand-binding domain o 8e-05
cd06333312 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasm 9e-05
PRK09495247 PRK09495, glnH, glutamine ABC transporter periplas 3e-04
cd06365469 cd06365, PBP1_Pheromone_receptor, Ligand-binding d 0.004
cd06342334 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic l 0.004
>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information 
 Score =  277 bits (711), Expect = 2e-86
 Identities = 116/317 (36%), Positives = 156/317 (49%), Gaps = 53/317 (16%)

Query: 1   MISEVANGLKVPLVSFAATDPTLS-ALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIA 59
            ++EVAN   VP++SFAAT P+LS  LQ+PYF R+T SDS Q  A+A L+  +GW+ V  
Sbjct: 81  FVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGWRRVAT 140

Query: 60  IYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHV 119
           IY DDDYG  G+  L + L++   ++SY+   P   N  DIT  L   K    RV VVH 
Sbjct: 141 IYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHF 200

Query: 120 SPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATL-ESFSKMNQTSLRILQGVVGLRQHTP 178
           SPD   R+F  A KL MM   YVW+ TDWLS+    S    ++  L  +QGV+G+R + P
Sbjct: 201 SPDLARRVFCEAYKLGMMGKGYVWILTDWLSSNWWSSSDCTDEEMLEAMQGVIGVRSYVP 260

Query: 179 D-SIPKKAFLSRWSGM-QQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASH 236
           + S+  + F SRW      +       + Y LYAYD VWA                    
Sbjct: 261 NSSMTLQEFTSRWRKRFGNENPELTEPSIYALYAYDAVWA-------------------- 300

Query: 237 ELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDK 296
                                         TNF GLSG VQF+  R + S  +++INI  
Sbjct: 301 -----------------------------STNFNGLSGPVQFDGGRRLASPAFEIINIIG 331

