Citrus Sinensis ID: 003668

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800----
Protein Sequence
MPIFQIFPPTHSIFAESCNHDAGDLVIGIWSVKAPNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASPEELYSESELSGSGTEEATDDDESYEDDDQDGATPESDAYTDDDLDNASSRSCSESGESGDSVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAELLVDVSSGTSSEFKLNCQSPKSCLEKSSPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQLHQTSTKLYALDYFYFFFYHCIFLC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEcccccccccccccccccccccccccccccEEccccEEEEEEccccccccEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEcccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEccccccccccEEEEEEccEEEEEEcccccccccccccccccccEEcccccEEEEcccccccEEEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHccccccHcccccHHHHHHcccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccccEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHEHHHEEEHHEcc
Coil and Loop (DISEMBL)
mpifqifppthsifaescnhdagdlVIGIWsvkapnglrrknlsgdagtppmatnppggppsgqppgpppgpndhritragnavfksgplfisskgigwtswkKRWFILTHTSlvffrsdpsaipqkgsevnltlggidlnnsgsvvvKADKKLLTVlfpdgrdgraftlkaESLEDLYDWKTALENALAqapstgsatgqngilkndkaeaangsveqlkekpvkfpvigrpillaledvdgtpSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFeqgktefspeedaHIIADCVKYVIrelpsspvpasCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASsknqnrmsTSAVAACMAPlllrpllageceietdfnvggdgSAQLLQAAAAANHAQAIVITLLEEYDKifgegsaspeelyseselsgsgteeatdddesyedddqdgatpesdaytdddldnassrscsesgesgdsvvykdkkniAPFLYYVLKMQDvgvgsksperndnseinqnpsstshekalpqnedvkdskniqnqsennssrqvnESAELLVDvssgtssefklncqspkscleksspvsnesvygskrptvwgrtaarknlsmesidgpsdneVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEaglgefngsfpipdtidekTKVELGEIAQAETDIINLKQKAKDLRVQLSEQlekndgfvgdssnqlhqTSTKLYALDYFYFFFYHCIFLC
Flexible Loop (DISEMBL)
MPIFQIFPPTHSIFAESCNHDAGDLVIGIWSVKAPNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTvlfpdgrdgraftLKAESLEDLYDWKTALENALAqapstgsatgqngILKNDKAEAANGsveqlkekpvkfpvIGRPILLALEDVDGTPSFLEKAIRFIEehgvqvegilRQAAYVDDVHRRIREFeqgktefspeedaHIIADCVKYVIRELPSSPVPASCCNALLearrtdrgsrVSAMRtailetfpepnRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGegsaspeelyseselsgsgteeatdddesyedddqdgatpesdaytdddldnassrscsesgesgdsvvykDKKNIAPFLYYVLKMQDVGVGSKSPERNDNseinqnpsstshekalpqnedVKDSKNIQNQsennssrqvneSAELLVDVSSGTSSEFKlncqspkscleksspvsnesvygskrptvwgrtaarknlsmesidgpsdnevEIQRLEdtksdlqrkiadevkgneileaSLESRKKALHERRlalendvarlkdqlqKERDKRTameaglgefngsfpipdTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEkndgfvgdssnqlHQTSTKLYALDYFYFFFYHCIFLC
Low Complexity Region (SEG)
MPIFQIFPPTHSIFAESCNHDAGDLVIGIWSVKAPNGLRRKNLSGDagtppmatnppggppsgqppgpppgpNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSaqllqaaaaanhaqaIVITLLEEYDKIFGEGsaspeelyseselsgsgteeatdddesyedddqdGATPESDAYTDDDLDNAssrscsesgesgdsVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAELLVDVSSGTSSEFKLNCQSPKSCLEKSSPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQLHQTSTKLYALDyfyfffyHCIFLC
Disordered region (IsUnstruct)
**IFQIFPPTHSIFAESCNHDAGDLVIGIWSVKA**********************************************GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI***GSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA************************************VKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG*******EDAHIIADCVKYVIRELPSSPVPASCCNALLEA************RTAILETFP**NRKLLQRILMMM***************AVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG*******************************************************************VVYKDKKNIAPFLYYVLKMQDV******************************************************************************************************************************************************************************************************************VELGEIAQAETDIINL*******************************TSTKLYALDYFYFFFYHCIFL*
Disordered Region (DISOPRED)
*PIFQ*FPPTHS***********DLVI**************************************************************L***S*****TSWKKRWFILTHTSLVFF*********************DLNN*****************PDGRDGRAFTL************************************************************GRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRG*RVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLL*****************AQLLQAAAAANHAQAIVITLLEEYDKI******************************************************************************************************************************************************************************************************************************************************************************************************************IAQAETDIIN*****************************************YFYFFFYHCIFLC
Disordered Region (DISEMBL)
MPIFQIFPPTHSIFAESCNHDAGDLVIGIWSVKAPNGLRRKNLSGDAGTPPMATNP**************GPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA*********GQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEAR********SAMRTAILETFPEPNRKLLQRILMMMQTV***********SAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGS***************************************DAYTD*******************SVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERNDNSEI***************************************SAELLVD********************************GSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQLHQTSTKLYALDYFYFFFYHCIFLC
Disordered Region (DISPRO)
MPIFQIFPPTHSIFAESCNHDAGDLVIGIWSVKAP**********************************************NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPS********VNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGS****N***********NGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE***************************************************************************************************************************************************************************************************************DNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGL*****************KVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKN************QTSTKLYALDYFYFFFYHCIFLC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPIFQIFPPTHSIFAESCNHDAGDLVIGIWSVKAPNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASPEELYSESELSGSGTEEATDDDESYEDDDQDGATPESDAYTDDDLDNASSRSCSESGESGDSVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAELLVDVSSGTSSEFKLNCQSPKSCLEKSSPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVExxxxxxxxxxxxxxxxxxxxxNEILxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLGEFNGSFPIPDTIDEKTKVELGExxxxxxxxxxxxxxxxxxxxxxxxxxxxNDGFVGDSSNQLHQTSTKLYALDYFYFFFYHCIFLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	804	2.2.26 [Sep-21-2011]
Q5ZMM3	475	Rho GTPase-activating pro	yes	no	0.251	0.425	0.277	4e-15
Q8IWW6	846	Rho GTPase-activating pro	yes	no	0.356	0.339	0.234	1e-13
Q9BE31	847	Rho GTPase-activating pro	N/A	no	0.356	0.338	0.234	4e-13
Q8C0D4	838	Rho GTPase-activating pro	yes	no	0.356	0.342	0.225	9e-13
Q7Z5H3	698	Rho GTPase-activating pro	no	no	0.455	0.524	0.232	1e-12
Q53QZ3	475	Rho GTPase-activating pro	no	no	0.251	0.425	0.259	3e-12
Q8BL80	702	Rho GTPase-activating pro	no	no	0.351	0.403	0.243	6e-12
Q91YM2	1499	Rho GTPase-activating pro	no	no	0.196	0.105	0.271	3e-11
P81128	1513	Rho GTPase-activating pro	no	no	0.196	0.104	0.271	4e-11
Q8C4V1	747	Rho GTPase-activating pro	no	no	0.308	0.331	0.239	4e-11

>sp|Q5ZMM3|RHG15_CHICK Rho GTPase-activating protein 15 OS=Gallus gallus GN=ARHGAP15 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 25/227 (11%)

Query: 216 SVEQLKEK-PVKFPVIGRPILLALEDVDGT-PSFLEKAIRFIEEHGVQVEGILRQA---A 270
           S++ L+EK  +K  + G  + L  E  + T P F+ + I+ +E  G++V+GI R +   A
Sbjct: 264 SLKTLQEKGLIKDQIFGSHLHLVCEHENSTVPQFVRQCIKAVERRGLEVDGIYRVSGNLA 323

Query: 271 YVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRT-D 329
            +  +   + + E+   + S  ED H++   +K   RELP    P       +EA +  D
Sbjct: 324 TIQKLRFVVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYCFFEQFVEAIKIQD 383

Query: 330 RGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389
             +R+ A++T +++  P PN   ++ +   ++ +A+ ++ N MST ++     P LLRP 
Sbjct: 384 NATRIKAVKT-LVKKLPRPNYDTMKVLFEHLKKIAAKESVNLMSTQSLGIVFGPTLLRP- 441

Query: 390 LAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436
                E ET     G+ +  +L       +   IV  +L EY KIFG
Sbjct: 442 -----EKET-----GNMAVHML-------YQNQIVELMLSEYSKIFG 471

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.
Gallus gallus (taxid: 9031)

>sp|Q8IWW6|RHG12_HUMAN Rho GTPase-activating protein 12 OS=Homo sapiens GN=ARHGAP12 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 141/332 (42%), Gaps = 45/332 (13%)

Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160
           +W   W +L  +SL+F ++  S+    GS  +     +DL  +   +   DK     +F 
Sbjct: 485 NWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDLKGATIEMASKDKSSKKNVFE 544

Query: 161 -DGRDGRAFTLKAESLEDLYDWKTALENALA-QAPSTGSATGQN-----GILKNDKAE-- 211
              R G    +++++   + DW   L + +  QA  T     +      GI K+DK +  
Sbjct: 545 LKTRQGTELLIQSDNDTVINDWFKVLSSTINNQAVETDEGIEEEIPDSPGIEKHDKEKEQ 604

Query: 212 -----------AANGSVEQ----------LKEKP----------VKFPVIGRPILLALED 240
                      ++  S EQ          L  +P          +K  V G  +    + 
Sbjct: 605 KDPKKLRSFKVSSIDSSEQKKTKKNLKKFLTRRPTLQAVREKGYIKDQVFGSNLANLCQR 664

Query: 241 VDGT-PSFLEKAIRFIEEHGVQVEGILRQA---AYVDDVHRRIREFEQGKTEFSPEEDAH 296
            +GT P F++  I  +EEHG+ ++GI R +   A +  +   +   E+     S  ED H
Sbjct: 665 ENGTVPKFVKLCIEHVEEHGLDIDGIYRVSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIH 724

Query: 297 IIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRI 356
           +I   +K   RELP      +  N  + A + +   RV+A++  I +  P+PN+  +Q +
Sbjct: 725 VITGALKMFFRELPEPLFTFNHFNDFVNAIKQEPRQRVAAVKDLIRQ-LPKPNQDTMQIL 783

Query: 357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
              ++ V  +  +NRM+  ++A    P LL+P
Sbjct: 784 FRHLRRVIENGEKNRMTYQSIAIVFGPTLLKP 815

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Homo sapiens (taxid: 9606)

>sp|Q9BE31|RHG12_MACFA Rho GTPase-activating protein 12 OS=Macaca fascicularis GN=ARHGAP12 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 141/333 (42%), Gaps = 46/333 (13%)

Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160
           +W   W +L  +SL+F ++  S+    GS  +     +DL  +   +   DK     +F 
Sbjct: 485 NWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDLKGATIEMASKDKSSKKNVFE 544

Query: 161 -DGRDGRAFTLKAESLEDLYDWKTALENALA-QAPSTGSATGQN------GILKNDKAE- 211
              R G    +++++   + DW   L + +  QA  T     +       GI K+DK + 
Sbjct: 545 LKTRQGTELLIQSDNDTVINDWFKVLSSTINNQAVDTDEGIEEEILPDSPGIEKHDKEKE 604

Query: 212 ------------AANGSVEQ----------LKEKP----------VKFPVIGRPILLALE 239
                       ++  S EQ          L  +P          +K  V G  +    +
Sbjct: 605 QKDPKKLRSFKVSSIDSSEQKKTKKNLKKFLTRRPTLQAVREKGYIKDQVFGSNLANLCQ 664

Query: 240 DVDGT-PSFLEKAIRFIEEHGVQVEGILRQA---AYVDDVHRRIREFEQGKTEFSPEEDA 295
             +GT P F++  I  +EE+G+ V+GI R +   A +  +   +   E+     S  ED 
Sbjct: 665 RENGTVPKFVKLCIEHVEEYGLDVDGIYRVSGNLAVIQKLRFAVNHDEKLDLNDSKWEDI 724

Query: 296 HIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQR 355
           H+I   +K   RELP      +  N  + A + +   RV+A++  I +  P+PN+  +Q 
Sbjct: 725 HVITGALKMFFRELPEPLFTFNHFNDFVNAIKQEPRQRVAAVKDLIRQ-LPKPNQDTMQI 783

Query: 356 ILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
           +   ++ V  +  +NRM+  ++A    P LL+P
Sbjct: 784 LFRHLKRVVENGEKNRMTYQSIAIVFGPTLLKP 816

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Macaca fascicularis (taxid: 9541)

>sp|Q8C0D4|RHG12_MOUSE Rho GTPase-activating protein 12 OS=Mus musculus GN=Arhgap12 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 139/332 (41%), Gaps = 45/332 (13%)

Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160
           +W   W +L  +SL+F ++  S+    GS  +     +DL  +   +   DK     +F 
Sbjct: 477 NWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDLKGAVIEMASKDKSSKKNVFE 536

Query: 161 -DGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQN------GILKNDKAE-- 211
              R G    +++++   + DW   L + +    +      +       G+ K+DK +  
Sbjct: 537 LKTRQGTELLIQSDNDAVINDWFKVLSSTINNQVAEADEAAEEETPDSPGVEKHDKEKDQ 596

Query: 212 -----------AANGSVEQ----------LKEKP----------VKFPVIGRPILLALED 240
                      ++  S EQ          L  +P          +K  V G  +    + 
Sbjct: 597 KELKKLRSMKGSSMDSSEQKKTKKNLKKFLTRRPTLQAVREKGYIKDQVFGSNLANLCQR 656

Query: 241 VDGT-PSFLEKAIRFIEEHGVQVEGILRQA---AYVDDVHRRIREFEQGKTEFSPEEDAH 296
            +GT P F++  I  +EEHG+ V+GI R +   A +  +   +   E+     S  ED H
Sbjct: 657 ENGTVPKFVKLCIEHVEEHGLDVDGIYRVSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIH 716

Query: 297 IIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRI 356
           +I   +K   RELP      +  N  + A + +   RV+A++  I +  P+PN+  +Q +
Sbjct: 717 VITGALKMFFRELPEPLFTFNHFNDFVNAIKQEPRQRVTAVKDLIRQ-LPKPNQDTMQIL 775

Query: 357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
              ++ V  +  +NRM+  ++A    P LL+P
Sbjct: 776 FRHLKRVIENGEKNRMTYQSIAIVFGPTLLKP 807

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Mus musculus (taxid: 10090)

>sp|Q7Z5H3|RHG22_HUMAN Rho GTPase-activating protein 22 OS=Homo sapiens GN=ARHGAP22 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 106/456 (23%), Positives = 169/456 (37%), Gaps = 90/456 (19%)

Query: 66  PGPPPGPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP 125
           PG  P P  HR+      V K+G  ++  +     +W++RWF+L    L +++      P
Sbjct: 26  PGRMPCP--HRL----GPVLKAG--WLKKQRSIMKNWQQRWFVLRGDQLFYYKDKDEIKP 77

Query: 126 QKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGR--------AFTLKAESLED 177
           Q      ++L G  +           K L  +  P G   R        A  L A S  D
Sbjct: 78  QG----FISLQGTQVTELPPGPEDPGKHLFEI-SPGGAGEREKVPANPEALLLMASSQRD 132

Query: 178 LYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLA 237
           + DW  A+   +  AP  G   GQ               +E+      K+     P L  
Sbjct: 133 MEDWVQAIRRVI-WAPLGGGIFGQR--------------LEETVHHERKY----GPRL-- 171

Query: 238 LEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAH 296
                  P  +E+ + FI E G+  EG+ R     + V      F+ G K  F    D H
Sbjct: 172 ------APLLVEQCVDFIRERGLTEEGLFRMPGQANLVRDLQDSFDCGEKPLFDSTTDVH 225

Query: 297 IIADCVKYVIRELPSSPVP-------ASCCNALLEARRTDRGSRVSAMRTAILETFPEPN 349
            +A  +K  +RELP   VP        SC   L +    D G     +   +    P+ N
Sbjct: 226 TVASLLKLYLRELPEPVVPFARYEDFLSCAQLLTK----DEGEGTLELAKQV-SNLPQAN 280

Query: 350 RKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQ 409
             LL+ I   +  V +  N N+MS   +A    P +LRP      ++E    +       
Sbjct: 281 YNLLRYICKFLDEVQAYSNVNKMSVQNLATVFGPNILRP------QVEDPVTI------- 327

Query: 410 LLQAAAAANHAQAIVITLLEEYDKIFG----EGSASPEELYSESELSGSGTEEATDDDES 465
            ++  +   H   ++  L+ ++ ++F     EG  SP      +   G G+EE T D + 
Sbjct: 328 -MEGTSLVQH---LMTVLIRKHSQLFTAPVPEGPTSPRGGLQCA--VGWGSEEVTRDSQG 381

Query: 466 YEDDDQDGATPESDAYTDDDLDNASSRSCSESGESG 501
                 +   P   A+    LD A+    S +  +G
Sbjct: 382 ------EPGGPGLPAHRTSSLDGAAVAVLSRTAPTG 411

Rho GTPase-activating protein involved in the signal transduction pathway that regulates endothelial cell capillary tube formation during angiogenesis. Acts as a GTPase activator for the RAC1 by converting it to an inactive GDP-bound state. Inhibits RAC1-dependent lamellipodia formation. May also play a role in transcription regulation via its interaction with VEZF1, by regulating activity of the endothelin-1 (EDN1) promoter.

Homo sapiens (taxid: 9606)

>sp|Q53QZ3|RHG15_HUMAN Rho GTPase-activating protein 15 OS=Homo sapiens GN=ARHGAP15 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 25/227 (11%)

Query: 216 SVEQLKEK-PVKFPVIGRPILLALEDVDGT-PSFLEKAIRFIEEHGVQVEGILRQA---A 270
           S++ L+EK  +K  + G  +    E  + T P F+++ I  +E+ G+ V+GI R +   A
Sbjct: 264 SLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLA 323

Query: 271 YVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTD 329
            +  +   + + E+   + S  ED H++   +K   RELP    P S     +EA ++ D
Sbjct: 324 TIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQD 383

Query: 330 RGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389
             +R+ A++ ++++  P PNR  ++ +   +  + +  ++N MST ++     P LLR  
Sbjct: 384 NNTRIEAVK-SLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLR-- 440

Query: 390 LAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436
                E ET     G+ +  ++       +   I   +L EY KIFG
Sbjct: 441 ----AENET-----GNMAIHMV-------YQNQIAELMLSEYSKIFG 471

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state. Has activity toward RAC1. Overexpression results in an increase in actin stress fibers and cell contraction.

Homo sapiens (taxid: 9606)

>sp|Q8BL80|RHG22_MOUSE Rho GTPase-activating protein 22 OS=Mus musculus GN=Arhgap22 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 124/349 (35%), Gaps = 66/349 (18%)

Query: 102 WKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADK----KLLTV 157
           W++RWF+L    L +++    + PQ         G I L  +    +  D     K L  
Sbjct: 60  WQQRWFVLRGDQLFYYKDKDESKPQ---------GFISLQGTQVTELLPDPEDPGKHLFE 110

Query: 158 LFPDGRDGR--------AFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDK 209
           + P G   R        A  L A S  D+ DW  A+   +  AP      GQ        
Sbjct: 111 ITPGGATEREKVPANPEALLLMASSQRDMEDWVQAIRRVI-WAPLGRGIFGQR------- 162

Query: 210 AEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQA 269
                  +E       KF     P+L            +E+ + FI E G+  EG+ R  
Sbjct: 163 -------LEDTVHHERKFGPRLAPLL------------VEQCVDFIRERGLSEEGLFRMP 203

Query: 270 AYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVKYVIRELPSSPVP-------ASCCNA 321
              + V      F+ G K  F    D H +A  +K  +RELP   +P        SC   
Sbjct: 204 GQANLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFARYEDFLSCAQL 263

Query: 322 LLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381
           L +    D G     +   +    P+ N  LL+ I   +  V +  + N+MS   +A   
Sbjct: 264 LTK----DEGEGTVELAKQV-SNLPQANYNLLRYICKFLDEVQAHSDVNKMSVQNLATVF 318

Query: 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430
            P +LRP +     I     + G    Q L       H Q    T LEE
Sbjct: 319 GPNILRPQIEDPVTI-----MEGTSLVQHLMTVLIRKHGQLFAATSLEE 362

Rho GTPase-activating protein involved in the signal transduction pathway that regulates endothelial cell capillary tube formation during angiogenesis. Acts as a GTPase activator for the RAC1 by converting it to an inactive GDP-bound state. Inhibits RAC1-dependent lamellipodia formation. May also play a role in transcription regulation via its interaction with VEZF1, by regulating activity of the endothelin-1 (EDN1) promoter.

Mus musculus (taxid: 10090)

>sp|Q91YM2|RHG35_MOUSE Rho GTPase-activating protein 35 OS=Mus musculus GN=Arhgap35 PE=1 SV=3

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 4/162 (2%)

Query: 230  IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF 289
             G P+   +      P F+E+ I +IE  G+  EGI R +    ++    R+F+Q     
Sbjct: 1247 FGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLD 1306

Query: 290  SPEED--AHIIADCVKYVIRELPSSPVPASCCNALLEARRT-DRGSRVSAMRTAILETFP 346
              E+D   + +A  +K    ELP   VP S    L+EA +  DR  ++ A++  +L+ FP
Sbjct: 1307 LAEKDFTVNTVAGAMKSFFSELPDPLVPYSMQIDLVEAHKINDREQKLHALK-EVLKKFP 1365

Query: 347  EPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
            + N ++ + ++  +  V+ +   N M++  ++ C  P L+RP
Sbjct: 1366 KENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP 1407

Represses transcription of the glucocorticoid receptor by binding to the cis-acting regulatory sequence 5'-GAGAAAAGAAACTGGAGAAACTC-3'. May participate in the regulation of retinal development and degeneration. May transduce signals from p21-ras to the nucleus, acting via the ras GTPase-activating protein (GAP). May also act as a tumor suppressor.

Mus musculus (taxid: 10090)

>sp|P81128|RHG35_RAT Rho GTPase-activating protein 35 OS=Rattus norvegicus GN=Arhgap35 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 4/162 (2%)

Query: 230  IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF 289
             G P+   +      P F+E+ I +IE  G+  EGI R +    ++    R+F+Q     
Sbjct: 1247 FGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLD 1306

Query: 290  SPEED--AHIIADCVKYVIRELPSSPVPASCCNALLEARRT-DRGSRVSAMRTAILETFP 346
              E+D   + +A  +K    ELP   VP S    L+EA +  DR  ++ A++  +L+ FP
Sbjct: 1307 LAEKDFTVNTVAGAMKSFFSELPDPLVPYSMQIDLVEAHKINDREQKLHALK-EVLKKFP 1365

Query: 347  EPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
            + N ++ + ++  +  V+ +   N M++  ++ C  P L+RP
Sbjct: 1366 KENHEVFKYVISHLNRVSHNNKVNLMTSENLSICFWPTLMRP 1407

Represses transcription of the glucocorticoid receptor by binding to the cis-acting regulatory sequence 5'-GAGAAAAGAAACTGGAGAAACTC-3'. May transduce signals from p21-ras to the nucleus, acting via the ras GTPase-activating protein (GAP). May also act as a tumor suppressor.

Rattus norvegicus (taxid: 10116)

>sp|Q8C4V1|RHG24_MOUSE Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 120/305 (39%), Gaps = 57/305 (18%)

Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADK----KLLT 156
           +W  RWF+L    L +F+ +    P         LG I L+ +  +    ++    K L 
Sbjct: 33  TWHTRWFVLKGDQLYYFKDEDETKP---------LGTIFLHGNKVIEHPCNEENPGKFLF 83

Query: 157 VLFPDGRDGR------AFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKA 210
            + P G   R      ++ L A +  D+ DW  ++   +   P  G   GQ  +    + 
Sbjct: 84  DVVPGGERDRMTANHESYLLMASTQNDMEDWVKSIRRVIW-GPFGGGIFGQK-LEDTVRY 141

Query: 211 EAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAA 270
           E   G+                   LA       P  +E+ + FI + G++ EG+ R   
Sbjct: 142 EKRYGN------------------RLA-------PMLVEQCVDFIRQRGLKEEGLFRLPG 176

Query: 271 YVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVKYVIRELPSSPVPAS------CCNALL 323
             + V      F+ G K  F    D H +A  +K  +RELP   VP +       C  LL
Sbjct: 177 QANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVVPYAKYEDFLSCATLL 236

Query: 324 EARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383
            ++  + G +   M+   +++ P  N  LL+ I   +  V S    N+MS   +A    P
Sbjct: 237 -SKEEEAGVK-ELMKQ--VKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSAQNLATVFGP 292

Query: 384 LLLRP 388
            +LRP
Sbjct: 293 NILRP 297

Rho GTPase-activating protein involved in cell polarity, cell morphology and cytoskeletal organization. Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. Controls actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity. Able to suppress RAC1 and CDC42 activity in vitro. Overexpression induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Isoform 2 is a vascular cell-specific GAP involved in modulation of angiogenesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	804
224063307	904	predicted protein [Populus trichocarpa]	0.840	0.747	0.658	0.0
224084580	857	predicted protein [Populus trichocarpa]	0.815	0.765	0.658	0.0
255545924	980	conserved hypothetical protein [Ricinus	0.856	0.703	0.644	0.0
297799548	925	predicted protein [Arabidopsis lyrata su	0.863	0.750	0.600	0.0
334186887	933	Rho GTPase activation protein (RhoGAP) w	0.868	0.748	0.600	0.0
357493921	920	Rho GTPase-activating protein [Medicago	0.894	0.781	0.535	0.0
224105983	872	predicted protein [Populus trichocarpa]	0.870	0.802	0.548	0.0
356510094	927	PREDICTED: uncharacterized protein LOC10	0.804	0.697	0.557	0.0
296083863	886	unnamed protein product [Vitis vinifera]	0.856	0.777	0.546	0.0
359479285	884	PREDICTED: uncharacterized protein LOC10	0.855	0.778	0.545	0.0

>gi|224063307|ref|XP_002301088.1| predicted protein [Populus trichocarpa] gi|222842814|gb|EEE80361.1| predicted protein [Populus trichocarpa]

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/703 (65%), Positives = 546/703 (77%), Gaps = 27/703 (3%)

Query: 80  AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
            GN +FKSGPLFISSKGIGWTSWKKRWFILT TSLVFFRS+PSAIPQKGSEVNLTLGGID
Sbjct: 26  GGNVIFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSNPSAIPQKGSEVNLTLGGID 85

Query: 140 LNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSAT 199
           LNNSGSVVV+ADKKLLTVLFPDGRDGRAFTLKAE+ EDLY WKTALENALAQAPST    
Sbjct: 86  LNNSGSVVVRADKKLLTVLFPDGRDGRAFTLKAETSEDLYGWKTALENALAQAPSTSLVM 145

Query: 200 GQNGILKNDKAEAANGSVEQLKEK-PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEH 258
           GQNGI ++D+A+ A+GS+EQLK+K PVK  VIGRPILLA+EDVDG+PSFLEKA+RFIE+H
Sbjct: 146 GQNGIFRDDQADGADGSLEQLKDKHPVKSLVIGRPILLAIEDVDGSPSFLEKALRFIEDH 205

Query: 259 GVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASC 318
           G++VEGILRQAA VDDV  RI+E+EQG TEFSP+EDAH+IADCVKY +RELPSSPVP SC
Sbjct: 206 GIKVEGILRQAADVDDVEHRIKEYEQGTTEFSPKEDAHVIADCVKYFLRELPSSPVPTSC 265

Query: 319 CNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378
           CNALLEA RTDRGSRV+AMR A+ ETFPEPNR+LLQRIL+MMQTVAS K  NRMSTSAVA
Sbjct: 266 CNALLEAWRTDRGSRVNAMRVAVCETFPEPNRRLLQRILLMMQTVASHKAVNRMSTSAVA 325

Query: 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438
           ACMAPLLLRPLLAG+CEIE++FNVGGDGS QLL+AAAAANHAQAIVITLLEEY+KIF EG
Sbjct: 326 ACMAPLLLRPLLAGDCEIESNFNVGGDGSIQLLKAAAAANHAQAIVITLLEEYEKIFSEG 385

Query: 439 SASPEELYSESELSGSGTEEATDDDESYEDDDQDGATPESDAYTDDDLDNASSRSCSESG 498
           S SP  LYS+S+  GS  EE TDDDESY DD    AT ESD YTD D DNASS +C++SG
Sbjct: 386 SMSP-GLYSDSDECGSEDEEVTDDDESYVDD----ATEESDVYTDADNDNASSGTCTQSG 440

Query: 499 ESGDSVVYKDKKNIAPFLYYVLKMQDVGVGSKSPER--NDNSEINQNPSSTSHEKALPQN 556
           +S +           P  + +    D+  G K PE   +++ ++ Q  SS   + +LP  
Sbjct: 441 DSCED---------DPSDHEMQGSDDLSSGFKYPEAEVDNDLKVEQKLSSHPVQASLPDT 491

Query: 557 EDVKDSKNIQNQSENNSSRQVNESAELLVDVSSGTSSEFKLNCQSPKSCLEKSSPVSNES 616
            D         QS  + +   ++S +L VDVS+ TS E K+   +     +K++ +SN  
Sbjct: 492 PD---------QSNYSLAMLPDKSDDLSVDVSTETSLENKIADYNASPNAKKTTTISNGL 542

Query: 617 VYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIADEVKGNEILEA 676
           V G KRPTVWGRTAA+KNLSMESID P + +VEIQ+LE TK ++Q  I++EVKGN IL+A
Sbjct: 543 VRG-KRPTVWGRTAAKKNLSMESIDYPIEEDVEIQKLEATKIEMQNIISEEVKGNAILQA 601

Query: 677 SLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKV 736
           +LE + KA HE RLAL+ DVARL++QLQKER+KR  +EAGL    G   +P TIDEK K 
Sbjct: 602 NLEKQTKAFHEYRLALQQDVARLQEQLQKEREKRKFLEAGLNTSKGPLQVPVTIDEKMKA 661

Query: 737 ELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQ 779
           EL EI QAE D+ NLKQK  DL  QL++Q ++  G +    NQ
Sbjct: 662 ELEEITQAEADVANLKQKVDDLHAQLNQQCDERSGSMHGLGNQ 704

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084580|ref|XP_002307345.1| predicted protein [Populus trichocarpa] gi|222856794|gb|EEE94341.1| predicted protein [Populus trichocarpa]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/697 (65%), Positives = 537/697 (77%), Gaps = 41/697 (5%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           +FKSGPLFISSKGIGWTSWKKRWFILT TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS
Sbjct: 1   IFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 60

Query: 144 GSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNG 203
           GSVVVKA+KKLLTVLFPDGRDGRAFTLKAES EDLY+WKTALENALAQAPS     GQNG
Sbjct: 61  GSVVVKAEKKLLTVLFPDGRDGRAFTLKAESSEDLYEWKTALENALAQAPSASLVMGQNG 120

Query: 204 ILKNDKAEAANGSVEQLKEK-PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQV 262
             +ND+A+ A+GS+EQ K+K PVK  VIGRPILLALEDVDG+PSFLEKA+RFIE+HG++V
Sbjct: 121 FFQNDQADGADGSLEQSKDKQPVKSLVIGRPILLALEDVDGSPSFLEKALRFIEDHGIKV 180

Query: 263 EGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNAL 322
           EGILRQAA VDDV  RI+EF  GKTEFSP+EDAH+IADCVKY +RELPSSPVP SCCNAL
Sbjct: 181 EGILRQAADVDDVEHRIKEFGLGKTEFSPKEDAHVIADCVKYFLRELPSSPVPTSCCNAL 240

Query: 323 LEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382
           LEA RTDRGSRV+AMR AI ETFPEPNR+LLQRIL+MMQTVAS K  NRMSTSAVAACMA
Sbjct: 241 LEACRTDRGSRVNAMRVAICETFPEPNRRLLQRILLMMQTVASHKAANRMSTSAVAACMA 300

Query: 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASP 442
           PLLLRPLLAG+CEIE++FNVGGDGS QLL+AAAAANHAQAIVITLLEEY+KIF EGS SP
Sbjct: 301 PLLLRPLLAGDCEIESNFNVGGDGSIQLLKAAAAANHAQAIVITLLEEYEKIFSEGSMSP 360

Query: 443 EELYSESELSGSGTEEATDDDESYEDDDQDGATPESDAYTDDDLDNASSRSCSESGESGD 502
             LYS+S+  GS  EE TDDDESY DD    AT ESD YTD+D DNASS + ++SGESG+
Sbjct: 361 -GLYSDSDECGSEDEEVTDDDESYVDD----ATEESDVYTDEDHDNASSGTSTQSGESGE 415

Query: 503 SVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVKDS 562
                      P  Y                     E++  P  TS      Q+++V+  
Sbjct: 416 D---------DPSDY---------------------ELSSCPVQTSSH----QHDNVEKR 441

Query: 563 KNIQNQSENNSSRQVNESAELLVDVSSGTSSEFKLNCQSPKSCLEKSSPVSNESVYGSKR 622
           ++I +QS N+ + Q N+S +L VDVS+ TS + K          +K S +SNE V G KR
Sbjct: 442 EDIPDQSNNSLTMQSNKSDDLSVDVSTETSLKNKTADHKASPDAKKPSTISNEPVRG-KR 500

Query: 623 PTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRK 682
           PTVWGRT+A+KNLSMESID P +++VEIQ+LE +K +LQ +I++E+KGN IL+A L+ RK
Sbjct: 501 PTVWGRTSAKKNLSMESIDYPIEDDVEIQKLEASKIELQNRISEEIKGNAILQAKLKKRK 560

Query: 683 KALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIA 742
           KALH+ R AL+ DVARL++QLQKERDKR  +EA L    G   +P TIDE  K  L EI 
Sbjct: 561 KALHDHRQALQQDVARLQEQLQKERDKRKVLEADLNTSRGPLQVPVTIDENIKAGLEEIT 620

Query: 743 QAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQ 779
           QA+ ++ NLK K  DL  QL++Q E++ G +    NQ
Sbjct: 621 QADANVANLKWKVNDLGAQLNQQHEQHSGSMHGLINQ 657

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545924|ref|XP_002514022.1| conserved hypothetical protein [Ricinus communis] gi|223547108|gb|EEF48605.1| conserved hypothetical protein [Ricinus communis]

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/725 (64%), Positives = 548/725 (75%), Gaps = 36/725 (4%)

Query: 74  DHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNL 133
           D+  +RAGN+VFKSGPLFISSKGIGWTSWKKRWFILT TSLVFFRSDPSA+PQKGSEVNL
Sbjct: 38  DNAASRAGNSVFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSAVPQKGSEVNL 97

Query: 134 TLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAP 193
           TLGGIDLNNSGSVVVK+DKKLLTVLFPDGRDGRAFTLKAE++EDLYDWKTALENALAQAP
Sbjct: 98  TLGGIDLNNSGSVVVKSDKKLLTVLFPDGRDGRAFTLKAETMEDLYDWKTALENALAQAP 157

Query: 194 STGSATGQNGILKNDKAEAANGSVEQ----LKEK-PVKFPVIGRPILLALEDVDGTPSFL 248
           S     GQNGI KND  +   GS +Q    +K+K P K  VIGRP+LLALEDVDGTPSFL
Sbjct: 158 SAALVMGQNGIFKNDPTDCVEGSFDQCVLPVKDKVPGKAMVIGRPVLLALEDVDGTPSFL 217

Query: 249 EKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRE 308
           EKA+R+IEEHGV+VEGILRQAA VDDV  RIRE+EQG+TEFS  EDAH+IADCVKY +RE
Sbjct: 218 EKALRYIEEHGVKVEGILRQAAAVDDVEHRIREYEQGRTEFSAGEDAHVIADCVKYFLRE 277

Query: 309 LPSSPVPASCCNALLEARR-----TDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
           LPSSPVPASCC ALLEA R      D  +RV+AMR AILETFPEPNR+LLQRIL+MMQ V
Sbjct: 278 LPSSPVPASCCKALLEAFRKSIGGKDHNNRVNAMREAILETFPEPNRRLLQRILLMMQNV 337

Query: 364 ASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAI 423
           AS K +NRMSTSAVAACMAPLLLRPLLAG+CEIE DF+VGGDGS QLLQAAAAANHAQAI
Sbjct: 338 ASHKAENRMSTSAVAACMAPLLLRPLLAGDCEIENDFDVGGDGSMQLLQAAAAANHAQAI 397

Query: 424 VITLLEEYDKIFGEGSASPEELYSESELSGSGTEEATDDDESYEDDDQDGATPESDAYTD 483
           VITLLEEYDKIF EG  SP  LYS+SE   S  EE TDDDESYEDD+QD A+ E+DAYTD
Sbjct: 398 VITLLEEYDKIFNEGVMSP-GLYSDSEECDSEDEEVTDDDESYEDDEQDDASQETDAYTD 456

Query: 484 DDLDNASSRSCSESGESGDSVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERNDNSEINQN 543
           DDL++ SSR  +ESG+SG+  +  +K              D+   S SPE ++ SE  + 
Sbjct: 457 DDLNDTSSR--NESGDSGEEDLSDNK-----------GCDDLSSISNSPEVDNGSEAAE- 502

Query: 544 PSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAELLVDVSSGTSSEFKLNCQSPK 603
             S S + +LP   +V   +N   +S  N +    ES ELL D+SS T+ E K     P 
Sbjct: 503 -LSNSVQTSLPSYREVDRGENSLGESNKNLTTLTAESDELLGDLSSKTTLENK-QTGDPS 560

Query: 604 SCLEKSSPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRK 663
            C+++SS +SN        P+  GRT+ RKNLSMES+D   D+E+EIQ+LE TK DLQ +
Sbjct: 561 VCIKRSSSMSNGRAPDINFPSSCGRTSGRKNLSMESLDYHFDDEIEIQKLEATKIDLQHR 620

Query: 664 IAD---------EVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAME 714
           I           +VKGN +L+A+LE RKKAL+ERRLALE DVARL+++LQKERDKR  +E
Sbjct: 621 IXXSDSSLYFSMQVKGNAVLQANLEQRKKALNERRLALEQDVARLQEELQKERDKRMVLE 680

Query: 715 AGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVG 774
           AGL     +  +P  IDEK K +L EI+QAE D+ NLKQK  +L +QL++Q ++N G   
Sbjct: 681 AGLNNSQANQSVPVIIDEKIKEDLEEISQAEADVNNLKQKVDNLSMQLNQQRDQNYGSPH 740

Query: 775 DSSNQ 779
           DS+NQ
Sbjct: 741 DSNNQ 745

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799548|ref|XP_002867658.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313494|gb|EFH43917.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/736 (60%), Positives = 536/736 (72%), Gaps = 42/736 (5%)

Query: 61  PSGQPPGPPP---GPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFF 117
           P G     PP   G  D R +RAGN VFKSGPL ISSKGIGWTSWKKRWFILT TSLVFF
Sbjct: 37  PHGDTCSIPPAQSGNTDSR-SRAGNTVFKSGPLSISSKGIGWTSWKKRWFILTRTSLVFF 95

Query: 118 RSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLED 177
           RSDPSA+ QKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKA+++ED
Sbjct: 96  RSDPSAVQQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKADTMED 155

Query: 178 LYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLA 237
           L++WK ALENAL QAPS     GQNGI +ND A+ A G  E+  E P K  V+GRP+LLA
Sbjct: 156 LHEWKAALENALTQAPSASHVMGQNGIFRNDHADPAVGVDEKKDETPTKSTVLGRPVLLA 215

Query: 238 LEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHI 297
           LEDVDG PSFLEKA+RF+E HGV++EGILRQAA VDDV  RIRE+E+GK EFSPEEDAH+
Sbjct: 216 LEDVDGAPSFLEKALRFVENHGVRIEGILRQAADVDDVEHRIREYEKGKNEFSPEEDAHV 275

Query: 298 IADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRIL 357
           IADC+KY +RELPSSPVPASCCNALLEA RTDRG+RV+AMR AI E+FPEPNR+LLQRIL
Sbjct: 276 IADCLKYFLRELPSSPVPASCCNALLEACRTDRGNRVNAMRAAICESFPEPNRRLLQRIL 335

Query: 358 MMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAA 417
           MMMQTVAS+K  NRM+T+AVAACMAPLLLRPLLAG+CEIE DF+VGGDGS QLLQAAAAA
Sbjct: 336 MMMQTVASNKTVNRMNTNAVAACMAPLLLRPLLAGDCEIENDFDVGGDGSMQLLQAAAAA 395

Query: 418 NHAQAIVITLLEEYDKIFGEGSASPEELYSESELSGSGTEEATDDDESYEDDDQDGATPE 477
           NHAQAIVITLLEEY+ IFGEGS SP  LYS+SE SGSGTEE +DD+E  +D+D    T  
Sbjct: 396 NHAQAIVITLLEEYESIFGEGSLSP-GLYSDSEESGSGTEEGSDDEEYDDDEDD--GTQG 452

Query: 478 SDAYTD--DDLDNASSRSCSESGESGDSVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERN 535
           SD YTD  +DL+N S+ S SES  S D   Y D  +I P  +          GSK P++ 
Sbjct: 453 SDDYTDEEEDLENESNGSYSESAASEDK--YAD--SIDPDDHKARPEPKSPKGSKEPKKL 508

Query: 536 DNSEINQNPSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAEL-LVDVSSGTSSE 594
                     S S   +LP+++D K  ++I  +  +N+  +V +  E+   +    ++S+
Sbjct: 509 ---------LSGSRLSSLPRHDDGKKDEDIVVKGADNT--EVKDVVEVSTTEDKDSSTSD 557

Query: 595 FKLNCQSPKSCLEKSSPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPS---DNEVEIQ 651
              + Q P           +++  GSKR   WGRT  +KNLSMESID  +   ++  +I+
Sbjct: 558 VASDTQKPSKL--------SDAPGGSKRH--WGRTPGKKNLSMESIDFSAEVDEDNADIE 607

Query: 652 RLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRT 711
           RLE TK +LQ +I +EVK N +L+ASLE RKKAL+ RR ALE DV RL++QLQ+ERD++ 
Sbjct: 608 RLESTKLELQNRITEEVKSNAVLQASLERRKKALYGRRQALEQDVGRLQEQLQQERDRKL 667

Query: 712 AMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDG 771
           A+E GL    G+ PIP+TIDE  K +L ++AQAE DI NL+ K  DL  +L +    +DG
Sbjct: 668 ALETGLNMSKGNQPIPETIDENLKKDLQDVAQAEADIANLEHKVDDLENRLGQ----HDG 723

Query: 772 FVGDSSNQLHQTSTKL 787
               S++   + S K+
Sbjct: 724 KASGSTHGASKDSRKM 739

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186887|ref|NP_194189.6| Rho GTPase activation protein (RhoGAP) with PH domain [Arabidopsis thaliana] gi|332659528|gb|AEE84928.1| Rho GTPase activation protein (RhoGAP) with PH domain [Arabidopsis thaliana]

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/748 (60%), Positives = 539/748 (72%), Gaps = 50/748 (6%)

Query: 61  PSGQPPGPPP---GPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFF 117
           P G     PP   G  D R +R GN VFKSGPL ISSKGIGWTSWKKRWFILT TSLVFF
Sbjct: 36  PHGDTCSIPPAQSGNTDSR-SRGGNTVFKSGPLSISSKGIGWTSWKKRWFILTRTSLVFF 94

Query: 118 RSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLED 177
           RSDPSA+ QKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKA+++ED
Sbjct: 95  RSDPSAVQQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKADTMED 154

Query: 178 LYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLA 237
           L++WK ALENAL QAPS     GQNGI +ND A+ A G  E+  E P K  V+GRP+LLA
Sbjct: 155 LHEWKAALENALTQAPSASHVMGQNGIFRNDHADPAVGVDEKKDETPTKSTVLGRPVLLA 214

Query: 238 LEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHI 297
           LEDVDG PSFLEKA+RF+E HGV++EGILRQAA VDDV  RIRE+E+GK EFSPEEDAHI
Sbjct: 215 LEDVDGAPSFLEKALRFVENHGVRIEGILRQAADVDDVEHRIREYEKGKNEFSPEEDAHI 274

Query: 298 IADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRIL 357
           IADC+KY +RELPSSPVPASCCNALLEA RTDRG+RV+AMR AI E+FPEPNR+LLQRIL
Sbjct: 275 IADCLKYFLRELPSSPVPASCCNALLEACRTDRGNRVNAMRAAICESFPEPNRRLLQRIL 334

Query: 358 MMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAA 417
           MMMQTVAS+K  NRM+T+AVAACMAPLLLRPLLAG+CEIE DF+VGGDGS QLLQAAAAA
Sbjct: 335 MMMQTVASNKTVNRMNTNAVAACMAPLLLRPLLAGDCEIENDFDVGGDGSMQLLQAAAAA 394

Query: 418 NHAQAIVITLLEEYDKIFG-------------EGSASPEELYSESELSGSGTEEATDDDE 464
           NHAQAIVITLLEEY+ IFG             EGS SP  LYS+SE SGSGTEE +DD+E
Sbjct: 395 NHAQAIVITLLEEYESIFGTLTSSIINGLCLQEGSLSP-GLYSDSEESGSGTEEGSDDEE 453

Query: 465 SYEDDDQDGATPESDAYTD--DDLDNASSRSCSESGESGDSVVYKDKKNIAPFLYYVLKM 522
             +DDD       S+ YTD  +DL+N S+ S SES  S D   Y D  +I P  + +   
Sbjct: 454 YDDDDDGSQG---SEDYTDEEEDLENESNGSYSESAASEDK--YAD--SIDPDDHKI--N 504

Query: 523 QDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAE 582
            ++   SKSP+R   S+  +   S S   +LP+++D K  ++I  +  NN+        +
Sbjct: 505 DNLSTESKSPKR---SKEPKKLLSGSRRSSLPRHDDGKKDEDIVVKGVNNT------EVK 555

Query: 583 LLVDVSSGTSSEFKLNCQSPKSCLEKSSPVSNESVYGSKRPTVWGRTAARKNLSMESIDG 642
            +V+VS  TS +   +     S  +K S +S ++  GSKR   WGRT  +KNLSMESID 
Sbjct: 556 AVVEVS--TSEDKNSSTSDVASDTQKPSKLS-DAPGGSKRH--WGRTPGKKNLSMESIDF 610

Query: 643 P---SDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARL 699
                ++  +I+RLE TK +LQ +I +EVK N +L+ASLE RKKAL+ RR ALE DV RL
Sbjct: 611 SVEVDEDNADIERLESTKLELQSRITEEVKSNAVLQASLERRKKALYGRRQALEQDVGRL 670

Query: 700 KDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLR 759
           ++QLQ+ERD++ A+E GL    G+ PIP+TIDE  K +L E+AQAE DI  L+ K  DL 
Sbjct: 671 QEQLQQERDRKLALETGLNMSKGNQPIPETIDENLKKDLQEVAQAEADIAKLEHKVDDLE 730

Query: 760 VQLSEQLEKNDGFVGDSSNQLHQTSTKL 787
            +L      +DG    S++   + S KL
Sbjct: 731 NRLGH----HDGKASGSTHSASKESRKL 754

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493921|ref|XP_003617249.1| Rho GTPase-activating protein [Medicago truncatula] gi|355518584|gb|AET00208.1| Rho GTPase-activating protein [Medicago truncatula]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/749 (53%), Positives = 501/749 (66%), Gaps = 30/749 (4%)

Query: 36  NGLRRKNLSGDAGTPPMATNPPGGP---PSGQPPGPPPGPNDHRITRAGNAVFKSGPLFI 92
           N L  K     A   P+   P  GP    S   PG P              VFKSGPLFI
Sbjct: 26  NSLLYKKQGKAAYNTPIMVGPLPGPCVCGSFSAPGCP----------FKRKVFKSGPLFI 75

Query: 93  SSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADK 152
           SSKGIGW SWKKRWFILT TSLVFF++DPS +PQ+G EVN+TLGGIDLNNSGSVVV+ DK
Sbjct: 76  SSKGIGWKSWKKRWFILTRTSLVFFKNDPSTLPQRGGEVNMTLGGIDLNNSGSVVVREDK 135

Query: 153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEA 212
           KLLTVLFPDGRDGRAFTLKAE+ EDL++WKTALE ALAQAPS     G NGI +ND  ++
Sbjct: 136 KLLTVLFPDGRDGRAFTLKAETSEDLFEWKTALEQALAQAPSAALVMGHNGIFRNDTTDS 195

Query: 213 ANGSVEQLKEK-PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAY 271
            +GS  Q ++K PVK  V+GRPILLALED+DG PSFLEKA+RF+E+HG +VEGILRQ+A 
Sbjct: 196 IDGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKHGTKVEGILRQSAD 255

Query: 272 VDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRG 331
           V++V RR++E+EQGK EF  EEDAH++ DCVK+V+RELPSSPVPASCC ALLEA R DR 
Sbjct: 256 VEEVDRRVQEYEQGKVEFDAEEDAHVVGDCVKHVLRELPSSPVPASCCTALLEAYRIDRK 315

Query: 332 -SRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLL 390
            +R++AMR AILETFPEPNR+LLQRIL MM T+AS  N NRM+ SAVAACMAPLLLRPLL
Sbjct: 316 EARINAMRCAILETFPEPNRRLLQRILKMMHTIASHSNVNRMTASAVAACMAPLLLRPLL 375

Query: 391 AGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASPEELYSESE 450
           AGECE+E +F+V GD SAQLL AA AAN+AQAI+ TLLEEY+ +F E +     + ++S 
Sbjct: 376 AGECELEDEFDVSGDSSAQLLAAANAANNAQAIITTLLEEYENVFDEENIQRCSISADSR 435

Query: 451 LSGSGTEEATDDDE-SYEDDDQDGATPESDAYTDDDLDNASSRSCSESGESGDSVVYKDK 509
           +  SG+E++TDDD    +++    A  E+D  TDDD D   S   SES     S +Y  K
Sbjct: 436 VENSGSEDSTDDDNIDVKENGYHDAENENDQETDDDADRVHSGKLSESSGYAGSDLYDYK 495

Query: 510 KNIAPFLYYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQ---NEDVKDSKNIQ 566
           +             DVG  + +  + +NS +N  P +   E    Q   NE+V D     
Sbjct: 496 QAFGG------DDSDVGSSTSNHAQAENSNLNTVPDTHLSEDKSKQRKVNENVVDDDPPI 549

Query: 567 NQSENNSSRQVNESAELLVDVSSGTSSEFKLNCQSPKSCLEKSSPVSNESVYGSKRPTVW 626
                 S R +    E+L  +  G      +  QS  +  + +   S+ + + +KR T W
Sbjct: 550 VLPSTESYRSM---GEILSSMDPGNHLPV-IEAQS-GTGKQTTGKTSSGTSFSTKRSTFW 604

Query: 627 GRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALH 686
           GR+  RK+ S+ES+D   + E+ IQRLE  K+DLQ +IA E +GN IL+ASLE RK+ALH
Sbjct: 605 GRSNPRKSPSVESVDSSGEEELAIQRLEIAKNDLQHRIAKEARGNAILQASLERRKQALH 664

Query: 687 ERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAET 746
           ERRLALE DV+RL++QLQ ERD R A+E GL   +G       +D KTK EL EIA AE 
Sbjct: 665 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQISNSRGMDSKTKAELEEIALAEA 724

Query: 747 DIINLKQKAKDLRVQLSEQLEKNDGFVGD 775
           D+  LKQK  +L  QL++Q + + G V D
Sbjct: 725 DVARLKQKVAELHHQLNQQRQHHYGSVTD 753

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105983|ref|XP_002314002.1| predicted protein [Populus trichocarpa] gi|222850410|gb|EEE87957.1| predicted protein [Populus trichocarpa]

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/726 (54%), Positives = 499/726 (68%), Gaps = 26/726 (3%)

Query: 82  NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
           N VFKSGPLFISSKGIGW SWKKRWFILT TSLVFF++DPSA+PQ+G EVNLTLGGIDLN
Sbjct: 14  NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN 73

Query: 142 NSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQ 201
           NSGSVVV+ DKKLLTVLFPDGRDGRAFTLKAE+ EDLY+WKTALE ALAQAPS       
Sbjct: 74  NSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSPALVMRH 133

Query: 202 NGILKNDKAEAANGSVEQLKEK-PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGV 260
           NGI +ND  EA  GS  Q ++K PVK  V+GRPILLALED+DG PSFLEKA+RF+E+ G 
Sbjct: 134 NGIFRNDTNEAIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGT 193

Query: 261 QVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCN 320
           +VEGILRQAA V++V RR++E+EQGK EF P+EDAH++ DCVK+V+RELPSSPVPASCC 
Sbjct: 194 KVEGILRQAADVEEVDRRVQEYEQGKNEFEPDEDAHVVGDCVKHVLRELPSSPVPASCCT 253

Query: 321 ALLEARRTDRG-SRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379
           ALLEA + DR  +R++AMR+AI+ETFPEPNR+LLQRIL MM T++S  ++NRM+ SAVAA
Sbjct: 254 ALLEAYKIDRKEARINAMRSAIVETFPEPNRRLLQRILKMMHTISSHAHENRMNPSAVAA 313

Query: 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGS 439
           CMAPLLLRPLLAGECE+E DF+  GD SAQLL AA AAN+AQAI+ TLLEEY+ IF + +
Sbjct: 314 CMAPLLLRPLLAGECELEDDFDFNGDNSAQLLAAANAANNAQAIITTLLEEYENIFDDEN 373

Query: 440 ASPEELYSESELSGSGTEEATDDDE-SYEDDDQDGATPESDAYTDDDLDNASSRSCSESG 498
                + ++S +  SG++++TDD+    +++    A  E D  +DDD +   S   SES 
Sbjct: 374 LHRCSISADSRIENSGSDDSTDDENMDMKENGYHDAENEVDQDSDDDPERVLSGKLSESS 433

Query: 499 ESGDSVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERN----DNSEINQNPSSTSHEKALP 554
            S DS +Y          Y      D  VG  SP  N    ++S I+ +P  T    A P
Sbjct: 434 GSADSDLYD---------YKAFGGDDSDVG--SPRTNNAPAESSNISVDPVQTRDSNAQP 482

Query: 555 QNEDVKDSK---NIQNQSENNSSRQVNESAELLVDVSSGTSSEFKLNCQSPKSCLEKSSP 611
             +  K  K   N  N+ + +S     ES   + ++ S       +     +S  EKS+ 
Sbjct: 483 IEQKSKPKKGNENSANEMDVSSVLPTGESYRSMGEILSSVDPVSPMPISGVESSAEKSAG 542

Query: 612 VSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIADEVKGN 671
               S    KR T WGR+ ARK  SMES+D   + E+ IQRLE TK+DL+ +IA E +GN
Sbjct: 543 KVAASNLNGKRSTFWGRSNARKTPSMESVDSSGEEELAIQRLEITKNDLRHRIAKEARGN 602

Query: 672 EILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTID 731
            IL+ASLE RK+ALHERRLALE DVARL++QLQ ERD R A+E GL   +G F     +D
Sbjct: 603 AILQASLERRKQALHERRLALEQDVARLQEQLQAERDLRAALEVGLSMSSGQFSSSHGMD 662

Query: 732 EKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSN-----QLHQTSTK 786
            KT+ EL EIA AE D+  LKQK  +L  QL++Q + + G + D+S+     Q H    +
Sbjct: 663 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDASDCFQHVQNHNPQQR 722

Query: 787 LYALDY 792
               D+
Sbjct: 723 FLQQDF 728

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510094|ref|XP_003523775.1| PREDICTED: uncharacterized protein LOC100796201 [Glycine max]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/734 (55%), Positives = 501/734 (68%), Gaps = 87/734 (11%)

Query: 65  PPGPPPGPNDHRITR---AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDP 121
           PP    GP +  +     +GN +FKSGPLFISSKGIGWTSWKKRWFILT TSLVFFRSDP
Sbjct: 47  PPNSQSGPQEQNLRSQGGSGNMIFKSGPLFISSKGIGWTSWKKRWFILTQTSLVFFRSDP 106

Query: 122 SAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDW 181
           +A+ QKG+EVNLTLGGIDLNNSGSVV+KADKKLLTV FPD  DGRAFTLKAE+ EDLY+W
Sbjct: 107 NAVSQKGNEVNLTLGGIDLNNSGSVVIKADKKLLTVQFPDVHDGRAFTLKAETTEDLYEW 166

Query: 182 KTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEK-PVKFPVIGRPILLALED 240
           KTALENALA APS  + T QNGI +ND+ ++ + S++QLK++ PVK  V+GRPILLALED
Sbjct: 167 KTALENALALAPSAANVTEQNGIFRNDQTDSIDISLDQLKDREPVKSTVVGRPILLALED 226

Query: 241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIAD 300
           VDGTPSFLEKA+ FIEEHG  +EGILRQAA VD+V RR+RE+EQGK EFSP+EDAH++ D
Sbjct: 227 VDGTPSFLEKALTFIEEHGANIEGILRQAADVDEVERRVREYEQGKVEFSPDEDAHVVGD 286

Query: 301 CVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMM 360
           CVK+VIRELPSSPVPASCC ALLEA RT+RGSRV++MR AI +TFPEPNR+LLQRILMMM
Sbjct: 287 CVKHVIRELPSSPVPASCCKALLEACRTERGSRVASMRAAINDTFPEPNRRLLQRILMMM 346

Query: 361 QTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHA 420
           QTVAS K  NRMS+SAVAACMAPLLLRPLLAGECEIE DF+VGGDGS QLLQAAAAANHA
Sbjct: 347 QTVASRKAVNRMSSSAVAACMAPLLLRPLLAGECEIENDFDVGGDGSVQLLQAAAAANHA 406

Query: 421 QAIVITLLEEYDKIFGEGSASPEELYSESELSGSGTEEATDD----------DESYEDDD 470
           QAI ITLLEEY  IFGEGS +P+      E SGS +EEATDD          D   +D+D
Sbjct: 407 QAICITLLEEYSSIFGEGSVTPDIYTDSEEESGSESEEATDDDDDDDDFGTGDSEADDED 466

Query: 471 QDGATPESDAYTDDDLDNASSRSCSESGESGDSVVYKDKKNIAPFLYYVLKMQDVGVGSK 530
            D A+  S +    +   AS +  S+S E                               
Sbjct: 467 HDHASSSSKSSGKSEKLKASRKLSSKSLEG------------------------------ 496

Query: 531 SPERNDNSEINQNPSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAELLVDVSSG 590
                         S T HE       D+K  +++ +  +     Q  +  +++  VS+ 
Sbjct: 497 --------------SLTQHE-------DIKSLEHVPSPKKTGYIDQSYKPDDIVGGVSTD 535

Query: 591 TSSEFKLNCQSPKSCLEKSSPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEI 650
            ++    N  SP SC++KS+ +SN      +  T+ GRT+ARKNLSMESID P ++E EI
Sbjct: 536 EATLHNSNSPSPASCIKKSNTMSNGP--APRHRTILGRTSARKNLSMESIDFPIEDEDEI 593

Query: 651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKR 710
           +RLE  +++LQ +I  EVK NE L++ ++ +KKAL ER LALE DVARL++QL KE++ R
Sbjct: 594 ERLEAARTELQTQIDKEVKANEQLQSHVDKQKKALEERHLALEQDVARLQEQLHKEKNSR 653

Query: 711 TAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKND 770
            A+E                    K EL E+A  E D+ NL+ K  ++ V+L+E LE+N 
Sbjct: 654 VALE-------------------NKAELEELALVEADLANLEWKVDEIGVRLNE-LEQNY 693

Query: 771 GFVGDSSNQLHQTS 784
           G   DSS QL Q S
Sbjct: 694 GTTSDSSIQLRQIS 707

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083863|emb|CBI24251.3| unnamed protein product [Vitis vinifera]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/732 (54%), Positives = 497/732 (67%), Gaps = 43/732 (5%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           VFKSGPLFISSKGIGW SWKKRWFILT TSLVFF+SDP+A+PQ+G EVNLTLGGIDLNNS
Sbjct: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKSDPNALPQRGGEVNLTLGGIDLNNS 78

Query: 144 GSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNG 203
           GSVVV+ DKKLLTVLFPDGRDGRAFTLKAES EDLY WKTALE ALAQAPS     G NG
Sbjct: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAESSEDLYGWKTALEQALAQAPSAALVMGHNG 138

Query: 204 ILKNDKAEAANGSVEQLKEK-PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQV 262
           I +ND ++   GS  Q ++K  VK  V+GRPILLALED+DG PSFLEKA+RF+E+ G++V
Sbjct: 139 IFRNDTSDTMEGSFCQWRDKRTVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGIKV 198

Query: 263 EGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNAL 322
           EGILRQ+A V++V RR++E+EQGKTEF  +EDAH++ DCVK+V+RELPSSPVPASCC AL
Sbjct: 199 EGILRQSADVEEVDRRVQEYEQGKTEFGADEDAHVVGDCVKHVLRELPSSPVPASCCTAL 258

Query: 323 LEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381
           LEA + DR  +RVSAMR+AILETFPEPNR+LLQRIL MM  ++S  ++NRM+  AVAACM
Sbjct: 259 LEAYKIDRKDARVSAMRSAILETFPEPNRRLLQRILKMMHAISSHASENRMTPPAVAACM 318

Query: 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSAS 441
           APLLLRPLLAGECE+E DF++ GD SAQLL AA AAN+AQAI+ TLLEEY+ IF + +  
Sbjct: 319 APLLLRPLLAGECELEDDFDMNGDSSAQLLAAANAANNAQAIITTLLEEYENIFDDDNLH 378

Query: 442 PEELYSESELSGSGTEEATDDDE-SYEDDDQDGATPESDAYTDDDLDNASSRSCSESGES 500
              + ++S +  SG+E++TDD+     D+    A  E D  T+DD +   S   SES   
Sbjct: 379 RCSISADSRIENSGSEDSTDDENIDMRDNGYHDAENEVDPDTEDDPERVHSGKLSESSGY 438

Query: 501 GDSVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVK 560
             S +Y          Y    + D  VG  SP  N  SE+N N         L  ++ V+
Sbjct: 439 AGSDLYD---------YKAFGVDDSDVG--SPTDNRASEVNSN---------LLDSQPVR 478

Query: 561 DS--KNIQNQSENN--SSRQVNE--SAELLVDVSSGTSSEFKLNCQSP---------KSC 605
           DS  + I+ Q + N  S   +NE  S  +L  V S  S    L    P         +S 
Sbjct: 479 DSNIQIIEQQDKQNKGSESPINEMDSPSILPAVESQRSMGEILASMDPGLPLPVSGLESS 538

Query: 606 LEKSSPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIA 665
            EK+      S    KR T WGR+ ARK  S ES+D   + E+ IQRLE TK+DL+ +IA
Sbjct: 539 AEKAVGKLTSSNPNGKRSTFWGRSTARKTPSTESVDSSGEEELAIQRLEITKNDLRHRIA 598

Query: 666 DEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP 725
            E +GN IL+ASLE RK+ALHERRLALE DV+RL++QLQ ERD R A+E GL   +G F 
Sbjct: 599 KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMPSGQFS 658

Query: 726 IPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSN-----QL 780
               +D KT+ EL EIA AE D+  LKQK  +L  QL++Q + + G + D+ +     Q 
Sbjct: 659 NSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQN 718

Query: 781 HQTSTKLYALDY 792
           H +  K    D+
Sbjct: 719 HSSQQKFLQQDF 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479285|ref|XP_002276277.2| PREDICTED: uncharacterized protein LOC100246624 [Vitis vinifera]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/731 (54%), Positives = 496/731 (67%), Gaps = 43/731 (5%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           VFKSGPLFISSKGIGW SWKKRWFILT TSLVFF+SDP+A+PQ+G EVNLTLGGIDLNNS
Sbjct: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKSDPNALPQRGGEVNLTLGGIDLNNS 78

Query: 144 GSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNG 203
           GSVVV+ DKKLLTVLFPDGRDGRAFTLKAES EDLY WKTALE ALAQAPS     G NG
Sbjct: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAESSEDLYGWKTALEQALAQAPSAALVMGHNG 138

Query: 204 ILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVE 263
           I +ND ++   GS  + K + VK  V+GRPILLALED+DG PSFLEKA+RF+E+ G++VE
Sbjct: 139 IFRNDTSDTMEGSFWRDK-RTVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGIKVE 197

Query: 264 GILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALL 323
           GILRQ+A V++V RR++E+EQGKTEF  +EDAH++ DCVK+V+RELPSSPVPASCC ALL
Sbjct: 198 GILRQSADVEEVDRRVQEYEQGKTEFGADEDAHVVGDCVKHVLRELPSSPVPASCCTALL 257

Query: 324 EARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382
           EA + DR  +RVSAMR+AILETFPEPNR+LLQRIL MM  ++S  ++NRM+  AVAACMA
Sbjct: 258 EAYKIDRKDARVSAMRSAILETFPEPNRRLLQRILKMMHAISSHASENRMTPPAVAACMA 317

Query: 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASP 442
           PLLLRPLLAGECE+E DF++ GD SAQLL AA AAN+AQAI+ TLLEEY+ IF + +   
Sbjct: 318 PLLLRPLLAGECELEDDFDMNGDSSAQLLAAANAANNAQAIITTLLEEYENIFDDDNLHR 377

Query: 443 EELYSESELSGSGTEEATDDDE-SYEDDDQDGATPESDAYTDDDLDNASSRSCSESGESG 501
             + ++S +  SG+E++TDD+     D+    A  E D  T+DD +   S   SES    
Sbjct: 378 CSISADSRIENSGSEDSTDDENIDMRDNGYHDAENEVDPDTEDDPERVHSGKLSESSGYA 437

Query: 502 DSVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVKD 561
            S +Y          Y    + D  VG  SP  N  SE+N N         L  ++ V+D
Sbjct: 438 GSDLYD---------YKAFGVDDSDVG--SPTDNRASEVNSN---------LLDSQPVRD 477

Query: 562 S--KNIQNQSENN--SSRQVNE--SAELLVDVSSGTSSEFKLNCQSP---------KSCL 606
           S  + I+ Q + N  S   +NE  S  +L  V S  S    L    P         +S  
Sbjct: 478 SNIQIIEQQDKQNKGSESPINEMDSPSILPAVESQRSMGEILASMDPGLPLPVSGLESSA 537

Query: 607 EKSSPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIAD 666
           EK+      S    KR T WGR+ ARK  S ES+D   + E+ IQRLE TK+DL+ +IA 
Sbjct: 538 EKAVGKLTSSNPNGKRSTFWGRSTARKTPSTESVDSSGEEELAIQRLEITKNDLRHRIAK 597

Query: 667 EVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPI 726
           E +GN IL+ASLE RK+ALHERRLALE DV+RL++QLQ ERD R A+E GL   +G F  
Sbjct: 598 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMPSGQFSN 657

Query: 727 PDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSN-----QLH 781
              +D KT+ EL EIA AE D+  LKQK  +L  QL++Q + + G + D+ +     Q H
Sbjct: 658 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNH 717

Query: 782 QTSTKLYALDY 792
            +  K    D+
Sbjct: 718 SSQQKFLQQDF 728

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	804
TAIR|locus:2150265	870	AT5G19390 [Arabidopsis thalian	0.856	0.791	0.499	2.4e-168
TAIR|locus:2176992	827	AT5G12150 [Arabidopsis thalian	0.444	0.431	0.638	4.1e-162
ZFIN|ZDB-GENE-090313-87	698	arhgap22 "Rho GTPase activatin	0.172	0.199	0.296	6.8e-17
UNIPROTKB|Q5ZMM3	475	ARHGAP15 "Rho GTPase-activatin	0.213	0.362	0.268	3.2e-14
RGD|1310017	813	Arhgap12 "Rho GTPase activatin	0.213	0.211	0.275	1.1e-13
MGI|MGI:1922665	838	Arhgap12 "Rho GTPase activatin	0.213	0.205	0.275	4.9e-13
ZFIN|ZDB-GENE-070912-314	465	arhgap15 "Rho GTPase activatin	0.248	0.430	0.258	7e-13
UNIPROTKB|Q504X1	841	ARHGAP12 "Rho GTPase-activatin	0.213	0.204	0.269	8.1e-13
UNIPROTKB|Q8IWW6	846	ARHGAP12 "Rho GTPase-activatin	0.213	0.203	0.269	8.3e-13
ZFIN|ZDB-GENE-030131-3922	970	arhgap27 "Rho GTPase activatin	0.252	0.209	0.282	8.9e-13

TAIR|locus:2150265 AT5G19390 [Arabidopsis thaliana (taxid:3702)]

 Score = 1609 (571.5 bits), Expect = 2.4e-168, Sum P(2) = 2.4e-168
 Identities = 352/705 (49%), Positives = 453/705 (64%)

Query:    80 AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
             A N VFKSGPLFISSKG+GWTSWKKRWFILT TSLVFF++DP  +PQKG EVNLTLGGID
Sbjct:    15 ASNTVFKSGPLFISSKGLGWTSWKKRWFILTRTSLVFFKNDPGTLPQKGGEVNLTLGGID 74

Query:   140 LNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSAT 199
             LNNSGSVVV+ DKKLLTVLFPDGRDGRAFTLKAE+ EDLY+WKTALE ALAQAP+     
Sbjct:    75 LNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETFEDLYEWKTALEQALAQAPNAALIM 134

Query:   200 GQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHG 259
             GQNGI +   AE  N ++E  +++P+K  V+GRPILLALED+DG+PSFLEKA++FIE++G
Sbjct:   135 GQNGIFR---AET-NEAIEGREKRPLKSLVVGRPILLALEDIDGSPSFLEKALQFIEKYG 190

