Citrus Sinensis ID: 003638

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800------
Protein Sequence
MTWHQPRLFRVLCDLVNGEGPIITTKFEVFEASLLQFYEKVMAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASRSSRTTLSESVPPVDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPILPLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQLAVTVTPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGHNKSTCKETL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHcccccEEEEEEEHHHHHHHHHHHcccccccEEEEEEEccEEEEcccccEEEEcccEEEEEEcccccHHHHHHHHHHHccccccEEEEEEEEEcccEEEEEEcccHHHHHHHHHccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHEEEEEEEEEcccEEEEEEEEccccccEEEEEEEccccEEEEEEccccccccccccccccccccHHHHHHEEEEEEEcccccHHcHHHHHHHHHcEEccHHHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHccccEEEEcccccccccEEEEEccccHHccccccccccccccccccccccccEEEEEEEcccccccEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHccccccccEEEEEEHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHccccEEcccccccEEEEcccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccEEEEEccccEEEEEccEEEEEEccccEEcccccccccccccHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHcccccEEEcHHHHHHHHHHHHcccHccccEEEEEEEcccEEEEccccccEEccccccEEcccccccHHHHHHHHHHHccccccEEEEEEEEEcccccEEEEcccccHHHHHHcccccccEEEEEEEEccccccEEEEccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccEEEEcEEcccHHHHHHHHHHHHHHcccEEEEEEccccEEEEEEEcccccEEEEEEEcccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHEEEHHHHHHHHHHccccEEEEEccEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEccccEEEEEEcEEEEEEEcccEccccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHcccccccccccccccccccEEEcccccccccccccccccEccccccccEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
MTWHQPRLFRVLCDlvngegpiittKFEVFEASLLQFYEKVMAGDKIIAICQlggefetdkdgslsykggdahaidvdeqmkfndFKTEVAEMFNCSFNAILLKYflpgnkktlitisndKDLQRMIKfngdsattDVFVILEEivepdvsnmpasrssrttlsesvppvdvvddmvdgniiplgaslddvvdtnhidmniddtqidlpdeispilpltgsndekhVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFkykkndshrvtvkckaegcpwrihasrLSTTQLICIkkmnpthtcegavvtngnqaTRSWVASIIKEKlkvfpnykpkdivNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERimetnpgslatfttkedssfhrLFVSFHASLYGfiqgcrpllfldsvplkskyQGTLLAAtaadgddgvfPVAFAVVDAETNDDWHWFLLQLKSalstatcpitfvaDKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFyaaayaptpeeFERSIESIKSISLEAYNWILQSEYLNWANAFFQgarynhmtsNFGELFYswasdanelpiTQMVDVIRGKIMELIYTRrtdsnqwltrltpsmeEKLEKESLKVRSLQVLLSAgrtfevrgdsievvdidhwdcsckgwqltglpcchaiavlscigcspydycsryfmtesyrstysesinpipdfdrpamkdssqlavtvtppptrrppgrpttkkigtqDVMKRQlqcskckglghnkstcketl
Flexible Loop (DISEMBL)
MTWHQPRLFRVLCDLVNGEGPIITTKFEVFEASLLQFYEKVMAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEivepdvsnmpasrssrttlsesvppvDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPILPLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFkykkndshrvtVKCKaegcpwrihasrLSTTQLICIKKMNPTHTCEGAvvtngnqatRSWVASIIKeklkvfpnykpKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIytrrtdsnqwltrlTPSMEEKLEKESLKVRSLQVLLsagrtfevrgdsIEVVDIDHWDCSCKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQLavtvtppptrrppgrpttkkigtqdvMKRQlqcskckglghnkstcketl
Low Complexity Region (SEG)
MTWHQPRLFRVLCDLVNGEGPIITTKFEVFEASLLQFYEKVMAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASRSSRTTLSESvppvdvvddmvdGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPILPLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQgtllaataadgddgVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTRRTDSNQWLTRLTPsmeeklekeslkvrslQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQLAvtvtppptrrppgrpttKKIGTQDVMKRQLQCSKCKGLGHNKSTCKETL
Disordered region (IsUnstruct)
****QPRLFRVLCDLVNGEGPIITTKFEVFEASLLQFYEKVMAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVE**********************VDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPILPLT******HVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTRRTDSNQWLTRL*************KVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTY***********************************************************************
Disordered Region (DISOPRED)
****QPRLFRVLCDLVNGEGPIITTKFEVFEASLLQFYEKVMAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPA************PPVDVVDDMVDGNIIPLGA*****VDTNHIDMNIDDTQIDLPD********************QQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQLAVT********************************CKGLGHNK*TCK***
Disordered Region (DISEMBL)
MTWHQPRLFRVLCDLVNGEGPIITTKFEVFEASLLQFYEKVMAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDV****************VPPVDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPILPLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQLAVTVTPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGH*********
Disordered Region (DISPRO)
*TWHQPRLFRVLCDLVNGEGPIITTKFEVFEASLLQFYEKVMAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPA*********************************************************************KHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQLAVTVTPPPT********TK******VMKRQLQCSKCKGL**NKSTC****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTWHQPRLFRVLCDLVNGEGPIITTKFEVFEASLLQFYEKVMAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASRSSRTTLSESVPPVDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPILPLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQLAVTVTPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGHNKSTCKETL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	806
225450448	768	PREDICTED: uncharacterized protein LOC10	0.944	0.990	0.829	0.0
147780251	1076	hypothetical protein VITISV_037761 [Viti	0.913	0.684	0.831	0.0
449456080	770	PREDICTED: uncharacterized protein LOC10	0.941	0.985	0.781	0.0
449510833	770	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.941	0.985	0.781	0.0
356534979	759	PREDICTED: uncharacterized protein LOC10	0.934	0.992	0.738	0.0
356575297	758	PREDICTED: uncharacterized protein LOC10	0.934	0.993	0.742	0.0
225432189	746	PREDICTED: uncharacterized protein LOC10	0.919	0.993	0.693	0.0
147865779	1147	hypothetical protein VITISV_020810 [Viti	0.903	0.634	0.674	0.0
356548025	748	PREDICTED: uncharacterized protein LOC10	0.924	0.995	0.657	0.0
356565507	748	PREDICTED: uncharacterized protein LOC10	0.924	0.995	0.659	0.0

>gi|225450448|ref|XP_002276424.1| PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera]

 Score = 1309 bits (3388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/772 (82%), Positives = 701/772 (90%), Gaps = 11/772 (1%)

Query: 42  MAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAI 101
           MAG KIIAICQ GGEFE DKDGSLSY+GGDAHAID+D+QMKFN+FK EVAEMFNCS + +
Sbjct: 1   MAGKKIIAICQSGGEFEADKDGSLSYRGGDAHAIDIDDQMKFNEFKMEVAEMFNCSISTM 60

Query: 102 LLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASRSSRT 161
            +KYFLP NKKTLITISNDKDL+RMIKF+ DS T D++V+ EE+V  DVSNMPASRSSRT
Sbjct: 61  SIKYFLPKNKKTLITISNDKDLKRMIKFHVDSVTVDIYVMTEEVVALDVSNMPASRSSRT 120

Query: 162 TLSESVPPVD----VVDDMVDGNIIP---LGASLDDVVDTNHIDMNIDDTQIDLPDEISP 214
           TLSE+V PVD    + DDMVD    P   LG  LD V DT H+D+   D QI +P+EISP
Sbjct: 121 TLSEAVVPVDAPLDMKDDMVDDTTYPDVSLGLPLDVVDDTTHVDV---DAQITMPNEISP 177

Query: 215 ILPLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHR 274
           +LPL+ SN+EKHVK AQQWQNTITGVGQRFS VHEFRE LRKYAIAHQFAF+YKKNDSHR
Sbjct: 178 VLPLSISNEEKHVKAAQQWQNTITGVGQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHR 237

Query: 275 VTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKL 334
           VTVKCKAEGCPWRIHASRLSTTQLICIKKMN THTCEGAVVT G QATRSWVASII +KL
Sbjct: 238 VTVKCKAEGCPWRIHASRLSTTQLICIKKMNATHTCEGAVVTTGYQATRSWVASIIMDKL 297

Query: 335 KVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMET 394
           KVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAY+QLP FCE+IMET
Sbjct: 298 KVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMET 357

Query: 395 NPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAAD 454
           NPGS ATFTTKEDSSFHRLFVSFHASLYGF QGCRPLLFLDS+ LKSKYQGTLLAATAAD
Sbjct: 358 NPGSFATFTTKEDSSFHRLFVSFHASLYGFQQGCRPLLFLDSISLKSKYQGTLLAATAAD 417

Query: 455 GDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGS 514
           GDDGVFPVAF+VVDAET+D+WHWFLLQLKSAL T+  PITFVAD++KGLRESIAEIF+GS
Sbjct: 418 GDDGVFPVAFSVVDAETDDNWHWFLLQLKSALPTSR-PITFVADREKGLRESIAEIFQGS 476

Query: 515 FHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAY 574
           FHGYCLRYLTEQL+KDLKGQFSHEVKRLM+EDFYAAAYAP PE F+R +E+IKSISLEAY
Sbjct: 477 FHGYCLRYLTEQLLKDLKGQFSHEVKRLMVEDFYAAAYAPRPESFQRCLETIKSISLEAY 536

Query: 575 NWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIY 634
           NW++QSE +NWANAFFQ ARYNHM SNFGELFYSWAS+A+ELPITQMVDVIRGKIMEL +
Sbjct: 537 NWLIQSEPMNWANAFFQSARYNHMASNFGELFYSWASEAHELPITQMVDVIRGKIMELFF 596

Query: 635 TRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSC 694
           TRRTDSNQW+TRLTPSMEEKLEKE++KVR LQVLLS G TFEVRGD+IEVVDIDHWDCSC
Sbjct: 597 TRRTDSNQWMTRLTPSMEEKLEKETVKVRPLQVLLSGGNTFEVRGDTIEVVDIDHWDCSC 656

Query: 695 KGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSS 754
           KGWQLTGLPCCHAIAV+SCIG SPY+YCSRYF TESYR TYSES++PIP+ DRP  KDSS
Sbjct: 657 KGWQLTGLPCCHAIAVISCIGQSPYEYCSRYFTTESYRLTYSESVHPIPNVDRPMEKDSS 716

Query: 755 QLAVTVTPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGHNKSTCKETL 806
            +AVTVTPPPTRRPPGRPTTK+ G+Q+V+KRQLQCS+CKG+GHNKSTCKE L
Sbjct: 717 LVAVTVTPPPTRRPPGRPTTKRFGSQEVVKRQLQCSRCKGVGHNKSTCKELL 768

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780251|emb|CAN65744.1| hypothetical protein VITISV_037761 [Vitis vinifera]

 Score = 1262 bits (3266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/747 (83%), Positives = 678/747 (90%), Gaps = 11/747 (1%)

Query: 42  MAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAI 101
           MAG KIIAICQ GGEFE DKDGSLSY+GGDAHAID+D+QMKFN+FK EVAEMFNCS + +
Sbjct: 1   MAGKKIIAICQSGGEFEADKDGSLSYRGGDAHAIDIDDQMKFNEFKMEVAEMFNCSISTM 60

Query: 102 LLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASRSSRT 161
            +KYFLP NKKTLITISNDKDL+RMIKF+ DS T D++V+ EE+V  DVSNMPASRSSRT
Sbjct: 61  SIKYFLPKNKKTLITISNDKDLKRMIKFHVDSVTVDIYVMTEEVVALDVSNMPASRSSRT 120

Query: 162 TLSESVPPVD----VVDDMVDGNIIP---LGASLDDVVDTNHIDMNIDDTQIDLPDEISP 214
           TLSE+V PVD    + DDMVD    P   LG  LD V DT H+D+   D QI +P+EISP
Sbjct: 121 TLSEAVVPVDAPLDMKDDMVDDTTYPDVSLGLPLDVVDDTTHVDV---DAQITMPNEISP 177

Query: 215 ILPLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHR 274
           +LPL+ SN+EKHVK AQQWQNTITGVGQRFS VHEFRE LRKYAIAHQFAF+YKKNDSHR
Sbjct: 178 VLPLSISNEEKHVKAAQQWQNTITGVGQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHR 237

Query: 275 VTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKL 334
           VTVKCKAEGCPWRIHASRLSTTQLICIKKMN THTCEGAVVT G QATRSWVASII +KL
Sbjct: 238 VTVKCKAEGCPWRIHASRLSTTQLICIKKMNATHTCEGAVVTTGYQATRSWVASIIMDKL 297

Query: 335 KVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMET 394
           KVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAY+QLP FCE+IMET
Sbjct: 298 KVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMET 357

Query: 395 NPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAAD 454
           NPGS ATFTTKEDSSFHRLFVSFHASLYGF QGCRPLLFLDS+ LKSKYQGTLLAATAAD
Sbjct: 358 NPGSFATFTTKEDSSFHRLFVSFHASLYGFQQGCRPLLFLDSISLKSKYQGTLLAATAAD 417

Query: 455 GDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGS 514
           GDDGVFPVAF+VVDAET+D+WHWFLLQLKSAL T+  PITFVAD++KGLRESIAEIF+GS
Sbjct: 418 GDDGVFPVAFSVVDAETDDNWHWFLLQLKSALPTSR-PITFVADREKGLRESIAEIFQGS 476

Query: 515 FHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAY 574
           FHGYCLRYLTEQL+KDLKGQFSHEVKRLM+EDFYAAAYAP PE F+R +ESIKSISLEAY
Sbjct: 477 FHGYCLRYLTEQLLKDLKGQFSHEVKRLMVEDFYAAAYAPRPESFQRCLESIKSISLEAY 536

Query: 575 NWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIY 634
           NW++QSE +NWANAFFQGARYNHM SNFGELFYSWAS+A+ELPITQMVDVIRGKIMEL +
Sbjct: 537 NWLIQSEPMNWANAFFQGARYNHMASNFGELFYSWASEAHELPITQMVDVIRGKIMELFF 596

Query: 635 TRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSC 694
           TRRTDSNQW+TRLTPSMEEKLEKE++KVR LQVLLS G TFEVRGD+IEVVDIDHWDCSC
Sbjct: 597 TRRTDSNQWMTRLTPSMEEKLEKETVKVRPLQVLLSGGNTFEVRGDTIEVVDIDHWDCSC 656

Query: 695 KGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSS 754
           KGWQLTGLPCCHAIAV+SCIG SPY+YCSRYF TESYR TYSES++PIP+ DRP  KDSS
Sbjct: 657 KGWQLTGLPCCHAIAVISCIGQSPYEYCSRYFTTESYRLTYSESVHPIPNVDRPMEKDSS 716

Query: 755 QLAVTVTPPPTRRPPGRPTTKKIGTQD 781
            +AVTVTPPPTRRPPGRPTTK+ G+Q+
Sbjct: 717 LVAVTVTPPPTRRPPGRPTTKRFGSQE 743

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456080|ref|XP_004145778.1| PREDICTED: uncharacterized protein LOC101203656 [Cucumis sativus]

 Score = 1236 bits (3197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/773 (78%), Positives = 677/773 (87%), Gaps = 14/773 (1%)

Query: 42  MAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAI 101
           MA  KIIAICQ GGEFET +DG LSY GGDAHAIDVD++MKFN+FK E+AEMFN   + +
Sbjct: 1   MAEKKIIAICQSGGEFETGRDGMLSYHGGDAHAIDVDDKMKFNEFKMEIAEMFNFDVDNV 60

Query: 102 LLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASRSSRT 161
            +KYFLPGN+KTLIT+SNDKDL+RM+KF+GDS T D+FVI+EE++ P++SN+PASRSSRT
Sbjct: 61  SIKYFLPGNRKTLITLSNDKDLKRMLKFHGDSTTVDIFVIMEEVMAPNISNLPASRSSRT 120

Query: 162 TLSESVPPVD-----VVDDMVDGNI---IPLGASLDDVVDTNHIDMNIDDTQIDLPDEIS 213
           TLSE+V PVD     VV  + D NI   IPL  +LD V DTN +        ID+  +I+
Sbjct: 121 TLSETVVPVDGTPLTVVHGIEDDNIESDIPLDGALDVVDDTNPLV-----NHIDIAGDIT 175

Query: 214 PILPLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSH 273
           PILPL GS+DEK+ K  QQWQNTITGVGQRFSSVHEFRE LRKYAIAHQFAF+YKKNDSH
Sbjct: 176 PILPLLGSSDEKNGKGVQQWQNTITGVGQRFSSVHEFRESLRKYAIAHQFAFRYKKNDSH 235