Query: 297 MEIHRVGYWFDGSGFSV 313
               ++G+W   SG SV
Sbjct: 332 KGYRKIGFWSSESGLSV 348

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel Back     alignment and domain information
>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region Back     alignment and domain information
>gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>gnl|CDD|197504 smart00079, PBPe, Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily Back     alignment and domain information
>gnl|CDD|107374 cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor Back     alignment and domain information
>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107358 cd06363, PBP1_Taste_receptor, Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>gnl|CDD|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information
>gnl|CDD|107362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information
>gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>gnl|CDD|107370 cd06375, PBP1_mGluR_groupII, Ligand binding domain of the group II metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>gnl|CDD|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3 Back     alignment and domain information
>gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3 Back     alignment and domain information
>gnl|CDD|222144 pfam13458, Peripla_BP_6, Periplasmic binding protein Back     alignment and domain information
>gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>gnl|CDD|107341 cd06346, PBP1_ABC_ligand_binding_like_11, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>gnl|CDD|183061 PRK11260, PRK11260, cystine transporter subunit; Provisional Back     alignment and domain information
>gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group III metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|223904 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|223904 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|107388 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor Back     alignment and domain information
>gnl|CDD|107377 cd06382, PBP1_iGluR_Kainate, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors Back     alignment and domain information
>gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids Back     alignment and domain information
>gnl|CDD|236540 PRK09495, glnH, glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>gnl|CDD|107360 cd06365, PBP1_Pheromone_receptor, Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>gnl|CDD|107337 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 806
KOG1054897 consensus Glutamate-gated AMPA-type ion channel re 100.0
KOG4440993 consensus NMDA selective glutamate-gated ion chann 100.0
KOG1053 1258 consensus Glutamate-gated NMDA-type ion channel re 100.0
KOG1052656 consensus Glutamate-gated kainate-type ion channel 100.0
cd06390364 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin 100.0
cd06392400 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v 100.0
cd06387372 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin 100.0
cd06391400 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v 100.0
cd06379377 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/ 100.0
cd06365469 PBP1_Pheromone_receptor Ligand-binding domain of t 100.0
cd06367362 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali 100.0
cd06375458 PBP1_mGluR_groupII Ligand binding domain of the gr 100.0
cd06374472 PBP1_mGluR_groupI Ligand binding domain of the gro 100.0
cd06376463 PBP1_mGluR_groupIII Ligand-binding domain of the g 100.0
cd06361403 PBP1_GPC6A_like Ligand-binding domain of the promi 100.0
cd06393384 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol 100.0
cd06389370 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin 100.0
cd06362452 PBP1_mGluR Ligand binding domain of the metabotrop 100.0
cd06388371 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin 100.0
cd06364510 PBP1_CaSR Ligand-binding domain of the CaSR calciu 100.0
cd06380382 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali 100.0
cd06378362 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/ 100.0
cd06386387 PBP1_NPR_C_like Ligand-binding domain of type C na 100.0
KOG1056878 consensus Glutamate-gated metabotropic ion channel 100.0
cd06385405 PBP1_NPR_A Ligand-binding domain of type A natriur 100.0
cd06384399 PBP1_NPR_B Ligand-binding domain of type B natriur 100.0
cd06363410 PBP1_Taste_receptor Ligand-binding domain of the T 100.0
cd06373396 PBP1_NPR_like Ligand binding domain of natriuretic 100.0
cd06371382 PBP1_sensory_GC_DEF_like Ligand-binding domain of 100.0
cd06370404 PBP1_Speract_GC_like Ligand-binding domain of memb 100.0
cd06372391 PBP1_GC_G_like Ligand-binding domain of membrane g 100.0
cd06366350 PBP1_GABAb_receptor Ligand-binding domain of GABAb 100.0
PF01094348 ANF_receptor: Receptor family ligand binding regio 99.98
cd06394333 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu 99.97
cd06352389 PBP1_NPR_GC_like Ligand-binding domain of membrane 99.97
cd06382327 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v 99.97
cd06381363 PBP1_iGluR_delta_like N-terminal leucine/isoleucin 99.96
cd06383368 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine 99.96
cd06368324 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu 99.95
cd06350348 PBP1_GPCR_family_C_like Ligand-binding domain of m 99.94
cd06342334 PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind 99.94
PRK15404369 leucine ABC transporter subunit substrate-binding 99.93
cd06338345 PBP1_ABC_ligand_binding_like_5 Type I periplasmic 99.93
cd06351328 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc 99.92
cd06345344 PBP1_ABC_ligand_binding_like_10 Type I periplasmic 99.92
cd06346312 PBP1_ABC_ligand_binding_like_11 Type I periplasmic 99.92
cd06377382 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/ 99.92
cd06348344 PBP1_ABC_ligand_binding_like_13 Type I periplasmic 99.91
KOG1055865 consensus GABA-B ion channel receptor subunit GABA 99.91
cd06340347 PBP1_ABC_ligand_binding_like_6 Type I periplasmic 99.9
cd06360336 PBP1_alkylbenzenes_like Type I periplasmic binding 99.9
cd06344332 PBP1_ABC_ligand_binding_like_9 Type I periplasmic 99.9
cd06347334 PBP1_ABC_ligand_binding_like_12 Type I periplasmic 99.89
cd06355348 PBP1_FmdD_like Periplasmic component (FmdD) of an 99.89
cd06336347 PBP1_ABC_ligand_binding_like_3 Type I periplasmic 99.88
COG0683366 LivK ABC-type branched-chain amino acid transport 99.88
cd06327334 PBP1_SBP_like_1 Periplasmic solute-binding domain 99.88
cd06329342 PBP1_SBP_like_3 Periplasmic solute-binding domain 99.88
cd06343362 PBP1_ABC_ligand_binding_like_8 Type I periplasmic 99.88
cd06349340 PBP1_ABC_ligand_binding_like_14 Type I periplasmic 99.88
cd06359333 PBP1_Nba_like Type I periplasmic binding component 99.88
PRK10797302 glutamate and aspartate transporter subunit; Provi 99.88
cd06330346 PBP1_Arsenic_SBP_like Periplasmic solute-binding d 99.87
PRK09495247 glnH glutamine ABC transporter periplasmic protein 99.87
cd06331333 PBP1_AmiC_like Type I periplasmic components of am 99.87
cd06332333 PBP1_aromatic_compounds_like Type I periplasmic bi 99.86
TIGR03669374 urea_ABC_arch urea ABC transporter, substrate-bind 99.86
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 99.85
cd06357360 PBP1_AmiC Periplasmic binding domain of amidase (A 99.85
TIGR03407359 urea_ABC_UrtA urea ABC transporter, urea binding p 99.85
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 99.85
cd06328333 PBP1_SBP_like_2 Periplasmic solute-binding domain 99.84
PRK15010260 ABC transporter lysine/arginine/ornithine binding 99.84
cd06269298 PBP1_glutamate_receptors_like Family C G-protein c 99.84
PF13458343 Peripla_BP_6: Periplasmic binding protein; PDB: 4E 99.84
PRK11260266 cystine transporter subunit; Provisional 99.84
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 99.83
cd06337357 PBP1_ABC_ligand_binding_like_4 Type I periplasmic 99.83
PRK15007243 putative ABC transporter arginine-biding protein; 99.83
cd06334351 PBP1_ABC_ligand_binding_like_1 Type I periplasmic 99.83
cd06335347 PBP1_ABC_ligand_binding_like_2 Type I periplasmic 99.83
cd06358333 PBP1_NHase Type I periplasmic-binding protein of t 99.83
PRK15437259 histidine ABC transporter substrate-binding protei 99.82
cd06356334 PBP1_Amide_Urea_BP_like Periplasmic component (Fmd 99.81
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 99.81
cd06369380 PBP1_GC_C_enterotoxin_receptor Ligand-binding doma 99.79
cd06339336 PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin 99.79
PRK10859 482 membrane-bound lytic transglycosylase F; Provision 99.78
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 99.74
TIGR03863347 PQQ_ABC_bind ABC transporter, substrate binding pr 99.73
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.73
cd06326336 PBP1_STKc_like Type I periplasmic binding domain o 99.72
TIGR03870246 ABC_MoxJ methanol oxidation system protein MoxJ. T 99.71
TIGR02285268 conserved hypothetical protein. Members of this fa 99.7
cd04509299 PBP1_ABC_transporter_GCPR_C_like Family C of G-pro 99.69
COG0834275 HisJ ABC-type amino acid transport/signal transduc 99.69
cd00134218 PBPb Bacterial periplasmic transport systems use m 99.68
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 99.67
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.67
cd06341341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic 99.64
cd06333312 PBP1_ABC-type_HAAT_like Type I periplasmic binding 99.64
TIGR03871232 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa 99.64
cd06268298 PBP1_ABC_transporter_LIVBP_like Periplasmic bindin 99.6
PF13433363 Peripla_BP_5: Periplasmic binding protein domain; 99.52
smart00079134 PBPe Eukaryotic homologues of bacterial periplasmi 99.41
COG4623 473 Predicted soluble lytic transglycosylase fused to 99.3
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 98.93
cd01391269 Periplasmic_Binding_Protein_Type_1 Type 1 periplas 98.88
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 98.84
PF1061365 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- 98.71
TIGR03431288 PhnD phosphonate ABC transporter, periplasmic phos 98.15
PF04348536 LppC: LppC putative lipoprotein; InterPro: IPR0074 97.86
PRK11553314 alkanesulfonate transporter substrate-binding subu 97.28
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 97.17
cd01537264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 97.1
cd01536267 PBP1_ABC_sugar_binding_like Periplasmic sugar-bind 96.99
cd06267264 PBP1_LacI_sugar_binding_like Ligand binding domain 96.81
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 96.5
PF13379252 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ 96.1
cd06282266 PBP1_GntR_like_2 Ligand-binding domain of putative 95.92
TIGR03427328 ABC_peri_uca ABC transporter periplasmic binding p 95.85
cd06300272 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi 95.81
cd06273268 PBP1_GntR_like_1 This group includes the ligand-bi 95.75
COG3107604 LppC Putative lipoprotein [General function predic 95.5
cd06325281 PBP1_ABC_uncharacterized_transporter Type I peripl 95.14
cd06320275 PBP1_allose_binding Periplasmic allose-binding dom 94.94
cd08468202 PBP2_Pa0477 The C-terminal substrate biniding doma 94.89
cd05466197 PBP2_LTTR_substrate The substrate binding domain o 94.82
PF09084216 NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent 94.78
COG3221299 PhnD ABC-type phosphate/phosphonate transport syst 94.7
TIGR01481329 ccpA catabolite control protein A. Catabolite cont 94.67
cd06298268 PBP1_CcpA_like Ligand-binding domain of the catabo 94.63
cd06323268 PBP1_ribose_binding Periplasmic sugar-binding doma 94.52
cd08459201 PBP2_DntR_NahR_LinR_like The C-terminal substrate 94.42
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 94.4
cd06319277 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b 94.4
cd01545270 PBP1_SalR Ligand-binding domain of DNA transcripti 94.33
cd06317275 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi 94.23
cd08421198 PBP2_LTTR_like_1 The C-terminal substrate binding 94.11
cd06295275 PBP1_CelR Ligand binding domain of a transcription 94.11
cd06271268 PBP1_AglR_RafR_like Ligand-binding domain of DNA t 94.03
cd08442193 PBP2_YofA_SoxR_like The C-terminal substrate bindi 93.94
PRK11151305 DNA-binding transcriptional regulator OxyR; Provis 93.89
cd06288269 PBP1_sucrose_transcription_regulator Ligand-bindin 93.89
TIGR02122320 TRAP_TAXI TRAP transporter solute receptor, TAXI f 93.88
cd06312271 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi 93.66
PF03466209 LysR_substrate: LysR substrate binding domain; Int 93.64
cd08418201 PBP2_TdcA The C-terminal substrate binding domain 93.54
cd06305273 PBP1_methylthioribose_binding_like Methylthioribos 93.5
cd08440197 PBP2_LTTR_like_4 TThe C-terminal substrate binding 93.47
TIGR00363258 lipoprotein, YaeC family. This family of putative 93.35
PRK12684313 transcriptional regulator CysB-like protein; Revie 93.17
cd06310273 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi 93.17
cd08420201 PBP2_CysL_like C-terminal substrate binding domain 93.07
cd08438197 PBP2_CidR The C-terminal substrate binding domain 93.04
cd06301272 PBP1_rhizopine_binding_like Periplasmic binding pr 93.02
cd06313272 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi 92.97
cd08463203 PBP2_DntR_like_4 The C-terminal substrate binding 92.81
COG1609333 PurR Transcriptional regulators [Transcription] 92.79
CHL00180305 rbcR LysR transcriptional regulator; Provisional 92.74
cd06309273 PBP1_YtfQ_like Periplasmic binding domain of ABC-t 92.72
cd08412198 PBP2_PAO1_like The C-terminal substrate-binding do 92.62
cd01575268 PBP1_GntR Ligand-binding domain of DNA transcripti 92.48
cd08433198 PBP2_Nac The C-teminal substrate binding domain of 92.4
cd06284267 PBP1_LacI_like_6 Ligand-binding domain of an uncha 92.37
cd06283267 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of 92.32
TIGR02990239 ectoine_eutA ectoine utilization protein EutA. Mem 92.2
cd06294270 PBP1_ycjW_transcription_regulator_like Ligand-bind 92.18
cd06285265 PBP1_LacI_like_7 Ligand-binding domain of uncharac 92.12
TIGR00787257 dctP tripartite ATP-independent periplasmic transp 91.92
cd06299265 PBP1_LacI_like_13 Ligand-binding domain of DNA-bin 91.9
cd06297269 PBP1_LacI_like_12 Ligand-binding domain of unchara 91.87
PRK11242296 DNA-binding transcriptional regulator CynR; Provis 91.85
cd08435201 PBP2_GbpR The C-terminal substrate binding domain 91.84
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 91.84
cd01540289 PBP1_arabinose_binding Periplasmic L-arabinose-bin 91.8
cd06272261 PBP1_hexuronate_repressor_like Ligand-binding doma 91.79
cd08461198 PBP2_DntR_like_3 The C-terminal substrate binding 91.76
PRK12679316 cbl transcriptional regulator Cbl; Reviewed 91.72
cd06270268 PBP1_GalS_like Ligand binding domain of DNA transc 91.67
cd08415196 PBP2_LysR_opines_like The C-terminal substrate-dom 91.62
cd06275269 PBP1_PurR Ligand-binding domain of purine represso 91.6
cd06296270 PBP1_CatR_like Ligand-binding domain of a LacI-lik 91.59
cd06308270 PBP1_sensor_kinase_like Periplasmic binding domain 91.53
PRK10014342 DNA-binding transcriptional repressor MalI; Provis 91.52
cd08411200 PBP2_OxyR The C-terminal substrate-binding domain 91.51
cd06291265 PBP1_Qymf_like Ligand binding domain of the lacI-l 91.5
cd06293269 PBP1_LacI_like_11 Ligand-binding domain of unchara 91.37
cd06274264 PBP1_FruR Ligand binding domain of DNA transcripti 91.32
cd08462200 PBP2_NodD The C-terminal substsrate binding domain 91.26
cd08434195 PBP2_GltC_like The substrate binding domain of Lys 91.26
cd01542259 PBP1_TreR_like Ligand-binding domain of DNA transc 91.25
cd06292273 PBP1_LacI_like_10 Ligand-binding domain of unchara 91.24
cd08466200 PBP2_LeuO The C-terminal substrate binding domain 91.21
cd06278266 PBP1_LacI_like_2 Ligand-binding domain of uncharac 91.2
cd08413198 PBP2_CysB_like The C-terminal substrate domain of 91.16
cd06289268 PBP1_MalI_like Ligand-binding domain of MalI, a tr 90.98
cd06324305 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b 90.94
cd08417200 PBP2_Nitroaromatics_like The C-terminal substrate 90.92
PRK10653295 D-ribose transporter subunit RbsB; Provisional 90.76
cd06316294 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi 90.63
cd06311274 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi 90.53
PRK12682309 transcriptional regulator CysB-like protein; Revie 90.52
PRK12681324 cysB transcriptional regulator CysB; Reviewed 90.46
PRK12683309 transcriptional regulator CysB-like protein; Revie 90.46
PRK10703341 DNA-binding transcriptional repressor PurR; Provis 90.39
PRK11480320 tauA taurine transporter substrate binding subunit 90.38
cd08444198 PBP2_Cbl The C-terminal substrate binding domain o 90.33
cd06307275 PBP1_uncharacterized_sugar_binding Periplasmic sug 90.28
cd08465200 PBP2_ToxR The C-terminal substrate binding domain 90.27
PRK10837290 putative DNA-binding transcriptional regulator; Pr 90.01
PRK09791302 putative DNA-binding transcriptional regulator; Pr 90.01
cd06303280 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding prot 89.97
PRK10423327 transcriptional repressor RbsR; Provisional 89.97
cd08464200 PBP2_DntR_like_2 The C-terminal substrate binding 89.85
cd08437198 PBP2_MleR The substrate binding domain of LysR-typ 89.84
cd01574264 PBP1_LacI Ligand-binding domain of DNA transcripti 89.8
cd08441198 PBP2_MetR The C-terminal substrate binding domain 89.75
cd08426199 PBP2_LTTR_like_5 The C-terminal substrate binding 89.72
cd06322267 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b 89.68
TIGR02424300 TF_pcaQ pca operon transcription factor PcaQ. Memb 89.64
cd08460200 PBP2_DntR_like_1 The C-terminal substrate binding 89.55
cd08436194 PBP2_LTTR_like_3 The C-terminal substrate binding 89.55
cd06290265 PBP1_LacI_like_9 Ligand-binding domain of uncharac 89.38
cd06287269 PBP1_LacI_like_8 Ligand-binding domain of uncharac 89.17
cd01544270 PBP1_GalR Ligand-binding domain of DNA transcripti 89.11
cd08419197 PBP2_CbbR_RubisCO_like The C-terminal substrate bi 89.04
PRK11303328 DNA-binding transcriptional regulator FruR; Provis 88.97
PRK09860383 putative alcohol dehydrogenase; Provisional 88.74
cd06279283 PBP1_LacI_like_3 Ligand-binding domain of uncharac 88.58
cd08456196 PBP2_LysR The C-terminal substrate binding domain 88.43
PF00532279 Peripla_BP_1: Periplasmic binding proteins and sug 88.39
PF13377160 Peripla_BP_3: Periplasmic binding protein-like dom 88.37
cd08425197 PBP2_CynR The C-terminal substrate-binding domain 88.22
cd01541273 PBP1_AraR Ligand-binding domain of DNA transcripti 88.09
cd06306268 PBP1_TorT-like TorT-like proteins, a periplasmic b 88.0
cd06280263 PBP1_LacI_like_4 Ligand-binding domain of uncharac 87.86
cd08467200 PBP2_SyrM The C-terminal substrate binding of LysR 87.52
cd08443198 PBP2_CysB The C-terminal substrate domain of LysR- 87.41
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 87.25
cd06321271 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b 87.24
PF13407257 Peripla_BP_4: Periplasmic binding protein domain; 87.05
cd01543265 PBP1_XylR Ligand-binding domain of DNA transcripti 87.01
PRK15454395 ethanol dehydrogenase EutG; Provisional 86.71
TIGR02417327 fruct_sucro_rep D-fructose-responsive transcriptio 86.69
PRK10341312 DNA-binding transcriptional activator TdcA; Provis 86.52
cd01539303 PBP1_GGBP Periplasmic glucose/galactose-binding pr 86.44
PRK12680327 transcriptional regulator CysB-like protein; Revie 86.38
cd06318282 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi 86.36
cd08192370 Fe-ADH7 Iron-containing alcohol dehydrogenases-lik 86.19
COG1454377 EutG Alcohol dehydrogenase, class IV [Energy produ 86.15
cd08427195 PBP2_LTTR_like_2 The C-terminal substrate binding 86.05
cd06281269 PBP1_LacI_like_5 Ligand-binding domain of uncharac 86.04
cd08423200 PBP2_LTTR_like_6 The C-terminal substrate binding 85.91
cd08458196 PBP2_NocR The C-terminal substrate-domain of LysR- 85.89
cd06354265 PBP1_BmpA_PnrA_like Periplasmic binding domain of 85.82
PF03480286 SBP_bac_7: Bacterial extracellular solute-binding 85.2
cd08190414 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv 85.19
cd08449197 PBP2_XapR The C-terminal substrate binding domain 85.09
cd06302298 PBP1_LsrB_Quorum_Sensing Periplasmic binding domai 84.96
PRK09701311 D-allose transporter subunit; Provisional 84.93
cd08469221 PBP2_PnbR The C-terminal substrate binding domain 84.81
PRK11063271 metQ DL-methionine transporter substrate-binding s 84.8
cd08486198 PBP2_CbnR The C-terminal substrate binding domain 84.64
PRK11013309 DNA-binding transcriptional regulator LysR; Provis 84.64
PRK09526342 lacI lac repressor; Reviewed 84.62
cd06277268 PBP1_LacI_like_1 Ligand-binding domain of uncharac 84.56
PRK09492315 treR trehalose repressor; Provisional 84.44
PRK10624382 L-1,2-propanediol oxidoreductase; Provisional 84.41
cd08551370 Fe-ADH iron-containing alcohol dehydrogenases (Fe- 84.34
cd08189374 Fe-ADH5 Iron-containing alcohol dehydrogenases-lik 84.33
PRK11233305 nitrogen assimilation transcriptional regulator; P 84.22
PRK14987331 gluconate operon transcriptional regulator; Provis 84.14
cd08429204 PBP2_NhaR The C-terminal substrate binding domain 84.04
cd08457196 PBP2_OccR The C-terminal substrate-domain of LysR- 83.94
cd08193376 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze 83.93
PRK10727343 DNA-binding transcriptional regulator GalR; Provis 83.65
PF13685250 Fe-ADH_2: Iron-containing alcohol dehydrogenase; P 83.6
COG3473238 Maleate cis-trans isomerase [Secondary metabolites 83.56
cd08428195 PBP2_IciA_ArgP The C-terminal substrate binding do 83.28
COG0715335 TauA ABC-type nitrate/sulfonate/bicarbonate transp 83.21
PRK10339327 DNA-binding transcriptional repressor EbgR; Provis 83.07
cd06286260 PBP1_CcpB_like Ligand-binding domain of a novel tr 82.84
PRK11074300 putative DNA-binding transcriptional regulator; Pr 82.84
cd08194375 Fe-ADH6 Iron-containing alcohol dehydrogenases-lik 82.63
TIGR01256216 modA molybdenum ABC transporter, periplasmic molyb 82.55
cd08414197 PBP2_LTTR_aromatics_like The C-terminal substrate 82.49
PRK09508314 leuO leucine transcriptional activator; Reviewed 82.37
PRK11482317 putative DNA-binding transcriptional regulator; Pr 82.28
PRK11041309 DNA-binding transcriptional regulator CytR; Provis 82.12
cd08453200 PBP2_IlvR The C-terminal substrate binding domain 81.78
cd06304260 PBP1_BmpA_like Periplasmic binding component of a 81.4
cd08185380 Fe-ADH1 Iron-containing alcohol dehydrogenases-lik 81.26
COG1638332 DctP TRAP-type C4-dicarboxylate transport system, 81.18
PF00465366 Fe-ADH: Iron-containing alcohol dehydrogenase ; In 81.08
TIGR02638379 lactal_redase lactaldehyde reductase. This clade o 80.72
TIGR02405311 trehalos_R_Ecol trehalose operon repressor, proteo 80.56
cd08445203 PBP2_BenM_CatM_CatR The C-terminal substrate bindi 80.52
PRK10401346 DNA-binding transcriptional regulator GalS; Provis 80.51
PRK10936343 TMAO reductase system periplasmic protein TorT; Pr 80.49
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=8.9e-89  Score=700.10  Aligned_cols=701  Identities=20%  Similarity=0.332  Sum_probs=571.4