Query:   260 VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCC 319
              ++EGILRQ+A V++V RR++E+EQGKTEF+ +ED H++ DC+K+V+RELPSSPV ASCC
Sbjct:   191 TKIEGILRQSADVEEVERRVQEYEQGKTEFTFDEDPHVVGDCIKHVLRELPSSPVSASCC 250

Query:   320 NALLEARRTD-RGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378
              ALLEA R + + +R+S++R+AI ETFPEPNR+LLQRIL MM T++S  ++NRM+ +AVA
Sbjct:   251 TALLEAYRIESKEARISSLRSAIAETFPEPNRRLLQRILKMMHTISSHSHENRMNPNAVA 310

Query:   379 ACMAPLLLRPLLAGECEIETDFNVGGDGSXXXXXXXXXXXXXXXIVITLLEEYDKIFGEG 438
             ACMAPLLLRPLLAGEC++E DF+ G D S               I+  LLE+Y  IF E 
Sbjct:   311 ACMAPLLLRPLLAGECDLEDDFDGGEDNSAQLLAAANAANNAQAIITVLLEDYGSIFDE- 369

Query:   439 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATPESDAYTDDDLDNAXXXXXXXXX 498
                                                A  E +  TDDD D A         
Sbjct:   370 ENIQRCSISTESHIGNSGPDDSSDDDNNMKNGYHNADNEVEPVTDDDNDRALSGKMSESS 429

Query:   499 XXXXXVVYKDKKNIAPFLYYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNED 558
                   +Y+ K  +A            G    S  R D+   N   +ST  +      +D
Sbjct:   430 GCTGSDLYEYKGFVADDSDIESPRDTNGPRCNSNIRTDHLMRNPFVNSTDQQAGEQIGDD 489

Query:   559 VKDSKNIQNQSENNSSRQVNESAE-LLVDVSSGTSSEFKLNCQSPKSCLEKSSPVSNESV 617
                +K   N    + S    +S   L V     T +   L   S KS + K +P    SV
Sbjct:   490 --PTKYGVNSCLAHVSESYQQSGTGLNVPTHGNTLAAPGLESPSAKS-VNKGTP---SSV 543

Query:   618 YGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIADEVKGNEILEAS 677
             + +KR T WGR +ARK  +  S D   ++E+ IQRLE TK++L+++IA E +GN IL+AS
Sbjct:   544 H-AKRATFWGRGSARKISTDGSFDSSGEDELAIQRLETTKNELRQRIAKEARGNAILQAS 602

Query:   678 LESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVE 737
             LE RK+ALHERRL+LE DV+RL++QLQ ERD R A+E GL   +G F     +D KT+ E
Sbjct:   603 LERRKQALHERRLSLEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SHGVDSKTRAE 661

Query:   738 LGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQLHQ 782
             L EIA AE D+  LKQK  +L  QL++Q + + G   D+ +  HQ
Sbjct:   662 LEEIALAEADVARLKQKVAELHHQLNQQRQTHFGSFSDARDT-HQ 705

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0005100 "Rho GTPase activator activity" evidence=ISS

TAIR|locus:2176992 AT5G12150 [Arabidopsis thaliana (taxid:3702)]

 Score = 1223 (435.6 bits), Expect = 4.1e-162, Sum P(2) = 4.1e-162
 Identities = 230/360 (63%), Positives = 289/360 (80%)

Query:    80 AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
             A N V+KSGPLFISSKG+GWTSWKKRWFILT TSLVFF++DPSA+PQKG EVNLTLGGID
Sbjct:    15 ASNTVYKSGPLFISSKGLGWTSWKKRWFILTRTSLVFFKNDPSALPQKGGEVNLTLGGID 74

Query:   140 LNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSAT 199
             LN+SGSVVV+ DKKLLTVLFPDGRDGRAFTLKAE+L+DLY+WK ALE ALAQAP+     
Sbjct:    75 LNSSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETLDDLYEWKAALEQALAQAPNAALVI 134

Query:   200 GQNGILKNDKAEAANGSVEQLKE-KPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEH 258
             GQNGI + +       S    ++ +P+K  V+GRPILLALE++DG+PSFLEKA++F+E +
Sbjct:   135 GQNGIFRTEANNTIEASFNSWRDQRPLKSSVVGRPILLALEEIDGSPSFLEKALQFLETY 194

Query:   259 GVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASC 318
             G +VEGILRQ+A V++V RR++E+EQGKTEFSPEED H++ DCVK+V+R+LPSSPVPASC
Sbjct:   195 GTKVEGILRQSADVEEVERRVQEYEQGKTEFSPEEDPHVVGDCVKHVLRQLPSSPVPASC 254

Query:   319 CNALLEARRTDRG-SRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAV 377
             C ALLEA + D+  +RV+++R+AI+ETFPEPNR+LL R+L MM T+ S  ++NRM++SAV
Sbjct:   255 CTALLEAYKIDQNEARVNSLRSAIIETFPEPNRRLLLRMLKMMHTITSHSSENRMTSSAV 314

Query:   378 AACMAPLLLRPLLAGECEIETDFNVGGDGSXXXXXXXXXXXXXXXIVITLLEEYDKIFGE 437
             AACM+PLLLRPLLAGEC++E  F+  GD S               IV  LLE+Y  +  +
Sbjct:   315 AACMSPLLLRPLLAGECDLE-GFDTLGDNSAQLLAAANAANNAQAIVTALLEDYGNMIND 373

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005100 "Rho GTPase activator activity" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

ZFIN|ZDB-GENE-090313-87 arhgap22 "Rho GTPase activating protein 22" [Danio rerio (taxid:7955)]

 Score = 165 (63.1 bits), Expect = 6.8e-17, Sum P(3) = 6.8e-17
 Identities = 45/152 (29%), Positives = 67/152 (44%)

Query:   245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
             P  +E+ + FI E G++ EG+ R     + V      F+ G K  F    D H +A  +K
Sbjct:   176 PLLVEQCVDFIREQGLKEEGLFRMPGQANLVKELQDAFDCGDKPLFDSNTDVHTVASLLK 235

Query:   304 YVIRELPSSPVP-------ASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRI 356
               +RELP   +P        +C   LL+      G  V  +      T P+ N  LL+ I
Sbjct:   236 LYLRELPEPVIPFNKYEDFLTCAQLLLKDEEMGLGELVKQV-----STLPQANYNLLKYI 290

Query:   357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
                +  V S  N+N+MS   +A    P +LRP
Sbjct:   291 CKFLDEVQSHSNENKMSVQNLATVFGPNILRP 322

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|Q5ZMM3 ARHGAP15 "Rho GTPase-activating protein 15" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 3.2e-14, Sum P(3) = 3.2e-14
 Identities = 48/179 (26%), Positives = 93/179 (51%)

Query:   216 SVEQLKEKP-VKFPVIGRPILLALEDVDGT-PSFLEKAIRFIEEHGVQVEGILRQAAYVD 273
             S++ L+EK  +K  + G  + L  E  + T P F+ + I+ +E  G++V+GI R +  + 
Sbjct:   264 SLKTLQEKGLIKDQIFGSHLHLVCEHENSTVPQFVRQCIKAVERRGLEVDGIYRVSGNLA 323

Query:   274 DVHRR---IREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRT-D 329
              + +    + + E+   + S  ED H++   +K   RELP    P       +EA +  D
Sbjct:   324 TIQKLRFVVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYCFFEQFVEAIKIQD 383

Query:   330 RGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
               +R+ A++T +++  P PN   ++ +   ++ +A+ ++ N MST ++     P LLRP
Sbjct:   384 NATRIKAVKT-LVKKLPRPNYDTMKVLFEHLKKIAAKESVNLMSTQSLGIVFGPTLLRP 441

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IEA

RGD|1310017 Arhgap12 "Rho GTPase activating protein 12" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 49/178 (27%), Positives = 90/178 (50%)

Query:   216 SVEQLKEKP-VKFPVIGRPILLALEDVDGT-PSFLEKAIRFIEEHGVQVEGILRQA---A 270
             +++ ++EK  +K  V G  +    +  +GT P F++  I  +EEHG+ V+GI R +   A
Sbjct:   606 TLQAVREKGYIKDQVFGSNLANLCQRENGTVPKFVKLCIEHVEEHGLDVDGIYRVSGNLA 665

Query:   271 YVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR 330
              +  +   +   E+     S  ED H+I   +K   RELP      +  N  + A + + 
Sbjct:   666 VIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNAIKQEP 725

Query:   331 GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
               RV+A++  I +  P+PN+  +Q +   ++ V  +  +NRM+  ++A    P LL+P
Sbjct:   726 RQRVTAVKDLIRQ-LPKPNQDTMQILFRHLKRVIENGEKNRMTYQSIAIVFGPTLLKP 782

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:1922665 Arhgap12 "Rho GTPase activating protein 12" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
 Identities = 49/178 (27%), Positives = 90/178 (50%)

Query:   216 SVEQLKEKP-VKFPVIGRPILLALEDVDGT-PSFLEKAIRFIEEHGVQVEGILRQA---A 270
             +++ ++EK  +K  V G  +    +  +GT P F++  I  +EEHG+ V+GI R +   A
Sbjct:   631 TLQAVREKGYIKDQVFGSNLANLCQRENGTVPKFVKLCIEHVEEHGLDVDGIYRVSGNLA 690

Query:   271 YVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR 330
              +  +   +   E+     S  ED H+I   +K   RELP      +  N  + A + + 
Sbjct:   691 VIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNAIKQEP 750

Query:   331 GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
               RV+A++  I +  P+PN+  +Q +   ++ V  +  +NRM+  ++A    P LL+P
Sbjct:   751 RQRVTAVKDLIRQ-LPKPNQDTMQILFRHLKRVIENGEKNRMTYQSIAIVFGPTLLKP 807

GO:0003674 "molecular_function" evidence=ND

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-070912-314 arhgap15 "Rho GTPase activating protein 15" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
 Identities = 55/213 (25%), Positives = 101/213 (47%)

Query:   194 STGSATGQNGILKN--DKAEAANGSVEQLKEKPV-KFPVIGRPILLALEDVDGT--PSFL 248
             S   +  +NG+ KN   K  +   S++ L+EK + K  V G   +L L D + T  P F+
Sbjct:   231 SASDSADKNGV-KNRLKKFISRRPSMKTLQEKGIIKDRVFGCH-MLTLCDREKTTVPKFV 288

Query:   249 EKAIRFIEEHGVQVEGILRQA---AYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYV 305
             +  +  +E+ G++ +GI R +   A +  +   + + E+     S  ED H+I   +K  
Sbjct:   289 KLCVEEVEKRGLEADGIYRVSGNLAIIQKLRFLVDQEEELDLGDSQWEDIHVITGALKMF 348

Query:   306 IRELPSSPVPASCCNALLEARRTDRGS-RVSAMRTAILETFPEPNRKLLQRILMMMQTVA 364
              RELP    P    +  +E  +    + +V AM+  ++   P+PN   ++ +   ++ V 
Sbjct:   349 FRELPEPLFPFRFFDLFVETIKIKEPTQKVQAMKK-LIHQLPKPNHNTMKLLFHHLRRVL 407

Query:   365 SSKNQNRMSTSAVAACMAPLLLRPLL-AGECEI 396
             +   +N MST  V+    P L+ P   +G  E+
Sbjct:   408 TKSQKNLMSTQGVSIVFGPTLMWPEFESGNMEV 440

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|Q504X1 ARHGAP12 "Rho GTPase-activating protein 12" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
 Identities = 48/178 (26%), Positives = 90/178 (50%)

Query:   216 SVEQLKEKP-VKFPVIGRPILLALEDVDGT-PSFLEKAIRFIEEHGVQVEGILRQA---A 270
             +++ ++EK  +K  V G  +    +  +GT P F++  I  +EEHG+ ++GI R +   A
Sbjct:   634 TLQAVREKGYIKDQVFGSNLANLCQRENGTVPKFVKLCIEHVEEHGLDIDGIYRVSGNLA 693

Query:   271 YVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR 330
              +  +   +   E+     S  ED H+I   +K   RELP      +  N  + A + + 
Sbjct:   694 VIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNAIKQEP 753

Query:   331 GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
               RV+A++  I +  P+PN+  +Q +   ++ V  +  +NRM+  ++A    P LL+P
Sbjct:   754 RQRVAAVKDLIRQ-LPKPNQDTMQILFRHLRRVIENGEKNRMTYQSIAIVFGPTLLKP 810

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|Q8IWW6 ARHGAP12 "Rho GTPase-activating protein 12" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
 Identities = 48/178 (26%), Positives = 90/178 (50%)

Query:   216 SVEQLKEKP-VKFPVIGRPILLALEDVDGT-PSFLEKAIRFIEEHGVQVEGILRQA---A 270
             +++ ++EK  +K  V G  +    +  +GT P F++  I  +EEHG+ ++GI R +   A
Sbjct:   639 TLQAVREKGYIKDQVFGSNLANLCQRENGTVPKFVKLCIEHVEEHGLDIDGIYRVSGNLA 698

Query:   271 YVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR 330
              +  +   +   E+     S  ED H+I   +K   RELP      +  N  + A + + 
Sbjct:   699 VIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNAIKQEP 758

Query:   331 GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
               RV+A++  I +  P+PN+  +Q +   ++ V  +  +NRM+  ++A    P LL+P
Sbjct:   759 RQRVAAVKDLIRQ-LPKPNQDTMQILFRHLRRVIENGEKNRMTYQSIAIVFGPTLLKP 815

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

ZFIN|ZDB-GENE-030131-3922 arhgap27 "Rho GTPase activating protein 27" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
 Identities = 61/216 (28%), Positives = 107/216 (49%)

Query:   182 KTALENALAQAPSTGSATG--QNGI-LKNDKAEAANGSVEQLKEKP-VKFPVIGRPIL-L 236
             K  +  A  Q PST S +   Q  +  K  K      +++ +K+K  ++  V G  +  L
Sbjct:   728 KRTMSTATRQ-PSTSSTSEAEQKKVRTKLKKFLLKRPTLQSVKDKGYIRENVFGCHLHNL 786

Query:   237 ALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEE--- 293
               ++    PSF+EK IR +E+ G++++G+ R +  +  V +++R F+    +   EE   
Sbjct:   787 CSQEKTRVPSFVEKCIRAVEKRGLEIDGLYRVSGNLA-VIQKLR-FKADHEDLDLEEGNW 844

Query:   294 DAHIIADCVKYVIRELPSSPVPASCCNALLEARRT-DRGSRVSAMRTAILETFPEPNRKL 352
             D H+I   +K   REL     P +  N  + A +T D  S++S MR  ++ + P PN   
Sbjct:   845 DIHVITGALKLFFRELQEPLFPYNLFNEFICAIKTPDYYSKISHMRN-LVRSLPPPNHDT 903

Query:   353 LQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
             ++ +   ++ V    N+NRM+   VA    P LL+P
Sbjct:   904 MEALFSHLRRVIQHGNENRMTVQNVAIVFGPTLLKP 939

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	804
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	6e-32
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	3e-29
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	3e-25
pfam14389	88	pfam14389, Lzipper-MIP1, Leucine-zipper of ternary	1e-23
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	2e-16
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	6e-16
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	9e-14
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	2e-13
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	4e-12
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	5e-12
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	1e-11
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	1e-11
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	2e-11
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	2e-11
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	2e-11
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	3e-11
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	7e-11
smart00233	102	smart00233, PH, Pleckstrin homology domain	4e-10
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	7e-10
pfam00169	101	pfam00169, PH, PH domain	2e-09
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	3e-09
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	3e-09
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	7e-09
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	8e-09
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	2e-08
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	2e-08
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	7e-08
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	1e-07
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	1e-07
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	3e-07
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	4e-07
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	8e-07
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	1e-06
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	2e-06
cd13296	111	cd13296, PH2_MyoX, Myosin X Pleckstrin homology (P	4e-06
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	4e-06
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	6e-06
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	8e-06
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	2e-05
cd13265	108	cd13265, PH_evt, Evectin Pleckstrin homology (PH)	3e-05
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	9e-05
cd13215	130	cd13215, PH-GRAM1_AGT26, Autophagy-related protein	1e-04
cd13297	123	cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin h	2e-04
cd13284	99	cd13284, PH_OSBP_ORP4, Human Oxysterol binding pro	2e-04
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	2e-04
cd13279	91	cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) d	4e-04
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	5e-04
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	5e-04
cd13326	90	cd13326, PH_CNK_insect-like, Connector enhancer of	5e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	6e-04
cd13247	125	cd13247, BAR-PH_APPL, Adaptor protein containing P	6e-04
cd13253	93	cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, anky	7e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
cd13271	114	cd13271, PH2_TAPP1_2, Tandem PH-domain-containing	0.001
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
cd01265	101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	0.004
cd04388	200	cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac	0.004

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score =  121 bits (305), Expect = 6e-32
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSP--EEDAHIIADCV 302
           P  +EK + F+E+ G+  EGI R +     +      F+ G+       EED H++A  +
Sbjct: 1   PLIVEKCVEFLEKRGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLL 60

Query: 303 KYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQ 361
           K  +RELP   +        +EA +  D   RV A+R  +L   P  NR  L+ +L  + 
Sbjct: 61  KLFLRELPEPLLTFELYEEFIEAAKSEDEEERVEALR-ELLRKLPPANRDTLRYLLAHLN 119

Query: 362 TVASSKNQNRMSTSAVAACMAPLLLRP 388
            VA +   N+M+   +A    P LLRP
Sbjct: 120 RVAQNSEVNKMNAHNLAIVFGPTLLRP 146

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score =  114 bits (287), Expect = 3e-29
 Identities = 44/155 (28%), Positives = 84/155 (54%), Gaps = 3/155 (1%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEE-DAHIIADCVK 303
           P  +EK I ++E++G+  EGI R +     +    ++F++G+     E+ D H +A  +K
Sbjct: 1   PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLK 60

Query: 304 YVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQT 362
             +RELP   +P    +  +E  +  D   R+ A++  +L++ P  NR LL+ +L ++  
Sbjct: 61  LYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKE-LLKSLPPENRDLLKYLLKLLHK 119

Query: 363 VASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIE 397
           ++ +   N+M+ S +A   AP LLRP  + +  +E
Sbjct: 120 ISQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLE 154

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score =  102 bits (257), Expect = 3e-25
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 22/190 (11%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK--TEFSPEEDAHIIADCV 302
           P  +EK I ++E+ G+  EGI R +     V      F+ G        E D H +A  +
Sbjct: 4   PIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVAGLL 63

Query: 303 KYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQ 361
           K  +RELP   +        +EA +  D   R+ A+R  +L   P  NR  L+ +L  + 
Sbjct: 64  KLFLRELPEPLITYELYEEFIEAAKLEDETERLRALR-ELLSLLPPANRATLRYLLAHLN 122

Query: 362 TVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQ 421
            VA    +N+M+   +A    P LLRP                      + +     H  
Sbjct: 123 RVAEHSEENKMTARNLAIVFGPTLLRP------------------PDGEVASLKDIRHQN 164

Query: 422 AIVITLLEEY 431
            ++  L+E  
Sbjct: 165 TVIEFLIENA 174

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|206557 pfam14389, Lzipper-MIP1, Leucine-zipper of ternary complex factor MIP1

 Score = 95.3 bits (238), Expect = 1e-23
 Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 680 SRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGS-FPIPDTIDEKTKVEL 738
            +KKA  ERR ALE +VA+L+ QLQ+E D R A+E  LG  +GS  P+P ++ +K K  L
Sbjct: 1   KKKKASQERRSALEQEVAKLQKQLQQEEDLREALEKALGRSSGSLLPLPSSLPKKAKELL 60

Query: 739 GEIAQAETDIINLKQKAKDLRVQLSEQ 765
            EIA  E ++ NL+Q+   L  QL ++
Sbjct: 61  AEIALLEAEVSNLEQQLLSLYRQLFQE 87

This leucine-zipper is towards the N-terminus of MIP1 proteins. These proteins, here largely from plants, are subunits of the TORC2 (rictor-mTOR) protein complex controlling cell growth and proliferation. The leucine-zipper is likely to be the region that interacts with plant MADS-box factors,. Length = 88

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQA---AYVDDVHRRIREFEQGKTEFSPEEDAHIIADC 301
           P F+   I  +E+ G+ V+GI R +   A +  +   +   E+   + S  ED H+I   
Sbjct: 17  PKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGA 76

Query: 302 VKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMM 360
           +K   RELP    P S  N  + A + +D   RVSA++  I    P+PN   L+ +   +
Sbjct: 77  LKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKS-LPKPNHDTLKMLFRHL 135

Query: 361 QTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIET 398
             V     +NRM+T  +A    P LLRP      E ET
Sbjct: 136 CRVIEHGEKNRMTTQNLAIVFGPTLLRP------EQET 167

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score = 76.3 bits (188), Expect = 6e-16
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 13/150 (8%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEE------DAHII 298
           P  LEK +  IE HG+  EGI R++        +I+E  QG  +  P+         H+I
Sbjct: 16  PLVLEKLLEHIEMHGLYTEGIYRKSG----SANKIKELRQG-LDTDPDSVNLEDYPIHVI 70

Query: 299 ADCVKYVIRELPSSPVPASCCNALLEARR-TDRGSRVSAMRTAILETFPEPNRKLLQRIL 357
              +K  +RELP   +        L A    ++  RV A+  ++LE  P  N   L+R++
Sbjct: 71  TSVLKQWLRELPEPLMTFELYENFLRAMELEEKQERVRAL-YSVLEQLPRANLNTLERLI 129

Query: 358 MMMQTVASSKNQNRMSTSAVAACMAPLLLR 387
             +  VA  +  NRMS +A+A   AP +LR
Sbjct: 130 FHLVRVALQEEVNRMSANALAIVFAPCILR 159

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score = 70.2 bits (172), Expect = 9e-14
 Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 10/150 (6%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILR---QAAYVDDVHRRIREFEQ-GKTEFSPEE-DAHIIA 299
           P FLEK + FIE  G++ EGI R      ++D + ++   F+Q    +   ++   + +A
Sbjct: 16  PIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQ---FDQDHNLDLVSKDFTVNAVA 72

Query: 300 DCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILM 358
             +K    ELP   +P S    L+EA +  DR  R+ A++  +L+ FP  N  + + ++ 
Sbjct: 73  GALKSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKE-LLKKFPPENFDVFKYVIT 131

Query: 359 MMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
            +  V+ +   N M++  ++ C  P L+RP
Sbjct: 132 HLNKVSQNSKVNLMTSENLSICFWPTLMRP 161

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 27/200 (13%)

Query: 240 DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHII 298
           + +  P  + + + +++ H +  EGI R++A    V    +++  G+   F   ED H+ 
Sbjct: 19  EQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLP 78

Query: 299 ADCVKYVIRELPSSPVPASCCN---ALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQR 355
           A  +K  +RELP   +     +     L   + +R  RV      +L+T PE N ++L+ 
Sbjct: 79  AVILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERV----KQLLQTLPEENYQVLKY 134

Query: 356 ILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAA 415
           ++  +  V++  +QN+M+ S +A    P LL                  D S  L    +
Sbjct: 135 LIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWA---------------KDASMSL----S 175

Query: 416 AANHAQAIVITLLEEYDKIF 435
           A N        LL+  D+IF
Sbjct: 176 AINPINTFTKFLLDHQDEIF 195

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 4/145 (2%)

Query: 242 DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIAD 300
           +G P+ +   + ++E+HG++ EG+ R     + V    +  + G+  + S E D    A 
Sbjct: 18  NGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAAS 77

Query: 301 CVKYVIRELPSSPVPASCCNALLEARRTDRGSRV--SAMRTAILETFPEPNRKLLQRILM 358
            ++  ++ELP   +PAS    L++  +   G       +R  +L+  P  N  LL+ +  
Sbjct: 78  LLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRD-LLQQLPPVNYSLLKFLCH 136

Query: 359 MMQTVASSKNQNRMSTSAVAACMAP 383
            +  VAS  ++NRM+   +AA   P
Sbjct: 137 FLSNVASQHHENRMTAENLAAVFGP 161

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 32/207 (15%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQGK-TEFSPEEDAHIIADCV 302
           P  +E   + +E+HG+Q  GI R  +    V R++RE F++G           H +A  +
Sbjct: 10  PRLVESCCQHLEKHGLQTVGIFRVGSSKKRV-RQLREEFDRGIDVVLDENHSVHDVAALL 68

Query: 303 KYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQT 362
           K   R++P   +P     A +     +   ++ A++  ++   P  N   L R+L  + T
Sbjct: 69  KEFFRDMPDPLLPRELYTAFIGTALLEPDEQLEALQL-LIYLLPPCNCDTLHRLLKFLHT 127

Query: 363 VASSKNQ-----------NRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLL 411
           VA                N+M++  +A    P LL                   G  + +
Sbjct: 128 VAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH--------------KQKSGEREFV 173

Query: 412 QAAAAANHAQAIVI---TLLEEYDKIF 435
           QA+     + AI+    T+++ Y+++F
Sbjct: 174 QASLRIEESTAIINVVQTMIDNYEELF 200

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 21/156 (13%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILR---QAAYVDDVHRRIRE-FEQG-KTEFSPEEDAHIIA 299
           P  +E+ + FI EHG++ EG+ R   QA  V    +++++ F+ G +  F  + D H +A
Sbjct: 23  PILVEQCVDFIREHGLKEEGLFRLPGQANLV----KQLQDAFDAGERPSFDSDTDVHTVA 78

Query: 300 DCVKYVIRELPSSPVP-------ASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKL 352
             +K  +RELP   +P        SC   L +      G  +       +   P+ N  L
Sbjct: 79  SLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQ-----VSILPKVNYNL 133

Query: 353 LQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
           L  I   +  V S+ + N+MS   +A    P +LRP
Sbjct: 134 LSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRP 169

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 242 DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDA---HII 298
           +  P  ++K I FI +HG+  EGI R+      V + +  F +        E     H +
Sbjct: 13  NDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDV 72

Query: 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILM 358
           AD +K  +R+LP   + +      +EA   +      A    ++   P  NR  L+ ++ 
Sbjct: 73  ADVLKRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIG 132

Query: 359 MMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
            +  V    ++N+MS   +A    P L + 
Sbjct: 133 HLYRVQKHSDENQMSVHNLALVFGPTLFQT 162

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 32/222 (14%)

Query: 229 VIGRPILLALED----VDGT--PSFLEKAIRFIEEHGVQVEGILR---QAAYVDDVHRRI 279
           + G P+   LE     V G+  P   +K I  +EE G++ EGILR    A  V  + + +
Sbjct: 1   LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQEL 60

Query: 280 -REFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVS-- 335
             +F +G   +  +   H  A  +K  IRELP   +        L A             
Sbjct: 61  EAKFYEGTFLWD-QVKQHDAASLLKLFIRELPQPLLT----VEYLPAFYSVQGLPSKKDQ 115

Query: 336 --AMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGE 393
             A+   +L   PE NR  L+ +L  +Q V   + +N+M+   VA  MAP L  P     
Sbjct: 116 LQALNLLVL-LLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKHS 174

Query: 394 CEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435
            + E+          ++  AA  AN    I+  L+   D ++
Sbjct: 175 KDNESL-------QEEVNMAAGCAN----IMRLLIRYQDLLW 205

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score = 63.5 bits (154), Expect = 2e-11
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPE----ED--AHII 298
           P  LEK +  +E HG+  EGI R++   +    R++E  Q   +  PE    E+   H I
Sbjct: 16  PIVLEKLLEHVEMHGLYTEGIYRKSGSAN----RMKELHQ-LLQADPENVKLENYPIHAI 70

Query: 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILM 358
              +K  +RELP   +  +  N  L A               +LE  P  N   L+R++ 
Sbjct: 71  TGLLKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIF 130

Query: 359 MMQTVASSKNQNRMSTSAVAACMAPLLLR 387
            +  VA  ++ NRMS +A+A   AP LLR
Sbjct: 131 HLVKVALEEDVNRMSPNALAIVFAPCLLR 159

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 259 GVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASC 318
           G Q EGI R    +D+V+      +Q     S  ED H+ A  +K  +REL    +P + 
Sbjct: 37  GFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLLKLWLRELEEPLIPDAL 96

Query: 319 CNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN--QNRMSTSA 376
               + A      +        I++  P  NR +L  ++  +Q  A  +N    +M  S 
Sbjct: 97  YQQCISASEDPDKA------VEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSN 150

Query: 377 VAACMAPLLLR 387
           +A   AP +LR
Sbjct: 151 LAMVFAPNILR 161

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 17/188 (9%)

Query: 244 TPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIR-EFEQGK--TEFSPEE--DAHII 298
            P  L+K ++ IE  G+ V G+ R         + +R  FE+     E S E   D ++I
Sbjct: 18  VPIVLQKCVQEIERRGLDVIGLYRLCGSAA-KKKELRDAFERNSAAVELSEELYPDINVI 76

Query: 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRT---AILETFPEPNRKLLQR 355
              +K  +RELP   +       +LEA      + V        +I++  P   +  L  
Sbjct: 77  TGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLL 136

Query: 356 ILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAA 415
           +L  +  V S+  +N+M+   +A C  P+L+             F+  G      + A +
Sbjct: 137 LLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQE--------FSRYGISPTSKMAAVS 188

Query: 416 AANHAQAI 423
             +  Q I
Sbjct: 189 TVDFKQHI 196

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score = 62.1 bits (151), Expect = 7e-11
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 7/151 (4%)

Query: 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK----TEFSPEEDAHII 298
             P  L+    FIE+HG+ V+GI R +    ++ R   EF+  +    T+    +D H +
Sbjct: 17  DVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSV 75

Query: 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDRGS-RVSAMRTAILETFPEPNRKLLQRIL 357
           +   K   RELP+  +         EA        R+  +   I +  P P+ + L+ ++
Sbjct: 76  SSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI-QQLPPPHYRTLEFLM 134

Query: 358 MMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
             +  +A   +   M    +A   AP LLR 
Sbjct: 135 RHLSRLAKYCSITNMHAKNLAIVWAPNLLRS 165

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 57.2 bits (138), Expect = 4e-10
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 17/113 (15%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           V K G L+  S G G  SWKKR+F+L +++L++++S       K          IDL+  
Sbjct: 1   VIKEGWLYKKSGG-GKKSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGS------IDLSGC 53

Query: 144 GSVVVKAD------KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190
            +V    D           +   D +      L+AES E+   W  AL  A+A
Sbjct: 54  -TVREAPDPDSSKKPHCFEIKTSDRKT---LLLQAESEEEREKWVEALRKAIA 102

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score = 58.9 bits (142), Expect = 7e-10
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 9/148 (6%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSP----EEDAHIIA 299
           P  +EK I +IE HG+  EGI R++   +    +I+E  QG  T+ +     + + H+IA
Sbjct: 16  PLVVEKLINYIEMHGLYTEGIYRKSGSTN----KIKELRQGLDTDANSVNLDDYNIHVIA 71

Query: 300 DCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMM 359
              K  +R+LP+  +        L A              ++++     +   L+R++  
Sbjct: 72  SVFKQWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFH 131

Query: 360 MQTVASSKNQNRMSTSAVAACMAPLLLR 387
           +  +A  +  NRMS +A+A   AP +LR
Sbjct: 132 LVRIALQEETNRMSANALAIVFAPCILR 159

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           V K G L     G G  SWKKR+F+L    L++++    +  +    + L+  G  +   
Sbjct: 1   VIKEGWLLKKGSG-GRKSWKKRYFVLFDGVLLYYKDSKKSSSRPKGSIPLS--GCQVTKV 57

Query: 144 GSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190
                   K    +      D   F L+AES E+  +W  A+ +A+ 
Sbjct: 58  PDSEDGKRKNCFEIRTG---DRETFLLQAESEEERKEWVKAIRSAIR 101

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 54.3 bits (130), Expect = 3e-09
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 13/102 (12%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS 145
           K G L     G G  SWKKRWF+L    L++++S   +  +         G I L++   
Sbjct: 1   KEGWLKKRG-GKGLKSWKKRWFVLFDDVLLYYKSKKDSSKKP-------KGLIPLSDGLE 52

Query: 146 VVV---KADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTA 184
           V +           ++ PD   GR + L+AES E+  +W  A
Sbjct: 53  VELVSSSGKPNCFELVTPDR--GRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 9/151 (5%)

Query: 246 SFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRI------REFEQGKTEFSPEE-DAHII 298
            F+ K I  +E  G+  +G+ R       V + +      +    G  +    E +   I
Sbjct: 30  KFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTI 89

Query: 299 ADCVKYVIRELPSSPVPASCCNALLEARRT-DRGSRVSAMRTAILETFPEPNRKLLQRIL 357
              +K  +R LP   +     N  + A ++ +  SRV+A+ + + +  PE NR++L+ ++
Sbjct: 90  TSALKTYLRNLPEPLMTYELHNDFINAAKSENLESRVNAIHSLVHK-LPEKNREMLELLI 148

Query: 358 MMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
             +  V+    +N M+ S +     P LLRP
Sbjct: 149 KHLTNVSDHSKKNLMTVSNLGVVFGPTLLRP 179

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 24/197 (12%)

Query: 248 LEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEE-----DAHIIADCV 302
           +E  +  + E G+  EG+ R       + R     + G   FS        D H +A  +
Sbjct: 24  IEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAG--TFSLPLDEFYSDPHAVASAL 81

Query: 303 KYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQ 361
           K  +RELP   +  +     ++A  + D   R+ A+   IL   P  NR  L+ ++  + 
Sbjct: 82  KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIW-RILNKLPRENRDNLRYLIKFLS 140

Query: 362 TVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQ 421
            +A   ++N+MS S +A  +AP LL                  +GS   + A  +  H  
Sbjct: 141 KLAQKSDENKMSPSNIAIVLAPNLLWAKN--------------EGSLAEMAAGTSV-HVV 185

Query: 422 AIVITLLEEYDKIFGEG 438
           AIV  ++   D  F   
Sbjct: 186 AIVELIISHADWFFPGE 202

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score = 55.7 bits (134), Expect = 8e-09
 Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 8/165 (4%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFS---PEEDAHIIADC 301
           P  + + +  +E  G++  GI R +    D+      F+    + S    E D + IA  
Sbjct: 17  PYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGT 76

Query: 302 VKYVIRELPSSPVPASCCNALLEARR-TDRGSRVSAMRTAILETFPEPNRKLLQRILMMM 360
           +K   RELP             E    +D  ++ S M   +L + P+PN      +L  +
Sbjct: 77  LKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCM-LNLLLSLPDPNLVTFLFLLHHL 135

Query: 361 QTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGD 405
           + VA  +  N+MS   +A    P LLRP    E E +   N   D
Sbjct: 136 KRVAEREEVNKMSLHNLATVFGPTLLRP---SEKESKIPTNTMTD 177

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 236 LALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPE 292
           L L + D  P+ + + I+ IE  G+ +EGI R +  V  V++    F++        SPE
Sbjct: 8   LILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPE 67

Query: 293 E---DAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEP 348
           +   D H +A  +K   RELP   +  +     +EA +  D   R  A+   I +  P+ 
Sbjct: 68  DYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLIND-LPDA 126

Query: 349 NRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL 386
           N   L+ ++  +  +   ++ NRMS + +A    P L+
Sbjct: 127 NYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLM 164

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 31/179 (17%)

Query: 237 ALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-----TEFSP 291
           A +  DG P  ++K    IE   + ++GI R       V +  + FE GK     +E SP
Sbjct: 9   AKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSP 68

Query: 292 EEDAHIIADCVKYVIRELPSSPVPASCCNALL----EARR---TDRGSRVSA-----MRT 339
               H I++ +K  +R+LP   +     N  +    E++    T    + S      M T
Sbjct: 69  ----HDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCT 124

Query: 340 AI----------LETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
            +          L   P PN   LQ +++ +  V+    +N+MS S +     P L+RP
Sbjct: 125 ELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGPTLIRP 183

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 18/121 (14%)

Query: 82  NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
            AV K+G  ++  KG    +WKKRWF+L  T L ++++D         E  L L  IDL 
Sbjct: 4   EAVLKAG--YLEKKGERRKTWKKRWFVLRPTKLAYYKND--------KEYRL-LRLIDLT 52

Query: 142 NSGSVV---VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSA 198
           +  +     +K       ++ P     R F ++A+S  ++  W +A+  A     +T + 
Sbjct: 53  DIHTCTEVQLKKHDNTFGIVTPA----RTFYVQADSKAEMESWISAINLARQALRATITP 108

Query: 199 T 199
            
Sbjct: 109 N 109

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 42/165 (25%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 229 VIGRPILLALEDVDGT-PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT 287
           V G P+L+ L+      P  +++A+R++  + +   G+ R++     V  RI++      
Sbjct: 4   VFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSG----VKSRIQKLRS-MI 58

Query: 288 EFSPE------EDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTA 340
           E S +      + A+ +AD +K   R+LP   +        +   +   +  R+ A++ A
Sbjct: 59  ESSTDNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCA 118

Query: 341 ILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLL 385
           IL   P+ NR++LQ +L  +  VA++  +N+M+ + +A C+AP L
Sbjct: 119 IL-LLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSL 162

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPE----EDAHIIAD 300
           P  +E     +E  G++  GI R       +     E  +G  +   +     D ++++ 
Sbjct: 19  PLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSS 78

Query: 301 CVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILMM 359
            +K   R+LP            +EA R  D   R+  +R  ++ + P+ + + L+ ++  
Sbjct: 79  LLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRR-LIHSLPDHHYETLKHLIRH 137

Query: 360 MQTVASSKNQNRMSTSAVAACMAPLLLRP 388
           ++TVA +   N+M    +A    P L+R 
Sbjct: 138 LKTVADNSEVNKMEPRNLAIVFGPTLVRT 166

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 6/146 (4%)

Query: 248 LEKAI----RFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVK 303
           L K I      + + G   EGI R++A          +   G       E   ++A  +K
Sbjct: 15  LPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLK 74

Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGS-RVSAMRTAILETFPEPNRKLLQRILMMMQT 362
             +R +P S + +      + A   +    +++ ++  +L+  P PN  LL+ ++ ++  
Sbjct: 75  DFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQ-RLLDKLPRPNVLLLKHLICVLHN 133

Query: 363 VASSKNQNRMSTSAVAACMAPLLLRP 388
           ++ +   N+M    +A C+AP LL P
Sbjct: 134 ISQNSETNKMDAFNLAVCIAPSLLWP 159

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSP---EEDAHIIADC 301
           P+ +   +  IE  G+  EG+ R +    +V     +F +GKT   P   + D H+I  C
Sbjct: 18  PALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKT--VPNLSKVDIHVICGC 75

Query: 302 VKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMM 360
           +K  +R L    +  +     +EA    D  +  +A+  AI E  P+PNR  L  +++ +
Sbjct: 76  LKDFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISE-LPQPNRDTLAFLILHL 134

Query: 361 QTVASSKNQNRMSTSAVAACMAPLL 385
           Q VA S  + +M  + +A    P +
Sbjct: 135 QRVAQSP-ECKMDINNLARVFGPTI 158

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%)

Query: 236 LALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-----TEFS 290
           +  +  D  P  ++K    IE   + V+GI R +     V +  + FE GK     +E S
Sbjct: 8   VPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELS 67

Query: 291 PEEDAHIIADCVKYVIRELPSSPVPASCCNALLE-ARRTDRGSR--------------VS 335
           P    H I+  +K  +R+LP   +     N  +  A+   R +               + 
Sbjct: 68  P----HDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIR 123

Query: 336 AMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389
            ++  +L   P  N   LQ ++  +  VA    +N+MS + +     P L+RP 
Sbjct: 124 KLKD-LLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPR 176

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG--KTEFSPE--EDAHIIAD 300
           P  ++  IR IE  G+Q EG+ R + + +++      F++   K + S     D ++I  
Sbjct: 17  PMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITG 76

Query: 301 CVKYVIRELPSSPVPASCCNALLEARRT-DRGSRVSAMRTAILETFPEPNRKLLQRILMM 359
            +K   R+LP   +        ++A +  +   R+ A+  A L   P  + + L+ ++  
Sbjct: 77  ALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEA-LMLLPPAHYETLRYLMEH 135

Query: 360 MQTVASSKNQNRMSTSAVAACMAPLLLRP 388
           ++ V   +  N+M+   +     P L+RP
Sbjct: 136 LKRVTLHEKDNKMNAENLGIVFGPTLMRP 164

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 8/145 (5%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHI--IADCV 302
           P FL  A  F+ +H +  EG+ R++  V        + E G+   S    A    +A  +
Sbjct: 21  PKFLVDACTFLLDH-LSTEGLFRKSGSVVRQKELKAKLEGGEACLS---SALPCDVAGLL 76

Query: 303 KYVIRELPSSPVPASCCNALLEARRTDRG-SRVSAMRTAILETFPEPNRKLLQRILMMMQ 361
           K   RELP   +P     ALL+A+       R SA         P+ +   L+     + 
Sbjct: 77  KQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTC-LLPDEHVNTLRYFFSFLY 135

Query: 362 TVASSKNQNRMSTSAVAACMAPLLL 386
            VA   ++N+M +S +A   AP L 
Sbjct: 136 DVAQRCSENKMDSSNLAVIFAPNLF 160

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat 2

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 79  RAGNAVFKSGPLFISSKGIGWTS---WKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTL 135
           R+     KSG L+    G    S   WK RWF+L  T L ++ +D         E    L
Sbjct: 2   RSKQEALKSGWLYKKGGGSSTLSRKNWKSRWFVLRDTVLKYYEND--------QEGAKAL 53

Query: 136 GGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190
           G ID+    S     D       F      R +   AES ED   W + L    +
Sbjct: 54  GTIDI---RSAKEIVDNTPKENGFDITTPSRTYHFVAESPEDASQWFSVLTRVHS 105

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 16/107 (14%)

Query: 98  GW--------TSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVK 149
           GW         +W++RWF+L    L +F+          SE     G IDL++  +V   
Sbjct: 11  GWLTKQGGSIKTWRRRWFVLKQGKLFYFKD-----EDPDSE---PRGVIDLSDCLTVKSA 62

Query: 150 ADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
            +       F      R F L A+S ++  +W +A+  A+ +   + 
Sbjct: 63  EEATNKEFAFEVSTPERTFYLIADSEKEKEEWISAIGRAIVKLSRSK 109

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 5/147 (3%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHII---ADC 301
           P  +E  IRFI  +G+Q +GI R +    +V+     FE+G+   + +++ H I   A  
Sbjct: 19  PLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGV 78

Query: 302 VKYVIRELPSSPVPASCCNALLEARRTDRGS-RVSAMRTAILETFPEPNRKLLQRILMMM 360
           +K   R L +   P      L+   + +  + RV  +R  IL T P     +++ +   +
Sbjct: 79  LKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIRE-ILSTLPRSVIIVMRYLFAFL 137

Query: 361 QTVASSKNQNRMSTSAVAACMAPLLLR 387
             ++   ++N M    +A C  P L+ 
Sbjct: 138 NHLSQFSDENMMDPYNLAICFGPTLMP 164

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 19/93 (20%)

Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKK----LLT 156
           +WK+RWF+L +  L +++S P+ + +K        G I L+ S   + +A+      ++T
Sbjct: 14  TWKRRWFVLKNGELFYYKS-PNDVIRK------PQGQIALDGSCE-IARAEGAQTFEIVT 65

Query: 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189
                  + R + L A+S  DL +W   ++N L
Sbjct: 66  -------EKRTYYLTADSENDLDEWIRVIQNVL 91

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 231 GRPILLALEDV---DGT--PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQ- 284
           G  + LA+E     DG   P    + I ++E+HG++ EGI +    V  +  ++ E +  
Sbjct: 2   GASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYK----VSGIKSKVDELKAA 57

Query: 285 -GKTEFS--PEEDAHIIADCVKYVIRELPSSPVPASCCNALLE--ARRTDRGSRVSAMRT 339
             + E     E +   +A  +K  +RELP  P+         E    R     R   ++ 
Sbjct: 58  YNRRESPNLEEYEPPTVASLLKQYLRELPE-PLLTKELMPRFEEACGRPTEAEREQELQR 116

Query: 340 AILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLL 385
            +L+  PE NR LL  +++ M  V + + + +M+   ++  ++P +
Sbjct: 117 -LLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTV 161

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|241419 cd13265, PH_evt, Evectin Pleckstrin homology (PH) domain

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 12/94 (12%)

Query: 102 WKKRWFIL-THTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS---GSVVVKADKK---L 154
           WKK WF+L +   L ++  D S    +G  +N+ +   ++        V     +    L
Sbjct: 19  WKKNWFVLYSDGELSYY-EDESRRDVEG-RINMPIECRNIRVGLECRDVQPPEGRSRDCL 76

Query: 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
           L ++    RDG+   L AES +D   WK ALE+A
Sbjct: 77  LQIVT---RDGKRLILCAESADDALAWKLALEDA 107

There are 2 members of the evectin family (also called pleckstrin homology domain containing, family B): evt-1 (also called PLEKHB1) and evt-2 (also called PLEKHB2). evt-1 is specific to the nervous system, where it is expressed in photoreceptors and myelinating glia. evt-2 is widely expressed in both neural and nonneural tissues. Evectins possess a single N-terminal PH domain and a C-terminal hydrophobic region. evt-1 is thought to function as a mediator of post-Golgi trafficking in cells that produce large membrane-rich organelles. It is a candidate gene for the inherited human retinopathy autosomal dominant familial exudative vitreoretinopathy and a susceptibility gene for multiple sclerosis. evt-2 is essential for retrograde endosomal membrane transport from the plasma membrane (PM) to the Golgi. Two membrane trafficking pathways pass through recycling endosomes: a recycling pathway and a retrograde pathway that links the PM to the Golgi/ER. Its PH domain that is unique in that it specifically recognizes phosphatidylserine (PS), but not polyphosphoinositides. PS is an anionic phospholipid class in eukaryotic biomembranes, is highly enriched in the PM, and plays key roles in various physiological processes such as the coagulation cascade, recruitment and activation of signaling molecules, and clearance of apoptotic cells. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 91  FISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKA 150
           ++  KG   TS++KRWF+L    L +F       P         LG I L      + + 
Sbjct: 13  YLWKKGERNTSYQKRWFVLKGNLLFYFEKKGDREP---------LGVIVLEGCTVELSED 63

Query: 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
           ++     +  DG   R++ L AES ED+  W  AL  A
Sbjct: 64  EEPYAFAIRFDGPGSRSYVLAAESQEDMESWMKALSRA 101

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 1

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 82  NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
             V KSG L    K      + + WF+L    L ++RS         +++    G IDL 
Sbjct: 27  GEVVKSGYLSKRGKRTP--RYNRYWFVLKGDVLSWYRSS--------TDLYFPHGTIDLR 76

Query: 142 NSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187
             G      DK   T  F    + R +T KA+S     +W  AL+ 
Sbjct: 77  Y-GISAEITDKDKETTHFKITTNSRTYTFKADSEPSAKEWVKALQK 121

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 130

>gnl|CDD|241451 cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin homology (PH) domain, repeat 3

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 8/52 (15%)

Query: 96  GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV 147
             G  + KKRWF+LT  SL +++S      ++ +   L LG + LN+  SVV
Sbjct: 25  KGGNLTKKKRWFVLTPNSLDYYKS-----SERNA---LKLGSLVLNSLCSVV 68

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the third MyoX PH repeat. PLEKHH3/Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) member 3 is also part of this CD and like MyoX contains a FERM domain, a MyTH4 domain, and a single PH domain. Not much is known about the function of PLEKHH3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241438 cd13284, PH_OSBP_ORP4, Human Oxysterol binding protein and OSBP-related protein 4 Pleckstrin homology (PH) domain

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 16/100 (16%)

Query: 99  WTS----WKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKL 154
           WT+    +++RWF+L++  L ++R+         +E+  T  G  +N +G+++   D   
Sbjct: 8   WTNYLKGYQRRWFVLSNGLLSYYRNQ--------AEMAHTCRG-TINLAGALIHTEDSCN 58

Query: 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPS 194
             V+   G   + F LKA S  +   W TALE A A+A  
Sbjct: 59  F-VISNGGT--QTFHLKASSEVERQRWVTALELAKAKAIR 95

Human OSBP is proposed to function is sterol-dependent regulation of ERK dephosphorylation and sphingomyelin synthesis as well as modulation of insulin signaling and hepatic lipogenesis. It contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. OSBPs and Osh1p PH domains specifically localize to the Golgi apparatus in a PtdIns4P-dependent manner. ORP4 is proposed to function in Vimentin-dependent sterol transport and/or signaling. Human ORP4 has 2 forms, a long (ORP4L) and a short (ORP4S). ORP4L contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. ORP4S is truncated and contains only an OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 99

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 27/168 (16%)

Query: 255 IEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-----TEFSPEEDAHIIADCVKYVIREL 309
           IE   + V+GI R +     V +  + FE G+     +  SP    H I   +K+ ++EL
Sbjct: 27  IENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSP----HDITSVLKHFLKEL 82

Query: 310 PSSPVPASCCNA-------LLEARRTDRGSR------VSAMRTAILETFPEPNRKLLQRI 356
           P   +P    +        L         S       + +++  +L   P  N   L+ +
Sbjct: 83  PEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKE-LLGRLPVSNYNTLRHL 141

Query: 357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGE----CEIETDF 400
           +  +  VA     N+MS + +     P LLRPL+ G+    C ++T +
Sbjct: 142 MAHLYRVAERFEDNKMSPNNLGIVFGPTLLRPLVGGDVSMICLLDTGY 189

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|241433 cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) domain

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           V KSG + +   G+    W KR+ +L   SL F++++ S      S  +L++   D++N 
Sbjct: 1   VVKSGWVSVKEDGLLSFRWSKRYLVLREQSLDFYKNESS------SSASLSIPLKDISN- 53

Query: 144 GSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDW 181
              V + D K            ++  +  +S ++LYDW
Sbjct: 54  ---VSRTDLKPYCFEIVRKSSTKSIYISVKSDDELYDW 88

Budding yeast contain two main p21-activated kinases (PAKs), Cla4 and Ste20. The yeast Ste20 protein kinase is involved in pheromone response, though the function of Ste20 mammalian homologs is unknown. Cla4 is involved in budding and cytokinesis and interacts with Cdc42, a GTPase required for polarized cell growth as is Pak. Cla4 and Ste20 kinases share a function in localizing cell growth with respect to the septin ring. They both contain a PH domain, a Cdc42/Rac interactive binding (CRIB) domain, and a C-terminal Protein Kinase catalytic (PKc) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 91

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 34/162 (20%)

Query: 247 FLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT------EFSPEEDAHIIAD 300
           +LEK +R        VEG+ R+                G         F      H  A 
Sbjct: 19  YLEKNLR--------VEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHA----HDCAT 66

Query: 301 CVKYVIRELPSSPV------PASC-----CNALLEARRT---DRGSRVSAMRTAILETFP 346
            +K  + ELP  P+      PA       C    +  +T   D+   + A++  +L   P
Sbjct: 67  VLKGFLGELPE-PLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLL-LLP 124

Query: 347 EPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
           E NR LL+ IL ++   A  +++N+MS   +A    P L+ P
Sbjct: 125 EENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICP 166

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 27/105 (25%), Positives = 36/105 (34%), Gaps = 31/105 (29%)

Query: 96  GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLL 155
           G G  +WKKRWF+L    L ++         K  E    LG I L      +  A     
Sbjct: 18  GSGLKNWKKRWFVLKDNCLYYY---------KDPEEEKALGSILL--PSYTISPAS---- 62

Query: 156 TVLFPDGRDGRAFTLK------------AESLEDLYDWKTALENA 188
               P     R F  K            A++ E++  W  AL  A
Sbjct: 63  ----PSDEINRKFAFKAEHAGMRTYYFAADTQEEMEQWMKALSLA 103

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|241480 cd13326, PH_CNK_insect-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 95  KGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKL 154
           KG G   W KRWF+L  ++L  FRS  S      ++  + L G       +V    + K 
Sbjct: 11  KGKGGGKWAKRWFVLKGSNLYGFRSQES----TKADCVIFLPGF------TVSPAPEVKS 60

Query: 155 LTVLFPDGRDGRAFTLKAESLEDLYDW 181
               F     G  F   AES ED+  W
Sbjct: 61  RKYAFKVYHTGTVFYFAAESQEDMKKW 87

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from insects, spiders, mollusks, and nematodes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 20/91 (21%), Positives = 46/91 (50%)

Query: 680 SRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELG 739
           S   +  ER   L+ ++A L+++L + +++   ++    E        +   E+ + EL 
Sbjct: 59  SDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELA 118

Query: 740 EIAQAETDIINLKQKAKDLRVQLSEQLEKND 770
            I Q   + I L ++ ++LR +L+E  ++N+
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENE 149

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|241401 cd13247, BAR-PH_APPL, Adaptor protein containing PH domain, PTB domain, and Leucine zipper motif Bin1/amphiphysin/Rvs167 (BAR)-Pleckstrin homology (PH) domain

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 15/129 (11%)

Query: 62  SGQPPGPPPGPNDHRITRAGNAVFKSGPLFISSKGIG-WTSWKKRWFILTHTSLVFFRSD 120
                     P++  +    +   K+G LF+ SK       W + +F     +L+    D
Sbjct: 5   KSNDDAYEDDPDETYLAPNRSLTQKAGYLFLRSKTGLVTNRWDRVYFFTQGGNLMSQPRD 64

Query: 121 PSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKK--LLTVLFPDGRDGRAFTLKAESLEDL 178
             A    GS   L L   DL+N+       + +  +  +  PDG+  +A  L+AES +D 
Sbjct: 65  EVA----GS---LVL---DLDNTSVQAADCEDRRFVFQITSPDGK--KAIVLQAESEKDR 112

Query: 179 YDWKTALEN 187
            +W   + N
Sbjct: 113 EEWIATINN 121

APPL (also called DCC-interacting protein (DIP)-13alpha) interacts with oncoprotein serine/threonine kinase AKT2, tumor suppressor protein DCC (deleted in colorectal cancer), Rab5, GIPC (GAIP-interacting protein, C terminus), human follicle-stimulating hormone receptor (FSHR), and the adiponectin receptors AdipoR1 and AdipoR2. There are two isoforms of human APPL: APPL1 and APPL2, which share about 50% sequence identity. APPL has a BAR and a PH domain near its N terminus, and the two domains are thought to function as a unit (BAR-PH domain). C-terminal to this is a PTB domain. Lipid binding assays show that the BAR, PH, and PTB domains can bind phospholipids. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241407 cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 18/92 (19%)

Query: 102 WKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKK--LLTVLF 159
           ++KRW +    SL +F S+      KG    + L  I      +V    D K  ++T   
Sbjct: 17  FQKRWVVFDGDSLRYFNSEKEMYS-KG---IIPLSSIK-----TVRSVGDNKFEVVT--- 64

Query: 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191
                 R F  +AES ++   W + L  A+++
Sbjct: 65  ----GNRTFVFRAESEDERNLWVSTLMAAISE 92

ARAP proteins (also called centaurin delta) are phosphatidylinositol 3,4,5-trisphosphate-dependent GTPase-activating proteins that modulate actin cytoskeleton remodeling by regulating ARF and RHO family members. They bind phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) and phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2) binding. There are 3 mammalian ARAP proteins: ARAP1, ARAP2, and ARAP3. All ARAP proteins contain a N-terminal SAM (sterile alpha motif) domain, 5 PH domains, an ArfGAP domain, 2 ankyrin domain, A RhoGap domain, and a Ras-associating domain. This hierarchy contains the first PH domain in ARAP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 93

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 614 NESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQRKIA---DEVKG 670
                  +R           +  +ES         EI+ LE+   +L+ ++    +E   
Sbjct: 831 RRIAATERRLEDLEEQIEELSEDIES------LAAEIEELEELIEELESELEALLNERAS 884

Query: 671 NEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP-IPDT 729
            E   A L S  + L E    LE+  + L+ +L++ R+K   +E  L         + + 
Sbjct: 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944

Query: 730 IDEKTKVELGEIAQ----AETDIINLKQKAKDLRVQLSE 764
           + E+  + L E        E D    +++ K L  ++ E
Sbjct: 945 LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 79  RAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGI 138
            AG  V KSG  +   +G    +WK+R+FIL   ++ +++S+    P         L  I
Sbjct: 3   PAGRNVIKSG--YCVKQGAVRKNWKRRYFILDDNTISYYKSETDKEP---------LRTI 51

Query: 139 DLNNSGSVVVKADKKLLT--VLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191
            L     V       LL    LF      R F ++A+S ED++ W  A+  A+  
Sbjct: 52  PLKEVLKVHECLSGDLLMRDNLFEIITTSRTFYIQADSPEDMHSWIKAISGAIVA 106

The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 33/120 (27%)

Query: 86  KSGPLFI-SSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSG 144
           K G LF  SS      +WK+RWF + +  LV+ +                          
Sbjct: 1   KEGYLFKRSSNAFK--TWKRRWFSIQNGQLVYQKRF--------------------KKDT 38

Query: 145 SVVVKADKKLLTVLFPDGRD----------GRAFTLKAESLEDLYDWKTALENALAQAPS 194
             VV  D +L TV   +  D           +++ L+AES ED   W  A++ A+A A +
Sbjct: 39  PTVVVEDLRLCTVKPCEDIDRRFCFEVVSPTKSYMLQAESEEDRQAWIQAIQAAIASALN 98

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 647 EVEIQRLEDTKSDLQRKIAD-EVKGNEILE--ASLESRKKALHERRLALENDVARLKDQL 703
           E E+++LE+  + L +++ + E +  E+ E     E            LE  + +LK++L
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 704 QKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLS 763
           +  R+    + A L   N        + E+ +     IA  E  + +L+++ ++L   + 
Sbjct: 799 KALREALDELRAELTLLNEEA---ANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 764 E 764
            
Sbjct: 856 S 856

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 20/136 (14%)

Query: 644 SDNEVEIQRLEDTKSDLQRKIA----------DEVKGNEILEASLESRKKALHERRLALE 693
              E E++ LE  +  L+++I           +++   E     LE   + L E    LE
Sbjct: 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869

Query: 694 NDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQ 753
            +   L+D+L++  +++  +E  L E            E  +++  EI +    +  L+ 
Sbjct: 870 AEKEELEDELKELEEEKEELEEELRELE---------SELAELKE-EIEKLRERLEELEA 919

Query: 754 KAKDLRVQLSEQLEKN 769
           K + L V+L E  E+ 
Sbjct: 920 KLERLEVELPELEEEL 935

Length = 1163

>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 17/98 (17%)

Query: 91  FISSKGIGWTSWKKRWFILTHTS--LVFFRSDPSAIPQKGSEVNLTLGGIDLNN-SGSVV 147
            + +KG+  T WK RWF+       L ++RS     P         LG IDL+  + S  
Sbjct: 8   KLETKGLLKT-WKSRWFVFDERKCQLYYYRSPQDITP---------LGSIDLSGAAFSYD 57

Query: 148 VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTAL 185
            +A+K    +  P    GR + LKA   + +  W   L
Sbjct: 58  PEAEKGTFEIHTP----GRVYILKASDRQAMLYWLQEL 91

TBC1D2A (also called PARIS-1/Prostate antigen recognized and identified by SEREX 1 and ARMUS) contains a PH domain and a TBC-type GTPase catalytic domain. TBC1D2A integrates signaling between Arf6, Rac1, and Rab7 during junction disassembly. Activated Rac1 recruits TBC1D2A to locally inactivate Rab7 via its C-terminal TBC/RabGAP domain and facilitate E-cadherin degradation in lysosomes. The TBC1D2A PH domain mediates localization at cell-cell contacts and coprecipitates with cadherin complexes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 7/151 (4%)

Query: 242 DGTPSFLEKAIRFIEEHGVQVEGILRQ--AAYVDDVHRRIREFEQGKTEFSPEEDAHIIA 299
           D  P  L K +  IE+ G++   + R   ++ + ++ R+I + +    +   + D   +A
Sbjct: 13  DVAPPLLIKLVEAIEKKGLESSTLYRTQSSSSLTEL-RQILDCDAASVDLE-QFDVAALA 70

Query: 300 DCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSA--MRTAILETFPEPNRKL-LQRI 356
           D +K  + +LP+  +PA   + ++   +  + S   A  +R  I          L LQ +
Sbjct: 71  DALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYL 130

Query: 357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387
           L     +  S ++N +S  A+A   +PLL R
Sbjct: 131 LKHFFRLCQSSSKNLLSARALAEIFSPLLFR 161

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	804
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	100.0
KOG4271	1100	consensus Rho-GTPase activating protein [Signal tr	100.0
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	100.0
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	100.0
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	100.0
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	100.0
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	100.0
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	100.0
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	100.0
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	100.0
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	100.0
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	100.0
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	100.0
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	100.0
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	100.0
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	100.0
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	100.0
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	100.0
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	100.0
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	100.0
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	100.0
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	100.0
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	100.0
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	100.0
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	100.0
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	100.0
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	100.0
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	100.0
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	100.0
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	100.0
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	100.0
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	100.0
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	100.0
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	100.0
KOG4407	1973	consensus Predicted Rho GTPase-activating protein	100.0
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	100.0
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	100.0
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	100.0
KOG1450	650	consensus Predicted Rho GTPase-activating protein	99.97
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	99.97
KOG4270	577	consensus GTPase-activator protein [Signal transdu	99.97
KOG2200	674	consensus Tumour suppressor protein p122-RhoGAP/DL	99.97
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	99.97
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	99.96
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	99.96
KOG4269	1112	consensus Rac GTPase-activating protein BCR/ABR [S	99.96
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	99.95
KOG4406	467	consensus CDC42 Rho GTPase-activating protein [Sig	99.94
KOG2710	412	consensus Rho GTPase-activating protein [Signal tr	99.93
KOG1453	918	consensus Chimaerin and related Rho GTPase activat	99.9
KOG4724	741	consensus Predicted Rho GTPase-activating protein	99.9
KOG3564	604	consensus GTPase-activating protein [General funct	99.9
PF14389	88	Lzipper-MIP1: Leucine-zipper of ternary complex fa	99.87
KOG4271	1100	consensus Rho-GTPase activating protein [Signal tr	99.75
KOG1452	442	consensus Predicted Rho GTPase-activating protein	99.74
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	99.6
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.6
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.58
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.55
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.53
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	99.52
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.51
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.49
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.47
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.43
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.43
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.39
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	99.39
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.39
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.39
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.36
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.35
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.34
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.32
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.32
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.31
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.21
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.19
KOG4370	514	consensus Ral-GTPase effector RLIP76 [Signal trans	99.18
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.17
KOG0930	395	consensus Guanine nucleotide exchange factor Cytoh	99.16
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.12
KOG3565	640	consensus Cdc42-interacting protein CIP4 [Cytoskel	99.12
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.08
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.02
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	98.98
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	98.94
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	98.93
PF15409	89	PH_8: Pleckstrin homology domain	98.85
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	98.72
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	98.7
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.69
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	98.62
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	98.61
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	98.51
KOG4724	741	consensus Predicted Rho GTPase-activating protein	98.41
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	98.35
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	98.26
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	98.11
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	98.09
KOG0690	516	consensus Serine/threonine protein kinase [Signal	98.08
KOG3640	1116	consensus Actin binding protein Anillin [Cell cycl	97.93
KOG3751	622	consensus Growth factor receptor-bound proteins (G	97.72
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	97.7
KOG1090	1732	consensus Predicted dual-specificity phosphatase [	97.5
KOG0932	774	consensus Guanine nucleotide exchange factor EFA6	97.48
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	97.45
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	97.42
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	97.38
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	97.33
PTZ00267	478	NIMA-related protein kinase; Provisional	97.3
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	97.29
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	97.22
KOG3543	1218	consensus Ca2+-dependent activator protein [Signal	96.71
PF15408	104	PH_7: Pleckstrin homology domain	96.59
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	96.29
KOG0517	2473	consensus Beta-spectrin [Cytoskeleton]	96.06
KOG1453	918	consensus Chimaerin and related Rho GTPase activat	95.91
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	95.87
PLN02866	1068	phospholipase D	95.83
KOG3723	851	consensus PH domain protein Melted [Signal transdu	95.55
PTZ00283	496	serine/threonine protein kinase; Provisional	95.51
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	95.26
KOG3531	1036	consensus Rho guanine nucleotide exchange factor C	95.21
KOG0248	936	consensus Cytoplasmic protein Max-1, contains PH,	95.06
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	94.88
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	94.49
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	94.35
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	93.78
KOG1739	611	consensus Serine/threonine protein kinase GPBP [Si	93.76
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	93.69
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	93.3
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	93.27
KOG1449	670	consensus Predicted Rho GTPase-activating protein	93.18
PF15404	185	PH_4: Pleckstrin homology domain	92.77
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	92.21
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	91.76
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	91.35
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	90.88
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	90.81
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	90.64
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	90.5
PF12240	205	Angiomotin_C: Angiomotin C terminal; InterPro: IPR	90.04
cd00089	72	HR1 Protein kinase C-related kinase homology regio	89.29
PF15406	112	PH_6: Pleckstrin homology domain	88.99
KOG1449	670	consensus Predicted Rho GTPase-activating protein	88.62
PF10186	302	Atg14: UV radiation resistance protein and autopha	88.28
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	86.6
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	86.25
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	85.85
KOG1737	799	consensus Oxysterol-binding protein [Lipid transpo	82.97
KOG4807	593	consensus F-actin binding protein, regulates actin	82.2
KOG3549	505	consensus Syntrophins (type gamma) [Extracellular	82.06
PF00038	312	Filament: Intermediate filament protein; InterPro:	80.08

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-63  Score=548.50  Aligned_cols=355  Identities=22%  Similarity=0.331  Sum_probs=299.0

Q ss_pred             ceeecCCCchhhhccccccccccccceeeccC-CCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcCCC
Q 003668            3 IFQIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAG   81 (804)
Q Consensus         3 ~~~~~~~~~~~~~~d~~~~~~~l~~~iq~tR~-fe~tr~~~e~l~~~~~~m~~~p~~~~~s~~pp~~~~~p~~~~~~~~~   81 (804)
                      +|.|||.|- |||+||.||+++||+.|||||+ |++||.++|+|   +++|.++|.                +.   +.+
T Consensus       206 lf~f~h~g~-el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeL---kKkmke~p~----------------e~---k~p  262 (812)
T KOG1451|consen  206 LFSFFHVGS-ELHQDFKPFKDQLQTSVQNTRNNFNATRAEAEEL---KKKMKESPT----------------ED---KRP  262 (812)
T ss_pred             HHHHhhhhH-HHHhhhhhHHHHHHHHHHHhhhcccchHHHHHHH---HHHHhhCcc----------------cc---cCC
Confidence            355666665 9999999999999999999999 99999999999   999998885                22   122


Q ss_pred             CceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCC--CCCCcceeeecCCeeecCCcceeeecCCCeEEEEE
Q 003668           82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI--PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF  159 (804)
Q Consensus        82 ~~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~--p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~  159 (804)
                      .+.+++||||.++|...+++|.|+||+|.+.+..|.+-.-+.+  ...|+..++.|+.|..+..+    .++|||||++.
T Consensus       263 ~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktd----SIdKRFCFDve  338 (812)
T KOG1451|consen  263 TPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTD----SIDKRFCFDVE  338 (812)
T ss_pred             CCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCccc----ccccceeeeee
Confidence            2368999999999999999999999999999887766443322  23456667999999999885    55999999999


Q ss_pred             ecCCCCcEEEEEecchhhHHHHHHHHHHHhccCCCCCCCCccccccccchhhhccCchhhhcccCCCCCccccchhHhhh
Q 003668          160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALE  239 (804)
Q Consensus       160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~aP~~~~~~~~~~if~~~~~~~~~~s~~~~~~k~~k~~vFGvpLe~ll~  239 (804)
                      ...++|. +++||.+++++..||.||+++.   |.+.  ++.+ +       +..+.                   ..+ 
T Consensus       339 ~~erpgv-iTmQALSE~drrlWmeAMDG~e---p~Y~--s~~~-~-------~~~~~-------------------~qL-  384 (812)
T KOG1451|consen  339 VEERPGV-ITMQALSEKDRRLWMEAMDGAE---PSYT--SGEN-C-------STYKQ-------------------TQL-  384 (812)
T ss_pred             ecccCCe-eehHhhhhhHHHHHHHHhcCCC---cccc--Cccc-c-------chhhh-------------------hhh-
Confidence            9988875 8999999999999999999985   4442  1222 0       00000                   111 


Q ss_pred             cCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHH-hcC---CCC--CCCCCChhhhHHHHHHHHhhCCCCC
Q 003668          240 DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREF-EQG---KTE--FSPEEDAHIIADCVKYVIRELPSSP  313 (804)
Q Consensus       240 ~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~l-d~g---~~~--~~~~~d~h~vAslLK~fLReLPePL  313 (804)
                       .+-...||++||+.|+.+|++++|+||..|.+.+|++|+..+ |..   +.+  ....||+.+|++.||.|||.||+||
T Consensus       385 -d~iGF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPL  463 (812)
T KOG1451|consen  385 -DDIGFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPL  463 (812)
T ss_pred             -hhhhHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchh
Confidence             124578999999999999999999999999999999998875 432   222  2257899999999999999999999