Query: 274 RVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEK 333
           RVTVKCKAEGCPWRIHASRLSTTQLICIKKMNP HTCEGAV T G+QATRSWVASI+KEK
Sbjct: 236 RVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPNHTCEGAVTTTGHQATRSWVASIVKEK 295

Query: 334 LKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIME 393
           LKVFPNYKPKDIV+DIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLP  C +IME
Sbjct: 296 LKVFPNYKPKDIVHDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPFLCGKIME 355

Query: 394 TNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAA 453
           TNPGSLAT  TKEDS+FHRLFVSFHASL GF QGCRPL+FLDS+PLKSKYQGTLLAATAA
Sbjct: 356 TNPGSLATCDTKEDSTFHRLFVSFHASLSGFQQGCRPLIFLDSIPLKSKYQGTLLAATAA 415

Query: 454 DGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKG 513
           DGDDG FPVAF+VVD E++D+W WFLLQLKSALST +C ITFVAD+QKGL  SIA IFKG
Sbjct: 416 DGDDGFFPVAFSVVDTESDDNWSWFLLQLKSALST-SCSITFVADRQKGLTVSIANIFKG 474

Query: 514 SFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEA 573
           SFHGYCLRYLTEQL++DLKGQFSHEVKRL++EDFYAAAYAP PE F+R +ESIKSISL+A
Sbjct: 475 SFHGYCLRYLTEQLIRDLKGQFSHEVKRLIVEDFYAAAYAPKPENFQRCVESIKSISLDA 534

Query: 574 YNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELI 633
           YNWILQSE  NWANAFF+GARYNHMTSNFGE+FYSW S+A+ELPITQMVDVIR KIMELI
Sbjct: 535 YNWILQSEPQNWANAFFEGARYNHMTSNFGEMFYSWVSEAHELPITQMVDVIRVKIMELI 594

Query: 634 YTRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCS 693
           Y RR DS+QWLTRLTPSMEEKLEKE  K  +L VL+SAG TFEVRGDSIEVVD+DHWDC+
Sbjct: 595 YARRADSDQWLTRLTPSMEEKLEKEGHKAHNLHVLISAGSTFEVRGDSIEVVDVDHWDCT 654

Query: 694 CKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDS 753
           CKGWQLTGLPC HAIAVLSC+G SP+D+CSRYF TESYR TYS+S++P+P  D P  K S
Sbjct: 655 CKGWQLTGLPCSHAIAVLSCLGRSPFDFCSRYFTTESYRLTYSDSVHPVPQVDLPIHKSS 714

Query: 754 SQLAVTVTPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGHNKSTCKETL 806
            Q +VTVTPPPTRRPPGRPT+K+ G+ +VMKRQLQCS+CKGLGHNKSTCK+ L
Sbjct: 715 LQASVTVTPPPTRRPPGRPTSKRYGSPEVMKRQLQCSRCKGLGHNKSTCKQLL 767

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510833|ref|XP_004163775.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101203656 [Cucumis sativus]

 Score = 1235 bits (3196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/773 (78%), Positives = 677/773 (87%), Gaps = 14/773 (1%)

Query: 42  MAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAI 101
           MA  KIIAICQ GGEFET +DG LSY GGDAHAIDVD++MKFN+FK E+AEMFN   + +
Sbjct: 1   MAEKKIIAICQSGGEFETGRDGMLSYHGGDAHAIDVDDKMKFNEFKMEIAEMFNFDVDNV 60

Query: 102 LLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASRSSRT 161
            +KYFLPGN+KTLIT+SNDKDL+RM+KF+GDS T D+FVI+EE++ P++SN+PASRSSRT
Sbjct: 61  SIKYFLPGNRKTLITLSNDKDLKRMLKFHGDSTTVDIFVIMEEVMAPNISNLPASRSSRT 120

Query: 162 TLSESVPPVD-----VVDDMVDGNI---IPLGASLDDVVDTNHIDMNIDDTQIDLPDEIS 213
           TLSE+V PVD     VV  + D NI   IPL  +LD V DTN +        ID+  +I+
Sbjct: 121 TLSETVVPVDGTPLTVVHGIEDDNIESDIPLDGALDVVDDTNPLV-----NHIDIAGDIT 175

Query: 214 PILPLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSH 273
           PILPL GS+DEK+ K  QQWQNTITGVGQRFSSVHEFRE LRKYAIAHQFAF+YKKNDSH
Sbjct: 176 PILPLLGSSDEKNGKGVQQWQNTITGVGQRFSSVHEFRESLRKYAIAHQFAFRYKKNDSH 235

Query: 274 RVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEK 333
           RVTVKCKAEGCPWRIHASRLSTTQLICIKKMNP HTCEGAV T G+QATRSWVASI+KEK
Sbjct: 236 RVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPNHTCEGAVTTTGHQATRSWVASIVKEK 295

Query: 334 LKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIME 393
           LKVFPNYKPKDIV+DIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLP  C +IME
Sbjct: 296 LKVFPNYKPKDIVHDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPFLCGKIME 355

Query: 394 TNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAA 453
           TNPGSLAT  TKEDS+FHRLFVSFHASL GF QGCRPL+FLDS+PLKSKYQGTLLAATAA
Sbjct: 356 TNPGSLATCDTKEDSTFHRLFVSFHASLSGFQQGCRPLIFLDSIPLKSKYQGTLLAATAA 415

Query: 454 DGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKG 513
           DGDDG FPVAF+VVD E++D+W WFLLQLKSALST +C ITFVAD+QKGL  SIA IFKG
Sbjct: 416 DGDDGXFPVAFSVVDTESDDNWSWFLLQLKSALST-SCSITFVADRQKGLTVSIANIFKG 474

Query: 514 SFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEA 573
           SFHGYCLRYLTEQL++DLKGQFSHEVKRL++EDFYAAAYAP PE F+R +ESIKSISL+A
Sbjct: 475 SFHGYCLRYLTEQLIRDLKGQFSHEVKRLIVEDFYAAAYAPKPENFQRCVESIKSISLDA 534

Query: 574 YNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELI 633
           YNWILQSE  NWANAFF+GARYNHMTSNFGE+FYSW S+A+ELPITQMVDVIR KIMELI
Sbjct: 535 YNWILQSEPQNWANAFFEGARYNHMTSNFGEMFYSWVSEAHELPITQMVDVIRVKIMELI 594

Query: 634 YTRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCS 693
           Y RR DS+QWLTRLTPSMEEKLEKE  K  +L VL+SAG TFEVRGDSIEVVD+DHWDC+
Sbjct: 595 YARRADSDQWLTRLTPSMEEKLEKEGHKAHNLHVLISAGSTFEVRGDSIEVVDVDHWDCT 654

Query: 694 CKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDS 753
           CKGWQLTGLPC HAIAVLSC+G SP+D+CSRYF TESYR TYS+S++P+P  D P  K S
Sbjct: 655 CKGWQLTGLPCSHAIAVLSCLGRSPFDFCSRYFTTESYRLTYSDSVHPVPQVDLPIHKSS 714

Query: 754 SQLAVTVTPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGHNKSTCKETL 806
            Q +VTVTPPPTRRPPGRPT+K+ G+ +VMKRQLQCS+CKGLGHNKSTCK+ L
Sbjct: 715 LQASVTVTPPPTRRPPGRPTSKRYGSPEVMKRQLQCSRCKGLGHNKSTCKQLL 767

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534979|ref|XP_003536027.1| PREDICTED: uncharacterized protein LOC100776861 [Glycine max]

 Score = 1179 bits (3050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/771 (73%), Positives = 646/771 (83%), Gaps = 18/771 (2%)

Query: 42  MAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAI 101
           MA  KIIAICQ GG+F T KDGSLSYKGGDAHAID+D+ MKFN+FK EVAEMF+   ++I
Sbjct: 1   MAAMKIIAICQSGGKFVTGKDGSLSYKGGDAHAIDIDDLMKFNEFKEEVAEMFSIRADSI 60

Query: 102 LLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASRSSRT 161
            +KYFLPGNKK LITISNDKDLQRMIKF+G  +T D+++++EE+  P++SNMPASRSSRT
Sbjct: 61  SIKYFLPGNKKILITISNDKDLQRMIKFHGSYSTVDIYILIEEVAAPELSNMPASRSSRT 120

Query: 162 TLSESV-----PPVDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPIL 216
           TLSE+V      P++     V  ++      LD V DTN ID N+D   ID+P E+ P+ 
Sbjct: 121 TLSETVVAVAPAPLNAFHTHVADDV------LDVVHDTNQIDTNMD---IDIPLEVPPV- 170

Query: 217 PLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVT 276
            L  SND K+ K AQQWQNTITGVGQRFSSVHEFRE LRKYAIAHQFAFKYKKNDSHRVT
Sbjct: 171 SLRSSNDVKYAKGAQQWQNTITGVGQRFSSVHEFRESLRKYAIAHQFAFKYKKNDSHRVT 230

Query: 277 VKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKV 336
           VKCKAEGCPWRIHASRLSTTQLICIKKMN TH CEGA  T G+QATRSWVASIIKEKLK 
Sbjct: 231 VKCKAEGCPWRIHASRLSTTQLICIKKMNSTHNCEGAFATTGHQATRSWVASIIKEKLKD 290

Query: 337 FPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNP 396
           FP+YKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAY+QLP FCE++ME NP
Sbjct: 291 FPDYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYSQLPFFCEKLMEANP 350

Query: 397 GSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGD 456
           GSLA  TTKEDSSF RLF+S HA L+GF QGCRPL+FLDS+PLKSKYQGTLLAAT+ D D
Sbjct: 351 GSLAMCTTKEDSSFDRLFISLHALLHGFQQGCRPLIFLDSIPLKSKYQGTLLAATSVDAD 410

Query: 457 DGVFPVAFAVV-DAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSF 515
           +GVFPVAF++V DAE++D WHWFLLQLKS LST +CPITFVAD++KGL+ SIAEIF+GSF
Sbjct: 411 EGVFPVAFSIVDDAESDDSWHWFLLQLKSVLST-SCPITFVADREKGLKTSIAEIFEGSF 469

Query: 516 HGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYN 575
           H YCLRYLTEQL +DLKGQFSHEV RLMIED YAAAYA  PE F+ S+ESIK IS EAYN
Sbjct: 470 HAYCLRYLTEQLFRDLKGQFSHEVMRLMIEDLYAAAYATKPEGFQNSMESIKKISEEAYN 529

Query: 576 WILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYT 635
           WI+QSE LNWAN+FF G RYNHMTSNFGELFY+WA+DA+ELPITQMVDVIRGKIMELI  
Sbjct: 530 WIIQSEPLNWANSFFLGTRYNHMTSNFGELFYNWAADADELPITQMVDVIRGKIMELIIA 589

Query: 636 RRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCK 695
           R+  S+QW TRL+P+MEEKL+KES K  SL VL S   T+EV GD+ E V+ID W+CSCK
Sbjct: 590 RKAASDQWETRLSPTMEEKLKKESQKTDSLSVLESTCSTYEVCGDTTEAVNIDRWECSCK 649

Query: 696 GWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQ 755
            WQLTG+PCCHAIAV+S IG S YDYCSRY   ESY+ TYSE ++PI D +  A KD SQ
Sbjct: 650 AWQLTGVPCCHAIAVISGIGQSVYDYCSRYCTAESYKLTYSEIVHPILDMEVSASKD-SQ 708

Query: 756 LAVTVTPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGHNKSTCKETL 806
           L VTVTPPPT+RPPGRP TK+ G+Q+V+KR L CS+CKGLGHNKSTCKE L
Sbjct: 709 LVVTVTPPPTKRPPGRPATKRFGSQEVVKRHLHCSRCKGLGHNKSTCKEQL 759

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575297|ref|XP_003555778.1| PREDICTED: uncharacterized protein LOC100797259 [Glycine max]

 Score = 1176 bits (3043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/770 (74%), Positives = 643/770 (83%), Gaps = 17/770 (2%)

Query: 42  MAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAI 101
           MA  KIIAICQ GG+F T KDG LSYKGGDAHAID+ + MKF++FK EVAEMFN   +++
Sbjct: 1   MAAMKIIAICQSGGKFVTGKDGCLSYKGGDAHAIDIGDLMKFDEFKEEVAEMFNIRADSM 60

Query: 102 LLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASRSSRT 161
            +KYFLPGNKK LITISNDKDLQRMIKF+  S+T D+++++EE+  P+VSNMPASRSSRT
Sbjct: 61  SIKYFLPGNKKILITISNDKDLQRMIKFHVSSSTVDIYILIEEVAAPEVSNMPASRSSRT 120

Query: 162 TLSESVP----PVDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPILP 217
           TLSE+V     P++     V   +      LD V DTN ID N D   +D P E+ P+ P
Sbjct: 121 TLSETVAVAPEPLNAFHTAVADGV------LDVVHDTNQIDTNTD---MDTPLEVPPV-P 170

Query: 218 LTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTV 277
           L  SNDEK+ K AQQWQNTITGVGQRFSSVHEFRE LRKYAIAHQFAFKYKKNDSHRVTV
Sbjct: 171 LRSSNDEKYAKGAQQWQNTITGVGQRFSSVHEFRESLRKYAIAHQFAFKYKKNDSHRVTV 230

Query: 278 KCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVF 337
           KCKAEGCPWRIHASRLSTTQLICIKKMN THTCEGA  T G+QATRSWVASIIKEKLK F
Sbjct: 231 KCKAEGCPWRIHASRLSTTQLICIKKMNSTHTCEGAFATTGHQATRSWVASIIKEKLKDF 290

Query: 338 PNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPG 397
           P+YKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAY+QLP FC+++ME NPG
Sbjct: 291 PDYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYSQLPFFCKKLMEANPG 350

Query: 398 SLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDD 457
           SLA  TTKEDSSF RLFVS HA L GF QGCRPL+FLDS+PLKSKYQGTLLAAT+AD DD
Sbjct: 351 SLAMCTTKEDSSFDRLFVSLHALLLGFQQGCRPLIFLDSIPLKSKYQGTLLAATSADADD 410

Query: 458 GVFPVAFAVV-DAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFH 516
           GVFPVAFA+V DAE++D WHWFLLQLKS LST +CPITFVAD++KGL+ SIAEIF+GSFH
Sbjct: 411 GVFPVAFAIVDDAESDDSWHWFLLQLKSVLST-SCPITFVADREKGLKTSIAEIFEGSFH 469

Query: 517 GYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNW 576
            YCLRYLTEQL +DLKGQFSHEV RLMIED YAAAYA  PE F+ S+ESIK IS EAYNW
Sbjct: 470 AYCLRYLTEQLFRDLKGQFSHEVMRLMIEDLYAAAYATKPEGFQNSMESIKKISEEAYNW 529

Query: 577 ILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTR 636
           I+QSE  NWAN+FF G RYNHMTSNFGELFY+WA+DA+ELPITQMVDVIRGKIMELI +R
Sbjct: 530 IIQSEPQNWANSFFLGTRYNHMTSNFGELFYNWAADADELPITQMVDVIRGKIMELIISR 589

Query: 637 RTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKG 696
           +  S+QW TRL+P+MEEKL+KES K  SL VL S   T+EV GD+ EVVDID W+CSCK 
Sbjct: 590 KAVSDQWETRLSPTMEEKLKKESQKSNSLSVLQSTCSTYEVCGDTTEVVDIDRWECSCKA 649

Query: 697 WQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQL 756
           WQLTG+PCCHAIAV+S I  S YDYCSRY   ESYR TYSE ++PI D +  A KD SQL
Sbjct: 650 WQLTGVPCCHAIAVISGIDQSFYDYCSRYCTAESYRLTYSEIVHPILDMEVSASKD-SQL 708

Query: 757 AVTVTPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGHNKSTCKETL 806
            VTVTPPPT+RPPGRP  K+ G+Q+V+KR L CS+CKGLGHNKSTCKE L
Sbjct: 709 VVTVTPPPTKRPPGRPAMKRFGSQEVVKRHLHCSRCKGLGHNKSTCKEQL 758

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432189|ref|XP_002268620.1| PREDICTED: uncharacterized protein LOC100247698 [Vitis vinifera]

 Score = 1122 bits (2903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/767 (69%), Positives = 627/767 (81%), Gaps = 26/767 (3%)

Query: 42  MAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAI 101
           MA  K+IAICQ GGEF T+KDGSLSY GG+A+AIDVD+Q + +DFK EVAEMFNCS + +
Sbjct: 1   MAAKKVIAICQSGGEFVTNKDGSLSYNGGEAYAIDVDQQTQLSDFKLEVAEMFNCSIDTM 60