Q ss_pred             HhcccccCCCcEEecccCCCCcccCCCCceEEecCCcHHHHHHHHHHHHHcCCeEEEEEEEcCCcccchHHHHHHHHHhC
Q 003633            2 ISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKN   81 (806)
Q Consensus         2 v~~i~~~~~vP~Is~~at~p~Ls~~~~p~f~Rt~psd~~q~~ai~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~   81 (806)
                      +..+|..+++|.|+++.  |.  +...++.+.+.|+-   ..|+++++.||+|.+++++| |.+.|...++++.+.+.++
T Consensus       106 ltsfc~aLh~~~vtpsf--p~--~~~~~Fviq~RP~l---~~al~s~i~hy~W~~fv~ly-D~~rg~s~Lqai~~~a~~~  177 (897)
T KOG1054|consen  106 LTSFCGALHVSFVTPSF--PT--DGDNQFVIQMRPAL---KGALLSLIDHYKWEKFVYLY-DTDRGLSILQAIMEAAAQN  177 (897)
T ss_pred             hhhhccceeeeeecccC--Cc--CCCceEEEEeCchH---HHHHHHHHHhcccceEEEEE-cccchHHHHHHHHHHHHhc
Confidence            45678999999999866  32  23346788888764   48999999999999999999 8889999999999999999


Q ss_pred             CcEEEEEeccCCCCChhHHHHHHHhcCCCCCeEEEEecCcchHHHHHHHHHHcCCccCCcEEEEcCcccccccccccCCh
Q 003633           82 MAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQ  161 (806)
Q Consensus        82 g~~i~~~~~~~~~~~~~~~~~~l~~ik~~~~rvivl~~~~~~~~~i~~~a~~~gm~~~~~~wi~t~~~~~~~~~~~~~~~  161 (806)
                      +++|.....-.+ .+..+++.+++.+...+.+.|++.|..+...+++.++.++|-...+|++|+.+..-...+.     .
T Consensus       178 nw~VtA~~v~~~-~d~~~yr~~f~~l~~r~e~rv~iDce~~~~~~il~q~i~~~k~~~~YHYvlaNl~f~d~dl-----~  251 (897)
T KOG1054|consen  178 NWQVTAINVGNI-NDVKEYRMLFEMLDRRQENRVLIDCESERRNRILLQVIELGKHVKGYHYVLANLGFTDIDL-----E  251 (897)
T ss_pred             CceEEEEEcCCc-ccHHHHHHHHHHHhccccceEEEEcccHHHHHHHHHHHHHhhhccceEEEEeeCCCchhhH-----H
Confidence            999987664443 3556699999999999999999999999999999999999988899999999854433332     2


Q ss_pred             hhhhhccceEEEEEeCCCChhhHHHHHHHhhhcc---CCCCCCCCccchhhhhhHHHHHHHHHHHHHhhc-CccccCCCC
Q 003633          162 TSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQ---KGLVSAGLNTYGLYAYDTVWAVARSIDKFINEH-NITFSASHE  237 (806)
Q Consensus       162 ~~~~~~~gv~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~~~~~~~~~aYDAv~~lA~Al~~~~~~~-~~~~~~~~~  237 (806)
                      .......++.|++....++|..++|.++|++...   ++.+...+..-++.+|||+.++++|+..+.++. .+..     
T Consensus       252 ~f~~g~aNitgFqivn~~~~~~~k~~~~~~~l~~~~~~g~~~~~~k~tsAlthDailV~~eaf~~~~~q~~~~~r-----  326 (897)
T KOG1054|consen  252 RFQHGGANITGFQIVNKNNPMVKKFIQRWKELDEREYPGASNDPIKYTSALTHDAILVMAEAFRSLRRQRIDISR-----  326 (897)
T ss_pred             HHhcCCcceeEEEEecCCChHHHHHHHHHhhhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhhchhc-----
Confidence            3344556789999999999999999999987654   222334566668899999999999999998876 3331     


Q ss_pred             CCCCcccccccccccccCchHHHHHHHHccccCCceeeEEEecCCCeecccEEEEEeecCceEEEEEeeCCCCccccCcc
Q 003633          238 LPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPPE  317 (806)
Q Consensus       238 l~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~~gl~~~~~~  317 (806)
                       +...|+++. .+..+|.+|..+-.+++++.++|+||+|+||..|.|.+...+|++++.++.++||+|....|+......
T Consensus       327 -RG~~GD~~a-n~~~p~~qG~~I~ralk~v~~eGLTGniqFd~~G~R~Nyt~~i~elk~~~~rk~~~W~e~~~fv~~~t~  404 (897)
T KOG1054|consen  327 -RGNAGDCLA-NPAVPWEQGIDIERALKQVQVEGLTGNIQFDKYGRRTNYTIDIVELKSNGSRKVGYWNEGEGFVPGSTV  404 (897)
T ss_pred             -cCCCccccC-CCCCchhcchhHHHHHHheeecccccceeecccCccccceEEEEEeccCCcceeeeecccCceeecccc
Confidence             112232222 136689999999999999999999999999999999999999999999999999999999998643211