Q ss_pred             CChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCC
Q 003668          314 VPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAG  392 (804)
Q Consensus       314 lp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~  392 (804)
                      +++.++..||.|++.++ +.|+.+||.+++ +||+.||.+|..||+||.+|+.|+..|.||+.||+|||||+||||++  
T Consensus       464 MTY~LHk~FI~AAKsdnq~yRv~aIHsLVH-kLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQE--  540 (812)
T KOG1451|consen  464 MTYELHKVFINAAKSDNQTYRVDAIHSLVH-KLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQE--  540 (812)
T ss_pred             hHHHHHHHHHHHHhccchhhhHHHHHHHHH-hccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchH--
Confidence            99999999999999999 999999999998 99999999999999999999999999999999999999999999984  


Q ss_pred             ccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 003668          393 ECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG  438 (804)
Q Consensus       393 ~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~  438 (804)
                          |+            ++|+|.++.+|-||++||+||++||...
T Consensus       541 ----ET------------VAAiMdIKFQNIVVEILIEnyeKIF~t~  570 (812)
T KOG1451|consen  541 ----ET------------VAAIMDIKFQNIVVEILIENYEKIFKTK  570 (812)
T ss_pred             ----HH------------HHHHHcchhhhhhHHHHHhhhHHHhcCC
Confidence                33            5777777777878999999999999844

>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-46  Score=431.13  Aligned_cols=597  Identities=28%  Similarity=0.271  Sum_probs=463.5

Q ss_pred             CCCCcEEEEEecchhhHHHHHHHHHHHhccCCCC-CCCCccccccccchhhhccCc-hhhhccc-CCCCCccccchhHhh
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALENALAQAPST-GSATGQNGILKNDKAEAANGS-VEQLKEK-PVKFPVIGRPILLAL  238 (804)
Q Consensus       162 ~~dgrty~LQAdSeeE~~eWI~AI~~ai~~aP~~-~~~~~~~~if~~~~~~~~~~s-~~~~~~k-~~k~~vFGvpLe~ll  238 (804)
                      ..+++.|...+++-++..+|-.++..+...+|.+ +.+.+|+|+|...+..+..++ +--+.+- ++.+.++|+|..-.+
T Consensus       286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l  365 (1100)
T KOG4271|consen  286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL  365 (1100)
T ss_pred             hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence            4457788999999999999999999999889988 788999999999877655443 3333433 888999999998888


Q ss_pred             hcCCCCcHHHHHHHHHHHHcCCccCC---eeecCC-CHHHHHHHHHHHh-cCCCCCC--CCCChh--hhHHHHH--HHHh
Q 003668          239 EDVDGTPSFLEKAIRFIEEHGVQVEG---ILRQAA-YVDDVHRRIREFE-QGKTEFS--PEEDAH--IIADCVK--YVIR  307 (804)
Q Consensus       239 ~~~~~VP~~l~~~i~~Le~~Gl~~EG---IFR~sG-~~~~v~~L~~~ld-~g~~~~~--~~~d~h--~vAslLK--~fLR  307 (804)
                      +..++-|.|..+.+.+|+..|+..||   |-|.++ +...|+.-+..|+ .|+..+.  ..++||  .|...++  .-||
T Consensus       366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr  445 (1100)
T KOG4271|consen  366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR  445 (1100)
T ss_pred             hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence            88889999999999999999999999   999999 7777777666675 5664443  345888  5788888  8899


Q ss_pred             hCCCCCCChhhHHHHHHH--HhcCc-hHHHHHHHHHHHhc--CChhHHH----HHHHHHHHHHHHHhhcccCCCCcc-hh
Q 003668          308 ELPSSPVPASCCNALLEA--RRTDR-GSRVSAMRTAILET--FPEPNRK----LLQRILMMMQTVASSKNQNRMSTS-AV  377 (804)
Q Consensus       308 eLPePLlp~~l~~~~l~a--~~~~~-~~ri~~i~~lI~~~--LP~~Nr~----lL~~Ll~~L~~V~~~s~~NkMt~~-NL  377 (804)
                      .++..+.|...+..+..+  +...- +.|+..+...|.+.  .|.+|+.    ++.+|+..+..+..++..|.|++. ..
T Consensus       446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s  525 (1100)
T KOG4271|consen  446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS  525 (1100)
T ss_pred             hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence            999999999888888877  55544 77999999999877  8999888    888888888999999999999999 99


Q ss_pred             hhhhcc-cccC-CCCCCccccccc-cccCCCChHH----HHHHHHHHH-HHHHHHHHHHhhcccccCCCCCCcccc----
Q 003668          378 AACMAP-LLLR-PLLAGECEIETD-FNVGGDGSAQ----LLQAAAAAN-HAQAIVITLLEEYDKIFGEGSASPEEL----  445 (804)
Q Consensus       378 Av~FgP-tLlr-p~~~~~~~~e~d-~~~~g~~s~q----l~~a~~~~~-~~~~IVe~LIeny~~IF~e~~~s~~~l----  445 (804)
                      +.|.+| .|++ |-..+.|.++.. |++.++...+    ++.|...++ .+|.+|..+++.|..||.++.++....    
T Consensus       526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s  605 (1100)
T KOG4271|consen  526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS  605 (1100)
T ss_pred             HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence            999999 6777 667889999987 9999999988    777777777 599999999999999999875554211    


Q ss_pred             --------ccccccCCCCCCCCCCCCCc-CCCCCCCCCCCCCCCCCCCcccccCCCCccCCCCCCCccccccccCCCccc
Q 003668          446 --------YSESELSGSGTEEATDDDES-YEDDDQDGATPESDAYTDDDLDNASSRSCSESGESGDSVVYKDKKNIAPFL  516 (804)
Q Consensus       446 --------~~ds~~~~~~sees~d~d~~-~~d~~y~s~e~e~~~d~d~d~e~~~~g~~s~~~~~~~~~~~~~~~~~~~~~  516 (804)
                              +..+...++.-..-.|..+- .+++.|+..+|.          ........+......+| +|.|.+   ++
T Consensus       606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~----------~~a~~~tee~~~~Sp~~-s~~~~~---~~  671 (1100)
T KOG4271|consen  606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNA----------AEACSTTEEVFNFSPRD-SSPYCN---SN  671 (1100)
T ss_pred             ccccccccCCCchhccccccccccccchhhccccccCCccc----------cccccCchhhcCCChhh-cccccC---CC
Confidence                    22222222222221111111 111222222221          11122223333444455 777777   66


Q ss_pred             ccccccccCCCCCCCCCCCCCcccCCCCCCCcccccCCcccccccccccccccCCCcccccccccccccccCCCCCcccc
Q 003668          517 YYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAELLVDVSSGTSSEFK  596 (804)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (804)
                      .+|+|       .++|..-..+.+.+.+++.|..-+...++.+.+.+++..      .+...++...+..|  .++..++
T Consensus       672 ~~d~d-------~ds~p~~Sp~~e~t~lsst~k~~S~~~~d~g~~~~~i~~------~~~n~~~~r~i~~V--s~pi~Pk  736 (1100)
T KOG4271|consen  672 LQDSD-------EDSPPSYSPFREDTSLSSTSKDHSKLSMDLGGNDVGISF------TMNNFESKRNINKV--SPPIKPK  736 (1100)
T ss_pred             ccccC-------CCCCCCcCCccCcccccCCccccccccccccCCCCCccc------ccchhHhhhhcccC--CCCCCCC
Confidence            77777       233333333455567888887777777877766555411      11122333322222  2333344


Q ss_pred             cCCCCCccccccC-CCCCCCCcCCCCCccccccccccccCCCcCCCCCCchhhhhhh-----hhcchHHHHHHHHHhhhc
Q 003668          597 LNCQSPKSCLEKS-SPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQR-----LEDTKSDLQRKIADEVKG  670 (804)
Q Consensus       597 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  670 (804)
                      .-.+.....+.|+ ..-+..+..+++|...|||+.+.|++.+|++|.+++|++.|||     ++.+|-|+|+||+||+|+
T Consensus       737 ~vs~dvt~~a~kp~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~  816 (1100)
T KOG4271|consen  737 AVSPDVTFDATKPDLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKN  816 (1100)
T ss_pred             cCCCCcccccccCcccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhc
Confidence            4455666667777 4445577778899999999999999999999999999999999     999999999999999999


Q ss_pred             chhHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHhh--hcCCCCCCCCCCCCChhhHHHHhhhhhhhhH
Q 003668          671 NEILEASLESRKKALHERRLALE-NDVARLKDQLQKERDKRTAMEAG--LGEFNGSFPIPDTIDEKTKVELGEIAQAETD  747 (804)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~r~~le-~~v~~l~~~l~~e~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~  747 (804)
                      |+.||||+||||+++++||.+|| +++.|||+++|+|+..|.+...|  +..+.|+. +..-.|+|+++.|+.+..+|.|
T Consensus       817 ~~~~QaSder~nks~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~-d~~~~~sktskkl~k~k~a~hD  895 (1100)
T KOG4271|consen  817 NNKLQASDERRNKSDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGS-DLSAGPSKTSKKLEKNKLAKHD  895 (1100)
T ss_pred             chhhhhhhhhcccccccccccccHhhhhhhhhccccchhHHHHHHhccCcccccccc-ccccCcccchHHHhhhcccccc
Confidence            99999999999999999999999 99999999999999999999998  77777755 6677899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHhhhccCCCCCCccccccccccccc
Q 003668          748 IINLKQKAKDLRVQLS--EQLEKNDGFVGDSSNQLHQTSTKLYA  789 (804)
Q Consensus       748 ~~~l~~~~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (804)
                       ++|++|+.+.+.+.+  ++++++..++.|+...++.+++|+.+
T Consensus       896 -a~lktk~~n~pa~~stt~~s~~~~~~l~~~~t~~k~ip~~~ek  938 (1100)
T KOG4271|consen  896 -AKLKTKTKNTPARRSTTWESNYFLTPLQDAVTSEKPIPIFLEK  938 (1100)
T ss_pred             -ccccccccCCcccccchhhhhccCCcccccccCCcccchHHHH
Confidence             999999999999999  99999999999999999999988654

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=100.00  E-value=1.3e-39  Score=331.71  Aligned_cols=188  Identities=20%  Similarity=0.388  Sum_probs=167.5

Q ss_pred             cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcC-C-CCCC--CCCChhhhHHHHHH
Q 003668          230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-K-TEFS--PEEDAHIIADCVKY  304 (804)
Q Consensus       230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~-~~~~--~~~d~h~vAslLK~  304 (804)
                      ||+||+.++++ +..||.+|.+|++||+++|+.+|||||++|+..+|+++++.+|++ . .++.  ...|+|+||++||.
T Consensus         1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~   80 (194)
T cd04372           1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL   80 (194)
T ss_pred             CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence            99999999987 456999999999999999999999999999999999999999974 3 2332  23489999999999


Q ss_pred             HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcc
Q 003668          305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP  383 (804)
Q Consensus       305 fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgP  383 (804)
                      |||+||+||||.++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.+++.||||+.|||+||||
T Consensus        81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P  159 (194)
T cd04372          81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALM-LLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP  159 (194)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence            99999999999999999999998887 889999999886 9999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003668          384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF  435 (804)
Q Consensus       384 tLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF  435 (804)
                      +|||++..      +        .   +..+......+.+|++||+||+.||
T Consensus       160 ~Ll~~~~~------~--------~---~~~~~~~~~~~~iv~~LI~~~~~iF  194 (194)
T cd04372         160 TLMRPPED------S--------A---LTTLNDMRYQILIVQLLITNEDVLF  194 (194)
T ss_pred             ccCCCCCc------c--------H---HHHHHhHHHHHHHHHHHHHhhHhhC
Confidence            99999731      1        0   2233445667889999999999998

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=100.00  E-value=2.8e-39  Score=331.50  Aligned_cols=196  Identities=24%  Similarity=0.332  Sum_probs=173.7

Q ss_pred             CCccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCC---CCCCChhhhHHHH
Q 003668          227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPEEDAHIIADCV  302 (804)
Q Consensus       227 ~~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~d~h~vAslL  302 (804)
                      +++||+||+.++.+ +..||.+|.+|+.||+++|+.+|||||++|+..+++++++.+|.|....   ....|+|+||++|
T Consensus         2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l   81 (203)
T cd04386           2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL   81 (203)
T ss_pred             CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence            57999999988875 5679999999999999999999999999999999999999999996432   2346999999999


Q ss_pred             HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668          303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM  381 (804)
Q Consensus       303 K~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F  381 (804)
                      |.|||+||+||+|.++|+.|+.+.+..+ ..|+..++.+|. +||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus        82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f  160 (203)
T cd04386          82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILN-KLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL  160 (203)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence            9999999999999999999999998877 789999999886 99999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 003668          382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG  438 (804)
Q Consensus       382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~  438 (804)
                      ||+|||++..      +        +. .+.+.....+.+.+|++||+||+.||+++
T Consensus       161 aP~ll~~~~~------~--------~~-~~~~~~~~~~~~~iv~~LI~~~~~iF~~~  202 (203)
T cd04386         161 APNLLWAKNE------G--------SL-AEMAAGTSVHVVAIVELIISHADWFFPGE  202 (203)
T ss_pred             ccccCCCCCC------C--------hh-hhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence            9999999731      1        01 11223345678999999999999999975

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=100.00  E-value=4.4e-39  Score=327.35  Aligned_cols=190  Identities=21%  Similarity=0.399  Sum_probs=173.6

Q ss_pred             ccccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHhh
Q 003668          229 VIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRE  308 (804)
Q Consensus       229 vFGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~fLRe  308 (804)
                      +||+||+.++. +..||.+|.+|+.||+++|+.+|||||++|+..+++++++.+|+|.......+|+|+||++||+|||+
T Consensus         1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre   79 (192)
T cd04402           1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN   79 (192)
T ss_pred             CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence            69999999888 67899999999999999999999999999999999999999999976555678999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccC
Q 003668          309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR  387 (804)
Q Consensus       309 LPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlr  387 (804)
                      ||+||+|.+.|+.|+.+++..+ ..++..++.++. +||..|+.+|+||+.||++|+.+++.|+||++|||+||||+|||
T Consensus        80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~  158 (192)
T cd04402          80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLD-KLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW  158 (192)
T ss_pred             CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence            9999999999999999998877 889999999886 99999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 003668          388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG  438 (804)
Q Consensus       388 p~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~  438 (804)
                      ++...                  .........++.+|++||+||+.||+++
T Consensus       159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~  191 (192)
T cd04402         159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGED  191 (192)
T ss_pred             CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCC
Confidence            97311                  0123345678899999999999999875

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=100.00  E-value=6.2e-39  Score=327.93  Aligned_cols=190  Identities=23%  Similarity=0.420  Sum_probs=167.7

Q ss_pred             CccccchhHhhhcC-----CCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHH
Q 003668          228 PVIGRPILLALEDV-----DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADC  301 (804)
Q Consensus       228 ~vFGvpLe~ll~~~-----~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAsl  301 (804)
                      .|||+||++++...     ..||.+|.+|++||+++|+.+|||||++|+..+++++++.+|.|.. .+....|+|+||++
T Consensus         1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l   80 (199)
T cd04390           1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL   80 (199)
T ss_pred             CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence            48999999888542     3499999999999999999999999999999999999999999964 34456899999999


Q ss_pred             HHHHHhhCCCCCCChhhHHHHHHHHhcCc---hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 003668          302 VKYVIRELPSSPVPASCCNALLEARRTDR---GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA  378 (804)
Q Consensus       302 LK~fLReLPePLlp~~l~~~~l~a~~~~~---~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLA  378 (804)
                      ||.|||+||+||+|.++|+.|+.+.+..+   ..++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||
T Consensus        81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA  159 (199)
T cd04390          81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVS-ILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA  159 (199)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence            99999999999999999999999877543   677889999885 99999999999999999999999999999999999


Q ss_pred             hhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003668          379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF  435 (804)
Q Consensus       379 v~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF  435 (804)
                      +||||+|||++.      ++        .   ..++......+.+|++||+||++||
T Consensus       160 ivf~P~llr~~~------~~--------~---~~~~~~~~~~~~~~~~lI~~~~~~F  199 (199)
T cd04390         160 TVFGPNILRPKV------ED--------P---ATIMEGTPQIQQLMTVMISKHEPLF  199 (199)
T ss_pred             HHhccccCCCCC------CC--------H---HHHHhccHHHHHHHHHHHHhhhhcC
Confidence            999999999973      22        1   2234455677889999999999998

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=100.00  E-value=1.6e-38  Score=328.97  Aligned_cols=197  Identities=26%  Similarity=0.339  Sum_probs=172.9

Q ss_pred             ccccchhHhhhc------CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC---CCCCCCChhhhH
Q 003668          229 VIGRPILLALED------VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT---EFSPEEDAHIIA  299 (804)
Q Consensus       229 vFGvpLe~ll~~------~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~~~~~d~h~vA  299 (804)
                      |||+||+.++.+      +..||.+|.+|++||+++|+.+|||||++|+..+|+++++.++.+..   ......|+|+||
T Consensus         1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va   80 (216)
T cd04391           1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA   80 (216)
T ss_pred             CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence            799999999976      34699999999999999999999999999999999999999998631   223457999999


Q ss_pred             HHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 003668          300 DCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA  378 (804)
Q Consensus       300 slLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLA  378 (804)
                      ++||.|||+||+||||.++|+.|+.+.+..+ ..++.+++.++. +||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus        81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA  159 (216)
T cd04391          81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVL-LLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA  159 (216)
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence            9999999999999999999999999988877 788999999885 99999999999999999999999999999999999


Q ss_pred             hhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668          379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE  437 (804)
Q Consensus       379 v~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e  437 (804)
                      +||||+||++.....           .+...+.+.+..+..++.||++||+|++.||..
T Consensus       160 ivfaP~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~  207 (216)
T cd04391         160 MIMAPNLFPPRGKHS-----------KDNESLQEEVNMAAGCANIMRLLIRYQDLLWTV  207 (216)
T ss_pred             HHhccccCCCCCCCC-----------CcchhHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence            999999999873211           111233455667778899999999999999973

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=100.00  E-value=1.8e-38  Score=323.64  Aligned_cols=189  Identities=22%  Similarity=0.327  Sum_probs=165.4

Q ss_pred             CccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CC---CCCChhhhHHHH
Q 003668          228 PVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FS---PEEDAHIIADCV  302 (804)
Q Consensus       228 ~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~---~~~d~h~vAslL  302 (804)
                      ++||+||+.++.+ +..||.+|.+|++||+++|+ +|||||++|+..+++++++.+|+|... +.   ...|+|+||++|
T Consensus         1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL   79 (195)
T cd04384           1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC   79 (195)
T ss_pred             CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence            4899999988865 56899999999999999999 699999999999999999999998532 21   346999999999


Q ss_pred             HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668          303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM  381 (804)
Q Consensus       303 K~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F  381 (804)
                      |.|||+||+||||+++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus        80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf  158 (195)
T cd04384          80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQ-QLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW  158 (195)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence            9999999999999999999999998877 899999999886 99999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      ||+|||++...     + ..+      +-.++.+....++.||++||+|
T Consensus       159 ~P~L~~~~~~~-----~-~~~------~~~~~~~~~~~q~~v~~~~~~~  195 (195)
T cd04384         159 APNLLRSKQIE-----S-ACF------SGTAAFMEVRIQSVVVEFILNH  195 (195)
T ss_pred             hhhcCCCCccc-----c-ccc------hHHHHHHHHhhhhhheehhhcC
Confidence            99999997311     1 001      1134566677788899999986

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=100.00  E-value=3.9e-38  Score=326.72  Aligned_cols=206  Identities=21%  Similarity=0.352  Sum_probs=172.1

Q ss_pred             CCccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCChhhhHHHHHH
Q 003668          227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKY  304 (804)
Q Consensus       227 ~~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~  304 (804)
                      +.|||+||+.++++ +..||.+|.+|+.||+.+|+++|||||++|+..+|++|++.++.+. .......++|+||++||.
T Consensus         2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~   81 (220)
T cd04375           2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ   81 (220)
T ss_pred             CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence            46999999988875 5679999999999999999999999999999999999999999863 334456799999999999


Q ss_pred             HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcc
Q 003668          305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP  383 (804)
Q Consensus       305 fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgP  383 (804)
                      |||+||+||||+++|+.|+.+.+..+ ++++.+++.++. +||+.|+.+|++|+.||++|+.|++.|+||+.|||+||||
T Consensus        82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP  160 (220)
T cd04375          82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAIL-LLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP  160 (220)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence            99999999999999999999987766 889999999886 9999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCcccccc---cc--ccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668          384 LLLRPLLAGECEIET---DF--NVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG  436 (804)
Q Consensus       384 tLlrp~~~~~~~~e~---d~--~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~  436 (804)
                      +||++.......+..   -+  ...|...   ...+.....+..+|.+||+||+.||.
T Consensus       161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~  215 (220)
T cd04375         161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFM  215 (220)
T ss_pred             hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999986321100000   00  0011111   11234455678899999999999996

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=100.00  E-value=2.9e-38  Score=319.85  Aligned_cols=184  Identities=24%  Similarity=0.326  Sum_probs=165.3

Q ss_pred             cccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHhh
Q 003668          230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRE  308 (804)
Q Consensus       230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLRe  308 (804)
                      ||+||+.++.++..||.+|.+|++||+++|+.+|||||++|+..+++++++.++.|.. .....+|+|+||++||.|||+
T Consensus         1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe   80 (186)
T cd04407           1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE   80 (186)
T ss_pred             CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence            9999999988888999999999999999999999999999999999999999998742 334567999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccC
Q 003668          309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR  387 (804)
Q Consensus       309 LPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlr  387 (804)
                      ||+||||+++|+.|+.+.+..+ .+++.+++.+|. +||+.|+.+|++|+.||++|+.+++.|+||+.|||+||||+|||
T Consensus        81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~  159 (186)
T cd04407          81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLE-QLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR  159 (186)
T ss_pred             CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence            9999999999999999988877 789999999885 99999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       388 p~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      ++..     .+        .   +..+....+.+.+|++||+.
T Consensus       160 ~~~~-----~d--------~---~~~~~~~~~~~~~v~~li~~  186 (186)
T cd04407         160 CPDS-----SD--------P---LTSMKDVAKTTTCVEMLIKE  186 (186)
T ss_pred             CCCC-----CC--------H---HHHHHhhhhhHHHHHHHhhC
Confidence            8631     11        1   23445677888999999973

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=100.00  E-value=2.4e-38  Score=319.42  Aligned_cols=175  Identities=21%  Similarity=0.371  Sum_probs=163.0

Q ss_pred             cccchhHhhhcC-----CCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHH
Q 003668          230 IGRPILLALEDV-----DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY  304 (804)
Q Consensus       230 FGvpLe~ll~~~-----~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~  304 (804)
                      ||+||+.++++.     ..||.+|.+|++||+++|+++|||||++|+..+|+++++.+++|.......+|+|+||++||.
T Consensus         1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~   80 (182)
T cd04381           1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ   80 (182)
T ss_pred             CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence            999999988763     359999999999999999999999999999999999999999987655557899999999999


Q ss_pred             HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcc
Q 003668          305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP  383 (804)
Q Consensus       305 fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgP  383 (804)
                      |||+||+||||.++|+.|+.++...+ .+|+..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||
T Consensus        81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP  159 (182)
T cd04381          81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLK-ELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP  159 (182)
T ss_pred             HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence            99999999999999999999988877 889999999886 9999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668          384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE  437 (804)
Q Consensus       384 tLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e  437 (804)
                      +|+.+.                                .++..||+||+.||++
T Consensus       160 ~l~~~~--------------------------------~~~~~li~~~~~if~~  181 (182)
T cd04381         160 TVQISN--------------------------------RLLYALLTHCQELFGN  181 (182)
T ss_pred             cccCcH--------------------------------HHHHHHHHHHHHHcCC
Confidence            997653                                4899999999999985

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=100.00  E-value=5e-38  Score=318.35  Aligned_cols=182  Identities=28%  Similarity=0.412  Sum_probs=162.7

Q ss_pred             cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CC--CCCCChhhhHHHHHHH
Q 003668          230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EF--SPEEDAHIIADCVKYV  305 (804)
Q Consensus       230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~--~~~~d~h~vAslLK~f  305 (804)
                      ||+||+.++++ +..||.+|.+|++||+.+|+++|||||++|+...+++++..+|.|.. ++  ....|+|+||++||.|
T Consensus         1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f   80 (187)
T cd04403           1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF   80 (187)
T ss_pred             CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence            99999999876 55799999999999999999999999999999999999999999753 22  2356999999999999


Q ss_pred             HhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhccc
Q 003668          306 IRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPL  384 (804)
Q Consensus       306 LReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPt  384 (804)
                      ||+||+||||+++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.+++.|+||+.|||+||||+
T Consensus        81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~  159 (187)
T cd04403          81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIK-SLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT  159 (187)
T ss_pred             HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence            9999999999999999999999887 899999999886 99999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          385 LLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       385 Llrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      |||++.      ++            ...+.....++.||++||+|
T Consensus       160 ll~~~~------~~------------~~~~~~~~~~~~~ve~l~~~  187 (187)
T cd04403         160 LLRPEQ------ET------------GNIAVHMVYQNQIVELILLE  187 (187)
T ss_pred             ccCCCC------cc------------hHHHHHhHHHHHHHHHHhhC
Confidence            999973      11            11223445788999999985

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=100.00  E-value=4.4e-38  Score=319.05  Aligned_cols=183  Identities=20%  Similarity=0.360  Sum_probs=164.9

Q ss_pred             CccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCC---CCCCChhhhHHHHH
Q 003668          228 PVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPEEDAHIIADCVK  303 (804)
Q Consensus       228 ~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~d~h~vAslLK  303 (804)
                      .+||++|+.++.. +..||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|...+   ....|+|+||++||
T Consensus         1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK   80 (188)
T cd04383           1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK   80 (188)
T ss_pred             CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence            3899999998876 5679999999999999999999999999999999999999999986432   34679999999999


Q ss_pred             HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhc
Q 003668          304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA  382 (804)
Q Consensus       304 ~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~Fg  382 (804)
                      .|||+||+||||.++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|++|++.|+||+.|||+|||
T Consensus        81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~  159 (188)
T cd04383          81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILS-TLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG  159 (188)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence            999999999999999999999999888 889999999886 999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       383 PtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      |+|||.+...                   ..+....++++|++.||.|
T Consensus       160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~  188 (188)
T cd04383         160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH  188 (188)
T ss_pred             ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence            9999987310                   1234567889999999975

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=100.00  E-value=7.8e-38  Score=323.11  Aligned_cols=188  Identities=17%  Similarity=0.296  Sum_probs=164.7

Q ss_pred             cccchhHhhhcCC------------CCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCCh
Q 003668          230 IGRPILLALEDVD------------GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDA  295 (804)
Q Consensus       230 FGvpLe~ll~~~~------------~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d~  295 (804)
                      ||+||+.++++.+            .||.+|.+|+.||+++|+.+|||||++|+..+++++++.++.|...  .....++
T Consensus         1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~   80 (213)
T cd04397           1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP   80 (213)
T ss_pred             CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence            9999999998732            4899999999999999999999999999999999999999997532  2345789


Q ss_pred             hhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcc-----c
Q 003668          296 HIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN-----Q  369 (804)
Q Consensus       296 h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~-----~  369 (804)
                      |+||++||.|||+||+||||.++|+.|+.+.+..+ +.++..++.++. +||+.|+.+|++|+.||+.|+.++.     .
T Consensus        81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~-~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~  159 (213)
T cd04397          81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYC-LLPKYHRDTMEVLFSFLKWVSSFSHIDEETG  159 (213)
T ss_pred             HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence            99999999999999999999999999999998888 788888888775 9999999999999999999998775     5


Q ss_pred             CCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668          370 NRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG  436 (804)
Q Consensus       370 NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~  436 (804)
                      |+||+.|||+||||+|||++...                  ...+......+.+|++||+||+.||.
T Consensus       160 NkM~~~NLAivf~P~Ll~~~~~~------------------~~~~~~~~~~~~vv~~LI~n~~~if~  208 (213)
T cd04397         160 SKMDIHNLATVITPNILYSKTDN------------------PNTGDEYFLAIEAVNYLIENNEEFCE  208 (213)
T ss_pred             CcCChHHhHHhhcccccCCCCCC------------------cchHHHHHHHHHHHHHHHHhHHHHhc
Confidence            99999999999999999997311                  01112334567899999999999997

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=100.00  E-value=1.1e-37  Score=318.04  Aligned_cols=189  Identities=21%  Similarity=0.342  Sum_probs=168.1

Q ss_pred             ccccchhHhhhc--CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCC----CCCCChhhhHHHH
Q 003668          229 VIGRPILLALED--VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF----SPEEDAHIIADCV  302 (804)
Q Consensus       229 vFGvpLe~ll~~--~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~----~~~~d~h~vAslL  302 (804)
                      +||+||+..+..  +..||.+|.+|+.+|+.+|+++|||||++|+..+++++++.+|+|....    ....|+|+||++|
T Consensus         1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll   80 (196)
T cd04395           1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL   80 (196)
T ss_pred             CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence            599999987654  3579999999999999999999999999999999999999999986432    2346899999999


Q ss_pred             HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668          303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM  381 (804)
Q Consensus       303 K~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F  381 (804)
                      |.|||+||+||||.++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|.||+.||++|+.|++.|+|++.|||+||
T Consensus        81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f  159 (196)
T cd04395          81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIH-SLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF  159 (196)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence            9999999999999999999999988888 899999999886 99999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003668          382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF  435 (804)
Q Consensus       382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF  435 (804)
                      ||+|+|++..      +           +..........+.+|+.||+||++||
T Consensus       160 aP~l~r~~~~------~-----------~~~~~~~~~~~~~ii~~LI~~~d~~f  196 (196)
T cd04395         160 GPTLVRTSDD------N-----------METMVTHMPDQCKIVETLIQHYDWFF  196 (196)
T ss_pred             ccccCCCCCC------C-----------HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence            9999999731      1           11233345667899999999999998

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=100.00  E-value=8.7e-38  Score=318.42  Aligned_cols=190  Identities=24%  Similarity=0.391  Sum_probs=169.0

Q ss_pred             CCCccccchhHhhhcC---CCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCC-CChhhhHHH
Q 003668          226 KFPVIGRPILLALEDV---DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPE-EDAHIIADC  301 (804)
Q Consensus       226 k~~vFGvpLe~ll~~~---~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~-~d~h~vAsl  301 (804)
                      ++.+||+||+.++.+.   ..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|....... .|+|+||++
T Consensus         2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~   81 (195)
T cd04404           2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI   81 (195)
T ss_pred             CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence            5789999999988763   579999999999999999999999999999999999999999986433333 499999999


Q ss_pred             HHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668          302 VKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM  381 (804)
Q Consensus       302 LK~fLReLPePLlp~~l~~~~l~a~~~~~~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F  381 (804)
                      ||.|||+||+||+|.++|+.|+.+.+.+...++..++.++. +||+.|+.+|.+|+.||++|+.|++.|+|++.|||+||
T Consensus        82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~-~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vf  160 (195)
T cd04404          82 LKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQ-TLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVF  160 (195)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheee
Confidence            99999999999999999999999876655778899999886 89999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003668          382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF  435 (804)
Q Consensus       382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF  435 (804)
                      ||+|||++..       .            ........++.+|++||+||+.||
T Consensus       161 aP~l~~~~~~-------~------------~~l~~~~~~~~~~~~LI~~~~~iF  195 (195)
T cd04404         161 GPNLLWAKDA-------S------------MSLSAINPINTFTKFLLDHQDEIF  195 (195)
T ss_pred             eccccCCCCc-------c------------cCHHHHHHHHHHHHHHHHhHHhhC
Confidence            9999998731       0            012345677889999999999998

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=100.00  E-value=1.9e-37  Score=317.70  Aligned_cols=191  Identities=23%  Similarity=0.296  Sum_probs=165.4

Q ss_pred             ccccchhHhhhc----CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHH
Q 003668          229 VIGRPILLALED----VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY  304 (804)
Q Consensus       229 vFGvpLe~ll~~----~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~  304 (804)
                      |||+||+.++..    +..||.+|.+|+.||++ |+++|||||++|+..+++++++.+|+|.... ...++|+||++||.
T Consensus         1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~   78 (202)
T cd04394           1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ   78 (202)
T ss_pred             CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence            799999988753    56799999999999986 6999999999999999999999999987543 35689999999999


Q ss_pred             HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcc
Q 003668          305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP  383 (804)
Q Consensus       305 fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgP  383 (804)
                      |||+||+||+|+++|+.|+.+.+..+ .+++.+++.++. +||..|+.+|+||+.||++|+.|++.|+||+.|||+||||
T Consensus        79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP  157 (202)
T cd04394          79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTC-LLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP  157 (202)
T ss_pred             HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence            99999999999999999999988877 788888888775 9999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668          384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG  436 (804)
Q Consensus       384 tLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~  436 (804)
                      +|||+...       ...|..       .+......++.+|++||+||+.||.
T Consensus       158 ~L~~~~~~-------~~~~s~-------~~~~~~~~~~~vv~~lI~~~~~i~~  196 (202)
T cd04394         158 NLFQSEEG-------GEKMSS-------STEKRLRLQAAVVQTLIDNASNIGI  196 (202)
T ss_pred             eeecCCCc-------ccccch-------hHHHhHHHHHHHHHHHHHHHHHHcc
Confidence            99998731       111110       1112345578899999999999996

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=100.00  E-value=1.7e-37  Score=317.58  Aligned_cols=185  Identities=21%  Similarity=0.328  Sum_probs=162.9

Q ss_pred             cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHh
Q 003668          230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIR  307 (804)
Q Consensus       230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLR  307 (804)
                      ||+||+.++++ ++.||.+|.+|++||+++|+.+|||||++|+..++++|++.+++|.. ......++|+||++||.|||
T Consensus         1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR   80 (200)
T cd04408           1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK   80 (200)
T ss_pred             CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence            99999988876 67899999999999999999999999999999999999999999863 23346799999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcC------------c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCc
Q 003668          308 ELPSSPVPASCCNALLEARRTD------------R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST  374 (804)
Q Consensus       308 eLPePLlp~~l~~~~l~a~~~~------------~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~  374 (804)
                      +||+||||+++|+.|+.+.+..            . .+++..++.+|. +||+.|+.+|+||+.||++|+.+++.|+|++
T Consensus        81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~  159 (200)
T cd04408          81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLG-RLPVSNYNTLRHLMAHLYRVAERFEDNKMSP  159 (200)
T ss_pred             hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence            9999999999999999987531            1 468999999886 9999999999999999999999999999999


Q ss_pred             chhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          375 SAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       375 ~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      .|||+||||+|||++...      +.         .+.++....+.+.+|++||+|
T Consensus       160 ~NLAivf~P~Ll~~~~~~------~~---------~~~~~~~~~~q~~~ve~li~~  200 (200)
T cd04408         160 NNLGIVFGPTLLRPLVGG------DV---------SMICLLDTGYQAQLVEFLISN  200 (200)
T ss_pred             hHhhhhhccccCCCCCCC------ch---------HHHHHhccchHHHHHHHHhhC
Confidence            999999999999997311      11         134455667888999999986

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=100.00  E-value=1.9e-37  Score=313.91  Aligned_cols=183  Identities=22%  Similarity=0.326  Sum_probs=164.4

Q ss_pred             cccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCChhhhHHHHHHHHhh
Q 003668          230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVIRE  308 (804)
Q Consensus       230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~fLRe  308 (804)
                      ||+||+.++.++..||.+|.+|++||+.+|+.+|||||++|+..+|+++++.+|.+. ......+|+|+||++||.|||+
T Consensus         1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe   80 (186)
T cd04406           1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD   80 (186)
T ss_pred             CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence            999999888878899999999999999999999999999999999999999999874 2334567999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccC
Q 003668          309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR  387 (804)
Q Consensus       309 LPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlr  387 (804)
                      ||+||||+++|+.|+.+....+ .+++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+||+.|||+||||+|||
T Consensus        81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~-~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~  159 (186)
T cd04406          81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVID-QLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR  159 (186)
T ss_pred             CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence            9999999999999999998877 889999999885 99999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 003668          388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLE  429 (804)
Q Consensus       388 p~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIe  429 (804)
                      ++..     .        ++   +..++...+...+|++||-
T Consensus       160 ~p~~-----~--------d~---~~~~~~~~~~~~~~~~~~~  185 (186)
T cd04406         160 CPDT-----T--------DP---LQSVQDISKTTTCVELIVC  185 (186)
T ss_pred             CCCC-----C--------CH---HHHHHHHhhccchhhhhcc
Confidence            8731     1        11   3455667788889999874

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=100.00  E-value=3.7e-37  Score=312.93  Aligned_cols=184  Identities=25%  Similarity=0.398  Sum_probs=165.0

Q ss_pred             cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC--CCC----CCCChhhhHHHH
Q 003668          230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT--EFS----PEEDAHIIADCV  302 (804)
Q Consensus       230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~~----~~~d~h~vAslL  302 (804)
                      ||+||+.++.. +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|..  ...    ...|+|+||++|
T Consensus         1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L   80 (192)
T cd04398           1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL   80 (192)
T ss_pred             CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence            99999998875 56799999999999999999999999999999999999999999852  211    245999999999


Q ss_pred             HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668          303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM  381 (804)
Q Consensus       303 K~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F  381 (804)
                      |.|||+||+||+|.++|+.|+.+.+..+ ..++..++.++. +||..|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus        81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf  159 (192)
T cd04398          81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLIN-DLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW  159 (192)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence            9999999999999999999999998887 889999999886 99999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003668          382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF  435 (804)
Q Consensus       382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF  435 (804)
                      ||+|||++..      +               +......+.++++||+||+.||
T Consensus       160 ~P~l~~~~~~------~---------------~~~~~~~~~~~~~LI~~~~~iF  192 (192)
T cd04398         160 GPTLMNAAPD------N---------------AADMSFQSRVIETLLDNAYQIF  192 (192)
T ss_pred             hhhhCCCCcc------c---------------hhhHHHHHHHHHHHHHHHHHhC
Confidence            9999998731      0               1223456789999999999998

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=100.00  E-value=5.1e-37  Score=315.38  Aligned_cols=186  Identities=23%  Similarity=0.394  Sum_probs=162.1

Q ss_pred             CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHhhCCCCCCChhhH
Q 003668          241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRELPSSPVPASCC  319 (804)
Q Consensus       241 ~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLReLPePLlp~~l~  319 (804)
                      +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|.|.. .+....|+|+||++||.|||+||+||+|+++|
T Consensus         6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y   85 (206)
T cd04376           6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY   85 (206)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence            45799999999999999999999999999999999999999999863 44556799999999999999999999999999


Q ss_pred             HHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcc-----------cCCCCcchhhhhhcccccCC
Q 003668          320 NALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN-----------QNRMSTSAVAACMAPLLLRP  388 (804)
Q Consensus       320 ~~~l~a~~~~~~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~-----------~NkMt~~NLAv~FgPtLlrp  388 (804)
                      +.|+.+.....++++..++.+|. +||+.|+.+|+||+.||++|+.|++           .|+||+.|||+||||+|||+
T Consensus        86 ~~~i~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~  164 (206)
T cd04376          86 TAFIGTALLEPDEQLEALQLLIY-LLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHK  164 (206)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCC
Confidence            99999988766788999999886 9999999999999999999999986           79999999999999999999


Q ss_pred             CCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 003668          389 LLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG  438 (804)
Q Consensus       389 ~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~  438 (804)
                      +..+..+.++           ....+......+.||++||+||+.||...
T Consensus       165 ~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~  203 (206)
T cd04376         165 QKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVS  203 (206)
T ss_pred             CCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCC
Confidence            8432221111           12334455677889999999999999743

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=100.00  E-value=6.8e-37  Score=309.65  Aligned_cols=160  Identities=26%  Similarity=0.485  Sum_probs=150.3

Q ss_pred             cccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CC-CCCCChhhhHHHHHHHHh
Q 003668          230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EF-SPEEDAHIIADCVKYVIR  307 (804)
Q Consensus       230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~-~~~~d~h~vAslLK~fLR  307 (804)
                      ||+||+.++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.++.|.. ++ ..+.|+|+||++||+|||
T Consensus         1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr   80 (185)
T cd04373           1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS   80 (185)
T ss_pred             CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence            9999999998888999999999999999999999999999999999999999999753 33 235689999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhccccc
Q 003668          308 ELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL  386 (804)
Q Consensus       308 eLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLl  386 (804)
                      +||+||+|+++|+.|+++.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus        81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~  159 (185)
T cd04373          81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELLK-KFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM  159 (185)
T ss_pred             cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence            99999999999999999998877 889999999886 9999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 003668          387 RPLL  390 (804)
Q Consensus       387 rp~~  390 (804)
                      ||+.
T Consensus       160 ~~~~  163 (185)
T cd04373         160 RPDF  163 (185)
T ss_pred             CCCC
Confidence            9873

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=100.00  E-value=5.7e-37  Score=319.16  Aligned_cols=187  Identities=22%  Similarity=0.287  Sum_probs=160.6

Q ss_pred             ccccchhHhhhcC----------------CCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC----CC
Q 003668          229 VIGRPILLALEDV----------------DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK----TE  288 (804)
Q Consensus       229 vFGvpLe~ll~~~----------------~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~----~~  288 (804)
                      ||||+|+..+...                ..||.+|.+|+.||+++|+++|||||++|+..++++|++.|+.+.    ..
T Consensus         1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~   80 (225)
T cd04396           1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF   80 (225)
T ss_pred             CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence            7999999877542                258999999999999999999999999999999999999999863    22


Q ss_pred             CCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhc-----------------Cc-hHHHHHHHHHHHhcCChhHH
Q 003668          289 FSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRT-----------------DR-GSRVSAMRTAILETFPEPNR  350 (804)
Q Consensus       289 ~~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~-----------------~~-~~ri~~i~~lI~~~LP~~Nr  350 (804)
                      ....+++|+||++||.|||+||+||||+++|+.|+.++..                 .+ .+++..++.+|. +||+.|+
T Consensus        81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~-~LP~~n~  159 (225)
T cd04396          81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLIT-RLPNLNR  159 (225)
T ss_pred             CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHH-HCCHHHH
Confidence            2356799999999999999999999999999999987642                 23 688999999886 9999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          351 KLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       351 ~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      .+|+||+.||++|++|++.||||+.|||+||||+||+++.       .+  |         . .......+.+|++||+|
T Consensus       160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~-------~~--~---------~-~~~~~~~~~~ve~lI~~  220 (225)
T cd04396         160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPD-------HE--M---------D-PKEYKLSRLVVEFLIEH  220 (225)
T ss_pred             HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCc-------cc--c---------C-HHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999872       11  1         0 11234567899999999


Q ss_pred             ccccc
Q 003668          431 YDKIF  435 (804)
Q Consensus       431 y~~IF  435 (804)
                      ++++.
T Consensus       221 ~~~~~  225 (225)
T cd04396         221 QDKFL  225 (225)
T ss_pred             HHhhC
Confidence            99873

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=7.5e-37  Score=313.61  Aligned_cols=186  Identities=22%  Similarity=0.325  Sum_probs=162.2

Q ss_pred             cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHh
Q 003668          230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIR  307 (804)
Q Consensus       230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLR  307 (804)
                      ||+||+.++.+ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.+++|.. ......++|+||++||.|||
T Consensus         1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR   80 (203)
T cd04378           1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR   80 (203)
T ss_pred             CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence            99999998876 67899999999999999999999999999999999999999999863 23446799999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcC--------------c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCC
Q 003668          308 ELPSSPVPASCCNALLEARRTD--------------R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRM  372 (804)
Q Consensus       308 eLPePLlp~~l~~~~l~a~~~~--------------~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkM  372 (804)
                      +||+||||+++|+.|+.+++..              + ..++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+|
T Consensus        81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM  159 (203)
T cd04378          81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLR-QLPASNYNTLQHLIAHLYRVAEQFEENKM  159 (203)
T ss_pred             hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999987531              1 357889999886 99999999999999999999999999999


Q ss_pred             CcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          373 STSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       373 t~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      ++.|||+||||+|||++...     .+        . .+.+.....+++.||++||.|
T Consensus       160 ~~~NLaivf~P~Ll~~~~~~-----~~--------~-~~~~l~~~~~q~~~ve~li~~  203 (203)
T cd04378         160 SPNNLGIVFGPTLIRPRPGD-----AD--------V-SLSSLVDYGYQARLVEFLITN  203 (203)
T ss_pred             CHHHhhhhhccccCCCCCCC-----cc--------h-hHHHHHhhhhhHHHHHHHhhC
Confidence            99999999999999998411     00        0 133445667888999999986

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=100.00  E-value=2e-36  Score=306.51  Aligned_cols=184  Identities=26%  Similarity=0.373  Sum_probs=166.4

Q ss_pred             cccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCChhhhHHHHHHHHhh
Q 003668          230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVIRE  308 (804)
Q Consensus       230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~fLRe  308 (804)
                      ||+||+.++.++..||.+|.+|++||+.+|+++|||||++|+..+++++++.+|+|. ......+++|+||++||+|||+
T Consensus         1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~   80 (186)
T cd04377           1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE   80 (186)
T ss_pred             CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence            999999999888899999999999999999999999999999999999999999984 2234567999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccC
Q 003668          309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR  387 (804)
Q Consensus       309 LPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlr  387 (804)
                      ||+||||+++|+.|+.++...+ .+++..++.+|. +||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||
T Consensus        81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~  159 (186)
T cd04377          81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVLE-QLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR  159 (186)
T ss_pred             CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence            9999999999999999998887 889999999886 99999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       388 p~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      ++..             .+.   ..+.....+...+|++||+.
T Consensus       160 ~~~~-------------~~~---~~~~~d~~~~~~~~e~li~~  186 (186)
T cd04377         160 CPDT-------------ADP---LQSLQDVSKTTTCVETLIKE  186 (186)
T ss_pred             CCCC-------------CCH---HHHHHHHHHHHHHHHHHhhC
Confidence            8731             111   23566778889999999974

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=1.6e-36  Score=312.81  Aligned_cols=186  Identities=24%  Similarity=0.359  Sum_probs=158.8

Q ss_pred             cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHh
Q 003668          230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIR  307 (804)
Q Consensus       230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~d~h~vAslLK~fLR  307 (804)
                      ||+||+.++.+ +++||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|... .....|+|+||++||.|||
T Consensus         1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR   80 (211)
T cd04409           1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR   80 (211)
T ss_pred             CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence            99999988876 568999999999999999999999999999999999999999998632 2346799999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcCc-----------------------hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 003668          308 ELPSSPVPASCCNALLEARRTDR-----------------------GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVA  364 (804)
Q Consensus       308 eLPePLlp~~l~~~~l~a~~~~~-----------------------~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~  364 (804)
                      +||+||||+++|+.|+.+++...                       ..++.+++.+|. +||+.|+.+|+||+.||++|+
T Consensus        81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~  159 (211)
T cd04409          81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLR-QLPAPNYNTLQFLIVHLHRVS  159 (211)
T ss_pred             hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999875210                       123668888886 999999999999999999999


Q ss_pred             hhcccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          365 SSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       365 ~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      +|++.|+||+.|||+||||+||||+..       +..+    +   +..+.....+..||++||.+
T Consensus       160 ~~s~~NkM~~~NLAivf~P~Llrp~~~-------~~~~----~---~~~~~~~~~~~~~ve~li~~  211 (211)
T cd04409         160 EQAEENKMSASNLGIIFGPTLIRPRPT-------DATV----S---LSSLVDYPHQARLVELLITY  211 (211)
T ss_pred             cccccCCCChHHhhhhccccccCCCCC-------Ccch----h---HHHHhhhhhHHHHHHHHhhC
Confidence            999999999999999999999999731       1100    0   22344567788999999974

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=100.00  E-value=1.2e-36  Score=309.07  Aligned_cols=176  Identities=22%  Similarity=0.401  Sum_probs=160.5

Q ss_pred             ccccchhHhhhc------CCCCcHHHHHHHHHHHHcC-CccCCeeecCCCHHHHHHHHHHHhcCCC-CC---CCCCChhh
Q 003668          229 VIGRPILLALED------VDGTPSFLEKAIRFIEEHG-VQVEGILRQAAYVDDVHRRIREFEQGKT-EF---SPEEDAHI  297 (804)
Q Consensus       229 vFGvpLe~ll~~------~~~VP~~l~~~i~~Le~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~---~~~~d~h~  297 (804)
                      |||+||+.++..      +..||.+|.+|++||+++| +.+|||||++|+..+++++++.++.|.. .+   ....|+|+
T Consensus         1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~   80 (190)
T cd04400           1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT   80 (190)
T ss_pred             CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence            799999988865      3479999999999999987 7999999999999999999999999842 22   23579999


Q ss_pred             hHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC-c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcc
Q 003668          298 IADCVKYVIRELPSSPVPASCCNALLEARRTD-R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTS  375 (804)
Q Consensus       298 vAslLK~fLReLPePLlp~~l~~~~l~a~~~~-~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~  375 (804)
                      ||++||.|||+||+||+|.++|+.|+.+.+.. + .+++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus        81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~  159 (190)
T cd04400          81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVS-QLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR  159 (190)
T ss_pred             HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence            99999999999999999999999999988776 5 889999999885 89999999999999999999999999999999


Q ss_pred             hhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668          376 AVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE  437 (804)
Q Consensus       376 NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e  437 (804)
                      |||+||||+|++|.                                .|+..||++|+.||++
T Consensus       160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~  189 (190)
T cd04400         160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG  189 (190)
T ss_pred             HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence            99999999999875                                2899999999999985

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=100.00  E-value=4.2e-36  Score=306.43  Aligned_cols=160  Identities=24%  Similarity=0.361  Sum_probs=148.8

Q ss_pred             cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC---CCCCCChhhhHHHHHHH
Q 003668          230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE---FSPEEDAHIIADCVKYV  305 (804)
Q Consensus       230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~d~h~vAslLK~f  305 (804)
                      ||+||+.++.+ +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|...   .....|+|+||++||.|
T Consensus         1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f   80 (196)
T cd04387           1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY   80 (196)
T ss_pred             CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence            99999988876 446999999999999999999999999999999999999999987432   23467999999999999


Q ss_pred             HhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhccc
Q 003668          306 IRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPL  384 (804)
Q Consensus       306 LReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPt  384 (804)
                      ||+||+||||+++|+.|+.+.+..+ ..++.+++.++. +||+.|+.+|.+|+.||++|+.+++.|+||+.|||+||||+
T Consensus        81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~  159 (196)
T cd04387          81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLL-SLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT  159 (196)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence            9999999999999999999998888 888999999885 99999999999999999999999999999999999999999


Q ss_pred             ccCCCC
Q 003668          385 LLRPLL  390 (804)
Q Consensus       385 Llrp~~  390 (804)
                      |||++.
T Consensus       160 Llr~~~  165 (196)
T cd04387         160 LLRPSE  165 (196)
T ss_pred             cCCCCc
Confidence            999985

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=100.00  E-value=4.1e-36  Score=304.87  Aligned_cols=183  Identities=23%  Similarity=0.400  Sum_probs=163.0

Q ss_pred             CccccchhHhhhc---CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHH
Q 003668          228 PVIGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVK  303 (804)
Q Consensus       228 ~vFGvpLe~ll~~---~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK  303 (804)
                      ++||+||+.++.+   +++||.+|..|++||+++|+.+|||||++|+...++++++.+++|.. .+....|+|++|++||
T Consensus         1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK   80 (189)
T cd04393           1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR   80 (189)
T ss_pred             CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence            4899999998876   45799999999999999999999999999999999999999999964 3445589999999999


Q ss_pred             HHHhhCCCCCCChhhHHHHHHHHhcC-c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668          304 YVIRELPSSPVPASCCNALLEARRTD-R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM  381 (804)
Q Consensus       304 ~fLReLPePLlp~~l~~~~l~a~~~~-~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F  381 (804)
                      +|||+||+||+|.++|+.|+.+++.. + .+++..++.+|. +||+.|+.+|.+|+.||+.|+.|++.|+||+.|||+||
T Consensus        81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~-~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf  159 (189)
T cd04393          81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQ-QLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF  159 (189)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence            99999999999999999999987655 3 778899999885 99999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      ||+|||.+..                   .........++.|++.||+|
T Consensus       160 ~P~l~~~~~~-------------------~~~~~~~~~~~~~~~~li~~  189 (189)
T cd04393         160 GPDVFHVYTD-------------------VEDMKEQEICSRIMAKLLEN  189 (189)
T ss_pred             cCceeCCCCC-------------------cccHHHHHHHHHHHHHHhcC
Confidence            9999998731                   01223456788899999987

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=100.00  E-value=1.1e-35  Score=305.47  Aligned_cols=194  Identities=21%  Similarity=0.294  Sum_probs=159.4

Q ss_pred             cccchhHhhhc---CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC--CCC--CCCChhhhHHHH
Q 003668          230 IGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT--EFS--PEEDAHIIADCV  302 (804)
Q Consensus       230 FGvpLe~ll~~---~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~~--~~~d~h~vAslL  302 (804)
                      ||+||+.++.+   +..||.+|.+|++||+.+|+.+|||||++|+..++++|++.++++..  ++.  ...|+|+||++|
T Consensus         1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL   80 (207)
T cd04379           1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL   80 (207)
T ss_pred             CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence            99999999976   34699999999999999999999999999999999999999998742  222  234899999999


Q ss_pred             HHHHhhCCCCCCChhhHHHHHHHHhcCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 003668          303 KYVIRELPSSPVPASCCNALLEARRTDR----GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA  378 (804)
Q Consensus       303 K~fLReLPePLlp~~l~~~~l~a~~~~~----~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLA  378 (804)
                      |.|||+||+||||+++|+.|+.++....    ..+...++.+|. +||..|+.+|+||+.||+.|+.|++.||||+.|||
T Consensus        81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~-~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA  159 (207)
T cd04379          81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIID-CLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA  159 (207)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence            9999999999999999999999886533    345667888775 99999999999999999999999999999999999


Q ss_pred             hhhcccccCCCCCCccc-cccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 003668          379 ACMAPLLLRPLLAGECE-IETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEY  431 (804)
Q Consensus       379 v~FgPtLlrp~~~~~~~-~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny  431 (804)
                      +||||+||+++...... +.....|....+       ....+...++++||+-|
T Consensus       160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  206 (207)
T cd04379         160 VCFGPVLMFCSQEFSRYGISPTSKMAAVST-------VDFKQHIEVLHYLLQIW  206 (207)
T ss_pred             HhhccccCCCCcccccccCCCCccccccch-------hhHHHHHHHHHHHHHhc
Confidence            99999999998543211 111122222222       23345667899999865

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=100.00  E-value=1.3e-35  Score=305.35  Aligned_cols=183  Identities=24%  Similarity=0.365  Sum_probs=154.7

Q ss_pred             cccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CC-CCCChhhhHHHHHHHHh
Q 003668          230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FS-PEEDAHIIADCVKYVIR  307 (804)
Q Consensus       230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~-~~~d~h~vAslLK~fLR  307 (804)
                      ||.||.+     ++++ +|.+||+||++ |+.+|||||++|+..++++|++.+++|... +. ..+++|+||++||.|||
T Consensus         1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR   73 (208)
T cd04392           1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG   73 (208)
T ss_pred             CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence            7888743     2333 89999999998 999999999999999999999999998643 32 35699999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhc------------Cc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCc
Q 003668          308 ELPSSPVPASCCNALLEARRT------------DR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST  374 (804)
Q Consensus       308 eLPePLlp~~l~~~~l~a~~~------------~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~  374 (804)
                      +||+||||.++|+.|+.+.+.            .+ +.++.+++.++. +||+.|+.+|+||+.||+.|+.|++.|+||+
T Consensus        74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~  152 (208)
T cd04392          74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLL-LLPEENRNLLKLILDLLYQTAKHEDKNKMSA  152 (208)
T ss_pred             hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence            999999999999999887642            23 567888988775 9999999999999999999999999999999


Q ss_pred             chhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668          375 SAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE  437 (804)
Q Consensus       375 ~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e  437 (804)
                      .|||+||||+||||+..      +        ...+   .....+++.||++||+||+.||+.
T Consensus       153 ~NLAivf~P~Ll~~~~~------~--------~~~~---~~~~~~~~~iv~~lI~~~~~iF~~  198 (208)
T cd04392         153 DNLALLFTPHLICPRNL------T--------PEDL---HENAQKLNSIVTFMIKHSQKLFKA  198 (208)
T ss_pred             HHHHHHhCcccCCCCCC------C--------HHHH---HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999998621      1        1111   123456789999999999999974

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=100.00  E-value=2.6e-35  Score=297.88  Aligned_cols=179  Identities=22%  Similarity=0.383  Sum_probs=161.2

Q ss_pred             ccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC---CCCCCChhhhHHHHHHHHh
Q 003668          231 GRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE---FSPEEDAHIIADCVKYVIR  307 (804)
Q Consensus       231 GvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~d~h~vAslLK~fLR  307 (804)
                      |.+|+.....+.+||.+|.+|+.||+.+|+.+|||||++|+..++++|++.++.+...   .....|+|+||++||.|||
T Consensus         2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr   81 (184)
T cd04385           2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR   81 (184)
T ss_pred             CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence            7778777777789999999999999999999999999999999999999999886422   2356799999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhccccc
Q 003668          308 ELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL  386 (804)
Q Consensus       308 eLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLl  386 (804)
                      +||+||||+++|+.|+.+.+..+ ..++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+||
T Consensus        82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll  160 (184)
T cd04385          82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELIR-RLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF  160 (184)
T ss_pred             hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence            99999999999999999998888 899999999886 9999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 003668          387 RPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEY  431 (804)
Q Consensus       387 rp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny  431 (804)
                      |++..                     .........+||+.||+||
T Consensus       161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~  184 (184)
T cd04385         161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY  184 (184)
T ss_pred             CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence            98731                     1123456788999999998

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=100.00  E-value=6.1e-35  Score=297.20  Aligned_cols=177  Identities=22%  Similarity=0.331  Sum_probs=157.0

Q ss_pred             CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHhhCCCCCCChhhH
Q 003668          241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRELPSSPVPASCC  319 (804)
Q Consensus       241 ~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLReLPePLlp~~l~  319 (804)
                      ...||.+|.+|++||+++|+.+|||||++|+..+|+++++.+++|.. ......|+|+||++||.|||+||+||||+++|
T Consensus        14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y   93 (193)
T cd04382          14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW   93 (193)
T ss_pred             CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence            45799999999999999999999999999999999999999998853 23445699999999999999999999999999


Q ss_pred             HHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCcccccc
Q 003668          320 NALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIET  398 (804)
Q Consensus       320 ~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~  398 (804)
                      +.|+++.+..+ +.++..++.+|. +||+.|+.+|+||+.||++|+. ++.|+||+.|||+||||+||+++..      +
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~------~  165 (193)
T cd04382          94 KEFMEAAEILDEDNSRAALYQAIS-ELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVP------N  165 (193)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCC------C
Confidence            99999999888 888999999886 9999999999999999999999 9999999999999999999998631      1


Q ss_pred             ccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 003668          399 DFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKI  434 (804)
Q Consensus       399 d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~I  434 (804)
                            .+   .+.++..+..++.+|+.||++-+..
T Consensus       166 ------~~---~~~~~~~~~~~~~vve~Li~~~~~~  192 (193)
T cd04382         166 ------PD---PMTILQDTVRQPRVVERLLEIPSDY  192 (193)
T ss_pred             ------cc---HHHHHHHhHHHHHHHHHHHhCCccc
Confidence                  01   1345566777889999999987654

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=100.00  E-value=5.4e-35  Score=299.62  Aligned_cols=169  Identities=24%  Similarity=0.410  Sum_probs=150.3

Q ss_pred             CCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHH-HhcC-----CCCCCC-CCChhhhHHHHHHHHhhCCCCCCC
Q 003668          243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQG-----KTEFSP-EEDAHIIADCVKYVIRELPSSPVP  315 (804)
Q Consensus       243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~-ld~g-----~~~~~~-~~d~h~vAslLK~fLReLPePLlp  315 (804)
                      ..|.||.+||+||+.+|+.+|||||++|+..+|++++.. ++.+     ..++.. .+|+|+||++||+|||+||+||||
T Consensus        27 ~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~  106 (203)
T cd04374          27 IGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT  106 (203)
T ss_pred             ccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence            467799999999999999999999999999999999876 5654     233333 579999999999999999999999


Q ss_pred             hhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCcc
Q 003668          316 ASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGEC  394 (804)
Q Consensus       316 ~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~  394 (804)
                      +++|+.|+.+++..+ +.|+..++.+|. +||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+|||++.    
T Consensus       107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~----  181 (203)
T cd04374         107 YELHNDFINAAKSENLESRVNAIHSLVH-KLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQE----  181 (203)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCC----
Confidence            999999999999888 899999999886 99999999999999999999999999999999999999999999973    


Q ss_pred             ccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          395 EIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       395 ~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                        ++            ++++......+.||++||+|
T Consensus       182 --~~------------~~~~~~~~~~~~vve~LIeN  203 (203)
T cd04374         182 --ET------------VAAIMDIKFQNIVVEILIEN  203 (203)
T ss_pred             --cc------------HHHHHHhHHHHHHhhhHhcC
Confidence              11            23455677788899999987

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]

Probab=100.00  E-value=5.4e-36  Score=349.05  Aligned_cols=334  Identities=17%  Similarity=0.213  Sum_probs=243.7

Q ss_pred             eEEEeeeEee----cCC----CCCCCCceEEEEEeCCeeEEecCCCCCCCCC----------CcceeeecCCeeecCCcc
Q 003668           84 VFKSGPLFIS----SKG----IGWTSWKKRWFILTHTSLVFFRSDPSAIPQK----------GSEVNLTLGGIDLNNSGS  145 (804)
Q Consensus        84 v~KEGyL~~~----kKg----~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~----------g~e~~~~L~~~~l~~s~s  145 (804)
                      ..|+||||+.    ++|    ...+.|+.-|.+|.++.|+.|++.....+..          ...-.+.+.+|.+.-.- 
T Consensus       923 ~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y- 1001 (1973)
T KOG4407|consen  923 SEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY- 1001 (1973)
T ss_pred             hhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh-
Confidence            5799999972    333    3678999999999999999999876532211          01122334444332210 


Q ss_pred             eeeecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhccCCCCCCCCcc-------------ccc--------
Q 003668          146 VVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQ-------------NGI--------  204 (804)
Q Consensus       146 V~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~aP~~~~~~~~-------------~~i--------  204 (804)
                        -...++..|.++.  .+-..++|||++.++|-.|+..++.......-...|++.             +++        
T Consensus      1002 --setkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~ 1077 (1973)
T KOG4407|consen 1002 --SETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTV 1077 (1973)
T ss_pred             --hhhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCC
Confidence              0123444455543  334679999999999999999998655321100001000             000        


Q ss_pred             -------------cccchhhhcc------------------Cchhhhccc-CC-----------------------CCCc
Q 003668          205 -------------LKNDKAEAAN------------------GSVEQLKEK-PV-----------------------KFPV  229 (804)
Q Consensus       205 -------------f~~~~~~~~~------------------~s~~~~~~k-~~-----------------------k~~v  229 (804)
                                   |+......+.                  -+...||+- +.                       +-++
T Consensus      1078 ~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~ 1157 (1973)
T KOG4407|consen 1078 PSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPV 1157 (1973)
T ss_pred             cchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcc
Confidence                         0000000000                  011123221 11                       2348


Q ss_pred             cccchhHhhh--cCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC------CCCCCCChhhhHHH
Q 003668          230 IGRPILLALE--DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT------EFSPEEDAHIIADC  301 (804)
Q Consensus       230 FGvpLe~ll~--~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~------~~~~~~d~h~vAsl  301 (804)
                      |||+|...--  -++-||.+|..|+..+|.+|+.+.|||||+|+...|..|++.++++..      ..+.+.|+++|.+|
T Consensus      1158 ~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSL 1237 (1973)
T KOG4407|consen 1158 LGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSL 1237 (1973)
T ss_pred             cccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHH
Confidence            9999964321  145699999999999999999999999999999999999999999832      22346699999999


Q ss_pred             HHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhh
Q 003668          302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC  380 (804)
Q Consensus       302 LK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~  380 (804)
                      ||.|||.||+||||..+|..||++-+..+ -+|+..|+.||. .||+.+|.+|++|+.||..|+.|+++|||-+.||||+
T Consensus      1238 LK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~-~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~ 1316 (1973)
T KOG4407|consen 1238 LKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLR-KLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIM 1316 (1973)
T ss_pred             HHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHH-hCccchHHHHHHHHHHHHHHhcccccccccccceeEE
Confidence            99999999999999999999999999988 899999999886 9999999999999999999999999999999999999


Q ss_pred             hcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 003668          381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSA  440 (804)
Q Consensus       381 FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~~~  440 (804)
                      |||+|+|+++       +          .|..++.....++.||++||.+|+++|.+...
T Consensus      1317 FGPsiVRts~-------D----------nm~tmVthM~dQckIVEtLI~~~dwfF~esg~ 1359 (1973)
T KOG4407|consen 1317 FGPSIVRTSD-------D----------NMATMVTHMSDQCKIVETLIHYNDWFFDESGT 1359 (1973)
T ss_pred             eccceeccCC-------c----------cHHHHhhcchhhhhHHHHHHhhhhheeccCCC
Confidence            9999999973       2          12345566778899999999999999987433

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=100.00  E-value=7e-35  Score=295.44  Aligned_cols=178  Identities=22%  Similarity=0.271  Sum_probs=152.9

Q ss_pred             cccchhHhhhc------CCCCcHHHHHHHHHHHH-cCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHH
Q 003668          230 IGRPILLALED------VDGTPSFLEKAIRFIEE-HGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCV  302 (804)
Q Consensus       230 FGvpLe~ll~~------~~~VP~~l~~~i~~Le~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslL  302 (804)
                      ||+||++++.+      +..||.+|..|+++|.+ +|+++|||||++|+..+++++++.+|+|...+....|+|+||++|
T Consensus         1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL   80 (187)
T cd04389           1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL   80 (187)
T ss_pred             CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence            99999999854      23599999999999865 799999999999999999999999999987666667999999999


Q ss_pred             HHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhc--ccCCCCcchhhhh
Q 003668          303 KYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSK--NQNRMSTSAVAAC  380 (804)
Q Consensus       303 K~fLReLPePLlp~~l~~~~l~a~~~~~~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s--~~NkMt~~NLAv~  380 (804)
                      |.|||+||+||+|.++|+.++.+..     ....++.+|. +||+.|+.+|.||+.||+.|++++  +.||||+.|||+|
T Consensus        81 K~fLReLpePli~~~~~~~~i~~~~-----~~~~~~~li~-~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAiv  154 (187)
T cd04389          81 KLWLRELEEPLIPDALYQQCISASE-----DPDKAVEIVQ-KLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMV  154 (187)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHhhc-----CHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Confidence            9999999999999999999998643     1234666675 999999999999999999999755  7899999999999


Q ss_pred             hcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       381 FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      |||+|||++.      ++        .   ........+.+.+|+.||+|
T Consensus       155 f~P~l~~~~~------~~--------~---~~~~~~~~~~~~~~~~lI~~  187 (187)
T cd04389         155 FAPNILRCTS------DD--------P---RVIFENTRKEMSFLRTLIEH  187 (187)
T ss_pred             HccccCCCCC------CC--------H---HHHHHccHHHHHHHHHHhcC
Confidence            9999999873      22        1   22344566788999999987

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=100.00  E-value=7.1e-35  Score=300.78  Aligned_cols=188  Identities=14%  Similarity=0.257  Sum_probs=160.2

Q ss_pred             cccchhHhhhc-CCCCcHHHHHHHHHHHHcC--CccC----CeeecCCCHHHHHHHHHHHhcCCCCC-----CCCCChhh
Q 003668          230 IGRPILLALED-VDGTPSFLEKAIRFIEEHG--VQVE----GILRQAAYVDDVHRRIREFEQGKTEF-----SPEEDAHI  297 (804)
Q Consensus       230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~G--l~~E----GIFR~sG~~~~v~~L~~~ld~g~~~~-----~~~~d~h~  297 (804)
                      ||+||+.++.. +..||.+|.+|++||+.+|  +..+    ||||++|+.+.+++|++.|++|....     ...+|+|+
T Consensus         1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~   80 (212)
T cd04399           1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST   80 (212)
T ss_pred             CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence            99999988876 4579999999999999975  3333    99999999999999999999985322     34679999


Q ss_pred             hHHHHHHHHhhCCCCCCChhhHHHHHHHHhc------Cc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccC
Q 003668          298 IADCVKYVIRELPSSPVPASCCNALLEARRT------DR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQN  370 (804)
Q Consensus       298 vAslLK~fLReLPePLlp~~l~~~~l~a~~~------~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~N  370 (804)
                      ||++||.|||+||+||||+++|+.|+++...      .+ ++|+.+++.++. +||..|+.+|++|+.||.+|+.++..|
T Consensus        81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~-~LP~~n~~~L~~li~hL~rv~~~~~~~  159 (212)
T cd04399          81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLS-QLPKSHIATLDAIITHFYRLIEITKMG  159 (212)
T ss_pred             HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999887532      34 899999999886 999999999999999999999987666