Query: 102 LLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASRSSRT 161
            +KYFLP NKKTLITIS DKDL+RM+KF GDS T D+F++ EE V  + S MPASRSSRT
Sbjct: 61  SIKYFLPDNKKTLITISKDKDLKRMVKFLGDSVTVDIFIMTEEAVPRNQSIMPASRSSRT 120

Query: 162 TLSESVPPVDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPD----EISPILP 217
           T+SE+V              +P  A +D VVD  H    ID   +D+ +    + +P++ 
Sbjct: 121 TVSEAV--------------VPAVAPVDAVVDMTHA---IDKVDMDMANYTHSDNAPVI- 162

Query: 218 LTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTV 277
              SND+KH K AQQW+NTITGV QRF+S +EFRE L KY+IAH FA+KYKKNDSHRVTV
Sbjct: 163 ---SNDDKHQKAAQQWENTITGVDQRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTV 219

Query: 278 KCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVF 337
           KCK++GCPWRI+ASRLSTTQLICIKKM+ THTCEGA+V  G +ATR WV +IIKEKLKV 
Sbjct: 220 KCKSQGCPWRIYASRLSTTQLICIKKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVS 279

Query: 338 PNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPG 397
           PNYKPKDI +DIK+EYGIQLNY QAWR KEIA+EQLQGSYKEAY+QLP FCE+I ETNPG
Sbjct: 280 PNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPG 339

Query: 398 SLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDD 457
           S ATF TKEDSSFHRLF+SFHA++ GF QGCRPLLFLDS PL SKYQG LL ATAADGDD
Sbjct: 340 SFATFETKEDSSFHRLFISFHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDD 399

Query: 458 GVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHG 517
           GVFPVAFAVVDAET+D+W WFLL+LKSA+STA  PITFVAD QKGL++S+AEIF   +H 
Sbjct: 400 GVFPVAFAVVDAETDDNWSWFLLELKSAVSTAR-PITFVADFQKGLKKSLAEIFDNGYHS 458

Query: 518 YCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWI 577
           YCLRYLTE+L KDLKGQFSHE +R MI DFYAAAYA   E F+R  E+IK IS EAYNW+
Sbjct: 459 YCLRYLTEKLNKDLKGQFSHEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWV 518

Query: 578 LQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTRR 637
           +QSE  +W+NAFF GARY+HM SNFG+LFY+W S+AN+LPITQMVDV+RGK+MELIY RR
Sbjct: 519 IQSEPDHWSNAFFGGARYSHMASNFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRR 578

Query: 638 TDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGW 697
            DS+QW+T+LTPS EEKL K++   RSLQVLLS G TFEVRG+SI++VDIDHWDCSCK W
Sbjct: 579 VDSSQWITKLTPSKEEKLLKDTSTARSLQVLLSHGSTFEVRGESIDIVDIDHWDCSCKDW 638

Query: 698 QLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQLA 757
           QL+GLPCCHAIAV   IG +PYDYCSRYF  ESYR TY+ESI+P+P+ DRP   +S+Q+ 
Sbjct: 639 QLSGLPCCHAIAVFEWIGRNPYDYCSRYFTVESYRLTYAESIHPVPNVDRPVKTESTQVG 698

Query: 758 VTVTPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGHNKSTCKE 804
           + VTPPPT+RPPGRP  K+ G+ + +KRQLQCSKCKGLGHNK TCK+
Sbjct: 699 IIVTPPPTKRPPGRPKMKQAGSVETIKRQLQCSKCKGLGHNKKTCKD 745

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865779|emb|CAN81145.1| hypothetical protein VITISV_020810 [Vitis vinifera]

 Score = 1091 bits (2822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/772 (67%), Positives = 614/772 (79%), Gaps = 44/772 (5%)

Query: 42  MAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAI 101
           MA  K+IAICQ GGEF T+KDGSLSY GG+A+AIDVD+Q + +DFK EVAEMFNCS + +
Sbjct: 1   MAAKKVIAICQSGGEFVTNKDGSLSYNGGEAYAIDVDQQTQLSDFKLEVAEMFNCSIDTM 60

Query: 102 LLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEEIVEPDVSNMPASR---- 157
            +KYFLP NKKTLITIS DKDL+RM+KF GDS T D+F++ EE V  + S MPASR    
Sbjct: 61  SIKYFLPDNKKTLITISKDKDLKRMVKFLGDSVTVDIFIMTEEAVPRNQSIMPASRLMLF 120

Query: 158 --------------SSRTTLSESVPPVDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDD 203
                         SSRTT+SE+V              +P  A +D VVD  H    ID 
Sbjct: 121 RMLTFRVQFGAQLQSSRTTVSEAV--------------VPAVAPVDAVVDMTHA---IDK 163

Query: 204 TQIDLPD----EISPILPLTGSNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAI 259
             +D+ +    + +P++    SND+KH K AQQW+NTITGV QRF+S +EFRE L KY+I
Sbjct: 164 VDMDMANYTHSDNAPVI----SNDDKHQKAAQQWENTITGVDQRFNSFNEFREALHKYSI 219

Query: 260 AHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGN 319
           AH FA+KYKKNDSHRVTVKCK++GCPWRI+ASRLSTTQLICIKKM+ THTCEGA+V  G 
Sbjct: 220 AHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICIKKMHTTHTCEGAIVKAGY 279

Query: 320 QATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKE 379
           +ATR WV +IIKEKLKV PNYKPKDI +DIK+EYGIQLNY QAWR KEIA+EQLQGSYKE
Sbjct: 280 RATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKE 339

Query: 380 AYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPL 439
           AY+QLP FCE+I ETNPGS ATF TKEDSSFHRLF+SFHA++ GF QGCRPLLFLDS PL
Sbjct: 340 AYSQLPFFCEKIKETNPGSFATFETKEDSSFHRLFISFHAAISGFQQGCRPLLFLDSTPL 399

Query: 440 KSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADK 499
            SKYQG LL ATAADGDDGVFPVAFAVVDAET+D+W WFLL+LKSA+STA  PITFVAD 
Sbjct: 400 NSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNWSWFLLELKSAVSTAR-PITFVADF 458

Query: 500 QKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEF 559
           QKGL++S+AEIF   +H YCLRYLTE+L KDLKGQFSHE +R MI DFYAAAYA   E F
Sbjct: 459 QKGLKKSLAEIFDNGYHSYCLRYLTEKLNKDLKGQFSHEARRFMINDFYAAAYASRLETF 518

Query: 560 ERSIESIKSISLEAYNWILQSEYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPIT 619
           +R  E+IK IS EAYNW++QSE  +W+NAFF GARY+HM SNFG+LFY+W S+AN+LPIT
Sbjct: 519 QRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGARYSHMASNFGQLFYNWVSEANDLPIT 578

Query: 620 QMVDVIRGKIMELIYTRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRG 679
           QMVDV+RGK+MELIY RR DS+QW+T+LTPS EEKL K++   RSLQVLLS G TFEVRG
Sbjct: 579 QMVDVLRGKMMELIYKRRVDSSQWITKLTPSKEEKLLKDTSTARSLQVLLSHGSTFEVRG 638

Query: 680 DSIEVVDIDHWDCSCKGWQLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESI 739
           +SI++VDIDHWDCSCK WQL+GLPCCHAIAV   IG +PYDYCSRYF  ESYR TY+ESI
Sbjct: 639 ESIDIVDIDHWDCSCKDWQLSGLPCCHAIAVFEWIGRNPYDYCSRYFTVESYRLTYAESI 698

Query: 740 NPIPDFDRPAMKDSSQLAVTVTPPPTRRPPGRPTTKKIGTQDVMKRQLQCSK 791
           +P+P+ DRP   +S+Q+   VTPPPT+RPPGRP  K+ G+ + +KRQLQCSK
Sbjct: 699 HPVPNVDRPVKTESTQVGXIVTPPPTKRPPGRPKMKQAGSXETIKRQLQCSK 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548025|ref|XP_003542404.1| PREDICTED: uncharacterized protein LOC100776940 [Glycine max]

 Score = 1079 bits (2790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/763 (65%), Positives = 611/763 (80%), Gaps = 18/763 (2%)

Query: 42  MAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAI 101
           MA  K+IAICQ GGEF TDKDGSLSY GGDA+AID+D+Q   +DFK+E+AEMFNC+ + +
Sbjct: 1   MATRKVIAICQSGGEFVTDKDGSLSYSGGDAYAIDIDQQTSLSDFKSEIAEMFNCNVSTM 60

Query: 102 LLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEE-IVEPDVSNMPASRSSR 160
           ++KYFLPGNKKTLIT+S DKDLQRM+ F GD+ T DVFV+ EE     + SNMP SRSSR
Sbjct: 61  IIKYFLPGNKKTLITVSKDKDLQRMVNFLGDANTVDVFVMSEEGAARNNNSNMPGSRSSR 120

Query: 161 TTLSESVPPVDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPILPLTG 220
           TT+SE+  PV          + P+   +D V   + +++      +D+ +E+      +G
Sbjct: 121 TTVSEAAVPV----------VAPMNVIVDAVQCMDQVEV------VDVANEVPARSICSG 164

Query: 221 SNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCK 280
            ND+ H K AQQW+NTITGV QRF+S  EFRE L KY+IAH FA+KYKKNDSHRVTVKCK
Sbjct: 165 GNDDNHRKAAQQWENTITGVDQRFNSFSEFREALHKYSIAHGFAYKYKKNDSHRVTVKCK 224

Query: 281 AEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNY 340
           ++GCPWR++AS+LSTTQLICIKKM+  HTCEG+VV  G +ATR WV SIIKEKLK  PNY
Sbjct: 225 SQGCPWRVYASKLSTTQLICIKKMHCNHTCEGSVVKAGYRATRGWVGSIIKEKLKDSPNY 284

Query: 341 KPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLA 400
           KPKDI +DIK+EYGIQLNY QAWR KEIA+EQLQGSYKEAY QLPLFCE+I ETNPGS A
Sbjct: 285 KPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKEAYTQLPLFCEKIKETNPGSFA 344

Query: 401 TFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDDGVF 460
           TFTTKEDSSFHRLFV+FHAS+ GF  GCRPL+FLD  PL SKYQG LLAA + DG+DG+F
Sbjct: 345 TFTTKEDSSFHRLFVAFHASISGFQLGCRPLIFLDRTPLNSKYQGELLAAISVDGNDGIF 404

Query: 461 PVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCL 520
           PVAFAVVD ET D+WHWFL +LK A ST+   ITFVAD Q GL++S++++F+  +H YCL
Sbjct: 405 PVAFAVVDTETEDNWHWFLQELKLATSTSE-QITFVADFQNGLKKSLSDVFEKCYHSYCL 463

Query: 521 RYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQS 580
           R+L E+L KDLKGQFSHE +R M+ DFYAAAYAP  E FERSIE+IK IS EAY+W++QS
Sbjct: 464 RHLAEKLNKDLKGQFSHEARRFMVNDFYAAAYAPKLETFERSIENIKGISPEAYDWVIQS 523

Query: 581 EYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTRRTDS 640
           E  +WANAFF GARYN ++SNFG+ FYSW S+A+ELPITQM+D +RGK+ME IYTR+ +S
Sbjct: 524 EPEHWANAFFNGARYNLLSSNFGQQFYSWVSEAHELPITQMIDALRGKMMETIYTRQVES 583

Query: 641 NQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGWQLT 700
           NQW+T+LTPS EE L+KE L   SLQVL S G TFEVRG+S+++VDID+WDCSCKGWQLT
Sbjct: 584 NQWMTKLTPSKEELLQKERLVAHSLQVLFSQGSTFEVRGESVDIVDIDNWDCSCKGWQLT 643

Query: 701 GLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQLAVTV 760
           G+PCCHAIAV  C+G SPYDYCSRYF  E+YR TY+ESI+P+P+ D+P ++  S   V V
Sbjct: 644 GVPCCHAIAVFECVGRSPYDYCSRYFTVENYRLTYAESIHPVPNVDKPPVQGESTALVMV 703

Query: 761 TPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGHNKSTCK 803
            PPPT+RPPGRP  K++ + D++KRQLQCSKCKGLGHN+ TCK
Sbjct: 704 IPPPTKRPPGRPKMKQVESIDIIKRQLQCSKCKGLGHNRKTCK 746

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565507|ref|XP_003550981.1| PREDICTED: uncharacterized protein LOC100809446 [Glycine max]

 Score = 1077 bits (2786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/763 (65%), Positives = 611/763 (80%), Gaps = 18/763 (2%)

Query: 42  MAGDKIIAICQLGGEFETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAI 101
           MA  K+IAICQ GGEF TDK+GSLSY GGDA+AID+D+Q   +DFK+E+AEMFNC+ + I
Sbjct: 1   MATRKVIAICQSGGEFVTDKEGSLSYSGGDAYAIDIDQQTSLSDFKSEIAEMFNCNVSTI 60

Query: 102 LLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVILEE-IVEPDVSNMPASRSSR 160
           ++KYFLPGNKKTLIT+S DKDLQRM+ F GD+ T DVFV+ EE     + SNMP SRSSR
Sbjct: 61  IIKYFLPGNKKTLITVSKDKDLQRMVNFLGDANTVDVFVMSEEGAARNNNSNMPGSRSSR 120

Query: 161 TTLSESVPPVDVVDDMVDGNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPILPLTG 220
           TT+SE+  PV          + P+   +D V   + +++      +D+ +E+      +G
Sbjct: 121 TTVSEATVPV----------VAPIDVIVDAVQCMDQVEV------VDVANEVHVRSICSG 164

Query: 221 SNDEKHVKTAQQWQNTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCK 280
            ND+ H K AQQW+NTITGV QRF+S  EFRE L KY+IAH FA+KYKKNDSHRVTVKCK
Sbjct: 165 GNDDNHRKAAQQWENTITGVDQRFNSFSEFREALHKYSIAHGFAYKYKKNDSHRVTVKCK 224

Query: 281 AEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNY 340
           ++GCPWR++ASRLSTTQLICIKKM+  HTCEG+ V  G +ATR WV SIIKEKLK  PNY
Sbjct: 225 SQGCPWRVYASRLSTTQLICIKKMHCDHTCEGSAVKAGYRATRGWVGSIIKEKLKDSPNY 284

Query: 341 KPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLA 400
           KPKDI +DIK+EYGIQLNY QAWR KEIA+EQLQGSY EAY QLPLFCE+I ETNPGS A
Sbjct: 285 KPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYIEAYTQLPLFCEKIKETNPGSFA 344

Query: 401 TFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAADGDDGVF 460
           TFTTKEDSSFHRLFV+FHAS  GF  GCRPL+FLD+ PL SKYQG LLAATA DG+DG+F
Sbjct: 345 TFTTKEDSSFHRLFVAFHASTSGFQLGCRPLIFLDTTPLNSKYQGELLAATAVDGNDGIF 404

Query: 461 PVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCL 520
           PVAFAVVD ET D+W WFL +LK A ST+   ITFVAD Q GL++S++++F+  +H YCL
Sbjct: 405 PVAFAVVDTETEDNWRWFLQELKLATSTSE-KITFVADFQNGLKKSLSDVFEKCYHSYCL 463

Query: 521 RYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQS 580
           R+L E+L KDLKGQFSHE +R M+ DFYAAAYAP  E FERS+E+IK IS EAY+W++QS
Sbjct: 464 RHLAEKLNKDLKGQFSHEARRFMVNDFYAAAYAPKLETFERSVENIKGISPEAYDWVIQS 523

Query: 581 EYLNWANAFFQGARYNHMTSNFGELFYSWASDANELPITQMVDVIRGKIMELIYTRRTDS 640
           E  +WANAFF GARYN ++SNFG+ FYSW S+A+ELPITQM+D +RGK+ME IYTRR +S
Sbjct: 524 EPEHWANAFFNGARYNLLSSNFGQQFYSWVSEAHELPITQMIDALRGKMMETIYTRRVES 583

Query: 641 NQWLTRLTPSMEEKLEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGWQLT 700
           NQW+T+LTPS EE L+KE+L   SLQVL S G TFEVRG+S+++VDID+WDCSCKGWQLT
Sbjct: 584 NQWMTKLTPSKEELLQKETLVAPSLQVLFSQGSTFEVRGESVDIVDIDNWDCSCKGWQLT 643

Query: 701 GLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPDFDRPAMKDSSQLAVTV 760
           G+PCCHAIAV  C+G SPYDYCSRYF  E+YR TY+ESI+P+P+ D+P ++  S   V V
Sbjct: 644 GVPCCHAIAVFECVGRSPYDYCSRYFTVENYRLTYAESIHPVPNVDKPPVQGESTSLVMV 703