Q ss_pred             cccCCCCCCCccccccceeeeCCCCccCCCceeecCCCCCeEEeeeccCCccceEEe---ecCCceeEeeeHHHHHHHHH
Q 003633          318 TLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTE---EHDSHKVQGYCIDILLEALK  394 (806)
Q Consensus       318 ~~~~~~~~~~~~~~~l~~i~Wpg~~~~~P~~~~~~~~g~~lrv~v~~~~~~~~f~~~---~~~~~~~~G~~idl~~~i~~  394 (806)
                      .. ..   +...                      ..+.++..|.+....||..+...   -.|+.+++|||+||+.+||+
T Consensus       405 a~-~~---~d~~----------------------~~~n~tvvvttiL~spyvm~kkn~~~~egn~ryEGyCvdLa~~iAk  458 (897)
T KOG1054|consen  405 AQ-SR---NDQA----------------------SKENRTVVVTTILESPYVMLKKNHEQLEGNERYEGYCVDLAAEIAK  458 (897)
T ss_pred             cc-cc---cccc----------------------ccccceEEEEEecCCchhHHHhhHHHhcCCcccceeHHHHHHHHHH
Confidence            10 00   0000                      01234555555554455433221   14678999999999999999


Q ss_pred             hCCCCcceEEEEcC-CC--CCCCC-HHHHHHHHHcCcccEEEeeEEEecCccceeEecccccccceEEEEeccC-CCCCc
Q 003633          395 LVPYDVPYKFELFG-DG--LSNPS-YDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINN-HKASA  469 (806)
Q Consensus       395 ~l~~~~~~~~~~~~-~~--~~n~s-~~~l~~~l~~g~~D~~~~~~~it~~r~~~vdft~p~~~~~~~~~v~~~~-~~~~~  469 (806)
                      +.++.+++.++..| +|  ...++ |+||++.|..|++|++++++|||..|++.+|||.|||+.|+++|+++|. ..+..
T Consensus       459 hi~~~Y~l~iv~dgkyGardaD~k~WnGMvGeLv~grAdiavApLTIt~~REeviDFSKPfMslGISIMIKKPqKsk~gV  538 (897)
T KOG1054|consen  459 HIGIKYKLFIVGDGKYGARDADTKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGV  538 (897)
T ss_pred             hcCceEEEEEecCCcccccCCCcccccchhHHHhcCccceEEeeeeeehhhhhhhccccchhhcCeEEEEeCcccCCCCe
Confidence            99987444444433 22  24455 9999999999999999999999999999999999999999999999988 78899


Q ss_pred             ceeecCcchhhHHHHHHHHHHHHHHhhhhccccCCCCCC------C-------CccchhhHHHHHHHhhhccCcc-cccc
Q 003633          470 WVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRG------P-------PRRQIATMFLFSFSTLFKTNQE-ATVS  535 (806)
Q Consensus       470 ~~~l~PF~~~~W~~~~~~~~~~~~v~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~l~~~~~~-~~~s  535 (806)
                      ++|+.|+..++|+|++..++.|++++++..|++|.+|+-      +       ....+.|++||+++++++|+.+ .|+|
T Consensus       539 FSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~rg~~t~~~~~NeFgifNsLWFsLgAFMQQG~DI~PRs  618 (897)
T KOG1054|consen  539 FSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFERGRFTPSDPPNEFGIFNSLWFSLGAFMQQGCDISPRS  618 (897)
T ss_pred             eeecchhHHHHHHHHHHHHhcceEEEEEEeccCchheeccccccCCCCCCCCCccchhhHHHHHHHHHHHhcCCCCCccc
Confidence            999999999999999999999999999999999877652      1       1235899999999999999988 8999


Q ss_pred             cchhhhHHHHHhhhhhhhccccceeeeeeeeccccCCCCChhHhhhCCC-ceeEEeCchhHHHhhhhc--------cccc
Q 003633          536 SLGRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITNDW-PIGYQVGSFAYSYLSDSL--------RIQK  606 (806)
Q Consensus       536 ~~~R~v~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~-~ig~~~gs~~~~~l~~~~--------~~~~  606 (806)
                      .++|++-.+||||.|||.++|||||++|||++++.+||+|.+||.++.+ ..|+..+....+++++..        ....
T Consensus       619 lSGRIvggvWWFFTlIIiSSYTANLAAFLTvErMvsPIESaEDLAkQteIaYGt~~~GSTkeFFr~Skiavy~kMW~yM~  698 (897)
T KOG1054|consen  619 LSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMK  698 (897)
T ss_pred             cccceeccchhhhhhhhhhhhhhHHHHHHhHHhhcCcchhHHHHhhcceeeeeecCCCchHHHHhhhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999998877 367777777777775321        0000


Q ss_pred             c-cc-eeCCCHhHHHHHHhcCCCCCCeEEEEeCchhHHHHhhC-CCCeEEeCCccccCCceeeecCCCCchHHHHHHHHh
Q 003633          607 S-RL-ISLGSPEDYERALRQGPRNGGVAAIVDELPYVQLFLSN-QTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILK  683 (806)
Q Consensus       607 ~-~~-~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~spl~~~~n~~il~  683 (806)
                      + .. +-..+..|.++.+++.   .+.+|++.|...-+|.-++ .|+.+.+|..+.+.+||+|.||||.|+..+|.++++
T Consensus       699 SaepsVFv~t~aeGv~rVRks---KGkyAfLLEsTmNey~eqRkPCDTMKVGgNLds~GYGiATp~Gsslr~~vNLAvLk  775 (897)
T KOG1054|consen  699 SAEPSVFVRTTAEGVARVRKS---KGKYAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLK  775 (897)
T ss_pred             cCCcceeeehhhhHHHHHHhc---CCceEeehHhhhhhhhhccCCccceecccccCCcceeecCCCCcccccchhhhhhh
Confidence            0 11 2234566777777664   7889999999888887654 799999999999999999999999999999999999


Q ss_pred             hhccchhHHHHHhhc-CCCCCCCcCcCCC-CccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 003633          684 LSENGMLQKLHEKWF-CKEGCPEERRQHS-EPHQLRLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYKQ  752 (806)
Q Consensus       684 l~e~G~~~~i~~kw~-~~~~c~~~~~~~~-~~~~L~l~~~~g~F~il~~g~~lal~vf~~E~~~~~~~~~~  752 (806)
                      |.|.|+++++++||| .+++|.....+.+ ..+.|+|.+++|+||||..|+++|+++.++|++|+.+...+
T Consensus       776 L~E~G~LdKLkNKWWYDkGeC~sg~~ds~~ktsaLsLSnVAGvFYIL~gGl~laMlvALiEF~yksr~Eak  846 (897)
T KOG1054|consen  776 LNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAK  846 (897)
T ss_pred             hcccchHHHhhhhhcccccccCCCCCCCCcchhhcchhhccceeeeehhhHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999 4899998866653 44799999999999999999999999999999998876654