Q ss_pred             ---CCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668          371 ---RMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE  437 (804)
Q Consensus       371 ---kMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e  437 (804)
                         +|++.|||+||||+|+||...      ...             .....+++.+|++||+||++||++
T Consensus       160 ~~~kM~~~nLa~vfgp~llr~~~~------~~~-------------~~~~~~~~~~~e~Li~~~~~iF~~  210 (212)
T cd04399         160 ESEEEYADKLATSLSREILRPIIE------SLL-------------TIGDKHGYKFFRDLLTHKDQIFSE  210 (212)
T ss_pred             cccccCHHHHHHHhhhhhcCCCcc------ccc-------------ccccHHHHHHHHHHHHhHHHhccc
Confidence               699999999999999998731      110             012356678999999999999985

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=100.00  E-value=2.7e-34  Score=292.80  Aligned_cols=174  Identities=20%  Similarity=0.276  Sum_probs=147.9

Q ss_pred             hHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCChhhhHHHHHHHHhhCCCCC
Q 003668          235 LLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVIRELPSSP  313 (804)
Q Consensus       235 e~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~fLReLPePL  313 (804)
                      .+.+...+.+|.+|.+||++|+++|+++|||||++|+.. +.++++.++.+. ......+|+|+||++||.|||+||+||
T Consensus         6 ~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePL   84 (200)
T cd04388           6 TEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPV   84 (200)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCcc
Confidence            334444578999999999999999999999999999865 788999999853 223346899999999999999999999


Q ss_pred             CChhhHHHHHHHHhc-Cc-hHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCC
Q 003668          314 VPASCCNALLEARRT-DR-GSRVSAMRTAIL-ETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLL  390 (804)
Q Consensus       314 lp~~l~~~~l~a~~~-~~-~~ri~~i~~lI~-~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~  390 (804)
                      ||+++|+.|+.+++. .+ ++++..++.+|. ..||..|+.+|+|||.||++|++|+..|+||+.|||+||||+|||++.
T Consensus        85 ip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~  164 (200)
T cd04388          85 IPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQP  164 (200)
T ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCc
Confidence            999999999998854 44 788999998773 279999999999999999999999999999999999999999999973


Q ss_pred             CCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          391 AGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       391 ~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                      .      .               .....+...+|++||.+
T Consensus       165 ~------~---------------~~~~~~~~~vvE~Li~~  183 (200)
T cd04388         165 A------S---------------SDSPEFHIRIIEVLITS  183 (200)
T ss_pred             c------c---------------ccchhhHHHHHHHHHHH
Confidence            1      1               01234667899999985

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-31  Score=303.12  Aligned_cols=318  Identities=21%  Similarity=0.297  Sum_probs=231.6

Q ss_pred             CCCceEEEEEeCCeeEEecCCCCCCCCC---CcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchh
Q 003668          100 TSWKKRWFILTHTSLVFFRSDPSAIPQK---GSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLE  176 (804)
Q Consensus       100 ksWkKRWfVL~~~sL~yYKd~~~~~p~~---g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSee  176 (804)
                      .-|...|..++++.+.||.+.+.+....   .+.-.....+..+..+.....+...+..+.+......+..|+++-.++.
T Consensus       271 ~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~net  350 (650)
T KOG1450|consen  271 TVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNET  350 (650)
T ss_pred             cccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCCc
Confidence            4599999999999999998876443221   0111111111111111100011112222344555556778999999999


Q ss_pred             hHHHHHHHHHHHhccCCCCCCC--Cccc---------------------------ccccc----chhh------------
Q 003668          177 DLYDWKTALENALAQAPSTGSA--TGQN---------------------------GILKN----DKAE------------  211 (804)
Q Consensus       177 E~~eWI~AI~~ai~~aP~~~~~--~~~~---------------------------~if~~----~~~~------------  211 (804)
                      ....|..+....+...++.+.+  .|..                           ++...    .++.            
T Consensus       351 ~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~~~  430 (650)
T KOG1450|consen  351 SFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDPQK  430 (650)
T ss_pred             cccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccchHH
Confidence            9999999999887533331110  0100                           00000    0000            


Q ss_pred             ------hccCchhhhccc--CCCCCccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHH
Q 003668          212 ------AANGSVEQLKEK--PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREF  282 (804)
Q Consensus       212 ------~~~~s~~~~~~k--~~k~~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~l  282 (804)
                            +..+-.+..+++  +.+..|||++|+.+|.+ .+.||.+|.+|+..|+.+|++.+||||++|+...|++|+..+
T Consensus       431 ~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~  510 (650)
T KOG1450|consen  431 KLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQS  510 (650)
T ss_pred             HHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhc
Confidence                  000011112233  44589999999999876 567999999999999999999999999999999999999999


Q ss_pred             hcCC-CCCC--CCCChhhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003668          283 EQGK-TEFS--PEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILM  358 (804)
Q Consensus       283 d~g~-~~~~--~~~d~h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~  358 (804)
                      |... ..+.  .+.|+|+|+++||.|||+||+||+|..++..|..+..... ..|...++.+|. .||..|+.||+||+.
T Consensus       511 d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~-~lP~~n~~Tlr~lv~  589 (650)
T KOG1450|consen  511 DQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIG-LLPDANYQTLRYLVR  589 (650)
T ss_pred             CccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHh-hCCCcchhHHHHHHH
Confidence            9542 2332  3469999999999999999999999999999999999988 899999999986 999999999999999


Q ss_pred             HHHHHHhhcccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668          359 MMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG  436 (804)
Q Consensus       359 ~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~  436 (804)
                      ||++|..|++.|+|+.+||||||||+|+.+..      ++            -..+.....+++||+.||+++..+|+
T Consensus       590 HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~------~~------------~~~a~~~~~~~~ivq~lle~~~~~f~  649 (650)
T KOG1450|consen  590 HLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQ------ET------------SSEAIHSTYQSQIVQLLLENVSSAFG  649 (650)
T ss_pred             HHHHHHhccccccccccceEEEeccccccccc------cc------------cchhhHHhHHHHHHHHHHHhhHhhcc
Confidence            99999999999999999999999999999752      21            01234566788999999999999996

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=99.97  E-value=1.4e-30  Score=259.58  Aligned_cols=169  Identities=29%  Similarity=0.476  Sum_probs=153.9

Q ss_pred             CCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHhhCCCCCCChhhHH
Q 003668          243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF--SPEEDAHIIADCVKYVIRELPSSPVPASCCN  320 (804)
Q Consensus       243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~--~~~~d~h~vAslLK~fLReLPePLlp~~l~~  320 (804)
                      .||.+|..|+.||+++|++++||||++|+..+++++++.++.|....  ...+|+|++|++||.|||+||+||+|.+.|+
T Consensus         2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~   81 (174)
T smart00324        2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE   81 (174)
T ss_pred             CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence            58999999999999999999999999999999999999999986543  5678999999999999999999999999999


Q ss_pred             HHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCccccccc
Q 003668          321 ALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETD  399 (804)
Q Consensus       321 ~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d  399 (804)
                      .|+.+++..+ .+++..++.++. +||..|+.+|.+|+.||+.|+.+++.|+|++.|||+||||+|+|++...       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~-~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~-------  153 (174)
T smart00324       82 EFIEAAKVEDETERLRALRELIS-LLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE-------  153 (174)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCccc-------
Confidence            9999998777 889999999886 9999999999999999999999999999999999999999999997311       


Q ss_pred             cccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          400 FNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       400 ~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                                 ........+.+.+|++||+|
T Consensus       154 -----------~~~~~~~~~~~~~i~~li~~  173 (174)
T smart00324      154 -----------VASLKDIRHQNTVVETLIEN  173 (174)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHhc
Confidence                       11345667889999999987

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]

Probab=99.97  E-value=6.2e-29  Score=283.31  Aligned_cols=197  Identities=21%  Similarity=0.253  Sum_probs=167.8

Q ss_pred             CCCCccccchhHhhhc----CCCCcHHHHHHHH-HHHH-cCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhh
Q 003668          225 VKFPVIGRPILLALED----VDGTPSFLEKAIR-FIEE-HGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHII  298 (804)
Q Consensus       225 ~k~~vFGvpLe~ll~~----~~~VP~~l~~~i~-~Le~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~v  298 (804)
                      ....||||++..+...    ++.||.++..+.. .|+. .|++.|||||++|...+++.+++.||.|.+......|||+|
T Consensus       142 ~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~  221 (577)
T KOG4270|consen  142 ASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCL  221 (577)
T ss_pred             chhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHH
Confidence            3467999999866654    4447999988888 6655 78999999999999999999999999996443336899999


Q ss_pred             HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchh
Q 003668          299 ADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAV  377 (804)
Q Consensus       299 AslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NL  377 (804)
                      |++||.|||+||+|+|++.+|++|+.++...+ +++...++.++. +||+.|+.+|+|+|.||+.|+++++.||||++||
T Consensus       222 agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~-~LPp~n~slL~yli~flA~v~~~~~vNKMs~~Nl  300 (577)
T KOG4270|consen  222 AGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQ-KLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNL  300 (577)
T ss_pred             HHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHHHHHHhhhcccchhhc
Confidence            99999999999999999999999999988888 899999999775 9999999999999999999999999999999999


Q ss_pred             hhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668          378 AACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE  437 (804)
Q Consensus       378 Av~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e  437 (804)
                      ||||||+|+|+..               ....++.++...+.+..+|+.+|+++++.|..
T Consensus       301 AiV~gPNl~~~~~---------------p~~~l~~avqvs~~~~~lie~~l~~~~~~~~g  345 (577)
T KOG4270|consen  301 AIVFGPNLLWMKD---------------PLTALMYAVQVSNFLKGLIEKTLEERDTSFPG  345 (577)
T ss_pred             eeEecCCccccCC---------------hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence            9999999999972               11234455555566666777777788877763

>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]

Probab=99.97  E-value=4.5e-30  Score=285.46  Aligned_cols=207  Identities=21%  Similarity=0.316  Sum_probs=171.8

Q ss_pred             CCCccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC---CCCCCCChhhhHHH
Q 003668          226 KFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT---EFSPEEDAHIIADC  301 (804)
Q Consensus       226 k~~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~~~~~d~h~vAsl  301 (804)
                      .+.||||||..++++ +-.+|.+|.+++.||+++|++++||||++|..++|+.|++.++..-.   ..++....|++|.+
T Consensus       297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl  376 (674)
T KOG2200|consen  297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL  376 (674)
T ss_pred             CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence            489999999988886 55699999999999999999999999999999999999999886421   22345578999999


Q ss_pred             HHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhh
Q 003668          302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC  380 (804)
Q Consensus       302 LK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~  380 (804)
                      ||+|||+||+||||.++.+.|+.+++... .+|+.+++.+|+ .||.+||.+|+.|+.||++|+.+.++|+||+.|||+|
T Consensus       377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc  455 (674)
T KOG2200|consen  377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC  455 (674)
T ss_pred             HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence            99999999999999999999999999999 999999999999 9999999999999999999999999999999999999


Q ss_pred             hcccccCCCCCCcc---ccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668          381 MAPLLLRPLLAGEC---EIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG  436 (804)
Q Consensus       381 FgPtLlrp~~~~~~---~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~  436 (804)
                      |||+||.......-   .+-......|....   .....+.-+..++..||.++..+|.
T Consensus       456 mAPsLF~l~~~~~d~spr~~~~k~~~g~p~~---kel~~a~aaa~~l~~mI~y~k~Lf~  511 (674)
T KOG2200|consen  456 MAPSLFHLNALKLDSSPRVRQKKSETGKPDQ---KELNEALAAAQGLAHMIKYQKLLFT  511 (674)
T ss_pred             hcchHHhhccCCCCCCccccccccccCCCch---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999986532110   00000000111111   1123344567799999999999996

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=99.97  E-value=4.4e-30  Score=292.66  Aligned_cols=266  Identities=22%  Similarity=0.343  Sum_probs=213.3

Q ss_pred             CCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchhhH
Q 003668           99 WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDL  178 (804)
Q Consensus        99 ~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~  178 (804)
                      .-.|.+-||.+.+.+|++.-.....   .+  .-..|+...-....+......|+-.|+++..   ||++|+|..+.-+.
T Consensus       628 ~~~~r~gwfsl~gssl~~~~~~~~v---e~--d~~hlrrlqElsi~s~~~n~~K~~~l~lve~---grTLYI~g~~rldf  699 (1186)
T KOG1117|consen  628 LDQARKGWFSLDGSSLHFCLQMQPV---EE--DRMHLRRLQELSISSMVQNGEKLDVLVLVEK---GRTLYIQGETRLDF  699 (1186)
T ss_pred             hhhccccceecCCCeeEEecCCCcC---ch--hHHHHHHHHHHhhhhccCCcccccceEEEee---ccEEEEecCCcchH
Confidence            4569999999999999887643211   11  1011221110011111233457777888776   99999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCCCCccccccccchhhhccCchhhhcccCCCCCccccchhHhhhcCCCCcHHHHHHHHHHHHc
Q 003668          179 YDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEH  258 (804)
Q Consensus       179 ~eWI~AI~~ai~~aP~~~~~~~~~~if~~~~~~~~~~s~~~~~~k~~k~~vFGvpLe~ll~~~~~VP~~l~~~i~~Le~~  258 (804)
                      ..|..||.++.+. +                                     |.-|+++.-..+.||.||..||.|+.++
T Consensus       700 t~W~~AIekaa~~-~-------------------------------------gt~LqeqqLs~~dIPvIVd~CI~FVTqy  741 (1186)
T KOG1117|consen  700 TVWHTAIEKAAGT-D-------------------------------------GTALQEQQLSKNDIPVIVDSCIAFVTQY  741 (1186)
T ss_pred             HHHHHHHHHHhcC-C-------------------------------------cchhhhhhccCCCCcEehHHHHHHHHHh
Confidence            9999999998842 1                                     1112222333567999999999999999


Q ss_pred             CCccCCeeecCCCHHHHHHHHHHHhcCCCC--C-CCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHH
Q 003668          259 GVQVEGILRQAAYVDDVHRRIREFEQGKTE--F-SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRV  334 (804)
Q Consensus       259 Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~-~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri  334 (804)
                      |+..|||||.+|...++.+|.+.|-+....  + ..+.-+.+|+++||+|||+|++||+|.++|..|++++...+ ++|+
T Consensus       742 Gl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~~d~~Er~  821 (1186)
T KOG1117|consen  742 GLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAETQDDKERI  821 (1186)
T ss_pred             CccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhccchHHHH
Confidence            999999999999999999999999876422  2 23557899999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHH
Q 003668          335 SAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAA  414 (804)
Q Consensus       335 ~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~  414 (804)
                      .....+|. .||..||.||+.||.||++|..+++.|+|+++|||.||||+||...              |.         
T Consensus       822 ~rY~~lI~-~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTd--------------gq---------  877 (1186)
T KOG1117|consen  822 KRYGALIR-SLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTD--------------GQ---------  877 (1186)
T ss_pred             HHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecC--------------CC---------
Confidence            99999997 9999999999999999999999999999999999999999999864              11         


Q ss_pred             HHHHHHHHHHHHHHhhcccccC
Q 003668          415 AAANHAQAIVITLLEEYDKIFG  436 (804)
Q Consensus       415 ~~~~~~~~IVe~LIeny~~IF~  436 (804)
                        ..+..+|++-||.+|..+|.
T Consensus       878 --dehevnVledLingYvvVF~  897 (1186)
T KOG1117|consen  878 --DEHEVNVLEDLINGYVVVFE  897 (1186)
T ss_pred             --chhhhhHHHHHhcCceEEEE
Confidence              12567799999999999997

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=99.96  E-value=2.4e-29  Score=261.16  Aligned_cols=142  Identities=17%  Similarity=0.318  Sum_probs=128.2

Q ss_pred             CCcHHHHHHHHHHHHcCCccCCeeecCCCHHH----HHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHhhCCCCCCChhh
Q 003668          243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDD----VHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASC  318 (804)
Q Consensus       243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~----v~~L~~~ld~g~~~~~~~~d~h~vAslLK~fLReLPePLlp~~l  318 (804)
                      .||.+|.+|++||+++|+.+|||||++|+...    ++++++.+|+|.... ...++|+||++||.|||+||+||||+++
T Consensus        49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~  127 (220)
T cd04380          49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSL  127 (220)
T ss_pred             ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHH
Confidence            48999999999999999999999999999999    999999999986443 5689999999999999999999999999


Q ss_pred             HHHHHHHHhcCchHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCC
Q 003668          319 CNALLEARRTDRGSRVSAMRTAILE-TFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLL  390 (804)
Q Consensus       319 ~~~~l~a~~~~~~~ri~~i~~lI~~-~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~  390 (804)
                      |+.|+.+.... .   ..++.+| + +||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|||++.
T Consensus       128 y~~~~~~~~~~-~---~~~~~ll-~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~  195 (220)
T cd04380         128 YERLLEAVANN-E---EDKRQVI-RISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPP  195 (220)
T ss_pred             HHHHHHHhcCc-H---HHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence            99999987222 2   2344434 5 89999999999999999999999999999999999999999999983

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=99.96  E-value=7.1e-29  Score=244.42  Aligned_cols=167  Identities=26%  Similarity=0.489  Sum_probs=151.2

Q ss_pred             cHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHH
Q 003668          245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIRELPSSPVPASCCNALL  323 (804)
Q Consensus       245 P~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~l  323 (804)
                      |.+|..|++||+++|+.++||||++|+..+++++++.++.|... ....+|+|++|++||.|||+||+||||.++|+.|+
T Consensus         1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~   80 (169)
T cd00159           1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI   80 (169)
T ss_pred             ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence            88999999999999999999999999999999999999998754 45678999999999999999999999999999999


Q ss_pred             HHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCcccccccccc
Q 003668          324 EARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNV  402 (804)
Q Consensus       324 ~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~  402 (804)
                      .++...+ ..++..++.++. +||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+||+++...          
T Consensus        81 ~~~~~~~~~~~~~~~~~~i~-~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~----------  149 (169)
T cd00159          81 ELAKIEDEEERIEALKELLK-SLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD----------  149 (169)
T ss_pred             HHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence            9998877 889999999886 9999999999999999999999999999999999999999999987311          


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668          403 GGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       403 ~g~~s~ql~~a~~~~~~~~~IVe~LIen  430 (804)
                              +........+..+|++||.|
T Consensus       150 --------~~~~~~~~~~~~~~~~li~~  169 (169)
T cd00159         150 --------DELLEDIKKLNEIVEFLIEN  169 (169)
T ss_pred             --------HHHHHHhHHHHHHHHHHHhC
Confidence                    12234556788899999975

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-29  Score=288.75  Aligned_cols=183  Identities=22%  Similarity=0.383  Sum_probs=161.6

Q ss_pred             CCCCccccchhHhhh-----cCCCCcHHHHHHHHHHH-HcCCccCCeeecCCCHHHHHHHHHHHhcC-CCCC---CCCCC
Q 003668          225 VKFPVIGRPILLALE-----DVDGTPSFLEKAIRFIE-EHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEF---SPEED  294 (804)
Q Consensus       225 ~k~~vFGvpLe~ll~-----~~~~VP~~l~~~i~~Le-~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~~---~~~~d  294 (804)
                      ..+.|||.||...+.     +..++|.+|.+|++||+ .+|++.|||||++|+...|+.|++.||.+ +.++   ..+.|
T Consensus       895 ~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~d  974 (1112)
T KOG4269|consen  895 KQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMD  974 (1112)
T ss_pred             eeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccccc
Confidence            358999977753332     24579999999999999 59999999999999999999999999998 3222   34679


Q ss_pred             hhhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCC
Q 003668          295 AHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMS  373 (804)
Q Consensus       295 ~h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt  373 (804)
                      +|+|||+||+|||+||+|||+.++|..|.......+ ..+...+..+|. .||++|+.+|.+|+.||.+|+.++.+|||+
T Consensus       975 Vn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~-slP~aNl~l~~~LlehL~RI~e~ekvNKMn 1053 (1112)
T KOG4269|consen  975 VNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLIS-SLPPANLALFLFLLEHLKRIAEKEKVNKMN 1053 (1112)
T ss_pred             HHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHH-hCCChhHHHHHHHHHHHHHHHhhccccccc
Confidence            999999999999999999999999999999998888 888899999886 899999999999999999999999999999


Q ss_pred             cchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 003668          374 TSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSA  440 (804)
Q Consensus       374 ~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~~~  440 (804)
                      ++|||+||+|+|.+|.+                                +...||-||+-||.+...
T Consensus      1054 lrNlciVFsPTLniPse--------------------------------~~~~li~n~d~if~dv~~ 1088 (1112)
T KOG4269|consen 1054 LRNLCIVFSPTLNIPSE--------------------------------IESKLILNYDHIFTDVMR 1088 (1112)
T ss_pred             ccceeeeecccccCcHH--------------------------------hhhhhccchhhhhccchH
Confidence            99999999999999862                                456678889999986643

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=99.95  E-value=4.4e-28  Score=235.50  Aligned_cols=144  Identities=25%  Similarity=0.515  Sum_probs=134.5

Q ss_pred             cHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHH
Q 003668          245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDAHIIADCVKYVIRELPSSPVPASCCNAL  322 (804)
Q Consensus       245 P~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~  322 (804)
                      |.+|..|++||+++|+.++||||++|+..+++++++.++.|...  .....|+|+||++||.||++||+||+|.++|+.|
T Consensus         1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~   80 (151)
T PF00620_consen    1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF   80 (151)
T ss_dssp             EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence            88999999999999999999999999999999999999999755  5678899999999999999999999999999999


Q ss_pred             HHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCC
Q 003668          323 LEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL  389 (804)
Q Consensus       323 l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~  389 (804)
                      +.+.+..+ .+++..++.++. +||..|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~  147 (151)
T PF00620_consen   81 IAASKSADEEEQIEAIRSLLQ-SLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP  147 (151)
T ss_dssp             HHHHTSSSHHHHHHHHHHHHT-TS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred             hhhhccchhhHHHHHHHHhhh-ccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence            99888877 889999999886 9999999999999999999999999999999999999999999987

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=99.94  E-value=2.8e-27  Score=255.59  Aligned_cols=196  Identities=23%  Similarity=0.359  Sum_probs=172.3

Q ss_pred             CCCCCccccchhHhhhc---CCCCcHHHHHHHHHHHHcC-CccCCeeecCCCHHHHHHHHHHHhcCCCCCCCC-CChhhh
Q 003668          224 PVKFPVIGRPILLALED---VDGTPSFLEKAIRFIEEHG-VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPE-EDAHII  298 (804)
Q Consensus       224 ~~k~~vFGvpLe~ll~~---~~~VP~~l~~~i~~Le~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~-~d~h~v  298 (804)
                      +.++.-||+||..+...   +..+|.+|..|+.+|..+| +.+|||||.+++.+.+.++.+.+++|..+.... -++|..
T Consensus       248 pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~h~~  327 (467)
T KOG4406|consen  248 PLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDLHAP  327 (467)
T ss_pred             CCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccchhh
Confidence            67899999999877654   5679999999999999999 999999999999999999999999997444433 359999


Q ss_pred             HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 003668          299 ADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA  378 (804)
Q Consensus       299 AslLK~fLReLPePLlp~~l~~~~l~a~~~~~~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLA  378 (804)
                      |.+||.|||+||+||++.++|..+......+...|...+.+++..+||+.|+.+|++++.||.+|++|+..|+||+.|||
T Consensus       328 avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa  407 (467)
T KOG4406|consen  328 AVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLA  407 (467)
T ss_pred             HHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccce
Confidence            99999999999999999999999888776666888999999998679999999999999999999999999999999999


Q ss_pred             hhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 003668          379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG  438 (804)
Q Consensus       379 v~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~  438 (804)
                      +||||+|+|+...               +.    .+...+..+.++++||+||..+|...
T Consensus       408 ~vfGpnl~w~~~~---------------s~----tl~q~npin~F~~~li~~~~~~f~~~  448 (467)
T KOG4406|consen  408 VVFGPNLLWAQDE---------------SL----TLKQINPINKFTKFLIEHYKKLFTTP  448 (467)
T ss_pred             eeecccccccccc---------------cc----cHHHhccHHHHHHHHHHhhhhccCCC
Confidence            9999999999731               11    12234567889999999999999743

>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=99.93  E-value=1.1e-25  Score=248.26  Aligned_cols=183  Identities=20%  Similarity=0.384  Sum_probs=158.1

Q ss_pred             CCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcC-----CCCCCCCCChhhhHHHHHHHHhhCCCCCCChh
Q 003668          243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-----KTEFSPEEDAHIIADCVKYVIRELPSSPVPAS  317 (804)
Q Consensus       243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-----~~~~~~~~d~h~vAslLK~fLReLPePLlp~~  317 (804)
                      .||.+|.+|+.||.++|+.+.||||++|+..+|++|++.|+++     +...++.+++|+||++||.|||+||+||||.+
T Consensus        93 ~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~  172 (412)
T KOG2710|consen   93 QIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLE  172 (412)
T ss_pred             eCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCHH
Confidence            4899999999999999999999999999999999999999998     34556678999999999999999999999999


Q ss_pred             hHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccC-----------CCCcchhhhhhcccc
Q 003668          318 CCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQN-----------RMSTSAVAACMAPLL  385 (804)
Q Consensus       318 l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~N-----------kMt~~NLAv~FgPtL  385 (804)
                      +|+.|+..++... .+++..++.++. .||..|+.+|.+|+.||+.|+.|++.|           +|++.|||+||+|+|
T Consensus       173 LY~~f~~p~kl~~e~e~~~~l~l~~~-llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~i  251 (412)
T KOG2710|consen  173 LYESFINPAKLEPETEQLGVLQLLIY-LLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPNI  251 (412)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHHH-hcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcchh
Confidence            9999999999999 599999999886 999999999999999999999999999           999999999999999


Q ss_pred             cCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668          386 LRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG  436 (804)
Q Consensus       386 lrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~  436 (804)
                      +......    ....++.+-+      .......+..++..||+||+.+|.
T Consensus       252 L~k~~~~----~~~~s~~~~~------~~s~~~~i~~~~~~~~~N~e~~f~  292 (412)
T KOG2710|consen  252 LYKLKGS----HKELSVTGVA------NESESEAIVNFAQMMIENLEALFQ  292 (412)
T ss_pred             hhcccCC----Cccccccccc------chhhHHHHHHHHHHhhhhHHHhhc
Confidence            9953200    1112222111      112334566789999999999998

>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]

Probab=99.90  E-value=7.7e-24  Score=257.91  Aligned_cols=161  Identities=25%  Similarity=0.423  Sum_probs=149.7

Q ss_pred             ccccchhHhhh-cCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCChhhhHHHHHHHH
Q 003668          229 VIGRPILLALE-DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVI  306 (804)
Q Consensus       229 vFGvpLe~ll~-~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~fL  306 (804)
                      +||+.|..++. ....||.++.+|+.+|+.+|+.++||||++|...+++.|...++.|. .......|+|+|+++||+||
T Consensus       602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL  681 (918)
T KOG1453|consen  602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL  681 (918)
T ss_pred             cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence            99999998887 56789999999999999999999999999999999999999999986 34455789999999999999


Q ss_pred             hhCCCCCCChhhHHHHHHHHhcCc-h------HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhh
Q 003668          307 RELPSSPVPASCCNALLEARRTDR-G------SRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA  379 (804)
Q Consensus       307 ReLPePLlp~~l~~~~l~a~~~~~-~------~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv  379 (804)
                      |.||+|||++.+|+.|+.+.+... .      +++..++.++. .||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus       682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai  760 (918)
T KOG1453|consen  682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLE-QLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI  760 (918)
T ss_pred             HhccccccccchHHHHHhhhccccccccccccccchhHHHHHH-hcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence            999999999999999999999844 3      48999999875 999999999999999999999999999999999999


Q ss_pred             hhcccccCCCC
Q 003668          380 CMAPLLLRPLL  390 (804)
Q Consensus       380 ~FgPtLlrp~~  390 (804)
                      ||||||||++.
T Consensus       761 vF~Ptllr~~d  771 (918)
T KOG1453|consen  761 VFAPTLLRPPD  771 (918)
T ss_pred             cccCcccCCCC
Confidence            99999999984

>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=99.90  E-value=1.5e-24  Score=244.18  Aligned_cols=238  Identities=17%  Similarity=0.213  Sum_probs=207.3

Q ss_pred             CCCCCccccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHH
Q 003668          224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVK  303 (804)
Q Consensus       224 ~~k~~vFGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK  303 (804)
                      +.++.+||.||..+|.+.+ +|..+..++-++...|.-++||||..++...+++|++.++.|..+-.....++++|.++|
T Consensus        77 ~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~k  155 (741)
T KOG4724|consen   77 TADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVDK  155 (741)
T ss_pred             CCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhhh
Confidence            4568899999999888776 999999999999999999999999999999999999999999766666779999999999


Q ss_pred             HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhc
Q 003668          304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA  382 (804)
Q Consensus       304 ~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~Fg  382 (804)
                      .|||.+|.-+|..++|+.|+.+....+ ++++.+|+++. ++||+.|..+|++|+..| .|..++..|.|+..|||+|++
T Consensus       156 dflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~-d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~  233 (741)
T KOG4724|consen  156 DFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQG-DRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVN  233 (741)
T ss_pred             chhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHH-hhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhc
Confidence            999999999999999999999998888 99999999976 599999999999999999 899999999999999999999


Q ss_pred             ccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCccccccccccCCCCCCCCCCC
Q 003668          383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASPEELYSESELSGSGTEEATDD  462 (804)
Q Consensus       383 PtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~~~s~~~l~~ds~~~~~~sees~d~  462 (804)
                      |++++++.....+.+.++                ++++.-+++|||+||-.||+++....   |+.+.......++.+|-
T Consensus       234 p~~l~~~~~~s~e~~k~l----------------n~kv~~l~~flI~nclrifGe~i~~~---fr~~s~~s~~~e~~sd~  294 (741)
T KOG4724|consen  234 PIKLKVLTRTSSEFGKGL----------------NGKVPPLPIFLIVNCLRIFGEDIEGI---FRKSSKQSTFKELKSDL  294 (741)
T ss_pred             chhcccccccChhhhccc----------------cCCCCCceeeehhhhHHhhcccccce---eecccccccchhhhhhh
Confidence            999999854444333322                23455689999999999999875544   77766666667777777


Q ss_pred             CCcCCCCCCCCCCCCCCCCCC
Q 003668          463 DESYEDDDQDGATPESDAYTD  483 (804)
Q Consensus       463 d~~~~d~~y~s~e~e~~~d~d  483 (804)
                      +....|..||+.+++.+.+.|
T Consensus       295 s~~q~Ds~yds~~~~~~~~~~  315 (741)
T KOG4724|consen  295 SKGQVDSHYDSTHVLASILKE  315 (741)
T ss_pred             ccccccccccccchhhhhhhh
Confidence            777779999999998776554

>KOG3564 consensus GTPase-activating protein [General function prediction only]

Probab=99.90  E-value=4e-23  Score=225.28  Aligned_cols=175  Identities=21%  Similarity=0.338  Sum_probs=149.0

Q ss_pred             CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHhhCCCCCCChhhH
Q 003668          241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRELPSSPVPASCC  319 (804)
Q Consensus       241 ~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLReLPePLlp~~l~  319 (804)
                      ...||.+|..|+..||.+|+..+||||++|....+++|++++-+|+. ......|+|+||++||.|||+|.+||||....
T Consensus       359 aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~  438 (604)
T KOG3564|consen  359 APMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLR  438 (604)
T ss_pred             cccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHH
Confidence            34589999999999999999999999999999999999999999974 33456799999999999999999999999999


Q ss_pred             HHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCcccccc
Q 003668          320 NALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIET  398 (804)
Q Consensus       320 ~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~  398 (804)
                      .+|+.|+...+ ..-+.++...|. .||..||.+|.|||-|+++|++ +..|+|++.|||.+|||+++--+.++      
T Consensus       439 rdf~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~------  510 (604)
T KOG3564|consen  439 RDFMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPN------  510 (604)
T ss_pred             HHHHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCC------
Confidence            99999999888 666777777787 7999999999999999999888 88999999999999999999865321      


Q ss_pred             ccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 003668          399 DFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYD  432 (804)
Q Consensus       399 d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~  432 (804)
                            .+.   ..+...+.-+.++|+.|++--.
T Consensus       511 ------pd~---~~~l~dv~~q~rvmkaLlelp~  535 (604)
T KOG3564|consen  511 ------PDQ---VTMLQDVKTQPRVMKALLELPL  535 (604)
T ss_pred             ------ccH---hHHHHhhhhhHHHHHHHHhCCH
Confidence                  111   2233445566777887776433

>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1

Probab=99.87  E-value=2.3e-22  Score=179.78  Aligned_cols=87  Identities=47%  Similarity=0.614  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCC-CCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHH
Q 003668          680 SRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSF-PIPDTIDEKTKVELGEIAQAETDIINLKQKAKDL  758 (804)
Q Consensus       680 ~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l  758 (804)
                      |||++.+++|.+|||||.+||+|||+|+++|.|||.||+.+.|++ +++++||.+++++|.|||++|++|++||++|.+|
T Consensus         1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L   80 (88)
T PF14389_consen    1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL   80 (88)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999988 6779999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 003668          759 RVQLSEQL  766 (804)
Q Consensus       759 ~~~l~~~~  766 (804)
                      +.+|.+||
T Consensus        81 ~~~l~~q~   88 (88)
T PF14389_consen   81 YRQLFQQR   88 (88)
T ss_pred             HHHHHhcC
Confidence            99999986

>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]

Probab=99.75  E-value=1.4e-18  Score=201.58  Aligned_cols=158  Identities=23%  Similarity=0.403  Sum_probs=145.7

Q ss_pred             CCccccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhc-CCCCCCC-CCChhhhHHHHHH
Q 003668          227 FPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQ-GKTEFSP-EEDAHIIADCVKY  304 (804)
Q Consensus       227 ~~vFGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~-g~~~~~~-~~d~h~vAslLK~  304 (804)
                      ...||.||..+......||.++.+|+.||+..|+.++||||++|+..+...++.+|.+ +..++.. +..++++|+.+|.
T Consensus       915 s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlks  994 (1100)
T KOG4271|consen  915 SNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALKS  994 (1100)
T ss_pred             hhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcchh
Confidence            5689999988887788899999999999999999999999999999999999999876 3333332 4468999999999


Q ss_pred             HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcc
Q 003668          305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP  383 (804)
Q Consensus       305 fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgP  383 (804)
                      ||..||+||+|+.++..|.+++++.+ ..++..++..+. .||+.|+.+++|++.||.+|+.....|.||..||.|||+|
T Consensus       995 ffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a-~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~ 1073 (1100)
T KOG4271|consen  995 FFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASA-KLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPT 1073 (1100)
T ss_pred             hhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhh-hcCchHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence            99999999999999999999999999 899999999886 9999999999999999999999999999999999999999


Q ss_pred             cc
Q 003668          384 LL  385 (804)
Q Consensus       384 tL  385 (804)
                      .|
T Consensus      1074 ~~ 1075 (1100)
T KOG4271|consen 1074 LL 1075 (1100)
T ss_pred             hH
Confidence            88

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=99.74  E-value=6.8e-18  Score=177.05  Aligned_cols=166  Identities=22%  Similarity=0.254  Sum_probs=140.5

Q ss_pred             CCCCCccccchhHhhhcC-CCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC--CCC--CCCChhhh
Q 003668          224 PVKFPVIGRPILLALEDV-DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT--EFS--PEEDAHII  298 (804)
Q Consensus       224 ~~k~~vFGvpLe~ll~~~-~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~~--~~~d~h~v  298 (804)
                      |.-..|||.+|+.++++. ..-|.++.+|+..||++|++.-|+|+++|+..+-+.|++.|+....  .+.  .-.|..+|
T Consensus       179 PrlrgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvI  258 (442)
T KOG1452|consen  179 PRLRGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVI  258 (442)
T ss_pred             cccccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCccee
Confidence            333569999999998774 4578899999999999999999999999999999999999987532  222  23488999


Q ss_pred             HHHHHHHHhhCCCCCCChhhHHHHHHHHhc--Cc--hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCc
Q 003668          299 ADCVKYVIRELPSSPVPASCCNALLEARRT--DR--GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST  374 (804)
Q Consensus       299 AslLK~fLReLPePLlp~~l~~~~l~a~~~--~~--~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~  374 (804)
                      ++++|.|||||||||++...|...++++..  ++  ..-...+-.+| +.||..++.+|..++.||..|..+++.|+||+
T Consensus       259 tg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~ii-dcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~  337 (442)
T KOG1452|consen  259 TGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAII-DCLERELSKQLNVCLDHLSTVLCSSPHNGLTP  337 (442)
T ss_pred             ecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHH-HHHHHHhhhhHhHHHhhhhHheecCCcCCcCH
Confidence            999999999999999999999888887642  22  33344555545 59999999999999999999999999999999


Q ss_pred             chhhhhhcccccCCCC
Q 003668          375 SAVAACMAPLLLRPLL  390 (804)
Q Consensus       375 ~NLAv~FgPtLlrp~~  390 (804)
                      ..||.||||.||-...
T Consensus       338 ~~Ls~i~~P~L~~~~~  353 (442)
T KOG1452|consen  338 TRLSLIFAPLLFFCLD  353 (442)
T ss_pred             HHHHHHhhhhHHHhhc
Confidence            9999999999988653

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=99.60  E-value=6.1e-15  Score=151.93  Aligned_cols=181  Identities=14%  Similarity=0.219  Sum_probs=141.3

Q ss_pred             CccccchhHh-hhcCCCCcHHHHHHH--HHHHHcCCcc--CCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCC-h----
Q 003668          228 PVIGRPILLA-LEDVDGTPSFLEKAI--RFIEEHGVQV--EGILRQAAYVDDVHRRIREFEQGKTE--FSPEED-A----  295 (804)
Q Consensus       228 ~vFGvpLe~l-l~~~~~VP~~l~~~i--~~Le~~Gl~~--EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d-~----  295 (804)
                      .+||+|+.+- ++.+...|..+....  +++..+.++.  .|+||.++...-+...++.++.....  ...... +    
T Consensus        20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~   99 (235)
T cd04405          20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD   99 (235)
T ss_pred             HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence            5899988644 444455677775555  5555554444  69999999999999999988875311  110111 1    


Q ss_pred             ------hhhHHHHHHHHhhCCCCCCChhhHHHHHHHHh---cCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHh
Q 003668          296 ------HIIADCVKYVIRELPSSPVPASCCNALLEARR---TDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVAS  365 (804)
Q Consensus       296 ------h~vAslLK~fLReLPePLlp~~l~~~~l~a~~---~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~  365 (804)
                            .+|+.++++||++||+||+|..+|+.|+.++.   ... +..+++++.++. .||+.||..|+.|+.||+.|+.
T Consensus       100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~  178 (235)
T cd04405         100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK  178 (235)
T ss_pred             cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence                  27999999999999999999999998888876   334 889999999888 9999999999999999999999


Q ss_pred             hc-------ccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668          366 SK-------NQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG  436 (804)
Q Consensus       366 ~s-------~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~  436 (804)
                      +.       ..|+|   |++..|+|++++++.     +                   ...++..+|.|||+|+..||.
T Consensus       179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l-------------------~~~~~~~LV~Fmmd~~~~ifk  229 (235)
T cd04405         179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----L-------------------DEGLADLLVLFLMDHHQDIFK  229 (235)
T ss_pred             cCccccccccchHH---HHHHHhhhHhcCccc-----c-------------------CHHHHHHHHHHHHHcchhhhc
Confidence            94       26777   899999999999862     0                   013466899999999999996

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.60  E-value=4.6e-15  Score=136.77  Aligned_cols=97  Identities=23%  Similarity=0.388  Sum_probs=67.3

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCC----eeecCCcceeeecCCCeEEEEEec
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG----IDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~----~~l~~s~sV~~~~~Kk~~FvI~~~  161 (804)
                      |+|||.+++.+. .++|++|||||+++.|+||+++.+..|.+.    +.|..    +.+...........+.++|.|...
T Consensus         1 KeG~L~K~g~~~-~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~----I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~   75 (103)
T cd01251           1 KEGFMEKTGPKH-TEGFKKRWFTLDDRRLMYFKDPLDAFAKGE----VFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP   75 (103)
T ss_pred             CceeEEecCCCC-CCCceeEEEEEeCCEEEEECCCCCcCcCcE----EEeeccccceeEeccCCccccccccceEEEEeC
Confidence            689887665442 489999999999999999999876644321    22332    222211000001123348887765


Q ss_pred             CCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       162 ~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                         +|+|+|+|+|++||.+||+||+.++.
T Consensus        76 ---~Rty~l~a~s~~e~~~Wi~ai~~v~~  101 (103)
T cd01251          76 ---ERKFLFACETEQDRREWIAAFQNVLS  101 (103)
T ss_pred             ---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence               89999999999999999999999984

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.58  E-value=7.7e-15  Score=134.47  Aligned_cols=97  Identities=20%  Similarity=0.322  Sum_probs=69.3

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~  163 (804)
                      |+|+|||.+++.  ..++|++|||||+++.|+||+++++..+.    -.+.|..|.+...........+.+||.|...  
T Consensus         2 v~k~G~L~Kkg~--~~k~WkkRwfvL~~~~L~yyk~~~~~~~~----~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~--   73 (100)
T cd01233           2 VSKKGYLNFPEE--TNSGWTRRFVVVRRPYLHIYRSDKDPVER----GVINLSTARVEHSEDQAAMVKGPNTFAVCTK--   73 (100)
T ss_pred             cceeEEEEeeCC--CCCCcEEEEEEEECCEEEEEccCCCccEe----eEEEecccEEEEccchhhhcCCCcEEEEECC--
Confidence            689998877644  45899999999999999999998764321    2233444433322100000125688988654  


Q ss_pred             CCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          164 DGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       164 dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                       .++|+|+|+|++|+++||.||+..+
T Consensus        74 -~rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          74 -HRGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             -CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence             7899999999999999999998765

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.55  E-value=2.2e-14  Score=129.90  Aligned_cols=93  Identities=27%  Similarity=0.432  Sum_probs=71.0

Q ss_pred             EEeeeEeecCCC--CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668           86 KSGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        86 KEGyL~~~kKg~--~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~  163 (804)
                      ++|||+++.+..  ..+.|++|||||+++.|+||+++.+..+.    ..+.|.++.+...    ....++++|.|..+  
T Consensus         2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~----~~I~L~~~~v~~~----~~~~k~~~F~I~~~--   71 (96)
T cd01260           2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAE----GLIFLSGFTIESA----KEVKKKYAFKVCHP--   71 (96)
T ss_pred             ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccc----eEEEccCCEEEEc----hhcCCceEEEECCC--
Confidence            689999886532  57899999999999999999998765432    2355666554432    13347888888743  


Q ss_pred             CCcEEEEEecchhhHHHHHHHHHHH
Q 003668          164 DGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       164 dgrty~LQAdSeeE~~eWI~AI~~a  188 (804)
                      +.++|+|+|+|++++++||.||++|
T Consensus        72 ~~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          72 VYKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            3489999999999999999999864

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.53  E-value=3.6e-14  Score=128.99  Aligned_cols=90  Identities=21%  Similarity=0.328  Sum_probs=66.8

Q ss_pred             EeeeEeecCCCCCCCCceEEEEEeC--CeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCC
Q 003668           87 SGPLFISSKGIGWTSWKKRWFILTH--TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD  164 (804)
Q Consensus        87 EGyL~~~kKg~~~ksWkKRWfVL~~--~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~d  164 (804)
                      +|||.+++.+...+.|++|||||++  ..|+||+++.+..|.+    .+.|..+.+..     ...+++++|.|...   
T Consensus         2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G----~I~L~~~~~~~-----~~~~~~~~F~i~t~---   69 (95)
T cd01265           2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLG----RVDLSGAAFTY-----DPREEKGRFEIHSN---   69 (95)
T ss_pred             cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccc----eEECCccEEEc-----CCCCCCCEEEEEcC---
Confidence            6999998765447999999999984  4799999887654321    23344433322     12334678888754   


Q ss_pred             CcEEEEEecchhhHHHHHHHHHHH
Q 003668          165 GRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       165 grty~LQAdSeeE~~eWI~AI~~a  188 (804)
                      +|+|+|+|+|+++|+.||.||+.+
T Consensus        70 ~r~y~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          70 NEVIALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhh
Confidence            799999999999999999999875

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=99.52  E-value=8e-14  Score=142.17  Aligned_cols=145  Identities=14%  Similarity=0.208  Sum_probs=122.2

Q ss_pred             cHHHHHHHHHHHHcCCccCCe---eecCCCHHHHHHHHHH-HhcCC--CCC-------CCCCChhhhHHHHHHHHhhCCC
Q 003668          245 PSFLEKAIRFIEEHGVQVEGI---LRQAAYVDDVHRRIRE-FEQGK--TEF-------SPEEDAHIIADCVKYVIRELPS  311 (804)
Q Consensus       245 P~~l~~~i~~Le~~Gl~~EGI---FR~sG~~~~v~~L~~~-ld~g~--~~~-------~~~~d~h~vAslLK~fLReLPe  311 (804)
                      -.+|..|.+.|+.+|+++++|   ||..++...++.++.. ++.+.  ...       ....|+|+++++||-|||.||+
T Consensus         7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~   86 (198)
T cd04401           7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG   86 (198)
T ss_pred             HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence            347899999999999999999   9999999999998666 45542  111       1236999999999999999999


Q ss_pred             CCCCh-hhHHHHHHHHhcCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCC
Q 003668          312 SPVPA-SCCNALLEARRTDRGSRVSAMRTAILETF-PEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL  389 (804)
Q Consensus       312 PLlp~-~l~~~~l~a~~~~~~~ri~~i~~lI~~~L-P~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~  389 (804)
                      ++++. +.|..|...-+..+ .-..+++.+|...+ |+.|..++..++.+|..|+.|+..|+|+..+|+.+|||.+|..+
T Consensus        87 ~~v~~~~~Y~~F~~~E~~~~-~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~  165 (198)
T cd04401          87 SKVIWWEVYEEFKARERRSN-YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP  165 (198)
T ss_pred             CccCCHHHHHHHHHHHHhcC-CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence            99999 99999999654443 22347888776333 88899999999999999999999999999999999999999987


Q ss_pred             C
Q 003668          390 L  390 (804)
Q Consensus       390 ~  390 (804)
                      .
T Consensus       166 ~  166 (198)
T cd04401         166 T  166 (198)
T ss_pred             C
Confidence            3

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.51  E-value=4.8e-14  Score=130.67  Aligned_cols=97  Identities=21%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             EEEeeeEeecCC---CCCCCCceEEEEEeCCeeEEecCCCCC-CCCCCcceeeecCCeeecCCcceee----ecCCCeEE
Q 003668           85 FKSGPLFISSKG---IGWTSWKKRWFILTHTSLVFFRSDPSA-IPQKGSEVNLTLGGIDLNNSGSVVV----KADKKLLT  156 (804)
Q Consensus        85 ~KEGyL~~~kKg---~~~ksWkKRWfVL~~~sL~yYKd~~~~-~p~~g~e~~~~L~~~~l~~s~sV~~----~~~Kk~~F  156 (804)
                      +++|||+++.++   .+.++|++|||||+++.|.||+++.+. ..+.|   .+.|..|..........    ...+++||
T Consensus         1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG---~I~L~~~~~ve~~~~~~~~~~~~~~~~~F   77 (106)
T cd01238           1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKG---SIDLSKIKCVETVKPEKNPPIPERFKYPF   77 (106)
T ss_pred             CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcce---eEECCcceEEEEecCCcCcccccccCccE
Confidence            489999987533   345699999999999999999987653 11111   23344332211000000    11357889


Q ss_pred             EEEecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668          157 VLFPDGRDGRAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       157 vI~~~~~dgrty~LQAdSeeE~~eWI~AI~~  187 (804)
                      .|.+.   +++|+|+|+|++|+++||.||+.
T Consensus        78 ~i~t~---~r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          78 QVVHD---EGTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             EEEeC---CCeEEEEcCCHHHHHHHHHHHHh
Confidence            88875   68899999999999999999986

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.49  E-value=9.8e-14  Score=127.26  Aligned_cols=91  Identities=23%  Similarity=0.379  Sum_probs=66.3

Q ss_pred             EEeeeEeecCCC---CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceee-ec-----CCCeEE
Q 003668           86 KSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV-KA-----DKKLLT  156 (804)
Q Consensus        86 KEGyL~~~kKg~---~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~-~~-----~Kk~~F  156 (804)
                      -+|  |+.++|+   ..++|++|||+|+++.|+|||+.....|..   ..+.|..|     .+|.. ..     .+.+||
T Consensus         2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~---g~IdL~~~-----~sVk~~~~~~~~~~~~~~F   71 (101)
T cd01264           2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDD---CSIDLSKI-----RSVKAVAKKRRDRSLPKAF   71 (101)
T ss_pred             cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCCC---ceEEcccc-----eEEeeccccccccccCcEE
Confidence            478  5556666   789999999999999999999876543321   12334433     33311 11     235899


Q ss_pred             EEEecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       157 vI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      .|..+   .++|+|+|+|++++++||++|+.|+
T Consensus        72 ei~tp---~rt~~l~A~se~e~e~WI~~i~~a~  101 (101)
T cd01264          72 EIFTA---DKTYILKAKDEKNAEEWLQCLNIAV  101 (101)
T ss_pred             EEEcC---CceEEEEeCCHHHHHHHHHHHHhhC
Confidence            98765   6999999999999999999998764

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.47  E-value=3e-13  Score=128.75  Aligned_cols=98  Identities=21%  Similarity=0.492  Sum_probs=71.9

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC--
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR--  163 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~--  163 (804)
                      |+|||++++.  ..+.|++|||||+++.|+||+++.+..+    ...+.|.+|.+...    ....+++||.|.....  
T Consensus         2 k~G~L~K~~~--~~~~WkkRwfvL~~~~L~yyk~~~~~~~----~g~I~L~~~~v~~~----~~~~~~~~F~i~~~~~~~   71 (125)
T cd01252           2 REGWLLKQGG--RVKTWKRRWFILTDNCLYYFEYTTDKEP----RGIIPLENVSIREV----EDPSKPFCFELFSPSDKQ   71 (125)
T ss_pred             cEEEEEEeCC--CCCCeEeEEEEEECCEEEEEcCCCCCCc----eEEEECCCcEEEEc----ccCCCCeeEEEECCcccc
Confidence            7898886554  4589999999999999999998775432    22344555443332    1235778898776443  


Q ss_pred             ----------------CCcEEEEEecchhhHHHHHHHHHHHhccCC
Q 003668          164 ----------------DGRAFTLKAESLEDLYDWKTALENALAQAP  193 (804)
Q Consensus       164 ----------------dgrty~LQAdSeeE~~eWI~AI~~ai~~aP  193 (804)
                                      ..++|+|+|+|++|+.+||.||+.++...|
T Consensus        72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~  117 (125)
T cd01252          72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNP  117 (125)
T ss_pred             ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence                            126899999999999999999999996444

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.43  E-value=7e-13  Score=118.21  Aligned_cols=93  Identities=23%  Similarity=0.447  Sum_probs=68.3

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCC
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG  165 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dg  165 (804)
                      |+|||+++..+. .+.|++|||||+++.|.||+++.....  .+...+.+..|.+....   ....++++|.|...   .
T Consensus         1 k~G~L~kk~~~~-~~~W~kr~~~L~~~~l~~y~~~~~~~~--~~~~~i~l~~~~v~~~~---~~~~~~~~f~i~~~---~   71 (94)
T cd01250           1 KQGYLYKRSSKS-NKEWKKRWFVLKNGQLTYHHRLKDYDN--AHVKEIDLRRCTVRHNG---KQPDRRFCFEVISP---T   71 (94)
T ss_pred             CcceEEEECCCc-CCCceEEEEEEeCCeEEEEcCCccccc--ccceEEeccceEEecCc---cccCCceEEEEEcC---C
Confidence            689998866443 578999999999999999998875311  12233555555544431   11237889988765   3


Q ss_pred             cEEEEEecchhhHHHHHHHHHH
Q 003668          166 RAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       166 rty~LQAdSeeE~~eWI~AI~~  187 (804)
                      ++|+|+|+|++++.+||.||++
T Consensus        72 ~~~~f~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          72 KTWHFQADSEEERDDWISAIQE   93 (94)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc
Confidence            8899999999999999999975

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.43  E-value=8.9e-13  Score=119.03  Aligned_cols=90  Identities=16%  Similarity=0.274  Sum_probs=66.2

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCC
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG  165 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dg  165 (804)
                      ++|||.+...  ..++|++|||||+++.|.||+++.+...  ++--.+.|..|.+..      ...++++|.|...  ++
T Consensus         1 ~~G~L~K~~~--~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~--~~~G~I~L~~~~i~~------~~~~~~~F~i~~~--~~   68 (91)
T cd01247           1 TNGVLSKWTN--YINGWQDRYFVLKEGNLSYYKSEAEKSH--GCRGSIFLKKAIIAA------HEFDENRFDISVN--EN   68 (91)
T ss_pred             CceEEEEecc--ccCCCceEEEEEECCEEEEEecCccCcC--CCcEEEECcccEEEc------CCCCCCEEEEEeC--CC
Confidence            3797777665  4589999999999999999999776422  122234555554443      2244677888643  35


Q ss_pred             cEEEEEecchhhHHHHHHHHHH
Q 003668          166 RAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       166 rty~LQAdSeeE~~eWI~AI~~  187 (804)
                      ++|+|.|+|++++++||.||+.
T Consensus        69 r~~~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          69 VVWYLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             eEEEEEeCCHHHHHHHHHHHhh
Confidence            9999999999999999999975

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.39  E-value=1.8e-12  Score=119.19  Aligned_cols=92  Identities=24%  Similarity=0.331  Sum_probs=65.0

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCC------eeEEecCCCCCCCC-CCcceeeecCCeeecCCcceeeecCCCeEE
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHT------SLVFFRSDPSAIPQ-KGSEVNLTLGGIDLNNSGSVVVKADKKLLT  156 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~------sL~yYKd~~~~~p~-~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~F  156 (804)
                      |.++|||.++      ++|+||||||++.      .|.||++++..... ..+--.+.|..|.-...   .....++++|
T Consensus         2 v~k~GyL~K~------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~---~~d~k~~~~f   72 (101)
T cd01257           2 VRKSGYLRKQ------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINK---RADAKHRHLI   72 (101)
T ss_pred             ccEEEEEeEe------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEee---ccccccCeEE
Confidence            7899998886      6899999999988      69999998753111 11223355565542211   0112345777


Q ss_pred             EEEecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668          157 VLFPDGRDGRAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       157 vI~~~~~dgrty~LQAdSeeE~~eWI~AI~~  187 (804)
                      .|..+   .++|+|.|+|++|+++|+.+|..
T Consensus        73 ~i~t~---dr~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          73 ALYTR---DEYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             EEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence            77654   58999999999999999999964

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=99.39  E-value=7.6e-13  Score=121.17  Aligned_cols=97  Identities=21%  Similarity=0.292  Sum_probs=74.0

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeCCeeEE----ecCCC--CCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEE
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVF----FRSDP--SAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF  159 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~y----YKd~~--~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~  159 (804)
                      |+||||+++|++...+|.++||.+.+..-.|    +....  +..........+.|..|.++.+.    ..+|||||+|+
T Consensus         1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~----~~dRRFCFei~   76 (104)
T cd01249           1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTE----SIDKRFCFDVE   76 (104)
T ss_pred             CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccC----CccceeeEeee
Confidence            6899999999988889999999999874332    33221  10111223345778888888763    66999999999


Q ss_pred             ecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668          160 PDGRDGRAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~  187 (804)
                      ...++ .+++|||+|+.++..||.||++
T Consensus        77 ~~~~~-~~~~lQA~Se~~~~~Wi~A~dg  103 (104)
T cd01249          77 VEEKP-GVITMQALSEKDRRLWIEAMDG  103 (104)
T ss_pred             ecCCC-CeEEEEecCHHHHHHHHHhhcC
Confidence            88777 4599999999999999999976

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.39  E-value=1.1e-12  Score=121.15  Aligned_cols=90  Identities=28%  Similarity=0.523  Sum_probs=61.9

Q ss_pred             EEeeeEeecCC-------CCCCCCceEEEEEeC-CeeEEecCCC-CCCCCCCcceeeecCCeeecCCcceee---ecCCC
Q 003668           86 KSGPLFISSKG-------IGWTSWKKRWFILTH-TSLVFFRSDP-SAIPQKGSEVNLTLGGIDLNNSGSVVV---KADKK  153 (804)
Q Consensus        86 KEGyL~~~kKg-------~~~ksWkKRWfVL~~-~sL~yYKd~~-~~~p~~g~e~~~~L~~~~l~~s~sV~~---~~~Kk  153 (804)
                      ++|||++..-+       ...++|+||||||++ +.|+||++.. +..|+         +.|+++.+..|..   ...+.
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~---------G~IdL~~~~~V~~~~~~~~~~   71 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQ---------GTIDMNQCTDVVDAEARTGQK   71 (104)
T ss_pred             CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccc---------eEEEccceEEEeecccccCCc
Confidence            47999986544       357999999999985 5666666653 33332         2233333333321   23345


Q ss_pred             eEEEEEecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668          154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       154 ~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~  187 (804)
                      ++|.|.+.   +|+|+|.|+|++|+++||.+|..
T Consensus        72 ~~f~I~tp---~R~f~l~Aete~E~~~Wi~~l~~  102 (104)
T cd01236          72 FSICILTP---DKEHFIKAETKEEISWWLNMLMV  102 (104)
T ss_pred             cEEEEECC---CceEEEEeCCHHHHHHHHHHHHh
Confidence            78888765   79999999999999999999963

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.39  E-value=1.9e-12  Score=117.77  Aligned_cols=95  Identities=19%  Similarity=0.377  Sum_probs=63.4

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeC--CeeEEecCCCCCCCCCCcceeeecCCeeecCC-c-c--eeeecCCCeEEEEE
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTH--TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS-G-S--VVVKADKKLLTVLF  159 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~--~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s-~-s--V~~~~~Kk~~FvI~  159 (804)
                      .+|||++++  ...+.|++|||||++  ..|.||+++.+..|.+    .+.|..+..... . .  ......+.++|.+.
T Consensus         1 ~~G~L~K~g--~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g----~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~   74 (101)
T cd01235           1 CEGYLYKRG--ALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKG----CIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLK   74 (101)
T ss_pred             CeEEEEEcC--CCCCCccceEEEEECCCCEEEEecCCCCCccce----EEEcceeEEEeecCCCCCCCCCCCCceEEEEE
Confidence            379777655  456899999999995  4899999887654321    233443221110 0 0  00011345667665


Q ss_pred             ecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          160 PDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      ..   +++|+|+|++++++.+||.||+++|
T Consensus        75 t~---~r~~~~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          75 TS---KRTYNFLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             eC---CceEEEECCCHHHHHHHHHHHHhhC
Confidence            43   7899999999999999999999864

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.36  E-value=2.7e-12  Score=117.96  Aligned_cols=97  Identities=25%  Similarity=0.334  Sum_probs=65.7

Q ss_pred             EEeeeEee------cCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEE
Q 003668           86 KSGPLFIS------SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF  159 (804)
Q Consensus        86 KEGyL~~~------kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~  159 (804)
                      ++|||.++      +++...+.|++|||||+++.|+||+++............+.+.++.+....   ....++++|.|.
T Consensus         1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~---~~~k~~~~F~l~   77 (104)
T cd01253           1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVAS---DYTKKKHVFRLR   77 (104)
T ss_pred             CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecC---CcccCceEEEEE
Confidence            36777742      234457899999999999999999988643222222223444344332210   122455777776


Q ss_pred             ecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668          160 PDGRDGRAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~  187 (804)
                      .  .+|++|+|||+++++|..|+.||+.
T Consensus        78 ~--~~~~~~~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          78 L--PDGAEFLFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             e--cCCCEEEEECCCHHHHHHHHHHHhc
Confidence            4  4689999999999999999999975

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.35  E-value=4.9e-12  Score=112.06  Aligned_cols=91  Identities=23%  Similarity=0.390  Sum_probs=66.2

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCC
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG  165 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dg  165 (804)
                      ++|||++++.+  .+.|++|||||+++.|.||+++.....  .+...+.+..|.+..      ...+.++|.|..  .++
T Consensus         1 ~~G~L~k~~~~--~~~W~~r~~vl~~~~L~~~~~~~~~~~--~~~~~i~l~~~~~~~------~~~~~~~F~i~~--~~~   68 (91)
T cd01246           1 VEGWLLKWTNY--LKGWQKRWFVLDNGLLSYYKNKSSMRG--KPRGTILLSGAVISE------DDSDDKCFTIDT--GGD   68 (91)
T ss_pred             CeEEEEEeccc--CCCceeeEEEEECCEEEEEecCccCCC--CceEEEEeceEEEEE------CCCCCcEEEEEc--CCC
Confidence            58988877543  489999999999999999999875411  112234455554322      223467787764  356


Q ss_pred             cEEEEEecchhhHHHHHHHHHHH
Q 003668          166 RAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       166 rty~LQAdSeeE~~eWI~AI~~a  188 (804)
                      ++|+|+|+|++|+.+||.||+.|
T Consensus        69 ~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          69 KTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             CEEEEECCCHHHHHHHHHHHHhC
Confidence            99999999999999999999864

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.34  E-value=5.4e-12  Score=118.97  Aligned_cols=100  Identities=20%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             EEeeeEee------cCCC--CCCCCceEEEEEeCCeeEEecCCCCCCCC---CCcceeeecCCeeecCCcceeeecCCCe
Q 003668           86 KSGPLFIS------SKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQ---KGSEVNLTLGGIDLNNSGSVVVKADKKL  154 (804)
Q Consensus        86 KEGyL~~~------kKg~--~~ksWkKRWfVL~~~sL~yYKd~~~~~p~---~g~e~~~~L~~~~l~~s~sV~~~~~Kk~  154 (804)
                      |+|+|.+.      +|+.  +.+.|+++||||+++.|++|||+......   ...+..+.+..+....     ...+++.
T Consensus         2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~i-----a~dy~Kr   76 (117)
T cd01230           2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATR-----ASDYSKK   76 (117)
T ss_pred             CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEe-----eccccCC
Confidence            68888862      2222  36899999999999999999998642111   1112334444433222     1234444


Q ss_pred             EEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       155 ~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                      .++|.+...+|..|+|||.+++||+.||.+|+.+++
T Consensus        77 ~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~  112 (117)
T cd01230          77 PHVFRLRTADWREFLFQTSSLKELQSWIERINVVAA  112 (117)
T ss_pred             CcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            455555567899999999999999999999998874

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.32  E-value=1.8e-11  Score=109.05  Aligned_cols=101  Identities=23%  Similarity=0.415  Sum_probs=76.5

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCccee--eecCCCeEEEEEec
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV--VKADKKLLTVLFPD  161 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~--~~~~Kk~~FvI~~~  161 (804)
                      ++++|||++++  ...+.|++|||||+++.|.||+++... ....+...+.|.++.+.......  ......++|.|...
T Consensus         1 ~~~~G~L~~~~--~~~~~wk~r~~vL~~~~L~~~~~~~~~-~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~   77 (104)
T PF00169_consen    1 CIKEGWLLKKS--SSRKKWKKRYFVLRDSYLLYYKSSKDK-SDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP   77 (104)
T ss_dssp             EEEEEEEEEEE--SSSSSEEEEEEEEETTEEEEESSTTTT-TESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred             CEEEEEEEEEC--CCCCCeEEEEEEEECCEEEEEecCccc-cceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence            57999999888  345899999999999999999988741 11233455777777766543210  12357788888875


Q ss_pred             CCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       162 ~~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                        .+..|+|+|+|++++..|+.+|+.++
T Consensus        78 --~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   78 --NGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             --TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence              23699999999999999999999876

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.32  E-value=9.6e-12  Score=114.55  Aligned_cols=97  Identities=19%  Similarity=0.261  Sum_probs=64.6

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEe-CCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecC
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~-~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~  162 (804)
                      |+|+|||.+++  ...+.|++|||+|+ ++.|.||++.+.....    ..+.|..+.+..+..+.....+.++|.|....
T Consensus         1 v~k~G~L~K~g--~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~   74 (102)
T cd01241           1 VVKEGWLHKRG--EYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ   74 (102)
T ss_pred             CcEEEEEEeec--CCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence            46999777654  55699999999999 7789999886643221    12335555544432222234566778886321


Q ss_pred             ---CCCcEEEEEecchhhHHHHHHHHHHH
Q 003668          163 ---RDGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       163 ---~dgrty~LQAdSeeE~~eWI~AI~~a  188 (804)
                         ...|  +|+|+|++||++||.||+.+
T Consensus        75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          75 WTTVIER--TFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence               1234  56799999999999999875

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.31  E-value=8.1e-12  Score=116.05  Aligned_cols=95  Identities=17%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             EeeeEeecCCC--CCCCCceEEEEEeCCe-------eEEecCCCCCCCCCCcceeeecCCeeecCCcceeeec--CCCeE
Q 003668           87 SGPLFISSKGI--GWTSWKKRWFILTHTS-------LVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKA--DKKLL  155 (804)
Q Consensus        87 EGyL~~~kKg~--~~ksWkKRWfVL~~~s-------L~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~--~Kk~~  155 (804)
                      +|||.++....  +.++|++|||||+++.       |.||+++....+.    -.+.|..|.....+......  .+.+.
T Consensus         2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~----g~I~L~~~~~v~~~~~~~~~~~~~~~~   77 (108)
T cd01266           2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLE----FVIDLESCSQVDPGLLCTAGNCIFGYG   77 (108)
T ss_pred             ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccc----eEEECCccEEEcccccccccCcccceE
Confidence            79888865432  4569999999999886       5999987755332    22445544432211000011  12345


Q ss_pred             EEEEecCCCCcEEEEEecchhhHHHHHHHHHHH
Q 003668          156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       156 FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~a  188 (804)
                      |.+...   .|+|+|.|+|+++|++||.+|...
T Consensus        78 f~i~t~---~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          78 FDIETI---VRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             EEEEeC---CccEEEEECCHHHHHHHHHHHHhh
Confidence            666543   689999999999999999999764

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.21  E-value=4.1e-11  Score=109.69  Aligned_cols=78  Identities=22%  Similarity=0.234  Sum_probs=55.4

Q ss_pred             CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceee----ecCCCeEEEEEecCCCCcEEEEEec
Q 003668           98 GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV----KADKKLLTVLFPDGRDGRAFTLKAE  173 (804)
Q Consensus        98 ~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~----~~~Kk~~FvI~~~~~dgrty~LQAd  173 (804)
                      ..++|++|||+|+++.|.||+++... +         .+.|++.....|..    ...+.++|.|..+   .++|+|+|+
T Consensus        17 ~~~n~KkRwF~Lt~~~L~Y~k~~~~~-~---------~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~---~r~~yi~a~   83 (98)
T cd01244          17 KVLHFKKRYFQLTTTHLSWAKDVQCK-K---------SALIKLAAIKGTEPLSDKSFVNVDIITIVCE---DDTMQLQFE   83 (98)
T ss_pred             cCcCCceeEEEECCCEEEEECCCCCc-e---------eeeEEccceEEEEEcCCcccCCCceEEEEeC---CCeEEEECC
Confidence            34799999999999999999976521 1         22233333222211    1234578888765   589999999


Q ss_pred             chhhHHHHHHHHHHH
Q 003668          174 SLEDLYDWKTALENA  188 (804)
Q Consensus       174 SeeE~~eWI~AI~~a  188 (804)
                      +++|+++||.||+.+
T Consensus        84 s~~E~~~Wi~al~k~   98 (98)
T cd01244          84 APVEATDWLNALEKQ   98 (98)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999999863

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.19  E-value=6.9e-11  Score=112.17  Aligned_cols=102  Identities=19%  Similarity=0.282  Sum_probs=69.7

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcce-eeecCCCeEEEEEecCC-
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV-VVKADKKLLTVLFPDGR-  163 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV-~~~~~Kk~~FvI~~~~~-  163 (804)
                      ..|||.+....++.++|++|||||+++.|.||+.+.+. ....+--.+.|..|.+.....+ .+...|++.|.|..... 
T Consensus         3 ~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~-~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~   81 (122)
T cd01263           3 YHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDE-KRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPK   81 (122)
T ss_pred             cceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCcc-ccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEeccc
Confidence            57999985544567999999999999999999977653 2223334466777766554322 12335667777654211 


Q ss_pred             -------------CC--c-EEEEEecchhhHHHHHHHHHHH
Q 003668          164 -------------DG--R-AFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       164 -------------dg--r-ty~LQAdSeeE~~eWI~AI~~a  188 (804)
                                   ..  + -|+|.|+|.+|+.+|+.||+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          82 METDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             ccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence                         11  1 2678899999999999999863

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]

Probab=99.18  E-value=4.3e-11  Score=130.49  Aligned_cols=142  Identities=19%  Similarity=0.271  Sum_probs=122.9

Q ss_pred             CCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC---------------------------CCC------
Q 003668          243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK---------------------------TEF------  289 (804)
Q Consensus       243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~---------------------------~~~------  289 (804)
                      ..|.++...+.+.+.+|..++|++|.++..+..++++..-..|+                           +.+      
T Consensus        70 ~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~  149 (514)
T KOG4370|consen   70 PLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARS  149 (514)
T ss_pred             cCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHH
Confidence            46889999999999999999999999988877666665543321                           000      