Query: 761 TPPPTRRPPGRPTTKKIGTQDVMKRQLQCSKCKGLGHNKSTCK 803
           TPPPT+RPPGRP  K++ + D++KRQLQCSKCKGLGHN+ TCK
Sbjct: 704 TPPPTKRPPGRPKMKQVESIDIIKRQLQCSKCKGLGHNRKTCK 746

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	806
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.604	0.677	0.231	1.4e-27
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.513	0.527	0.224	7.6e-25
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.615	0.661	0.217	2.2e-19
TAIR|locus:2035144	703	FRS6 "FAR1-related sequence 6"	0.420	0.482	0.201	0.0001
ASPGD|ASPL0000006623	394	AN6174 [Emericella nidulans (t	0.167	0.342	0.26	0.00027

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 122/527 (23%), Positives = 215/527 (40%)

Query:   240 VGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLI 299
             +G  F    E ++ +  + I  +     ++ +    T +C    C W + A+R+    L+
Sbjct:   187 LGLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARMEEHGLV 246

Query:   300 CIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNY 359
              I K    HTC        N     + A  I+  +++ P     ++    K++ G +L  
Sbjct:   247 EITKYTGPHTCSHEYP---NDFESEFAADEIERVVRIQPTLSIAELKKWWKEKTGYELQT 303

Query:   360 FQAWRGK-EIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLAT-----FTTKEDSSFHRL 413
              +   GK E+ K ++ G   +++  +P        +N G L       F   + +SF  +
Sbjct:   304 SKMRDGKLEVIK-RVFGDEDQSFRVMPKLISAFHSSN-GLLVDWQYDLFPNPDFASFRGV 361

Query:   414 FVSFHASLYGFIQGCRPLLFLDSVPLKSKYQXXXXXXXXXXXXXXVFPVAFAVVDAETND 473
             F SF  S+ GF Q CRPL+ +D+  L  KYQ               FP+AFAV    + D
Sbjct:   362 FWSFSQSIEGF-QHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTD 420

Query:   474 DWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFK-GSF-------HGYCLRYLTE 525
              W WF  +++  + T    +  ++     LR+ +A + + GS        H +CL +L  
Sbjct:   421 SWRWFFTKIREKV-TQRKDLCLISSP---LRDIVAVVNEPGSLWQEPWAHHKFCLNHLRS 476

Query:   526 QLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSEYLNW 585
             Q +    G F       ++E    A      EEF+  +  IK  + EA+ W+ Q     W
Sbjct:   477 QFL----GVFRDYNLESLVEQ---AGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKW 529

Query:   586 ANAFFQGARYNHMTSNFGELF-----YSWASDANELPITQMVDVIRGKIMELIYTRRTDS 640
             A A   G RY  +  +   LF     + + + A    +  M D +R    + + +  +  
Sbjct:   530 ALAHDSGLRYGIIEIDREALFAVCRGFPYCTVAMTGGVMLMFDELRSSFDKSLSSIYSSL 589

Query:   641 NQWLTRLTPXXXXXXXXXXXXXXXXQVLLSAGRTFEVRGDSIE---VVDIDHWDCSCKGW 697
             N+ +    P                   L    +F+V   S +   +V ++   C+C+ +
Sbjct:   590 NRGVVYTEPFMDKLEEFMTDSIPYVITQLERD-SFKVSESSEKEEWIVQLNVSTCTCRKF 648

Query:   698 QLTGLPCCHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPD 744
             Q    PC HA+AV   +  +P  Y    +  E Y  TY+ + +P+PD
Sbjct:   649 QSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPD 695

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
 Identities = 100/445 (22%), Positives = 182/445 (40%)

Query:   180 NIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISPILPLTGSNDEKHVKTAQQWQNTITG 239
             +++P+G +      + H    +   Q     E+      +GS     + +    +     
Sbjct:   124 SLLPMGMNPQKRQKSRH--QVVGKRQKSTQQEVGDTNSGSGSGSTPTLVSGLWLEGDTMR 181

Query:   240 VGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLI 299
             VG  F  + E ++ +   +I  +     ++ +     V+C+   C W I ASR     L 
Sbjct:   182 VGLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREEDGLF 241

Query:   300 CIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNY 359
              I + +  H C    +   N      +   I+  ++V P     ++    ++++G  L+ 
Sbjct:   242 EITECSGPHDCYPEHL---NDFDAECIPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQ 298

Query:   360 F--QAWRGK-EIAK----EQLQGSYKEAYNQLPLFCERIMETNPGSLATFT------TKE 406
                    G  E AK    ++  G + +++  +P     ++ ++ G L  +         E
Sbjct:   299 VVEHCSEGLVEDAKVKAIKRFFGDWDQSFRLIPKLMS-VLHSSNGLLVDWQYDSLTHDPE 357

Query:   407 DSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQXXXXXXXXXXXXXXVFPVAFAV 466
              +SF  LF +F  S+ GF Q CRPL+ +D+  L  KY+               FP+AFAV
Sbjct:   358 HASFRGLFWAFSQSIQGF-QHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAV 416

Query:   467 VDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEI---FKG--SFHGYCLR 521
                 + D W WFL +++  + T    I  ++     +   I E    +K   ++H +CL 
Sbjct:   417 TKEVSVDSWRWFLTRIREKV-TQRQGICLISSPDPDILAVINEPGSQWKEPWAYHRFCLY 475

Query:   522 YLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSE 581
             +L  +L     G F + +  L+ E    A  +   EEF+  ++ IK  + EA+ W+ Q  
Sbjct:   476 HLCSKLCSVSPG-FDYNMHFLVDE----AGSSSQKEEFDSYMKEIKERNPEAWKWLDQFP 530

Query:   582 YLNWANAFFQGARYNHMTSNFGELF 606
                WA A   G RY  M  +   LF
Sbjct:   531 PHQWALAHDDGRRYGIMRIDTEALF 555

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 113/520 (21%), Positives = 189/520 (36%)

Query:   240 VGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLI 299
             VG  F    E ++ +   ++  Q     ++        +C    C W + A+R+    L+
Sbjct:   194 VGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMKKHGLV 253

Query:   300 CIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNY 359
              I K    HTC   V  +       +    I+  ++  P     ++    K++ G +L  
Sbjct:   254 EIIKYTGPHTCHPIVPEDFKS---EFETDEIERAVRYMPTQTISELKKWWKKKIGYELET 310

Query:   360 FQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLAT-----FTTKEDSSFHRLF 414
                   KE A +++ G + +++   P     +  +N G L       F     +SF  +F
Sbjct:   311 SDVRLAKEKAIKRVFGDWDQSFEDFPKLMSALCSSN-GLLVDWKYDLFPNPNFASFCGVF 369

Query:   415 VSFHASLYGFIQGCRPLLFLDSVPLKSKYQXXXXXXXXXXXXXXVFPVAFAVVDAETNDD 474
              +F  S+ GF Q CRPL+ +D+  L  +YQ               FP+AFAV    + D 
Sbjct:   370 WAFPQSIEGF-QHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEVSTDI 428

Query:   475 WHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQ 534
             W WFL  ++  + T    +  ++     +   + E   GS       Y    L      Q
Sbjct:   429 WRWFLTGIREKV-TQRKGLCLISSPHPDIIAVVNE--SGSQWQEPWAYHRFSL-NHFYSQ 484

Query:   535 FSHEVKRLMI-EDFYAAAYAPTPEEFERSIESIKSISLEAYNWILQSEYLNWANAFFQGA 593
             FS       +      A      +EF   +  IK  + EA  W+ Q     WA A   G 
Sbjct:   485 FSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDNGR 544

Query:   594 RYNHMTSNFGELF-----YSWASDANELPITQMVDVIRGKIMELIYTRRTDSNQWLTRLT 648
             RY  M  N   LF     +  A       +  + D +R K  +     R+  N       
Sbjct:   545 RYGIMEINTKALFAVCNAFEQAGHVVTGSVLLLFDELRSKFDKSFSCSRSSLNCGDVYTE 604

Query:   649 PXXXXXXXXXXXXXXXXQVLLSA-GRTFEVRG--DSIE-VVDIDHWDCSCKGWQLTGLPC 704
             P                 ++       F+V    D  E +V +    C+C  +Q    PC
Sbjct:   605 PVMDKLEEFRTTFVTYSYIVTPLDNNAFQVATALDKGECIVQLSDCSCTCGDFQRYKFPC 664

Query:   705 CHAIAVLSCIGCSPYDYCSRYFMTESYRSTYSESINPIPD 744
              HA+AV   +  +P  Y    +  E  + TY+   + +P+
Sbjct:   665 LHALAVCKKLKFNPLQYVDDCYTLERLKRTYATIFSHVPE 704

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 75/372 (20%), Positives = 141/372 (37%)

Query:   267 YKK-NDSHRVTVKCKAEGCPWRIHASRLSTTQLICIK-KMNPTHTCEGAVVTNGNQATRS 324
             +K+ ND +RV  + +  GCP  I   ++ + +   ++  ++  H   G  +    +  R 
Sbjct:   138 FKRINDVNRVRKETRT-GCPAMIRMRQVDSKRWRVVEVTLDHNHLL-GCKLYKSVKRKRK 195

Query:   325 WVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNY-FQAWRGKEIAKEQLQGSYKEAYNQ 383
              V+S + +  K    Y+   + N         LN  FQ   G        +G     YN 
Sbjct:   196 CVSSPVSDA-KTIKLYRACVVDNGSNVNPNSTLNKKFQNSTGSPDLLNLKRGDSAAIYNY 254

Query:   384 LPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCR---PLLFLDSVPLK 440
                FC R+  TNP         ++     +F    A  +  +  C     ++F+DS  + 
Sbjct:   255 ---FC-RMQLTNPNFFYLMDVNDEGQLRNVF---WADAFSKVS-CSYFGDVIFIDSSYIS 306

Query:   441 SKYQXXXXXXXXXXXXXXVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQ 500
              K++                 ++   +  ET + +HW L    S +  +  P T V D+ 
Sbjct:   307 GKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLKVWLSVMKRS--PQTIVTDRC 364

Query:   501 KGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPE-EF 559
             K L  +I+++F  S   + L ++  ++ + L G  +++  R   + F  A Y      EF
Sbjct:   365 KPLEAAISQVFPRSHQRFSLTHIMRKIPEKLGGLHNYDAVR---KAFTKAVYETLKVVEF 421

Query:   560 ERSIE-SIKSISLEAYNWI--LQSEYLNWA-----NAFFQGARYNHMTSNFGELFYSWAS 611
             E +    + +  +    W+  L  E   WA     + FF G    H        F  +  
Sbjct:   422 EAAWGFMVHNFGVIENEWLRSLYEERAKWAPVYLKDTFFAGIAAAHPGETLKPFFERYVH 481

Query:   612 DANELPITQMVD 623
                + P+ + +D
Sbjct:   482 --KQTPLKEFLD 491

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009639 "response to red or far red light" evidence=ISS

ASPGD|ASPL0000006623 AN6174 [Emericella nidulans (taxid:162425)]

 Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 39/150 (26%), Positives = 77/150 (51%)

Query:   240 VGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAE-GCPWRI--HASRLSTT 296
             VGQRF+S+ +F+ L+R  ++   +  +  +++   V + C++   C +R+   A+R +T 
Sbjct:    10 VGQRFASLEDFKALVRSISVRQHWELRVTRSNKKSVVIGCRSSPNCFFRVVCRANRNATY 69

Query:   297 QLICIKKMNPTHTCE-GAVVTNGNQATR--SWVASIIKEKLKVFP---NYKPKDIVNDIK 350
                 I  +  +H+C   A  T    A    S V  ++ E  K+F      K +DIV+ +K
Sbjct:    70 ----ISSLQDSHSCRRNATSTTKTPARSEASHVRFLLSEIPKLFDMRNKIKAQDIVDAVK 125

Query:   351 QEYGIQLNYFQAWRGKEIAKEQLQGSYKEA 380
             + +G  ++  QA R   + + Q +GS +++
Sbjct:   126 RYHGYDISTRQAQRA--LIRLQQRGSQQQS 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      806       747   0.00089  121 3  11 22  0.38    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  425 KB (2204 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  57.61u 0.11s 57.72t   Elapsed:  00:00:03
  Total cpu time:  57.61u 0.11s 57.72t   Elapsed:  00:00:03
  Start:  Tue May 21 00:03:28 2013   End:  Tue May 21 00:03:31 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	806
cd06410	97	cd06410, PB1_UP2, Uncharacterized protein 2	6e-30
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	2e-24
pfam10551	88	pfam10551, MULE, MULE transposase domain	1e-17
smart00666	81	smart00666, PB1, PB1 domain	9e-12
pfam00564	84	pfam00564, PB1, PB1 domain	9e-12
cd05992	81	cd05992, PB1, The PB1 domain is a modular domain m	1e-10
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	2e-09
pfam04434	38	pfam04434, SWIM, SWIM zinc finger	2e-07

>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2

 Score =  113 bits (285), Expect = 6e-30
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 50  ICQLGGEF-ETDKDGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLP 108
           +C  GG       DG L Y GG+   + VD  + F +  ++++E+F      + LKY LP
Sbjct: 1   LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAG-VVVTLKYQLP 59

Query: 109 GNKKT-LITISNDKDLQRMIKF----NGDSATTDVFVI 141
                 LI++SND+DL+ M++     +G SA   VF+ 
Sbjct: 60  DEDLDALISVSNDEDLKNMMEEYDRLSGGSARLRVFLF 97

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. Length = 97

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 96.5 bits (241), Expect = 2e-24
 Identities = 32/62 (51%), Positives = 41/62 (66%)

Query: 240 VGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLI 299
           VGQ F S  EF++ +RKYAI ++F FK KK+D  R   KCK EGCPWR+ AS+L  +   
Sbjct: 6   VGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLKDSDTF 65

Query: 300 CI 301
            I
Sbjct: 66  QI 67

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 445 GTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLR 504
                A   D     FP+AFA+V  E+ + W WFL  LK AL     P+T ++D  KGL+
Sbjct: 6   NKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGG-RPPLTIISDGDKGLK 64

Query: 505 ESIAEIFKGSFHGYCLRYLTEQL 527
           ++I E+F  + H  CL ++   L
Sbjct: 65  KAIKEVFPNARHRLCLWHILRNL 87

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|214770 smart00666, PB1, PB1 domain

 Score = 61.1 bits (149), Expect = 9e-12
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 62  DGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDK 121
           D  L Y GG+   + V   + F D +++VA+ F     +  LKY        L+++++D+
Sbjct: 3   DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ--DEDGDLVSLTSDE 59

Query: 122 DLQRMIKF 129
           DL+  I+ 
Sbjct: 60  DLEEAIEE 67

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. Length = 81

>gnl|CDD|215996 pfam00564, PB1, PB1 domain

 Score = 61.1 bits (149), Expect = 9e-12
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 62  DGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDK 121
              L Y GG    + V   + F + +++V + F        LKY  P     L++I++D+
Sbjct: 3   RVKLRYGGGIRRFLSVSPGISFEELRSKVEQRFGLDRVDFKLKY--PDEDGDLVSITSDE 60

Query: 122 DLQRMIK 128
           DL+  I+
Sbjct: 61  DLEEAIE 67

Length = 84

>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 62  DGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDK 121
              + Y G     + V   + F D ++++AE F    +A+  K   P     L+TIS+D+
Sbjct: 2   RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFG--LDAVSFKLKYPDEDGDLVTISSDE 59

Query: 122 DLQRMIKF--NGDSATTDVFV 140
           DL+  I+      S    +FV
Sbjct: 60  DLEEAIEEARRSGSKKLRLFV 80

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 81

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 690 WDCSCKGWQLTGLPCCHAIAVLSCIGCS 717
             CSC+ +QL+G+PC HA+A    IG S
Sbjct: 1   KTCSCRKFQLSGIPCRHALAAAIHIGLS 28

Length = 28

>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 681 SIEVVDIDHWDCSCKGWQLTGLPCCHAIAVLSCIG 715
            +++ D+    CSC  +QL G+PC HA+AVL  +G
Sbjct: 4   QLDLDDLVKASCSCPAFQLYGIPCKHALAVLLALG 38

This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organised into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	806
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	99.92
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.84
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.78
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.65
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.42
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.83
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	98.75
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	98.55
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.49
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	98.07
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.95
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.89
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.89
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	97.48
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	97.39
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	96.97
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.72
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	96.25
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	96.17
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	96.16
cd06405	79	PB1_Mekk2_3 The PB1 domain is present in the two m	95.97
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	95.96
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	95.31
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.14
PF00098	18	zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi	95.02
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	95.01
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	93.52
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	93.49
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	93.33
PF15288	40	zf-CCHC_6: Zinc knuckle	93.3
PF13610	140	DDE_Tnp_IS240: DDE domain	93.08
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	92.63
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	90.3
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	88.64
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	88.13
PF13696	32	zf-CCHC_2: Zinc knuckle	87.33
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	87.21
PF13565	77	HTH_32: Homeodomain-like domain	81.88
COG3316	215	Transposase and inactivated derivatives [DNA repli	80.92