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor Back     alignment and domain information
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor Back     alignment and domain information
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor Back     alignment and domain information
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor Back     alignment and domain information
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor Back     alignment and domain information
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor Back     alignment and domain information
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor Back     alignment and domain information
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor Back     alignment and domain information
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family Back     alignment and domain information
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor Back     alignment and domain information
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor Back     alignment and domain information
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor Back     alignment and domain information
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family Back     alignment and domain information
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues Back     alignment and domain information
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases Back     alignment and domain information
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G Back     alignment and domain information
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [] Back     alignment and domain information
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor Back     alignment and domain information
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors Back     alignment and domain information
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2 Back     alignment and domain information
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors Back     alignment and domain information
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) Back     alignment and domain information
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional Back     alignment and domain information
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family Back     alignment and domain information
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene Back     alignment and domain information
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] Back     alignment and domain information
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family Back     alignment and domain information
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins Back     alignment and domain information
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems Back     alignment and domain information
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway Back     alignment and domain information
>PRK10797 glutamate and aspartate transporter subunit; Provisional Back     alignment and domain information
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF) Back     alignment and domain information
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes Back     alignment and domain information
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family Back     alignment and domain information
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides Back     alignment and domain information
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional Back     alignment and domain information
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C Back     alignment and domain information
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins Back     alignment and domain information
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ Back     alignment and domain information
>TIGR02285 conserved hypothetical protein Back     alignment and domain information
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids Back     alignment and domain information
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein Back     alignment and domain information
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily Back     alignment and domain information
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A Back     alignment and domain information
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ] Back     alignment and domain information
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein Back     alignment and domain information
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A Back     alignment and domain information
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region Back     alignment and domain information
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily Back     alignment and domain information
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>COG3107 LppC Putative lipoprotein [General function prediction only] Back     alignment and domain information
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis Back     alignment and domain information
>cd08468 PBP2_Pa0477 The C-terminal substrate biniding domain of an uncharacterized LysR-like transcriptional regulator Pa0477 related to DntR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd05466 PBP2_LTTR_substrate The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins Back     alignment and domain information
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01481 ccpA catabolite control protein A Back     alignment and domain information
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation Back     alignment and domain information
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs Back     alignment and domain information
>cd08459 PBP2_DntR_NahR_LinR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd08421 PBP2_LTTR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd08442 PBP2_YofA_SoxR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional Back     alignment and domain information
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family Back     alignment and domain information
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins [] Back     alignment and domain information
>cd08418 PBP2_TdcA The C-terminal substrate binding domain of LysR-type transcriptional regulator TdcA, which is involved in the degradation of L-serine and L-threonine, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>cd08440 PBP2_LTTR_like_4 TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>PRK12684 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd08420 PBP2_CysL_like C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08438 PBP2_CidR The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines Back     alignment and domain information
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd08463 PBP2_DntR_like_4 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>COG1609 PurR Transcriptional regulators [Transcription] Back     alignment and domain information
>CHL00180 rbcR LysR transcriptional regulator; Provisional Back     alignment and domain information
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems Back     alignment and domain information
>cd08412 PBP2_PAO1_like The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd08433 PBP2_Nac The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria Back     alignment and domain information
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR Back     alignment and domain information
>TIGR02990 ectoine_eutA ectoine utilization protein EutA Back     alignment and domain information
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors Back     alignment and domain information
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family Back     alignment and domain information
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia Back     alignment and domain information
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs Back     alignment and domain information
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional Back     alignment and domain information
>cd08435 PBP2_GbpR The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily Back     alignment and domain information
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd08461 PBP2_DntR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK12679 cbl transcriptional regulator Cbl; Reviewed Back     alignment and domain information
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism Back     alignment and domain information
>cd08415 PBP2_LysR_opines_like The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli Back     alignment and domain information
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation Back     alignment and domain information
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems Back     alignment and domain information
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional Back     alignment and domain information
>cd08411 PBP2_OxyR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs Back     alignment and domain information
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs Back     alignment and domain information
>cd08462 PBP2_NodD The C-terminal substsrate binding domain of NodD family of LysR-type transcriptional regulators that regulates the expression of nodulation (nod) genes; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08434 PBP2_GltC_like The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold Back     alignment and domain information
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd08466 PBP2_LeuO The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of leucine synthesis operon, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd08413 PBP2_CysB_like The C-terminal substrate domain of LysR-type transcriptional regulators CysB-like contains type 2 periplasmic binding fold Back     alignment and domain information
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria Back     alignment and domain information
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK10653 D-ribose transporter subunit RbsB; Provisional Back     alignment and domain information
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PRK12682 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>PRK12681 cysB transcriptional regulator CysB; Reviewed Back     alignment and domain information
>PRK12683 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional Back     alignment and domain information
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional Back     alignment and domain information
>cd08444 PBP2_Cbl The C-terminal substrate binding domain of LysR-type transcriptional regulator Cbl, which is required for expression of sulfate starvation-inducible (ssi) genes, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems Back     alignment and domain information
>cd08465 PBP2_ToxR The C-terminal substrate binding domain of LysR-type transcriptional regulator ToxR regulates the expression of the toxoflavin biosynthesis genes; contains the type 2 periplasmic bindinig fold Back     alignment and domain information
>PRK10837 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PRK09791 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs Back     alignment and domain information
>PRK10423 transcriptional repressor RbsR; Provisional Back     alignment and domain information
>cd08464 PBP2_DntR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08437 PBP2_MleR The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold Back     alignment and domain information
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd08441 PBP2_MetR The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold Back     alignment and domain information
>cd08426 PBP2_LTTR_like_5 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ Back     alignment and domain information
>cd08460 PBP2_DntR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08436 PBP2_LTTR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism Back     alignment and domain information
>cd08419 PBP2_CbbR_RubisCO_like The C-terminal substrate binding of LysR-type transcriptional regulator (CbbR) of RubisCO operon, which is involved in the carbon dioxide fixation, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional Back     alignment and domain information
>PRK09860 putative alcohol dehydrogenase; Provisional Back     alignment and domain information
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd08456 PBP2_LysR The C-terminal substrate binding domain of LysR, transcriptional regulator for lysine biosynthesis, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators Back     alignment and domain information
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A Back     alignment and domain information
>cd08425 PBP2_CynR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator CynR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria Back     alignment and domain information
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd08467 PBP2_SyrM The C-terminal substrate binding of LysR-type symbiotic regulator SyrM, which activates expression of nodulation gene NodD3, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08443 PBP2_CysB The C-terminal substrate domain of LysR-type transcriptional regulator CysB contains type 2 periplasmic binding fold Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR) Back     alignment and domain information
>PRK15454 ethanol dehydrogenase EutG; Provisional Back     alignment and domain information
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor Back     alignment and domain information
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional Back     alignment and domain information
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species Back     alignment and domain information
>PRK12680 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway Back     alignment and domain information
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>cd08427 PBP2_LTTR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd08423 PBP2_LTTR_like_6 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08458 PBP2_NocR The C-terminal substrate-domain of LysR-type transcriptional regulator, NocR, involved in the catabolism of nopaline, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea Back     alignment and domain information
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane Back     alignment and domain information
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism Back     alignment and domain information
>cd08449 PBP2_XapR The C-terminal substrate binding domain of LysR-type transcriptional regulator XapR involved in xanthosine catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs Back     alignment and domain information
>PRK09701 D-allose transporter subunit; Provisional Back     alignment and domain information
>cd08469 PBP2_PnbR The C-terminal substrate binding domain of LysR-type transcriptional regulator PnbR, which is involved in regulating the pnb genes encoding enzymes for 4-nitrobenzoate catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>cd08486 PBP2_CbnR The C-terminal substrate binding domain of LysR-type transcriptional regulator, CbnR, involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11013 DNA-binding transcriptional regulator LysR; Provisional Back     alignment and domain information
>PRK09526 lacI lac repressor; Reviewed Back     alignment and domain information
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK09492 treR trehalose repressor; Provisional Back     alignment and domain information
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional Back     alignment and domain information
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like Back     alignment and domain information
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional Back     alignment and domain information
>PRK14987 gluconate operon transcriptional regulator; Provisional Back     alignment and domain information
>cd08429 PBP2_NhaR The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08457 PBP2_OccR The C-terminal substrate-domain of LysR-type transcriptional regulator, OccR, involved in the catabolism of octopine, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor Back     alignment and domain information
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional Back     alignment and domain information
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C Back     alignment and domain information
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd08428 PBP2_IciA_ArgP The C-terminal substrate binding domain of LysR-type transcriptional regulator, ArgP (IciA), for arginine exporter (ArgO); contains the type 2 periplasmic binding fold Back     alignment and domain information
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional Back     alignment and domain information
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species Back     alignment and domain information
>PRK11074 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein Back     alignment and domain information
>cd08414 PBP2_LTTR_aromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold Back     alignment and domain information
>PRK09508 leuO leucine transcriptional activator; Reviewed Back     alignment and domain information
>PRK11482 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional Back     alignment and domain information
>cd08453 PBP2_IlvR The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold Back     alignment and domain information
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria Back     alignment and domain information
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1 Back     alignment and domain information
>TIGR02638 lactal_redase lactaldehyde reductase Back     alignment and domain information
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial Back     alignment and domain information
>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional Back     alignment and domain information
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query806
3kg2_A823 Ampa Subtype Ionotropic Glutamate Receptor In Compl 8e-23
3q41_A384 Crystal Structure Of The Glun1 N-Terminal Domain (N 1e-16
3qel_A383 Crystal Structure Of Amino Terminal Domains Of The 7e-10
4f11_A433 Crystal Structure Of The Extracellular Domain Of Hu 1e-09
3qlt_A395 Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge H 5e-09
3h6g_A395 Crystal Structure Of The Glur6 Amino Terminal Domai 1e-08
3lmk_A492 Ligand Binding Domain Of Metabotropoc Glutamate Rec 2e-08
3qek_A384 Crystal Structure Of Amino Terminal Domain Of The N 4e-08
3qxm_A258 Crystal Structure Of Human Gluk2 Ligand-Binding Cor 2e-06
2i0c_A259 Crystal Structure Of The Glur6 Ligand Binding Core 2e-06
3sm9_A479 Crystal Structure Of Metabotropic Glutamate Recepto 3e-06
2e4u_A555 Crystal Structure Of The Extracellular Region Of Th 3e-06
2xxw_A261 Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Di 3e-06
2xxw_A261 Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Di 4e-04
3g3g_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 3e-06
2xxr_A261 Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lb 4e-06
2xxr_A261 Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lb 6e-04
3g3h_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 4e-06
3g3h_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 7e-04
2xxu_A261 Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Di 4e-06
2xxu_A261 Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Di 2e-04
1s50_A259 X-Ray Structure Of The Glur6 Ligand Binding Core (S 4e-06
1yae_A312 Structure Of The Kainate Receptor Subunit Glur6 Ago 4e-06
1yae_A312 Structure Of The Kainate Receptor Subunit Glur6 Ago 2e-04
2i0b_A259 Crystal Structure Of The Glur6 Ligand Binding Core 1e-05
2i0b_A259 Crystal Structure Of The Glur6 Ligand Binding Core 7e-04
1pb7_A292 Crystal Structure Of The Nr1 Ligand Binding Core In 1e-05
1pb8_A292 Crystal Structure Of The Nr1 Ligand Binding Core In 1e-05
3oek_A286 Crystal Structure Of Glun2d Ligand-Binding Core In 1e-05
4f2o_A258 Quisqualate Bound To The D655a Mutant Of The Ligand 1e-05
4f22_A258 Kainate Bound To The K660a Mutant Of The Ligand Bin 1e-05
3lsw_A258 Aniracetam Bound To The Ligand Binding Domain Of Gl 1e-05
3m3f_A258 Pepa Bound To The Ligand Binding Domain Of Glua3 (F 1e-05
3dp4_A278 Crystal Structure Of The Binding Domain Of The Ampa 1e-05
3mq4_A481 Metabotropic Glutamate Receptor Mglur7 Complexed Wi 2e-05
2e4z_A501 Crystal Structure Of The Ligand-Binding Region Of T 2e-05
3ks9_A496 Metabotropic Glutamate Receptor Mglur1 Complexed Wi 2e-05
1ewk_A490 Crystal Structure Of Metabotropic Glutamate Recepto 2e-05
3u92_A257 Crystal Structure Of The Gluk3 Ligand Binding Domai 3e-05
3g3j_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 3e-05
3g3j_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 7e-04
3g3k_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 3e-05
3g3k_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 7e-04
3g3i_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 3e-05
3g3i_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 7e-04
3s9e_A258 Crystal Structure Of The Kainate Receptor Gluk3 Lig 3e-05
2f34_A258 Crystal Structure Of The Glur5 Ligand Binding Core 8e-05
1txf_A258 Crystal Structure Of The Glur5 Ligand Binding Core 8e-05
2zns_A256 Crystal Structure Of The Ligand-Binding Core Of The 8e-05
2wky_A258 Crystal Structure Of The Ligand-Binding Core Of Glu 8e-05
1ycj_A257 Crystal Structure Of The Kainate Receptor Glur5 Lig 9e-05
3dp6_A279 Crystal Structure Of The Binding Domain Of The Ampa 9e-05
3rnn_A292 Crystal Structure Of Iglur2 Ligand Binding Domain W 9e-05
3rn8_A280 Crystal Structure Of Iglur2 Ligand Binding Domain A 1e-04
2xx7_A291 Crystal Structure Of 1-(4-(1-Pyrrolidinylcarbonyl)p 1e-04
4io2_A248 Crystal Structure Of The Avglur1 Ligand Binding Dom 1e-04
1gr2_A279 Structure Of A Glutamate Receptor Ligand Binding Co 1e-04
3olz_A398 Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 1e-04
3t9x_B258 Glutamate Bound To A Double Cysteine Mutant (V484cE 1e-04
2xhd_A263 Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridiny 2e-04
3r7x_A263 Crystal Structure Analysis Of A Quinazolinedione Su 2e-04
3o29_A263 Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Gl 2e-04
3ijo_B258 Crystal Structure Of The Ampa Subunit Glur2 Bound T 2e-04
1mqh_A263 Crystal Structure Of The Glur2 Ligand Binding Core 2e-04
1mqd_A261 X-Ray Structure Of The Glur2 Ligand-Binding Core (S 2e-04
1p1n_A263 Glur2 Ligand Binding Core (S1s2j) Mutant L650t In C 2e-04
1lbc_A263 Crystal Structure Of Glur2 Ligand Binding Core (S1s 2e-04