Q ss_pred             --------CCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003668          290 --------SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMM  360 (804)
Q Consensus       290 --------~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L  360 (804)
                              ...+.+.+||++||.|||+||++|++.++-..|..++.... ....+.++.++. .||..||.++.+|+-|+
T Consensus       150 Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk-~Lp~cNyll~swl~lH~  228 (514)
T KOG4370|consen  150 CIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLK-ILPKCNYLLYSWLNLHK  228 (514)
T ss_pred             HhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHH-hccccchHHHHHHHHHH
Confidence                    12357899999999999999999999999999999998888 788888988775 99999999999999999


Q ss_pred             HHHHhhcccCCCCcchhhhhhcccc
Q 003668          361 QTVASSKNQNRMSTSAVAACMAPLL  385 (804)
Q Consensus       361 ~~V~~~s~~NkMt~~NLAv~FgPtL  385 (804)
                      -.|....-.|||++.||+|+..|++
T Consensus       229 d~vi~~e~~~Kln~q~i~i~lspt~  253 (514)
T KOG4370|consen  229 DKVIEEEYCLKLNKQQIFINLSPTE  253 (514)
T ss_pred             HHHHHHHHHhhcchhheeeecchHH
Confidence            9999999999999999999999988

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.17  E-value=6e-11  Score=108.50  Aligned_cols=93  Identities=17%  Similarity=0.191  Sum_probs=65.3

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeC----CeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEec
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTH----TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~----~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~  161 (804)
                      +.|||.++.++. .++|++|||+|.+    +.|+||++.++..|.+    .+.|..+.+....  .....+.+||.+...
T Consensus         1 ~~G~l~K~g~~~-~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~g----li~l~~~~V~~v~--ds~~~r~~cFel~~~   73 (98)
T cd01245           1 KKGNLLKRTKSV-TKLWKTLYFALILDGSRSHESLLSSPKKTKPIG----LIDLSDAYLYPVH--DSLFGRPNCFQIVER   73 (98)
T ss_pred             CCCccccCCCCc-ccccceeEEEEecCCCCceEEEEcCCCCCCccc----eeeccccEEEEcc--ccccCCCeEEEEecC
Confidence            358877665532 6999999999987    8999999888764421    1334444443321  011267799999765


Q ss_pred             CCCCcEEEEEecchhhHHHHHHHHHH
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       162 ~~dgrty~LQAdSeeE~~eWI~AI~~  187 (804)
                      .. +.+|+++|++ +++++||.+|+.
T Consensus        74 ~~-~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          74 AL-PTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             CC-CeEEEEeCCH-HHHHHHHHHHhc
Confidence            22 2689999999 999999999975

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=9e-11  Score=122.29  Aligned_cols=103  Identities=23%  Similarity=0.456  Sum_probs=75.1

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~  163 (804)
                      .-+||||++++.+ ..++||+|||+|++++|+||.--.+.-|.+    .++|....|+..    +...|.+||.+.....
T Consensus       260 pdREGWLlKlgg~-rvktWKrRWFiLtdNCLYYFe~tTDKEPrG----IIpLeNlsir~V----edP~kP~cfEly~ps~  330 (395)
T KOG0930|consen  260 PDREGWLLKLGGN-RVKTWKRRWFILTDNCLYYFEYTTDKEPRG----IIPLENLSIREV----EDPKKPNCFELYIPSN  330 (395)
T ss_pred             ccccceeeeecCC-cccchhheeEEeecceeeeeeeccCCCCCc----ceeccccceeec----cCCCCCCeEEEecCCC
Confidence            3589999998543 569999999999999999987555443322    133444444432    3457889998875433


Q ss_pred             ------------CCc-------EEEEEecchhhHHHHHHHHHHHhccCCCC
Q 003668          164 ------------DGR-------AFTLKAESLEDLYDWKTALENALAQAPST  195 (804)
Q Consensus       164 ------------dgr-------ty~LQAdSeeE~~eWI~AI~~ai~~aP~~  195 (804)
                                  +||       +|.++|.+.+++.+||.+|+.++...|..
T Consensus       331 ~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy  381 (395)
T KOG0930|consen  331 KGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPFY  381 (395)
T ss_pred             CcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcHH
Confidence                        333       79999999999999999999999665643

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.12  E-value=1.1e-10  Score=110.58  Aligned_cols=99  Identities=22%  Similarity=0.369  Sum_probs=57.9

Q ss_pred             EEeeeEee------cCCC--CCCCCceEEEEEeCCeeEEecCCCCCC---CC--CC-----cceeeecCCeeecCCccee
Q 003668           86 KSGPLFIS------SKGI--GWTSWKKRWFILTHTSLVFFRSDPSAI---PQ--KG-----SEVNLTLGGIDLNNSGSVV  147 (804)
Q Consensus        86 KEGyL~~~------kKg~--~~ksWkKRWfVL~~~sL~yYKd~~~~~---p~--~g-----~e~~~~L~~~~l~~s~sV~  147 (804)
                      |||||.+.      .|+.  ..++|+..|+||++..|.|||+.....   +.  ..     +...+.|..+....+    
T Consensus         2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a----   77 (119)
T PF15410_consen    2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIA----   77 (119)
T ss_dssp             -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEE----
T ss_pred             ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeC----
Confidence            79998862      3344  678999999999999999999943211   10  01     112244444433322    


Q ss_pred             eecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          148 VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       148 ~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                       .+++|..++|.+...+|..|+|||.|+++|.+||.+|.-+.
T Consensus        78 -~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen   78 -SDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA  118 (119)
T ss_dssp             -TTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred             -cccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence             33433334444446689999999999999999999998654

>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]

Probab=99.12  E-value=9.7e-11  Score=137.77  Aligned_cols=145  Identities=21%  Similarity=0.300  Sum_probs=130.2

Q ss_pred             CCcHHHHHHHHHHHHcCCccCCeee-cCCCHHHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHhhCCCC-CCChhh
Q 003668          243 GTPSFLEKAIRFIEEHGVQVEGILR-QAAYVDDVHRRIREFEQGKTEF--SPEEDAHIIADCVKYVIRELPSS-PVPASC  318 (804)
Q Consensus       243 ~VP~~l~~~i~~Le~~Gl~~EGIFR-~sG~~~~v~~L~~~ld~g~~~~--~~~~d~h~vAslLK~fLReLPeP-Llp~~l  318 (804)
                      .||.++..|+.+++.+|+..+|||| ++|....|..++.++.+|....  ..+.+... |.+||.|+|.|.+| +|+++.
T Consensus       217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~  295 (640)
T KOG3565|consen  217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED  295 (640)
T ss_pred             cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence            5899999999999999999999999 8999999999999999883221  22334555 99999999999999 999999


Q ss_pred             HHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCC
Q 003668          319 CNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL  389 (804)
Q Consensus       319 ~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~  389 (804)
                      +..++.+....+ .+++..++.++. .+|..+..++.+|+.|+...+..+..|.|++.|+|+||||+++..+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~  366 (640)
T KOG3565|consen  296 FGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP  366 (640)
T ss_pred             ccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence            999999998888 677788888887 8999999999999999999999999999999999999999997655

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.08  E-value=5.2e-10  Score=103.03  Aligned_cols=91  Identities=20%  Similarity=0.333  Sum_probs=71.1

Q ss_pred             cCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCC-CcEEEEEe
Q 003668           94 SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD-GRAFTLKA  172 (804)
Q Consensus        94 kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~d-grty~LQA  172 (804)
                      -++...+.||+|||+|++..|+|||++.+..  +.+...+.|.+|.+.+...|   ..++|++.+..+..+ .++|+|.|
T Consensus        12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~c   86 (106)
T cd01237          12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRC   86 (106)
T ss_pred             cchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEEC
Confidence            3445578899999999999999999877643  45667788999998875322   345687777655333 37999999


Q ss_pred             cchhhHHHHHHHHHHHh
Q 003668          173 ESLEDLYDWKTALENAL  189 (804)
Q Consensus       173 dSeeE~~eWI~AI~~ai  189 (804)
                      +|++++..||.|.+-|.
T Consensus        87 dsEeqya~Wmaa~rlas  103 (106)
T cd01237          87 DNEKQYAKWMAACRLAS  103 (106)
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999998764

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.02  E-value=1.2e-09  Score=102.48  Aligned_cols=98  Identities=24%  Similarity=0.424  Sum_probs=51.0

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEe-CCeeEEecCCCCCC-----------CCCCcceeeecCCeeecCCc--ceeeecC
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAI-----------PQKGSEVNLTLGGIDLNNSG--SVVVKAD  151 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~-~~sL~yYKd~~~~~-----------p~~g~e~~~~L~~~~l~~s~--sV~~~~~  151 (804)
                      |+|||++.... .++.|++|||+|+ ++.|.|||.+.+..           ....+..........+....  .. ....
T Consensus         1 k~G~l~K~~~~-~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   78 (112)
T PF15413_consen    1 KEGYLYKWGNK-FGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNP-FGEI   78 (112)
T ss_dssp             EEEEEEE--TT-S-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T---SS-
T ss_pred             CCceEEEecCC-CCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCc-ccCc
Confidence            68999987766 4689999999999 99999999832211           00001111100000000000  00 0111


Q ss_pred             CCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHH
Q 003668          152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       152 Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~a  188 (804)
                      -...+.+.+.   .++|.|.|++.+|+.+||+||+.|
T Consensus        79 ~~~~~~i~T~---~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   79 HLKVFSIFTP---TKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             SSEEEEEE-S---S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             CCCCcEEECC---CcEEEEEECCHHHHHHHHHHHHhC
Confidence            2223344333   589999999999999999999865

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=98.98  E-value=3.5e-09  Score=97.36  Aligned_cols=98  Identities=13%  Similarity=0.245  Sum_probs=69.5

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCC-CCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecC
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~-p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~  162 (804)
                      .+|||||.+...+.  +.|+.|||.|-++.|.|++...... +.....-.+.+.++.+...    .....+++|.|... 
T Consensus         2 ~ikeG~L~K~~~~~--~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~----~~~~~~~~F~I~~~-   74 (101)
T cd01219           2 LLKEGSVLKISSTT--EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEG----DNLERPHSFLVSGK-   74 (101)
T ss_pred             cccceEEEEEecCC--CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeC----CCCCcCceEEEecC-
Confidence            57999887766554  7999999999999999998543211 1011112255555555432    12346778888765 


Q ss_pred             CCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          163 RDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       163 ~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                        .++|+|+|+|++|+.+||.||+.++.
T Consensus        75 --~rsf~l~A~s~eEk~~W~~ai~~~i~  100 (101)
T cd01219          75 --QRCLELQARTQKEKNDWVQAIFSIID  100 (101)
T ss_pred             --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence              48999999999999999999999873

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>smart00233 PH Pleckstrin homology domain

Probab=98.94  E-value=8.9e-09  Score=89.89  Aligned_cols=100  Identities=30%  Similarity=0.494  Sum_probs=70.5

Q ss_pred             EEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCC
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD  164 (804)
Q Consensus        85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~d  164 (804)
                      .++|||++...+ ....|+++||+|.++.|.||++...... ......+.+..+.+...... .....+++|.|...  +
T Consensus         2 ~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~~~~~i~l~~~~v~~~~~~-~~~~~~~~f~l~~~--~   76 (102)
T smart00233        2 IKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YKPKGSIDLSGITVREAPDP-DSAKKPHCFEIKTA--D   76 (102)
T ss_pred             ceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CCCceEEECCcCEEEeCCCC-ccCCCceEEEEEec--C
Confidence            589999987764 3478999999999999999998764311 22223355555544433110 00135678888764  3


Q ss_pred             CcEEEEEecchhhHHHHHHHHHHHh
Q 003668          165 GRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       165 grty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      +..|+|+|+|++++..|+.+|+.++
T Consensus        77 ~~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       77 RRSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHhh
Confidence            3589999999999999999998765

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=98.93  E-value=5.1e-09  Score=99.52  Aligned_cols=82  Identities=23%  Similarity=0.427  Sum_probs=55.8

Q ss_pred             CCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCc--------ceeeecCCCeEEEEEecCCCCcEEEEEe
Q 003668          101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSG--------SVVVKADKKLLTVLFPDGRDGRAFTLKA  172 (804)
Q Consensus       101 sWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~--------sV~~~~~Kk~~FvI~~~~~dgrty~LQA  172 (804)
                      .|++|||||+++.|.||+++.+..+..  .+.++ ....+....        .+.....+++.|.|...   .|+|.|.|
T Consensus        32 ~w~kRWFvlr~s~L~Y~~~~~~~~~~~--vil~D-~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~---~R~~~l~a  105 (121)
T cd01254          32 RWQKRWFIVKESFLAYMDDPSSAQILD--VILFD-VDFKVNGGGKEDISLAVELKDITGLRHGLKITNS---NRSLKLKC  105 (121)
T ss_pred             CCcceeEEEeCCEEEEEcCCCCCceee--EEEEc-CCccEEeCCcccccccccccccCCCceEEEEEcC---CcEEEEEe
Confidence            799999999999999999887653311  11111 111111110        01122456777777654   79999999


Q ss_pred             cchhhHHHHHHHHHHH
Q 003668          173 ESLEDLYDWKTALENA  188 (804)
Q Consensus       173 dSeeE~~eWI~AI~~a  188 (804)
                      .|+.++++|+++|+.|
T Consensus       106 ~s~~~~~~Wi~~i~~a  121 (121)
T cd01254         106 KSSRKLKQWMASIEDA  121 (121)
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            9999999999999864

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15409 PH_8: Pleckstrin homology domain

Probab=98.85  E-value=1.3e-08  Score=91.39  Aligned_cols=86  Identities=24%  Similarity=0.426  Sum_probs=60.0

Q ss_pred             eeeEeecCCCCCCCCceEEEEE--eCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCC
Q 003668           88 GPLFISSKGIGWTSWKKRWFIL--THTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG  165 (804)
Q Consensus        88 GyL~~~kKg~~~ksWkKRWfVL--~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dg  165 (804)
                      |||.+.++.. .+.|+||||||  ..+.|.||+++.+.. .+ +.  ++++.+.+..       ..+..++.|..   .+
T Consensus         1 G~llKkrr~~-lqG~~kRyFvL~~~~G~LsYy~~~~~~~-~r-Gs--i~v~~a~is~-------~~~~~~I~ids---g~   65 (89)
T PF15409_consen    1 GWLLKKRRKP-LQGWHKRYFVLDFEKGTLSYYRNQNSGK-LR-GS--IDVSLAVISA-------NKKSRRIDIDS---GD   65 (89)
T ss_pred             Ccceeecccc-CCCceeEEEEEEcCCcEEEEEecCCCCe-eE-eE--EEccceEEEe-------cCCCCEEEEEc---CC
Confidence            7888766554 58999999999  899999999876541 11 11  2222222221       13444555543   36


Q ss_pred             cEEEEEecchhhHHHHHHHHHHH
Q 003668          166 RAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       166 rty~LQAdSeeE~~eWI~AI~~a  188 (804)
                      .+|.|.|.++++.+.|+.||+.+
T Consensus        66 ~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   66 EIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhc
Confidence            79999999999999999999864

>cd00821 PH Pleckstrin homology (PH) domain

Probab=98.72  E-value=5e-08  Score=84.36  Aligned_cols=95  Identities=27%  Similarity=0.525  Sum_probs=65.5

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCC
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG  165 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dg  165 (804)
                      ++|||++...+. ...|+++||+|.++.|.+|+...... ...+...+.+..+.+....   ......++|.|...  .+
T Consensus         1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~---~~~~~~~~f~i~~~--~~   73 (96)
T cd00821           1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSGAEVEESP---DDSGRKNCFEIRTP--DG   73 (96)
T ss_pred             CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCCCEEEECC---CcCCCCcEEEEecC--CC
Confidence            479888766553 46899999999999999998776421 1112233444444443321   01124678888764  33


Q ss_pred             cEEEEEecchhhHHHHHHHHHH
Q 003668          166 RAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       166 rty~LQAdSeeE~~eWI~AI~~  187 (804)
                      +.|+|+|+|++++..|+.+|+.
T Consensus        74 ~~~~~~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          74 RSYLLQAESEEEREEWIEALQS   95 (96)
T ss_pred             cEEEEEeCCHHHHHHHHHHHhc
Confidence            8999999999999999999975

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=98.70  E-value=1.3e-07  Score=82.49  Aligned_cols=96  Identities=25%  Similarity=0.442  Sum_probs=66.8

Q ss_pred             EeeeEeecCCC--CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCC
Q 003668           87 SGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD  164 (804)
Q Consensus        87 EGyL~~~kKg~--~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~d  164 (804)
                      +|||.+.....  ....|++|||+|.+..|.||+++.......   ..+.+..+.+....   ....++++|.|......
T Consensus         2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~---~~~~~~~~F~i~~~~~~   75 (99)
T cd00900           2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDP---DGSDDPNCFAIVTKDRG   75 (99)
T ss_pred             ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECC---CCCCCCceEEEECCCCC
Confidence            68777766554  257999999999999999999887543211   12444444433221   01135788888754223


Q ss_pred             CcEEEEEecchhhHHHHHHHHHHH
Q 003668          165 GRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       165 grty~LQAdSeeE~~eWI~AI~~a  188 (804)
                      .+.|+|+|++++++..|+.||+.+
T Consensus        76 ~~~~~~~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          76 RRVFVFQADSEEEAQEWVEALQQA   99 (99)
T ss_pred             cEEEEEEcCCHHHHHHHHHHHhcC
Confidence            689999999999999999999863

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.69  E-value=1.4e-09  Score=130.89  Aligned_cols=166  Identities=16%  Similarity=0.237  Sum_probs=113.6

Q ss_pred             eecCCCchhhhccccccccccccceeeccC-CCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcCCCCc
Q 003668            5 QIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAGNA   83 (804)
Q Consensus         5 ~~~~~~~~~~~~d~~~~~~~l~~~iq~tR~-fe~tr~~~e~l~~~~~~m~~~p~~~~~s~~pp~~~~~p~~~~~~~~~~~   83 (804)
                      -||++|+ .+.+.++||+.++.-+||.+|. ++..++.++..   +......-.........+..++...      ....
T Consensus       204 ~fF~~g~-~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~---~q~l~~~~~~~~~~~~~~~~~~~~~------~~~~  273 (785)
T KOG0521|consen  204 NFFKQGE-DLLSQMDPYIKKVATYVQQLREESDAEQRAMEQR---YQELRSASNLESRPKSDSASPSGGN------LKLG  273 (785)
T ss_pred             chhcccH-hHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhH---HHHHHHHhhhhhhcccccccccccc------ccch
Confidence            5899997 8999999999999999999999 87777766644   2222111000000000000011000      0012


Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~  163 (804)
                      ..+.||||++... ..+.|+||||-..++.+.|+..-.....    .....|+.|.++..   ....++++||.|+..  
T Consensus       274 ~~~~~~l~~k~~~-~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~---~~~~drr~CF~iiS~--  343 (785)
T KOG0521|consen  274 YRMEGYLRKKASN-ASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPD---AEQRDRRFCFEIISP--  343 (785)
T ss_pred             hhhhhhhhhhccc-chhhHHhhhhhhhccccccccccccccc----cccccchhccccCC---cccccceeeEEEecC--
Confidence            4577777765554 4689999999999999998876544321    35577888887775   234589999998873  


Q ss_pred             CCcEEEEEecchhhHHHHHHHHHHHhcc
Q 003668          164 DGRAFTLKAESLEDLYDWKTALENALAQ  191 (804)
Q Consensus       164 dgrty~LQAdSeeE~~eWI~AI~~ai~~  191 (804)
                       .++|+|||+++.+..+||.+|++.+..
T Consensus       344 -tks~~lQAes~~d~~~Wi~~i~nsi~s  370 (785)
T KOG0521|consen  344 -TKSYLLQAESEKDCQDWISALQNSILS  370 (785)
T ss_pred             -CcceEEecCchhHHHHHHHHHHHHHHH
Confidence             688999999999999999999998753

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=98.62  E-value=2.5e-07  Score=85.08  Aligned_cols=97  Identities=20%  Similarity=0.228  Sum_probs=62.9

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~  163 (804)
                      .++||+|.+..++.   .|.|+||.+.+ .|+|+.............-.+.|.++.+....   ......+||.|..+  
T Consensus         2 ~ikEG~L~K~~~k~---~~~R~~FLFnD-~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~---~~~~~~~~F~I~~~--   72 (99)
T cd01220           2 FIRQGCLLKLSKKG---LQQRMFFLFSD-LLLYTSKSPTDQNSFRILGHLPLRGMLTEESE---HEWGVPHCFTIFGG--   72 (99)
T ss_pred             eeeEEEEEEEeCCC---CceEEEEEccc-eEEEEEeecCCCceEEEEEEEEcCceEEeecc---CCcCCceeEEEEcC--
Confidence            68999998876543   57766666665 45555432211101111223556666655431   11245789999855  


Q ss_pred             CCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          164 DGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       164 dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                       .+.|+|+|.|++|+.+||.+|+.+|.
T Consensus        73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          73 -QCAITVAASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence             68899999999999999999999873

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=98.61  E-value=2.2e-07  Score=83.89  Aligned_cols=99  Identities=29%  Similarity=0.440  Sum_probs=73.8

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecC-
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG-  162 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~-  162 (804)
                      |++.|||-+..-+.....=|.|||||+..+|+|||+..+..+    ...+.|.++.++....  .-..+++||.+.-.. 
T Consensus         1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~----kyilpLdnLk~Rdve~--gf~sk~~~FeLfnpd~   74 (110)
T cd01256           1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEK----KYMLPLDGLKLRDIEG--GFMSRNHKFALFYPDG   74 (110)
T ss_pred             CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccc----cceeeccccEEEeecc--cccCCCcEEEEEcCcc
Confidence            578999999887765555699999999999999999876533    2346677776665421  014678999887443 


Q ss_pred             ----CCCcEEEEEecchhhHHHHHHHHHHH
Q 003668          163 ----RDGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       163 ----~dgrty~LQAdSeeE~~eWI~AI~~a  188 (804)
                          .+-++.-|.|++++++..|...+-.|
T Consensus        75 rnvykd~k~lel~~~~~e~vdswkasflra  104 (110)
T cd01256          75 RNVYKDYKQLELGCETLEEVDSWKASFLRA  104 (110)
T ss_pred             cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence                23468899999999999999887554

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=98.51  E-value=1.2e-07  Score=86.15  Aligned_cols=99  Identities=19%  Similarity=0.354  Sum_probs=66.8

Q ss_pred             EEEeeeEeecCCCCCCCCceEEEEEeCCee-----EEecCCCCCCCCCCcceeeecCCeeecCCccee-------eecCC
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSL-----VFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-------VKADK  152 (804)
Q Consensus        85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL-----~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~-------~~~~K  152 (804)
                      .++|||++.++. .+++|+||||+|++-+-     .-|+.++..     |...+.|.+.++.-.....       .-...
T Consensus         3 k~sGyL~k~Gg~-~~KkWKKRwFvL~qvsQYtfamcsy~ekks~-----P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg   76 (117)
T cd01234           3 KHCGYLYAIGKN-VWKKWKKRFFVLVQVSQYTFAMCSYREKKAE-----PTEFIQLDGYTVDYMPESDPDPNSELSLQGG   76 (117)
T ss_pred             ceeEEEEeccch-hhhhhheeEEEEEchhHHHHHHHhhhhhcCC-----chhheeecceEEeccCCCCCCcccccccccc
Confidence            489988877654 47999999999997642     225544322     2233556666655543332       11245


Q ss_pred             CeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhccC
Q 003668          153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA  192 (804)
Q Consensus       153 k~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~a  192 (804)
                      +++|..+   +.|.+..|..++|.|+..|++||=.|.+++
T Consensus        77 ~~ff~av---kegd~~~fa~~de~~r~lwvqa~yratgqs  113 (117)
T cd01234          77 RHFFNAV---KEGDELKFATDDENERHLWVQAMYRATGQS  113 (117)
T ss_pred             hhhhhee---ccCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence            6666544   347889999999999999999999888654

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=98.41  E-value=2e-07  Score=107.25  Aligned_cols=165  Identities=14%  Similarity=0.149  Sum_probs=136.2

Q ss_pred             CCCCCccccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHH----HHHHHHH-hcCCCCCCCCCChhhh
Q 003668          224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDV----HRRIREF-EQGKTEFSPEEDAHII  298 (804)
Q Consensus       224 ~~k~~vFGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v----~~L~~~l-d~g~~~~~~~~d~h~v  298 (804)
                      ..+...||+||+..+.+++.+|..+......|+..+..++++||..-...-+    ......+ ..|.....+...+|++
T Consensus       411 ~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~ta  490 (741)
T KOG4724|consen  411 ELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHTA  490 (741)
T ss_pred             hhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchHH
Confidence            3456789999999999999999998888889999999999999984332222    2222222 3355555666799999


Q ss_pred             HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHH--------HHHhcCChhHHHHHHHHHHHHHHHHhhccc
Q 003668          299 ADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRT--------AILETFPEPNRKLLQRILMMMQTVASSKNQ  369 (804)
Q Consensus       299 AslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~--------lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~  369 (804)
                      ++++|.|+|.+|..++..+.+.+++++....+ +++.++++.        .. .+.|..+..+....+.-...+..++..
T Consensus       491 asv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~-~~~Prg~s~~~shsvf~~~i~S~nse~  569 (741)
T KOG4724|consen  491 ASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVR-DHVPRGGSNVRKHSVFAGRIVSENSEE  569 (741)
T ss_pred             HHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccc-cCCCCCcccccccccccceeccccccc
Confidence            99999999999999999999999999998888 789999987        44 588999898888888888888999999


Q ss_pred             CCCCcchhhhhhcccccCCC
Q 003668          370 NRMSTSAVAACMAPLLLRPL  389 (804)
Q Consensus       370 NkMt~~NLAv~FgPtLlrp~  389 (804)
                      +.|+..|++.|..|+++.-.
T Consensus       570 ~s~dsSn~~~csrpn~~tvd  589 (741)
T KOG4724|consen  570 TSNDSSNPGFCSRPNALTVD  589 (741)
T ss_pred             ccccccccCCCCCccccchh
Confidence            99999999999999997643

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=98.35  E-value=1e-06  Score=81.67  Aligned_cols=101  Identities=25%  Similarity=0.344  Sum_probs=61.4

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecC--CcceeeecCCCeEEEEEecCC
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNN--SGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~--s~sV~~~~~Kk~~FvI~~~~~  163 (804)
                      .+|+||+++-|.  ++|||+||+|+..-|+|+-..+...+. .-..-..+.+..|-.  ...-..+.--.|||.|.+...
T Consensus         2 ~~g~LylK~~gk--KsWKk~~f~LR~SGLYy~~Kgksk~sr-dL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~   78 (114)
T cd01259           2 MEGPLYLKADGK--KSWKKYYFVLRSSGLYYFPKEKTKNTR-DLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD   78 (114)
T ss_pred             ccceEEEccCCC--ccceEEEEEEeCCeeEEccCCCcCCHH-HHHHHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence            479999988665  899999999999999887544322211 000001111111110  000011223457888876432


Q ss_pred             C----CcEEEEEecchhhHHHHHHHHHHHh
Q 003668          164 D----GRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       164 d----grty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      .    --..+|||++++.+..||.||+=+-
T Consensus        79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K  108 (114)
T cd01259          79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK  108 (114)
T ss_pred             CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence            1    1357899999999999999998554

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=98.26  E-value=9.5e-06  Score=76.31  Aligned_cols=104  Identities=13%  Similarity=0.147  Sum_probs=71.6

Q ss_pred             EEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCC--Ccceeeec--CCeeecCCcce----eeecCCCeEE
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK--GSEVNLTL--GGIDLNNSGSV----VVKADKKLLT  156 (804)
Q Consensus        85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~--g~e~~~~L--~~~~l~~s~sV----~~~~~Kk~~F  156 (804)
                      ..||||.+.+++...+.|.++|+|+.+..|+||..+.+...+.  .+...+.+  +.+.++..+..    ..+.+-.+.|
T Consensus         3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If   82 (122)
T cd01243           3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF   82 (122)
T ss_pred             cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence            3799999888876667999999999999999998665432222  22343444  23444322211    1234455667


Q ss_pred             EEEec----CCCCcEEEEEecchhhHHHHHHHHHHH
Q 003668          157 VLFPD----GRDGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       157 vI~~~----~~dgrty~LQAdSeeE~~eWI~AI~~a  188 (804)
                      .|+..    ..++.+.+|-|+++.|.+.|+.||.+.
T Consensus        83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence            77752    234678999999999999999999864

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=98.11  E-value=2.8e-05  Score=88.13  Aligned_cols=145  Identities=14%  Similarity=0.227  Sum_probs=118.3

Q ss_pred             cHHHHHHHHHHHHcCCccCCee---ecCCCHHHHHHHHHHH-hcCCCC--C--------CCCCChhhhHHHHHHHHhhCC
Q 003668          245 PSFLEKAIRFIEEHGVQVEGIL---RQAAYVDDVHRRIREF-EQGKTE--F--------SPEEDAHIIADCVKYVIRELP  310 (804)
Q Consensus       245 P~~l~~~i~~Le~~Gl~~EGIF---R~sG~~~~v~~L~~~l-d~g~~~--~--------~~~~d~h~vAslLK~fLReLP  310 (804)
                      =.+|+.|.+.|..+|+++++||   |-.-+...++.+...+ ..+...  .        ....++|+++++||-.+..||
T Consensus         9 ~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp   88 (420)
T PF08101_consen    9 KDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLP   88 (420)
T ss_pred             HHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcC
Confidence            3478899999999999999998   6777888888877765 443211  0        124599999999999999999


Q ss_pred             CCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCC
Q 003668          311 SSPVPASCCNALLEARRTDRGSRVSAMRTAILETFP-EPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL  389 (804)
Q Consensus       311 ePLlp~~l~~~~l~a~~~~~~~ri~~i~~lI~~~LP-~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~  389 (804)
                      ..+++.+.|..|...-+..+ ....++..+|-..|| +.+..++.-++.+|..|+.|+..|+|+..-|+-.+|+-+|-..
T Consensus        89 ~gvVgW~~Y~~Fk~~E~~~~-yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~  167 (420)
T PF08101_consen   89 GGVVGWDSYEEFKRREREAG-YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHP  167 (420)
T ss_pred             CCccccHHHHHHHHHHhhcC-CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCC
Confidence            99999999999987755444 334566666665775 6667899999999999999999999999999999999999876


Q ss_pred             C
Q 003668          390 L  390 (804)
Q Consensus       390 ~  390 (804)
                      .
T Consensus       168 ~  168 (420)
T PF08101_consen  168 D  168 (420)
T ss_pred             C
Confidence            4

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=98.09  E-value=3.2e-05  Score=71.84  Aligned_cols=102  Identities=12%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             EEeeeEeecCCCC--CCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCC-eeecCCcce----eeecCCCeEEEE
Q 003668           86 KSGPLFISSKGIG--WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG-IDLNNSGSV----VVKADKKLLTVL  158 (804)
Q Consensus        86 KEGyL~~~kKg~~--~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~-~~l~~s~sV----~~~~~Kk~~FvI  158 (804)
                      .||||-+.+.+..  .+.|++.|+|+.+..|++|..+.+.... .+...+.++. +.++..+..    ....+-.+.|.|
T Consensus         2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~-~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I   80 (112)
T cd01242           2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENS-TPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI   80 (112)
T ss_pred             cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCC-CcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence            5898887666443  3589999999999999999976643211 1233333332 222221111    123455567888


Q ss_pred             EecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          159 FPDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       159 ~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      +.. ..+++.+|-|+++.|.+.|+.||...|
T Consensus        81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~  110 (112)
T cd01242          81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKI  110 (112)
T ss_pred             EeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence            764 346999999999999999999999877

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.08  E-value=3.5e-06  Score=90.91  Aligned_cols=101  Identities=21%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             ceEEEeeeEeecCCCCCCCCceEEEEEe-CCeeEEecCCCCCC-CCCCcceeeecCCeeecCCcceeeecCCCeEEEEEe
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP  160 (804)
Q Consensus        83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~-~~sL~yYKd~~~~~-p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~  160 (804)
                      .|++||||.  ++|-..++|+.|||+|. ++.|.-|+.++... +...+--.+.++.|.+..     ...-|.+.|+|.+
T Consensus        14 ~vvkEgWlh--KrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~-----~erPrPntFiiRc   86 (516)
T KOG0690|consen   14 DVVKEGWLH--KRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMK-----TERPRPNTFIIRC   86 (516)
T ss_pred             hhHHhhhHh--hcchhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhh-----ccCCCCceEEEEe
Confidence            389999555  55555699999999996 55888888765432 212222224444554433     3445666676654


Q ss_pred             -cCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          161 -DGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       161 -~~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                       ....-..-+|.++|++++++|+.||+.+..
T Consensus        87 LQWTTVIERTF~ves~~eRq~W~~AIq~vsn  117 (516)
T KOG0690|consen   87 LQWTTVIERTFYVESAEERQEWIEAIQAVSN  117 (516)
T ss_pred             eeeeeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence             233345679999999999999999998653

>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.93  E-value=1.3e-05  Score=95.56  Aligned_cols=107  Identities=19%  Similarity=0.288  Sum_probs=76.6

Q ss_pred             ceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCccee-eecCCCeEEEEEe-
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-VKADKKLLTVLFP-  160 (804)
Q Consensus        83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~-~~~~Kk~~FvI~~-  160 (804)
                      .|...|||++-.-+.+...|+||||+|.++.+.|+|.+.+.. .+++.-.+.|..|.-.....+. +.-.+.+.|.|.+ 
T Consensus       989 dVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEk-rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~ 1067 (1116)
T KOG3640|consen  989 DVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEK-RKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVW 1067 (1116)
T ss_pred             ceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhc-ccCcceeeehhhhhccccccchhhhccCCceeEEEee
Confidence            477789999877666667899999999999999999877664 4555556777777765554442 1123455566652 


Q ss_pred             ----cCCC-----Cc-EEEEEecchhhHHHHHHHHHHHhc
Q 003668          161 ----DGRD-----GR-AFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       161 ----~~~d-----gr-ty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                          .+.+     -| ...|.|++.++++.|+.+|..++.
T Consensus      1068 rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1068 RPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred             cccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence                0000     11 478999999999999999998873

>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]

Probab=97.72  E-value=7.7e-05  Score=84.51  Aligned_cols=107  Identities=22%  Similarity=0.292  Sum_probs=61.6

Q ss_pred             CCceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCc-ceeeecCCeeecCCcceeeecCCCeEEEEE
Q 003668           81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGS-EVNLTLGGIDLNNSGSVVVKADKKLLTVLF  159 (804)
Q Consensus        81 ~~~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~-e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~  159 (804)
                      .+...++|+||++..|.  |+|||+||||+..-|+|+-..+...+..-. -..+.-..+-....+.-.-+.--.++|.|.
T Consensus       314 ~~~pei~GfL~~K~dgk--KsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K  391 (622)
T KOG3751|consen  314 SSPPEIQGFLYLKEDGK--KSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIK  391 (622)
T ss_pred             CCCccccceeeeccccc--ccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEee
Confidence            34568999999887765  899999999999999987544332221100 000111111111110000111123556666


Q ss_pred             ecC-CCC-c-EEEEEecchhhHHHHHHHHHHHh
Q 003668          160 PDG-RDG-R-AFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       160 ~~~-~dg-r-ty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      +.. +.. + .-+|||+++..+..|+.||+=+-
T Consensus       392 ~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K  424 (622)
T KOG3751|consen  392 PNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK  424 (622)
T ss_pred             eccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence            532 111 1 35899999999999999998543

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=97.70  E-value=0.00032  Score=65.20  Aligned_cols=97  Identities=15%  Similarity=0.192  Sum_probs=66.6

Q ss_pred             ceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecC
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~  162 (804)
                      ..++||-|.+.-+    +..+.|||.|=.+.|+|-+-.... ......-.+.|.++.+....   +....++.|.|... 
T Consensus         3 ~li~eG~L~K~~r----k~~~~R~ffLFnD~LvY~~~~~~~-~~~~~~~~i~L~~~~v~~~~---d~~~~~n~f~I~~~-   73 (104)
T cd01218           3 VLVGEGVLTKMCR----KKPKQRQFFLFNDILVYGNIVISK-KKYNKQHILPLEGVQVESIE---DDGIERNGWIIKTP-   73 (104)
T ss_pred             EEEecCcEEEeec----CCCceEEEEEecCEEEEEEeecCC-ceeeEeeEEEccceEEEecC---CcccccceEEEecC-
Confidence            3789998876553    346779999999999985421110 01111123567777665431   22234677888765 


Q ss_pred             CCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          163 RDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       163 ~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                        .+.|+++|.|+++..+||.+|..++.
T Consensus        74 --~kSf~v~A~s~~eK~eWl~~i~~ai~   99 (104)
T cd01218          74 --TKSFAVYAATETEKREWMLHINKCVT   99 (104)
T ss_pred             --CeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence              68999999999999999999999884

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]

Probab=97.50  E-value=6.1e-05  Score=89.82  Aligned_cols=96  Identities=20%  Similarity=0.375  Sum_probs=67.8

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCC--eeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEec
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHT--SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~--sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~  161 (804)
                      -+.+||||+  +|...|-|+.|||||...  +|.||.+..+..|.+ ...-.....+....    ....+.|-+|++...
T Consensus      1634 r~~eG~LyK--rGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG-~IdLaevesv~~~~----~k~vdekgffdlktt 1706 (1732)
T KOG1090|consen 1634 RIPEGYLYK--RGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKG-CIDLAEVESVALIG----PKTVDEKGFFDLKTT 1706 (1732)
T ss_pred             cCcccchhh--cchhhcccccceeEecCCccceeeecccccccccc-hhhhhhhhhhcccC----ccccCccceeeeehh
Confidence            356998875  556679999999999866  799999877665433 22112222222111    123467777888765


Q ss_pred             CCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       162 ~~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                         .|+|-|+|.+-....+|++.|+..+
T Consensus      1707 ---~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1707 ---NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred             ---hHHHHHHhccchHHHHHHHHHHHhh
Confidence               6899999999999999999999875

>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=4.6e-05  Score=86.67  Aligned_cols=98  Identities=26%  Similarity=0.293  Sum_probs=67.7

Q ss_pred             eEEEeeeEee-------cCCC-CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcce------eee
Q 003668           84 VFKSGPLFIS-------SKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV------VVK  149 (804)
Q Consensus        84 v~KEGyL~~~-------kKg~-~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV------~~~  149 (804)
                      +.|.|+|-++       +|.+ +.+.||..|.||++--|+|-||+--.   . .    .|..-++.+..+|      .-.
T Consensus       506 ~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p---~-k----alse~~lknavsvHHALAt~At  577 (774)
T KOG0932|consen  506 TYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKP---G-K----ALSESDLKNAVSVHHALATPAT  577 (774)
T ss_pred             hhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCc---c-c----chhhhhhhhhhhhhhhhcCCCc
Confidence            7899977652       1222 56889999999999999998865311   0 0    0111111111111      124


Q ss_pred             cCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          150 ADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       150 ~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      .++|..|+|.+++.+.|+|+|||.+.++|+.||..|.-+.
T Consensus       578 dY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vA  617 (774)
T KOG0932|consen  578 DYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVA  617 (774)
T ss_pred             ccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHH
Confidence            5777778888888899999999999999999999999654

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=97.45  E-value=0.0011  Score=61.54  Aligned_cols=87  Identities=26%  Similarity=0.324  Sum_probs=53.0

Q ss_pred             ceEEEeeeEeecCCCCCCCCceEEEEEeCC-eeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEec
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHT-SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~-sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~  161 (804)
                      .++++|++.+++ |.   .+++||++|++. .|+|+......         + -+.|.+.....+..... + .|.|..+
T Consensus        12 ~Il~~g~v~K~k-gl---~~kkR~liLTd~PrL~Yvdp~~~~---------~-KGeI~~~~~l~v~~k~~-~-~F~I~tp   75 (104)
T PF14593_consen   12 LILKQGYVKKRK-GL---FAKKRQLILTDGPRLFYVDPKKMV---------L-KGEIPWSKELSVEVKSF-K-TFFIHTP   75 (104)
T ss_dssp             -EEEEEEEEEEE-TT---EEEEEEEEEETTTEEEEEETTTTE---------E-EEEE--STT-EEEECSS-S-EEEEEET
T ss_pred             eEEEEEEEEEee-ce---EEEEEEEEEccCCEEEEEECCCCe---------E-CcEEecCCceEEEEccC-C-EEEEECC
Confidence            499999877663 33   399999999999 55555433211         1 13344443333322222 2 4556554


Q ss_pred             CCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       162 ~~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                         +|+|+|.. .+.+...|+++|+.+.
T Consensus        76 ---~RtY~l~d-~~~~A~~W~~~I~~~~   99 (104)
T PF14593_consen   76 ---KRTYYLED-PEGNAQQWVEAIEEVK   99 (104)
T ss_dssp             ---TEEEEEE--TTS-HHHHHHHHHHHH
T ss_pred             ---CcEEEEEC-CCCCHHHHHHHHHHHH
Confidence               89999998 5666888999999876

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=97.42  E-value=0.00027  Score=82.67  Aligned_cols=98  Identities=22%  Similarity=0.325  Sum_probs=67.2

Q ss_pred             eEEEeeeEeecCC--C-CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceee-ecCCCeEEEEE
Q 003668           84 VFKSGPLFISSKG--I-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV-KADKKLLTVLF  159 (804)
Q Consensus        84 v~KEGyL~~~kKg--~-~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~-~~~Kk~~FvI~  159 (804)
                      |.|+|.+.++.++  . +.+++|||||.|+...|.|.|++...     +...+.|..|  +....+.. .-+.+++|.|+
T Consensus       565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q-----~~~~Ipl~nI--~avEklee~sF~~knv~qVV  637 (800)
T KOG2059|consen  565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ-----PIYTIPLSNI--RAVEKLEEKSFKMKNVFQVV  637 (800)
T ss_pred             eecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC-----cccceeHHHH--HHHHHhhhhccCCCceEEEE
Confidence            5666655554332  2 34789999999999999999987633     2233334332  22222211 23577788877


Q ss_pred             ecCCCCcEEEEEecchhhHHHHHHHHHHHhcc
Q 003668          160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQ  191 (804)
Q Consensus       160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~  191 (804)
                      ..+   |+.+|||.+--|.++|+.||.++...
T Consensus       638 ~~d---rtly~Q~~n~vEandWldaL~kvs~~  666 (800)
T KOG2059|consen  638 HTD---RTLYVQAKNCVEANDWLDALRKVSCC  666 (800)
T ss_pred             ecC---cceeEecCCchHHHHHHHHHHHHhcc
Confidence            663   79999999999999999999998753

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=97.38  E-value=0.0011  Score=62.41  Aligned_cols=101  Identities=17%  Similarity=0.230  Sum_probs=65.8

Q ss_pred             ceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCC-CC--CCccee----eecCCeeecCCcceeeecCCCeE
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI-PQ--KGSEVN----LTLGGIDLNNSGSVVVKADKKLL  155 (804)
Q Consensus        83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~-p~--~g~e~~----~~L~~~~l~~s~sV~~~~~Kk~~  155 (804)
                      ..++||-|-+...+  .+.++.|||.|=++.|+|.|...... ..  .+..+.    +.+..+.|...   .+...-++.
T Consensus         3 elI~EG~L~ki~~~--~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~---~d~~~~kna   77 (112)
T cd01261           3 EFIMEGTLTRVGPS--KKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDK---PDSSEYKNA   77 (112)
T ss_pred             cccccCcEEEEecc--cCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEc---CCCcccCce
Confidence            46889977654432  36789999999999999988543210 00  011111    33444444422   112223667


Q ss_pred             EEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       156 FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                      |.|...  +++.|.|+|.|+++..+||++|..++.
T Consensus        78 F~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~  110 (112)
T cd01261          78 FEIILK--DGNSVIFSAKNAEEKNNWMAALISVQT  110 (112)
T ss_pred             EEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence            877753  367899999999999999999998875

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=97.33  E-value=0.00093  Score=79.43  Aligned_cols=103  Identities=17%  Similarity=0.314  Sum_probs=70.5

Q ss_pred             ceEEEeeeEeecCC-CCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeee----cCCCeEEE
Q 003668           83 AVFKSGPLFISSKG-IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVK----ADKKLLTV  157 (804)
Q Consensus        83 ~v~KEGyL~~~kKg-~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~----~~Kk~~Fv  157 (804)
                      .+.+|||||.-+.. .+...-++|||||.+..+.|||.++...       .+.+++..|.....|.+.    ...+-.|+
T Consensus         3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~yv   75 (719)
T PLN00188          3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYV   75 (719)
T ss_pred             cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEEE
Confidence            37899999986654 4555679999999999999999865331       133444444433333111    22344455


Q ss_pred             EEe--cCCCCcEEEEEecchhhHHHHHHHHHHHhccC
Q 003668          158 LFP--DGRDGRAFTLKAESLEDLYDWKTALENALAQA  192 (804)
Q Consensus       158 I~~--~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~a  192 (804)
                      +..  +....+..+|.|-+.+|...|+.|++.++.+.
T Consensus        76 l~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~  112 (719)
T PLN00188         76 LSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH  112 (719)
T ss_pred             EEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence            554  23345678999999999999999999999753

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=97.30  E-value=0.00051  Score=79.59  Aligned_cols=99  Identities=23%  Similarity=0.329  Sum_probs=60.8

Q ss_pred             CceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEe-cCCCCCCCCCCccee-eecCCeeecCCccee--eecCCCeEEE
Q 003668           82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFF-RSDPSAIPQKGSEVN-LTLGGIDLNNSGSVV--VKADKKLLTV  157 (804)
Q Consensus        82 ~~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yY-Kd~~~~~p~~g~e~~-~~L~~~~l~~s~sV~--~~~~Kk~~Fv  157 (804)
                      +.+.+.|||++.....   .|++|||.+..+.+... ...++.......... ..+..|     ..|.  ....+.++|.
T Consensus       375 sDv~~~G~l~k~~~~~---~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v-----~pv~~~~~~~~~~~~~  446 (478)
T PTZ00267        375 SDVTHGGYLYKYSSDM---RWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDV-----FPVPEVYSQKHPNQLV  446 (478)
T ss_pred             CCcccceEEeccCCCc---chhhheEEecCCceEEEeccccccCCCCCccccHHHhccc-----ccccHHhcCCCCceEE
Confidence            3478999888765433   59999999998866554 322211000000011 111111     1110  1223567777


Q ss_pred             EEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          158 LFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       158 I~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                      +.  .+.|+.++|+|+|+++|++||.+|+.+++
T Consensus       447 i~--~~~~~~~~~~~~~~~~~~~W~~~~~~~~~  477 (478)
T PTZ00267        447 LW--FNNGQKIIAYAKTAEDRDQWISKFQRACG  477 (478)
T ss_pred             EE--ecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence            74  45688899999999999999999999873

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=97.29  E-value=0.00065  Score=63.68  Aligned_cols=80  Identities=14%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             EEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCee-ecC-CcceeeecCCCeEEEEEecC
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID-LNN-SGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~-l~~-s~sV~~~~~Kk~~FvI~~~~  162 (804)
                      +|||||---....  +.|||+|++|....+.+|+++.+..+-+.    +.|..|. +.. .+.........+||+|.+. 
T Consensus         1 lkEGWmVHyT~~d--~~rKRhYWrLDsK~Itlf~~e~~skyyKe----IPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~-   73 (117)
T cd01239           1 LKEGWMVHYTSSD--NRRKKHYWRLDSKAITLYQEESGSRYYKE----IPLAEILSVSSNNGDSVLAKHPPHCFEIRTT-   73 (117)
T ss_pred             CccceEEEEecCc--cceeeeEEEecCCeEEEEEcCCCCeeeEE----eehHHheEEeccCCCcCCCCCCCcEEEEEec-
Confidence            3799876444333  68999999999999999999876543221    2222221 110 0111122457799999875 


Q ss_pred             CCCcEEEEEec
Q 003668          163 RDGRAFTLKAE  173 (804)
Q Consensus       163 ~dgrty~LQAd  173 (804)
                        ..+|+.+.+
T Consensus        74 --~~vY~VG~~   82 (117)
T cd01239          74 --TNVYFVGGE   82 (117)
T ss_pred             --CEEEEeccc
Confidence              688888775

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=97.22  E-value=0.0011  Score=62.00  Aligned_cols=100  Identities=18%  Similarity=0.273  Sum_probs=63.3

Q ss_pred             EeeeEeecCC--CCCCCCceEEEEEeCCeeEEecCCCCCC-CCCCcceeeecC--CeeecCCccee-eecCCCeEEEEEe
Q 003668           87 SGPLFISSKG--IGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLG--GIDLNNSGSVV-VKADKKLLTVLFP  160 (804)
Q Consensus        87 EGyL~~~kKg--~~~ksWkKRWfVL~~~sL~yYKd~~~~~-p~~g~e~~~~L~--~~~l~~s~sV~-~~~~Kk~~FvI~~  160 (804)
                      -|||.-+-.+  ...+.|+.+|++|++..|++|+..+-.. ....+.....|-  .+.+...+... ....+.+||.+.+
T Consensus         2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt   81 (108)
T cd01258           2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT   81 (108)
T ss_pred             ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence            3766655443  2458999999999999999999876421 111122222232  11221111110 0225668998876


Q ss_pred             cCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668          161 DGRDGRAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       161 ~~~dgrty~LQAdSeeE~~eWI~AI~~  187 (804)
                      ... -..++|..++..|+..|..||..
T Consensus        82 g~~-vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          82 GTQ-VENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             CCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence            533 37899999999999999999964

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]

Probab=96.71  E-value=0.00039  Score=79.79  Aligned_cols=100  Identities=21%  Similarity=0.402  Sum_probs=67.4

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeE-----EecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEE
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLV-----FFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVL  158 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~-----yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI  158 (804)
                      .-..||||.-++.. |+.||||||||..-+-+     -|+.++..     +..-+.|.+.++.-...-.--...+.+|.-
T Consensus       464 mkhsgylyaig~nv-wkrwkkrffvlvqvsqytfamcsyrekkae-----pqel~qldgytvdytdp~pglqgg~~ffna  537 (1218)
T KOG3543|consen  464 MKHSGYLYAIGRNV-WKRWKKRFFVLVQVSQYTFAMCSYREKKAE-----PQELIQLDGYTVDYTDPSPGLQGGKHFFNA  537 (1218)
T ss_pred             cccceeehhhhhHH-HHHhHhhEEEEEEhhhhhhHhhhhhhcccC-----hHHHhhccCeeeccCCCCCccccchHHHHH
Confidence            56789999887765 89999999999876432     24443321     223355677766655433212233433432


Q ss_pred             EecCCCCcEEEEEecchhhHHHHHHHHHHHhccC
Q 003668          159 FPDGRDGRAFTLKAESLEDLYDWKTALENALAQA  192 (804)
Q Consensus       159 ~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~a  192 (804)
                      +   +.|.+..|..+++.|+..|++||-.+.+++
T Consensus       538 v---kegdtvifasddeqdr~lwvqamyratgqs  568 (1218)
T KOG3543|consen  538 V---KEGDTVIFASDDEQDRHLWVQAMYRATGQS  568 (1218)
T ss_pred             h---ccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence            2   237889999999999999999999988754

>PF15408 PH_7: Pleckstrin homology domain

Probab=96.59  E-value=0.00075  Score=59.75  Aligned_cols=93  Identities=12%  Similarity=0.122  Sum_probs=60.8

Q ss_pred             EeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCC----eeecCCcceeeecCCCeEEEEEecC
Q 003668           87 SGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG----IDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        87 EGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~----~~l~~s~sV~~~~~Kk~~FvI~~~~  162 (804)
                      |||||+.+++.    -+|||.||++..+.||.++.+..     -.++.|+.    +.+...... ...-.-..|-|....
T Consensus         1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG~~-----L~sF~L~~s~~s~Pm~~~~~A-~~N~Gi~A~G~L~~~   70 (104)
T PF15408_consen    1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGGQY-----LCSFQLSSSVVSHPMVNFSQA-VPNLGINAFGFLMYS   70 (104)
T ss_pred             CCeEEEeccch----HHHHHHhhhhceeEEecccCCce-----eeeeehhhhhhhccccccccc-CCCCCeeEEEEEEec
Confidence            69999999875    58999999999999999765321     01222322    111111000 011122345555556


Q ss_pred             CCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          163 RDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       163 ~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      .+++..-+-|++.+.|+.|+++|.+..
T Consensus        71 ~~~~~~~~FA~S~~~~~~Wi~~mN~~s   97 (104)
T PF15408_consen   71 PSRRHVQCFASSKKVCQSWIQVMNSPS   97 (104)
T ss_pred             CCcchhhhhhhHHHHHHHHHHHhcChh
Confidence            778888899999999999999997644

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=96.29  E-value=0.04  Score=50.73  Aligned_cols=92  Identities=18%  Similarity=0.213  Sum_probs=60.1

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~  163 (804)
                      .++||.|...+.      =+-|++-|=+..|.|.|..++.. ..  --.+.+....+...    ...+ .++|.|.....
T Consensus         4 Llleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y-~~--K~~i~~~~l~i~e~----~~~d-~~~F~v~~~~~   69 (97)
T cd01222           4 LLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKY-QF--KAYIPCKNLMLVEH----LPGE-PLCFRVIPFDD   69 (97)
T ss_pred             eeeeceEEeecC------CCceEEEEecccEEEEEecCCee-EE--EEEEEecceEEecC----CCCC-CcEEEEEecCC
Confidence            678997764443      23588888888899988544321 00  00122333333322    1223 68898877655


Q ss_pred             CCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          164 DGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       164 dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      +.+.|.|||.|.++.+.|+++|+.++
T Consensus        70 p~~~~~l~A~s~e~K~~W~~~i~~~i   95 (97)
T cd01222          70 PKGALQLTARNREEKRIWTQQLKRAM   95 (97)
T ss_pred             CceEEEEEecCHHHHHHHHHHHHHHh
Confidence            55789999999999999999999886

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0517 consensus Beta-spectrin [Cytoskeleton]

Probab=96.06  E-value=0.0001  Score=92.63  Aligned_cols=102  Identities=19%  Similarity=0.222  Sum_probs=73.9

Q ss_pred             eEEEeeeEee------cCCCCCCCCceEEEEEeCCeeEEecCCCCCCC----CCCcceeeecCCeeecCCcceeeecCCC
Q 003668           84 VFKSGPLFIS------SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP----QKGSEVNLTLGGIDLNNSGSVVVKADKK  153 (804)
Q Consensus        84 v~KEGyL~~~------kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p----~~g~e~~~~L~~~~l~~s~sV~~~~~Kk  153 (804)
                      ..++|+||.+      ++..+.++|.+.||++..+.+.||+|.+....    ...++..+.+..+.+...     .++++
T Consensus      2299 ~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a-----~dy~k 2373 (2473)
T KOG0517|consen 2299 RQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVA-----SDYHK 2373 (2473)
T ss_pred             HHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHH-----HHHHH
Confidence            5789999863      34557899999999999999999999875432    233444455554443332     23444


Q ss_pred             eEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       154 ~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                      ..+++.+...+|..|.|+|.++++|..|++++..+..
T Consensus      2374 kk~v~~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2374 KKHVFLLQLPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred             HhHhhhhcCCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            4445555577899999999999999999999987764

>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]

Probab=95.91  E-value=0.0043  Score=77.46  Aligned_cols=160  Identities=16%  Similarity=0.249  Sum_probs=123.8

Q ss_pred             ccccchhHh-h--hcCCCCcHHHHH-HHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC---CCC---C-CCChhh
Q 003668          229 VIGRPILLA-L--EDVDGTPSFLEK-AIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT---EFS---P-EEDAHI  297 (804)
Q Consensus       229 vFGvpLe~l-l--~~~~~VP~~l~~-~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~~---~-~~d~h~  297 (804)
                      ++|+++..+ .  .-....|.++.. |.......|....|+||..+....+...+..++....   .+-   . ..++..
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~  541 (918)
T KOG1453|consen  462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL  541 (918)
T ss_pred             ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence            888888765 2  224457888888 7788888999999999999998899999888876421   111   1 224556


Q ss_pred             hHHHHHHHHhhC--CCCCCChhhHHHHH----------------HHHhcCc-hHHH-------HHHHHHHHh----cCCh
Q 003668          298 IADCVKYVIREL--PSSPVPASCCNALL----------------EARRTDR-GSRV-------SAMRTAILE----TFPE  347 (804)
Q Consensus       298 vAslLK~fLReL--PePLlp~~l~~~~l----------------~a~~~~~-~~ri-------~~i~~lI~~----~LP~  347 (804)
                      +.++++.|+|.+  |.+......|..|+                ....... .+++       ..+..+. .    .+|.
T Consensus       542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~-~~e~~~vP~  620 (918)
T KOG1453|consen  542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELA-RYEPSTVPF  620 (918)
T ss_pred             ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhh-ccCCCCCCH
Confidence            677999999999  99988888888888                3333444 5555       5666543 4    7999


Q ss_pred             hHHHHHHHHHHHHHHHHhhcccC-CCCc-chhhhhhcc----cccCCC
Q 003668          348 PNRKLLQRILMMMQTVASSKNQN-RMST-SAVAACMAP----LLLRPL  389 (804)
Q Consensus       348 ~Nr~lL~~Ll~~L~~V~~~s~~N-kMt~-~NLAv~FgP----tLlrp~  389 (804)
                      ....+|.++..|+.+|.....+| .|+. .||+.+|++    +++..+
T Consensus       621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~  668 (918)
T KOG1453|consen  621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP  668 (918)
T ss_pred             HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence            99999999999999999999888 8887 999999999    566554

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=95.87  E-value=0.011  Score=54.85  Aligned_cols=95  Identities=19%  Similarity=0.305  Sum_probs=62.9

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCee-ecCCcceeeecCCCeEEEEEecC
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID-LNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~-l~~s~sV~~~~~Kk~~FvI~~~~  162 (804)
                      ++..||+.+.+ |++...|.+|||-|-++.|-+|-.....    +++. +....+. +.. +.  .......|-.+..+ 
T Consensus         3 cIvhGyi~KLG-GPFls~WQ~Ry~~LfPNRLE~~~~~~~~----~~eL-i~M~~i~~V~~-e~--~~iK~~~CI~ik~k-   72 (116)
T cd01240           3 CIVHGYIKKLG-GPFLSQWQTRYFKLYPNRLELYGESEAN----KPEL-ITMDQIEDVSV-EF--QQIKEENCILLKIR-   72 (116)
T ss_pred             eEEeeehhhhC-CHHHHHHHHHHheeCcceeeeccccccc----CCcE-EEeehhhhcch-hh--eeeccCceEEEEEc-
Confidence            78899776554 4567899999999999999997543322    1222 1112111 110 00  12234456666654 


Q ss_pred             CCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          163 RDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       163 ~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                       +++.|++++.++-+..+|..-|+.+-
T Consensus        73 -~~~k~vlt~~d~i~l~qW~~elr~a~   98 (116)
T cd01240          73 -DEKKIVLTNSDEIELKQWKKELRDAH   98 (116)
T ss_pred             -CCceEEEecCCcHHHHHHHHHHHHHH
Confidence             57889999999999999999999875

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>PLN02866 phospholipase D

Probab=95.83  E-value=0.039  Score=68.50  Aligned_cols=104  Identities=18%  Similarity=0.298  Sum_probs=64.2

Q ss_pred             ceEEEeeeEeec-----C-CC------------CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeec-CCeeecCC
Q 003668           83 AVFKSGPLFISS-----K-GI------------GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTL-GGIDLNNS  143 (804)
Q Consensus        83 ~v~KEGyL~~~k-----K-g~------------~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L-~~~~l~~s  143 (804)
                      .-.||||+.++.     + +.            ...+|.|||||++.+.|.|.++..+..+.  ..+.++. ........
T Consensus       181 ~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~--~v~lfD~~~~~~~~~~  258 (1068)
T PLN02866        181 PKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKPL--DIIVFDVLPASNGNGE  258 (1068)
T ss_pred             CCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCcee--EEEEEecccccccCCC
Confidence            356999888762     1 10            12569999999999999999776654321  0111111 00001111


Q ss_pred             ccee------eecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhcc
Q 003668          144 GSVV------VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ  191 (804)
Q Consensus       144 ~sV~------~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~  191 (804)
                      ..+.      ....-++.|.|...   +|.+.|.+.|...+..|+.+|+.+...
T Consensus       259 ~~~~~~~~~k~~~~~~~~~~i~~~---~r~l~l~~~s~~~~~~w~~ai~~~~~~  309 (1068)
T PLN02866        259 GQISLAKEIKERNPLRFGFKVTCG---NRSIRLRTKSSAKVKDWVAAINDAGLR  309 (1068)
T ss_pred             cceeecccccccCCCcceEEEecC---ceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence            1110      11123556666654   688999999999999999999998743

>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]

Probab=95.55  E-value=0.0091  Score=68.71  Aligned_cols=94  Identities=24%  Similarity=0.336  Sum_probs=61.0

Q ss_pred             eEEEeeeEeecCCC---CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCccee-ee--c---CCCe
Q 003668           84 VFKSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-VK--A---DKKL  154 (804)
Q Consensus        84 v~KEGyL~~~kKg~---~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~-~~--~---~Kk~  154 (804)
                      ..-||  .+.+|++   +.+.|+-|||+|.+..|.|-|.......        .-..|+++...+|. +.  .   .-+.
T Consensus       735 p~iEG--QLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpK  804 (851)
T KOG3723|consen  735 PLIEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPK  804 (851)
T ss_pred             chhcc--hhhhhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccch
Confidence            46677  4444444   5688999999999999999775432211        01123333333331 11  1   1123


Q ss_pred             EEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       155 ~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                      .|+|+..   ..+|.|.|.++...++|++.++=+++
T Consensus       805 AFEIFTA---D~T~ILKaKDeKNAEEWlqCL~IavA  837 (851)
T KOG3723|consen  805 AFEIFTA---DKTYILKAKDEKNAEEWLQCLNIAVA  837 (851)
T ss_pred             hhheeec---CceEEeecccccCHHHHHHHHHHHHH
Confidence            5777765   56799999999999999999997774

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=95.51  E-value=0.033  Score=65.13  Aligned_cols=37  Identities=16%  Similarity=0.250  Sum_probs=30.7

Q ss_pred             CCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       152 Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                      .++.|.  ...+.|+.|.|||.++++|..||.+|+.+++
T Consensus       454 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (496)
T PTZ00283        454 AAHVFA--VAFKTGRRLLFQARSDPERDAWMQKIQSVLG  490 (496)
T ss_pred             CCcEEE--EEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence            344444  4456799999999999999999999999884

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=95.26  E-value=0.19  Score=48.04  Aligned_cols=99  Identities=18%  Similarity=0.229  Sum_probs=53.5

Q ss_pred             eeeEeecCCC---CCCCCceEEEEEeCC--eeEEecCCCCCC-CCCCcceeeecCCeeecCCcceeee----cCCCeEEE
Q 003668           88 GPLFISSKGI---GWTSWKKRWFILTHT--SLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSVVVK----ADKKLLTV  157 (804)
Q Consensus        88 GyL~~~kKg~---~~ksWkKRWfVL~~~--sL~yYKd~~~~~-p~~g~e~~~~L~~~~l~~s~sV~~~----~~Kk~~Fv  157 (804)
                      .|||+-.++.   +..+.++|||-|...  +|++....+... ...+..-.+.+..+.....+.....    .+..++|.
T Consensus        13 ~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~   92 (123)
T PF12814_consen   13 EWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSII   92 (123)
T ss_pred             cEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEE
Confidence            3777744433   346899999999986  455544332111 1000001122222211111110000    11234444


Q ss_pred             EEecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          158 LFPDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       158 I~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      |..   ++|++-|.|++.++.+-|+.+|+-.+
T Consensus        93 i~t---~~R~L~l~a~s~~~~~~W~~aL~~L~  121 (123)
T PF12814_consen   93 IVT---PDRSLDLTAPSRERHEIWFNALRYLL  121 (123)
T ss_pred             EEc---CCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence            443   37999999999999999999998766

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]

Probab=95.21  E-value=0.009  Score=71.36  Aligned_cols=95  Identities=23%  Similarity=0.375  Sum_probs=65.5

Q ss_pred             EEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCC
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD  164 (804)
Q Consensus        85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~d  164 (804)
                      ...|||+..=|..  ..|.|.|+|.+.-+|+|||+-.+..+.    ..+.|-++.+..-.. .+..-|.+.|.+..+   
T Consensus       925 qLsg~Llrkfkns--sgwqkLwvvft~fcl~fyKS~qD~~~l----aslPlLgysvs~P~~-~d~i~K~~vfkl~fk---  994 (1036)
T KOG3531|consen  925 QLSGYLLRKFKNS--SGWQKLWVVFTNFCLFFYKSHQDSEPL----ASLPLLGYSVSIPAE-PDPIQKDYVFKLKFK---  994 (1036)
T ss_pred             hhhHHHHHHhhcc--ccceeeeeeecceeeEeeccccccccc----ccccccccccCCCCC-CCCcchhheeeeehh---
Confidence            4557666433332  479999999999999999987765332    123333443332111 233457777777765   


Q ss_pred             CcEEEEEecchhhHHHHHHHHHHHh
Q 003668          165 GRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       165 grty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      ..+|+|.|++.-....|+..|+.+.
T Consensus       995 ~hvyffraes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen  995 SHVYFFRAESYYTFERWMEVITDAP 1019 (1036)
T ss_pred             hhHHHHhhhhhhhhhhHHHHhhcCC
Confidence            5689999999999999999999876

>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]

Probab=95.06  E-value=0.013  Score=68.82  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=59.6

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~  163 (804)
                      ..+.||+-....  ..+.|+|||||++.+.+.||+...+..-.......+.-+.+.+..        .--..|.++..  
T Consensus       249 ~ekSgy~~~~~s--~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~--------~~s~~fqli~~--  316 (936)
T KOG0248|consen  249 MEKSGYWTQLTS--RIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ--------GAAYAFQLITS--  316 (936)
T ss_pred             hhcccchhcchH--HHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc--------chhHHhhhhhh--
Confidence            568886655443  347999999999999999999877543211111212111111111        22223333322  


Q ss_pred             CCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          164 DGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       164 dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                       ...|+|-++++.-..+|++.|+.+|.
T Consensus       317 -t~~~~~~~~s~~lt~dw~~iL~~~iK  342 (936)
T KOG0248|consen  317 -TDKMNFMTESERTTHDWVTILSAAIK  342 (936)
T ss_pred             -ceeEEEeccChhhhhhhHHHHHHHHH
Confidence             46799999999999999999998773

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=94.88  E-value=0.33  Score=45.65  Aligned_cols=100  Identities=14%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             eEEEeeeEeecCCCCCCCC-ceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeee---cCCCeEEEEE
Q 003668           84 VFKSGPLFISSKGIGWTSW-KKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVK---ADKKLLTVLF  159 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksW-kKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~---~~Kk~~FvI~  159 (804)
                      .+++|-|.+.+..   +.| +.|++-|=++.|+|.|...-......--..+.+..+.|.....-...   ..-++.|.|.
T Consensus         2 li~~Gel~~~s~~---~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~   78 (109)
T cd01224           2 LFLQGEATRQKQN---KGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY   78 (109)
T ss_pred             ceEeeeEEEEecc---cCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence            4677866665531   123 57899999999999995431111000001134455554442100000   0125567777


Q ss_pred             ecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668          160 PDGRDGRAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~  187 (804)
                      ...+ +..|.|+|.|+++...||+|+..
T Consensus        79 ~~~~-~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          79 SEST-DEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             EcCC-CeEEEEEECCHHHHHHHHHHHHH
Confidence            6532 46799999999999999999964

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=94.49  E-value=0.42  Score=46.08  Aligned_cols=97  Identities=15%  Similarity=0.102  Sum_probs=56.8

Q ss_pred             eEEEeeeEeecCCC------CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceee----ecCCeeecCCccee------
Q 003668           84 VFKSGPLFISSKGI------GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNL----TLGGIDLNNSGSVV------  147 (804)
Q Consensus        84 v~KEGyL~~~kKg~------~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~----~L~~~~l~~s~sV~------  147 (804)
                      ..|.|.|.....+.      ...+-+.+|+.|=.+.|.|.|.+.+.      .+.+    ....+.+.......      
T Consensus         3 LvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~------~f~V~dy~~r~~l~V~~~e~~~~~~~~~   76 (125)
T cd01221           3 LVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS------TFVVFDYAPRSFLRVEKIEPDNQKIPLG   76 (125)
T ss_pred             eEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC------eEEEEeeccccceEEeeccccccccccc
Confidence            46888777643321      12245678999999999998754322      1222    12222222211000      


Q ss_pred             -eecCCCeEEEEEecC-CCC--cEEEEEecchhhHHHHHHHHH
Q 003668          148 -VKADKKLLTVLFPDG-RDG--RAFTLKAESLEDLYDWKTALE  186 (804)
Q Consensus       148 -~~~~Kk~~FvI~~~~-~dg--rty~LQAdSeeE~~eWI~AI~  186 (804)
                       .....++.|.++.-. ..|  +.+.|+|+|+.|+..||+||.
T Consensus        77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~  119 (125)
T cd01221          77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA  119 (125)
T ss_pred             ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence             011346677776432 234  469999999999999999984

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=94.35  E-value=0.69  Score=43.88  Aligned_cols=102  Identities=14%  Similarity=0.161  Sum_probs=59.2