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=4.6e-69  Score=625.59  Aligned_cols=473  Identities=17%  Similarity=0.255  Sum_probs=377.5

Q ss_pred             ccccCcccCCHHHHHHHHHHHHHHcCeEEEEeecCce-------EEEEEeec----------------------------
Q 003638          237 ITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSH-------RVTVKCKA----------------------------  281 (806)
Q Consensus       237 ~~~vG~~F~s~ee~~~a~~~yAi~~gf~~~~~ks~~~-------r~~~~C~~----------------------------  281 (806)
                      .+.+||+|+|.+|++++|+.||...||++|+.++.++       ..+++|++                            
T Consensus        73 ~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~~~  152 (846)
T PLN03097         73 EPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENGTG  152 (846)
T ss_pred             cCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccccc
Confidence            4679999999999999999999999999998755322       23567754                            


Q ss_pred             ------CCCCeEEEEEEeCCCceEEEEecCCCccccCcccccccccchhhHHHHHHHHHhcCCCCChHHHHHHHHHHhCc
Q 003638          282 ------EGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGI  355 (806)
Q Consensus       282 ------~gCpwri~as~~~~~~~~~I~~~~~~HnC~~~~~~~~~~~~~~~ia~~i~~~i~~~~~~~~~~I~~~l~~~~g~  355 (806)
                            +|||++|.+.+. ..+.|.|+.+..+|||++.........++....... ..+....++..      +..+.  
T Consensus       153 rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~~~-~~~~~~~~v~~------~~~d~--  222 (846)
T PLN03097        153 RRSCAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMA-RQFAEYKNVVG------LKNDS--  222 (846)
T ss_pred             cccccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccccchhhhhhHHHHH-hhhhccccccc------cchhh--
Confidence                  379999999874 557899999999999999754321111111110000 00000000000      00000  


Q ss_pred             cccHHHHHHHHHHHHHHHhcChHHHhccHHHHHHHHHHhCCCcEEEEEecCCCceeEEEEEccccHHHHhhcCCceEEec
Q 003638          356 QLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLD  435 (806)
Q Consensus       356 ~~s~~~~~rak~~~~~~~~g~~~~~~~~L~~~~~~l~~~NPg~~~~~~~~~~~~f~~lF~a~~~s~~~f~~~~~~vi~lD  435 (806)
                         ....-+.|.+  + +   ..+..+.|..|+.+++.+||+|+|.+++|++++++++|||++.|+..|. +|+|||.+|
T Consensus       223 ---~~~~~~~r~~--~-~---~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~-~FGDvV~fD  292 (846)
T PLN03097        223 ---KSSFDKGRNL--G-L---EAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYG-NFSDVVSFD  292 (846)
T ss_pred             ---cchhhHHHhh--h-c---ccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHH-hcCCEEEEe
Confidence               0001111111  1 1   1235678999999999999999999999999999999999999999999 799999999


Q ss_pred             cccccccccceEEEEeeecCCCCeeeEEEEEecCCCchhHHHHHHHHHHHccCCCCCeEEEecCchhHHHHHHhhccccc
Q 003638          436 SVPLKSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSF  515 (806)
Q Consensus       436 ~T~~~~~y~~~ll~a~g~d~~~~~~plafa~v~~E~~esw~wfl~~lk~~~~~~~~p~~iisD~~~~l~~Ai~~vfP~a~  515 (806)
                      +||++|+|++||+.++|+|+|+|++++|+||+.+|+.|+|.|+|++|+++|++. .|.+||||++.+|.+||++|||++.
T Consensus       293 TTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk-~P~tIiTDqd~am~~AI~~VfP~t~  371 (846)
T PLN03097        293 TTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQ-APKVIITDQDKAMKSVISEVFPNAH  371 (846)
T ss_pred             ceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCC-CCceEEecCCHHHHHHHHHHCCCce
Confidence            999999999999999999999999999999999999999999999999999998 8999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc-CCCHHHHHHHHHH-HHhccHHHHHHHHh--ccCCCccccccC
Q 003638          516 HGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAY-APTPEEFERSIES-IKSISLEAYNWILQ--SEYLNWANAFFQ  591 (806)
Q Consensus       516 h~~C~~Hi~~n~~~~~~~~~~~~~~~~~~~~~~~~~~-a~t~~eF~~~~~~-l~~~~~~~~~~l~~--~~~~~W~~a~~~  591 (806)
                      |++|.|||++|+.++++..+..  .+.+...|..+++ +.+++||+..|.. |.+++++.++||..  ..+++|+++|++
T Consensus       372 Hr~C~wHI~~~~~e~L~~~~~~--~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k  449 (846)
T PLN03097        372 HCFFLWHILGKVSENLGQVIKQ--HENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMR  449 (846)
T ss_pred             ehhhHHHHHHHHHHHhhHHhhh--hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhc
Confidence            9999999999999999765432  3568888999887 4799999999988 56889999999999  699999999999


Q ss_pred             CCccccc-ccchhHhhhHHhhh--CCCCCHHHHHHHHHHHHHHHHHHHHH-----------------hhhhcccCCchhH
Q 003638          592 GARYNHM-TSNFGELFYSWASD--ANELPITQMVDVIRGKIMELIYTRRT-----------------DSNQWLTRLTPSM  651 (806)
Q Consensus       592 ~~~~~~~-ttN~~Es~n~~lk~--~r~~~i~~l~~~i~~~~~~~~~~r~~-----------------~~~~~~~~~tp~~  651 (806)
                      +.+++.| ||+++||+|++|++  .+..+|..|++.....+..+..+..+                 ..++.+..|||.+
T Consensus       450 ~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~i  529 (846)
T PLN03097        450 DAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAV  529 (846)
T ss_pred             ccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHH
Confidence            9998766 67899999999998  57788888887665544433322211                 2356688999999


Q ss_pred             HHHHHHHHhcccceEEEEeC-C---eEEEEec---ceeEEe--eC--cCcccccccccccCCcccchhHHhhhcCCC--c
Q 003638          652 EEKLEKESLKVRSLQVLLSA-G---RTFEVRG---DSIEVV--DI--DHWDCSCKGWQLTGLPCCHAIAVLSCIGCS--P  718 (806)
Q Consensus       652 ~~kl~~~~~~a~~~~v~~~~-~---~~f~V~~---~~~~~V--dl--~~~~CsC~~~~~~GiPC~H~lav~~~~~~~--~  718 (806)
                      |++||+|+..+..|.+...+ +   .+|.|.+   ...|.|  |.  ...+|+|++|+..||||+|||.|+...++.  |
T Consensus       530 F~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP  609 (846)
T PLN03097        530 FKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIP  609 (846)
T ss_pred             HHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCc
Confidence            99999999999888876532 2   3588864   345766  32  477999999999999999999999999995  9


Q ss_pred             ccccccchhhhHhh
Q 003638          719 YDYCSRYFMTESYR  732 (806)
Q Consensus       719 ~~yv~~~yt~~~~~  732 (806)
                      ..||.++||+++-.
T Consensus       610 ~~YILkRWTKdAK~  623 (846)
T PLN03097        610 SQYILKRWTKDAKS  623 (846)
T ss_pred             hhhhhhhchhhhhh
Confidence            99999999988653

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=99.92  E-value=2.7e-25  Score=192.17  Aligned_cols=90  Identities=34%  Similarity=0.688  Sum_probs=84.8

Q ss_pred             EEeeCCEEEecC-CCCEEEecCceEEEEecCCCChHHHHHHHHHHcCCCCccEEEEEEcCCC-CceeEEEeChHHHHHHH
Q 003638           50 ICQLGGEFETDK-DGSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGN-KKTLITISNDKDLQRMI  127 (806)
Q Consensus        50 ~c~~gG~~~~~~-~g~~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~-~~~l~~~~~D~dl~~M~  127 (806)
                      ||||||+|+|++ ||+++|+||+||+|.|+|++||+||++||+++++++.. +++|||||++ +++|++|++|+||.+|+
T Consensus         1 ~cs~GG~i~pr~~dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp~edld~Lisv~~DeDl~~M~   79 (97)
T cd06410           1 LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQLPDEDLDALISVSNDEDLKNMM   79 (97)
T ss_pred             CcccCCEEeCcCCCCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcCCCCcceeEEecCcHHHHHHH
Confidence            699999999887 99999999999999999999999999999999988766 9999999988 57899999999999999


Q ss_pred             HhcC----CCCeEEEEE
Q 003638          128 KFNG----DSATTDVFV  140 (806)
Q Consensus       128 ~~~~----~~~~v~iyv  140 (806)
                      ++++    ....++||+
T Consensus        80 ~e~~~~~~~~~rirvfl   96 (97)
T cd06410          80 EEYDRLSGGSARLRVFL   96 (97)
T ss_pred             HhhccccCCCceEEEEE
Confidence            9999    778888886

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.84  E-value=5.7e-21  Score=168.24  Aligned_cols=90  Identities=36%  Similarity=0.636  Sum_probs=86.5

Q ss_pred             cccccccccceEEE---EeeecCCCCeeeEEEEEecCCCchhHHHHHHHHHHHccCCCCCeEEEecCchhHHHHHHhhcc
Q 003638          436 SVPLKSKYQGTLLA---ATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFK  512 (806)
Q Consensus       436 ~T~~~~~y~~~ll~---a~g~d~~~~~~plafa~v~~E~~esw~wfl~~lk~~~~~~~~p~~iisD~~~~l~~Ai~~vfP  512 (806)
                      |||++|+| ++++.   ++|+|++|+.+|+||+++++|+.++|.|||+.+++.+...  |.+||||++.|+.+||+++||
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~~--p~~ii~D~~~~~~~Ai~~vfP   77 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQK--PKVIISDFDKALINAIKEVFP   77 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccccC--ceeeeccccHHHHHHHHHHCC
Confidence            69999999 98886   9999999999999999999999999999999999999884  999999999999999999999


Q ss_pred             cccccchHHHHHHHHH
Q 003638          513 GSFHGYCLRYLTEQLV  528 (806)
Q Consensus       513 ~a~h~~C~~Hi~~n~~  528 (806)
                      ++.|++|.||+.+|++
T Consensus        78 ~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   78 DARHQLCLFHILRNIK   93 (93)
T ss_pred             CceEehhHHHHHHhhC
Confidence            9999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.78  E-value=8.2e-20  Score=201.66  Aligned_cols=241  Identities=20%  Similarity=0.225  Sum_probs=189.0

Q ss_pred             CCCCChHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHhcChHHHhccHHHHHHHHHHhCCCcEEEEEecCCCceeEEEE
Q 003638          337 FPNYKPKDIVNDIKQEYG-IQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFV  415 (806)
Q Consensus       337 ~~~~~~~~I~~~l~~~~g-~~~s~~~~~rak~~~~~~~~g~~~~~~~~L~~~~~~l~~~NPg~~~~~~~~~~~~f~~lF~  415 (806)
                      -.+++.++|.+.+..-+| ..+|-+++.|..+...+.+.           .|..+-.                       
T Consensus       112 ~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~~-----------~w~~R~L-----------------------  157 (381)
T PF00872_consen  112 LKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEVE-----------AWRNRPL-----------------------  157 (381)
T ss_pred             ccccccccccchhhhhhcccccCchhhhhhhhhhhhhHH-----------HHhhhcc-----------------------
Confidence            357899999999999999 78999999887655444332           1111110                       


Q ss_pred             EccccHHHHhhcC-CceEEecccccccccc-----ceEEEEeeecCCCCeeeEEEEEecCCCchhHHHHHHHHHHHccCC
Q 003638          416 SFHASLYGFIQGC-RPLLFLDSVPLKSKYQ-----GTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTA  489 (806)
Q Consensus       416 a~~~s~~~f~~~~-~~vi~lD~T~~~~~y~-----~~ll~a~g~d~~~~~~plafa~v~~E~~esw~wfl~~lk~~~~~~  489 (806)
                                ... .++|++|++|.+-+.+     ..+++++|+|.+|+..+||+.+.+.|+.++|.-||+.|++..-..
T Consensus       158 ----------~~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~RGl~~  227 (381)
T PF00872_consen  158 ----------ESEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKERGLKD  227 (381)
T ss_pred             ----------ccccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhccccc
Confidence                      134 5899999999986643     468999999999999999999999999999999999999886554


Q ss_pred             CCCeEEEecCchhHHHHHHhhcccccccchHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--
Q 003638          490 TCPITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIK--  567 (806)
Q Consensus       490 ~~p~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~~~~~~~~~~~~~~~~~~~~a~t~~eF~~~~~~l~--  567 (806)
                        |..||+|+++||.+||.++||++.++.|.+|+++|+.+++...    .++.+...++.+.++.+.++....++.+.  
T Consensus       228 --~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k----~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~  301 (381)
T PF00872_consen  228 --ILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKK----DRKEVKADLKAIYQAPDKEEAREALEEFAEK  301 (381)
T ss_pred             --cceeeccccccccccccccccchhhhhheechhhhhccccccc----cchhhhhhccccccccccchhhhhhhhcccc
Confidence              7999999999999999999999999999999999999998543    34566677788888888888777777654  


Q ss_pred             --hccHHHHHHHHhccCCCccccccCCCcc-cccccchhHhhhHHhhhC----CCCCHHHHHHHHHH
Q 003638          568 --SISLEAYNWILQSEYLNWANAFFQGARY-NHMTSNFGELFYSWASDA----NELPITQMVDVIRG  627 (806)
Q Consensus       568 --~~~~~~~~~l~~~~~~~W~~a~~~~~~~-~~~ttN~~Es~n~~lk~~----r~~~i~~l~~~i~~  627 (806)
                        ..+|++.+++.+...+.|+..-|+...+ ...|||.+||+|+.||+.    ...|-.+.+..+..
T Consensus       302 ~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irrr~~~~~~Fp~~~s~lr~~~  368 (381)
T PF00872_consen  302 WEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRRRTKVVGIFPNEESALRLVY  368 (381)
T ss_pred             cccccchhhhhhhhccccccceeeecchhccccchhhhccccccchhhhccccccCCCHHHHHHHHH
Confidence              5688999999987777777654554444 466999999999999973    33454444443333

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.65  E-value=4.9e-16  Score=127.25  Aligned_cols=67  Identities=46%  Similarity=0.823  Sum_probs=64.7

Q ss_pred             CcccccCcccCCHHHHHHHHHHHHHHcCeEEEEeecCceEEEEEeecCCCCeEEEEEEeCCCceEEE
Q 003638          235 NTITGVGQRFSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICI  301 (806)
Q Consensus       235 ~~~~~vG~~F~s~ee~~~a~~~yAi~~gf~~~~~ks~~~r~~~~C~~~gCpwri~as~~~~~~~~~I  301 (806)
                      |+.+.+||+|+|++||+.||..||++++|++++.+|+++|++++|...||||+|+|++.++++.|+|
T Consensus         1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            5678999999999999999999999999999999999999999999999999999999999999986

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.42  E-value=3.4e-12  Score=138.15  Aligned_cols=237  Identities=18%  Similarity=0.158  Sum_probs=176.1

Q ss_pred             CCCCChHHHHHHHHHHhCccccHHHHHHHHHHHHHHHhcChHHHhccHHHHHHHHHHhCCCcEEEEEecCCCceeEEEEE
Q 003638          337 FPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVS  416 (806)
Q Consensus       337 ~~~~~~~~I~~~l~~~~g~~~s~~~~~rak~~~~~~~~g~~~~~~~~L~~~~~~l~~~NPg~~~~~~~~~~~~f~~lF~a  416 (806)
                      ..+++++++.+.+++.++..++-..+.+.-...++.+               ..++..-                     
T Consensus        98 ~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~e~v---------------~~~~~r~---------------------  141 (379)
T COG3328          98 AKGVTTREIEALLEELYGHKVSPSVISVVTDRLDEKV---------------KAWQNRP---------------------  141 (379)
T ss_pred             HcCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHHHHH---------------HHHHhcc---------------------
Confidence            4578999999999999988777777766544444333               2222211                     