1m5d_A263 X-ray Structure Of The Glur2 Ligand Binding Core (s 2e-04
1lbb_A263 Crystal Structure Of The Glur2 Ligand Binding Domai 2e-04
1fw0_A263 Crystal Structure Of The Glur2 Ligand Binding Core 2e-04
3t93_B258 Glutamate Bound To A Double Cysteine Mutant (A452cS 2e-04
3pd9_A260 X-Ray Structure Of The Ligand-Binding Core Of Glua2 2e-04
3pd8_A261 X-Ray Structure Of The Ligand-Binding Core Of Glua2 2e-04
3h03_A258 Crystal Structure Of The Binding Domain Of The Ampa 2e-04
3b6w_C263 Crystal Structure Of The Glur2 Ligand Binding Core 2e-04
3b6t_A263 Crystal Structure Of The Glur2 Ligand Binding Core 2e-04
2i3w_A259 Measurement Of Conformational Changes Accompanying 2e-04
2i3v_A259 Measurement Of Conformational Changes Accompanying 2e-04
2anj_A263 Crystal Structure Of The Glur2 Ligand Binding Core 2e-04
2uxa_A261 Crystal Structure Of The Glur2-Flip Ligand Binding 2e-04
3o28_A263 Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Gl 2e-04
3tdj_A263 Crystal Structure Of The Glua2 Ligand-Binding Domai 2e-04
1p1w_A263 Crystal Structure Of The Glur2 Ligand-Binding Core 2e-04
1lb8_A263 Crystal Structure Of The Non-Desensitizing Glur2 Li 2e-04
2gfe_A262 Crystal Structure Of The Glur2 A476e S673d Ligand B 2e-04
2rc7_A294 Crystal Structure Of The Nr3a Ligand Binding Core C 3e-04
2rca_B292 Crystal Structure Of The Nr3b Ligand Binding Core C 4e-04
2a5s_A284 Crystal Structure Of The Nr2a Ligand Binding Core I 4e-04
4f3p_A249 Crystal Structure Of A Glutamine-Binding Periplasmi 4e-04
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (263), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 138/618 (22%), Positives = 252/618 (40%), Gaps = 85/618 (13%)
Query: 179 DSIPKKAFLSRWSGMQQK---GLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSAS 235
           DS+  K F+ RWS +++K   G  +A +       YD V  +  +  + + +  I  S  
Sbjct: 243 DSLVSK-FIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAF-RNLRKQRIEISRR 300
Query: 236 HELPDSKAT-RVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINI 294
               D  A   V   Q      G  + R L Q    GLSG ++F+Q+   ++   +++ +
Sbjct: 301 GNAGDCLANPAVPWGQ------GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMEL 354
Query: 295 DKMEIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADN 354
                 ++GYW +     +   +T        S L+ K   +T      E+P   + A++
Sbjct: 355 KTNGPRKIGYWSEVDKMVLTEDDT--------SGLEQKTVVVTTI---LESPYVMMKANH 403
Query: 355 ARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDG---- 410
           A           +  G       + + +GYC+D+  E  K   +   YK  + GDG    
Sbjct: 404 A-----------ALAG-------NERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGA 443
Query: 411 --LSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGL-VIVAPINNHKA 467
                  ++G+V  +     D A+  + I   R +++DFS+P++S G+ +++      K 
Sbjct: 444 RDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKP 503
Query: 468 SAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRV-----NDDFRGPPRRQ--------- 513
             + FL P   E+W     +++ ++VV++++          ++F      Q         
Sbjct: 504 GVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFG 563
Query: 514 IATMFLFSFSTLFKTNQEATVSSL-GRXXXXXXXXXXXXITSSYTASLSSILTVQQLSTS 572
           I     FS     +   + +  SL GR            I SSYTA+L++ LTV+++ + 
Sbjct: 564 IFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSP 623
Query: 573 VKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRL-------ISLGSPEDYERALRQG 625
           ++  E L +    I Y  G+       +  R  K  +       +    P  + R   +G
Sbjct: 624 IESAEDL-SKQTEIAY--GTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 680
Query: 626 -----PRNGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTA 680
                   G  A +++      +      D   +G      G+G A  + S L   ++ A
Sbjct: 681 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLA 740
Query: 681 ILKLSENGMLQKLHEKWFCKEG-C-PEERRQHSEPHQLRLISFWGL-YLLCGTITFTAFL 737
           +LKLSE G+L KL  KW+  +G C  ++     +   L L +  G+ Y+L G +   A L
Sbjct: 741 VLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGL-AML 799
Query: 738 VFLLRMVCQYVRYKQQQM 755
           V L+   C   R + ++M
Sbjct: 800 VALIEF-CYKSRAEAKRM 816
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd) Length = 384 Back     alignment and structure
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda Receptor Subunit Glun1 And Glun2b In Complex With Ifenprodil Length = 383 Back     alignment and structure
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Gaba(B) Receptor Gbr2 Length = 433 Back     alignment and structure
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge Homodimer Assembly Length = 395 Back     alignment and structure
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer Assembly Length = 395 Back     alignment and structure
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor Mglur5 Complexed With Glutamate Length = 492 Back     alignment and structure
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda Receptor Subunit Glun1 Length = 384 Back     alignment and structure
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In Complex With Novel Marine-Derived Toxins, Neodysiherbaine A Length = 258 Back     alignment and structure
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer Crosslinked By Disulfide Bonds Between Y490c And L752c At 2.25 Angstroms Resolution Length = 259 Back     alignment and structure
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3 Precursor In Presence Of Ly341495 Antagonist Length = 479 Back     alignment and structure
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group Ii Metabotropic Glutamate Receptor Complexed With L-glutamate Length = 555 Back     alignment and structure
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In Complex With Glutamate Length = 261 Back     alignment and structure
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In Complex With Glutamate Length = 261 Back     alignment and structure
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer K665r Mutant With Glutamate And Nacl At 1.3 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer In Complex With Glutamate Length = 261 Back     alignment and structure
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer In Complex With Glutamate Length = 261 Back     alignment and structure
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In Complex With Glutamate Length = 261 Back     alignment and structure
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In Complex With Glutamate Length = 261 Back     alignment and structure
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a) In Complex With Glutamate At 1.65 A Resolution Length = 259 Back     alignment and structure
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist Binding Domain Complexed With Domoic Acid Length = 312 Back     alignment and structure
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist Binding Domain Complexed With Domoic Acid Length = 312 Back     alignment and structure
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq Mutant Dimer At 1.96 Angstroms Resolution Length = 259 Back     alignment and structure
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq Mutant Dimer At 1.96 Angstroms Resolution Length = 259 Back     alignment and structure
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In Complex With Glycine At 1.35 Angstroms Resolution Length = 292 Back     alignment and structure
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In Complex With D-Serine At 1.45 Angstroms Resolution Length = 292 Back     alignment and structure
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex With L- Aspartate Length = 286 Back     alignment and structure
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand Binding Domain Of Glua3 Length = 258 Back     alignment and structure
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding Domain Of Glua3 Length = 258 Back     alignment and structure
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3 Length = 258 Back     alignment and structure
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop Form) Length = 258 Back     alignment and structure
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa Subunit Glur3 Bound To Ampa Length = 278 Back     alignment and structure
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With Ly3414 Antagonist Length = 481 Back     alignment and structure
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The Group Iii Metabotropic Glutamate Receptor Length = 501 Back     alignment and structure
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With Ly341495 Antagonist Length = 496 Back     alignment and structure
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor Subtype 1 Complexed With Glutamate Length = 490 Back     alignment and structure
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain Complex With Kainate And Zinc: P2221 Form Length = 257 Back     alignment and structure
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer I442h K494e K665r I749l Q753k Mutant With Glutamate And Nacl At 1.32 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer I442h K494e K665r I749l Q753k Mutant With Glutamate And Nacl At 1.32 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer I442h K494e K665r I749l Q753k E757q Mutant With Glutamate And Nacl At 1.24 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer I442h K494e K665r I749l Q753k E757q Mutant With Glutamate And Nacl At 1.24 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer I442h K494e I749l Q753k Mutant With Glutamate And Nacl At 1.37 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer I442h K494e I749l Q753k Mutant With Glutamate And Nacl At 1.37 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand Binding Domain In Complex With (S)-Glutamate Length = 258 Back     alignment and structure
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer With Ubp310 At 1.74 Angstroms Resolution Length = 258 Back     alignment and structure
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In Complex With Glutamate At 2.1 Angstrom Resolution Length = 258 Back     alignment and structure
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human Ionotropic Glutamate Receptor, Glur5, In Complex With Glutamate Length = 256 Back     alignment and structure
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In Complex With The Agonist 4-Ahcp Length = 258 Back     alignment and structure
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand- Binding Core In Complex With (S)-Glutamate Length = 257 Back     alignment and structure
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa Subunit Glur2 Bound To Glutamate Length = 279 Back     alignment and structure
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With Symmetric Sulfonamide Containing Potentiator Length = 292 Back     alignment and structure
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And Symmetrical Carboxyl Containing Potentiator Length = 280 Back     alignment and structure
>pdb|2XX7|A Chain A, Crystal Structure Of 1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3- (Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In Complex With The Ligand Binding Domain Of The Rat Glua2 Receptor And Glutamate At 2.2a Resolution. Length = 291 Back     alignment and structure
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain Complex With Glutamate At 1.37 Angstrom Resolution Length = 248 Back     alignment and structure
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core (Glur2) Complexed With Kainate Length = 279 Back     alignment and structure
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75 Angstrom Resolution Length = 398 Back     alignment and structure
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C) OF THE Ligand Binding Domain Of Glua2 Length = 258 Back     alignment and structure
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3- Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex With The Ligand Binding Domain Of The Human Glua2 Receptor Length = 263 Back     alignment and structure
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione Sulfonamide Bound To Human Glur2: A Novel Class Of Competitive Ampa Receptor Antagonists With Oral Activity Length = 263 Back     alignment and structure
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate Receptor In Complex With An Allosteric Modulator Length = 263 Back     alignment and structure
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The Allosteric Modulator, Althiazide Length = 258 Back     alignment and structure
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j) In Complex With Bromo-Willardiine At 1.8 Angstroms Resolution Length = 263 Back     alignment and structure
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j) In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution. Crystallization In The Presence Of Lithium Sulfate. Length = 261 Back     alignment and structure
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex With Kainate Length = 263 Back     alignment and structure
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j- N775s) In Complex With Cyclothiazide (Ctz) As Well As Glutamate At 1.8 A Resolution Length = 263 Back     alignment and structure
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j- Y702f) In Complex With Br-hibo At 1.73 A Resolution Length = 263 Back     alignment and structure
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A Resolution Length = 263 Back     alignment and structure
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j) In Complex With Kainate At 2.0 A Resolution Length = 263 Back     alignment and structure
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C) OF THE Ligand Binding Domain Of Glua2 Length = 258 Back     alignment and structure
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In Complex With (R)-5-Hpca At 2.1 A Resolution Length = 260 Back     alignment and structure
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In Complex With (S)-7-Hpca At 2.5 A Resolution Length = 261 Back     alignment and structure
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa Subunit Glur2 Bound To Ubp277 Length = 258 Back     alignment and structure
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j) T686s Mutant In Complex With Glutamate At 1.7 Resolution Length = 263 Back     alignment and structure
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j) T686a Mutant In Complex With Quisqualate At 2.1 Resolution Length = 263 Back     alignment and structure
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying Desensitization In An Ionotropic Glutamate Receptor: Structure Of S729c Mutant Length = 259 Back     alignment and structure
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying Desensitization In An Ionotropic Glutamate Receptor: Structure Of G725c Mutant Length = 259 Back     alignment and structure
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j- Y450w) Mutant In Complex With The Partial Agonist Kainic Acid At 2.1 A Resolution Length = 263 Back     alignment and structure
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain, RG UNEDITED. Length = 261 Back     alignment and structure
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate Receptor In Complex With An Allosteric Modulator Length = 263 Back     alignment and structure
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain (S1s2j-L483y- N754s) In Complex With Glutamate And Bpam-97 At 1.95 A Resolution Length = 263 Back     alignment and structure
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j) With The L483y And L650t Mutations And In Complex With Ampa Length = 263 Back     alignment and structure
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand Binding Core Mutant (S1s2j-L483y) In Complex With Ampa At 2.3 Resolution Length = 263 Back     alignment and structure
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding Core Mutant At 1.54 Angstroms Resolution Length = 262 Back     alignment and structure
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex With Glycine At 1.58 Angstrom Resolution Length = 294 Back     alignment and structure
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex With Glycine At 1.58 Angstrom Resolution Length = 292 Back     alignment and structure
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In Complex With Glutamate Length = 284 Back     alignment and structure
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic Protein From Burkholderia Pseudomallei In Complex With Glutamine Length = 249 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query806
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 1e-153
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 1e-68
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 1e-62
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 1e-57
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 7e-57
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 1e-53
3o21_A389 Glutamate receptor 3; periplasmatic binding protei 5e-50
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 2e-49
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 9e-49
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 4e-43
1dp4_A435 Atrial natriuretic peptide receptor A; periplasmic 4e-41
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 3e-29
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 1e-27
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 3e-27
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 1e-26
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 1e-25
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 6e-17
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 6e-17
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 2e-16
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 6e-11
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 1e-14
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 2e-11
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 2e-14
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 4e-12
1usg_A346 Leucine-specific binding protein; leucine-binding 5e-14
3sg0_A386 Extracellular ligand-binding receptor; structural 3e-13
3ipc_A356 ABC transporter, substrate binding protein (amino; 4e-13
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 4e-13
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 5e-13
3lop_A364 Substrate binding periplasmic protein; protein str 7e-13
3snr_A362 Extracellular ligand-binding receptor; structural 1e-12
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 1e-12
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 5e-06
3h5l_A419 Putative branched-chain amino acid ABC transporter 2e-12
4evq_A375 Putative ABC transporter subunit, substrate-bindi 3e-12
3i45_A387 Twin-arginine translocation pathway signal protei; 1e-11
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 2e-11
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 1e-10
3eaf_A391 ABC transporter, substrate binding protein; PSI2, 2e-11
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 3e-11
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 2e-07
3k4u_A245 Binding component of ABC transporter; structural g 7e-11
3k4u_A245 Binding component of ABC transporter; structural g 4e-05
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 9e-11
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 2e-07
3lkb_A392 Probable branched-chain amino acid ABC transporter 1e-10
3hut_A358 Putative branched-chain amino acid ABC transporter 1e-10
4eyg_A368 Twin-arginine translocation pathway signal; PSI-bi 3e-10
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 6e-10
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 5e-07
2o1m_A258 Probable amino-acid ABC transporter extracellular- 9e-10
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 1e-09
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 1e-06
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 2e-09
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 8e-04
3qax_A268 Probable ABC transporter arginine-binding protein; 2e-09
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 3e-09
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 1e-04
3td9_A366 Branched chain amino acid ABC transporter, peripl 5e-09
3del_B242 Arginine binding protein; alpha and beta protein ( 1e-08
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 1e-08
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 1e-07
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 1e-08
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 6e-06
3n0w_A379 ABC branched chain amino acid family transporter, 2e-08
3hv1_A268 Polar amino acid ABC uptake transporter substrate 2e-07
3hv1_A268 Polar amino acid ABC uptake transporter substrate 1e-04
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 2e-07
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 1e-04
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 4e-07
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 2e-04
3tql_A227 Arginine-binding protein; transport and binding pr 5e-07
3tql_A227 Arginine-binding protein; transport and binding pr 1e-04
4eq9_A246 ABC transporter substrate-binding protein-amino A 5e-07
4eq9_A246 ABC transporter substrate-binding protein-amino A 1e-06
3n0x_A374 Possible substrate binding protein of ABC transpo 5e-07
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 1e-06
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 6e-05
3i09_A375 Periplasmic branched-chain amino acid-binding Pro; 4e-06
4f06_A371 Extracellular ligand-binding receptor; PSI-biology 6e-06
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 7e-06
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 3e-04
3kzg_A237 Arginine 3RD transport system periplasmic binding 1e-05
3kzg_A237 Arginine 3RD transport system periplasmic binding 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2yln_A283 Putative ABC transporter, periplasmic binding Pro 2e-05
2yln_A283 Putative ABC transporter, periplasmic binding Pro 2e-05
2q88_A257 EHUB, putative ABC transporter amino acid-binding 2e-05
2q88_A257 EHUB, putative ABC transporter amino acid-binding 8e-05
1pea_A385 Amidase operon; gene regulator, receptor, binding 4e-05
2vha_A287 Periplasmic binding transport protein; periplasmic 5e-05
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 7e-05
1xt8_A292 Putative amino-acid transporter periplasmic solut 2e-04
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 Back     alignment and structure
 Score =  466 bits (1201), Expect = e-153
 Identities = 141/796 (17%), Positives = 277/796 (34%), Gaps = 85/796 (10%)