Q ss_pred             eEEEeeeEeecCCC-CCCCCceEEEEEeCCeeEEecCCCCCCCCCCccee----eecCCeeecCCcceeeecCCCeEEEE
Q 003668           84 VFKSGPLFISSKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVN----LTLGGIDLNNSGSVVVKADKKLLTVL  158 (804)
Q Consensus        84 v~KEGyL~~~kKg~-~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~----~~L~~~~l~~s~sV~~~~~Kk~~FvI  158 (804)
                      .+++|.+.+..... ..+.=+.|-+-|=...|+|-|.......-..+.+.    +.+..+.+...     ..+-.++|.|
T Consensus         5 Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~-----v~gd~~kF~i   79 (114)
T cd01232           5 LLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEH-----VEGDPCRFAL   79 (114)
T ss_pred             eEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEc-----cCCCCceEEE
Confidence            56666555433322 12333566677777778887754322100111111    22333333221     2234566888


Q ss_pred             EecCCC--CcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          159 FPDGRD--GRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       159 ~~~~~d--grty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                      ....++  ...|++||.|.+..+.|+..|+.++.
T Consensus        80 ~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~  113 (114)
T cd01232          80 WSGDPPISDNRIILKANSQETKQEWVKKIREILQ  113 (114)
T ss_pred             EeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence            776553  47899999999999999999998763

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=93.78  E-value=0.3  Score=46.36  Aligned_cols=86  Identities=17%  Similarity=0.227  Sum_probs=51.8

Q ss_pred             CceEEEEEeCCeeEEecCCCCCCCCCCccee----eecCCeeecCCcceeeec--CCCeEEEEEecCCCC-cEEEEEecc
Q 003668          102 WKKRWFILTHTSLVFFRSDPSAIPQKGSEVN----LTLGGIDLNNSGSVVVKA--DKKLLTVLFPDGRDG-RAFTLKAES  174 (804)
Q Consensus       102 WkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~----~~L~~~~l~~s~sV~~~~--~Kk~~FvI~~~~~dg-rty~LQAdS  174 (804)
                      =+.||.-|=+.-+++.|...+..  +.+++.    +.+..+.|....+- +..  ++++.+.+.+...+| ..|+|+|.|
T Consensus        20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~-d~~~~~~~~~~~f~L~~~~~~~~~~f~~Kt   96 (116)
T cd01223          20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSR-DTEGRDTRWKYGFYLAHKQGKTGFTFYFKT   96 (116)
T ss_pred             CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCcc-CcccCCcceEEEEEEEecCCCccEEEEeCC
Confidence            35889888888899988654321  122222    22333333322111 111  334443333333444 679999999


Q ss_pred             hhhHHHHHHHHHHHhc
Q 003668          175 LEDLYDWKTALENALA  190 (804)
Q Consensus       175 eeE~~eWI~AI~~ai~  190 (804)
                      +++.+.||.|+..|+.
T Consensus        97 ee~K~kWm~al~~a~s  112 (116)
T cd01223          97 EHLRKKWLKALEMAMS  112 (116)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998884

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]

Probab=93.76  E-value=0.081  Score=60.27  Aligned_cols=94  Identities=19%  Similarity=0.325  Sum_probs=65.1

Q ss_pred             ceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecC
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~  162 (804)
                      .+...|+|-+-....  ..|..||++|..+.|.||++..+.  ..|+--.+.|....+...     ..+ -..|.|... 
T Consensus        23 w~e~~G~lskwtnyi--~gwqdRyv~lk~g~Lsyykse~E~--~hGcRgsi~l~ka~i~ah-----EfD-e~rfdIsvn-   91 (611)
T KOG1739|consen   23 WVERCGVLSKWTNYI--HGWQDRYVVLKNGALSYYKSEDET--EHGCRGSICLSKAVITAH-----EFD-ECRFDISVN-   91 (611)
T ss_pred             chhhcceeeeeeccc--ccccceEEEEcccchhhhhhhhhh--hcccceeeEeccCCcccc-----cch-hheeeeEec-
Confidence            356778766655444  579999999999999999987654  234444455555555543     222 233555543 


Q ss_pred             CCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          163 RDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       163 ~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                        ..+.++.|.+...++.|+.+|.-.-
T Consensus        92 --~nv~~lra~~~~hr~~w~d~L~wmk  116 (611)
T KOG1739|consen   92 --DNVWYLRAQDPDHRQQWIDALEWMK  116 (611)
T ss_pred             --cceeeehhcCcHHHHHHHHHHHHHh
Confidence              4678999999999999999998543

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=93.69  E-value=0.49  Score=42.92  Aligned_cols=86  Identities=21%  Similarity=0.296  Sum_probs=50.2

Q ss_pred             EEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecC-CcceeeecCCCeEEEEEecCC
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNN-SGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~-s~sV~~~~~Kk~~FvI~~~~~  163 (804)
                      .+.|.++++++ .   .|++|=++|++....||=|...... +        +.|.+.. .-.+.....  ..|.|..+  
T Consensus         2 l~~g~v~Kr~g-l---f~kkR~LiLTd~PrL~yvdp~~~~~-K--------geIp~s~~~l~v~~~~~--~~F~I~Tp--   64 (89)
T cd01262           2 LKIGAVKKRKG-L---FAKKRQLILTNGPRLIYVDPVKKVV-K--------GEIPWSDVELRVEVKNS--SHFFVHTP--   64 (89)
T ss_pred             ceeeeeeehhc-c---ccceeeEEEecCceEEEEcCCcCeE-E--------eEecccccceEEEEecC--ccEEEECC--
Confidence            57785544332 2   6899999999996666655542211 1        1122222 111111222  33455444  


Q ss_pred             CCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          164 DGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       164 dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                       +|+|+|. +-+.....|+.+|..+.
T Consensus        65 -~rty~le-D~~~~a~~W~~~I~~~~   88 (89)
T cd01262          65 -NKVYSFE-DPKGRASQWKKAIEDLQ   88 (89)
T ss_pred             -CceEEEE-CCCCCHHHHHHHHHHHh
Confidence             8999995 55689999999998753

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=93.30  E-value=0.35  Score=54.97  Aligned_cols=112  Identities=20%  Similarity=0.313  Sum_probs=86.9

Q ss_pred             hhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCC
Q 003668          651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTI  730 (804)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~  730 (804)
                      ..||+.|..+..+|. ||+.=+..|..+|.+|+....+-.+|-.-|+++++||+.|+++...|-..+.--.+.+      
T Consensus       347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl------  419 (493)
T KOG0804|consen  347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL------  419 (493)
T ss_pred             HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------
Confidence            467888887777764 6777788899999999999988899999999999999999999999988776544433      


Q ss_pred             ChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 003668          731 DEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKN  769 (804)
Q Consensus       731 ~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~~  769 (804)
                      -.....+=+.+...+..|..|+.++-+|-+.|..|-..+
T Consensus       420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqklk  458 (493)
T KOG0804|consen  420 KELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKLK  458 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhhh
Confidence            222223334566778888889999999988887665553

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=93.27  E-value=0.027  Score=65.11  Aligned_cols=35  Identities=14%  Similarity=0.371  Sum_probs=29.9

Q ss_pred             eEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       154 ~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                      +||.|+..  .|.++.|.|.+-+|++.|++||++.|-
T Consensus       446 e~F~IVs~--tgqtWhFeAtt~EERdaWvQai~sqIl  480 (749)
T KOG0705|consen  446 ECFEIVSN--TGQTWHFEATTYEERDAWVQAIQSQIL  480 (749)
T ss_pred             ceEEEecc--ccchhhhhhcchhhHHHHHHHHHHHHH
Confidence            48887753  478899999999999999999998773

>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]

Probab=93.18  E-value=0.021  Score=66.05  Aligned_cols=73  Identities=22%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             HHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668          357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG  436 (804)
Q Consensus       357 l~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~  436 (804)
                      +.||..|+.+.....|-+.|||+||||+|+|.++....-.+.   .-|+      .|.+......-++++++.|-+.||.
T Consensus         1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~---~~Gd------aAf~avq~qsvV~EfilnhvDvlF~   71 (670)
T KOG1449|consen    1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSH---LWGD------AAFSAVQAQSVVSEFILNHVDVLFL   71 (670)
T ss_pred             CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhcc---cccc------HHHHHHHhhhhhhhhcccccceecC
Confidence            368999999999999999999999999999977422111110   0011      2333344444568999999999998


Q ss_pred             CC
Q 003668          437 EG  438 (804)
Q Consensus       437 e~  438 (804)
                      ..
T Consensus        72 ~~   73 (670)
T KOG1449|consen   72 PT   73 (670)
T ss_pred             Cc
Confidence            43

>PF15404 PH_4: Pleckstrin homology domain

Probab=92.77  E-value=0.7  Score=47.46  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=27.5

Q ss_pred             EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecC
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRS  119 (804)
Q Consensus        86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd  119 (804)
                      +.|+||.+.+++  ..|+++|+||..+.|+.|..
T Consensus         1 ~sG~LY~K~~kh--s~F~~~~vvL~~G~Li~f~~   32 (185)
T PF15404_consen    1 MSGYLYQKPRKH--STFKKYFVVLIPGFLILFQL   32 (185)
T ss_pred             CCceeeecCCCC--CCceEEEEEEeCCEEEEEEE
Confidence            469999877766  58999999999999998875

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=92.21  E-value=0.29  Score=59.22  Aligned_cols=102  Identities=16%  Similarity=0.237  Sum_probs=63.2

Q ss_pred             eEEEeeeEeecCC--------CCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeE
Q 003668           84 VFKSGPLFISSKG--------IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLL  155 (804)
Q Consensus        84 v~KEGyL~~~kKg--------~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~  155 (804)
                      +...|+||..-..        ....--.++||||-++-|.||.+.+...|-+  .+.+.-..|......  .....-.+.
T Consensus       492 ~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~--lI~~~Eivclav~~p--d~~pn~~~~  567 (1186)
T KOG1117|consen  492 TFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNG--LININEIVCLAVHPP--DTYPNTGFI  567 (1186)
T ss_pred             ccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCc--eeeccceEEEeecCC--CCCCCcCce
Confidence            4555999973221        1234568999999999999999887654422  111111111111100  001122445


Q ss_pred             EEEEecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668          156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       156 FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai  189 (804)
                      |.+..-...+|.|+|-+++.++...|..||.+.-
T Consensus       568 f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhf  601 (1186)
T KOG1117|consen  568 FIFEIYLPGERVFLFGLETADALRKWTEAIAKHF  601 (1186)
T ss_pred             eEEEEeecccceEEeecccHHHHHHHHHHHHHhc
Confidence            5554444568999999999999999999998765

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=91.76  E-value=0.63  Score=42.61  Aligned_cols=88  Identities=15%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCC--CCCC-CCCCcceeeecCCeeecCCcceeeecCCCeEEEEEe
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSD--PSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP  160 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~--~~~~-p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~  160 (804)
                      .+++|+|...-.|.    =|.|=|.|=++-|+|-+-.  .... .......-++|..+.+...           .|.+. 
T Consensus         3 Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----------~~~~~-   66 (96)
T cd01228           3 LVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----------PFRIH-   66 (96)
T ss_pred             ccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch-----------hhhcc-
Confidence            57899777655443    3666677777777775432  1111 1122222355554444322           12222 


Q ss_pred             cCCCCcEEEEEecchhhHHHHHHHHHHH
Q 003668          161 DGRDGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       161 ~~~dgrty~LQAdSeeE~~eWI~AI~~a  188 (804)
                       .++++.|+|.|.|..|+.+|+.+|...
T Consensus        67 -~~~~KSf~~~asS~~Er~eW~~hI~~~   93 (96)
T cd01228          67 -NKNGKSYTFLLSSDYERSEWRESIQKL   93 (96)
T ss_pred             -ccCCceEEEEecCHHHHHHHHHHHHHH
Confidence             456899999999999999999999864

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=91.35  E-value=0.24  Score=57.88  Aligned_cols=97  Identities=18%  Similarity=0.326  Sum_probs=63.3

Q ss_pred             CceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCccee----eecCCeeecCCcceeeecCCCeEEE
Q 003668           82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVN----LTLGGIDLNNSGSVVVKADKKLLTV  157 (804)
Q Consensus        82 ~~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~----~~L~~~~l~~s~sV~~~~~Kk~~Fv  157 (804)
                      +..+|||.|++..-+  ..+-..||++|-..-+.|.+-..-. +  +..+.    +.+.++.+...    +.......|.
T Consensus       270 reLiKEG~l~Kis~k--~~~~qeRylfLFNd~~lyc~~r~~~-~--~~k~~~r~~~s~~~~~v~~~----~~~~~~~tF~  340 (623)
T KOG4424|consen  270 RELIKEGQLQKISAK--NGTTQERYLFLFNDILLYCKPRKRL-P--GSKYEVRARCSISHMQVQED----DNEELPHTFI  340 (623)
T ss_pred             HHHhhccceeeeecc--CCCcceeEEEEehhHHHhhhhhhhc-c--cceeccceeeccCcchhccc----ccccCCceEE
Confidence            358999988876544  3578999999999888887654411 1  11111    22222221111    1223345566


Q ss_pred             EEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          158 LFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       158 I~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                      ++.+   .+...|+|-|+++-++|+++|+.+|.
T Consensus       341 ~~G~---~r~vel~a~t~~ek~eWv~~I~~~Id  370 (623)
T KOG4424|consen  341 LTGK---KRGVELQARTEQEKKEWVQAIQDAID  370 (623)
T ss_pred             Eecc---cceEEeecCchhhHHHHHHHHHHHHH
Confidence            6643   47789999999999999999999985

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=90.88  E-value=2.9  Score=44.68  Aligned_cols=70  Identities=31%  Similarity=0.428  Sum_probs=58.1

Q ss_pred             hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003668          648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLA---LENDVARLKDQLQKERDKRTAMEAGL  717 (804)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---le~~v~~l~~~l~~e~~~~~~l~~~~  717 (804)
                      .+||.|...+..|..+|...-+.=..+|+-+++=++++.....+   ||+.|.+++.-||+.++-..-++..+
T Consensus        10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999876677777888888777766665554   78999999999999999999999888

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=90.81  E-value=3.7  Score=40.12  Aligned_cols=82  Identities=12%  Similarity=0.270  Sum_probs=50.7

Q ss_pred             ceEEEEEeCCeeEEecCCCCCCCCC-Cccee----eecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchhh
Q 003668          103 KKRWFILTHTSLVFFRSDPSAIPQK-GSEVN----LTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLED  177 (804)
Q Consensus       103 kKRWfVL~~~sL~yYKd~~~~~p~~-g~e~~----~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE  177 (804)
                      +.|++-|=...++|.|-..+..... .+.+.    +.+..+.+...     ..+-.++|.|....+. ..|+|||.|.+.
T Consensus        30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~-----v~gd~~kFeiw~~~~~-~~yilqA~t~e~  103 (133)
T cd01227          30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITEN-----VKGDTKKFEIWYNARE-EVYILQAPTPEI  103 (133)
T ss_pred             ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeeccccccc-----CCCCccEEEEEeCCCC-cEEEEEcCCHHH
Confidence            5688888888888887653221100 11121    11222222221     1223556788776553 689999999999


Q ss_pred             HHHHHHHHHHHhc
Q 003668          178 LYDWKTALENALA  190 (804)
Q Consensus       178 ~~eWI~AI~~ai~  190 (804)
                      ...|+..|...+.
T Consensus       104 K~~Wv~~I~~iL~  116 (133)
T cd01227         104 KAAWVNEIRKVLT  116 (133)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999873

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=90.64  E-value=0.66  Score=45.25  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=26.5

Q ss_pred             CCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHH
Q 003668          152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       152 Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~a  188 (804)
                      ..+.|.|..-++.|..|+|.|+|+.+++.|++.|.++
T Consensus        98 ~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen   98 SLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             SEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             CccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence            4455666667777788999999999999999999864

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=90.50  E-value=1  Score=41.65  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             ecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668          149 KADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       149 ~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~  187 (804)
                      ..++.+.|++..  .++..|.|.|.++++|+.|+..|+.
T Consensus        70 mPD~~nTFvLK~--~~~~eyI~Ea~d~~q~~SWla~Ir~  106 (107)
T cd01231          70 MPDNLYTFVLKV--DDNTDIIFEVGDEQQLNSWLAELRY  106 (107)
T ss_pred             ccCcccEEEEEe--cCCceEEEEcCCHHHHHHHHHHHhc
Confidence            446777777765  4567899999999999999999974

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin

Probab=90.04  E-value=0.77  Score=47.44  Aligned_cols=73  Identities=25%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC--CCCCCChhhHHHHhhhhhhhhHHH
Q 003668          672 EILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP--IPDTIDEKTKVELGEIAQAETDII  749 (804)
Q Consensus       672 ~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~i~~~e~~~~  749 (804)
                      +.|||--|||-+.=+.-|..||+|++.|+-|=..          |.... +..+  ....|-...++-=|-|-.+|||++
T Consensus        13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~----------~~~~~-~~~~~~~~~~L~~~LrEkEErILaLEad~~   81 (205)
T PF12240_consen   13 AQLQAACEKREQLERRLRTRLERELESLRAQQRQ----------GNSSG-SSSPSNNASNLKELLREKEERILALEADMT   81 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------CCCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999998888899999999988766322          11111 1111  122233344444466999999999


Q ss_pred             HHHHHH
Q 003668          750 NLKQKA  755 (804)
Q Consensus       750 ~l~~~~  755 (804)
                      |.|||-
T Consensus        82 kWEqkY   87 (205)
T PF12240_consen   82 KWEQKY   87 (205)
T ss_pred             HHHHHH
Confidence            999985

Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].

>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain

Probab=89.29  E-value=1.2  Score=38.53  Aligned_cols=65  Identities=28%  Similarity=0.295  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668          688 RRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE  764 (804)
Q Consensus       688 ~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~  764 (804)
                      +|..+++-+..|+.+|++|...|..+|+-+......-         .+   ..++.|+.-+..-.+|+.-|+.+|-.
T Consensus         3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~---------~~---~~~~~~~~~l~es~~ki~~Lr~~L~k   67 (72)
T cd00089           3 VRSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEK---------KK---KLLAEAEQMLRESKQKLELLKMQLEK   67 (72)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------Cc---cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566899999999999999999999999875532211         11   56677888888899999999999865

Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.

>PF15406 PH_6: Pleckstrin homology domain

Probab=88.99  E-value=0.67  Score=43.43  Aligned_cols=30  Identities=20%  Similarity=0.266  Sum_probs=24.5

Q ss_pred             EEEEEecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668          155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALEN  187 (804)
Q Consensus       155 ~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~  187 (804)
                      .|.|...   |...+|+|.+..||+.|+.+|..
T Consensus        82 kF~f~~~---G~khtF~A~s~aERD~Wv~~lk~  111 (112)
T PF15406_consen   82 KFHFKIK---GHKHTFEAASAAERDNWVAQLKA  111 (112)
T ss_pred             eEEEEeC---CceeeeecCCHHHhccHHHHhhc
Confidence            3445544   88899999999999999999863

>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]

Probab=88.62  E-value=0.12  Score=60.14  Aligned_cols=140  Identities=18%  Similarity=0.146  Sum_probs=92.9

Q ss_pred             CCccccchhHhh-hcCCCCcH-HHHHHHHHHHH---c-C-CccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhH
Q 003668          227 FPVIGRPILLAL-EDVDGTPS-FLEKAIRFIEE---H-G-VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIA  299 (804)
Q Consensus       227 ~~vFGvpLe~ll-~~~~~VP~-~l~~~i~~Le~---~-G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA  299 (804)
                      ...||.-|..+. .-++.||. .+.+|+..+..   + + ....|+|+++.+....        .+...+....|+.++.
T Consensus       207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S  278 (670)
T KOG1449|consen  207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES  278 (670)
T ss_pred             CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence            344554443222 22566777 77777766655   2 2 3445777776542211        1112233345889999


Q ss_pred             HHHHHHHhhCCCCCCChhhHHHHHHHHhcCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchh
Q 003668          300 DCVKYVIRELPSSPVPASCCNALLEARRTDR--GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAV  377 (804)
Q Consensus       300 slLK~fLReLPePLlp~~l~~~~l~a~~~~~--~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NL  377 (804)
                      .+++.|.|.+|.|+..        .++...+  .+.+...+-.+ ...++.|+.+-+.|..||...+.-.       .++
T Consensus       279 ~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~~~-~~~se~~~r~a~~lse~ft~~~~~~-------~s~  342 (670)
T KOG1449|consen  279 WDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRFSL-ETMSEAHYRTAKFLSEHFTRLCKSK-------KSL  342 (670)
T ss_pred             cccChhhhhcCCCCcc--------cccccccCcccceeeecccc-ccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence            9999999999999444        2333333  55566665544 4899999999999999998777633       899


Q ss_pred             hhhhcccccCCCC
Q 003668          378 AACMAPLLLRPLL  390 (804)
Q Consensus       378 Av~FgPtLlrp~~  390 (804)
                      +|++.|+++|++.
T Consensus       343 ~I~~~~~~~r~pp  355 (670)
T KOG1449|consen  343 AIVWSPNLFRPPP  355 (670)
T ss_pred             eeecCCCCCCCCC
Confidence            9999999999874

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=88.28  E-value=2.6  Score=45.45  Aligned_cols=115  Identities=19%  Similarity=0.404  Sum_probs=60.2

Q ss_pred             hhhhhhhhcchHHHHHHHHHhhhc-c--hhHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC
Q 003668          647 EVEIQRLEDTKSDLQRKIADEVKG-N--EILEAS-LESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNG  722 (804)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~  722 (804)
                      ...|+++-..+..|+.+|.+.+.. +  ..+... +......+..|-..|.+.+.++++++++.+..-..+...|.....
T Consensus        26 ~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~  105 (302)
T PF10186_consen   26 RSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS  105 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888888888888776550 1  111111 112222334444457777777777777777766666666655444


Q ss_pred             CCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668          723 SFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE  764 (804)
Q Consensus       723 ~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~  764 (804)
                      .++   ......+...+.+..+...+..+++++..|+.++..
T Consensus       106 ~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~  144 (302)
T PF10186_consen  106 RLS---ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR  144 (302)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332   111222333333444444444455554444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=86.60  E-value=3.1  Score=39.24  Aligned_cols=81  Identities=15%  Similarity=0.134  Sum_probs=54.8

Q ss_pred             CceEEEEEeCCeeEEecCCCCCC-CCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchhhHHH
Q 003668          102 WKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYD  180 (804)
Q Consensus       102 WkKRWfVL~~~sL~yYKd~~~~~-p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~e  180 (804)
                      =..||++|=...|.+..-.+... -..  .-.++|.++.++..   .+....++.|.|.-..  --...+.+.+.+|+.+
T Consensus        28 ~~eRyLvLFp~~LlilS~s~r~sGf~y--qGkLPL~~i~v~~l---Ed~e~~~~aFeI~G~l--i~~i~v~C~~~~e~~~  100 (111)
T cd01225          28 KRERYLVLFPNVLLMLSASPRMSGFIY--QGKLPLTGIIVTRL---EDTEALKNAFEISGPL--IERIVVVCNNPQDAQE  100 (111)
T ss_pred             cceeEEEEcCceEEEEEcCCCccceEE--eeeecccccEEech---HhccCccceEEEeccC--cCcEEEEeCCHHHHHH
Confidence            46789999999998887533111 000  11256777777653   2344567888887443  2357888999999999


Q ss_pred             HHHHHHHHh
Q 003668          181 WKTALENAL  189 (804)
Q Consensus       181 WI~AI~~ai  189 (804)
                      |+..++..+
T Consensus       101 Wl~hL~~~~  109 (111)
T cd01225         101 WVELLNANN  109 (111)
T ss_pred             HHHHHHhhc
Confidence            999998754

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=86.25  E-value=35  Score=42.11  Aligned_cols=47  Identities=40%  Similarity=0.456  Sum_probs=23.8

Q ss_pred             hcchhHhhhHHHHHHHH---------HHHHHHHHHHH-HHHHHHHHHHHhHHHHHHh
Q 003668          669 KGNEILEASLESRKKAL---------HERRLALENDV-ARLKDQLQKERDKRTAMEA  715 (804)
Q Consensus       669 ~~~~~~~~~~~~~~~~~---------~~~r~~le~~v-~~l~~~l~~e~~~~~~l~~  715 (804)
                      +.|.-||..+-.-.+++         =|+|++-|++- ..|..||++||.-|..-|.
T Consensus       467 ~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~  523 (697)
T PF09726_consen  467 QENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEE  523 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            45667776443333322         24444444443 2355677777765554443

; GO: 0016021 integral to membrane

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=85.85  E-value=4.9  Score=37.39  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             EEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHH
Q 003668          105 RWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTA  184 (804)
Q Consensus       105 RWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~A  184 (804)
                      ..+.|=.+.|+|-.-....  ...-.-...|..+.+...   .+...-+.+|.|...   .+.+.+||+|+++..+||..
T Consensus        22 v~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni---~D~~~~kNafki~t~---~~s~i~qaes~~~K~eWl~~   93 (100)
T cd01226          22 VMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNV---KDRENAKKVLKLLIF---PESRIYQCESARIKTEWFEE   93 (100)
T ss_pred             EEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEec---CCCcCcCceEEEEeC---CccEEEEeCCHHHHHHHHHH
Confidence            4355555666654321111  111122345555544332   223345667777654   57799999999999999999


Q ss_pred             HHHHh
Q 003668          185 LENAL  189 (804)
Q Consensus       185 I~~ai  189 (804)
                      |+++.
T Consensus        94 le~a~   98 (100)
T cd01226          94 LEQAK   98 (100)
T ss_pred             HHHHh
Confidence            99875

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]

Probab=82.97  E-value=0.88  Score=55.79  Aligned_cols=91  Identities=19%  Similarity=0.239  Sum_probs=56.0

Q ss_pred             eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~  163 (804)
                      ...+|||++....  .+.|.+|||+|.++.+.||++.......-+++...  ....+.        ...+.-+... ...
T Consensus        77 ~~~~g~l~k~~n~--~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~--~~a~i~--------~~~~~~~~~~-~~~  143 (799)
T KOG1737|consen   77 ASLEGILLKWRNY--SKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINL--VTAWIQ--------NGERMDICSV-DGS  143 (799)
T ss_pred             ccccceeeccccc--cCCcccceEEecCcceeeeccCCccccCCCCcccc--cccccc--------cCCCcccchh-hcc
Confidence            4578977765443  47999999999999999999876543211111111  111111        1112111111 111


Q ss_pred             CCcEEEEEecchhhHHHHHHHHHHH
Q 003668          164 DGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       164 dgrty~LQAdSeeE~~eWI~AI~~a  188 (804)
                       -..|...+.+...+..|+.++.-+
T Consensus       144 -~q~~~~~~~~~~~~~~~~~~~~l~  167 (799)
T KOG1737|consen  144 -CQIYLVELSKKLQRQGWLHALELA  167 (799)
T ss_pred             -cchhhhhhhHHHhhcchhhhhhhc
Confidence             356888999999999999999876

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=82.20  E-value=0.027  Score=62.23  Aligned_cols=118  Identities=22%  Similarity=0.312  Sum_probs=78.3

Q ss_pred             hhhhhcchHHHHH---HHHHhhhcchhHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC-
Q 003668          650 IQRLEDTKSDLQR---KIADEVKGNEILEASLESRKKALHERRLA---LENDVARLKDQLQKERDKRTAMEAGLGEFNG-  722 (804)
Q Consensus       650 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~-  722 (804)
                      .+-|++.+.+|+-   .-....-+||-|-..||.|.+||..|-..   |-.--..|...|-+|+.--..|-.|=.+-.| 
T Consensus       420 leelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGs  499 (593)
T KOG4807|consen  420 LEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGS  499 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCC
Confidence            3455666666653   44666778999988999999999877543   4444567888899998765556566555544 


Q ss_pred             CCCCCCCCChhhHHHHhhh-hhhhhHHHHHHHHHHHHHHHHH-HHhhhccCC
Q 003668          723 SFPIPDTIDEKTKVELGEI-AQAETDIINLKQKAKDLRVQLS-EQLEKNDGF  772 (804)
Q Consensus       723 ~~~~~~~~~~~~~~~l~~i-~~~e~~~~~l~~~~~~l~~~l~-~~~~~~~~~  772 (804)
                      +++     ..|.--+||=+ -.-|..|.-|||+|..|...|. -+|...|.|
T Consensus       500 pla-----qgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaS  546 (593)
T KOG4807|consen  500 PLA-----QGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYAS  546 (593)
T ss_pred             ccc-----cCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            221     12222344432 3457788899999999998874 356666654

>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]

Probab=82.06  E-value=2.7  Score=46.57  Aligned_cols=107  Identities=18%  Similarity=0.296  Sum_probs=69.0

Q ss_pred             CCCceEEEeeeEeecCC-CCCCCCceEEEEEeCCeeEEecCCCCCC-CCCCcceeeecCC--eeecCCcceeeecCCCeE
Q 003668           80 AGNAVFKSGPLFISSKG-IGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGG--IDLNNSGSVVVKADKKLL  155 (804)
Q Consensus        80 ~~~~v~KEGyL~~~kKg-~~~ksWkKRWfVL~~~sL~yYKd~~~~~-p~~g~e~~~~L~~--~~l~~s~sV~~~~~Kk~~  155 (804)
                      .+.++..-||..-...+ ..+.+++.+|..|++.+++.|..++-.. .+...+.+..+-.  |.|-..  ....+.+++|
T Consensus       277 v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kd--sd~~D~R~~C  354 (505)
T KOG3549|consen  277 VGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKD--SDTVDSRQHC  354 (505)
T ss_pred             ccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhcc--ccccccccce
Confidence            34468889966544433 3677889999999999999998765321 1111111111111  111110  0123468899


Q ss_pred             EEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668          156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       156 FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~  190 (804)
                      |.+...  .|...+|..+.+.|+..|-.+.+.|+.
T Consensus       355 F~~qs~--~ge~~yfsVEl~seLa~wE~sfq~Atf  387 (505)
T KOG3549|consen  355 FLLQSS--GGEPRYFSVELRSELARWENSFQAATF  387 (505)
T ss_pred             EEEEcC--CCCceEEEEehhhHHHHHHHHHhhHHh
Confidence            988753  577899999999999999999998773

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=80.08  E-value=8  Score=42.39  Aligned_cols=65  Identities=28%  Similarity=0.424  Sum_probs=40.1

Q ss_pred             hhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003668          651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKALH----------ERRLALENDVARLKDQLQKERDKRTAMEA  715 (804)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~r~~le~~v~~l~~~l~~e~~~~~~l~~  715 (804)
                      ..++..-.+|+..|..-++.|+.|+..+..-+.++.          ..|..||.++..|+++|..++..|..|++
T Consensus        50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~  124 (312)
T PF00038_consen   50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN  124 (312)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence            345555566777777777777777766554444333          33445666666667677766666666665

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	804
3fk2_A	246	Crystal Structure Of The Rhogap Domain Of Human Glu		5e-12
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		7e-12
2ee5_A	219	Solution Structure Of The N-Teruminus Extended Rhog		2e-09
2ee4_A	209	Solution Structure Of The Rhogap Domain From Human		4e-09
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		9e-09
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-08
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		3e-08
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-08
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		5e-08
2ngr_B	234	Transition State Complex For Gtp Hydrolysis By Cdc4		2e-07
1f7c_A	231	Crystal Structure Of The Bh Domain From Graf, The G		1e-06
3msx_B	201	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-06
3eap_A	271	Crystal Structure Of The Rhogap Domain Of Arhgap11a		2e-05

>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF 289
            G P+   +      P F+E+ I +IE  G+  EGI R +    ++    R+F+Q     
Sbjct: 54  FGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLD 113
Query: 290 SPEEDAHI--IADCVKYVIRELPSSPVPASCCNALLEARR-TDRGSRVSAMRTAILETFP 346
             E+D  +  +A  +K    ELP   VP +    L+EA +  DR  ++ A++  +L+ FP
Sbjct: 114 LAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALK-EVLKKFP 172
Query: 347 EPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
           + N ++ + ++  +  V+ +   N M++  ++ C  P L+RP
Sbjct: 173 KENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP 214

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 244 TPSFLEKAIRFIEEHGVQVEGILRQA---AYVDDVHRRIREFEQGKTEFSPEEDAHIIAD 300
            P F+++ I  +E+ G+ V+GI R +   A +  +   + + E+   + S  ED H++  
Sbjct: 35  VPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTG 94
Query: 301 CVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILMM 359
            +K   RELP    P S     +EA ++ D  +R+ A+++ +++  P PNR  ++ +   
Sbjct: 95  ALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKS-LVQKLPPPNRDTMKVLFGH 153
Query: 360 MQTVASSKNQNRMSTSAVAACMAPLLLR 387
           +  + +  ++N MST ++     P LLR
Sbjct: 154 LTKIVAKASKNLMSTQSLGIVFGPTLLR 181

>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK--TEFSPEEDAHIIADCV 302
           P F+EK + FIE+ G+  EG+ R +    D     ++F+Q       S E   + +A  +
Sbjct: 38  PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 97
Query: 303 KYVIRELPSSPVPASCCNALLEARRT-DRGSRVSAMRTAILETFPEPNRKLLQRILMMMQ 361
           K    +LP   +P S    LLEA +  D+  R+ A++  I++ F   N  + + ++  + 
Sbjct: 98  KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK-EIVKKFHPVNYDVFRYVITHLN 156
Query: 362 TVASSKNQNRMSTSAVAACMAPLLLRP 388
            V+     N M+   ++ C  P L+RP
Sbjct: 157 RVSQQHKINLMTADNLSICFWPTLMRP 183

>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK--TEFSPEEDAHIIADCV 302
           P F+EK + FIE+ G+  EG+ R +    D     ++F+Q       S E   + +A  +
Sbjct: 28  PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87
Query: 303 KYVIRELPSSPVPASCCNALLEARRT-DRGSRVSAMRTAILETFPEPNRKLLQRILMMMQ 361
           K    +LP   +P S    LLEA +  D+  R+ A++  I++ F   N  + + ++  + 
Sbjct: 88  KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK-EIVKKFHPVNYDVFRYVITHLN 146
Query: 362 TVASSKNQNRMSTSAVAACMAPLLLRP 388
            V+     N M+   ++ C  P L+RP
Sbjct: 147 RVSQQHKINLMTADNLSICFWPTLMRP 173

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Query: 229 VIGRPILLALEDV-DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT 287
           V G P+ + ++      P  +++A+R++  H +   G+ R++  V    + +R+  +G  
Sbjct: 20  VFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSG-VKSRIQALRQMNEGAI 78
Query: 288 EFSPEE--DAHIIADCVKYVIRELPSSPVPASCCNALLEARR-TDRGSRVSAMRTAILET 344
           +    E   A+ +AD +K   R+LP   +        L+  +   +  R+ A++ AI+  
Sbjct: 79  DCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIM-L 137
Query: 345 FPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL 386
            P+ NR++LQ +L  +  V ++  +N+M+ + +A C+AP L 
Sbjct: 138 LPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLF 179

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
           P  L + + +++ H +  EGI R++A    V    +++  G   +F    + H+ A  +K
Sbjct: 28  PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 87
Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
             +RELP   +       ++     D   RV A    +L+T PE N ++L+ +   +  +
Sbjct: 88  TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT-LQVLQTLPEENYQVLRFLTAFLVQI 146
Query: 364 ASSKNQNRMSTSAVAACMAPLLL 386
           ++  +QN+M+ + +A    P LL
Sbjct: 147 SAHSDQNKMTNTNLAVVFGPNLL 169

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
           P  L + + +++ H +  EGI R++A    V    +++  G   +F    + H+ A  +K
Sbjct: 24  PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 83
Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
             +RELP   +       ++     D   RV A    +L+T PE N ++L+ +   +  +
Sbjct: 84  TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT-LQVLQTLPEENYQVLRFLTAFLVQI 142
Query: 364 ASSKNQNRMSTSAVAACMAPLLL 386
           ++  +QN+M+ + +A    P LL
Sbjct: 143 SAHSDQNKMTNTNLAVVFGPNLL 165

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
           P  L + + +++ H +  EGI R++A    V    +++  G   +F    + H+ A  +K
Sbjct: 63  PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 122
Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
             +RELP   +       ++     D   RV A    +L+T PE N ++L+ +   +  +
Sbjct: 123 TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT-LQVLQTLPEENYQVLRFLTAFLVQI 181
Query: 364 ASSKNQNRMSTSAVAACMAPLLL 386
           ++  +QN+M+ + +A    P LL
Sbjct: 182 SAHSDQNKMTNTNLAVVFGPNLL 204

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
           P  L + + +++ H +  EGI R++A    V    +++  G   +F      H+ A  +K
Sbjct: 27  PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPAVILK 86
Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
             +RELP   +       ++     D   RV A    +L+T PE N ++L+ +   +  +
Sbjct: 87  TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT-LQVLQTLPEENYQVLRFLTAFLVQI 145
Query: 364 ASSKNQNRMSTSAVAACMAPLLL 386
           ++  +QN+M+ + +A    P LL
Sbjct: 146 SAHSDQNKMTNTNLAVVFGPNLL 168

>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
           P  L + + +++ H +  EGI  ++A    V    +++  G   +F    + H+ A  +K
Sbjct: 55  PIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 114
Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
             +RELP   +       ++     D   RV A    +L+T PE N ++L+ +   +  +
Sbjct: 115 TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT-LQVLQTLPEENYQVLRFLTAFLVQI 173
Query: 364 ASSKNQNRMSTSAVAACMAPLLL 386
           ++  +QN+M+ + +A    P LL
Sbjct: 174 SAHSDQNKMTNTNLAVVFGPNLL 196

>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase Regulator Associated With Focal Adhesion Kinase Length = 231

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 246 SFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRI------REFEQGKTEFSPEEDAHIIA 299
           S ++K I  +E  G+  +G+ R       V + +      +   + +TE   E +   I 
Sbjct: 39  SIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTIT 98
Query: 300 DCVKYVIRELPSSPVPASCCNALLEARRTD-RGSRVSAMRTAILETFPEPNRKLLQRILM 358
             +K  +R LP   +      + ++A + + + SRVS +  +++   PE NR++L  ++ 
Sbjct: 99  SALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIH-SLVHRLPEKNRQMLHLLMN 157
Query: 359 MMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
            +  VA +  QN M+ + +     P LLRP
Sbjct: 158 HLAKVADNHKQNLMTVANLGVVFGPTLLRP 187

>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 7/178 (3%)
Query: 228 PVIGRPILLALEDV---DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQ 284
           P+ G+   ++L ++   D  P  +   + F+ + G   +GI RQ+A V        +   
Sbjct: 7   PMPGQLFGISLPNICENDNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNS 66
Query: 285 GKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTA--IL 342
           G       E   +IA  +K  +R +P S   +   +  +     D+G+    + T   +L
Sbjct: 67  GVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSV--MDQGNDEEKINTVQRLL 124
Query: 343 ETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDF 400
           +  P  N  LL+ +  ++  +    + N+M+   +A C+AP +L P  +   E+E +F
Sbjct: 125 DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENEF 182

>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Query: 237 ALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFS--PEED 294
           A+ +    PSFL  A   +E+H +  EG+ R++  V  +     + + G+   S  P  D
Sbjct: 76  AVPEYGHIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCD 134
Query: 295 AHIIADCVKYVIRELPSSPVPASCCNALLEARR--TDRGSRVSAMRTAILETFPEPNRKL 352
              IA  +K   RELP   +PA    ALL+A++  T+  ++ + + + +L    +    +
Sbjct: 135 ---IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLA---DHTVHV 188
Query: 353 LQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387
           L+     ++ V+   ++N+M +S +A   AP LL+
Sbjct: 189 LRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQ 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	804
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	3e-32
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	8e-32
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	3e-30
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	3e-29
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	7e-29
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	1e-28
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	2e-27
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	2e-27
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	1e-26
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	2e-26
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	4e-26
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	1e-24
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	2e-24
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	3e-23
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	4e-22
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	5e-18
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	8e-18
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	1e-17
2d9v_A	130	Pleckstrin homology domain-containing protein fami	7e-17
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	1e-13
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	2e-13
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	9e-13
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	9e-13
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	4e-12
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	5e-12
3cxb_B	112	Pleckstrin homology domain-containing family M mem	6e-12
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	9e-12
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	1e-11
2dkp_A	128	Pleckstrin homology domain-containing family A mem	1e-11
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	2e-11
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	2e-11
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	2e-11
2yry_A	122	Pleckstrin homology domain-containing family A mem	3e-11
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	3e-11
2d9y_A	117	Pleckstrin homology domain-containing protein fami	3e-11
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	4e-11
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	4e-11
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	8e-11
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	9e-11
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	1e-10
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	2e-10
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	3e-10
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	3e-10
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	3e-10
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	6e-10
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	6e-10
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	9e-10
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	1e-09
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	2e-09
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	4e-09
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	4e-09
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	6e-09
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	6e-09
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	8e-09
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	9e-09
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	1e-08
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	5e-08
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	5e-08
1wi1_A	126	Calcium-dependent activator protein for secretion,	5e-08
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	1e-07
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	3e-07
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	4e-07
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	1e-06
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	2e-06
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	2e-06
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	2e-06
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	2e-06
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	2e-06
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	7e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-06
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	1e-05
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	2e-04
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	2e-04
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	3e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	4e-04

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score =  123 bits (310), Expect = 3e-32
 Identities = 45/218 (20%), Positives = 87/218 (39%), Gaps = 26/218 (11%)

Query: 223 KPVKFPVIGRP---ILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRI 279
            P+     G     +     + +  P  L + + +++ H +  EGI R++A    V R +
Sbjct: 2   PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVV-REV 60

Query: 280 RE-FEQGKT-EFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAM 337
           ++ +  G   +F      H+ A  +K  +RELP   +       ++     D   RV A 
Sbjct: 61  QQKYNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT 120

Query: 338 RTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIE 397
              +L+T PE N ++L+ +   +  +++  +QN+M+ + +A    P LL           
Sbjct: 121 L-QVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWA--------- 170

Query: 398 TDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435
                  D +  L     A N        LL+   ++F
Sbjct: 171 ------KDAAITL----KAINPINTFTKFLLDHQGELF 198

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score =  123 bits (310), Expect = 8e-32
 Identities = 51/258 (19%), Positives = 97/258 (37%), Gaps = 26/258 (10%)

Query: 189 LAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRP---ILLALEDVDGTP 245
           L Q          +  LK+ +   A          P+     G     +     + +  P
Sbjct: 4   LEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIP 63

Query: 246 SFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQGKT-EFSPEEDAHIIADCVK 303
             L + + +++ H +  EGI R++A    V R +++ +  G   +F    + H+ A  +K
Sbjct: 64  IVLRETVAYLQAHALTTEGIFRRSANTQVV-REVQQKYNMGLPVDFDQYNELHLPAVILK 122

Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
             +RELP   +       ++     D   RV A    +L+T PE N ++L+ +   +  +
Sbjct: 123 TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFLTAFLVQI 181

Query: 364 ASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAI 423
           ++  +QN+M+ + +A    P LL                  D +  L     A N     
Sbjct: 182 SAHSDQNKMTNTNLAVVFGPNLLWA---------------KDAAITL----KAINPINTF 222

Query: 424 VITLLEEYDKIFGEGSAS 441
              LL+   ++F     S
Sbjct: 223 TKFLLDHQGELFPSPDPS 240

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score =  117 bits (295), Expect = 3e-30
 Identities = 43/215 (20%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 223 KPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE- 281
            P+   + G  +    E+ D  P  +   + F+ + G   +GI RQ+A V    R ++E 
Sbjct: 6   SPMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSC-RELKEK 63

Query: 282 FEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTA 340
              G       E   +IA  +K  +R +P S   +   +  +    + +   +++ ++  
Sbjct: 64  LNSGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQ-R 122

Query: 341 ILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDF 400
           +L+  P  N  LL+ +  ++  +    + N+M+   +A C+AP +L P  +   E+E +F
Sbjct: 123 LLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENEF 182

Query: 401 NVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435
                                 ++  L+E   +IF
Sbjct: 183 ----------------TKKVSLLIQFLIENCLRIF 201

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  115 bits (290), Expect = 3e-29
 Identities = 45/224 (20%), Positives = 101/224 (45%), Gaps = 17/224 (7%)

Query: 221 KEKPVKFPVIGRPILLALEDVDGT--PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRR 278
           +    +  V G P+ + ++   G   P  +++A+R++  H +   G+ R++     + + 
Sbjct: 12  ENLYFQGSVFGVPLTVNVQR-TGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRI-QA 69

Query: 279 IRE-FEQGKTEFSPEE-DAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVS 335
           +R+  E      + E   A+ +AD +K   R+LP   +        L+  +   +  R+ 
Sbjct: 70  LRQMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQ 129

Query: 336 AMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP-----LL 390
           A++ AI+   P+ NR++LQ +L  +  V ++  +N+M+ + +A C+AP L          
Sbjct: 130 AIKAAIML-LPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKREN 188

Query: 391 AGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKI 434
           +    ++   ++G      L +  A    A   +  ++ E  K+
Sbjct: 189 SSPRVMQRKQSLGKPDQKDLNENLA----ATQGLAHMIAECKKL 228

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score =  114 bits (288), Expect = 7e-29
 Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 22/219 (10%)

Query: 221 KEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIR 280
            +   +    G P+   +      P F+E+ I +IE  G+  EGI R +    ++    R
Sbjct: 45  TKATWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQR 104

Query: 281 EFEQGKTE--FSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAM 337
           +F+Q         +   + +A  +K    ELP   VP +    L+EA +  DR  ++ A+
Sbjct: 105 QFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHAL 164

Query: 338 RTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIE 397
           +  +L+ FP+ N ++ + ++  +  V+ +   N M++  ++ C  P L+RP         
Sbjct: 165 K-EVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP--------- 214

Query: 398 TDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436
                        + A  A    Q I+   +++    F 
Sbjct: 215 ---------DFSTMDALTATRTYQTIIELFIQQCPFFFY 244

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score =  113 bits (284), Expect = 1e-28
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 24/223 (10%)

Query: 221 KEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIR 280
                +    G P+   +      P F+EK + FIE+ G+  EG+ R +    D    I+
Sbjct: 4   GSSGWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQ-DNIQ 62

Query: 281 E-FEQGKT--EFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSA 336
           + F+Q       S E   + +A  +K    +LP   +P S    LLEA +  D+  R+ A
Sbjct: 63  KQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHA 122

Query: 337 MRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEI 396
           ++  I++ F   N  + + ++  +  V+     N M+   ++ C  P L+RP      + 
Sbjct: 123 LK-EIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRP------DF 175

Query: 397 ETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGS 439
           E              +  +     Q++V T +++    F  G 
Sbjct: 176 EN------------REFLSTTKIHQSVVETFIQQCQFFFYNGE 206

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score =  110 bits (276), Expect = 2e-27
 Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 27/229 (11%)

Query: 216 SVEQLKEK-PVKFPVIGRPILLALEDVDGT-PSFLEKAIRFIEEHGVQVEGILRQAAYVD 273
           S++ L+EK  +K  + G  +    E  + T P F+++ I  +E+ G+ V+GI R +  + 
Sbjct: 5   SLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLA 64

Query: 274 DVHRRIRE-FEQGKT---EFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRT 328
            + +++R    Q +    + S  ED H++   +K   RELP    P S     +EA ++ 
Sbjct: 65  TI-QKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQ 123

Query: 329 DRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
           D  +R+ A++ ++++  P PNR  ++ +   +  + +  ++N MST ++     P LLR 
Sbjct: 124 DNNTRIEAVK-SLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRA 182

Query: 389 LLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437
                 E ET               A    +   I   +L EY KIFG 
Sbjct: 183 ------ENETG------------NMAIHMVYQNQIAELMLSEYSKIFGS 213

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score =  111 bits (279), Expect = 2e-27
 Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 23/205 (11%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQGKTEFSPEEDAHIIADCVK 303
           PSFL  A   +E+  +  EG+ R++  V  + + ++   + G+   S       IA  +K
Sbjct: 84  PSFLVDACTSLED-HIHTEGLFRKSGSVIRL-KALKNKVDHGEGCLS-SAPPCDIAGLLK 140

Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
              RELP   +PA    ALL+A++     +  A    +     +    +L+     ++ V
Sbjct: 141 QFFRELPEPILPADLHEALLKAQQLGTEEKNKATL-LLSCLLADHTVHVLRYFFNFLRNV 199

Query: 364 ASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAI 423
           +   ++N+M +S +A   AP LL+                                  A+
Sbjct: 200 SLRSSENKMDSSNLAVIFAPNLLQT--------------SEGHEKMSSNTEKKLRLQAAV 245

Query: 424 VITLLEEYDKIFGEGSASPEELYSE 448
           V TL++    I       P+ +  +
Sbjct: 246 VQTLIDYASDIGR----VPDFILEK 266

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score =  107 bits (269), Expect = 1e-26
 Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 22/197 (11%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQGKT--EFSPEEDAHIIADC 301
           PS +   +  IE+ G+   G+ R +     V + ++E F + KT    S  +D H I   
Sbjct: 18  PSIVVHCVNEIEQRGLTETGLYRISGCDRTV-KELKEKFLRVKTVPLLSKVDDIHAICSL 76

Query: 302 VKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMM 360
           +K  +R L    +      A +EA   TD  + ++AM  A+ E  P+ NR  L  +++ +
Sbjct: 77  LKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGE-LPQANRDTLAFLMIHL 135

Query: 361 QTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHA 420
           Q VA S    +M  + +A    P ++                    +   +         
Sbjct: 136 QRVAQS-PHTKMDVANLAKVFGPTIVAH---------------AVPNPDPVTMLQDIKRQ 179

Query: 421 QAIVITLLEEYDKIFGE 437
             +V  LL    + + +
Sbjct: 180 PKVVERLLSLPLEYWSQ 196

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score =  107 bits (270), Expect = 2e-26
 Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 35/236 (14%)

Query: 228 PVIGRPILLALE----DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-F 282
           PV         E          S ++K I  +E  G+  +G+ R       V +++    
Sbjct: 17  PVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRV-QKLLSIL 75

Query: 283 EQGKT------EFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVS 335
              KT      E   E +   I   +K  +R LP   +      + ++A +  ++ SRVS
Sbjct: 76  MDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVS 135

Query: 336 AMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECE 395
            +  +++   PE NR++L  ++  +  VA +  QN M+ + +     P LLRP       
Sbjct: 136 EIH-SLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRP------- 187

Query: 396 IETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASPEELYSESEL 451
                        + + A         ++  L+E ++KIF      PE   S S+L
Sbjct: 188 -----------QEETVAAIMDIKFQNIVIEILIENHEKIFNT---VPETPPSNSQL 229

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score =  105 bits (264), Expect = 4e-26
 Identities = 40/216 (18%), Positives = 85/216 (39%), Gaps = 28/216 (12%)

Query: 228 PVIGRPILLALEDVDGT--PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQ 284
            V     L  L     T  P  ++  IR IE  G+  EG+ R + + D +   ++  F++
Sbjct: 7   KVYSCD-LTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLI-EDVKMAFDR 64

Query: 285 GKTEF----SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRT 339
              +     +  ED +II   +K   R+LP   +        +E+ +  D   ++  +  
Sbjct: 65  DGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLH- 123

Query: 340 AILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETD 399
             L+  P  + + L+ ++  ++ V   + +N M+   +     P L+R       E++  
Sbjct: 124 EALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRS-----PELDA- 177

Query: 400 FNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435
                      + A     + + +V  L++  D +F
Sbjct: 178 -----------MAALNDIRYQRLVVELLIKNEDILF 202

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score =  102 bits (256), Expect = 1e-24
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 27/227 (11%)

Query: 228 PVIGRPILLALEDVDGT--PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQ 284
            V G  +   L +  G   P  L+    FIE +G+ V+GI R +    ++ +R+R  F+ 
Sbjct: 20  RVFGCDLGEHLLN-SGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNI-QRLRHEFDS 76

Query: 285 GKTEF----SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRT 339
                       +D H +    K   RELP+  +         +A        R+  +  
Sbjct: 77  EHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIH- 135

Query: 340 AILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETD 399
            +++  P P+ + L+ ++  +  +A   +   M    +A   AP LLR         +  
Sbjct: 136 DVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRS--------KQI 187

Query: 400 FNVGGDGSAQLLQAAAAANHAQAIVI-TLLEEYDKIF-GEGSASPEE 444
            +    G+A  ++        Q++V+  +L   D +F G  S + +E
Sbjct: 188 ESACFSGTAAFMEV-----RIQSVVVEFILNHVDVLFSGRISMAMQE 229

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score =  106 bits (266), Expect = 2e-24
 Identities = 40/216 (18%), Positives = 85/216 (39%), Gaps = 28/216 (12%)

Query: 228 PVIGRPILLALEDVDGT--PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQ 284
            V     L  L     T  P  ++  IR IE  G+  EG+ R + + D +   ++  F++
Sbjct: 268 KVYSCD-LTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLI-EDVKMAFDR 325

Query: 285 GKTEF----SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRT 339
              +     +  ED +II   +K   R+LP   +        +E+ +  D   ++  +  
Sbjct: 326 DGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLH- 384

Query: 340 AILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETD 399
             L+  P  + + L+ ++  ++ V   + +N M+   +     P L+R       E++  
Sbjct: 385 EALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRS-----PELDA- 438

Query: 400 FNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435
                      + A     + + +V  L++  D +F
Sbjct: 439 -----------MAALNDIRYQRLVVELLIKNEDILF 463

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score = 97.8 bits (244), Expect = 3e-23
 Identities = 32/232 (13%), Positives = 80/232 (34%), Gaps = 32/232 (13%)

Query: 220 LKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQ--AAYVDDVHR 277
           ++    +  +    +       D  P  L K +  IE+ G++   + R   ++ +     
Sbjct: 1   MEADVEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL----A 56

Query: 278 RIRE-FEQGKTEFSPEE-DAHIIADCVKYVIRELPSSPVPASCCNALLEA--RRTDRGSR 333
            +R+  +        E  D H++AD  K  + +LP+  +PA+  + ++            
Sbjct: 57  ELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEY 116

Query: 334 VSAMRTAI-LETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAG 392
           +  ++  I   + P      LQ +L     ++ + ++N ++   ++   +P+L R     
Sbjct: 117 IQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRF---- 172

Query: 393 ECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASPEE 444
                         S+          +   ++  L+           A P +
Sbjct: 173 -----------SAASSD------NTENLIKVIEILISTEWNERQPAPALPPK 207

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score = 98.1 bits (244), Expect = 4e-22
 Identities = 18/145 (12%), Positives = 54/145 (37%), Gaps = 9/145 (6%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQGKTEFSPEEDAHIIADCVK 303
           P  +   +  + ++    E + +     +++ ++I +  +      +     H +A+ + 
Sbjct: 200 PKEIWLLVDHLFKYACHQEDLFQTPGMQEEL-QQIIDCLDTSI-PETIPGSNHSVAEALL 257

Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
             +  LP   +        L++            R  ++   P  +R + + ++  ++ +
Sbjct: 258 IFLEALPEPVICYELYQRCLDSAY-----DPRICR-QVISQLPRCHRNVFRYLMAFLREL 311

Query: 364 ASSKNQNRMSTSAVAACMAPLLLRP 388
                 N ++ + +A     LLLRP
Sbjct: 312 LKFSEYNSVNANMIATLFTSLLLRP 336

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 79.5 bits (196), Expect = 5e-18
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 80  AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
              A  KSG L    +      WKK WF L     + +  D +    +  +V++ +  I+
Sbjct: 1   GSMAFVKSGWLL--RQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIED-KVHMPMDCIN 57

Query: 140 L---NNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
           +              K    +L    RDG+  +L AES +D   WK  L+++
Sbjct: 58  IRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score = 81.8 bits (202), Expect = 8e-18
 Identities = 40/191 (20%), Positives = 62/191 (32%), Gaps = 20/191 (10%)

Query: 242 DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADC 301
           D  P  L K +  IE  G+  E   R           + + +Q         D   +AD 
Sbjct: 38  DVAPPLLVKLVEAIERTGLDSESHYRPELPAPRTDWSLSDVDQ--------WDTAALADG 89

Query: 302 VKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQ 361
           +K  +  LP+  V          A R   G    A+      T P      L+ +L  + 
Sbjct: 90  IKSFLLALPAPLVTPEASAEARRALREAAGPVGPALE---PPTLPLHRALTLRFLLQHLG 146

Query: 362 TVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQ 421
            VA        +  A+ A   PLLLR          +    GG        +  + +   
Sbjct: 147 RVARRAPALGPAVRALGATFGPLLLRA-----PPPPSSPPPGGAPD----GSEPSPDFPA 197

Query: 422 AIVITLLEEYD 432
            +V  LL+E+ 
Sbjct: 198 LLVEKLLQEHL 208

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 78.5 bits (193), Expect = 1e-17
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 79  RAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGI 138
           +    V + G L I++ GI     K+ WF+LT  +L +++ D     +K  +  L++  +
Sbjct: 7   QDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDD----EEKEKKYMLSVDNL 62

Query: 139 DLNNSGSVVVKADKKLLTVLFPDGR----DGRAFTLKAESLEDLYDWKTALENA 188
            L +     + + K +  +   + R    D R   L  E+ E++  WK +   A
Sbjct: 63  KLRDVEKGFMSS-KHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 76.9 bits (189), Expect = 7e-17
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 80  AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
             + + + G L+   +      WK+ WF L     + +  D +A  ++   V +     D
Sbjct: 4   GSSGLVRGGWLWR--QSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDR-VVIHFNVRD 60

Query: 140 LNNSGS---VVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
           +        V     +    +L  + R+G    L AE+ +D   WKTAL  A +     G
Sbjct: 61  IKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAG 120

Query: 197 SATGQ 201
           +    
Sbjct: 121 ATVPS 125

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 20/128 (15%)

Query: 78  TRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG 137
           +   +   K G  ++  +     +W++R+F+L    L +++ +    P          G 
Sbjct: 2   SSGSSGPIKMG--WLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKP---------QGC 50

Query: 138 IDLNNSGSVVVKADK--------KLLTVLFPDGRDG-RAFTLKAESLEDLYDWKTALENA 188
           + L       +  +         +++   +   R G  ++ L A S  ++ +W   L   
Sbjct: 51  MYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRV 110

Query: 189 LAQAPSTG 196
               PS+G
Sbjct: 111 AGSGPSSG 118

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 66.9 bits (163), Expect = 2e-13
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 95  KGIGWTSWKKRWFILT--HTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADK 152
                  + +R+FIL      L+++  +P  +          +G + L     V +   K
Sbjct: 25  DNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGA----GAVGSLQLTYISKVSIATPK 80

Query: 153 KL--LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
           +       F      + + L+A   +DL DW  AL  A    PS+G
Sbjct: 81  QKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKSGPSSG 126

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 64.3 bits (157), Expect = 9e-13
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 78  TRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG 137
           +   +   KSG L   S   G   ++KRW      S+ ++ ++               G 
Sbjct: 2   SSGSSGKVKSGWLDKLS-PQGKRMFQKRWVKFDGLSISYYNNEKEMYS---------KGI 51

Query: 138 IDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGS 197
           I L+   +V V+ D K   V+       R F  + E  E+  DW + L NAL     T  
Sbjct: 52  IPLSAISTVRVQGDNK-FEVVTTQ----RTFVFRVEKEEERNDWISILLNALKSQSLTSQ 106

Query: 198 A 198
           +
Sbjct: 107 S 107

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 65.1 bits (158), Expect = 9e-13
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 29/134 (21%)

Query: 81  GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDL 140
            ++V + G L I     G+ +W +RW +L+   + ++            +    +G I+L
Sbjct: 2   NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTY------PDDEKRKNPIGRINL 55

Query: 141 NNSGSVVV-----------------------KADKKLLTVLFPDGRDGRAFTLKAESLED 177
            N  S  +                       + D++ L     D        L A++ E+
Sbjct: 56  ANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEE 115

Query: 178 LYDWKTALENALAQ 191
              W   L   L  
Sbjct: 116 RDLWMQKLNQVLVD 129

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 15/118 (12%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS 145
           K G L   S GI    W++R   + +  L    +  +  P            ++L     
Sbjct: 12  KKGYLLKKSDGIR-KVWQRRKCSVKNGILTISHATSNRQP----------AKLNLLTCQV 60

Query: 146 VVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNG 203
                DKK   ++  +    R +  +AE  +D   W + L N+  +A +   +   +G
Sbjct: 61  KPNAEDKKSFDLISHN----RTYHFQAEDEQDYVAWISVLTNSKEEALTMAFSGPSSG 114

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 4e-12
 Identities = 62/481 (12%), Positives = 140/481 (29%), Gaps = 159/481 (33%)

Query: 429 EEYDKIFGEGSA-------------SPEELYSESELSGSGTEEATDDD-----ESYEDDD 470
           EE D I     A               EE+  +        EE    +        + + 
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF------VEEVLRINYKFLMSPIKTEQ 102

Query: 471 QDGATPESDAYTD--DDLDNASS----------------RSCSES------------GES 500
           +   +  +  Y +  D L N +                 R                   S
Sbjct: 103 RQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 501 GDSV----VYKDKKNIAPF---LYYVLKMQDVGVGSKSPE------RNDNSEINQNPSS- 546
           G +     V    K        ++++    ++     SPE      +    +I+ N +S 
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWL----NLK-NCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 547 TSHEKALPQN-EDVKDSKN--IQNQSENNSSRQVNESAELLV--DVSSGTSSE-FKLNCQ 600
           + H   +      ++      ++++   N          LLV  +V +  +   F L+C+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENC---------LLVLLNVQNAKAWNAFNLSCK 267

Query: 601 SPKSCLEKSSPVSNESVYGSKRPTVWGRTAARKNLSMESI-DGPSDNEVE---IQRLEDT 656
                L  +          +             ++S++      + +EV+   ++ L+  
Sbjct: 268 I----LLTTRFKQVTDFLSAAT---------TTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 657 KSDLQRK-----------IADEVK-GNEILEASLESRKKALHERRLALENDVARLKDQLQ 704
             DL R+           IA+ ++ G    +         L      +E+ +  L+    
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLEPAEY 371

Query: 705 KERDKRTAMEAGLGEFNGSFPIPDTI-----DEKTKVELGEIAQAETDIINLKQKAKDLR 759
           ++   R ++      F  S  IP  +      +  K ++  +         ++++ K+  
Sbjct: 372 RKMFDRLSV------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 760 -----VQLSEQLEKNDGFVGDSSNQLHQTSTKLYAL---------------DYFYFFF-Y 798
                + L  +++  +         LH++    Y +                YFY    +
Sbjct: 426 ISIPSIYLELKVKLEN------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 799 H 799
           H
Sbjct: 480 H 480

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 9e-07
 Identities = 41/271 (15%), Positives = 80/271 (29%), Gaps = 70/271 (25%)

Query: 129 SEVNLTL---GGIDLNNSG-SVVVKA---DKKLLTVLFPDGRDGRAF--TL-KAESLEDL 178
              N+ +    G     SG + V        K+             F   L    S E +
Sbjct: 149 PAKNVLIDGVLG-----SGKTWVALDVCLSYKVQCK-MDFK----IFWLNLKNCNSPETV 198

Query: 179 YDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPI---L 235
            +    L+  L Q          N   ++D +      +  ++ +  +  +  +P    L
Sbjct: 199 LE---MLQKLLYQI-------DPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCL 247

Query: 236 LALEDV-DGTPSFLEKAIRFIEEHGVQVEGIL---RQAAYVDDV------HRRIREFEQG 285
           L L +V +           F      +   IL   R     D +      H  +      
Sbjct: 248 LVLLNVQN--AKAWNA---F--NLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 286 KTEFSPEEDAHIIADCVKYVIRELPS-----SPVPASCCNALL--EARRTDRGSRVSAMR 338
               +P+E   ++   +    ++LP      +P   S     +       D    V+  +
Sbjct: 298 ---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 339 -TAILETF-----PEPNRKLLQRILMMMQTV 363
            T I+E+      P   RK+  R+ +   + 
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 96/636 (15%), Positives = 189/636 (29%), Gaps = 189/636 (29%)

Query: 232 RPILLALEDVD---GTPSFLEKAIRFIE------EHGVQ--VEGILRQAAY---VDDVHR 277
           + IL + E++D    +   +   +R         E  VQ  VE +LR   Y   +  +  
Sbjct: 43  KSIL-SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKT 100

Query: 278 RIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAM 337
             R+       +  + D       +    +      V               R      +
Sbjct: 101 EQRQPSMMTRMYIEQRDR------LYNDNQVFAKYNVS--------------RLQPYLKL 140

Query: 338 RTAILETFPEPNRKLLQRILM--MMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECE 395
           R A+LE  P  N      +L+  +   + S K     +  A+  C++  +   +   + +
Sbjct: 141 RQALLELRPAKN------VLIDGV---LGSGK-----TWVALDVCLSYKVQCKM---DFK 183

Query: 396 IETDF--NVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASPEELYSESELSG 453
           I   F  N+    S + +           ++  LL + D  +   S     +        
Sbjct: 184 I---FWLNLKNCNSPETVLE---------MLQKLLYQIDPNWTSRSDHSSNIKLRIH--- 228

Query: 454 SGTEEATD--DDESYE------DDDQDGATPES------------DAYTDDDLDNASSRS 493
           S   E       + YE       + Q+     +                 D L  A   +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA--TT 286

Query: 494 CSESGESGDSVVYKDK-KNIAPFLYYV-LKMQDVGVGSKSPERNDNSEINQ-NPSSTSHE 550
              S +     +  D+ K++   L Y+  + QD+      P      E+   NP   S  
Sbjct: 287 THISLDHHSMTLTPDEVKSL--LLKYLDCRPQDL------PR-----EVLTTNPRRLSII 333

Query: 551 KALPQNEDVKDSKNIQNQSENNSSRQVNESAELLVDVSSGTSSEFKLNCQSP---KSCLE 607
                   ++D     +  ++ +  ++      +++ S        LN   P   +   +
Sbjct: 334 AES-----IRDGLATWDNWKHVNCDKLTT----IIESS--------LNVLEPAEYRKMFD 376

Query: 608 KSSPVSNESVYGSKRPT-----VWGRTAARKNLSMESIDGPSDNEVEIQRLEDTKSDLQR 662
           + S V   S      PT     +W           + I   SD  V + +L    S +++
Sbjct: 377 RLS-VFPPSA---HIPTILLSLIWF----------DVI--KSDVMVVVNKLHK-YSLVEK 419

Query: 663 KIADEVKGNEILEASLESRKK-----ALHERRLALENDVARLKDQLQKERDKRT------ 711
           +  +      I    LE + K     ALH R + ++         + K  D         
Sbjct: 420 QPKESTIS--IPSIYLELKVKLENEYALH-RSI-VD------HYNIPKTFDSDDLIPPYL 469

Query: 712 -----------AMEAGLGEFNGSFPIP----DTIDEKTKVELGEIAQAETDIINLKQKAK 756
                             E    F +       +++K + +      A   I+N  Q+ K
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQQLK 528

Query: 757 DLRVQLSEQLEKNDGFVGDSSNQLHQTSTKLYALDY 792
             +  + +   K +  V    + L +    L    Y
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 15/119 (12%)

Query: 80  AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
             +    SG  ++         WK  WF++ +  L  + +               L    
Sbjct: 4   GSSGSTMSG--YLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAA---------LESQP 52

Query: 140 LNNSGSVVVKADKKLLTV--LFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
           L      +VK +     V  L   G     +  KA+       W  A +      PS+G
Sbjct: 53  LLGFTVTLVKDENSESKVFQLLHKGM--VFYVFKADDAHSTQRWIDAFQEGTVSGPSSG 109

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 12/113 (10%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
             + G L    KG  + +WK  W +L    + F++      P          G I L  S
Sbjct: 5   RIREGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSP---------KGMIPLKGS 53

Query: 144 GSVVVKADKKLLTVLF-PDGRDGRAFTLKAESLEDLYDWKTALENALAQAPST 195
                  D      +F       +    +A  LE+   W   +  A+      
Sbjct: 54  TLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIEGL 106

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 19/115 (16%)

Query: 86  KSGPLFI--SSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           K G L     +  +G   WK  + +L++  L  +      IP            +++   
Sbjct: 2   KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPL---------LSVNMGGE 52

Query: 144 GSVVVKADKK-----LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAP 193
                +            V+     D     L AES  ++ +W   L  A+++  
Sbjct: 53  QCGGCRRANTTDRPHAFQVILS---DRPCLELSAESEAEMAEWMQHLCQAVSKGV 104

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 82  NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
           + V K G +    KG    +W +RWF+L    + ++ S+               G I L+
Sbjct: 6   SGVLKQGYMM--KKGHRRKNWTERWFVLKPNIISYYVSEDLKDK---------KGDILLD 54

Query: 142 NSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL------AQAPST 195
            +  V    DK     LF      + F + A   +   +W  A+ + +      +  PS+
Sbjct: 55  ENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGSSGPSS 114

Query: 196 G 196
           G
Sbjct: 115 G 115

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 22/154 (14%)

Query: 67  GPPPGPNDHRITRAGNAVFKSGPLF----ISSKGIGWTSWKKRWFILTHTS-----LVFF 117
           G         +      + K G L+     S+  +   S+K+R+F L         L F+
Sbjct: 1   GSSGSSGAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFY 60

Query: 118 RSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKK--LLTVLFPDGRDGRAFTLKAESL 175
           + +  +   KGS        I L++   VV     +     +   D      + L A+S 
Sbjct: 61  KDEKISKEPKGS--------IFLDSCMGVVQNNKVRRFAFELKMQDKSS---YLLAADSE 109