Q ss_pred             ccccHHHHhhcCCceEEecccccccc--ccceEEEEeeecCCCCeeeEEEEEecCCCchhHHHHHHHHHHHccCCCCCeE
Q 003638          417 FHASLYGFIQGCRPLLFLDSVPLKSK--YQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPIT  494 (806)
Q Consensus       417 ~~~s~~~f~~~~~~vi~lD~T~~~~~--y~~~ll~a~g~d~~~~~~plafa~v~~E~~esw~wfl~~lk~~~~~~~~p~~  494 (806)
                              . +..+++++|++|++-+  -+..+++|+|++.+|+-..+++.+-..|+ ..|.-||..|+...-..  -..
T Consensus       142 --------l-~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl~~--v~l  209 (379)
T COG3328         142 --------L-GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGLSD--VLL  209 (379)
T ss_pred             --------c-cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhccccc--eeE
Confidence                    1 3568999999999887  45589999999999999999999999999 99999999999884433  266


Q ss_pred             EEecCchhHHHHHHhhcccccccchHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH----HHhcc
Q 003638          495 FVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAAYAPTPEEFERSIES----IKSIS  570 (806)
Q Consensus       495 iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~~~~~~~~~~~~~~~~~~~~a~t~~eF~~~~~~----l~~~~  570 (806)
                      +++|+.+|+.+||..+||.+.++.|..|+.+|+..+...+    .++.+...+..+-.+.+.++-...|..    +....
T Consensus       210 ~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k----~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~y  285 (379)
T COG3328         210 VVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRK----DQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRY  285 (379)
T ss_pred             EecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhh----hhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhc
Confidence            7779999999999999999999999999999999988542    235556666666677777776666655    44567


Q ss_pred             HHHHHHHHhccCCCccc-cccCCCcccccccchhHhhhHHhhhC----CCCCHHHHHHHH
Q 003638          571 LEAYNWILQSEYLNWAN-AFFQGARYNHMTSNFGELFYSWASDA----NELPITQMVDVI  625 (806)
Q Consensus       571 ~~~~~~l~~~~~~~W~~-a~~~~~~~~~~ttN~~Es~n~~lk~~----r~~~i~~l~~~i  625 (806)
                      |....|+.+..-+.|.. +|.+..+-...|||..|++|+.++..    ..+|-...+..+
T Consensus       286 P~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~~~~~~~~fpn~~sv~k~  345 (379)
T COG3328         286 PAILKSWRNALEELLPFFAFPSEIRKIIYTTNAIESLNKLIRRRTKVVGIFPNEESVEKL  345 (379)
T ss_pred             chHHHHHHHHHHHhcccccCcHHHHhHhhcchHHHHHHHHHHHHHhhhccCCCHHHHHHH
Confidence            88888887755555543 33334444577999999999977742    234444444433

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.83  E-value=1.2e-09  Score=72.10  Aligned_cols=28  Identities=50%  Similarity=0.977  Sum_probs=25.5

Q ss_pred             cccccccccccCCcccchhHHhhhcCCC
Q 003638          690 WDCSCKGWQLTGLPCCHAIAVLSCIGCS  717 (806)
Q Consensus       690 ~~CsC~~~~~~GiPC~H~lav~~~~~~~  717 (806)
                      .+|||++|+..||||+|+|+|+...+++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~~   28 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGLS   28 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCCC
Confidence            4799999999999999999999988763

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=98.75  E-value=4.6e-08  Score=85.17  Aligned_cols=69  Identities=22%  Similarity=0.413  Sum_probs=65.4

Q ss_pred             cCCHHHHHHHHHHHHHHcCeEEEEeecCceEEEEEeec------------------------------------------
Q 003638          244 FSSVHEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKA------------------------------------------  281 (806)
Q Consensus       244 F~s~ee~~~a~~~yAi~~gf~~~~~ks~~~r~~~~C~~------------------------------------------  281 (806)
                      |.+++|++.+|+..+...||++.+.+|+.+.+.|+|..                                          
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk   80 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK   80 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence            88999999999999999999999999999999999973                                          


Q ss_pred             CCCCeEEEEEEeCCCceEEEEecCCCccccC
Q 003638          282 EGCPWRIHASRLSTTQLICIKKMNPTHTCEG  312 (806)
Q Consensus       282 ~gCpwri~as~~~~~~~~~I~~~~~~HnC~~  312 (806)
                      .+|||+|+|..+...+.|.|..+++.|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            2699999999999999999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>smart00666 PB1 PB1 domain

Probab=98.55  E-value=5.3e-07  Score=76.84  Aligned_cols=75  Identities=25%  Similarity=0.486  Sum_probs=65.0

Q ss_pred             CCEEEecCceEEEEecCCCChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCC--CeEEEEE
Q 003638           63 GSLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDS--ATTDVFV  140 (806)
Q Consensus        63 g~~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~--~~v~iyv  140 (806)
                      .+++| ||+++.+.+++++||.||+++|.+.|++....++++|.  .+...+++|.+|+|+..|+++....  ....|+|
T Consensus         4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~--Dedgd~v~l~sd~Dl~~a~~~~~~~~~~~l~l~v   80 (81)
T smart00666        4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ--DEDGDLVSLTSDEDLEEAIEEYDSLGSKKLRLHV   80 (81)
T ss_pred             EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE--CCCCCEEEecCHHHHHHHHHHHHHcCCceEEEEe
Confidence            46788 89999999999999999999999999988789999998  4445599999999999999988763  4567765

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.49  E-value=2.4e-07  Score=80.90  Aligned_cols=61  Identities=23%  Similarity=0.369  Sum_probs=53.7

Q ss_pred             HHHHHHHHHcCeEEEEeecCce-------EEEEEeec----------------------CCCCeEEEEEEeCCCceEEEE
Q 003638          252 ELLRKYAIAHQFAFKYKKNDSH-------RVTVKCKA----------------------EGCPWRIHASRLSTTQLICIK  302 (806)
Q Consensus       252 ~a~~~yAi~~gf~~~~~ks~~~-------r~~~~C~~----------------------~gCpwri~as~~~~~~~~~I~  302 (806)
                      ++|+.||...||.++..++.+.       ++.++|++                      +||||+|.+...+ ++.|.|.
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            4799999999999999876543       68899985                      4899999999888 8899999


Q ss_pred             ecCCCccccCc
Q 003638          303 KMNPTHTCEGA  313 (806)
Q Consensus       303 ~~~~~HnC~~~  313 (806)
                      .+..+|||++.
T Consensus        80 ~~~~~HNH~L~   90 (91)
T PF03101_consen   80 SFVLEHNHPLC   90 (91)
T ss_pred             ECcCCcCCCCC
Confidence            99999999975

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=98.07  E-value=2.8e-05  Score=66.17  Aligned_cols=74  Identities=30%  Similarity=0.474  Sum_probs=59.6

Q ss_pred             CEEEecCceEEEEec-CCCChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCC--CCeEEEEE
Q 003638           64 SLSYKGGDAHAIDVD-EQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGD--SATTDVFV  140 (806)
Q Consensus        64 ~~~Y~Gg~~~~i~v~-~~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~--~~~v~iyv  140 (806)
                      +++|.| +.+.+.++ +++||.+|.++|.+.|++....+.++|.  .+...+++|.+|+||+.|++....  ...+.|++
T Consensus         4 K~~~~~-~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~--D~e~d~v~l~sd~Dl~~a~~~~~~~~~~~l~l~v   80 (81)
T cd05992           4 KVKYGG-EIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP--DEDGDLVTISSDEDLEEAIEEARRSGSKKLRLFV   80 (81)
T ss_pred             EEEecC-CCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee--CCCCCEEEeCCHHHHHHHHHHHhhcCCccEEEEe
Confidence            466765 46666666 9999999999999999887667888884  555589999999999999999884  45677775

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.95  E-value=4.5e-06  Score=60.53  Aligned_cols=30  Identities=43%  Similarity=0.835  Sum_probs=27.3

Q ss_pred             eeCcCcccccccccccCCcccchhHHhhhc
Q 003638          685 VDIDHWDCSCKGWQLTGLPCCHAIAVLSCI  714 (806)
Q Consensus       685 Vdl~~~~CsC~~~~~~GiPC~H~lav~~~~  714 (806)
                      +++...+|||..|+..|.||+|++|++...
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~   39 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLAL   39 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhh
Confidence            667889999999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.89  E-value=9e-05  Score=62.70  Aligned_cols=73  Identities=25%  Similarity=0.417  Sum_probs=62.8

Q ss_pred             EEEecCceEEEEecCCCChHHHHHHHHHHcCCCC-ccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCC--CeEEEEE
Q 003638           65 LSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSF-NAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDS--ATTDVFV  140 (806)
Q Consensus        65 ~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~-~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~--~~v~iyv  140 (806)
                      +.| ||+...+.++.+++|.+|.+++.+.|+++. +.+.++|.  .+..-.++|++|.||+.-++.+...  ..|.+||
T Consensus         5 ~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~--Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v   80 (82)
T cd06407           5 ATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL--DDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLV   80 (82)
T ss_pred             EEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE--CCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEe
Confidence            445 778999999999999999999999999876 79999994  5558899999999999998877664  5788887

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.89  E-value=5.7e-05  Score=64.76  Aligned_cols=75  Identities=31%  Similarity=0.476  Sum_probs=62.3

Q ss_pred             EEEecCceEEEEecCCCChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCC--CCeEEEEEE
Q 003638           65 LSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGD--SATTDVFVI  141 (806)
Q Consensus        65 ~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~--~~~v~iyv~  141 (806)
                      ++|.|+..+.+.+++++||.+|..+|.+.|+.....+.++|.  .+..-+|+|++|+||..|++....  ...+.++|.
T Consensus         6 ~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~--D~dgD~V~i~sd~Dl~~a~~~~~~~~~~~lrl~v~   82 (84)
T PF00564_consen    6 VRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK--DEDGDLVTISSDEDLQEAIEQAKESGSKTLRLFVQ   82 (84)
T ss_dssp             EEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE--ETTSSEEEESSHHHHHHHHHHHHHCTTSCEEEEEE
T ss_pred             EEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee--CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            556555555699999999999999999999988789999995  444589999999999999998754  347888885

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=97.48  E-value=0.00038  Score=58.73  Aligned_cols=62  Identities=19%  Similarity=0.348  Sum_probs=53.3

Q ss_pred             EEEecCceEEEEecCCCChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcC
Q 003638           65 LSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNG  131 (806)
Q Consensus        65 ~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~  131 (806)
                      ++| +|+++.|.|+.+++|.||..+|.++|++. +.++++|.  .+ ..+++|+++.||+.-+.-..
T Consensus         7 v~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk--DE-GD~iti~sq~DLd~Ai~~a~   68 (86)
T cd06408           7 VHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK--DD-GDMITMGDQDDLDMAIDTAR   68 (86)
T ss_pred             EEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE--cC-CCCccccCHHHHHHHHHHHH
Confidence            444 56799999999999999999999999985 79999995  44 78999999999998776554

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=97.39  E-value=0.0006  Score=56.49  Aligned_cols=67  Identities=13%  Similarity=0.239  Sum_probs=56.7

Q ss_pred             CEEEecCceEEEEecCCCChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCCC
Q 003638           64 SLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSA  134 (806)
Q Consensus        64 ~~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~~  134 (806)
                      +|+|.+  +-.|.|+.+++|++|..||++.|.+..+.++|.|.= .....++++ +|+|++.++....++.
T Consensus         6 KV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd-e~s~~~v~l-~d~dle~aws~~~~~~   72 (80)
T cd06406           6 KVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS-EASGEDVIL-SDTNMEDVWSQAKDGC   72 (80)
T ss_pred             EEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc-CCCCCccCc-ChHHHHHHHHhhcCCe
Confidence            478887  999999999999999999999999988899999952 223456777 8999999999887664

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=96.97  E-value=0.0079  Score=51.97  Aligned_cols=74  Identities=20%  Similarity=0.394  Sum_probs=59.2

Q ss_pred             EEEecCceEEEEecC-----CCChHHHHHHHHHHcCCCC-ccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCC---CCe
Q 003638           65 LSYKGGDAHAIDVDE-----QMKFNDFKTEVAEMFNCSF-NAILLKYFLPGNKKTLITISNDKDLQRMIKFNGD---SAT  135 (806)
Q Consensus        65 ~~Y~Gg~~~~i~v~~-----~~s~~e~~~~l~~~~~~~~-~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~---~~~  135 (806)
                      +.| ||+.+-+.++.     +++|.+|..|+.+.|++.. ..+.++|.  .+....++|.+|+||..-++....   ...
T Consensus         5 v~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~--Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~   81 (91)
T cd06398           5 VKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT--DEDGDVVTLVDDNDLTDAIQYFCSGSRLNP   81 (91)
T ss_pred             EEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE--CCCCCEEEEccHHHHHHHHHHHhccCCCce
Confidence            456 66777777774     6999999999999999987 58999994  556789999999999998887522   245


Q ss_pred             EEEEEE
Q 003638          136 TDVFVI  141 (806)
Q Consensus       136 v~iyv~  141 (806)
                      +.|+|.
T Consensus        82 lrl~v~   87 (91)
T cd06398          82 LRIDVT   87 (91)
T ss_pred             EEEEEE
Confidence            777774

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.72  E-value=0.012  Score=49.12  Aligned_cols=69  Identities=13%  Similarity=0.273  Sum_probs=57.5

Q ss_pred             cCceEEEEecC--CCChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCCC-eEEEEEE
Q 003638           69 GGDAHAIDVDE--QMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSA-TTDVFVI  141 (806)
Q Consensus        69 Gg~~~~i~v~~--~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~~-~v~iyv~  141 (806)
                      ||++..+.++.  +++|.+|..++.+.|+++  .+.+||-  .+..-.+.|++|.||+..++.....+ .+.+.|.
T Consensus         8 ~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYl--Dde~e~v~lssd~eLeE~~rl~~~~~~~l~~~v~   79 (81)
T cd06396           8 NGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYV--DEENEEVSVNSQGEYEEALKSAVRQGNLLQMNVY   79 (81)
T ss_pred             CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEE--cCCCCEEEEEchhhHHHHHHHHHhCCCEEEEEEe
Confidence            56677778877  889999999999999988  8999993  55678899999999999999877764 5677663

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=96.25  E-value=0.026  Score=48.10  Aligned_cols=64  Identities=19%  Similarity=0.267  Sum_probs=53.3

Q ss_pred             EEecCCCChHHHHHHHHHHc-CCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCCCeEEEEEE
Q 003638           75 IDVDEQMKFNDFKTEVAEMF-NCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVI  141 (806)
Q Consensus        75 i~v~~~~s~~e~~~~l~~~~-~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~~~v~iyv~  141 (806)
                      ++.+..+||.+|..++.++| ++....++++|.  .+..-||+|++|++|..-+.... .+.+.+||.
T Consensus        21 l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~--DeeGDlvtIssdeEL~~A~~~~~-~~~~RlyI~   85 (87)
T cd06402          21 IDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWK--DEEGDLVAFSSDEELVMALGSLN-DDTFRIYIK   85 (87)
T ss_pred             ecCCCCcCHHHHHHHHHHHccccCCCcEEEEEE--CCCCCEEeecCHHHHHHHHHcCC-CCcEEEEEE
Confidence            55566779999999999998 454569999994  66678999999999999888877 567899984

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=96.17  E-value=0.035  Score=45.68  Aligned_cols=65  Identities=20%  Similarity=0.360  Sum_probs=53.5

Q ss_pred             EEEecCceEEEEecCCCChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCC
Q 003638           65 LSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGD  132 (806)
Q Consensus        65 ~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~  132 (806)
                      +.| ||.+|-+..+..-||.+|.+||...|++...++.+.|.  .+..-.|+|++|+||+.-+.....
T Consensus         5 v~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi--DeD~D~ITlssd~eL~d~~~~~~~   69 (82)
T cd06397           5 SSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI--DNDNDEITLSSNKELQDFYRLSHR   69 (82)
T ss_pred             EEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE--cCCCCEEEecchHHHHHHHHhccc
Confidence            445 45666677899999999999999999998888999994  444588999999999997775544

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.16  E-value=0.033  Score=46.45  Aligned_cols=63  Identities=19%  Similarity=0.333  Sum_probs=52.5

Q ss_pred             cCceEEEEecCCCChHHHHHHHHHHcCCCCc-cEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCC
Q 003638           69 GGDAHAIDVDEQMKFNDFKTEVAEMFNCSFN-AILLKYFLPGNKKTLITISNDKDLQRMIKFNGDS  133 (806)
Q Consensus        69 Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~-~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~  133 (806)
                      +|+..++.++.++||.+|..++.+++.+... .+++||.  .+.--++++++|++|+.-+..+..+
T Consensus         8 ~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~--DEEGDp~tiSS~~EL~EA~rl~~~n   71 (83)
T cd06404           8 NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI--DEEGDPCTISSQMELEEAFRLYELN   71 (83)
T ss_pred             cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE--CCCCCceeecCHHHHHHHHHHHHhc
Confidence            5677888999999999999999999988774 8999994  5566789999999999766655443