Query: 1   MISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAI 60
            I+     L V  ++ +           P+ I+          A+  LI++Y W +   +
Sbjct: 75  TITSFCGTLHVSFITPSFPTDG----THPFVIQMRPD---LKGALLSLIEYYQWDKFAYL 127

Query: 61  YVDDDYGRNGISALSNMLEKNMAKVSYK--LPLPVQFNQHDITVLLNNSKPLGPRVYVVH 118
           Y D D G + + A+ +   +   +V+      +           L  + +    R  ++ 
Sbjct: 128 Y-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD 186

Query: 119 VSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTP 178
              D    I      +      Y ++  +      +        +      V G +    
Sbjct: 187 CERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGA-----EVSGFQIVDY 241

Query: 179 DSIPKKAFLSRWSGMQQK---GLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSAS 235
           D      F+ RWS +++K   G  +A +       YD V  +  +      +        
Sbjct: 242 DDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEIS--- 298

Query: 236 HELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINID 295
                  A          +  G  + R L Q    GLSG ++F+Q+   ++   +++ + 
Sbjct: 299 ---RRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELK 355

Query: 296 KMEIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNA 355
                ++GYW +     +   +T               Q         E+P   + A++ 
Sbjct: 356 TNGPRKIGYWSEVDKMVLTEDDT-----------SGLEQKTVVVTTILESPYVMMKANH- 403

Query: 356 RPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGD----GL 411
                                 + + +GYC+D+  E  K   +         G       
Sbjct: 404 -----------------AALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDA 446

Query: 412 SNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVI-VAPINNHKASAW 470
               ++G+V  +     D A+  + I   R +++DFS+P++S G+ I +      K   +
Sbjct: 447 DTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVF 506

Query: 471 VFLKPFTVEMWCVTAASFVMIAVVIWILEH--------------RVNDDFRGPPRRQIAT 516
            FL P   E+W     +++ ++VV++++                R            I  
Sbjct: 507 SFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFN 566

Query: 517 MFLFSFSTLFKTNQEATVSSL-GRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKG 575
              FS     +   + +  SL GR V  VW F  ++I SSYTA+L++ LTV+++ + ++ 
Sbjct: 567 SLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES 626

Query: 576 IESLITNDW-PIGYQVGSFAYSYLSDSLRIQKSRLIS-------LGSPEDYERALRQGPR 627
            E L        G         +   S      ++ +                 + +  +
Sbjct: 627 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRK 686

Query: 628 NGGVAAIVDELPYVQLFLSNQT-DFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSE 686
           + G  A + E    +     +  D   +G      G+G A  + S L   ++ A+LKLSE
Sbjct: 687 SKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSE 746

Query: 687 NGMLQKLHEKWFCKEG-CP-EERRQHSEPHQLRLISFWGLYLLCGTITFTAFLVFLLRMV 744
            G+L KL  KW+  +G C  ++     +   L L +  G++ +       A LV L+   
Sbjct: 747 QGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFC 806