Query: 176 EDLYDWKTALENALAQAPSTGSATGQNGILKNDK 209
            ++ +W T L   L           +NG    D 
Sbjct: 110 VEMEEWITILNKILQLNFEAAMQEKRNGDSHEDD 143

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 24/141 (17%)

Query: 68  PPPGPNDHRITRAGNA-VFKSGPLFISSK--GIGWTSWKKRWFILTHTSLVFFRSDPSAI 124
              G   + I R  NA V + G L+   K    G   WKKRWF+L+   L ++R +    
Sbjct: 4   GSSGKRSNSIKRNPNAPVVRRGWLY---KQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEG 60

Query: 125 PQKGSEVNLTLGGIDLNNSGSVVVKADKKL-----LTVLFPDGRDGRAFTLKAESLEDLY 179
                     LG I L +    ++ ++  +          P   + R +    ++ +++ 
Sbjct: 61  I---------LGSILLPSFQIALLTSEDHINRKYAFKAAHP---NMRTYYFCTDTGKEME 108

Query: 180 DWKTALENALAQAPSTGSATG 200
            W  A+ +A A   ++G ++G
Sbjct: 109 LWMKAMLDA-ALVQTSGPSSG 128

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 20/115 (17%)

Query: 83  AVFKSGPLF--ISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDL 140
           +V K G L           + W+KRW +++     ++ ++ S  P          G   +
Sbjct: 2   SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQP---------KGTFLI 52

Query: 141 NNSGSVVVKADKK------LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189
                 +    ++         +   D R    +   A S  +  DW   +   L
Sbjct: 53  KGYSVRMAPHLRRDSKKESCFELTSQDRRT---YEFTATSPAEARDWVDQISFLL 104

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 61.7 bits (149), Expect = 2e-11
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 13/124 (10%)

Query: 67  GPPPGPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ 126
               G    +IT     ++  G L I  K  G+  ++  W  L  T+L F+    S I  
Sbjct: 3   SGSSGQERLKITAL--PLYFEGFLLI--KRSGYREYEHYWTELRGTTLFFYTDKKSIIY- 57

Query: 127 KGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALE 186
                   +  +D+ +   +  +   +     F          LK E+ E   +W+  + 
Sbjct: 58  --------VDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFIL 109

Query: 187 NALA 190
               
Sbjct: 110 TVTE 113

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 87  SGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV 146
            G L         T W+ RWF+L +  L ++ S       +      + G I +      
Sbjct: 2   EGVL--YKWTNYLTGWQPRWFVLDNGILSYYDS-------QDDVCKGSKGSIKMAVCEIK 52

Query: 147 VVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
           V  AD   + ++ P     + F +KA +  +   W  AL ++ A    T 
Sbjct: 53  VHSADNTRMELIIP---GEQHFYMKAVNAAERQRWLVALGSSKASLTDTR 99

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 23/132 (17%)

Query: 65  PPGPPPGPNDHRITRAGNA-VFKSGPLFISSK--GIGWTSWKKRWFILTHTSLVFFRSDP 121
             G   G   H + R  NA V K+G LF   K    G   W KRWF+L    L +++ + 
Sbjct: 2   SSGSSGGKRSHSMKRNPNAPVTKAGWLF---KQASSGVKQWNKRWFVLVDRCLFYYKDEK 58

Query: 122 SAIPQKGSEVNLTLGGIDLNNSGSVVVKADKK-----LLTVLFPDGRDGRAFTLKAESLE 176
                        LG I L +     V+                     R +   AES E
Sbjct: 59  EESI---------LGSIPLLSFRVAAVQPSDNISRKHTFKAEHA---GVRTYFFSAESPE 106

Query: 177 DLYDWKTALENA 188
           +   W  A+  A
Sbjct: 107 EQEAWIQAMGEA 118

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 27/131 (20%)

Query: 78  TRAGNAVFKSGPLFISSKGIGWTSWKKRWFIL--THTSLVFFRSDPSAIPQKGSEVNLTL 135
           +   +     G L+   KG     WK RWF+L  T   L ++                  
Sbjct: 2   SSGSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTEC---------K 50

Query: 136 GGIDLNNSGSVVV----------KADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTAL 185
           G IDL    +V              +K    V        R +   A+ +     W   +
Sbjct: 51  GVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR----RVYNFCAQDVPSAQQWVDRI 106

Query: 186 ENALAQAPSTG 196
           ++ L+  PS+G
Sbjct: 107 QSCLSSGPSSG 117

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 30/126 (23%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 80  AGNAVFKSGPLFISSK--GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG 137
               V K+G LF   K    G   W KRWF+L    L +++ +              LG 
Sbjct: 7   GNAPVTKAGWLF---KQASSGVKQWNKRWFVLVDRCLFYYKDEKEESI---------LGS 54

Query: 138 IDLNNSGSVVVKADKK-----LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA--LA 190
           I L +     V+                     R +   AES E+   W  A+  A  + 
Sbjct: 55  IPLLSFRVAAVQPSDNISRKHTFKAEHA---GVRTYFFSAESPEEQEAWIQAMGEAARVQ 111

Query: 191 QAPSTG 196
             PS+G
Sbjct: 112 SGPSSG 117

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 62.7 bits (152), Expect = 4e-11
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 17/121 (14%)

Query: 78  TRAGNAVFKSGPLF---ISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLT 134
            R+     K G L      S  +   +WKKRWF+L  + L++F +D              
Sbjct: 52  FRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKL--------- 102

Query: 135 LGGIDLNNSGSVVVKADKK-LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAP 193
            G +++ ++  ++   +K+  + ++  D    R F L AES ED   W + L    +   
Sbjct: 103 KGTVEVRSAKEIIDNTNKENGIDIIMAD----RTFHLIAESPEDASQWFSVLSQVHSSTD 158

Query: 194 S 194
            
Sbjct: 159 Q 159

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 13/117 (11%)

Query: 80  AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
             + +  S  L +         WK RW  +    L F++          +   +    + 
Sbjct: 4   GSSGLETSSYLNVLVNS----QWKSRWCSVRDNHLHFYQDR--------NRSKVAQQPLS 51

Query: 140 LNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
           L     VV       L       +      L+A+S E++  W   L +     PS+G
Sbjct: 52  LVGC-EVVPDPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESGSGPSSG 107

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 59.1 bits (143), Expect = 8e-11
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 10/124 (8%)

Query: 78  TRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG 137
           +   +     G L         T W+ R+F+L + + +           +        G 
Sbjct: 2   SSGSSGENVYGYL--MKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKP-----RGT 54

Query: 138 IDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGS 197
           + L  +       D    TV    G     + L+A   ++   W + L+           
Sbjct: 55  LQLAGAVISPSDEDSHTFTVNAASGE---QYKLRATDAKERQHWVSRLQICTQHHTEAIG 111

Query: 198 ATGQ 201
               
Sbjct: 112 KNNS 115

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 59.0 bits (143), Expect = 9e-11
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%)

Query: 79  RAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGI 138
            A +   K G  +++ +G    +WK RWF L    L +F+   S  P         +  +
Sbjct: 13  TAPSLGTKEG--YLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEP---------IRIL 61

Query: 139 DLNNSGSVVVKADKK---LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
           DL    +V     ++      ++FP     R F L A++  +  +W   L   L+Q 
Sbjct: 62  DLTECSAVQFDYSQERVNCFCLVFPF----RTFYLCAKTGVEADEWIKILRWKLSQI 114

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 59.7 bits (144), Expect = 1e-10
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 16/121 (13%)

Query: 82  NAVFKSGPLF---ISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGI 138
                   L       K     ++K+R F+LT + L ++        +KG         I
Sbjct: 13  FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGF--------I 64

Query: 139 DLNNSGSV-VVKADKKLLTV----LFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAP 193
           D++    V +VK D  ++       F    D     + A S +    W   L+  +    
Sbjct: 65  DVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNN 124

Query: 194 S 194
           +
Sbjct: 125 N 125

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 21/121 (17%)

Query: 82  NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
           +AV K+G  +   +G    +WK+R+F L   ++ +F+S+    P         L  I L 
Sbjct: 12  SAVIKAG--YCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEP---------LRVIPLK 60

Query: 142 NSGSVVVKADKKLL------TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPST 195
               V       ++       ++       R F ++A+S E+++ W  A+  A+      
Sbjct: 61  EVHKVQECKQSDIMMRDNLFEIVTTS----RTFYVQADSPEEMHSWIKAVSGAIVAQRGP 116

Query: 196 G 196
           G
Sbjct: 117 G 117

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 19/139 (13%)

Query: 67  GPPPGPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ 126
           G                V K G L    +G    +WK R F+L          DPS    
Sbjct: 1   GSSGSSGSLSTVELSGTVVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPS---- 54

Query: 127 KGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR---------DGRAFTLKAESLED 177
              E N  +GG  L  S  V    D  + T +  + +         D   + ++A S  +
Sbjct: 55  --KEENRPVGGFSLRGS-LVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAE 111

Query: 178 LYDWKTALENALAQAPSTG 196
             +W  A++      PS+G
Sbjct: 112 RAEWIEAIKKLT-SGPSSG 129

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           V + G L  S        W+ RW +L + +L +++S       +        G I L+ +
Sbjct: 1   VERCGVL--SKWTNYIHGWQDRWVVLKNNALSYYKS-------EDETEYGCRGSICLSKA 51

Query: 144 GSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
                  D+    +   D      + L+A+  +    W  A+E  
Sbjct: 52  VITPHDFDECRFDISVND----SVWYLRAQDPDHRQQWIDAIEQH 92

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 18/128 (14%)

Query: 75  HRITRAGNA-VFKSGPLFISSK--GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEV 131
           + + R  N  V   G L    K    G   WK+RWF+L+   L +++             
Sbjct: 1   NALRRDPNLPVHIRGWLH---KQDSSGLRLWKRRWFVLSGHCLFYYKDSREESV------ 51

Query: 132 NLTLGGIDLNNSGSVVVKADKKLLT--VLFPDGRDGRAFTLKAESLEDLYDWKTALENA- 188
              LG + L +                    +    R + L A++LEDL  W  AL  A 
Sbjct: 52  ---LGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS 108

Query: 189 LAQAPSTG 196
            A+    G
Sbjct: 109 RAEGDDYG 116

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 56.9 bits (137), Expect = 6e-10
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 83  AVFKSGPLFISSKGIGWTSWKKRWFILTH-TSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
           A+ K G L    +G    +W+ R+F+L +  + + ++  P  + Q+ +     L    + 
Sbjct: 7   AIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAP----LNNFSVA 60

Query: 142 NSGSVVVKADKK-LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGS 197
               +  +  +     +           T   E+ E+  +W TA++           
Sbjct: 61  QCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQEE 117

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 57.2 bits (138), Expect = 6e-10
 Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 25/138 (18%)

Query: 66  PGPPPGPNDHRITRAGNAVFKSGPLF--ISSKGIGWTSWKKRWFILTHTSLVFFRSDPSA 123
            G P  P      +    V K+G L             W+KRW  L+ T   ++ SD   
Sbjct: 4   VGSPGIP-----AQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDK 58

Query: 124 IPQKGSEVNLTLGGIDLNNSGSVVVKADKK------LLTVLFPDGRDGRAFTLKAESLED 177
             +         G   ++     +    +K         +  P   D R +   A S +D
Sbjct: 59  QQK---------GEFAIDGYDVRMNNTLRKDGKKDCCFEICAP---DKRIYQFTAASPKD 106

Query: 178 LYDWKTALENALAQAPST 195
             +W   L+  L    S 
Sbjct: 107 AEEWVQQLKFILQDLGSD 124

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 56.1 bits (135), Expect = 9e-10
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 25/131 (19%)

Query: 80  AGNAVFKSGPLF------ISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNL 133
             +     G L          K     SW+  + +L   SL F++   +A          
Sbjct: 4   GSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYH--- 60

Query: 134 TLGGIDLNNSGSVVVKADK--------KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTAL 185
             G + ++ + +    A          KL        +DG+ +  +A+   ++  W   +
Sbjct: 61  --GEVPVSLARAQGSVAFDYRKRKHVFKLGL------QDGKEYLFQAKDEAEMSSWLRVV 112

Query: 186 ENALAQAPSTG 196
             A+A  PS+G
Sbjct: 113 NAAIASGPSSG 123

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 10/93 (10%), Positives = 31/93 (33%)

Query: 100 TSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159
           +SW + W +L+  +L+++ +       +    +     + +      +    +       
Sbjct: 22  SSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQL 81

Query: 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
            +   G  +  +  S      W   L++A   +
Sbjct: 82  NNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 29/119 (24%)

Query: 95  KGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKK- 153
            G    +WK+RWFILT   L +F       P          G I L N     V   +K 
Sbjct: 14  LGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---------RGIIPLENLSIREVLDPRKP 64

Query: 154 -LLTVLFPDGRDG------------------RAFTLKAESLEDLYDWKTALENALAQAP 193
               +  P  +                      + + A S E+  +W  +++ ++++ P
Sbjct: 65  NCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDP 123

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 67  GPPPGPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ 126
             P   +   + +      K G +  +        ++KRWF +    L++F+    A  +
Sbjct: 252 AFPGASDADLVPKLSRNYLKEGYMEKTGPK-QTEGFRKRWFTMDDRRLMYFKDPLDAFAR 310

Query: 127 KGSEVNLTLGGIDLNNSGSVVVKADKKL--LTVLFPDGRDGRAFTLKAESLEDLYDWKTA 184
               +     G  + +      +       +T++ PD    R F    E+  D  +W  A
Sbjct: 311 GEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPD----RKFLFACETESDQREWVAA 366

Query: 185 LENALAQA 192
            + A+ + 
Sbjct: 367 FQKAVDRP 374

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 21/130 (16%)

Query: 77  ITRAGNAVFKSGPL-----FISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP---QKG 128
           +      + K+G L         K +    W   W +L    L FF+   ++     ++ 
Sbjct: 1   MAVRTKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQP 60

Query: 129 SEVNLTLGGIDLNNSGSVVVKADK-------KLLTVLFPDGRDGRAFTLKAESLEDLYDW 181
           S+ +     ++L  +       DK       +L +      RDG  + ++ +S   +  W
Sbjct: 61  SKFSTPEYTVELRGATLSWAPKDKSSRKNVLELRS------RDGSEYLIQHDSEAIISTW 114

Query: 182 KTALENALAQ 191
             A+   + +
Sbjct: 115 HKAIAQGIQE 124

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 82  NAVFKSGPLFISSKGIGWTSWKKRWFILT--HTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
             + K G L    +G    +WK R FIL      L ++    +  P         LG I 
Sbjct: 5   GVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP---------LGAIH 53

Query: 140 LNNSGSVVVKADKKLLTVLFPDG-----RDGRAFTLKAESLEDLYDWKTALENA 188
           L       V+++         +       D   + L+A + ++  +W  A++ A
Sbjct: 54  LRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 54.0 bits (129), Expect = 6e-09
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 34/141 (24%)

Query: 78  TRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG 137
           +   + +  +  L I        SW K W +L    L+ +++  +            +G 
Sbjct: 2   SSGSSGIVMADWLKIRGT---LKSWTKLWCVLKPGVLLIYKTQKNGQW---------VGT 49

Query: 138 IDLNNSGSVVVKADKK--LLTVLFPDGRDG--------------------RAFTLKAESL 175
           + LN    +   + K      +  P  +                          ++A S 
Sbjct: 50  VLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSE 109

Query: 176 EDLYDWKTALENALAQAPSTG 196
            D   W  ALE AL   PS+G
Sbjct: 110 SDGRCWMDALELALKSGPSSG 130

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 19/124 (15%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTS--LVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
           + K G L    +G    +WK R FIL      L ++    +  P         LG I L 
Sbjct: 18  IIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP---------LGAIHLR 66

Query: 142 NSGSVVVKADKKLLTVLFPDG-----RDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
                 V+++         +       D   + L+A + ++  +W  A++ A ++   +G
Sbjct: 67  GCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA-SRTGKSG 125

Query: 197 SATG 200
            ++G
Sbjct: 126 PSSG 129

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 55.5 bits (133), Expect = 9e-09
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 14/151 (9%)

Query: 44  SGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAGNAVFKSGPLFISSKGIGWT--S 101
              AG     +                        +    V K+G L    K   +    
Sbjct: 66  DPFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFE 125

Query: 102 WKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP- 160
           W+KRW  L+ T   ++ SD     +         G   ++     +    +K        
Sbjct: 126 WQKRWCALSKTVFYYYGSDKDKQQK---------GEFAIDGYDVRMNNTLRKDGKKDCCF 176

Query: 161 --DGRDGRAFTLKAESLEDLYDWKTALENAL 189
                D R +   A S +D  +W   L+  L
Sbjct: 177 EICAPDKRIYQFTAASPKDAEEWVQQLKFIL 207

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLT--LGGIDLNNSGSVVVKADKKLLTVL 158
           +W   W +LT  SLVF+R  P   P  G     +     +DL  +     +       VL
Sbjct: 33  NWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRRNVL 92

Query: 159 FPDGRDGRAFTLKAESLEDLYDWKTALENALAQAP 193
                 G  F L+++   +L  W  AL   + +  
Sbjct: 93  HIRTIPGHEFLLQSDHETELRAWHRALRTVIERLV 127

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 51.6 bits (123), Expect = 5e-08
 Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 91  FISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKA 150
               + +    +++ W +   T+L +++S   A      ++NL    +  +    V V  
Sbjct: 17  IFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPD----VNVSG 72

Query: 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSA 198
            K  + +L P         L+ +  +    W      A        S+
Sbjct: 73  QKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMADSS 120

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 14/94 (14%)

Query: 101 SWKKRWFILTHTSLVF--FRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVL 158
            WK RWF            R+   A P         L  IDL+++        ++ +  +
Sbjct: 25  GWKSRWFFYDERKCQLYYSRTAQDANP---------LDSIDLSSAVFDCKADAEEGIFEI 75

Query: 159 FPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
               R     TLKA + + +  W   L+    + 
Sbjct: 76  KTPSRV---ITLKAATKQAMLYWLQQLQMKRWEF 106

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 51.5 bits (123), Expect = 5e-08
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS 145
            SG L+   K + W  WKKR+F+L   S   F        +   +  L L G  ++ +  
Sbjct: 10  HSGYLWAIGKNV-WKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDP 68

Query: 146 VVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
                  +         ++G      ++  +D   W  A+  A  Q+
Sbjct: 69  QPGLEGGRAFFNAV---KEGDTVIFASDDEQDRILWVQAMYRATGQS 112

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 53.0 bits (126), Expect = 1e-07
 Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 67  GPPPGPNDHRITRAGNAVFKSGPLFISSK---GIGWTSWKKRWFILTHTSLVFFRSDPSA 123
           GP        + +AG    K+  +   +K         WK  W  L   +L F+ +D  +
Sbjct: 1   GPLGSAAQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRS 60

Query: 124 IPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKT 183
                S        + + NS    V    K   V       G AF  +  S  +L +W T
Sbjct: 61  GIDHNSVPKHA---VWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWIT 117

Query: 184 ALENALAQAPSTGS 197
           A+ +A A A +   
Sbjct: 118 AIHSACAAAVARHH 131

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 23/136 (16%)

Query: 83  AVFKSGPLFISSKG---IGWTSWKKRWFILTHTSLVFFRSDPS----------------- 122
           AV         S+        ++KK  F+LT   L ++  D                   
Sbjct: 2   AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKIT 61

Query: 123 ---AIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLY 179
               +  + +             S  +   +  +     F    D     + + + E   
Sbjct: 62  CVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRK 121

Query: 180 DWKTALENALAQAPST 195
            W   L+N +      
Sbjct: 122 RWIHQLKNVIRYNSDL 137

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 24/126 (19%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS 145
           K   L   S       WKK++  L+    + +    +         +     +DL  +  
Sbjct: 6   KQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIH-----STHGKEMDLLRTTV 60

Query: 146 VVVKADKKLLTVLFPDGR-------------------DGRAFTLKAESLEDLYDWKTALE 186
            V           F                        G+ +  +A S E+   W  A+E
Sbjct: 61  KVPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIE 120

Query: 187 NALAQA 192
           + +  +
Sbjct: 121 SQILAS 126

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 15/132 (11%)

Query: 78  TRAGNAVFKSGPLFI----------SSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK 127
           ++    V K+G LF             + +    WK+ W  L   +L+F+ +      ++
Sbjct: 5   SKEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQ 64

Query: 128 GSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP-DGRDGRAFTLKAESLEDLYDWKTALE 186
            S        +   +S  V    +      +F      G  +  +A S  DL +W TA+ 
Sbjct: 65  NSAPR---CALFAEDS-IVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIH 120

Query: 187 NALAQAPSTGSA 198
           +A A   +    
Sbjct: 121 SACASLFAKKHG 132

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 31/138 (22%)

Query: 68  PPPGPNDHRITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTS-------LVFFRSD 120
           PP       + + G  + K              S  KR+F+L   S       L ++ ++
Sbjct: 1   PPESDGFSDVRKVGY-LRKP------------KSMHKRFFVLRAASEAGGPARLEYYENE 47

Query: 121 PSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKK---LLTVLFPDGRDGRAFTLKAESLED 177
                +  +        I L +  ++  +AD K   L+ +   D      F + A+S  +
Sbjct: 48  KKWRHKSSAP----KRSIPLESCFNINKRADSKNKHLVALYTRD----EHFAIAADSEAE 99

Query: 178 LYDWKTALENALAQAPST 195
              W  AL     +A   
Sbjct: 100 QDSWYQALLQLHNRAKGH 117

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSA--------IPQKGSEVNLTLGG 137
           KSG L   SK +   S+ K +++LT   L  F++            +      V      
Sbjct: 8   KSGFLERRSKFL--KSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRK 65

Query: 138 IDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
              ++  S    A   L        R G  +  KA+S E +  W   L+  
Sbjct: 66  NSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKIL 116

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 49.6 bits (117), Expect = 2e-06
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 75  HRITRAGNAVFKSGPLFISSK-GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNL 133
            +     N   K+G L   +K G+  ++W ++++     +L+       A          
Sbjct: 269 TKFPVNRNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVAGG-------- 320

Query: 134 TLGGIDLNNSGSVVVKADKKLLT--VLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191
               +D++N   + V  + +     +   DG+  ++  L+AES +D  +W   + N   Q
Sbjct: 321 --LAMDIDNCSVMAVDCEDRRYCFQITSFDGK--KSSILQAESKKDHEEWICTINNISKQ 376

Query: 192 A 192
            
Sbjct: 377 I 377

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 23/131 (17%)

Query: 67  GPPPGPNDHRITRAGNAVFKSGPLF------ISSKGIGWTSWKKRWFILTHTSLVFFRSD 120
           G   G                G +        ++K     SW K +       + F++ D
Sbjct: 1   GSGTGAG----------EGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYK-D 49

Query: 121 PSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKK---LLTVLFPDGRDGRAFTLKAESLED 177
                             DL N+   +     K   +L V   +G     F L+A    +
Sbjct: 50  QKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGAL---FLLQAHDDTE 106

Query: 178 LYDWKTALENA 188
           +  W T+L+  
Sbjct: 107 MSQWVTSLKAQ 117

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 16/114 (14%)

Query: 87  SGPLFISSKGIGWTSWKKRWFILTHTS---LVFFRSDPSAIPQKGSEVNLTLGGIDLNN- 142
            GPL +S  G    +W + W  +  +    L                       I L + 
Sbjct: 11  CGPLRLSESG---ETWSEVWAAIPMSDPQVLHLQGGSQDGRL---------PRTIPLPSC 58

Query: 143 SGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
             SV    ++     ++      +++ L A S E    W   L  A    PS+G
Sbjct: 59  KLSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAAHSGPSSG 112

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 45.9 bits (108), Expect = 7e-06
 Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 20/137 (14%)

Query: 84  VFKSGPLFISS--------KGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTL 135
             K G L             G     WK+ + +L   SL  ++           E     
Sbjct: 3   AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEE----- 57

Query: 136 GGIDLNNSGSVVVKADKK---LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
             I +N     +  ++ K   +  +   D         +AE  +D+  W   ++ +    
Sbjct: 58  QPISVNACLIDISYSETKRKNVFRLTTSDCE----CLFQAEDRDDMLAWIKTIQESSNLN 113

Query: 193 PSTGSATGQNGILKNDK 209
                 T ++ I +  K
Sbjct: 114 EEDTGVTNRDLISRRIK 130

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 30/143 (20%)

Query: 651  QRLEDTKSDLQRKIADEVKGNEILEASL------------------------ESRKKALH 686
              LE+    LQRKI ++ K  + L   +                        E   K   
Sbjct: 924  IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983

Query: 687  ERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAET 746
             R L+L+ ++A+L+ +L + + ++  +E    ++          ++       +    +T
Sbjct: 984  NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK------HETEQLVSELKEQNTLLKT 1037

Query: 747  DIINLKQKAKDLRVQLSEQLEKN 769
            +   L ++  D   +++E +EK 
Sbjct: 1038 EKEELNRRIHDQAKEITETMEKK 1060

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 17/101 (16%)

Query: 95  KGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKK- 153
           K     SW   + ++ +  + F++   SA     S +                V  D K 
Sbjct: 16  KKASSRSWHNVYCVINNQEMGFYKDAKSA----ASGIPYHSEVPVSLKEAICEVALDYKK 71

Query: 154 ------LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
                 L         DG  +  +A+  E++  W  A+ +A
Sbjct: 72  KKHVFKLRL------SDGNEYLFQAKDDEEMNTWIQAISSA 106

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Length = 124

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS 145
           + G L++         W + +  +    L F       + +     +L  G +DLN    
Sbjct: 14  QQGELYMWDSIDQ--KWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNV 71

Query: 146 VVVKADKKLLTVLF---PDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
           V     K   + +F   P  +         + +E+L++W  ++     + 
Sbjct: 72  VKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI 121

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 5/117 (4%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLV-FFRSDPSAIPQKGSEVNLTLGGIDLNN 142
             K G L++  +      W++    L   S     R +    P+K          I L++
Sbjct: 12  AVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSD 71

Query: 143 SGSVV---VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
              V     +A     T  F      R + L A + E   DW  A+       PS+G
Sbjct: 72  CLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAAE-RGDWVQAICLLAFSGPSSG 127

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 6/164 (3%)

Query: 26  VIGIWSVKAPNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAGNAVF 85
           V    + ++    R+     +    PM   P       Q               + ++  
Sbjct: 74  VESTMASESKFLFRKNYAKYEFFKNPMNFFPEQMVTWSQQSNGSQTQLLQNFLNSSSSPE 133

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK-GSEVNLTLGGIDLNNSG 144
             G L +  K +G  SWKK +  L  + L       SA P+      +L    I    +G
Sbjct: 134 IQGFLHV--KELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAG 191

Query: 145 SVVVKADKKLLTVLFPDGRDGRAFTLK---AESLEDLYDWKTAL 185
                A       + P+        L+   AE  +    W TA 
Sbjct: 192 RKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAF 235

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 13/134 (9%)

Query: 647  EVEIQRLEDTKSDLQRKIADEVKGNEILEA----------SLESRKKALHERRLALENDV 696
            E  I  LE      ++   +  K    LE            L+++   L  +    E ++
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097

Query: 697  ARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAK 756
                 +L+ E  ++      + E          + E  + E     +AE    +L ++ +
Sbjct: 1098 QAALARLEDETSQKNNALKKIRELESHI---SDLQEDLESEKAARNKAEKQKRDLSEELE 1154

Query: 757  DLRVQLSEQLEKND 770
             L+ +L + L+   
Sbjct: 1155 ALKTELEDTLDTTA 1168

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 91  FISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKA 150
               K +    +K+ W     TS+  ++S   +      ++NL    +    +  V +  
Sbjct: 55  VFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEV----TPDVNISG 110

Query: 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
            K  + +L P         L+ ++ +    W  A   A
Sbjct: 111 QKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLA 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	804
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	3e-30
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	6e-28
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	8e-28
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	3e-26
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	1e-14
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	2e-14
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	8e-13
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	1e-12
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	2e-12
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	3e-12
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	2e-11
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	2e-11
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	4e-11
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	4e-11
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	4e-11
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	1e-10
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	2e-10
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	2e-10
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	2e-10
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	4e-10
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	7e-10
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	1e-09
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	1e-09
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	2e-09
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	2e-09
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	3e-09
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	8e-09
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	1e-08
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	3e-08
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	5e-08
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	1e-07
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	1e-07
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	7e-07
d1x1fa1	136	b.55.1.1 (A:8-143) Signal-transducing adaptor prot	1e-06
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	1e-06
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	2e-06
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	2e-06
d1w1ha_	147	b.55.1.1 (A:) 3-phosphoinositide dependent protein	3e-05
d1v61a_	132	b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (M	3e-04
d2coaa1	112	b.55.1.1 (A:8-119) Protein kinase c, d2 type {Huma	7e-04

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 3e-30
 Identities = 43/216 (19%), Positives = 83/216 (38%), Gaps = 24/216 (11%)

Query: 224 PVKFPVIGRPILLALE---DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIR 280
           P+     G  +    E   + +  P  L + + +++ H +  EGI R++A    V    +
Sbjct: 1   PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQ 60

Query: 281 EFEQGK-TEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRT 339
           ++  G   +F      H+ A  +K  +RELP   +       ++     D   RV A   
Sbjct: 61  KYNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL- 119

Query: 340 AILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETD 399
            +L+T PE N ++L+ +   +  +++  +QN+M+ + +A    P LL             
Sbjct: 120 QVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWA----------- 168

Query: 400 FNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435
                           A N        LL+   ++F
Sbjct: 169 --------KDAAITLKAINPINTFTKFLLDHQGELF 196

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  109 bits (273), Expect = 6e-28
 Identities = 39/199 (19%), Positives = 76/199 (38%), Gaps = 24/199 (12%)

Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT------EFSPEEDAHII 298
            S ++K I  +E  G+  +G+ R       V + +      KT      E   E +   I
Sbjct: 8   FSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTI 67

Query: 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILM 358
              +K  +R LP   +      + ++A + +      +   +++   PE NR++L  ++ 
Sbjct: 68  TSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMN 127

Query: 359 MMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAAN 418
            +  VA +  QN M+ + +     P LLRP                    + + A     
Sbjct: 128 HLAKVADNHKQNLMTVANLGVVFGPTLLRP------------------QEETVAAIMDIK 169

Query: 419 HAQAIVITLLEEYDKIFGE 437
               ++  L+E ++KIF  
Sbjct: 170 FQNIVIEILIENHEKIFNT 188

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 8e-28
 Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 24/213 (11%)

Query: 229 VIGRPILLALEDVDGT--PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK 286
           V     L  L     T  P  ++  IR IE  G++ EG+ R + + + +      F++  
Sbjct: 2   VYCCD-LTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDG 60

Query: 287 TEFSPEE----DAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAIL 342
            +         D +II   +K   R+LP   +     +  ++A +             +L
Sbjct: 61  EKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVL 120

Query: 343 ETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNV 402
              P  + + L+ +++ ++ V  ++  N M+   +     P L+RP              
Sbjct: 121 MLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRP-------------- 166

Query: 403 GGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435
                   L       + + IV  L+E  D +F
Sbjct: 167 ---PEDSTLTTLHDMRYQKLIVQILIENEDVLF 196

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-26
 Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 5/151 (3%)

Query: 242 DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEE-DAHIIAD 300
           D  P  L K +  IE+ G++   + R  +   ++    +  +        E  D H++AD
Sbjct: 12  DIAPPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLDCDTPSVDLEMIDVHVLAD 70

Query: 301 CVKYVIRELPSSPVPASCCNALLEARR--TDRGSRVSAMRTAI-LETFPEPNRKLLQRIL 357
             K  + +LP+  +PA+  + ++            +  ++  I   + P      LQ +L
Sbjct: 71  AFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLL 130

Query: 358 MMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
                ++ + ++N ++   ++   +P+L R 
Sbjct: 131 KHFFKLSQTSSKNLLNARVLSEIFSPMLFRF 161

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 1e-14
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 82  NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
           +AV K+G      +G    +WK+R+F L   ++ +F+S+    P            I L 
Sbjct: 1   SAVIKAGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKEPL---------RVIPLK 49

Query: 142 N--SGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191
                    ++D  +   LF      R F ++A+S E+++ W  A+  A+  
Sbjct: 50  EVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVA 101

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.1 bits (168), Expect = 2e-14
 Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 1/120 (0%)

Query: 77  ITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLG 136
           I R G   F       S  G G   W+K   +L              +P K S   +++ 
Sbjct: 18  IQREGALRFMVADDAASGPG-GTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIP 76

Query: 137 GIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
              +    + +     +          +G  + L+       + W   ++  +   PS+G
Sbjct: 77  LSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDSGPSSG 136

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 8e-13
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 84  VFKSGPLFISSKGIGW--TSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
           V K G L   SK   +  + W+KRW +++     ++ ++ S  P+    +         +
Sbjct: 1   VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIK------GYS 54

Query: 142 NSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189
              +  ++ D K  +      +D R +   A S  +  DW   +   L
Sbjct: 55  VRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL 102

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 80  AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
             +   K G L    +     +W++R+F+L    L +++ +    PQ      + L G  
Sbjct: 4   GSSGPIKMGWLKK--QRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQG----CMYLPGCT 57

Query: 140 LNNSGSVVVKADKKLLTVLFPDGR----DGRAFTLKAESLEDLYDWKTALENALAQAPST 195
           +    +   +A K +  ++            ++ L A S  ++ +W   L       PS+
Sbjct: 58  IKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPSS 117

Query: 196 G 196
           G
Sbjct: 118 G 118

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 14/110 (12%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           + K G L    +G    +WK R FIL          DP+            LG I L   
Sbjct: 2   IIKQGCLLK--QGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP-------LGAIHLRGC 52

Query: 144 GSVVVKADKKLLT-----VLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
               V+++          +      D   + L+A + ++  +W  A++ A
Sbjct: 53  VVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 102

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 3e-12
 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 12/113 (10%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
             + G L    KG  + +WK  W +L    + F++      P+         G I L  S
Sbjct: 5   RIREGYLVK--KGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPK---------GMIPLKGS 53

Query: 144 GSVVV-KADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPST 195
                 +   K + V        +    +A  LE+   W   +  A+      
Sbjct: 54  TLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIEGL 106

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.9 bits (144), Expect = 2e-11
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 1/105 (0%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           V +      ++K     SW K +       + F++                    DL N+
Sbjct: 14  VTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKS-NPELTFRGEPSYDLQNA 72

Query: 144 GSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
              +     K   VL     +G  F L+A    ++  W T+L+  
Sbjct: 73  AIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQ 117

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 3/117 (2%)

Query: 80  AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
             +     G L+   KG     WK RWF+L  T       D     +    ++L      
Sbjct: 4   GSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLA-EVEA 60

Query: 140 LNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
           +      +           F      R +   A+ +     W   +++ L+  PS+G
Sbjct: 61  VAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSGPSSG 117

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (142), Expect = 4e-11
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 31/128 (24%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS 145
           + G L     G    +WK+RWFILT   L +F       P+         G I L N   
Sbjct: 7   REGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPR---------GIIPLENLSI 55

Query: 146 VVVKADKK--LLTVLFPDGR------------------DGRAFTLKAESLEDLYDWKTAL 185
             V   +K     +  P  +                  +   + + A S E+  +W  ++
Sbjct: 56  REVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 115

Query: 186 ENALAQAP 193
           + ++++ P
Sbjct: 116 KASISRDP 123

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 4e-11
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 3/105 (2%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           + +       +K     SW   + ++ +  + F++   SA              + L  +
Sbjct: 5   LNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHS---EVPVSLKEA 61

Query: 144 GSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
              V    KK   V      DG  +  +A+  E++  W  A+ +A
Sbjct: 62  ICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 4e-11
 Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 12/106 (11%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS 145
           K G L    +G    +WK RWF L    L +F+   S  P            I      S
Sbjct: 6   KEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPI----------RILDLTECS 53

Query: 146 VVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191
            V     +     F      R F L A++  +  +W   L   L+Q
Sbjct: 54  AVQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ 99

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-10
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 83  AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNN 142
            V + G L I++ GI     K+ WF+LT  +L +++ D     +        L   D+  
Sbjct: 2   LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKK-YMLSVDNLKLRDVEK 60

Query: 143 SGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
                        T      +D R   L  E+ E++  WK +   A
Sbjct: 61  GFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 106

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 16/113 (14%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           V K G L    +G    +WK R F+L          DPS    +       +GG  L  S
Sbjct: 11  VVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENR------PVGGFSLRGS 62

Query: 144 GSVVVKADKKLLTVLFPDGR--------DGRAFTLKAESLEDLYDWKTALENA 188
               ++ +     V              D   + ++A S  +  +W  A++  
Sbjct: 63  LVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL 115

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.5 bits (135), Expect = 2e-10
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 14/111 (12%)

Query: 84  VFKSGPLFISSKG--IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
           V K+G L    K        W+KRW  L+ T   ++ SD     +         G   ++
Sbjct: 9   VIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK---------GEFAID 59

Query: 142 NSGSVVVKAD---KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189
                +        K          D R +   A S +D  +W   L+  L
Sbjct: 60  GYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 110

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160
           SW+  + +L   SL F++   +A              + L  +   V    +K   V   
Sbjct: 31  SWQNVYCVLRRGSLGFYKDAKAASAGVPYHGE---VPVSLARAQGSVAFDYRKRKHVFKL 87

Query: 161 DGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
             +DG+ +  +A+   ++  W   +  A+A  PS+G
Sbjct: 88  GLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPSSG 123

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 4e-10
 Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 16/130 (12%)

Query: 80  AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSA-----IPQKGSEV--- 131
             + +  +  L          SW K W +L    L+ +++  +      +     E+   
Sbjct: 4   GSSGIVMADWLK---IRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIER 60

Query: 132 -----NLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALE 186
                                VK  K                 ++A S  D   W  ALE
Sbjct: 61  PSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALE 120

Query: 187 NALAQAPSTG 196
            AL   PS+G
Sbjct: 121 LALKSGPSSG 130

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 7e-10
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 82  NAVFKSGPLFI-SSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDL 140
           N   K+G L   +  G+  ++W ++++     +L+       A              +D+
Sbjct: 3   NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVA----------GGLAMDI 52

Query: 141 NNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
           +N   + V  + +            ++  L+AES +D  +W   + N 
Sbjct: 53  DNCSVMAVDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI 100

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 1/111 (0%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS 145
             G L I         + +R+FIL   +        +          +    +   +  S
Sbjct: 17  ICGFLDIEDNE-NSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVS 75

Query: 146 VVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
           +     K      F      + + L+A   +DL DW  AL  A    PS+G
Sbjct: 76  IATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKSGPSSG 126

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 80  AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
             + +  SG L+   K + W  WKKR+F+L   S   F        +   +  L L G  
Sbjct: 4   GSSGMKHSGYLWAIGKNV-WKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYT 62

Query: 140 LNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
           ++ +         +          +G      ++  +D   W  A+  A  Q+
Sbjct: 63  VDYTDPQPGLEGGRAFFNAVK---EGDTVIFASDDEQDRILWVQAMYRATGQS 112

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 12/110 (10%)

Query: 81  GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDL 140
              V   G L       G   WK+RWF+L+   L +++                 G + L
Sbjct: 6   NLPVHIRGWLHKQDSS-GLRLWKRRWFVLSGHCLFYYKDSREESVL---------GSVLL 55

Query: 141 NNSGSVVVKADK--KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
            +                    +    R + L A++LEDL  W  AL  A
Sbjct: 56  PSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 105

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 11/117 (9%)

Query: 80  AGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID 139
             +    SG L+          WK  WF++ +  L  + +       +            
Sbjct: 4   GSSGSTMSGYLYR--SKGSKKPWKHLWFVIKNKVLYTYAASEDVAALES---------QP 52

Query: 140 LNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
           L      +VK +     V     +    +  KA+       W  A +      PS+G
Sbjct: 53  LLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPSSG 109

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 3e-09
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 8/136 (5%)

Query: 77  ITRAGNAVFKSGPLF----ISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVN 132
           +      + K G L+     S+  +   S+K+R+F L            +    K  +++
Sbjct: 11  LGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGD----GSYNLNFYKDEKIS 66

Query: 133 LTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
               G    +S   VV+ +K          +D  ++ L A+S  ++ +W T L   L   
Sbjct: 67  KEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLN 126

Query: 193 PSTGSATGQNGILKND 208
                   +NG    D
Sbjct: 127 FEAAMQEKRNGDSHED 142

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 8e-09
 Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 4/111 (3%)

Query: 82  NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
            A+ K G L    +G    +W+ R+F+L +        +      +              
Sbjct: 5   VAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREA--PLNNFSVAQ 60

Query: 142 NSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
                  +       +           T   E+ E+  +W TA++      
Sbjct: 61  CQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL 111

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS 145
           KSG L   S   G   ++KRW      S+ ++ ++     +           I L+   S
Sbjct: 3   KSGWLDKLSPQ-GKRMFQKRWVKFDGLSISYYNNEKEMYSKG---------IIPLSAI-S 51

Query: 146 VVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPST 195
            V         V+         F  + E  E+  DW + L NAL     T
Sbjct: 52  TVRVQGDNKFEVVTTQRT----FVFRVEKEEERNDWISILLNALKSQSLT 97

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 29/141 (20%), Positives = 44/141 (31%), Gaps = 20/141 (14%)

Query: 54  TNPPGGPPSGQPPGPPPGPNDHRITRAGNAVFKSGPLFISSKGIGW--TSWKKRWFILTH 111
            +     PS     PP    D         V K+G L    K   +    W+KRW  L+ 
Sbjct: 80  YDKDDDGPSDGNQFPPIAAQD------LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSK 133

Query: 112 TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKA---DKKLLTVLFPDGRDGRAF 168
           T   ++ SD     +         G   ++     +      D K          D R +
Sbjct: 134 TVFYYYGSDKDKQQK---------GEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIY 184

Query: 169 TLKAESLEDLYDWKTALENAL 189
              A S +D  +W   L+  L
Sbjct: 185 QFTAASPKDAEEWVQQLKFIL 205

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 5e-08
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFR---SDPSAIPQKGSEVNLTLGGIDL 140
           V K G L          S  KR+F+L   S               +   + +     I L
Sbjct: 2   VRKVGYLRKPK------SMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPL 55

Query: 141 NNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTAL 185
            +  ++  +AD K   ++    RD   F + A+S  +   W  AL
Sbjct: 56  ESCFNINKRADSKNKHLVALYTRD-EHFAIAADSEAEQDSWYQAL 99

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS 145
           K+G L++  +      W   +F+LT + + +              +   L       +  
Sbjct: 3   KNGILYL--EDPVNHEWYPHYFVLTSSKIYYSEE------TSSDLLRGVLDVPACQIAIR 54

Query: 146 VVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
              K ++  +  +        +  + A+S E+L DW   +      A
Sbjct: 55  PEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQTA 101

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 14/105 (13%)

Query: 87  SGPLFISSKGIGWTSWKKRWFILTH---TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
            GPL +S  G    +W + W  +       L            +             +  
Sbjct: 4   CGPLRLSESG---ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTI--------PLPSCK 52

Query: 144 GSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
            SV    ++     ++      +++ L A S E    W   L  A
Sbjct: 53  LSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTA 97

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 86  KSGPLFISS--------KGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG 137
           K G L             G     WK+ + +L   SL  ++       ++ +  +     
Sbjct: 3   KEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYK-----DKREQTTPSEEEQP 57

Query: 138 IDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGS 197
           I +N     +  ++ K   V F           +AE  +D+  W   ++ +         
Sbjct: 58  ISVNACLIDISYSETKRKNV-FRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTG 116

Query: 198 ATGQNGILK 206
            T ++ I +
Sbjct: 117 VTNRDLISR 125

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 12/129 (9%)

Query: 84  VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
           ++  G L I  K  G+  ++  W  L  T+L F+    S I             +D+ + 
Sbjct: 11  LYFEGFLLI--KRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDK---------LDIVDL 59

Query: 144 GSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA-QAPSTGSATGQN 202
             +  +   +     F          LK E+ E   +W+  +        P   S     
Sbjct: 60  TCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELSVPQNVSLLPGQ 119

Query: 203 GILKNDKAE 211
            I  ++  E
Sbjct: 120 VIKLHEVLE 128

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 13/112 (11%)

Query: 81  GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDL 140
           G      G +         T W++R+F L    L +     +                  
Sbjct: 7   GKDCIMHGYMSKMG-NPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTM----------- 54

Query: 141 NNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
                 V +   K    L    R G+ F L+ +S  +L  WK  L +A  +A
Sbjct: 55  -EEIQSVEETQIKERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAYREA 105

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 15/98 (15%)

Query: 100 TSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159
           + WK RW  +    L F++             +             VV       L    
Sbjct: 13  SQWKSRWCSVRDNHLHFYQD---------RNRSKVAQQPLSLVGCEVVPDPSPDHLYSFR 63

Query: 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGS 197
              +      L+A+S E++  W   L +       +GS
Sbjct: 64  ILHKGEELAKLEAKSSEEMGHWLGLLLSE------SGS 95

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 23/135 (17%)

Query: 83  AVFKSGPLFISSKG---IGWTSWKKRWFILTHTSLVFFRSDP----------SAIPQKGS 129
           AV         S+        ++KK  F+LT   L ++  D           S   +K +
Sbjct: 2   AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKIT 61

Query: 130 EVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR----------DGRAFTLKAESLEDLY 179
            V   +   +      +  + ++                     D     + + + E   
Sbjct: 62  CVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRK 121

Query: 180 DWKTALENALAQAPS 194
            W   L+N +     
Sbjct: 122 RWIHQLKNVIRYNSD 136

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 19/112 (16%)

Query: 81  GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDL 140
            N + K GP+            ++R  +LT    +++    + + +         G I  
Sbjct: 45  NNLILKMGPV----DKRKGLFARRRQLLLTEGPHLYYVDPVNKVLK---------GEIPW 91

Query: 141 NNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192
           +       K + K   V  P+    R + L   S  + + W   ++    Q 
Sbjct: 92  SQELRPEAK-NFKTFFVHTPN----RTYYLMDPS-GNAHKWCRKIQEVWRQR 137

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Length = 132

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 9/120 (7%)

Query: 77  ITRAGNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLG 136
           I   GN +F S  +            ++R+F+L  + L+   + P           +  G
Sbjct: 22  IKTLGNVIFMSQVVMQHGACE---EKEERYFLLFSSVLIMLSASP------RMSGFMYQG 72

Query: 137 GIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
            I +       +   +    +    G       +   + +D  +W   L       PS+G
Sbjct: 73  KIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKSGPSSG 132

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 13/113 (11%)

Query: 86  KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK---------GSEVNLTLG 136
           + G  ++       T  K+ ++ L    +  F+++ +    K                  
Sbjct: 3   REG--WVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSL 60

Query: 137 GIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189
                N     +        V    G          +  E    W+TA+  AL
Sbjct: 61  VPPGTNPHCFEIVTANATYFVGEMPGGT--PGGPSGQGAEAARGWETAIRQAL 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	804
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	100.0
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	100.0
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	100.0
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	100.0
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.63
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.62
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.62
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.61
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.6
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.59
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.59
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.58
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.57
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.56
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.56
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.56
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.55
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.55
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.54
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.53
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.51
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.48
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.48
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.48
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.47
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.46
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.46
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.44
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.43
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.42
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.42
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.4
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.39
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	98.81
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	98.56
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	97.95
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	97.94
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	97.88
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	97.76
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	97.67
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	97.47
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	97.41
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	97.15
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	95.89
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	87.14

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-40  Score=288.37  Aligned_cols=190  Identities=19%  Similarity=0.354  Sum_probs=167.0

Q ss_pred             CCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCC--C--CCCCCCHHHHHHHH
Q ss_conf             8124665676420-89985899999999997099558904308998899999999742998--9--99998813337789
Q 003668          228 PVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT--E--FSPEEDAHIIADCV  302 (804)
Q Consensus       228 ~vFGvpLe~ll~~-~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~~--~--~~~~~Dv~~vAslL  302 (804)
                      ++||+||+.++++ +..+|.+|.+|+.+|+++|+++|||||++|+.++++++++.+|.+..  .  ....+|+|++|++|
T Consensus         1 kiFg~~L~~~~~~~~~~iP~iv~~~i~~l~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~va~~l   80 (196)
T d1xa6a1           1 KVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGAL   80 (196)
T ss_dssp             CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             96387789999766999993999999999981999888056179799999999997448976544433233015999999


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             9987109999989455999999980493-579999999999209956898999999989999852034799810023643
Q 003668          303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM  381 (804)
Q Consensus       303 K~fLReLPePLlp~~ly~~li~~~~~~~-~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAvvF  381 (804)
                      |.|||+||+||+|.++|+.|+.+.+..+ +.++..++.++. +||+.|+.+|.+|+.||+.|+.|++.|+||+.|||+||
T Consensus        81 K~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA~~f  159 (196)
T d1xa6a1          81 KLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLM-LLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVF  159 (196)
T ss_dssp             HHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHHT-TSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99997499865778899999999730005689999999999-89999999999999999999886661246643536874


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             022158887796544344566899828999999998899999999996223225
Q 003668          382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF  435 (804)
Q Consensus       382 aPsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF  435 (804)
                      ||+|+|++......                 +.......+.+|++||+||+.||
T Consensus       160 ~P~l~~~~~~~~~~-----------------~~~~~~~~~~iv~~LI~~~~~iF  196 (196)
T d1xa6a1         160 GPTLMRPPEDSTLT-----------------TLHDMRYQKLIVQILIENEDVLF  196 (196)
T ss_dssp             TTTSCCCCCSCTTG-----------------GGGTHHHHHHHHHHHHHTHHHHC
T ss_pred             CCCCCCCCCCCHHH-----------------HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             25304688733778-----------------99999999999999997058509

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-39  Score=282.87  Aligned_cols=192  Identities=22%  Similarity=0.360  Sum_probs=170.3

Q ss_pred             CCCCCCCCCCHHHHHHC---CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCC-CCCCCCCHHHHH
Q ss_conf             89998124665676420---89985899999999997099558904308998899999999742998-999998813337
Q 003668          224 PVKFPVIGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIA  299 (804)
Q Consensus       224 ~~k~~vFGvpLe~ll~~---~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~~-~~~~~~Dv~~vA  299 (804)
                      |.++.+||+||+.+++.   ...||.+|.+|+.+|+.+|+.++||||++|+.+.++++++.++.|.. .+....++|+||
T Consensus         1 p~~~~~FG~~L~~l~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~va   80 (196)
T d1tx4a_           1 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA   80 (196)
T ss_dssp             CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf             97988849788999961799999786999999999981999788244478699999999997279986645333188899


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             78999871099999894559999999804935799999999992099568989999999899998520347998100236
Q 003668          300 DCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA  379 (804)
Q Consensus       300 slLK~fLReLPePLlp~~ly~~li~~~~~~~~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAv  379 (804)
                      ++||.|||+||+||+|..+|+.|+.+....+++++..++.++ .+||+.|+.+|.+|+.||+.|+.|++.|+|++.|||+
T Consensus        81 ~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~nLa~  159 (196)
T d1tx4a_          81 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV  159 (196)
T ss_dssp             HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             999999970899844299999999998147289999999999-9879999999999999999999989877667988999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             43022158887796544344566899828999999998899999999996223225
Q 003668          380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF  435 (804)
Q Consensus       380 vFaPsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF  435 (804)
                      ||||+|+|++.       .            ..........+.++++||+||+.||
T Consensus       160 ~f~P~l~~~~~-------~------------~~~~~~~~~~~~~~~~LI~~~~~iF  196 (196)
T d1tx4a_         160 VFGPNLLWAKD-------A------------AITLKAINPINTFTKFLLDHQGELF  196 (196)
T ss_dssp             HHHHHHCCCSS-------H------------HHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHHHHCCCCC-------C------------CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             97035267898-------1------------0349999999999999997589629

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.8e-36  Score=262.71  Aligned_cols=178  Identities=24%  Similarity=0.375  Sum_probs=157.5

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCC------CCCCCCCHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             985899999999997099558904308998899999999742998------99999881333778999871099999894
Q 003668          243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT------EFSPEEDAHIIADCVKYVIRELPSSPVPA  316 (804)
Q Consensus       243 ~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~~------~~~~~~Dv~~vAslLK~fLReLPePLlp~  316 (804)
                      .+|.+|.+|+.+|+++|+.+|||||++|+..+++++++.++.+..      .....+|+|++|++||.|||+||+||+|+
T Consensus         6 ~~~~iv~~ci~~l~~~gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~lreLp~pLi~~   85 (191)
T d1f7ca_           6 IGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMY   85 (191)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             25089999999999809998881158897999999999985767544221000344679999999999998078986479


Q ss_pred             HHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             55999999980493-57999999999920995689899999998999985203479981002364302215888779654
Q 003668          317 SCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECE  395 (804)
Q Consensus       317 ~ly~~li~~~~~~~-~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAvvFaPsLLrp~~~~~~~  395 (804)
                      ++|+.|+.+.+..+ +.++..++.++. +||+.|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+|+|++......
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ll~-~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~~~~~  164 (191)
T d1f7ca_          86 QFQRSFIKAAKLENQESRVSEIHSLVH-RLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAA  164 (191)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSG
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHCCCCCCCHHH
T ss_conf             999999999801578999999999999-7998999999999999999998411345718889999604524788752578


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             43445668998289999999988999999999962232258888
Q 003668          396 IETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGS  439 (804)
Q Consensus       396 ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF~e~~  439 (804)
                      +                  ......+.+|++||+||+.||++.+
T Consensus       165 ~------------------~~~~~~~~iv~~LI~~~~~iF~~~p  190 (191)
T d1f7ca_         165 I------------------MDIKFQNIVIEILIENHEKIFNTVP  190 (191)
T ss_dssp             G------------------GGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred             H------------------HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9------------------9899999999999998999779999

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-35  Score=254.41  Aligned_cols=170  Identities=16%  Similarity=0.291  Sum_probs=146.7

Q ss_pred             HCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             20899858999999999970995589043089988999999997429989-99998813337789998710999998945
Q 003668          239 EDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIRELPSSPVPAS  317 (804)
Q Consensus       239 ~~~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~~~-~~~~~Dv~~vAslLK~fLReLPePLlp~~  317 (804)
                      ...+.||.+|.+|+.+|+++|+.+|||||++|+ ++++++++.++.|... .....|+|++|++||.|||+||+||+|++
T Consensus         9 ~~~~~vP~~l~~~i~~ie~~gl~~eGIFR~~g~-~~i~~l~~~~~~~~~~~~~~~~~~~~va~lLK~flreLp~plip~~   87 (184)
T d1pbwa_           9 APPDIAPPLLIKLVEAIEKKGLECSTLYRTQSS-SNLAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAA   87 (184)
T ss_dssp             CTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCS-CCTTHHHHHSCSSSSCCCGGGBCHHHHHHHHHHHHHTSSSCSSCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             899998879999999999828997882127864-7999999999669986674337888899999999973897646488


Q ss_pred             HHHHHHHHHHC-CC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf             59999999804-93-5799999999992-099568989999999899998520347998100236430221588877965
Q 003668          318 CCNALLEARRT-DR-GSRVSAMRTAILE-TFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGEC  394 (804)
Q Consensus       318 ly~~li~~~~~-~~-~eri~~i~~lI~~-~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAvvFaPsLLrp~~~~~~  394 (804)
                      +|+.|+.++.. .+ ++++..++.++.. .||..|+.+|+||+.||++|+.|++.|+|++.|||+||||+|||++..   
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LP~~n~~~L~~L~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~---  164 (184)
T d1pbwa_          88 VYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAA---  164 (184)
T ss_dssp             HHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSC---
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCC---
T ss_conf             99999998730599999999999999750565799999999999999998726611664768899960252689877---


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             443445668998289999999988999999999962
Q 003668          395 EIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE  430 (804)
Q Consensus       395 ~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen  430 (804)
                         +               .........+|++||+|
T Consensus       165 ---~---------------~~~~~~~~~vve~LI~n  182 (184)
T d1pbwa_         165 ---S---------------SDNTENLIKVIEILIST  182 (184)
T ss_dssp             ---C---------------HHHHHHHHHHHHHHHHT
T ss_pred             ---C---------------HHHHHHHHHHHHHHHHC
T ss_conf             ---7---------------54699999999999847

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.7e-15  Score=120.08  Aligned_cols=105  Identities=23%  Similarity=0.350  Sum_probs=80.1

Q ss_pred             CCCEEEEEEEEEECCC--CCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEE
Q ss_conf             9836888654864079--98778721899995881688438999989888510121187463488661450589707999
Q 003668           81 GNAVFKSGPLFISSKG--IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVL  158 (804)
Q Consensus        81 ~~~v~KEGyL~l~kKg--~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI  158 (804)
                      ...++|+|||++++++  .+.++|++|||||+++.|+||++..+..+    ...+.|..|.+...........+++||.|
T Consensus       101 ~~~~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~yy~~~~~~~~----~~~i~L~~~~~~~~~~~~~~~~~~~~F~i  176 (209)
T d1u5ea1         101 LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ----KGEFAIDGYDVRMNNTLRKDGKKDCCFEI  176 (209)
T ss_dssp             CSSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSC----SEEEECTTCEEEECGGGCSSTTGGGEEEE
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCC----CEEEEECCEEEEECCCCCCCCCCCCEEEE
T ss_conf             57703899999866899876566238999999999999806887754----32897100056521432223678847999


Q ss_pred             EECCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             834889927999935521288899999977404
Q 003668          159 FPDGRDGRAFTLKAESLEDLYDWKTALENALAQ  191 (804)
Q Consensus       159 ~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~~  191 (804)
                      ...  ++|+|+|+|+|++++..||.||+.++..
T Consensus       177 ~~~--~~r~~~f~a~s~~e~~~Wi~al~~~i~~  207 (209)
T d1u5ea1         177 CAP--DKRIYQFTAASPKDAEEWVQQLKFILQD  207 (209)
T ss_dssp             ECS--SSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             ECC--CCCEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             848--9988999839999999999999999996

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.4e-15  Score=119.10  Aligned_cols=100  Identities=17%  Similarity=0.294  Sum_probs=76.1

Q ss_pred             EEEEEEEEE--------CCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEE
Q ss_conf             888654864--------079987787218999958816884389999898885101211874634886614505897079
Q 003668           85 FKSGPLFIS--------SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLT  156 (804)
Q Consensus        85 ~KEGyL~l~--------kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~F  156 (804)
                      .|||||++.        +.+.+.++|++|||||+++.|+||++..+......+...+.|..|.+...   .....+++||
T Consensus         2 ~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v~~~---~~~~~r~~~F   78 (133)
T d2j59m1           2 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDIS---YSETKRKNVF   78 (133)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEEC---SSSCSCSSEE
T ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCEECCEEEEEC---CCCCCCCCEE
T ss_conf             7038887421455455224887788449999993898998801243124666655311123499972---4345667416


Q ss_pred             EEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             9983488992799993552128889999997740
Q 003668          157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       157 vI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                      .|...   +++|+|+|+|++|++.||.||+.++.
T Consensus        79 ~i~~~---~~~~~f~A~s~~e~~~Wi~ai~~a~~  109 (133)
T d2j59m1          79 RLTTS---DCECLFQAEDRDDMLAWIKTIQESSN  109 (133)
T ss_dssp             EEECS---SCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             EEECC---CCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             88649---97899992998999999999999873

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.3e-15  Score=116.21  Aligned_cols=100  Identities=20%  Similarity=0.277  Sum_probs=72.2

Q ss_pred             CEEEEEEEEEECCCC----CCCCCCEEEEEEECC-----EEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCC
Q ss_conf             368886548640799----877872189999588-----16884389999898885101211874634886614505897
Q 003668           83 AVFKSGPLFISSKGI----GWTSWKKRWFILTHT-----SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKK  153 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~----~~ksWkKRwFVL~~~-----sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk  153 (804)
                      .++|+|||+++..+.    ..+.|++|||||++.     .|.||++......+   ...+.|..|.....    ....++
T Consensus        17 ~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~~~~~---~g~i~l~~~~~~~~----~~~~~~   89 (150)
T d1wg7a_          17 GITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEP---KGSIFLDSCMGVVQ----NNKVRR   89 (150)
T ss_dssp             CCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCC---SEEECTTTCCEECC----CCSSCT
T ss_pred             CEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCC---CCCCCCCCCCCCCC----CCCCCC
T ss_conf             88689888875677776644466428999997476786068899514456454---32101245310014----765565


Q ss_pred             EEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             07999834889927999935521288899999977404
Q 003668          154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ  191 (804)
Q Consensus       154 ~~FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~~  191 (804)
                      +||.|...  +.++|+|+|++++|+++||.||+.++..
T Consensus        90 ~~F~i~~~--~~~~~~l~A~s~~e~~~Wi~aL~~~i~~  125 (150)
T d1wg7a_          90 FAFELKMQ--DKSSYLLAADSEVEMEEWITILNKILQL  125 (150)
T ss_dssp             TEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECC--CCEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             47999828--9828999809979999999999999876

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.7e-15  Score=117.06  Aligned_cols=105  Identities=22%  Similarity=0.364  Sum_probs=70.5

Q ss_pred             CCEEEEEEEEEECCCCCCCCCCEEEEEEECCEE-EE-ECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEE
Q ss_conf             836888654864079987787218999958816-88-4389999898885101211874634886614505897079998
Q 003668           82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSL-VF-FRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF  159 (804)
Q Consensus        82 ~~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL-~y-YKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~  159 (804)
                      +.+.|+||||++.+.. .+.|+||||||.++.+ .| |++.....  ..+...+.+..+.+...........+.++|.+.
T Consensus         6 ~~~~~~G~L~K~g~~~-~k~WkkRwfvL~~~~~~~yy~~~~~~~~--~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~   82 (126)
T d1wi1a_           6 SGMKHSGYLWAIGKNV-WKRWKKRFFVLVQVSQYTFAMCSYREKK--AEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAV   82 (126)
T ss_dssp             CCEEEEEEEEEECSSS-CCSCEEEEEEEEEEETTEEEEEECCSSS--SCCSEEEECSSCEEEECCCCSSCCSCSSEEEEE
T ss_pred             CCCCEEEEEEEECCCC-CCCCEEEEEEEECCCEEEEEECCCCCCC--CCCEEEEEECEEEEEECCCCCCCCCCCEEEEEC
T ss_conf             9986888999978998-8872279999958956999973400234--331024630003553012222333442147851


Q ss_pred             ECCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf             348899279999355212888999999774048
Q 003668          160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQA  192 (804)
Q Consensus       160 ~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~~a  192 (804)
                      ..   +++|+|+|+|++|+.+||.||..++..+
T Consensus        83 ~~---~r~~~f~A~s~~e~~~Wv~al~~a~~~~  112 (126)
T d1wi1a_          83 KE---GDTVIFASDDEQDRILWVQAMYRATGQS  112 (126)
T ss_dssp             CS---SCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred             CC---CEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             69---7489999799999999999999998864

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1e-14  Score=114.72  Aligned_cols=104  Identities=24%  Similarity=0.380  Sum_probs=73.7

Q ss_pred             EEEEEEEEEECCCCCCCCCCEEEEEEE--CCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEE-----ECCCCEEE
Q ss_conf             688865486407998778721899995--88168843899998988851012118746348866145-----05897079
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILT--HTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV-----KADKKLLT  156 (804)
Q Consensus        84 v~KEGyL~l~kKg~~~ksWkKRwFVL~--~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~-----~~~Kk~~F  156 (804)
                      ..++|||+++.+.. .+.|+||||||.  ++.|.||++.++..+.+.    +.+..|.+.....+..     .....+||
T Consensus        15 ~~~~GyL~k~~~~~-~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (126)
T d1v5pa_          15 NRICGFLDIEDNEN-SGKFLRRYFILDTQANCLLWYMDNPQNLAVGA----GAVGSLQLTYISKVSIATPKQKPKTPFCF   89 (126)
T ss_dssp             CCEECCEEEECTTC-SSCEEEEEEEEETTTTEEEEESSCTTTSCTTC----CCSEEEETTTCCEEEECCTTTSCSCSSEE
T ss_pred             CCEEEEEEEECCCC-CCCEEEEEEEEECCCCEEEEEECCCCCCCCCE----EECCCCEEEEEECCCCCCCCCCCCCCCEE
T ss_conf             75566689878988-89736889999758983888603644432211----55366135200000122331012442168


Q ss_pred             EEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             998348899279999355212888999999774048999
Q 003668          157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPST  195 (804)
Q Consensus       157 vI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~~aP~~  195 (804)
                      .+...   .+.|+|+|+|++|+++||.||+.|+...|+.
T Consensus        90 ~~~~~---~r~~~l~Aes~~e~~~Wi~aL~~A~~~~P~s  125 (126)
T d1v5pa_          90 VINAL---SQRYFLQANDQKDLKDWVEALNQASKSGPSS  125 (126)
T ss_dssp             EEECS---SCEEEEECSSHHHHHHHHHHHHHTTTTSSSC
T ss_pred             EECCC---CEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             87079---8059997899999999999999986128999

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.8e-15  Score=115.23  Aligned_cols=100  Identities=26%  Similarity=0.399  Sum_probs=77.6

Q ss_pred             EEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECC-
Q ss_conf             6888654864079987787218999958816884389999898885101211874634886614505897079998348-
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG-  162 (804)
Q Consensus        84 v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~-  162 (804)
                      |+|+|||++++.+.+.+.|++|||||+++.|.||+++.+..+    ...+.+.++.+....  .....+++||.+.+.. 
T Consensus         3 vik~GwL~k~~~~~~~~~WkkRwFvL~~~~L~yyk~~~~~~~----~~~i~l~~~~v~~~~--~~~~~~~~~F~l~~~~~   76 (111)
T d2dyna_           3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEK----KYMLSVDNLKLRDVE--KGFMSSKHIFALFNTEQ   76 (111)
T ss_dssp             EEEEEEEEETTCCTTTTSSEEEEEEEESSEEEEESSTTCCCE----EEEEECTTEEEEEEC--CCSTTCSEEEEEEESSC
T ss_pred             EEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEECCHHHCCC----CCCCCCCCCEEEEEC--CCCCCCCCCEEEEECCC
T ss_conf             999702999789987687368899997999989765344354----455653221157631--33223545277211133


Q ss_pred             ----CCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             ----899279999355212888999999774
Q 003668          163 ----RDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       163 ----~dgrty~LqA~SeeE~~eWI~AL~~ai  189 (804)
                          .++++|+|+|++++|+.+|+.||..|.
T Consensus        77 ~~~~~~~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          77 RNVYKDYRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             SCSBTTBSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             3223675069997799999999999999702

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-14  Score=113.93  Aligned_cols=103  Identities=22%  Similarity=0.324  Sum_probs=74.8

Q ss_pred             CCEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEEC
Q ss_conf             83688865486407998778721899995881688438999989888510121187463488661450589707999834
Q 003668           82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        82 ~~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~  161 (804)
                      +.++|+|||.+  ++ ..++|++|||||+++.|.||+++.+..+.    -.+.|..|.+...    ....+.+||.+...
T Consensus         6 ~~~~~~GwLkk--~~-~~k~WkkRwfvL~~~~L~yyk~~~~~~~~----g~i~L~~~~v~~~----~~~~~~~~f~i~~~   74 (130)
T d1v88a_           6 SGIVMADWLKI--RG-TLKSWTKLWCVLKPGVLLIYKTQKNGQWV----GTVLLNACEIIER----PSKKDGFCFKLFHP   74 (130)
T ss_dssp             SSCCEEEEEEE--CC-SSSSCEEEEEEEETTEEEEESCSSSCCCC----EEEECSSCEECCC----CTTTSSCEEEEECT
T ss_pred             CCCEEECEEEE--CC-CCCCCEEEEEEEECCEEEEECCCCCCCCE----EEEECCCEEEEEC----CCCCCCCEEEEECC
T ss_conf             89739685996--89-79982388999919999998578877514----6898897599986----65688854999868


Q ss_pred             CC---------------------CCCEEEEEECCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             88---------------------99279999355212888999999774048999
Q 003668          162 GR---------------------DGRAFTLKAESLEDLYDWKTALENALAQAPST  195 (804)
Q Consensus       162 ~~---------------------dgrty~LqA~SeeE~~eWI~AL~~ai~~aP~~  195 (804)
                      ..                     ..+.|+|+|++++|+++||.||+.++...|+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~~~p~s  129 (130)
T d1v88a_          75 LEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGPSS  129 (130)
T ss_dssp             TCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCEECCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             8851001257665542258843895799998899999999999999996139899

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.8e-14  Score=113.17  Aligned_cols=107  Identities=20%  Similarity=0.308  Sum_probs=73.8

Q ss_pred             CEEEEEEEEEE------CCCCCCCCCCEEEEEEECCE------EEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEEC
Q ss_conf             36888654864------07998778721899995881------6884389999898885101211874634886614505
Q 003668           83 AVFKSGPLFIS------SKGIGWTSWKKRWFILTHTS------LVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKA  150 (804)
Q Consensus        83 ~v~KEGyL~l~------kKg~~~ksWkKRwFVL~~~s------L~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~  150 (804)
                      .+.|+|||...      +++.+.++|++|||||++..      |.||+++.+..+...    +.+..+............
T Consensus        17 ~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~~g~----i~l~~~~~~~~~~~~~~~   92 (136)
T d1v5ma_          17 DIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVS----IPLSAIIEVRTTMPLEMP   92 (136)
T ss_dssp             SCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSC----EETTTCCBCCCCCCSSSC
T ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC----EECCCCEEEEEECCCCCC
T ss_conf             0468988775213555688977787538999996776653111333075001275764----002451345410133578


Q ss_pred             CCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             897079998348899279999355212888999999774048999
Q 003668          151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPST  195 (804)
Q Consensus       151 ~Kk~~FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~~aP~~  195 (804)
                      .++++|.|...  +++.|+|+|+|++|+++||.+|+.++...|+.
T Consensus        93 ~~~~~F~l~t~--~~~~y~f~A~s~~e~~~Wv~ai~~ai~~~~~s  135 (136)
T d1v5ma_          93 EKDNTFVLKVE--NGAEYILETIDSLQKHSWVADIQGCVDSGPSS  135 (136)
T ss_dssp             CCTTEECCBCT--TSCBEEEECSSHHHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             88718999868--99699998799999999999999997329999

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=2.6e-14  Score=112.07  Aligned_cols=102  Identities=18%  Similarity=0.308  Sum_probs=78.2

Q ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECC
Q ss_conf             36888654864079987787218999958816884389999898885101211874634886614505897079998348
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~  162 (804)
                      ..+++|||++++.+.  +.|++|||||+++.|+||++..+..+.    ..+.+..+.+...   .....++++|.|... 
T Consensus         7 ~~~~~G~L~k~~~~~--~~W~kr~~vL~~~~L~~~k~~~~~~~~----~~i~l~~~~~~~~---~~~~~~~~~F~i~~~-   76 (109)
T d1wgqa_           7 GSTMSGYLYRSKGSK--KPWKHLWFVIKNKVLYTYAASEDVAAL----ESQPLLGFTVTLV---KDENSESKVFQLLHK-   76 (109)
T ss_dssp             SCSCEEEEEEESSTT--SCCEEEEEEEETTEEEEESCTTCSSCS----EEEECSSEEEEEC---CCSSCSSSEEEEEET-
T ss_pred             CCCEEEEEEEECCCC--CCCEEEEEEEECCEEEEECCCCCCCCC----CCCCCCEEEEEEC---CCCCCCCEEEEEECC-
T ss_conf             983899999988999--986388999819999986366655441----1134302455411---245565215445415-


Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             899279999355212888999999774048999
Q 003668          163 RDGRAFTLKAESLEDLYDWKTALENALAQAPST  195 (804)
Q Consensus       163 ~dgrty~LqA~SeeE~~eWI~AL~~ai~~aP~~  195 (804)
                       +++.|+|+|+++++++.||.||+.++...|+.
T Consensus        77 -~~~~~~f~a~s~~~~~~Wi~ai~~a~~~~ps~  108 (109)
T d1wgqa_          77 -GMVFYVFKADDAHSTQRWIDAFQEGTVSGPSS  108 (109)
T ss_dssp             -TEEEEEEECSSHHHHHHHHHHHHHHHSCCCCC
T ss_pred             -CCEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             -63479997799999999999999996259989

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.9e-14  Score=110.85  Aligned_cols=107  Identities=20%  Similarity=0.379  Sum_probs=78.1

Q ss_pred             CCEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEEC
Q ss_conf             83688865486407998778721899995881688438999989888510121187463488661450589707999834
Q 003668           82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        82 ~~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~  161 (804)
                      +.++|+|||+++.  ...++|++|||+|+++.|+||+++++..+.    ..+.|..+.+..... .......++|.+...
T Consensus         6 s~~~k~G~L~K~~--~~~k~WkkR~fvL~~~~l~y~~~~~~~~~~----~~~~l~~~~~~~~~~-~~~~~~~~~f~l~~~   78 (118)
T d1v89a_           6 SGPIKMGWLKKQR--SIVKNWQQRYFVLRAQQLYYYKDEEDTKPQ----GCMYLPGCTIKEIAT-NPEEAGKFVFEIIPA   78 (118)
T ss_dssp             SCEEEEEEEEEEC--SSSSCEEEEEEEEETTEEEEESSSSCCSCS----EEECSTTEEEEEECC-CSSCCCCCEEEEEES
T ss_pred             CCCEEEEEEEEEC--CCCCCCEEEEEEEECCEEEEECCCCCCCCC----CEECCCCEEEEEECC-CCCCCCCCEEEEECC
T ss_conf             9972899999978--999982789999989999986266754333----206067519998404-445678717999637


Q ss_pred             C-----CCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             8-----899279999355212888999999774048999
Q 003668          162 G-----RDGRAFTLKAESLEDLYDWKTALENALAQAPST  195 (804)
Q Consensus       162 ~-----~dgrty~LqA~SeeE~~eWI~AL~~ai~~aP~~  195 (804)
                      .     ...++|+|+|++++|+++||.||+.++..+|+.
T Consensus        79 ~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~~~p~s  117 (118)
T d1v89a_          79 SWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPSS  117 (118)
T ss_dssp             CCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCCCEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             876201388279998199999999999999997459899

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-14  Score=113.25  Aligned_cols=95  Identities=24%  Similarity=0.256  Sum_probs=72.4

Q ss_pred             EEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECCC
Q ss_conf             68886548640799877872189999588168843899998988851012118746348866145058970799983488
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        84 v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~~  163 (804)
                      ..|+|||++++  ...++|++|||||+++.|.||+++.+..+.    ..+.|..|.....   .....+.+||.|...  
T Consensus         4 ~~KeG~L~K~~--~~~k~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~~v~~---~~~~~~~~~F~i~~~--   72 (100)
T d1faoa_           4 GTKEGYLTKQG--GLVKTWKTRWFTLHRNELKYFKDQMSPEPI----RILDLTECSAVQF---DYSQERVNCFCLVFP--   72 (100)
T ss_dssp             TCEEEEEEEEC--SSSCCEEEEEEEEETTEEEEESSTTCSSCS----EEEEGGGCCEEEE---ECSSSSSSEEEEEET--
T ss_pred             CCEEEEEEEEC--CCCCCCEEEEEEEECCEEEEEECCCCCCCC----EEEECHHEEEEEE---CCCCCCCCCCCCCCC--
T ss_conf             65799999968--999982689999989999998535776576----0782011589871---654345662324369--


Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             992799993552128889999997740
Q 003668          164 DGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       164 dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                       .++|+|+|+|+++++.||.||+.++.
T Consensus        73 -~r~~~l~a~s~~~~~~Wi~ai~~~i~   98 (100)
T d1faoa_          73 -FRTFYLCAKTGVEADEWIKILRWKLS   98 (100)
T ss_dssp             -TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             -CEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             -82899990999999999999999986

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=2.3e-14  Score=112.39  Aligned_cols=99  Identities=16%  Similarity=0.291  Sum_probs=75.9

Q ss_pred             EEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECCCC
Q ss_conf             88865486407998778721899995881688438999989888510121187463488661450589707999834889
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD  164 (804)
Q Consensus        85 ~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~~d  164 (804)
                      +|+||||+....  .+.|++|||+|.++.|.||+++.+..+.    ..+.+.+|.+....  .....+.++|.|......
T Consensus         2 iK~G~L~k~~~~--~k~W~kR~fvL~~~~L~yy~~~~~~~~~----~~i~l~~~~v~~~~--~~~~~~~~~f~i~~~~~~   73 (101)
T d2fjla1           2 IKNGILYLEDPV--NHEWYPHYFVLTSSKIYYSEETSSDLLR----GVLDVPACQIAIRP--EGKNNRLFVFSISMPSVA   73 (101)
T ss_dssp             CEEEEEEEEETT--TTEEEEEEEEEETTEEEECCCCSCTCCC----EEECSTTCEEEEET--TCSSSCSCEEEEECTTTS
T ss_pred             CEEEEEEEECCC--CCCCEEEEEEEECCEEEEEECCCCCEEC----CEEECCCCEEEEEE--EECCCCCCEEEEECCCCC
T ss_conf             568999997688--8987289999979998997043644022----23871785167652--101245514699605666


Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             927999935521288899999977404
Q 003668          165 GRAFTLKAESLEDLYDWKTALENALAQ  191 (804)
Q Consensus       165 grty~LqA~SeeE~~eWI~AL~~ai~~  191 (804)
                      +++|+|+|++++|+.+||.||+.+++.
T Consensus        74 ~~~~~~~a~s~~e~~~Wi~ai~~~~~~  100 (101)
T d2fjla1          74 QWSLDVAADSQEELQDWVKKIREVAQT  100 (101)
T ss_dssp             SCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             379999909999999999999999854

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.9e-15  Score=115.21  Aligned_cols=108  Identities=15%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             CEEEEEEEEEECCCC---CCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCC---------------
Q ss_conf             368886548640799---87787218999958816884389999898885101211874634886---------------
Q 003668           83 AVFKSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSG---------------  144 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~---~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~---------------  144 (804)
                      .|++||||.++.++.   ..++|++|||||+++.|.||+++.+......+...+.|..+......               
T Consensus         2 ~vi~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~   81 (169)
T d1btka_           2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             CEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf             47799899973699877676783189999979977022364110014576634760232787750366788743323333


Q ss_pred             --------CEEEECCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf             --------6145058970799983488992799993552128889999997740489
Q 003668          145 --------SVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAP  193 (804)
Q Consensus       145 --------sv~~~~~Kk~~FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~~aP  193 (804)
                              .+.....+.++|.|...   .++|+|+|+|++|++.||.||+.++...+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~F~I~t~---~rt~~l~A~s~eE~~~WI~aL~~~i~~~~  135 (169)
T d1btka_          82 GEESSEMEQISIIERFPYPFQVVYD---EGPLYVFSPTEELRKRWIHQLKNVIRYNS  135 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEEET---TCCEEEEESCHHHHHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEC---CCEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf             4443332222235566754699958---93799978999999999999999998680

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6e-14  Score=109.55  Aligned_cols=99  Identities=18%  Similarity=0.249  Sum_probs=72.2

Q ss_pred             CCEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEEC
Q ss_conf             83688865486407998778721899995881688438999989888510121187463488661450589707999834
Q 003668           82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        82 ~~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~  161 (804)
                      .++.++|||++++++  .+.|++|||||+++.|.||+++++..+.    ..+.|..|......  .......++|.|...
T Consensus         9 ~~~~~eG~L~k~~~~--~k~WkkrwfvL~~~~L~yY~~~~d~~~~----~~i~L~~~~~~~~~--~~~~~~~~~F~i~~~   80 (136)
T d1x1fa1           9 LPLYFEGFLLIKRSG--YREYEHYWTELRGTTLFFYTDKKSIIYV----DKLDIVDLTCLTEQ--NSTEKNCAKFTLVLP   80 (136)
T ss_dssp             SCEEEEEEEEEECTT--CCSCEEEEEEEETTEEEEESCSSCSSCS----EECCCSSCCEEEEC--CCTTSCCCEEEEECS
T ss_pred             CCCCEEEEEEEECCC--CCCEEEEEEEECCCEEEEEEECCCCCCC----CCCCCCCEEEEEEE--CCCCCCCCEEEECCC
T ss_conf             995479899997799--9984789999869976777502454444----20023321232100--112455511550479


Q ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             889927999935521288899999977404
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALENALAQ  191 (804)
Q Consensus       162 ~~dgrty~LqA~SeeE~~eWI~AL~~ai~~  191 (804)
                         .++|+|+|+|++++++|+.+|+.++..
T Consensus        81 ---~~~~~f~Aes~~e~~~Wi~~I~~v~~~  107 (136)
T d1x1fa1          81 ---KEEVQLKTENTESGEEWRGFILTVTEL  107 (136)
T ss_dssp             ---SCCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred             ---CCEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             ---956999929999999999999999861

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.4e-14  Score=112.25  Aligned_cols=101  Identities=22%  Similarity=0.366  Sum_probs=78.3

Q ss_pred             EEEEEEEEEECCCC--CCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEEC
Q ss_conf             68886548640799--8778721899995881688438999989888510121187463488661450589707999834
Q 003668           84 VFKSGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        84 v~KEGyL~l~kKg~--~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~  161 (804)
                      |+|+|||++++++.  +.++|++|||||+++.|.||+++.+..+    ...+.+..|.+...........+.+||.|...
T Consensus         1 vik~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~   76 (106)
T d1u5da1           1 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQP----KGTFLIKGYSVRMAPHLRRDSKKESCFELTSQ   76 (106)
T ss_dssp             EEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSC----SEEEECTTCEEEECGGGCSSGGGGGEEEEECS
T ss_pred             CEEEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCC----CCCCCCCCCEEEECCCCCCCCCCCEEEEEECC
T ss_conf             96999999878999977688189999998999999933355454----24222478567601110245677205799858


Q ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             88992799993552128889999997740
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       162 ~~dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                        ++++|+|+|++++|+.+||.||+.++.
T Consensus        77 --~~~~~~f~a~s~~e~~~W~~ai~~~i~  103 (106)
T d1u5da1          77 --DRRTYEFTATSPAEARDWVDQISFLLK  103 (106)
T ss_dssp             --SSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             --CCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             --981999992999999999999999999

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=5.7e-14  Score=109.73  Aligned_cols=102  Identities=24%  Similarity=0.362  Sum_probs=76.3

Q ss_pred             CCEEEEEEEEEECCCC--CCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEE
Q ss_conf             8368886548640799--87787218999958816884389999898885101211874634886614505897079998
Q 003668           82 NAVFKSGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF  159 (804)
Q Consensus        82 ~~v~KEGyL~l~kKg~--~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~  159 (804)
                      +.++|+|||++++.+.  +.++|++|||||+++.|.||+++.+..+.    ..+.|..+.............+.++|.+.
T Consensus         7 ~~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~y~~~~~~~p~----g~i~L~~~~~~~~~~~~~~~~~~~~f~i~   82 (111)
T d1u5fa1           7 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK----GEFAIDGYDVRMNNTLRKDGKKDCCFEIC   82 (111)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCS----EEEECTTCEEEECTTSCSSTTGGGEEEEE
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCCCC----EEEEECCCEEEEECCCCCCCCCCCEEEEE
T ss_conf             98429999999789999776772699999989999762366555763----38971254788604532211344147998


Q ss_pred             ECCCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             348899279999355212888999999774
Q 003668          160 PDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       160 ~~~~dgrty~LqA~SeeE~~eWI~AL~~ai  189 (804)
                      ..  ++++|+|+|++++|++.|+.||+.++
T Consensus        83 ~~--~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          83 AP--DKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             CT--TSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CC--CCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             15--89689998299999999999999986

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3e-14  Score=111.57  Aligned_cols=105  Identities=18%  Similarity=0.371  Sum_probs=73.3

Q ss_pred             CCEEEEEEEEEECCCCCCCCCCEEEEEEEC--CEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCE----EEECCCCEE
Q ss_conf             836888654864079987787218999958--81688438999989888510121187463488661----450589707
Q 003668           82 NAVFKSGPLFISSKGIGWTSWKKRWFILTH--TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV----VVKADKKLL  155 (804)
Q Consensus        82 ~~v~KEGyL~l~kKg~~~ksWkKRwFVL~~--~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv----~~~~~Kk~~  155 (804)
                      +.+.+||||++++.  ..+.|++|||||+.  ..|+||+++++..+..    .+.+..|........    .....+.++
T Consensus         6 s~~~~eG~L~k~~~--~~k~WkkR~fvL~~~~~~L~~~~~~~~~~p~g----~i~l~~~~~v~~~~~~~~~~~~~~~~~~   79 (117)
T d1v5ua_           6 SGRSYEGILYKKGA--FMKPWKARWFVLDKTKHQLRYYDHRMDTECKG----VIDLAEVEAVAPGTPTIGAPKTVDEKAF   79 (117)
T ss_dssp             CSSSEEEEEEECCC--SSSCCEEEEEEEETTTTEEEEESSSSCSSCCC----EEEGGGEEEEECCCCCTTSCSSSCTTTC
T ss_pred             CCCEEEEEEEEECC--CCCCCEEEEEEEECCCCEEEECCCCCCCCCCE----EEEECCEEEEEECCCCCCCCCCCCCCEE
T ss_conf             99818999999899--99985189999958989898515534467631----7870443898503653111345664158


Q ss_pred             EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9998348899279999355212888999999774048999
Q 003668          156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPST  195 (804)
Q Consensus       156 FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~~aP~~  195 (804)
                      |.+...   +++|+|+|++++|+++||.+|+.++...|+.
T Consensus        80 ~~~~~~---~~~~~~~a~s~~e~~~Wv~~l~~ai~~~pss  116 (117)
T d1v5ua_          80 FDVKTT---RRVYNFCAQDVPSAQQWVDRIQSCLSSGPSS  116 (117)
T ss_dssp             EEEEES---SCEEEEECSSHHHHHHHHHHHHTTCCCCCCC
T ss_pred             EEEECC---CCEEEEEECCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             996089---9379999099999999999999998529999

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=114.70  Aligned_cols=95  Identities=17%  Similarity=0.257  Sum_probs=72.4

Q ss_pred             EEEEEEEEEECC-CCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECC
Q ss_conf             688865486407-9987787218999958816884389999898885101211874634886614505897079998348
Q 003668           84 VFKSGPLFISSK-GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        84 v~KEGyL~l~kK-g~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~  162 (804)
                      +.|+|||+++.+ |...+.|++|||||+++.|+||++.... +    ...+.|..|.+...    ....+++||.|....
T Consensus         5 ~~k~G~L~k~~~~g~~~k~W~kRwfvL~~~~L~y~~~~~~~-~----~~~i~l~~~~v~~~----~~~~~~~~f~i~~~~   75 (101)
T d2elba2           5 TRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVA-G----GLAMDIDNCSVMAV----DCEDRRYCFQITSFD   75 (101)
T ss_dssp             SCCEEEEEECSCCC----CCCEEEEEEETTEEEEECTTCCC-E--------EEEECCCCCC----CCCCSSSSSEECCCS
T ss_pred             CCEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEECCCCCC-C----CEEEEECCCCCCCC----CCCCCCCEEEEEEEC
T ss_conf             64868988753389986652799999959979878168755-5----22898614312121----246776147887530


Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             89927999935521288899999977
Q 003668          163 RDGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       163 ~dgrty~LqA~SeeE~~eWI~AL~~a  188 (804)
                       ..++|+|+|+|++|+.+||.||+.+
T Consensus        76 -~~~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          76 -GKKSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             -SSCCCCEECSSHHHHHHHHHHHHHT
T ss_pred             -CCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf             -4403899779999999999999850

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-13  Score=106.46  Aligned_cols=92  Identities=25%  Similarity=0.363  Sum_probs=71.7

Q ss_pred             EEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECCCC
Q ss_conf             88865486407998778721899995881688438999989888510121187463488661450589707999834889
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD  164 (804)
Q Consensus        85 ~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~~d  164 (804)
                      +|+|||++++.. +.+.|++|||||+++.|.||+++.+..+.    ..+.|..|..       +...+.++|.|...   
T Consensus         2 ik~G~L~K~~~~-~~~~W~kr~fvL~~~~L~~~~~~~~~~~~----~~i~L~~~~~-------~~~~~~~~f~i~~~---   66 (102)
T d2coda1           2 VKSGWLDKLSPQ-GKRMFQKRWVKFDGLSISYYNNEKEMYSK----GIIPLSAIST-------VRVQGDNKFEVVTT---   66 (102)
T ss_dssp             CEEEEEEECCSS-SSSCCEEEEEEECSSEEEEEESSCCSSCC----CEEETTTEEE-------EEEETTTEEEEEES---
T ss_pred             CEEEEEEEECCC-CCCCCEEEEEEEECCEEEEEECCCCCEEE----EEEECHHCEE-------ECCCCCEEEEEECC---
T ss_conf             389999997999-99982579999979999888426762147----7889036266-------22344125899749---


Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             927999935521288899999977404
Q 003668          165 GRAFTLKAESLEDLYDWKTALENALAQ  191 (804)
Q Consensus       165 grty~LqA~SeeE~~eWI~AL~~ai~~  191 (804)
                      +++|+|+|+|++|+..|+.||..++..
T Consensus        67 ~~~~~l~a~s~~e~~~Wi~ai~~~i~~   93 (102)
T d2coda1          67 QRTFVFRVEKEEERNDWISILLNALKS   93 (102)
T ss_dssp             SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             917999949999999999999999984

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=107.90  Aligned_cols=96  Identities=17%  Similarity=0.234  Sum_probs=67.5

Q ss_pred             EEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEEC-CCCCE--EEECCCCEEEEEEEC
Q ss_conf             888654864079987787218999958816884389999898885101211874634-88661--450589707999834
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN-NSGSV--VVKADKKLLTVLFPD  161 (804)
Q Consensus        85 ~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~-~s~sv--~~~~~Kk~~FvI~~~  161 (804)
                      +|+|||.++..+  .++|++|||||+++.|.||+++.+..+.+    .+.|..+... .....  .....+.+||.|.+.
T Consensus         2 lk~GwL~k~~~~--~~~wkkRwFvL~~~~L~YYk~~~~~~p~g----~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~   75 (112)
T d2coaa1           2 LREGWVVHYSNK--DTLRKRHYWRLDCKCITLFQNNTTNRYYK----EIPLSEILTVESAQNFSLVPPGTNPHCFEIVTA   75 (112)
T ss_dssp             SEEEEEEECCSS--SCCCEEEEEEECSSEEEEESSSSCSSCSE----EEETTTCCEEEESCCCSSSCTTSCCEEEEEECS
T ss_pred             CEEEEEEEECCC--CCCEEEEEEEEECCEEEEEECCCCCCCCE----EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf             337878998789--98705889999725678981358876441----882002301013334332125788527999848


Q ss_pred             CCCCCEEEEEE-----------CCHHHHHHHHHHHHHHH
Q ss_conf             88992799993-----------55212888999999774
Q 003668          162 GRDGRAFTLKA-----------ESLEDLYDWKTALENAL  189 (804)
Q Consensus       162 ~~dgrty~LqA-----------~SeeE~~eWI~AL~~ai  189 (804)
                         .|+|+|.|           ++++++..|++||+.|+
T Consensus        76 ---~rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~  111 (112)
T d2coaa1          76 ---NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  111 (112)
T ss_dssp             ---SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             ---CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             ---847998537866666533357699999999999962

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.9e-13  Score=104.93  Aligned_cols=99  Identities=23%  Similarity=0.394  Sum_probs=72.5

Q ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECC
Q ss_conf             36888654864079987787218999958816884389999898885101211874634886614505897079998348
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~  162 (804)
                      ++.++|||++++++. .+.|++|||||+++.|+||+++.+..+    ...+.+.++.+..... .....++++|.+..  
T Consensus         8 ~~~~~G~L~k~~~~~-~k~W~kr~~vL~~~~L~~y~~~~~~~~----~~~i~l~~~~v~~~~~-~~~~~~~~~~~i~~--   79 (107)
T d1upqa_           8 PVHIRGWLHKQDSSG-LRLWKRRWFVLSGHCLFYYKDSREESV----LGSVLLPSYNIRPDGP-GAPRGRRFTFTAEH--   79 (107)
T ss_dssp             CEEEEEEEEEECSSS-SCCEEEEEEEEETTEEEEESSTTCCSC----CEEEEGGGCEEEECCS-SCTTSSSSEEEEEC--
T ss_pred             CEEEEEEEEEECCCC-CCCEEEEEEEEECCEEEEECCCCCCCC----CCEECCCCEEEEEECC-CCCCCCCEEEEEEC--
T ss_conf             601899999838999-998069999998999988447454566----5216354308987226-75458655999976--


Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             899279999355212888999999774
Q 003668          163 RDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       163 ~dgrty~LqA~SeeE~~eWI~AL~~ai  189 (804)
                      .++++|+|+|+|++|+++|+.||+.|.
T Consensus        80 ~~~~~~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          80 PGMRTYVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             TTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             999599998699999999999999974

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-13  Score=107.44  Aligned_cols=99  Identities=22%  Similarity=0.365  Sum_probs=71.0

Q ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECC
Q ss_conf             36888654864079987787218999958816884389999898885101211874634886614505897079998348
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~  162 (804)
                      .|+|+|||++++.  ..++|++|||||.+..|.||+++.+..+.    ..+.+..|...............++|.+... 
T Consensus         2 ~vik~G~L~K~~~--~~~~Wkkr~fvL~~~~l~yy~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~-   74 (103)
T d1eaza_           2 AVIKAGYCVKQGA--VMKNWKRRYFQLDENTIGYFKSELEKEPL----RVIPLKEVHKVQECKQSDIMMRDNLFEIVTT-   74 (103)
T ss_dssp             CCSEEEEEEEECT--TTCCEEEEEEEECSSEEEEESSTTCSSCS----EEEEGGGCCEEEECTTHHHHTCSSEEEEECS-
T ss_pred             CEEEEEEEEEECC--CCCCEEEEEEEEECCEEEEEECCCCCCCC----EEEECCCEEEEECCCCCCCCCCCEEEEEEEC-
T ss_conf             6599999999879--99990589999989998999604676630----4897321177602455443455157999719-


Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             8992799993552128889999997740
Q 003668          163 RDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       163 ~dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                        +++|+|+|+|++|+++|+.||+.++.
T Consensus        75 --~~~~~~~a~s~~e~~~W~~aI~~ai~  100 (103)
T d1eaza_          75 --SRTFYVQADSPEEMHSWIKAVSGAIV  100 (103)
T ss_dssp             --SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             --CEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             --98999995999999999999999999

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=3e-13  Score=104.82  Aligned_cols=96  Identities=21%  Similarity=0.313  Sum_probs=68.4

Q ss_pred             CCEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEEC
Q ss_conf             83688865486407998778721899995881688438999989888510121187463488661450589707999834
Q 003668           82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        82 ~~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~  161 (804)
                      ..++++|||++++.+ ..+.|++|||||.++.|.||++..+..      ..+.+..|....    .....+++||.+...
T Consensus         8 ~~~i~eG~L~K~g~~-~~~~WkkR~fvL~~~~L~yy~~~~~~~------~~i~l~~~~~v~----~~~~~~~~~f~i~~~   76 (119)
T d1omwa2           8 KDCIMHGYMSKMGNP-FLTQWQRRYFYLFPNRLEWRGEGEAPQ------SLLTMEEIQSVE----ETQIKERKCLLLKIR   76 (119)
T ss_dssp             SCCCEEEEEEECC-------CEEEEEEEETTEEEEECTTSCCC------EEEEGGGEEEEE----EEESSSCEEEEEEET
T ss_pred             CCEEEEEEEEEECCC-CCCCEEEEEEEEECCEEEEEECCCCCC------CCCEECCCCCCC----CCCCCCCCEEEEECC
T ss_conf             982799999987899-888727889999818278981233457------641010320022----224445515999758


Q ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             88992799993552128889999997740
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       162 ~~dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                        ++++|+|+|+|++|+..|+.||+.++.
T Consensus        77 --~~~~~~f~a~s~~e~~~W~~al~~a~~  103 (119)
T d1omwa2          77 --GGKQFVLQCDSDPELVQWKKELRDAYR  103 (119)
T ss_dssp             --TSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             --CCCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             --982899978998999899999999999

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.46  E-value=1.3e-13  Score=107.27  Aligned_cols=108  Identities=21%  Similarity=0.304  Sum_probs=74.7

Q ss_pred             CEEEEEEEEEEC------CCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCC--CCEEEECCCEEECCCCCEEEECCCCE
Q ss_conf             368886548640------7998778721899995881688438999989888--51012118746348866145058970
Q 003668           83 AVFKSGPLFISS------KGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKG--SEVNLTLGGIDLNNSGSVVVKADKKL  154 (804)
Q Consensus        83 ~v~KEGyL~l~k------Kg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~--~e~~i~L~~i~l~~s~sv~~~~~Kk~  154 (804)
                      .+.+||||.++.      ++...+.|++|||||++..|+||+++....+...  ....+.+..|......   ....+.+
T Consensus         7 g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   83 (123)
T d1wjma_           7 GEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAF---DYRKRKH   83 (123)
T ss_dssp             CCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECT---TCSSCSS
T ss_pred             CCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEECCHHCCCCCCCCCCCCCCCCCEEEEECC---CCCCCCC
T ss_conf             8816899997745356674467888719999998999999856101233334233243234423687543---3443672


Q ss_pred             EEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             79998348899279999355212888999999774048999
Q 003668          155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPST  195 (804)
Q Consensus       155 ~FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~~aP~~  195 (804)
                      ||.+...  ++++|+|+|+|+++++.||.||+.++...|+.
T Consensus        84 ~f~i~~~--~~~~~~l~a~s~~e~~~Wi~aI~~a~~~~P~~  122 (123)
T d1wjma_          84 VFKLGLQ--DGKEYLFQAKDEAEMSSWLRVVNAAIASGPSS  122 (123)
T ss_dssp             EEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHHCCCC
T ss_pred             EEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             8999859--99599997799999999999999998618989

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-13  Score=105.95  Aligned_cols=102  Identities=17%  Similarity=0.285  Sum_probs=72.9

Q ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECC-EEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEEC
Q ss_conf             368886548640799877872189999588-1688438999989888510121187463488661450589707999834
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHT-SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~-sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~  161 (804)
                      .|+|+|||++++  ...++|++|||||+++ .|.||++.++..+.    ..+.+..|.+.....+.....+.++|.+...
T Consensus         6 ~v~k~G~L~K~~--~~~k~Wk~RwfvL~~~~~l~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~   79 (118)
T d1unqa_           6 AIVKEGWLHKRG--EYIKTWRPRYFLLKNDGTFIGYKERPQDVDQ----REAPLNNFSVAQCQLMKTERPRPNTFIIRCL   79 (118)
T ss_dssp             CEEEEEEEEEEC--SSSCCEEEEEEEEETTSEEEEESSCCCSHHH----HTSCSEEEECTTCEEEEECSSSTTEEEEEEE
T ss_pred             CEEEEEEEEEEC--CCCCCCEEEEEEEECCCEEEEEEECCCCCCC----CCCCCCCEEEEECCCCCCCCCCCCEEEEEEC
T ss_conf             788999999989--9999967789999455226899601576544----5413540577300111344357724999953


Q ss_pred             C-CCCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             8-8992799993552128889999997740
Q 003668          162 G-RDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       162 ~-~dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                      . ...+.|+|+|+|++|+..||.||+.++.
T Consensus        80 ~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~  109 (118)
T d1unqa_          80 QWTTVIERTFHVETPEEREEWTTAIQTVAD  109 (118)
T ss_dssp             ETTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             653405799994999999999999999999

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=9.5e-13  Score=101.43  Aligned_cols=100  Identities=21%  Similarity=0.424  Sum_probs=70.4

Q ss_pred             EEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEEC---
Q ss_conf             88865486407998778721899995881688438999989888510121187463488661450589707999834---
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD---  161 (804)
Q Consensus        85 ~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~---  161 (804)
                      .|+|||++++.  ..+.|++|||||+++.|.||+++++..+.    ..+.|..|.+...    ....+.++|.+...   
T Consensus         6 ~keG~L~K~~~--~~k~WkrR~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~----~~~~~~~~~~~~~~~~~   75 (127)
T d1fgya_           6 DREGWLLKLGG--RVKTWKRRWFILTDNCLYYFEYTTDKEPR----GIIPLENLSIREV----LDPRKPNCFELYNPSHK   75 (127)
T ss_dssp             SEEEEEEEECS--SSCCEEEEEEEEETTEEEEESSTTCSSCS----EEEECTTCEEEEE----CCSSCSSEEEEECSSST
T ss_pred             CEEEEEEEECC--CCCCCEEEEEEEECCEEEEECCCCCCCCC----CEEECCCEEEEEC----CCCCCCCEEEEECCCCC
T ss_conf             65999999789--99985789999989999898367876665----0585787199980----47778863898536656


Q ss_pred             ----------------CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             ----------------889927999935521288899999977404899
Q 003668          162 ----------------GRDGRAFTLKAESLEDLYDWKTALENALAQAPS  194 (804)
Q Consensus       162 ----------------~~dgrty~LqA~SeeE~~eWI~AL~~ai~~aP~  194 (804)
                                      ....++|+|+|+|++|+.+||.||+.++...|.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~~~~  124 (127)
T d1fgya_          76 GQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPF  124 (127)
T ss_dssp             TCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             5321112444430476079719999879999999999999999731998

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=2.1e-13  Score=105.86  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=69.4

Q ss_pred             CEEEEEEEEEEC------CCCCCCCCCEEEEEEECCEEEEECCCCCCCCCC----CCCEEEECCCEEECCCCCEEEECCC
Q ss_conf             368886548640------799877872189999588168843899998988----8510121187463488661450589
Q 003668           83 AVFKSGPLFISS------KGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK----GSEVNLTLGGIDLNNSGSVVVKADK  152 (804)
Q Consensus        83 ~v~KEGyL~l~k------Kg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~----~~e~~i~L~~i~l~~s~sv~~~~~K  152 (804)
                      ...+||||+++.      ++...++|+||||||+++.|.||+++.+..+..    .+...+.+..+.+...   .....+
T Consensus         7 ~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~   83 (122)
T d1droa_           7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIA---SDYTKK   83 (122)
T ss_dssp             SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEEC---CSSSSS
T ss_pred             CCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCEEECCCEEEEEC---CCCCCC
T ss_conf             75258889974014566756689985289999969989998474323446751003330575153389865---545666


Q ss_pred             CEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             70799983488992799993552128889999997740
Q 003668          153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       153 k~~FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                      +++|.+..  .++++|+|+|++++|++.||.||+.++.
T Consensus        84 ~~~~~l~~--~~~~~~~f~a~s~~d~~~Wv~al~~~~~  119 (122)
T d1droa_          84 KHVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             TTEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             60698887--9984999988999999999999999876

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.9e-13  Score=103.36  Aligned_cols=100  Identities=16%  Similarity=0.331  Sum_probs=73.8

Q ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECC
Q ss_conf             36888654864079987787218999958816884389999898885101211874634886614505897079998348
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~  162 (804)
                      .++|+|||++++.  ..++|++|||||.++.|.||+++++..+.    ..+.+..|.+....  .....++++|.+... 
T Consensus         4 ~~ikeG~L~k~~~--~~k~WkkryfvL~~~~L~~y~~~~~~~p~----~~i~l~~~~~~~~~--~~~~~~~~~f~l~~~-   74 (113)
T d1plsa_           4 KRIREGYLVKKGS--VFNTWKPMWVVLLEDGIEFYKKKSDNSPK----GMIPLKGSTLTSPC--QDFGKRMFVFKITTT-   74 (113)
T ss_dssp             CCSEEEEEEEESS--SSSCCEEEEEEEETTEEEEESSTTCSSCS----EEEESSSCCEESSC--CSSCCSSSEEEEEET-
T ss_pred             CCEEEEEEEEECC--CCCCCEEEEEEEECCEEEEEECCCCCCCC----EEEECCCCEEEEEE--CCCCCCCEEEEEECC-
T ss_conf             8548999999589--99995579999989999887057766521----59998567488640--136775147998549-


Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf             899279999355212888999999774048
Q 003668          163 RDGRAFTLKAESLEDLYDWKTALENALAQA  192 (804)
Q Consensus       163 ~dgrty~LqA~SeeE~~eWI~AL~~ai~~a  192 (804)
                       ++++|+|+|+|++|+.+|+.||+.++...
T Consensus        75 -~~~~~~~~a~s~~e~~~Wi~ai~~ai~~~  103 (113)
T d1plsa_          75 -KQQDHFFQAAFLEERDAWVRDINKAIKCI  103 (113)
T ss_dssp             -TTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf             -97599998799999999999999999858

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5e-13  Score=103.30  Aligned_cols=133  Identities=14%  Similarity=0.124  Sum_probs=84.6

Q ss_pred             CCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf             153000133100320369-9854334446899999998899999999999999999998667678983688865486407
Q 003668           17 SCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAGNAVFKSGPLFISSK   95 (804)
Q Consensus        17 d~~~~~~~l~~~iq~tR~-fe~tr~~~e~l~~~~~~m~~~p~~~~~s~~pp~~~~~p~~~~~s~~~~~v~KEGyL~l~kK   95 (804)
                      +.++|+.+|......... +....++....    ..-...|-          ....+        +..++|+|||+++  
T Consensus         2 ~~~~~~~~l~~~~~~l~~~~~~~e~~~~l~----~q~~~~~~----------~~~~~--------g~~ilK~G~L~Kr--   57 (147)
T d1w1ha_           2 NIEQYIHDLDSNSFELDLQFSEDEKRLLLE----KQAGGNPW----------HQFVE--------NNLILKMGPVDKR--   57 (147)
T ss_dssp             CGGGGEEEEETTEEEECSCCCHHHHHHHHH----HHHHHCTT----------GGGTT--------TCCEEEEEEEEEC--
T ss_pred             CHHHHHHHHCCCCCCCCCCCCCHHHHHHHH----CCCCCCCC----------CCCCC--------CCEEEEEEEEEEE--
T ss_conf             578999884011000321236178887775----12677745----------42358--------9748899999962--


Q ss_pred             CCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECCCCCCEEEEEECCH
Q ss_conf             99877872189999588168843899998988851012118746348866145058970799983488992799993552
Q 003668           96 GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESL  175 (804)
Q Consensus        96 g~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~~dgrty~LqA~Se  175 (804)
                      +.  ..|+||||||+++.|.||+++....+         .+.|.+.....  +...++++|.|...   +|+|+|+|. +
T Consensus        58 ~~--~~wkkR~FvL~~~~L~YYkd~~~~~~---------kG~I~L~~~~~--v~~~~~~~F~I~t~---~Rty~l~a~-~  120 (147)
T d1w1ha_          58 KG--LFARRRQLLLTEGPHLYYVDPVNKVL---------KGEIPWSQELR--PEAKNFKTFFVHTP---NRTYYLMDP-S  120 (147)
T ss_dssp             CT--TSCEEEEEEEETTTEEEEEETTTTEE---------EEEECCCTTCE--EEEEETTEEEEECS---SCEEEEECT-T
T ss_pred             CC--CCCEEEEEEECCCEEEEEECCCCCCC---------CCEEEECCCCC--CCCCCCCEEEEECC---CEEEEEECC-H
T ss_conf             37--85347899971880699967876650---------32687302322--23356743899638---668999859-0


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             128889999997740
Q 003668          176 EDLYDWKTALENALA  190 (804)
Q Consensus       176 eE~~eWI~AL~~ai~  190 (804)
                      .|+..||.||+.++.
T Consensus       121 ~d~~~Wv~aI~~v~~  135 (147)
T d1w1ha_         121 GNAHKWCRKIQEVWR  135 (147)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             889999999999999

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.9e-13  Score=101.95  Aligned_cols=94  Identities=20%  Similarity=0.279  Sum_probs=70.2

Q ss_pred             EEEEEEEEECCCCCCCCCCEEEEEEECC---EEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEEC
Q ss_conf             8886548640799877872189999588---1688438999989888510121187463488661450589707999834
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHT---SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        85 ~KEGyL~l~kKg~~~ksWkKRwFVL~~~---sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~  161 (804)
                      ++.|||++++++   +.|+||||||+++   .|+||+++.+..+.    ..+.+.+|.+..... .....+.++|.+...
T Consensus         2 ~~~G~L~~~~~~---k~W~krwfvL~~~~~~~ly~~~~~~~~~~~----~~i~l~~~~~~~~~~-~~~~~~~~~F~i~~~   73 (99)
T d2coca1           2 LLCGPLRLSESG---ETWSEVWAAIPMSDPQVLHLQGGSQDGRLP----RTIPLPSCKLSVPDP-EERLDSGHVWKLQWA   73 (99)
T ss_dssp             SSEEEEEEESSS---SCEEEEEEECCTTCTTCEEEECCTTCSSSC----SEECGGGCEEECCCS-SSCCSSSEEEEEEET
T ss_pred             CEEEEEECCCCC---CCCCEEEEEEECCCCCEEEEECCCCCCCCC----CCCCCCCEEEEECCC-CCCCCCCEEEEEECC
T ss_conf             567988812799---996488999956874099998767653554----452236635640123-445678639998719


Q ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             8899279999355212888999999774
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       162 ~~dgrty~LqA~SeeE~~eWI~AL~~ai  189 (804)
                         +++|+|+|+|++|++.||.||..|+
T Consensus        74 ---~r~~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          74 ---KQSWYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             ---TEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ---CCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             ---9489998899999999999999861

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-12  Score=100.90  Aligned_cols=98  Identities=21%  Similarity=0.330  Sum_probs=66.1

Q ss_pred             EEEEEEEEEECCCCCCCCCCEEEEEEECCEE--EEECCCCCCCCCCCCCEEEECCCEEECCCCCE--EEECCCCEEEEEE
Q ss_conf             6888654864079987787218999958816--88438999989888510121187463488661--4505897079998
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSL--VFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV--VVKADKKLLTVLF  159 (804)
Q Consensus        84 v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL--~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv--~~~~~Kk~~FvI~  159 (804)
                      ++|+|||+++...  .++|++|||||.++.+  +||+++.+..+.    ..+.+..|.+......  .....+.++|.+.
T Consensus         2 v~k~G~L~k~~~~--~k~WkkR~fvL~~~~~~l~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (104)
T d2i5fa1           2 IIKQGCLLKQGHR--RKNWKVRKFILREDPAYLHYYDPAGAEDPL----GAIHLRGCVVTSVESNSNGRKSEEENLFEII   75 (104)
T ss_dssp             EEEEEEEEEECTT--TCCEEEEEEEEETTTTEEEEECTTSCSSCS----EEEECTTCEEEEECC--------CCSEEEEE
T ss_pred             EEEEEEEEEECCC--CCCCEEEEEEEECCEEEEEEECCCCCCCCC----CEEEECCEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf             9999999997799--998388999997881099997675666764----2075033179995267654445676479998


Q ss_pred             ECCCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             348899279999355212888999999774
Q 003668          160 PDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       160 ~~~~dgrty~LqA~SeeE~~eWI~AL~~ai  189 (804)
                      .  .+++.|+|+|+|++|+.+||.||+.|+
T Consensus        76 ~--~~~~~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          76 T--ADEVHYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             C--TTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             C--CCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             7--998499998699999999999999976

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.5e-13  Score=103.05  Aligned_cols=93  Identities=23%  Similarity=0.305  Sum_probs=65.2

Q ss_pred             EEEEEEEEEECCCCCCCCCCEEEEEEECC-------EEEEECCCCCCCCCCCCC-EEEECCCEEECCCCCEEEECCCCEE
Q ss_conf             68886548640799877872189999588-------168843899998988851-0121187463488661450589707
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHT-------SLVFFRSDPSAIPQKGSE-VNLTLGGIDLNNSGSVVVKADKKLL  155 (804)
Q Consensus        84 v~KEGyL~l~kKg~~~ksWkKRwFVL~~~-------sL~yYKd~~~~~~~~~~e-~~i~L~~i~l~~s~sv~~~~~Kk~~  155 (804)
                      |.|+|||.++      ++|++|||||++.       .|.||+++.+.......+ ..+.+..|.....   .....+++|
T Consensus         2 v~k~GyL~K~------k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~---~~~~~~~~~   72 (103)
T d1qqga1           2 VRKVGYLRKP------KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINK---RADSKNKHL   72 (103)
T ss_dssp             EEEEEEEECT------TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEE---ECCSSCSSE
T ss_pred             CCEEEEEEEC------CCCCEEEEEEECCCCCCCCCEEEEECCHHHHHCCCCCCCCEEECCEEEEEEE---CCCCCCCEE
T ss_conf             5566799873------8997899999466346874188887365353024641265686020447861---145787469


Q ss_pred             EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             999834889927999935521288899999977
Q 003668          156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       156 FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~a  188 (804)
                      |.+...   +++|+|+|+|++|+.+||.||+..
T Consensus        73 f~i~t~---~r~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          73 VALYTR---DEHFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             EEEEES---SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEEEC---CEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             999719---969999949999999999999852

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.39  E-value=4.2e-13  Score=103.81  Aligned_cols=98  Identities=22%  Similarity=0.317  Sum_probs=68.2

Q ss_pred             EEEEEEEEC------CCCCCCCCCEEEEEEECCEEEEECCCCCCCC--CCCCCEEEECCCEEECCCCCEEEECCCCEEEE
Q ss_conf             886548640------7998778721899995881688438999989--88851012118746348866145058970799
Q 003668           86 KSGPLFISS------KGIGWTSWKKRWFILTHTSLVFFRSDPSAIP--QKGSEVNLTLGGIDLNNSGSVVVKADKKLLTV  157 (804)
Q Consensus        86 KEGyL~l~k------Kg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~--~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~Fv  157 (804)
                      +||||+++.      ++...++|++|||||+++.|.||+++.+..+  ...+...+.+..|.+...   .....+++||.
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~~~---~~~~~~~~~f~   77 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVA---LDYKKKKHVFK   77 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEEC---SSCCSSSSEEE
T ss_pred             CEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEECHHHCCCCCCCCCCEEEEECCCEEEEC---CCCCCCCCEEE
T ss_conf             924598754846777335789981999999899999995725604466657421587115346642---21346765075


Q ss_pred             EEECCCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             9834889927999935521288899999977
Q 003668          158 LFPDGRDGRAFTLKAESLEDLYDWKTALENA  188 (804)
Q Consensus       158 I~~~~~dgrty~LqA~SeeE~~eWI~AL~~a  188 (804)
                      +.+.  ++++|+|+|+|++++++||.||+.|
T Consensus        78 i~~~--~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          78 LRLS--DGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             EECT--TSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ECCC--CCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf             0026--8879999889999999999999859

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.6e-12  Score=97.49  Aligned_cols=100  Identities=18%  Similarity=0.281  Sum_probs=63.6

Q ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECCEE--EEECCCCCCCCCCCCCEEEECCCEEECCCCCE-----EEECCCCEE
Q ss_conf             36888654864079987787218999958816--88438999989888510121187463488661-----450589707
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSL--VFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV-----VVKADKKLL  155 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL--~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv-----~~~~~Kk~~  155 (804)
                      .++|+|||++++.  ..++|++|||+|.+..+  +||......   ..+...+.|..|.+......     .....+.++
T Consensus        10 ~v~k~G~L~K~~~--~~k~WkkR~fvL~~~~~~~~~~~~~~~~---~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~   84 (116)
T d1x1ga1          10 TVVKQGYLAKQGH--KRKNWKVRRFVLRKDPAFLHYYDPSKEE---NRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNL   84 (116)
T ss_dssp             EEEEEEEEEEECS--SSSSEEEEEEEEEESSCEEEEECSSSCC---SSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSC
T ss_pred             CEEEEEEEEEECC--CCCCCCEEEEEEECCCCEEEEECCCCCC---CCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCE
T ss_conf             8999999999848--9999735899998897589996264355---5640289858879998515675531023566513


Q ss_pred             EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             9998348899279999355212888999999774
Q 003668          156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       156 FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai  189 (804)
                      |.+..  .+++.|+|+|++++|++.|+.||+.+.
T Consensus        85 f~i~~--~~~~~~~f~a~s~ee~~~Wi~ai~~~t  116 (116)
T d1x1ga1          85 FKVIT--KDDTHYYIQASSKAERAEWIEAIKKLT  116 (116)
T ss_dssp             EEECC--TTCCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred             EEEEE--CCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             68992--798099998999999999999999649

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.3e-12  Score=98.82  Aligned_cols=92  Identities=20%  Similarity=0.312  Sum_probs=68.8

Q ss_pred             EEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECCCCC
Q ss_conf             88654864079987787218999958816884389999898885101211874634886614505897079998348899
Q 003668           86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG  165 (804)
Q Consensus        86 KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~~dg  165 (804)
                      ++|||.+...    +.|++|||||+++.|+||+++.....   +...+.+.+|.+...    ....+++||.+...  ++
T Consensus         3 ~s~yl~~~~~----~~WkkR~fvL~~~~L~yyk~~~~~~~---~~~~i~l~~~~v~~~----~~~~~~~~f~~~~~--~~   69 (95)
T d2cofa1           3 TSSYLNVLVN----SQWKSRWCSVRDNHLHFYQDRNRSKV---AQQPLSLVGCEVVPD----PSPDHLYSFRILHK--GE   69 (95)
T ss_dssp             TCCEEEEEET----TEEEEEEEEECSSCEEEECSSTTCSE---EEEEECTTTCEEECC----CBTTBSCEEEEEET--TE
T ss_pred             CCCCHHHHCC----CCCEEEEEEEECCEEEEEECCCCCCC---CCCCCCCCCEEEEEC----CCCCCEECCEECCC--CC
T ss_conf             3321010059----99307999998999989805556633---323012343399730----13431000010233--32


Q ss_pred             CEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             2799993552128889999997740
Q 003668          166 RAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       166 rty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                      ++|+|+|+|++|++.||.+|+.+.+
T Consensus        70 ~~~~l~A~s~~e~~~Wi~~L~~~tg   94 (95)
T d2cofa1          70 ELAKLEAKSSEEMGHWLGLLLSESG   94 (95)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf             2689607999999999999999867

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=8.3e-08  Score=67.81  Aligned_cols=105  Identities=12%  Similarity=0.220  Sum_probs=73.4

Q ss_pred             CCEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEEC
Q ss_conf             83688865486407998778721899995881688438999989888510121187463488661450589707999834
Q 003668           82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD  161 (804)
Q Consensus        82 ~~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~  161 (804)
                      +..+++|++.++...  .+.|+.|||+|-+..|.|+|...... ...-...+.+..|.+...   ......+++|.+.. 
T Consensus        26 G~li~~g~~~~~~~~--~~~~k~R~~fLF~~~Ll~~k~~~~~~-~~~~k~~i~l~~~~v~~~---~~~~~~~~~f~i~~-   98 (132)
T d1v61a_          26 GNVIFMSQVVMQHGA--CEEKEERYFLLFSSVLIMLSASPRMS-GFMYQGKIPIAGMVVNRL---DEIEGSDCMFEITG-   98 (132)
T ss_dssp             CCCSCEEEEEBCCSS--SSCCCEEEEEECSSCEEEEECSSSSS-CCEEEEEECTTTCBCSTT---CSSSSSCCCEEEEC-
T ss_pred             CCEEEEEEEEEEEEC--CCCCCEEEEEEECCEEEEEEECCCCC-EEEEEEECCHHHCCCCCC---CCCCCCCCEEEEEC-
T ss_conf             678999778999813--88742389999699899999847886-067730022532630124---45657652399827-


Q ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             889927999935521288899999977404899
Q 003668          162 GRDGRAFTLKAESLEDLYDWKTALENALAQAPS  194 (804)
Q Consensus       162 ~~dgrty~LqA~SeeE~~eWI~AL~~ai~~aP~  194 (804)
                       ...+.|+|+|.|+++++.||.+|+.++...|.
T Consensus        99 -~~~~~~~l~a~s~eek~~Wv~~L~~~i~~~~~  130 (132)
T d1v61a_          99 -STVERIVVHCNNNQDFQEWMEQLNRLTKSGPS  130 (132)
T ss_dssp             -SSSCEEEECCCCSHHHHHHHHHHHHHHTTSCS
T ss_pred             -CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             -99877999829999999999999999961899

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=1.3e-06  Score=59.71  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=68.9

Q ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEE---CCCCEEEEEE
Q ss_conf             3688865486407998778721899995881688438999989888510121187463488661450---5897079998
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVK---ADKKLLTVLF  159 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~---~~Kk~~FvI~  159 (804)
                      ..+++|+|++...+.  +.|+.|||+|-.+.|+|++......+...--..+.|..+.+.........   ..-+++|.+.
T Consensus        26 ~Li~eG~L~~~~~~~--~k~~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~~f~i~  103 (162)
T d2dfka2          26 ELIYTGEMAWIYQPY--GRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLH  103 (162)
T ss_dssp             CEEEEEEEEEESSTT--CCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEE
T ss_pred             EEEEEEEEEEEECCC--CCCEEEEEEEECCEEEEEEECCCCCCCEEECCCCCHHHCEEEECCCCCCCCCCCCCCCEEEEE
T ss_conf             599998999997689--971468999947969999863778881687540012110356202444545675434217999


Q ss_pred             ECCCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             348899279999355212888999999774
Q 003668          160 PDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       160 ~~~~dgrty~LqA~SeeE~~eWI~AL~~ai  189 (804)
                      .... .+.|+|+|.|++++..||.||+.+.
T Consensus       104 ~~~~-~~~~~~~A~s~~eK~~W~~~l~~~~  132 (162)
T d2dfka2         104 NKET-EEVHLFFAKKLEEKIRWLRAFREER  132 (162)
T ss_dssp             ESSS-SCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ECCC-CEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             8899-8199999599999999999999999

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=6.7e-05  Score=48.08  Aligned_cols=100  Identities=14%  Similarity=0.055  Sum_probs=65.4

Q ss_pred             EEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECCC
Q ss_conf             68886548640799877872189999588168843899998988851012118746348866145058970799983488
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR  163 (804)
Q Consensus        84 v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~~  163 (804)
                      .+++|.|.....+. .+.=++|||.|=.+.|.+.+..........-...+.+..+.+...   .+....+++|.+...  
T Consensus         4 li~eG~l~~~~~~~-~k~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~---~d~~~~~n~f~i~~~--   77 (109)
T d1zc3b1           4 LVYNGDLVEYEADH-MAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNV---KDNPPMKDMFKLLMF--   77 (109)
T ss_dssp             EEEEEEEEEEETTT-CCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEE---CCBTTBSSEEEEEET--
T ss_pred             EEEEEEEEEECCCC-CCCCEEEEEEEECCEEEEEEECCCCCEEEEEEEEEECCCEEEEEE---ECCCCCCEEEEECCC--
T ss_conf             99932699990677-985406999985488999998377651787303984142599985---146663337999169--


Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             992799993552128889999997740
Q 003668          164 DGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       164 dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                       .+.|+|+|.|++|...|+.+|+.++.
T Consensus        78 -~~~~~~~a~s~~eK~~W~~~l~~a~~  103 (109)
T d1zc3b1          78 -PESRIFQAENAKIKREWLEVLEETKR  103 (109)
T ss_dssp             -TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             -97899998999999999999999999

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.0001  Score=46.77  Aligned_cols=97  Identities=15%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCC---CCC----EEEECCCEEECCCCCEEEECCCCEE
Q ss_conf             368886548640799877872189999588168843899998988---851----0121187463488661450589707
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK---GSE----VNLTLGGIDLNNSGSVVVKADKKLL  155 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~---~~e----~~i~L~~i~l~~s~sv~~~~~Kk~~  155 (804)
                      ..+++|.|.+..+.      +.|||.|=.+.|+|.|......+..   +..    ..+.+..+.+...   .+....+++
T Consensus        26 ~li~eG~l~~~~~~------k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~---~~~~~~~~~   96 (133)
T d1dbha2          26 EFIMEGTLTRVGAK------HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDK---DDTNEYKHA   96 (133)
T ss_dssp             CEEEEEEEEETTCS------SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEEC---CCSSSCCSE
T ss_pred             EEEEEEEEEEECCC------CEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCC---CCCCCCCCC
T ss_conf             89999689995289------707999924848999831445533567885089972445000123336---788656331


Q ss_pred             EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             99983488992799993552128889999997740
Q 003668          156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       156 FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                      |.+..  .+.+.|+|+|.|++++..|+.+|..+..
T Consensus        97 f~i~~--~~~~~~~l~a~s~~eK~~W~~~l~~~~~  129 (133)
T d1dbha2          97 FEIIL--KDENSVIFSAKSAEEKNNWMAALISLQY  129 (133)
T ss_dssp             EEECC--TTSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEEC--CCCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             26871--8985899997999999999999999876

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=0.00015  Score=45.77  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=67.3

Q ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCC--CCCCEEEECCCEEECCCCCEEEECCCCEEEEEEE
Q ss_conf             36888654864079987787218999958816884389999898--8851012118746348866145058970799983
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ--KGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP  160 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~--~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~  160 (804)
                      ..+++|.|.+.......+.++.|||.|=.+.|+|.|..+.....  ..-...+.+..+.+...     .....++|.+..
T Consensus        12 ~Ll~~g~l~v~~~~~~~~k~~~R~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~f~i~~   86 (121)
T d1ntya2          12 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEH-----VEGDPCKFALWV   86 (121)
T ss_dssp             CEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECC-----CTTCTTEEEEEE
T ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCEEEEEEEEEECCEEEEEC-----CCCCCCEEEEEE
T ss_conf             079983779971633478984799996489099999842788873267874598503698985-----799985089999


Q ss_pred             CCC--CCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             488--992799993552128889999997740
Q 003668          161 DGR--DGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       161 ~~~--dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                      ...  ....|+|+|.|++++..||.+|+.++.
T Consensus        87 ~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~  118 (121)
T d1ntya2          87 GRTPTSDNKIVLKASSIENKQDWIKHIREVIQ  118 (121)
T ss_dssp             SSSCCTTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             24799836999997999999999999999998

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=8.6e-05  Score=47.34  Aligned_cols=100  Identities=14%  Similarity=0.250  Sum_probs=57.6

Q ss_pred             EEEEEEEEEECCCCCCCCC-CEEEEEEECC-EEEEECCCCCCCCCCCCCEEEECCCEE-ECC--CCCE----EEECCCCE
Q ss_conf             6888654864079987787-2189999588-168843899998988851012118746-348--8661----45058970
Q 003668           84 VFKSGPLFISSKGIGWTSW-KKRWFILTHT-SLVFFRSDPSAIPQKGSEVNLTLGGID-LNN--SGSV----VVKADKKL  154 (804)
Q Consensus        84 v~KEGyL~l~kKg~~~ksW-kKRwFVL~~~-sL~yYKd~~~~~~~~~~e~~i~L~~i~-l~~--s~sv----~~~~~Kk~  154 (804)
                      ..++|..++.-++   ++| ++|||+|..+ .+.+|++.+.......  ..+.+..|. +..  ....    ........
T Consensus        10 ~l~~G~~l~K~~~---~~~~k~R~f~L~~d~~~i~~~~~~~~~~~~~--~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~   84 (119)
T d1maia_          10 ALLKGSQLLKVKS---SSWRRERFYKLQEDCKTIWQESRKVMRSPES--QLFSIEDIQEVRMGHRTEGLEKFARDIPEDR   84 (119)
T ss_dssp             HHHHCEEEEEESS---SSCEEEEEEEECTTSSEEEECCCCTTCCTTT--TEEEGGGEEEEEESSCSHHHHHHCTTSCGGG
T ss_pred             HHHCCCEEEEECC---CCCCEEEEEEECCCCCEEEEECCCCCCCCCC--EEEEHHHCEEEECCCCCCHHHHCCCCCCCCC
T ss_conf             9975882898678---9997899999938989999927987777654--1898788267876888801320356788572


Q ss_pred             EEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             79998348899279999355212888999999774
Q 003668          155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL  189 (804)
Q Consensus       155 ~FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai  189 (804)
                      ||.|+.. ...+++.|.|+|+++++.|+.+|+..+
T Consensus        85 ~FsIv~~-~~~r~l~l~a~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_          85 CFSIVFK-DQRNTLDLIAPSPADAQHWVQGLRKII  118 (119)
T ss_dssp             EEEEEES-SSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEEC-CCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             6999995-898379999899999999999999984

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.0005  Score=42.12  Aligned_cols=100  Identities=19%  Similarity=0.230  Sum_probs=60.7

Q ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCC--------CCCC------EEEECCCEEECCCCCEEE
Q ss_conf             36888654864079987787218999958816884389999898--------8851------012118746348866145
Q 003668           83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ--------KGSE------VNLTLGGIDLNNSGSVVV  148 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~--------~~~e------~~i~L~~i~l~~s~sv~~  148 (804)
                      ..++||.|.+...   .+..+.|||.|=.+.|+|.|........        ....      ..+.+....+..     .
T Consensus        24 ~Li~eG~L~~k~~---~~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~   95 (140)
T d1xcga2          24 KMIHEGPLTWRIS---KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRS-----V   95 (140)
T ss_dssp             CEEEEEEEEECCS---SSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEE-----C
T ss_pred             EEEEEEEEEEEEC---CCCCEEEEEEEECCEEEEEEECCCCEEECCCCCCCCCCCCCEEEECCEEECCEEEEEC-----C
T ss_conf             5999846899934---8984479999835869999962562252246532124553115663507624379842-----7


Q ss_pred             ECCCCEEEEEEEC--CCCCCEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             0589707999834--889927999935521288899999977404
Q 003668          149 KADKKLLTVLFPD--GRDGRAFTLKAESLEDLYDWKTALENALAQ  191 (804)
Q Consensus       149 ~~~Kk~~FvI~~~--~~dgrty~LqA~SeeE~~eWI~AL~~ai~~  191 (804)
                      ..+++ +|.++..  ......|+|+|.|++|...|+.+|+.++..
T Consensus        96 ~~~~~-~f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~n  139 (140)
T d1xcga2          96 ATDKR-AFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  139 (140)
T ss_dssp             SSCSS-EEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCC-EEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             88998-599997578999669999929999999999999999973

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=97.47  E-value=0.0012  Score=39.55  Aligned_cols=98  Identities=15%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             EEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCC-------CCCC-------CCEEEECCCEEECCCCCEEEEC
Q ss_conf             8886548640799877872189999588168843899998-------9888-------5101211874634886614505
Q 003668           85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI-------PQKG-------SEVNLTLGGIDLNNSGSVVVKA  150 (804)
Q Consensus        85 ~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~-------~~~~-------~e~~i~L~~i~l~~s~sv~~~~  150 (804)
                      ++||.|.....+.   .=+.||+.|=.+.|.|.|...+..       +..+       -...+.+..+.++..     ..
T Consensus         2 i~eG~L~~~~~~~---k~~er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~-----~~   73 (114)
T d1txda2           2 IHEGPLVWKVNRD---KTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQV-----AT   73 (114)
T ss_dssp             EEEEEEEEESSSS---CBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEEC-----CC
T ss_pred             CEEEEEEEEECCC---CCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCEECCCEEEEEC-----CC
T ss_conf             4332189996389---834799998437599997034663005666444556641166547289540899986-----89


Q ss_pred             CCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             8970799983488992799993552128889999997740
Q 003668          151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       151 ~Kk~~FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                      +.+.+|.|.........|+|+|.|+++.+.||++|+.+++
T Consensus        74 d~~~~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          74 DNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             -CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf             9887899996588734899995998999999999999860

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.0002  Score=44.76  Aligned_cols=95  Identities=17%  Similarity=0.218  Sum_probs=59.3

Q ss_pred             EEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCC-------CCCCC------EEEECCCEEECCCCCEEEEC
Q ss_conf             688865486407998778721899995881688438999989-------88851------01211874634886614505
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP-------QKGSE------VNLTLGGIDLNNSGSVVVKA  150 (804)
Q Consensus        84 v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~-------~~~~e------~~i~L~~i~l~~s~sv~~~~  150 (804)
                      .++||.|++.+++      +.|||.|=.+.|.|.|.......       .....      ..+.+..+.+....   +..
T Consensus        25 li~eG~L~k~~~~------k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~~---d~~   95 (142)
T d1ki1b2          25 FLHSGKLYKAKNN------KELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPT---DPS   95 (142)
T ss_dssp             EEEECCCBCSSSC------CCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECCS---SSC
T ss_pred             EEEEEEEEEECCC------CEEEEEEECCEEEEEEECCCCCEECCCCCCCCCCCEEEEEECCCCHHHHEEECCC---CCC
T ss_conf             9996479995389------7889999657799998613432011222346678602898712103230125157---764


Q ss_pred             CCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             8970799983488992799993552128889999997740
Q 003668          151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       151 ~Kk~~FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                      .-.+.|.+..   .++.|+|+|.|++|+..||.+|+.|+.
T Consensus        96 ~~~~~~~~~~---~~~~~~l~a~s~~ek~~W~~~I~~Ai~  132 (142)
T d1ki1b2          96 GDEPIFHISH---IDRVYTLRAESINERTAWVQKIKAASE  132 (142)
T ss_dssp             CC---CEEEE---TTEEEECBCSSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECC---CCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             4204898657---997999992999999999999999999

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.007  Score=34.34  Aligned_cols=102  Identities=11%  Similarity=0.196  Sum_probs=62.5

Q ss_pred             CEEEEEEEEEECCCC---------CCCCCCEEEEEEECCEEEEECCCCCCCCC--CCCCEE----EECCCEEECCCCCEE
Q ss_conf             368886548640799---------87787218999958816884389999898--885101----211874634886614
Q 003668           83 AVFKSGPLFISSKGI---------GWTSWKKRWFILTHTSLVFFRSDPSAIPQ--KGSEVN----LTLGGIDLNNSGSVV  147 (804)
Q Consensus        83 ~v~KEGyL~l~kKg~---------~~ksWkKRwFVL~~~sL~yYKd~~~~~~~--~~~e~~----i~L~~i~l~~s~sv~  147 (804)
                      ..+++|.|.+.+.+.         ..+.=+.|||.|=...|+|.|........  ..+.+.    +.+..+.+...    
T Consensus        12 ~Ll~qg~~~v~~~~~~~~~~~~~~~~~K~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~~~~~v~~~----   87 (147)
T d1kz7a2          12 KLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITEN----   87 (147)
T ss_dssp             CEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECC----
T ss_pred             CEEEEEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEC----
T ss_conf             7789604898736765313445553357743899972272899973146776655685489966886377556744----


Q ss_pred             EECCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             5058970799983488992799993552128889999997740
Q 003668          148 VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       148 ~~~~Kk~~FvI~~~~~dgrty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                       .....+.|.+... .....|+|+|.|+++...|+.+|..++.
T Consensus        88 -~~~~~~~f~~~~~-~~~~~~~l~a~s~eeK~~W~~~I~~~l~  128 (147)
T d1kz7a2          88 -VKGDTKKFEIWYN-AREEVYIIQAPTPEIKAAWVNAIRKVLT  128 (147)
T ss_dssp             -BTTBTTEEEEEET-TTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCCEEEEEEC-CCCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             -7998645888967-9984799996999999999999999999

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.89  E-value=0.017  Score=31.70  Aligned_cols=98  Identities=12%  Similarity=0.109  Sum_probs=57.4

Q ss_pred             EEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCC-CCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEECC
Q ss_conf             68886548640799877872189999588168843899998-98885101211874634886614505897079998348
Q 003668           84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG  162 (804)
Q Consensus        84 v~KEGyL~l~kKg~~~ksWkKRwFVL~~~sL~yYKd~~~~~-~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~~~  162 (804)
                      .+++|++.+.....  +.+ .||+.|=...|+|+|...... +.+.-.-.+.+..+.+...      ......|.+....
T Consensus        10 ll~~~~f~v~~~~~--k~k-~R~vFLF~~~ll~~K~~~~~~~~~y~~K~~i~l~~~~v~e~------~gd~~~F~i~~~~   80 (119)
T d1fhoa_          10 IIRHDAFQVWEGDE--PPK-LRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQH------TTDEDTIVLQPQE   80 (119)
T ss_dssp             SSEEEEEEECSTTC--SCE-EEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEE------CTTCCEEEEECCS
T ss_pred             EEEEEEEEEEECCC--CCE-EEEEEEECCEEEEEEECCCCCCCEEEEECEEECCCEEEEEC------CCCCCEEEEEECC
T ss_conf             69980799980798--731-89999976859999843689996089706899896698976------8998379998589


Q ss_pred             CCC----CEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             899----2799993552128889999997740
Q 003668          163 RDG----RAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       163 ~dg----rty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                      +..    ..+.++|.|+++++.|+.+|...+.
T Consensus        81 ~~~~~~~~~~~~~a~s~~~K~~Wv~~I~e~~~  112 (119)
T d1fhoa_          81 PGLPSFRIKPKDFETSEYVRKAWLRDIAEEQE  112 (119)
T ss_dssp             TTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCH
T ss_pred             CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             99876449999935997999999999999999

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.14  E-value=0.65  Score=20.97  Aligned_cols=95  Identities=16%  Similarity=0.265  Sum_probs=66.3

Q ss_pred             EEEEEEEEEEC---CCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCEEECCCCCEEEECCCCEEEEEEE
Q ss_conf             68886548640---799877872189999588168843899998988851012118746348866145058970799983
Q 003668           84 VFKSGPLFISS---KGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP  160 (804)
Q Consensus        84 v~KEGyL~l~k---Kg~~~ksWkKRwFVL~~~sL~yYKd~~~~~~~~~~e~~i~L~~i~l~~s~sv~~~~~Kk~~FvI~~  160 (804)
                      ..|.|.|-++-   .+++.-.|.+....|....|..--. ++       ...+.|+.|-+....... +.. +.+|++..
T Consensus         6 a~rsGlLE~~~~~~~~~~~~rW~rVl~~L~ed~Lt~s~~-~d-------~k~IPLKmcyvtR~~~~~-D~E-nR~lElhS   75 (105)
T d2adza1           6 APRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPL-SE-------AKHVSLKMAYVSRRCTPT-DPE-PRYLEICA   75 (105)
T ss_dssp             CCEEEEEEECCCCSSSSSCCCCEEEEEEEETTEEEEESS-CS-------CEEEETTTCEEEEECCSS-CCS-SCEEEEEE
T ss_pred             CCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEECC-CC-------CCEEEEEEEEEEECCCCC-CCC-CCEEEEEC
T ss_conf             775622899604677754001353042046645886503-46-------536003567764035589-976-65899988


Q ss_pred             CCCCC-CEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             48899-2799993552128889999997740
Q 003668          161 DGRDG-RAFTLKAESLEDLYDWKTALENALA  190 (804)
Q Consensus       161 ~~~dg-rty~LqA~SeeE~~eWI~AL~~ai~  190 (804)
                      .  || .+..|.|.+..+.+.|..||...+.
T Consensus        76 p--DG~~t~iLR~kD~a~A~~WF~Aihs~i~  104 (105)
T d2adza1          76 A--DGQDAVFLRAKDEASARSWAGAIQAQIG  104 (105)
T ss_dssp             T--TTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             C--CCCCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf             9--9972699986987899999999887604