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development

Probab=95.97  E-value=0.063  Score=43.39  Aligned_cols=66  Identities=26%  Similarity=0.478  Sum_probs=54.8

Q ss_pred             CceEEEEecCCCChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCC---CeEEEEEE
Q 003638           70 GDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDS---ATTDVFVI  141 (806)
Q Consensus        70 g~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~---~~v~iyv~  141 (806)
                      |+.++|..+|-+.|.|+..|+.+.||   +++.+.|+.   ..-+|||.+-+||++-++..+.+   .+..|++.
T Consensus         9 gEKRIi~f~RPvkf~dl~~kv~~afG---q~mdl~ytn---~eL~iPl~~Q~DLDkAie~ld~s~~~ksLRilL~   77 (79)
T cd06405           9 GEKRIIQFPRPVKFKDLQQKVTTAFG---QPMDLHYTN---NELLIPLKNQEDLDRAIELLDRSPHMKSLRILLS   77 (79)
T ss_pred             CceEEEecCCCccHHHHHHHHHHHhC---CeeeEEEec---ccEEEeccCHHHHHHHHHHHccCccccceeEeEe
Confidence            68899999999999999999999986   678899963   34899999999999977765554   55677663

The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=95.96  E-value=0.033  Score=46.02  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=56.6

Q ss_pred             eEEEEecCCCChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCCC
Q 003638           72 AHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSA  134 (806)
Q Consensus        72 ~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~~  134 (806)
                      |-.|.|+++.+|++|..+|+++|..-.+..+|.|.-|++...+++++.|++++.+.....++.
T Consensus         8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~aW~~v~~~~   70 (78)
T cd06411           8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQRAWQDVADGP   70 (78)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHHHHHhccCCc
Confidence            668999999999999999999999999999999987777768999999999999988776653

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.31  E-value=0.16  Score=41.80  Aligned_cols=70  Identities=19%  Similarity=0.340  Sum_probs=57.5

Q ss_pred             EecCceEEEEecCC--CChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCCCeEEEEE
Q 003638           67 YKGGDAHAIDVDEQ--MKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFV  140 (806)
Q Consensus        67 Y~Gg~~~~i~v~~~--~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~~~v~iyv  140 (806)
                      +-|++.|-.+++++  .||.||-+.|....++...++.++|.=|  ..-|+||.+|+.+..-+.-.  ..-..|||
T Consensus         6 kfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~--~gDLLPInNDdNf~kAlssa--~plLRl~i   77 (80)
T cd06403           6 KFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDP--HGDLLPINNDDNFLKALSSA--NPLLRIFI   77 (80)
T ss_pred             ccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCC--CCCEecccCcHHHHHHHHcC--CCceEEEE
Confidence            44678888888887  8999999999999999888999999755  56799999999999988733  33467776

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.14  E-value=0.11  Score=44.10  Aligned_cols=70  Identities=14%  Similarity=0.298  Sum_probs=58.8

Q ss_pred             cCceEEEEecCCCChHHHHHHHHHHcCCCC---ccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCC--CeEEEEE
Q 003638           69 GGDAHAIDVDEQMKFNDFKTEVAEMFNCSF---NAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDS--ATTDVFV  140 (806)
Q Consensus        69 Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~---~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~--~~v~iyv  140 (806)
                      .|+++-+.+..+.++.+|++.+...+|.+.   ..+.|+|.  .+..-.+.|++|.||...+++....  ..++++|
T Consensus         9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl--DDEgD~VllT~D~DL~e~v~iar~~g~~~v~L~v   83 (86)
T cd06409           9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV--DDEGDIVLITSDSDLVAAVLVARSAGLKKLDLHL   83 (86)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE--cCCCCEEEEeccchHHHHHHHHHHcCCCEEEEEE
Confidence            577888888878999999999999999987   58889993  5556788999999999999877655  5688887

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.02  E-value=0.015  Score=33.94  Aligned_cols=18  Identities=28%  Similarity=0.693  Sum_probs=16.3

Q ss_pred             EeCCCCCCCCCCcCcCCC
Q 003638          787 LQCSKCKGLGHNKSTCKE  804 (806)
Q Consensus       787 ~~Cs~C~~~GHn~~tC~~  804 (806)
                      ++|-+|++.||-.+.||+
T Consensus         1 ~~C~~C~~~GH~~~~Cp~   18 (18)
T PF00098_consen    1 RKCFNCGEPGHIARDCPK   18 (18)
T ss_dssp             SBCTTTSCSSSCGCTSSS
T ss_pred             CcCcCCCCcCcccccCcc
Confidence            379999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=95.01  E-value=0.096  Score=43.60  Aligned_cols=60  Identities=23%  Similarity=0.469  Sum_probs=49.3

Q ss_pred             cCceEEEEecC-CCChHHHHHHHHHHcCCCC---ccEEEEEEcCCCCceeEEEeChHHHHHHHHhc
Q 003638           69 GGDAHAIDVDE-QMKFNDFKTEVAEMFNCSF---NAILLKYFLPGNKKTLITISNDKDLQRMIKFN  130 (806)
Q Consensus        69 Gg~~~~i~v~~-~~s~~e~~~~l~~~~~~~~---~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~  130 (806)
                      ||+.|.+.++. .+||.||+..+...|+...   .++.+||.  .+...|++|.+++||.--+...
T Consensus         8 g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYk--D~dGDlVTIts~~dL~~A~~~~   71 (81)
T cd06401           8 GDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYK--DEDGDLITIFDSSDLSFAIQCS   71 (81)
T ss_pred             CCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEE--CCCCCEEEeccHHHHHHHHhcC
Confidence            88999999986 4899999999998887443   48999994  5567899999999998765544

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=93.52  E-value=0.17  Score=40.11  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=33.3

Q ss_pred             ceEEEEEeecCCCCeEEEEEEeCCCceEEEEecCCCcccc
Q 003638          272 SHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCE  311 (806)
Q Consensus       272 ~~r~~~~C~~~gCpwri~as~~~~~~~~~I~~~~~~HnC~  311 (806)
                      -.|..++|+..+||++-.+.+..++....++++.++|||+
T Consensus        20 ~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   20 YPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             CEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            4577899999999999999998878888899999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=93.49  E-value=0.1  Score=54.46  Aligned_cols=93  Identities=14%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             EEeccccccccccceEEEEeeecC--CCCeeeEEEEEecCCCchhHHHHHHHH-HHHccCCCCCeEEEecCchhHHHHHH
Q 003638          432 LFLDSVPLKSKYQGTLLAATAADG--DDGVFPVAFAVVDAETNDDWHWFLLQL-KSALSTATCPITFVADKQKGLRESIA  508 (806)
Q Consensus       432 i~lD~T~~~~~y~~~ll~a~g~d~--~~~~~plafa~v~~E~~esw~wfl~~l-k~~~~~~~~p~~iisD~~~~l~~Ai~  508 (806)
                      |+||=+.....+..  +..+.+|.  +++.   -+.++++-+.++..-||..+ -.....  ...+|++|...+..+|++
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~---il~i~~~r~~~~l~~~~~~~~~~~~~~--~v~~V~~Dm~~~y~~~~~   73 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGR---ILDILPGRDKETLKDFFRSLYPEEERK--NVKVVSMDMSPPYRSAIR   73 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCce---EEEEcCCccHHHHHHHHHHhCcccccc--ceEEEEcCCCcccccccc
Confidence            35565554433332  33444454  3333   24588889999988888876 333222  369999999999999999


Q ss_pred             hhcccccccchHHHHHHHHHHHh
Q 003638          509 EIFKGSFHGYCLRYLTEQLVKDL  531 (806)
Q Consensus       509 ~vfP~a~h~~C~~Hi~~n~~~~~  531 (806)
                      +.||+|.+..-.|||++++.+.+
T Consensus        74 ~~~P~A~iv~DrFHvvk~~~~al   96 (249)
T PF01610_consen   74 EYFPNAQIVADRFHVVKLANRAL   96 (249)
T ss_pred             ccccccccccccchhhhhhhhcc
Confidence            99999999999999999988866

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=93.33  E-value=1.5  Score=50.35  Aligned_cols=92  Identities=13%  Similarity=0.123  Sum_probs=68.7

Q ss_pred             CCCchhHHHHHHHHHHHccCCCC-CeEEEecCchhHHHHHHhhcccccccchHHHHHHHHHHHhcccccHHHHHHHHHHH
Q 003638          469 AETNDDWHWFLLQLKSALSTATC-PITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDF  547 (806)
Q Consensus       469 ~E~~esw~wfl~~lk~~~~~~~~-p~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~~~~~~~~~~~~~~~  547 (806)
                      ..+.+-|.-+.+.+.+....... -.++.+|+...+.+++. .||.+.|.+..+|+.+.+.+.++..  .+    +.+.+
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~--~~----~~~~~  307 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHD--PE----LKEKI  307 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhC--hH----HHHHH
Confidence            45677899888888877654422 37788999999988776 9999999999999999999988542  12    33444


Q ss_pred             HHHhcCCCHHHHHHHHHHHH
Q 003638          548 YAAAYAPTPEEFERSIESIK  567 (806)
Q Consensus       548 ~~~~~a~t~~eF~~~~~~l~  567 (806)
                      +++.+.....+++..++.+.
T Consensus       308 ~~al~~~d~~~l~~~L~~~~  327 (470)
T PF06782_consen  308 RKALKKGDKKKLETVLDTAE  327 (470)
T ss_pred             HHHHHhcCHHHHHHHHHHHH
Confidence            55556667777777776655

>PF15288 zf-CCHC_6: Zinc knuckle

Probab=93.30  E-value=0.04  Score=39.12  Aligned_cols=19  Identities=26%  Similarity=0.912  Sum_probs=16.4

Q ss_pred             eEeCCCCCCCCCCc--CcCCC
Q 003638          786 QLQCSKCKGLGHNK--STCKE  804 (806)
Q Consensus       786 ~~~Cs~C~~~GHn~--~tC~~  804 (806)
                      +++|++|++.||.+  ++||.
T Consensus         1 k~kC~~CG~~GH~~t~k~CP~   21 (40)
T PF15288_consen    1 KVKCKNCGAFGHMRTNKRCPM   21 (40)
T ss_pred             CccccccccccccccCccCCC
Confidence            36899999999998  77875

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=93.08  E-value=0.042  Score=51.97  Aligned_cols=81  Identities=17%  Similarity=0.111  Sum_probs=67.0

Q ss_pred             CceEEeccccccccccceEEEEeeecCCCCeeeEEEEEecCCCchhHHHHHHHHHHHccCCCCCeEEEecCchhHHHHHH
Q 003638          429 RPLLFLDSVPLKSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIA  508 (806)
Q Consensus       429 ~~vi~lD~T~~~~~y~~~ll~a~g~d~~~~~~plafa~v~~E~~esw~wfl~~lk~~~~~~~~p~~iisD~~~~l~~Ai~  508 (806)
                      ++.+.+|-||.+-+-+ ..+...++|.+++  .|++-|...-+...=..||..+.+....  .|..|+||+.++...|++
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~~--~p~~ivtDk~~aY~~A~~   75 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHRG--EPRVIVTDKLPAYPAAIK   75 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeecc--ccceeecccCCccchhhh
Confidence            3678999999874433 3444678899999  8899999999999888999888877763  489999999999999999


Q ss_pred             hhcccc
Q 003638          509 EIFKGS  514 (806)
Q Consensus       509 ~vfP~a  514 (806)
                      ++++..
T Consensus        76 ~l~~~~   81 (140)
T PF13610_consen   76 ELNPEG   81 (140)
T ss_pred             hccccc
Confidence            999874

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=92.63  E-value=0.28  Score=51.97  Aligned_cols=131  Identities=17%  Similarity=0.185  Sum_probs=82.0

Q ss_pred             CCChHHHHHHHHHHhCccccHHHHHHHHHHHHHHHhcChHHHhccHHHHHHHHHHhCCCcEEEEEecCCCceeEEEEEcc
Q 003638          339 NYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFH  418 (806)
Q Consensus       339 ~~~~~~I~~~l~~~~g~~~s~~~~~rak~~~~~~~~g~~~~~~~~L~~~~~~l~~~NPg~~~~~~~~~~~~f~~lF~a~~  418 (806)
                      .++...+.+.+.+. |+.+|.+.+.+.-..+.+.+..           ..+.+.+.                        
T Consensus        20 ~lp~~r~~~~~~~~-G~~is~~ti~~~~~~~~~~l~~-----------~~~~l~~~------------------------   63 (271)
T PF03050_consen   20 HLPLYRIQQMLEDL-GITISRGTIANWIKRVAEALKP-----------LYEALKEE------------------------   63 (271)
T ss_pred             CCCHHHHhhhhhcc-ceeeccchhHhHhhhhhhhhhh-----------hhhhhhhh------------------------
Confidence            44455566666666 9999999998876544433221           11222211                        


Q ss_pred             ccHHHHhhcCCceEEecccccc----cccc-ceEEEEeeecCCCCeeeEEEEEecCCCchhHHHHHHHHHHHccCCCCCe
Q 003638          419 ASLYGFIQGCRPLLFLDSVPLK----SKYQ-GTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPI  493 (806)
Q Consensus       419 ~s~~~f~~~~~~vi~lD~T~~~----~~y~-~~ll~a~g~d~~~~~~plafa~v~~E~~esw~wfl~~lk~~~~~~~~p~  493 (806)
                            . --.+|+.+|-|...    ++.. +-+-++.+-+      .+.|.+.++-+.+...-+|..       .  .-
T Consensus        64 ------~-~~~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~L~~-------~--~G  121 (271)
T PF03050_consen   64 ------L-RSSPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEFLGD-------F--SG  121 (271)
T ss_pred             ------c-cccceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhhhcc-------c--ce
Confidence                  1 13578888888866    4433 3333333333      556666666666655555433       2  36


Q ss_pred             EEEecCchhHHHHHHhhcccccccchHHHHHHHHHHHhc
Q 003638          494 TFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLK  532 (806)
Q Consensus       494 ~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~  532 (806)
                      +++||+-.+-..     +....|+.|+.|+.+.|.+...
T Consensus       122 ilvsD~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~  155 (271)
T PF03050_consen  122 ILVSDGYSAYNK-----LAGITHQLCWAHLRRDFQDAAE  155 (271)
T ss_pred             eeeccccccccc-----cccccccccccccccccccccc
Confidence            899999888754     3378999999999999988774

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=90.30  E-value=0.62  Score=51.17  Aligned_cols=56  Identities=16%  Similarity=0.471  Sum_probs=50.4

Q ss_pred             cCcccCCHHHHHHHHHHHHHHcCeEEEEeecC-ceEEEEEeecCCCCeEEEEEEeCC
Q 003638          240 VGQRFSSVHEFRELLRKYAIAHQFAFKYKKND-SHRVTVKCKAEGCPWRIHASRLST  295 (806)
Q Consensus       240 vG~~F~s~ee~~~a~~~yAi~~gf~~~~~ks~-~~r~~~~C~~~gCpwri~as~~~~  295 (806)
                      .+..|++.++-+.+|+.|..+.+..|..+.|. .+.++|.|....|||+|..+..+.
T Consensus        24 ~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g~   80 (496)
T PF04684_consen   24 QARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCGN   80 (496)
T ss_pred             cccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeeccc
Confidence            47789999999999999999999999999885 467999999999999999887654

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=88.64  E-value=1.2  Score=37.08  Aligned_cols=64  Identities=8%  Similarity=0.038  Sum_probs=45.9

Q ss_pred             cCceEEEEecCCCChHHHHHHHHHHcCCCCccEEEEEEcCCCCceeEEEeChHHHHHHHHhcCCCCeEEEEE
Q 003638           69 GGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFV  140 (806)
Q Consensus        69 Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~l~~~~~~l~~~~~D~dl~~M~~~~~~~~~v~iyv  140 (806)
                      +|.+..|.|+.++|-.+++.+|.+..|+.+....| |.-..       +.+|+....-...-.++..+.+|+
T Consensus        11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~-------L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799          11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQR-------LARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCe-------eCCCcCCHHHcCCCCCCCEEEEEe
Confidence            57788899999999999999999999999999988 73211       344433333333333456777775

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.13  E-value=0.9  Score=35.82  Aligned_cols=46  Identities=15%  Similarity=0.361  Sum_probs=25.4

Q ss_pred             cCeEEEEeecCceEEEEEeecC---CCCeEEEEEEeCCCceEEEEecCCCccc
Q 003638          261 HQFAFKYKKNDSHRVTVKCKAE---GCPWRIHASRLSTTQLICIKKMNPTHTC  310 (806)
Q Consensus       261 ~gf~~~~~ks~~~r~~~~C~~~---gCpwri~as~~~~~~~~~I~~~~~~HnC  310 (806)
                      .|+.|...+........+|+..   +|+++|...    .+.-.|.....+|||
T Consensus        14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~----~~~~~~~~~~~~HnH   62 (62)
T PF04500_consen   14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD----AGDGRVVRTNGEHNH   62 (62)
T ss_dssp             TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE------TTEEEE-S---SS
T ss_pred             CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE----CCCCEEEECCCccCC
Confidence            4777888777788889999864   899999987    223345666688987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF13696 zf-CCHC_2: Zinc knuckle

Probab=87.33  E-value=0.35  Score=32.69  Aligned_cols=20  Identities=25%  Similarity=0.597  Sum_probs=18.0

Q ss_pred             ceEeCCCCCCCCCCcCcCCC
Q 003638          785 RQLQCSKCKGLGHNKSTCKE  804 (806)
Q Consensus       785 ~~~~Cs~C~~~GHn~~tC~~  804 (806)
                      ..+.|.+|++.||-.+.||.
T Consensus         7 ~~Y~C~~C~~~GH~i~dCP~   26 (32)
T PF13696_consen    7 PGYVCHRCGQKGHWIQDCPT   26 (32)
T ss_pred             CCCEeecCCCCCccHhHCCC
Confidence            35799999999999999996

>smart00774 WRKY DNA binding domain

Probab=87.21  E-value=0.82  Score=35.93  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=32.2

Q ss_pred             ceEEEEEeec-CCCCeEEEEEEeCCCceEEEEecCCCccc
Q 003638          272 SHRVTVKCKA-EGCPWRIHASRLSTTQLICIKKMNPTHTC  310 (806)
Q Consensus       272 ~~r~~~~C~~-~gCpwri~as~~~~~~~~~I~~~~~~HnC  310 (806)
                      -.|..++|+. .|||++=.+.+..++....+.++.++|||
T Consensus        20 ~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       20 FPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            3466789998 89999888877766667778889999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF13565 HTH_32: Homeodomain-like domain

Probab=81.88  E-value=2.7  Score=34.84  Aligned_cols=38  Identities=21%  Similarity=0.480  Sum_probs=33.3

Q ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHhCccc--cHHHHHHH
Q 003638          328 SIIKEKLKVFPNYKPKDIVNDIKQEYGIQL--NYFQAWRG  365 (806)
Q Consensus       328 ~~i~~~i~~~~~~~~~~I~~~l~~~~g~~~--s~~~~~ra  365 (806)
                      ..|.+.+..+|.+++.+|.+.|.+++|+.+  |.+.+||.
T Consensus        37 ~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~   76 (77)
T PF13565_consen   37 ERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI   76 (77)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence            566677788999999999999999999876  99999884

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=80.92  E-value=15  Score=37.02  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=82.5

Q ss_pred             HHHHHHhCccccHHHHHHHHHHHHHHHhcChHHHhccHHHHHHHHHHhCCCcEEEEEecCCCceeEEEEEccccHHHHhh
Q 003638          347 NDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQ  426 (806)
Q Consensus       347 ~~l~~~~g~~~s~~~~~rak~~~~~~~~g~~~~~~~~L~~~~~~l~~~NPg~~~~~~~~~~~~f~~lF~a~~~s~~~f~~  426 (806)
                      +.+..+.|+.+.+.++.|.-++.-              |.+...+.+.++.                             
T Consensus        32 ~e~l~~rgi~v~h~Ti~rwv~k~~--------------~~~~~~~~~r~~~-----------------------------   68 (215)
T COG3316          32 EEMLAERGIEVDHETIHRWVQKYG--------------PLLARRLKRRKRK-----------------------------   68 (215)
T ss_pred             HHHHHHcCcchhHHHHHHHHHHHh--------------HHHHHHhhhhccc-----------------------------
Confidence            345667899999998888644322              2233444444322                             


Q ss_pred             cCCceEEeccccccccccceEEEEeeecCCCCeeeEEEEEecCCCchhHHHHHHHHHHHccCCCCCeEEEecCchhHHHH
Q 003638          427 GCRPLLFLDSVPLKSKYQGTLLAATAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRES  506 (806)
Q Consensus       427 ~~~~vi~lD~T~~~~~y~~~ll~a~g~d~~~~~~plafa~v~~E~~esw~wfl~~lk~~~~~~~~p~~iisD~~~~l~~A  506 (806)
                       -++.+.+|-||.+-+-++. +.--++|.+|  .++.+-+...-+...=.-||..+.+.. +  .|.+|+||+.+....|
T Consensus        69 -~~~~w~vDEt~ikv~gkw~-ylyrAid~~g--~~Ld~~L~~rRn~~aAk~Fl~kllk~~-g--~p~v~vtDka~s~~~A  141 (215)
T COG3316          69 -AGDSWRVDETYIKVNGKWH-YLYRAIDADG--LTLDVWLSKRRNALAAKAFLKKLLKKH-G--EPRVFVTDKAPSYTAA  141 (215)
T ss_pred             -cccceeeeeeEEeeccEee-ehhhhhccCC--CeEEEEEEcccCcHHHHHHHHHHHHhc-C--CCceEEecCccchHHH
Confidence             3467888888876443332 2234556664  467888888888887788888877776 3  4899999999999999


Q ss_pred             HHhhccccccc
Q 003638          507 IAEIFKGSFHG  517 (806)
Q Consensus       507 i~~vfP~a~h~  517 (806)
                      +.++-+...|+
T Consensus       142 ~~~l~~~~ehr  152 (215)
T COG3316         142 LRKLGSEVEHR  152 (215)
T ss_pred             HHhcCcchhee
Confidence            99998755554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	806
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 3e-05
 Identities = 74/539 (13%), Positives = 157/539 (29%), Gaps = 169/539 (31%)

Query: 7   RLFRVLCDLVNGEGPIITTKFEVFEASLLQFYEKVMAGDKIIAICQ----LGGEFETDKD 62
           RLF  L      E   +  KF   E  L   Y+ +M    I    +    +   +   +D
Sbjct: 66  RLFWTLLS--KQEE--MVQKF--VEEVLRINYKFLM--SPIKTEQRQPSMMTRMYIEQRD 117

Query: 63  GSLSYKGGDAHA-IDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITIS--N 119
               Y      A  +V     +   +  + E+        +L   + G+ KT + +    
Sbjct: 118 --RLYNDNQVFAKYNVSRLQPYLKLRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 120 DKDLQRM-------IKFNGDSATTDVFVILEEI---VEPDVSNMPASRSSRTTLSESVPP 169
              +Q         +     ++   V  +L+++   ++P+ ++     S+      S+  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ- 231

Query: 170 VDVVDDMVDGN------IIPLGASLDDVVDTNHID-MNID--------DTQI-------- 206
              +  ++         ++     L +V +    +  N+           Q+        
Sbjct: 232 -AELRRLLKSKPYENCLLV-----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 207 -------------------------------DLPDEISPILPLT----GSNDEKHVKTAQ 231
                                          DLP E+    P        +    + T  
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 232 QWQ----NTITGVGQRFSSV---HEFRELLRKYAIAHQFAFKYKKNDSHRVTVKCKAEGC 284
            W+    + +T + +   +V    E+R++  + ++   F        +H           
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---F-----PPSAH----------- 386

Query: 285 PWRIHASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKD 344
              I       T L+ +   +   +    VV   N+  +    S++++        +PK+
Sbjct: 387 ---I------PTILLSLIWFDVIKSDVMVVV---NKLHKY---SLVEK--------QPKE 423

Query: 345 IVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLATFTT 404
               I     I L      + K   +  L  S  + YN    F    +            
Sbjct: 424 STISI---PSIYLEL----KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY-------- 468

Query: 405 KEDSSFHRLFVSFHASLYGFIQGCR----PLLFLDSVPLKSK--YQGTLLAATAADGDD 457
             D  F+   +  H  L       R     ++FLD   L+ K  +  T   A+ +  + 
Sbjct: 469 -LDQYFYS-HIGHH--LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 8e-05
 Identities = 62/406 (15%), Positives = 112/406 (27%), Gaps = 130/406 (32%)

Query: 339 NYKPKDIVNDIKQEYGIQLNYF-------QAWRGKEI-----AKEQLQGSY--------- 377
            Y+ KDI++  +  +    +              +EI     +K+ + G+          
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 378 -KEAYNQLPLFCERIMETNPGSLAT---FTTKEDSSFHRLFVSFHASLYG----FIQG-- 427
            +E   +   F E ++  N   L +      ++ S   R+++     LY     F +   
Sbjct: 75  QEEMVQK---FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 428 CRP---------LLFLDSVPL----------KSKYQGTLLAATAADG------DDGVFPV 462
            R          LL L               K+     +              D  +F +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----WVALDVCLSYKVQCKMDFKIFWL 187

Query: 463 AFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEI-------FKGSF 515
                ++         L  L+  L       T  +D    ++  I  I        K   
Sbjct: 188 NLKNCNSPETV-----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 516 HGYCLRYLTEQLVKDLK--GQFSHEVKRLM------IEDFYAAAYAPTPEEFERSIESIK 567
           +  CL  L    V++ K    F+   K L+      + DF +AA                
Sbjct: 243 YENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT-------------T 287

Query: 568 SISLEAYNWIL-QSEYLNWANAFFQGARYNHMTSNFGELFYSWAS-DANELPITQMVDV- 624
            ISL+ ++  L   E                       L   +      +LP  +++   
Sbjct: 288 HISLDHHSMTLTPDEVK--------------------SLLLKYLDCRPQDLPR-EVLTTN 326

Query: 625 --IRGKIMELIYTRRTDSNQWLTRLTPSMEEKLEKESLKVRSLQVL 668
                 I E I       + W       +   +E       SL VL
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES------SLNVL 366

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	806
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	96.3
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	95.05
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	91.14
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	90.9
d2c60a1	80	Mitogen-activated protein kinase kinase kinase 3,	90.77
d2nptb1	82	Mitogen-activated protein kinase kinase kinase 2,	90.06

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.006  Score=34.72  Aligned_cols=60  Identities=12%  Similarity=0.176  Sum_probs=49.9

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHCCC
Q ss_conf             6925899936998959999999988078876389999818998403997184889999974189
Q 003638           69 GGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGD  132 (806)
Q Consensus        69 Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~  132 (806)
                      +++.+.+.++.+++|.+|..++.+.|+.  .++.+||.  .+..-++.|.+|+||..+++-...
T Consensus        20 ~~D~~~~~l~~~it~~dL~~kI~~rf~~--~~~~lkY~--Dedgd~v~i~sD~Dl~~ai~~~~k   79 (85)
T d1ip9a_          20 KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTK--LFDGSGEEIKTDSQVSNIIQAKLK   79 (85)
T ss_dssp             TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEEC--CSSSCCSCCCSHHHHHHHHHTTCC
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHCC--CCEEEEEE--CCCCCEEEEECHHHHHHHHHHCCC
T ss_conf             9929999937998899999999998587--83689999--689997898378999999972282

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.082  Score=26.89  Aligned_cols=72  Identities=14%  Similarity=0.339  Sum_probs=55.2

Q ss_pred             EEEECCCEEE--EEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHC-CCCCEEEEEEE
Q ss_conf             8972692589--99369989599999999880788763899998189984039971848899999741-89773999997
Q 003638           65 LSYKGGDAHA--IDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFN-GDSATTDVFVI  141 (806)
Q Consensus        65 ~~Y~Gg~~~~--i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~-~~~~~v~iyv~  141 (806)
                      +.| ||++.-  +..+.+++|.+|..+|...|+++  .+.+||.  .+..-.+.|++|+||+..++.. ..++++.+.|.
T Consensus         9 vtf-~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~--~~~lkY~--Ddd~e~v~l~~d~dl~E~~~~a~~~~~~irl~v~   83 (85)
T d2bkfa1           9 VTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL--DEENEEVSINSQGEYEEALKMAVKQGNQLQMQVH   83 (85)
T ss_dssp             EEE-TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEE--CTTSCEEEECSHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred             EEE-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCC--CCEEEEE--CCCCCEEEEECHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             998-7845899964887776999999999866966--4138987--5999989980688899999998668988999996

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.14  E-value=0.18  Score=24.54  Aligned_cols=42  Identities=24%  Similarity=0.364  Sum_probs=35.6

Q ss_pred             CEEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf             649999952489970999998089760799951898644584
Q 003638          272 SHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGA  313 (806)
Q Consensus       272 ~~r~~~~C~~~gCpwri~as~~~~~~~~~I~~~~~~HtC~~~  313 (806)
                      ..|-.++|+..||+.+-..-+..+.....+.++.++|||+..
T Consensus        29 ~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          29 YPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             SCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCC
T ss_conf             710897845147987442888769999999998357089888

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.90  E-value=0.27  Score=23.34  Aligned_cols=61  Identities=10%  Similarity=0.232  Sum_probs=53.5

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCC
Q ss_conf             258999369989599999999880788763899998189984039971848899999741897
Q 003638           71 DAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDS  133 (806)
Q Consensus        71 ~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~~  133 (806)
                      =|-.|.++++.+|+.|..+|+++|..-....+|.|. |.+...+++++ |++++.+.....++
T Consensus        14 fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~-~~~~~e~v~ls-ee~me~aWs~v~~~   74 (82)
T d1oeya_          14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR-PRDSNELVPLS-EDSMKDAWGQVKNY   74 (82)
T ss_dssp             SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC-CTTCSSCEECC-TTTHHHHHTTCBTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCHHHEEEEEC-CCCCCCEECCC-HHHHHHHHHHCCCC
T ss_conf             999998069998799999999884798336499851-47788454255-67899999852398

>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 3, MEKK 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.35  Score=22.51  Aligned_cols=70  Identities=21%  Similarity=0.461  Sum_probs=55.6

Q ss_pred             EEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCC---CEEEEEEE
Q ss_conf             897269258999369989599999999880788763899998189984039971848899999741897---73999997
Q 003638           65 LSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDS---ATTDVFVI  141 (806)
Q Consensus        65 ~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~~---~~v~iyv~  141 (806)
                      .+|. |+.++|.+.|-+.|.|+..|+-..||   .++.+.|.   ++-.+|||.+-+||.+-++-.+.+   .+..|.+.
T Consensus         7 fE~~-gEkRIi~f~RPv~~~dl~~kv~~afG---q~ldl~y~---n~El~IPl~~Q~DLDkAvellDrs~~~ksLrilL~   79 (80)
T d2c60a1           7 FEHN-GERRIIAFSRPVKYEDVEHKVTTVFG---QPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILLL   79 (80)
T ss_dssp             EEET-TEEEEEEECSSCCHHHHHHHHHHHHS---SCCEEEEE---CSSCEEECCSHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred             EEEC-CCEEEEECCCCCCHHHHHHHHHHHHC---CEEEEEEE---CCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             8863-70689952788429999999999859---83646775---67178852567778999998716966330699973

>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 2, MEKK 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.41  Score=22.10  Aligned_cols=71  Identities=15%  Similarity=0.448  Sum_probs=57.0

Q ss_pred             EEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCC---CEEEEEEE
Q ss_conf             897269258999369989599999999880788763899998189984039971848899999741897---73999997
Q 003638           65 LSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDS---ATTDVFVI  141 (806)
Q Consensus        65 ~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~~---~~v~iyv~  141 (806)
                      .+|. |+.++|.+.|-+.|.|+..|+-..||   .++.+.|.   ++-.+||+.+-+||.+-++-.+.+   .+..|.+.
T Consensus         7 fE~~-gEkRIi~f~RPv~~~dl~~kv~~afG---q~ldl~y~---n~EL~IPl~~Q~DLDkAvellDrs~~~ksLrilL~   79 (82)
T d2nptb1           7 FEHR-GEKRILQFPRPVKLEDLRSKAKIAFG---QSMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLV   79 (82)
T ss_dssp             EEET-TEEEEEEECSSCCHHHHHHHHHHHHT---SCEEEEEE---ETTEEEECCCHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred             EEEC-CCEEEEECCCCCCHHHHHHHHHHHHC---CEEEEEEE---CCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             8863-70689952788438999999999859---84668885---67688862567778999998716966342689999


Q ss_pred             E
Q ss_conf             6
Q 003638          142 L  142 (806)
Q Consensus       142 ~  142 (806)
                      .
T Consensus        80 ~   80 (82)
T d2nptb1          80 I   80 (82)
T ss_dssp             E
T ss_pred             E
T ss_conf             5