Query: 745 CQYVRYKQQQMHPHSP 760
               R + ++M    P
Sbjct: 807 Y-KSRAEAKRMKGLVP 821
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433 Back     alignment and structure
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395 Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384 Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393 Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384 Back     alignment and structure
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389 Back     alignment and structure
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376 Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441 Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Length = 364 Back     alignment and structure
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435 Back     alignment and structure
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Length = 496 Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} PDB: 2e4z_A* Length = 481 Back     alignment and structure
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Length = 555 Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Length = 479 Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Back     alignment and structure
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Length = 346 Back     alignment and structure
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Length = 386 Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Length = 356 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 Back     alignment and structure
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Length = 364 Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Length = 239 Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Length = 239 Back     alignment and structure
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Length = 419 Back     alignment and structure
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Length = 375 Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Length = 387 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 Back     alignment and structure
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Length = 391 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Length = 249 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Length = 249 Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} Length = 245 Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} Length = 245 Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Length = 228 Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Length = 228 Back     alignment and structure
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Length = 392 Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Length = 358 Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Length = 368 Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Length = 233 Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Length = 233 Back     alignment and structure
>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} Length = 258 Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Length = 226 Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Length = 226 Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Length = 234 Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Length = 234 Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Length = 268 Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Length = 259 Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Length = 259 Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Length = 366 Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} Length = 242 Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Length = 272 Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Length = 272 Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Length = 271 Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Length = 271 Back     alignment and structure
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Length = 379 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Length = 268 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Length = 268 Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Length = 229 Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Length = 229 Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Length = 239 Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Length = 239 Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} Length = 227 Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} Length = 227 Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Length = 246 Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Length = 246 Back     alignment and structure
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B Length = 374 Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Length = 291 Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Length = 291 Back     alignment and structure
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Length = 375 Back     alignment and structure
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* Length = 371 Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} Length = 232 Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} Length = 232 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} Length = 237 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} Length = 237 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Length = 283 Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Length = 283 Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Length = 257 Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Length = 257 Back     alignment and structure
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Length = 385 Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Length = 287 Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Length = 267 Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Length = 292 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 806
d1ewka_477 c.93.1.1 (A:) Metabotropic glutamate receptor subt 3e-30
d1jdpa_401 c.93.1.1 (A:) Hormone binding domain of the atrial 7e-28
d1dp4a_425 c.93.1.1 (A:) Hormone binding domain of the atrial 4e-22
d1pb7a_289 c.94.1.1 (A:) N-methyl-D-aspartate receptor subuni 2e-13
d1pb7a_289 c.94.1.1 (A:) N-methyl-D-aspartate receptor subuni 8e-06
d1mqia_260 c.94.1.1 (A:) Glutamate receptor ligand binding co 2e-12
d1mqia_260 c.94.1.1 (A:) Glutamate receptor ligand binding co 3e-05
d2f34a1246 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor li 8e-12
d2a5sa1277 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate 6e-10
d2a5sa1277 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate 8e-10
d1ii5a_226 c.94.1.1 (A:) Glutamate receptor ligand binding co 5e-06
d1wdna_223 c.94.1.1 (A:) Glutamine-binding protein {Escherich 6e-06
d1wdna_223 c.94.1.1 (A:) Glutamine-binding protein {Escherich 8e-05
d1usga_346 c.93.1.1 (A:) Leucine-binding protein {Escherichia 6e-05
d1lsta_238 c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding 9e-05
d1xt8a1248 c.94.1.1 (A:10-257) Putative amino-acid transporte 3e-04
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  123 bits (308), Expect = 3e-30
 Identities = 58/348 (16%), Positives = 127/348 (36%), Gaps = 54/348 (15%)

Query: 1   MISEVANGLKVPLVSFAATDPTLS-ALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIA 59
            +  +     +P ++++AT   LS    + YF+R   SD+ Q  AM D++  Y W  V A
Sbjct: 135 QVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSA 194

Query: 60  IYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGP--RVYVV 117
           ++ + +YG +G+ A   +  +    +++   +     +     LL   +   P  RV V 
Sbjct: 195 VHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVC 254

Query: 118 HVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATL----ESFSKMNQTSLRILQGVVG- 172
                    + +  ++L ++    +  +  W                  ++++    V  
Sbjct: 255 FCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRS 314

Query: 173 ----LRQHTPDSIPKKAFLSR-WSGMQQKGLVSAGL---------------------NTY 206
                 +   D+  +  +    W    Q  L    L                     ++ 
Sbjct: 315 FDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSK 374

Query: 207 GLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQ 266
             +  + ++A+A  +    +                      + +K  DG   LL  L++
Sbjct: 375 MGFVINAIYAMAHGLQNMHHA------------LCPGHVGLCDAMKPIDGRK-LLDFLIK 421

Query: 267 TNFTGLSG-QVQFNQDRNIVSRGYDVINI-----DKMEIHRVGYWFDG 308
           ++F G+SG +V F++  +   R YD++N+     ++ +   VG W +G
Sbjct: 422 SSFVGVSGEEVWFDEKGDAPGR-YDIMNLQYTEANRYDYVHVGTWHEG 468
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425 Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 289 Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 289 Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260 Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260 Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Length = 246 Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277 Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277 Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Length = 226 Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Length = 223 Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Length = 223 Back     information, alignment and structure
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Length = 238 Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Length = 248 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query806
d1ewka_477 Metabotropic glutamate receptor subtype 1 {Rat (Ra 100.0
d1dp4a_425 Hormone binding domain of the atrial natriuretic p 100.0
d1jdpa_401 Hormone binding domain of the atrial natriuretic p 100.0
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.98
d1usga_346 Leucine-binding protein {Escherichia coli [TaxId: 99.98
d1pb7a_289 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.97
d1qo0a_373 Amide receptor/negative regulator of the amidase o 99.96
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 99.95
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 99.95
d1mqia_260 Glutamate receptor ligand binding core {Rat (Rattu 99.95
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 99.94
d1lsta_238 Lysine-,arginine-,ornithine-binding (LAO) protein 99.92
d2f34a1246 Glutamate receptor ligand binding core {Rat (Rattu 99.91
d3ckma1317 YraM C-terminal domain {Haemophilus influenzae [Ta 99.88
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 97.93
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 96.06
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 94.26
d1vlja_398 NADH-dependent butanol dehydrogenase A (TM0820) {T 94.15
d1rrma_385 Lactaldehyde reductase FucO {Escherichia coli [Tax 92.76
d1al3a_237 Cofactor-binding fragment of LysR-type protein Cys 92.75
d2nzug1275 Glucose-resistance amylase regulator CcpA, C-termi 92.49
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 92.24
d2fyia1220 LysR-type regulatory protein Cbl {Escherichia coli 91.75
d1o2da_359 Alcohol dehydrogenase TM0920 {Thermotoga maritima 86.54
d1jq5a_366 Glycerol dehydrogenase {Bacillus stearothermophilu 85.55
d1jyea_271 Lac-repressor (lacR) core (C-terminal domain) {Esc 84.72
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=0  Score=326.29  Aligned_cols=288  Identities=19%  Similarity=0.350  Sum_probs=236.2

Q ss_pred             HHCCCCCCCCCEEECCCCCCCCCCC-CCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             7400366987288243699786657-899538710793889999999997819829999998297641159999999985
Q 003633            2 ISEVANGLKVPLVSFAATDPTLSAL-QFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEK   80 (806)
Q Consensus         2 va~i~~~~~vP~Is~~at~p~ls~~-~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l~~   80 (806)
                      ++.+++.+++|+|||+|++|.|+++ +||+|+||+|+|..|+.|+++++++|+|++|++||.||+||+.+.+.|.+.+.+
T Consensus       136 va~~~~~~~iP~IS~~ats~~lsd~~~yp~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~  215 (477)
T d1ewka_         136 VQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQ  215 (477)
T ss_dssp             HHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEECCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             88875212582633555884556645488649800661346899999999729868999985164577889999999987


Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHCCCC--CCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             781899975369999946799999730889--980999964961489999999980785588289970731000133446
Q 003633           81 NMAKVSYKLPLPVQFNQHDITVLLNNSKPL--GPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSK  158 (806)
Q Consensus        81 ~g~~i~~~~~~~~~~~~~~~~~~l~~i~~~--~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~~~~~~  158 (806)
                      .|+||.+...++...+..++..++.+++..  .+||||+++....+..++++|.++||++ .+.|++++++.......  
T Consensus       216 ~~i~v~~~~~i~~~~~~~~~~~~l~~l~~~~~~~rVIv~~~~~~~~~~ll~~a~~~g~~g-~~~~i~~~~~~~~~~~~--  292 (477)
T d1ewka_         216 EGLCIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI--  292 (477)
T ss_dssp             HTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH--
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCC-CCEEEEECCCCCCHHHC--
T ss_conf             693799986135777602678888877641357508998147899999999999757657-74399963434531220--


Q ss_pred             CCHHHHHHCCCEEEEEEECCCCHHHHHHH---------------HHHHHHCCCCC---------------------CCCC
Q ss_conf             88335531162289997179990347799---------------99762014888---------------------7778
Q 003633          159 MNQTSLRILQGVVGLRQHTPDSIPKKAFL---------------SRWSGMQQKGL---------------------VSAG  202 (806)
Q Consensus       159 ~~~~~~~~~~gvl~~~~~~~~~~~~~~f~---------------~~~~~~~~~~~---------------------~~~~  202 (806)
                        ........|.+++.+..+..+++++|.               +.|+..|++..                     ....
T Consensus       293 --~~~~~~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~n~~~~~~w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (477)
T d1ewka_         293 --EGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYV  370 (477)
T ss_dssp             --TTCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCC
T ss_pred             --CCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf             --344433576257653243316689999854756577886799999998588765223467652223452221345334


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEE-EEEEECC
Q ss_conf             862034445579899999999876067542478889987656433334544575589999977056677425-3999319
Q 003633          203 LNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSG-QVQFNQD  281 (806)
Q Consensus       203 ~~~~~~~aYDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~~~l~~~~f~g~tG-~i~fd~~  281 (806)
                      ...++.++|||||++|+||++++++...            +....|+....++ |++|++.|++++|+|++| ++.||++
T Consensus       371 ~~~~~~~~yDAV~a~A~AL~~~~~~~~~------------~~~~~~~~~~~~~-~~~l~~~l~~v~F~G~tG~~v~Fd~n  437 (477)
T d1ewka_         371 QDSKMGFVINAIYAMAHGLQNMHHALCP------------GHVGLCDAMKPID-GRKLLDFLIKSSFVGVSGEEVWFDEK  437 (477)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHST------------TCSSCCGGGSSCC-HHHHHHHHHTCEEECTTSCEEECCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCC------------CCCCCCCCCCCCC-HHHHHHHHHCCEEECCCCCEEEECCC
T ss_conf             5368999999999999999999872377------------8777665787689-99999998237417899998997999


Q ss_pred             CCEECCCEEEEEEEC---C--CEEEEEEEECC
Q ss_conf             970002189999225---7--26999886289
Q 003633          282 RNIVSRGYDVINIDK---M--EIHRVGYWFDG  308 (806)
Q Consensus       282 G~~~~~~y~I~n~~~---~--~~~~vG~w~~~  308 (806)
                      ||+ .+.|+|+|++.   +  ++++||+|++.
T Consensus       438 Gd~-~~~y~I~n~q~~~~~~~~~~~VG~w~~~  468 (477)
T d1ewka_         438 GDA-PGRYDIMNLQYTEANRYDYVHVGTWHEG  468 (477)
T ss_dssp             SCC-CCCEEEEEEEECSSSCEEEEEEEEEETT
T ss_pred             CCC-CCEEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf             980-3307999999878996889998998489
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Back     information, alignment and structure
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure